BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003263
(835 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224143911|ref|XP_002325119.1| predicted protein [Populus trichocarpa]
gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa]
Length = 882
Score = 1182 bits (3059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/702 (78%), Positives = 637/702 (90%), Gaps = 5/702 (0%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWER 192
E +++F+QDPPW S+ F KG+YK ++K+ E+++++KRK+NLLRRRQ+++ETEAWER
Sbjct: 4 ESSKKVFIQDPPWISAHFWKGMYKLANKKVKV-EFKDIEKRKYNLLRRRQIREETEAWER 62
Query: 193 MVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIE 252
M DEY+ L +M E++LAPNLP++KGL LGWF PL EAIE+EQKM+++KKQK+A++P+IE
Sbjct: 63 MADEYRGLVREMCERKLAPNLPYVKGLLLGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIE 122
Query: 253 LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK 312
LLPADK+AVIVMHKMMGL+M GHED CV+VVQAAV IGMAIEQE+RIH+FLEKTKNY+RK
Sbjct: 123 LLPADKMAVIVMHKMMGLLMVGHEDGCVRVVQAAVQIGMAIEQEVRIHNFLEKTKNYQRK 182
Query: 313 KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVEL 372
K + + +E + KEKE+LRKRVNSLI+ KR+ME Q L+K +ETKPW R TQAKLGSRL+EL
Sbjct: 183 KTMHEVQETMDKEKEVLRKRVNSLIRRKRLMEVQNLVKQDETKPWSRGTQAKLGSRLIEL 242
Query: 373 LIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
L ETAYVQ PVN ++ PPDVRPAFRH FKT+ K+PGQK K+YGV+ECDPL+L GLD +
Sbjct: 243 LTETAYVQPPVNQSEDIPPDVRPAFRHIFKTLTKNPGQKIVKKYGVIECDPLILTGLDGT 302
Query: 433 AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492
AKHMLIPY PMLVPPKKWKGY+KGG+LFLPSYVMRTHGSR+QQ A++SV G M+KVFEA
Sbjct: 303 AKHMLIPYFPMLVPPKKWKGYDKGGHLFLPSYVMRTHGSRQQQVAVRSVPGKQMQKVFEA 362
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
LDTLG+TKWRVN+++L V+E IW SGGNIAGLVDR D+ IPEKP S+D+TE+QKWKWSVR
Sbjct: 363 LDTLGNTKWRVNRRLLDVVERIWTSGGNIAGLVDREDIPIPEKPSSDDLTEIQKWKWSVR 422
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
KAKKINQERHSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CR
Sbjct: 423 KAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCR 482
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
GVLEF EGRPLGKSGLRWLKIHLANL+SGGVEKLSHDGRLAFVENHL EIFDSA+NP+NG
Sbjct: 483 GVLEFEEGRPLGKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAKNPVNG 542
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
RWWL AEDPFQCLAACINLSEAL S+SPH+VISHLPIHQDGSCNGLQHYAALGR+TLEA
Sbjct: 543 KRWWLKAEDPFQCLAACINLSEALNSASPHTVISHLPIHQDGSCNGLQHYAALGRDTLEA 602
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
AAVNLVA EKP+DVYSEIAVRVHEI++RDSNKDP+ +P ALLAKIL+DQVDRKLVKQTVM
Sbjct: 603 AAVNLVAAEKPSDVYSEIAVRVHEIIRRDSNKDPATNPHALLAKILVDQVDRKLVKQTVM 662
Query: 793 TSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
TSVYGVT+VGAREQIKRRLEEKGHITDDR LF+AACY AKV+
Sbjct: 663 TSVYGVTYVGAREQIKRRLEEKGHITDDRLLFSAACYTAKVT 704
>gi|224088334|ref|XP_002308414.1| predicted protein [Populus trichocarpa]
gi|222854390|gb|EEE91937.1| predicted protein [Populus trichocarpa]
Length = 982
Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/842 (69%), Positives = 688/842 (81%), Gaps = 46/842 (5%)
Query: 1 MASAASISQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFP 60
MAS S IQ+P T TT+ T K + K LHFL + SS S S+ S
Sbjct: 1 MASTTPFS-IQHP----TWTTSKTLKFHEPY---------KNLHFLSNPSSHSLSNPSLS 46
Query: 61 VNLKSSSSKPTRLRP----RPLQDSIQSNFMENIENSVDFHIPTCEQEQNFHQRVENTET 116
+ + K + L P PL DS +E DF IPT N HQ++E T
Sbjct: 47 SSSFPLNPKLSILNPPLLFHPLHDSSHDRLLE------DFEIPTI----NNHQKLE-TLI 95
Query: 117 CADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKK 172
D Q++ E +R+F++D PW S+++ KG +K ++KL E ++++K
Sbjct: 96 KFD------------QIVHGESSKRVFIRDSPWISALYWKGTHKIANKKVKL-ELKDIEK 142
Query: 173 RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
RK+NLLRRRQ+++ETEAWERM +EY L +M E++LAPNLP++K LFLGWF PL EAIE
Sbjct: 143 RKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIE 202
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
REQK++++KKQK+A++P+IELLPADK+AVIVMHKMMGLVM GHED CV+VVQAAV IG+A
Sbjct: 203 REQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIA 262
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 352
IEQE+RIH+FLEKTKN++RKK + D +E + KEKE+LRKRVNSLI+ KR+ME Q L+ +
Sbjct: 263 IEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLRKRVNSLIRRKRLMEVQNLVIQD 322
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
ETKPW RD QAKLGSRL+ELL ETAYVQ PV+ ++ PPDVRPAFRH FK++ K+PGQKT
Sbjct: 323 ETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKT 382
Query: 413 TKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
K+YGV+ECDPL+L GLD +AKHMLIPY PMLVPPKKW+GY+KGG+LFLPSY+MRTHGSR
Sbjct: 383 VKKYGVIECDPLILTGLDGTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSR 442
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
+QQ+A++SV G M+KVFEALDTLG+TKWRVN +VL V+E IW SGGN AGLV+R D+ I
Sbjct: 443 QQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDIPI 502
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
PEK S+D+TE+QKWKWSVRKAKKINQERHSQRCDTELKLSVAR++KDEEGFYYPHNLDF
Sbjct: 503 PEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDF 562
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGRAYPMHPHL HLSSD+CRGVLEFAEGRPLGKSGL WLKIHLANL+SGGVEKLSHDGRL
Sbjct: 563 RGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCWLKIHLANLYSGGVEKLSHDGRL 622
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
AFVENHL EIFDSAENP+NG RWWLTAEDPFQCLAACINLSEALKS+SPH+VISHLPIHQ
Sbjct: 623 AFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQ 682
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALGR++ EAAAVNLVA EKP+DVYSEIA RVHEI++RDSNKDP+ +P A
Sbjct: 683 DGSCNGLQHYAALGRDSQEAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHA 742
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
LLAK+LID+VDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKGHITDDR LF+AACYAAK
Sbjct: 743 LLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYAAK 802
Query: 833 VS 834
V+
Sbjct: 803 VT 804
>gi|225445794|ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
vinifera]
Length = 979
Score = 1157 bits (2992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/716 (76%), Positives = 632/716 (88%), Gaps = 11/716 (1%)
Query: 126 ENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKR-------IKLQEYREMKKRKFNLL 178
++S+N Q+ E RIFVQDPPW SS +R +KL E+RE ++R + LL
Sbjct: 90 QDSSNIQVK--ESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKL-EFRETERRNYGLL 146
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ 238
RRRQVK ETEAWERMV+EY+E+E +M EK+LAPNLP++K LFLGWF PL EAI++EQ+ Q
Sbjct: 147 RRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQ 206
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
RTKKQKAAYAPHIELLPADK+AVIVMHKMMGLVM GHE+ CV+VVQAAV IGMAIEQE+R
Sbjct: 207 RTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVR 266
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWG 358
IHSFLEKTKN++R K + ++E L +EKE+LRKRV S I+ K+++E QKL+KNEE PWG
Sbjct: 267 IHSFLEKTKNFERHKTVGHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWG 325
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGV 418
RDTQAKLGSRL+ELL ETAYVQ PVN + PPDVRPAFRH FKT+ K GQK ++YGV
Sbjct: 326 RDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGV 385
Query: 419 VECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ECDPLVL GLDR+AKHM+IPYVPML+PPKKWKGY+KGGYLFLPSYVMRTHGSRKQQ+A+
Sbjct: 386 IECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAV 445
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS 538
KSV ++KVFEALDTLG+TKWR+N++VLSV+ESIW GGN+ GLVDR +V +PEKP +
Sbjct: 446 KSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKPST 505
Query: 539 EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
ED+TE+Q WKW+ RKAKKINQERHS RCDTE+KLSVAR+MKDEEGFYYPHNLDFRGRAYP
Sbjct: 506 EDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYP 565
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
MHPHLNHLSSD+CRGVLEFAEGRPLGKSGLRWLKI LANL++GGVEKLS+DGRLAFV+NH
Sbjct: 566 MHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNH 625
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
L ++FDSA+NP+NG+RWWLTAEDPFQCLAACINLSEAL+SSSPH+VISHLPIHQDGSCNG
Sbjct: 626 LDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSCNG 685
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGRN+LEA+AVNLVAGEKPADVYSEIA RVHEIMKRDSNKDP+ P+ALLAK+L
Sbjct: 686 LQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVL 745
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
I QVDRKLVKQTVMTSVYGVT++GAREQIKRRL EKG ITD+R LF AACYAAKV+
Sbjct: 746 IGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVT 801
>gi|449506262|ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 1152 bits (2980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/805 (69%), Positives = 659/805 (81%), Gaps = 35/805 (4%)
Query: 33 TKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSSSKPTRLRPRPLQDSIQSNFMENIEN 92
TKR K S +S SS SFPVN S+S L +PL DS+ NF E ++N
Sbjct: 25 TKRWKCERKTHPSFTSTFNSPLSSVSFPVNFDSTSQS---LHLQPLADSVHENFTETLDN 81
Query: 93 SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSS 152
S++ IP E HQ I R E+S +RIF+QDPPW +S
Sbjct: 82 SMNLQIPISE----IHQ------------ITRGESS-----------KRIFIQDPPWIAS 114
Query: 153 IFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL 209
+FLKGLYK ++ + E+ E++KRK+NLLRRRQ+K ETEAWE+MV+EYKELE +M EK+L
Sbjct: 115 LFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKL 174
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMG 269
APNLP++K LFLGWF PL AIE EQK QR+KKQKAA+APHIELL ADK+AVIVM+KMMG
Sbjct: 175 APNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMG 234
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
L+M +D CVQVVQAAV IG AIEQE+RI S LEK ++ +R K+ ADTE L+KEKE+L
Sbjct: 235 LLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTE-CLTKEKEVL 293
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYS 389
RK+VN LI+ +++ E QKLLK EE K WGRDTQAKLGSRL+ELLIE+A++Q PV+ + S
Sbjct: 294 RKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADS 353
Query: 390 PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKK 449
PPD+RPAF H FK + K PGQ K+YGVVECDP+VL GLDR+AKHMLIPY+PMLVPPKK
Sbjct: 354 PPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKK 413
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
WKGY+KGG+ FLPSYVMRTHGS +QQ+A+K+++G M+KVFEALD LGSTKWRVN+ VLS
Sbjct: 414 WKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLS 473
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
V+ES+W GGN AGLVDR DV IPEKPL D+TE+Q+W+WS++KAKKINQE HSQRCD E
Sbjct: 474 VVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVE 532
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
LKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL
Sbjct: 533 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLH 592
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHLANL++GGVEKLS+D RLAFV++HL IFDSA NP+NG RWWLTAEDPFQCLAAC
Sbjct: 593 WLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAAC 652
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+NLSEALKSS+PH+VIS+LPIHQDGSCNGLQHYAALGR+TLEAAAVNLVAGEKPADVYSE
Sbjct: 653 MNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSE 712
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
IA RVH IM RD++KDP+ +P A LAK+LIDQVDRKLVKQTVMTSVYGVT++GAREQIKR
Sbjct: 713 IAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKR 772
Query: 810 RLEEKGHITDDRQLFAAACYAAKVS 834
RLEEKG I+DDR F A+CYAAKV+
Sbjct: 773 RLEEKGLISDDRLRFRASCYAAKVT 797
>gi|449454095|ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Cucumis sativus]
Length = 975
Score = 1150 bits (2974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/805 (69%), Positives = 658/805 (81%), Gaps = 35/805 (4%)
Query: 33 TKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSSSKPTRLRPRPLQDSIQSNFMENIEN 92
TKR K S +S SS SFPVN S+S L +PL DS+ NF E ++N
Sbjct: 25 TKRWKCERKTHTSFTSTFNSPLSSVSFPVNFDSTSQS---LHLQPLADSVHENFTETLDN 81
Query: 93 SVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSS 152
S++ IP E HQ I R E+S +RIF+QDPPW +S
Sbjct: 82 SMNLQIPISE----IHQ------------ITRGESS-----------KRIFIQDPPWIAS 114
Query: 153 IFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL 209
+FLKGLYK ++ + E+ E++KRK+NLLRRRQ+K ETEAWE+MV+EYKELE +M EK+L
Sbjct: 115 LFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKL 174
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMG 269
APNLP++K LFLGWF PL AIE EQK QR+KKQKAA+APHIELL ADK+A IVM+KMMG
Sbjct: 175 APNLPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAGIVMYKMMG 234
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
L+M +D CVQVVQAAV IG AIEQE+RI S LEK ++ +R K+ ADTE L+KEKE+L
Sbjct: 235 LLMMAAQDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTE-CLTKEKEVL 293
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYS 389
RK+VN LI+ +++ E QKLLK EE K WGRDTQAKLGSRL+ELLIE+A++Q PV+ + S
Sbjct: 294 RKQVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADS 353
Query: 390 PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKK 449
PPD+RPAF H FK + K PGQ K+YGVVECDP+VL GLDR+AKHMLIPY+PMLVPPKK
Sbjct: 354 PPDIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKK 413
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
WKGY+KGG+ FLPSYVMRTHGS +QQ+A+K+++G M+KVFEALD LGSTKWRVN+ VLS
Sbjct: 414 WKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLS 473
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
V+ES+W GGN AGLVDR DV IPEKPL D+TE+Q+W+WS++KAKKINQE HSQRCD E
Sbjct: 474 VVESLWAQGGNTAGLVDRKDVPIPEKPLG-DLTEMQEWRWSMKKAKKINQELHSQRCDVE 532
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
LKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPLGKSGL
Sbjct: 533 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLH 592
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHLANL++GGVEKLS+D RLAFV++HL IFDSA NP+NG RWWLTAEDPFQCLAAC
Sbjct: 593 WLKIHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAAC 652
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+NLSEALKSS+PH+VIS+LPIHQDGSCNGLQHYAALGR+TLEAAAVNLVAGEKPADVYSE
Sbjct: 653 MNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSE 712
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
IA RVH IM RD++KDP+ +P A LAK+LIDQVDRKLVKQTVMTSVYGVT++GAREQIKR
Sbjct: 713 IAARVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKR 772
Query: 810 RLEEKGHITDDRQLFAAACYAAKVS 834
RLEEKG I+DDR F A+CYAAKV+
Sbjct: 773 RLEEKGLISDDRLRFRASCYAAKVT 797
>gi|297825331|ref|XP_002880548.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
gi|297326387|gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
Length = 990
Score = 1112 bits (2877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/750 (71%), Positives = 626/750 (83%), Gaps = 13/750 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 71 ISNSVHFHGNLIESFENQDSSYAGTINGASL-IEELENPVERN--GLSGRRRLFMQDPPW 127
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 128 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 187
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 188 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 247
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 248 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 302
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 303 EKQLLRKRVNSLIRRKRIIDALKVVKTEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 362
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRH+FKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 363 QSGDSIPEFRPAFRHKFKTVTKYPGSKMVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 422
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+AL+ ++ +VFEALDTLG+TKWRVN
Sbjct: 423 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALRDISHKTAHRVFEALDTLGNTKWRVN 482
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWSVRKA KIN+ERHS
Sbjct: 483 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEEIQSWKWSVRKANKINRERHSL 542
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 543 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 602
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANLF+GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 603 KSGLHWLKIHLANLFAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 662
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++AL+S SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 663 CLAACVILTQALRSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 722
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 723 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 782
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
EQIKRRLEEKG ITD+R LFAAACY+AKV+
Sbjct: 783 EQIKRRLEEKGVITDERMLFAAACYSAKVT 812
>gi|79602097|ref|NP_973525.2| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|330252436|gb|AEC07530.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 895
Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/750 (72%), Positives = 626/750 (83%), Gaps = 13/750 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
EQIKRRLEEKG ITD+R LFAAACY+AKV+
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVT 815
>gi|15224093|ref|NP_179989.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
gi|3914826|sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; Flags:
Precursor
gi|2330560|emb|CAA69972.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|2330564|emb|CAA69717.1| chloroplast single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|4115372|gb|AAD03373.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|110739160|dbj|BAF01496.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|330252437|gb|AEC07531.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
Length = 993
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/750 (72%), Positives = 626/750 (83%), Gaps = 13/750 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
EQIKRRLEEKG ITD+R LFAAACY+AKV+
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVT 815
>gi|255574998|ref|XP_002528405.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
gi|223532193|gb|EEF33998.1| DNA-directed RNA polymerase 3B, chloroplast precursor, putative
[Ricinus communis]
Length = 1000
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/811 (67%), Positives = 645/811 (79%), Gaps = 64/811 (7%)
Query: 41 KILHFL-----HSCSSSSSSSSSFPVNLKSSSSKPTRLRP-RPLQDSIQSNFMEN-IENS 93
K LHFL HS ++S SSSSFP+ K P L P PL D+++ + +E+ +EN
Sbjct: 27 KNLHFLSVPTSHSLFTNSLSSSSFPLITKF----PRNLLPFHPLHDAVEEHLLEDLVENP 82
Query: 94 VDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPWFSSI 153
+ H + ET L +P + N HQ++ E RR+F+QDPPW S++
Sbjct: 83 IGNH--------------QKLETLIKLDLPTNHN---HQVLPEESSRRVFIQDPPWISAL 125
Query: 154 FLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL 209
F KGLYK +KL E+++++KRK+NLLRRRQ+++ETEAWERMV+EYK L +M E++L
Sbjct: 126 FFKGLYKIPNKEVKL-EFKDIEKRKYNLLRRRQIREETEAWERMVEEYKALVKEMCERKL 184
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMG 269
APNLP++KGLFLGWF PL E I+ EQ +QR+KK KAA+APHIELLPADK+AVIVMHKM+G
Sbjct: 185 APNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHIELLPADKMAVIVMHKMVG 244
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
L+M GHED CV +VQAAV IGMAIEQE+RIH+FLEKTKNY+RKK I+ +E L KEKE+L
Sbjct: 245 LLMVGHEDGCVPLVQAAVQIGMAIEQEVRIHNFLEKTKNYQRKKTISGAQESLGKEKEIL 304
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYS 389
RKRVNSLI+ K+++E QKL+KNEE KPWGRDTQAKLGSRL+ELL ETA+VQ PVN +
Sbjct: 305 RKRVNSLIRRKKLIEVQKLVKNEEMKPWGRDTQAKLGSRLIELLTETAFVQPPVNQSADV 364
Query: 390 PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKK 449
PPDVRPAFRHRF+ + +PGQK K+YGV+EC+PLVL+GLD SAKHMLIPY PMLVPPKK
Sbjct: 365 PPDVRPAFRHRFRIVKNNPGQKIVKKYGVIECNPLVLKGLDGSAKHMLIPYFPMLVPPKK 424
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
WKGYNKGG+ FLPSY+MRTHGSRKQQ+ALK+V N M+KVFEALDTLG+TKWRVN++VL
Sbjct: 425 WKGYNKGGHFFLPSYIMRTHGSRKQQDALKNVPRNHMQKVFEALDTLGNTKWRVNRRVLD 484
Query: 510 VLESIWVSGGNIAGLVDRND------VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
V+ESIW GGNIAGLVDR D L+P L + +WS RKAKK N+ERH
Sbjct: 485 VVESIWARGGNIAGLVDRKDAGCHQSALLPVLMLFMKTDRTSEVRWSARKAKKTNRERHL 544
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
VAR++KDEEGFYYPHNLDFRGRAYPMHPHL HLSSD+CRG+LEFAEGRPL
Sbjct: 545 N--------DVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGILEFAEGRPL 596
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGLRWLKIHLANL+SGGVEKLSHDGRLAFVE+HL +IFDSAENP+NG+RWWLTAEDPF
Sbjct: 597 GKSGLRWLKIHLANLYSGGVEKLSHDGRLAFVEDHLADIFDSAENPVNGNRWWLTAEDPF 656
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLAACINLSEALKSSSPH+VISHLPIHQ EAAAVNLVAGEKP
Sbjct: 657 QCLAACINLSEALKSSSPHTVISHLPIHQP-----------------EAAAVNLVAGEKP 699
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
ADVY+EIA RVHE+++RDSNKDP+ +P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VGA
Sbjct: 700 ADVYTEIAARVHELIERDSNKDPATNPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGA 759
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
REQIKRRLEEKG ITDDR LF+A+CY AKV+
Sbjct: 760 REQIKRRLEEKGQITDDRLLFSASCYTAKVT 790
>gi|297743676|emb|CBI36559.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/631 (79%), Positives = 575/631 (91%), Gaps = 1/631 (0%)
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K LFLGWF PL EAI++EQ+ QRTKKQKAAYAPHIELLPADK+AVIV
Sbjct: 1 MCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVIV 60
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
MHKMMGLVM GHE+ CV+VVQAAV IGMAIEQE+RIHSFLEKTKN++R K + ++E L
Sbjct: 61 MHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEVRIHSFLEKTKNFERHKTVGHSQEGL- 119
Query: 324 KEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPV 383
+EKE+LRKRV S I+ K+++E QKL+KNEE PWGRDTQAKLGSRL+ELL ETAYVQ PV
Sbjct: 120 REKEILRKRVKSFIRKKKIIEVQKLVKNEEITPWGRDTQAKLGSRLIELLTETAYVQTPV 179
Query: 384 NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPM 443
N + PPDVRPAFRH FKT+ K GQK ++YGV+ECDPLVL GLDR+AKHM+IPYVPM
Sbjct: 180 NQSADCPPDVRPAFRHTFKTVTKESGQKDWRKYGVIECDPLVLIGLDRTAKHMVIPYVPM 239
Query: 444 LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRV 503
L+PPKKWKGY+KGGYLFLPSYVMRTHGSRKQQ+A+KSV ++KVFEALDTLG+TKWR+
Sbjct: 240 LIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQDAVKSVPRRQLQKVFEALDTLGNTKWRI 299
Query: 504 NKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
N++VLSV+ESIW GGN+ GLVDR +V +PEKP +ED+TE+Q WKW+ RKAKKINQERHS
Sbjct: 300 NRRVLSVVESIWARGGNLGGLVDRENVPLPEKPSTEDLTEIQNWKWNARKAKKINQERHS 359
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
RCDTE+KLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEFAEGRPL
Sbjct: 360 LRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPL 419
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGLRWLKI LANL++GGVEKLS+DGRLAFV+NHL ++FDSA+NP+NG+RWWLTAEDPF
Sbjct: 420 GKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLDDVFDSADNPLNGNRWWLTAEDPF 479
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLAACINLSEAL+SSSPH+VISHLPIHQDGSCNGLQHYAALGRN+LEA+AVNLVAGEKP
Sbjct: 480 QCLAACINLSEALRSSSPHTVISHLPIHQDGSCNGLQHYAALGRNSLEASAVNLVAGEKP 539
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
ADVYSEIA RVHEIMKRDSNKDP+ P+ALLAK+LI QVDRKLVKQTVMTSVYGVT++GA
Sbjct: 540 ADVYSEIAARVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGA 599
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
REQIKRRL EKG ITD+R LF AACYAAKV+
Sbjct: 600 REQIKRRLAEKGLITDERLLFTAACYAAKVT 630
>gi|62750825|emb|CAC80139.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 989
Score = 1069 bits (2765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/697 (71%), Positives = 602/697 (86%), Gaps = 6/697 (0%)
Query: 141 RIFVQDPPWFSSIFLKGLYKR---IKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEY 197
RIF+QDPPW +++F+KGL ++L E++E+++ K+NLLRRRQ+K ETEAWE MV+EY
Sbjct: 118 RIFMQDPPWVNTLFMKGLVDSNTGLRL-EFKEIEREKYNLLRRRQIKAETEAWESMVEEY 176
Query: 198 KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPAD 257
+E +M +K+LAPNLP +K LFLGWF PL +AIE+EQK QR++KQKA Y HI++LPAD
Sbjct: 177 REFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEKEQKSQRSRKQKAIYGYHIDMLPAD 236
Query: 258 KVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
K+AVIVMHKMM L+M G++ CV++VQAA+ IG AIEQEI+IHSFLEKTKN ++ +D
Sbjct: 237 KMAVIVMHKMMSLLMVGNDAGCVRLVQAALQIGTAIEQEIKIHSFLEKTKNIRKNA--SD 294
Query: 318 TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA 377
E L KEKE+ R RV SLIK KR+ EA KL+ +E++K W +DTQAKLGSRL+ELLI+TA
Sbjct: 295 LPEDLLKEKEIQRNRVKSLIKRKRLFEAAKLVTSEDSKSWSQDTQAKLGSRLIELLIDTA 354
Query: 378 YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML 437
Y+QHP + + +PPDVRPAFRH+FK + GQ+ KRYGV+ECDPLVL+G+DRSA++M+
Sbjct: 355 YIQHPTSQSADTPPDVRPAFRHKFKILNNELGQQVVKRYGVIECDPLVLKGIDRSARYMI 414
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
IPYVPML+PPK WKGY+KGGYLFLPSYVMRTHGSRKQQ+A++ M+KVFEAL+TLG
Sbjct: 415 IPYVPMLIPPKNWKGYDKGGYLFLPSYVMRTHGSRKQQDAMRKTPPQQMQKVFEALNTLG 474
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
TKWR+N++VL V+E++W SGGNI GLV+ +DV +PEKPL+ED E+ WKWSVRKAKKI
Sbjct: 475 HTKWRINRKVLGVVENLWASGGNIGGLVNCDDVPLPEKPLTEDPAEIDTWKWSVRKAKKI 534
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
N+ERH+ RCD ELK+SVA++MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRGVLEF
Sbjct: 535 NRERHALRCDVELKISVAQKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEF 594
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
A GRPLGK+GL WLKIHLAN+++GGV+KLS++ R AFVENHL E+FDSA NPING+RWWL
Sbjct: 595 ASGRPLGKTGLHWLKIHLANVYAGGVDKLSYEARAAFVENHLEEVFDSATNPINGNRWWL 654
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
+AEDPFQCLAACI+L+ AL SSSPHS IS+LPIHQDGSCNGLQHYAALGR++ EAAAVNL
Sbjct: 655 SAEDPFQCLAACIDLTGALNSSSPHSFISYLPIHQDGSCNGLQHYAALGRDSKEAAAVNL 714
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
VAGE+PADVYSEIAVRV EIM++DS KDP P A+LAK+L+DQVDRKLVKQTVMTSVYG
Sbjct: 715 VAGEEPADVYSEIAVRVREIMEKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYG 774
Query: 798 VTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
VTFVGAREQIKRRLEEKG ITDDR LF+AACY+AKV+
Sbjct: 775 VTFVGAREQIKRRLEEKGVITDDRLLFSAACYSAKVT 811
>gi|110740738|dbj|BAE98468.1| chloroplast single subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 786
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/721 (71%), Positives = 599/721 (83%), Gaps = 13/721 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 E 805
E
Sbjct: 786 E 786
>gi|59800202|sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic;
AltName: Full=NsRpoT-C; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3;
Flags: Precursor
gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName: Full=DNA-directed RNA polymerase 3A, chloroplastic;
AltName: Full=NictaRpoT3-syl; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3A;
Flags: Precursor
gi|21425641|emb|CAC82576.3| phage-type RNA polymerase [Nicotiana sylvestris]
gi|21425679|emb|CAC95027.2| plastid RNA polymerase [Nicotiana tabacum]
gi|24475541|dbj|BAC22693.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|24475543|dbj|BAC22694.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 977
Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/752 (67%), Positives = 616/752 (81%), Gaps = 20/752 (2%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LGKSGLRWLKIHLA+L++GG+EKL +D RLAFVENH+ +I DSA NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
AREQIKRRLEEKG I DDR LF A+CYAAKV+
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 799
>gi|356562547|ref|XP_003549531.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 951
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/705 (70%), Positives = 598/705 (84%), Gaps = 11/705 (1%)
Query: 131 HQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW 190
HQ +P +RIF+Q+ PW + L L + E ++K NLLRRRQ+K ETEA
Sbjct: 78 HQTEPPDPPQRIFIQNSPWILNDLL--------LNDIEE--EKKLNLLRRRQIKAETEAL 127
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
E+MV+EY+ELE +M EK L PNLPH+K LFLGWF PL EAIE EQK +R+KK KAA+APH
Sbjct: 128 EKMVEEYRELEREMREKNLTPNLPHVKALFLGWFDPLKEAIEAEQKSKRSKKHKAAFAPH 187
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
I+ LPA K+AVIVMHK+MGLV + CV +V AAV IGMA+EQE+RIH FLEKT+++
Sbjct: 188 IDSLPAAKLAVIVMHKVMGLVTQEYRRAGCVLLVDAAVQIGMAVEQEVRIHKFLEKTRSH 247
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
+ KK A E+ + +K+ LRK VN LIK +R+ + Q LLK +E+ PWGRDTQAKLGSRL
Sbjct: 248 QSKKTEAGDEDSMDNDKQKLRKHVNGLIKRRRLKQVQMLLKEKESGPWGRDTQAKLGSRL 307
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+ELLIETA+V PVN + +PPD+RPAFRH+FK I K+P QK K YGV+ECDPLVL G+
Sbjct: 308 IELLIETAFVHSPVNQSADTPPDIRPAFRHKFKAISKNPEQKILKNYGVIECDPLVLAGM 367
Query: 430 DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
D+S KHML+PY+PMLVPPKKWKGY KGG+LFLPSY+MRTHGS+KQQ+ +K+V M+KV
Sbjct: 368 DKSVKHMLMPYMPMLVPPKKWKGYEKGGHLFLPSYIMRTHGSKKQQDVMKNVERKQMQKV 427
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
FEALDTLG+TKWRVN+++L+V+ES+W GGNIAGL+DR DV IPE+P D+ ++Q+WKW
Sbjct: 428 FEALDTLGNTKWRVNRRLLNVVESLWAGGGNIAGLIDRKDVPIPERPPLGDLKQIQEWKW 487
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
SVRKA+KIN ERHS RCDTELKLSVA++MKDEEGFYYPHN+DFRGRAYPMH HLNHLS D
Sbjct: 488 SVRKAEKINLERHSLRCDTELKLSVAQKMKDEEGFYYPHNVDFRGRAYPMHSHLNHLSCD 547
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+CRG+LEFAEGRPLG+SGL WLKIHLANL++GG+EKLS+DGRLAFVENHL++IFDSA+NP
Sbjct: 548 LCRGLLEFAEGRPLGESGLCWLKIHLANLYAGGIEKLSYDGRLAFVENHLHDIFDSADNP 607
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
ING+RWWL A+DPFQCLAACINLSEAL+SSSP+SVI HLPIHQDGSCNGLQHYAALGR++
Sbjct: 608 INGNRWWLMADDPFQCLAACINLSEALRSSSPNSVILHLPIHQDGSCNGLQHYAALGRDS 667
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
LEAAAVNLVA EKPADVYSEIAVRVH+IM++D KDP+ +P ALLAK+LIDQ+DRKLVKQ
Sbjct: 668 LEAAAVNLVASEKPADVYSEIAVRVHDIMRKDCIKDPAAYPNALLAKVLIDQIDRKLVKQ 727
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
TVMTSVYGVTFVGAREQIKRRLEEKG ITD++ LFAAACYAAKV+
Sbjct: 728 TVMTSVYGVTFVGAREQIKRRLEEKGLITDEKLLFAAACYAAKVT 772
>gi|356514404|ref|XP_003525896.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 973
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/696 (70%), Positives = 591/696 (84%), Gaps = 6/696 (0%)
Query: 141 RIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKEL 200
RIFVQ+PPW +FLKGL + + ++ ++ K+NLLRRRQ++ ETEAWE+MV+EY+EL
Sbjct: 104 RIFVQEPPW---LFLKGLLMQEEEMRQKDKEREKYNLLRRRQIEAETEAWEKMVEEYREL 160
Query: 201 EAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT--KKQKAAYAPHIELLPADK 258
E +M EK LAPNLPH+K L LGWF P A+E EQ R KKQ+ + APH++ LPADK
Sbjct: 161 EREMREKMLAPNLPHVKSLLLGWFEPFRAAVEAEQTAHRARPKKQQDSIAPHVDDLPADK 220
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
VAVIVMHKMM +VM +E+ CVQ+V AAVHIGMA+EQE+RIH F+E K+ + KK D
Sbjct: 221 VAVIVMHKMMAMVME-NEEGCVQLVHAAVHIGMALEQEVRIHKFVEGNKSSQSKKTEGDA 279
Query: 319 EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAY 378
E+ L +KE R +NSL+K R+ E Q +L+ EE PW RDTQAKLGSRLVELLI+TAY
Sbjct: 280 EDSLDSDKEKQRNYLNSLLKKNRLREVQMILRKEECSPWSRDTQAKLGSRLVELLIDTAY 339
Query: 379 VQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
V PVN + +PPD+RPAFRH FK + HPGQK +K+YG+++CDPLVL GL++ AKHMLI
Sbjct: 340 VHSPVNQSADTPPDIRPAFRHGFKAVPWHPGQKFSKKYGIIQCDPLVLVGLEKCAKHMLI 399
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498
PY+PML+PPKKWKGY+KGG+LFLPSY+MRTHGS+KQQ+ +K+V G M+KVFEALD LG+
Sbjct: 400 PYMPMLIPPKKWKGYDKGGHLFLPSYIMRTHGSKKQQDVMKNVDGAQMQKVFEALDILGN 459
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
TKWRVN++VL V+ESIW GGNIAGLVD DV P+KPL ED+ +Q+WK +VRKAKKIN
Sbjct: 460 TKWRVNRRVLGVVESIWAGGGNIAGLVDCKDVPKPDKPLVEDLKLIQEWKCNVRKAKKIN 519
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
ERHS RCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFA
Sbjct: 520 LERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFA 579
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EGRPLGKSGLRWLKIHLANL++GG+EK S+DGRL F+E+H+++IFDSA++PING+RWWLT
Sbjct: 580 EGRPLGKSGLRWLKIHLANLYAGGIEKQSYDGRLGFIEDHIHDIFDSADHPINGNRWWLT 639
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
AEDPFQCLAACINLSEAL+SSSP+S ISHLPIHQDGSCNGLQHYAALGR+ LEAAAVNLV
Sbjct: 640 AEDPFQCLAACINLSEALRSSSPNSFISHLPIHQDGSCNGLQHYAALGRDDLEAAAVNLV 699
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
A EKPADVY+EIAVRV++IM++DSNKDP P ALLAK+LIDQ+DRKLVKQTVMTSVYGV
Sbjct: 700 AKEKPADVYTEIAVRVYDIMRQDSNKDPDTFPNALLAKVLIDQIDRKLVKQTVMTSVYGV 759
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
T++GAREQIKRRL EKG +TDDR L+AA+CYAAKV+
Sbjct: 760 TYIGAREQIKRRLGEKGFVTDDRLLYAASCYAAKVT 795
>gi|356510622|ref|XP_003524036.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Glycine max]
Length = 1043
Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/696 (70%), Positives = 586/696 (84%), Gaps = 6/696 (0%)
Query: 141 RIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKEL 200
RIFVQ+PPW +FLKGL + + + ++ K+NLLRRRQ++ ETEAWERMV+EY+EL
Sbjct: 174 RIFVQEPPW---LFLKGLLMQEEEMRQKGKEREKYNLLRRRQIEAETEAWERMVEEYREL 230
Query: 201 EAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ--RTKKQKAAYAPHIELLPADK 258
E +M EK LAPNLPH+K L LGWF P A+E EQ R KKQ+ + APH++ LPADK
Sbjct: 231 EREMREKMLAPNLPHVKALLLGWFEPFRAAVEAEQTAHHARPKKQQDSIAPHVDDLPADK 290
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
VAVIVMHKMM +VM E+ CVQ+V AA+HIG+A+EQE+RIH F+E K+ + KK D
Sbjct: 291 VAVIVMHKMMAMVMES-EEGCVQLVHAAIHIGLALEQEVRIHKFIEGNKSNRSKKTEGDA 349
Query: 319 EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAY 378
E+ L +KE R +NSL+K R+ E Q +L+ EE PW +DTQAKLGSRL+ELLI+TAY
Sbjct: 350 EDSLDSDKEKQRNYLNSLLKKNRLREVQMILRKEECSPWSQDTQAKLGSRLIELLIDTAY 409
Query: 379 VQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
V PVN + +PPD+RPAFRH FK + HPGQK +K+YGV++CDPLVL GL++ AKHMLI
Sbjct: 410 VHSPVNQSADTPPDIRPAFRHGFKAVPWHPGQKFSKKYGVIQCDPLVLVGLEKCAKHMLI 469
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498
PY+PML+PPKKWKGY+KGG+LFLPSY+MRTHGSRKQQ+ +K+V G M+KVFE LD LG+
Sbjct: 470 PYMPMLIPPKKWKGYDKGGHLFLPSYIMRTHGSRKQQDVMKNVNGAQMQKVFETLDILGN 529
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
TKWRVN+++L V+ESIW GGNIAGLVD DV P+KP ED+ +Q+WK SVRKAKKIN
Sbjct: 530 TKWRVNRRMLGVVESIWAGGGNIAGLVDCKDVPKPDKPPVEDLKLIQEWKCSVRKAKKIN 589
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
ERHS RCDTELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFA
Sbjct: 590 LERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFA 649
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EGRPLGKSGLRWLKIHLANL++GG+EK S+DGRL F+E+H+++IFDSA++PING+RWWLT
Sbjct: 650 EGRPLGKSGLRWLKIHLANLYAGGIEKHSYDGRLGFIEDHIHDIFDSADHPINGNRWWLT 709
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
AEDPFQCLAACINLSEAL+SSSP+S ISHLPIHQDGSCNGLQHYAALGR+ LEAAAVNLV
Sbjct: 710 AEDPFQCLAACINLSEALRSSSPNSFISHLPIHQDGSCNGLQHYAALGRDNLEAAAVNLV 769
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
A EKPADVY+EIAVRV++IM+RDSNKDP P ALLAK+L+ Q+DRKLVKQTVMTSVYGV
Sbjct: 770 AKEKPADVYTEIAVRVYDIMRRDSNKDPDTFPNALLAKVLLGQIDRKLVKQTVMTSVYGV 829
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
T++GAREQIKRRL EKG ITDDR L+AA+CYAAKV+
Sbjct: 830 TYIGAREQIKRRLGEKGLITDDRLLYAASCYAAKVT 865
>gi|88933967|sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic;
AltName: Full=NictaRpoT3-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 3B;
Flags: Precursor
gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase [Nicotiana tabacum]
Length = 977
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/705 (71%), Positives = 603/705 (85%), Gaps = 7/705 (0%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAW 190
E +R+F+QDPPW SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAW
Sbjct: 95 ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
E+MV+EY+ELE +M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APH
Sbjct: 155 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214
Query: 251 IELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
I+ LPADK+AVIVMHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK
Sbjct: 215 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 274
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
++ A ++E +SKE +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL
Sbjct: 275 QKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRL 334
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+ELL ETAYVQ PV+ + +PPD+RPAFRH FK + PG+ K+YGV+ECDPLV+ G+
Sbjct: 335 LELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGV 394
Query: 430 DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
DR+ K M+IPYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++ V M++V
Sbjct: 395 DRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQV 454
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
+EALDTLGSTKWRVNK++L+V+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW
Sbjct: 455 YEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKW 514
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
VRK+KKINQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD
Sbjct: 515 KVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 574
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+CRG+LEFAEGRPLGKSGLRWLKIHLA+L++GGVEKL +D RLAFVENH+++I DSA NP
Sbjct: 575 LCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNP 634
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
+NG+RWWL AEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR++
Sbjct: 635 LNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDS 694
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
+EAAAVNLVAGEKPADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQ
Sbjct: 695 MEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQ 754
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
TVMTSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKV+
Sbjct: 755 TVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 799
>gi|308026130|emb|CBL69150.1| RNA polymerase [Nuphar advena]
Length = 985
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/697 (64%), Positives = 567/697 (81%), Gaps = 7/697 (1%)
Query: 141 RIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKEL 200
R+F+ DPPW ++ +R + RE + K+NLLRRRQVK ETEAWE EY+EL
Sbjct: 115 RVFLLDPPWLPGGLVQ---ERGRPARERERESSKYNLLRRRQVKMETEAWEDAAREYREL 171
Query: 201 EAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQK--AAYAPHIELLPADK 258
+M EK+LAP+LP++K LFLGWF P +AI+ +Q++QR +K+ AAYAP I LPAD
Sbjct: 172 IKEMCEKKLAPHLPYVKSLFLGWFEPFRDAIKEDQELQRRRKKNLAAAYAPFIGHLPADM 231
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK-KIIAD 317
+AVIVMHKMM L+M G +D CV++V AA HIG AIEQE+RI++F +K K R+ +I+++
Sbjct: 232 MAVIVMHKMMVLLMNGQDDGCVRLVHAACHIGEAIEQEVRIYNFFQKIKKSTRENQILSE 291
Query: 318 TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA 377
E SK +E LRKRV +L+K K++ + Q L++ ++ +PWGRD+ AKLGSR ++LLI+T
Sbjct: 292 NHENESKNQEALRKRVTNLLKKKKIRDVQLLVEADDVEPWGRDSHAKLGSRXIDLLIQTX 351
Query: 378 YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML 437
YVQ P+N PP++RPAFRH FKT K + KRYG++ECDPLV +GLD +A+H++
Sbjct: 352 YVQPPLNQLAZGPPEIRPAFRHTFKTX-KKEXDNSVKRYGIIECDPLVRKGLDATARHLV 410
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
IPY+PML+PPKKW GY+KGG+LFLPSYVMRTHG+++Q++ALKSV +K+VFEALDTLG
Sbjct: 411 IPYMPMLIPPKKWTGYDKGGHLFLPSYVMRTHGAKQQRDALKSVPKXQLKEVFEALDTLG 470
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
STKWRVNK+VL V++S+W SG IAGLVD +D+ +PEKP +ED ++++W+WSV+K KK
Sbjct: 471 STKWRVNKRVLDVIDSLWASGRPIAGLVDHSDIALPEKPCTEDEAQMRRWRWSVKKVKKE 530
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
N ERH+QRCD ELKLSVAR+M+ E+GFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEF
Sbjct: 531 NCERHAQRCDIELKLSVARKMRKEDGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEF 590
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
AEG+PLGK+GLRWLKIHLANL+ GGV+KLS DGRL FVENHL +IFDSAE PI G +WWL
Sbjct: 591 AEGKPLGKTGLRWLKIHLANLYGGGVDKLSFDGRLTFVENHLADIFDSAERPIEGRQWWL 650
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
AEDPFQCLAACI+LS ALKSSSP ISH+P+H DGSCNGLQHYAALGR+ L AA+VNL
Sbjct: 651 NAEDPFQCLAACIDLSXALKSSSPEDAISHIPVHLDGSCNGLQHYAALGRDRLGAASVNL 710
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
V+GEKP DVYS IA RV EI+ RDS KDP+ HP +LLA+ILIDQVDRKLVKQTVMTSVYG
Sbjct: 711 VSGEKPXDVYSGIAARVMEIVVRDSKKDPAVHPTSLLARILIDQVDRKLVKQTVMTSVYG 770
Query: 798 VTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
VT++GAR+QIKRRL+E+ ITDD+ LF+AACYAAKV+
Sbjct: 771 VTYIGARDQIKRRLKERDFITDDKLLFSAACYAAKVT 807
>gi|48716693|dbj|BAD23376.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|48716846|dbj|BAD23544.1| putative phage-type RNA polymerase [Oryza sativa Japonica Group]
gi|215694941|dbj|BAG90132.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 951
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/667 (63%), Positives = 545/667 (81%), Gaps = 9/667 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 236 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 295
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV-----LSKEKELLRKRVNSLIKSKRVMEAQKL 348
E E+RIH FLEKTK K++ D EE ++KE+E LRK+V L+K +++ + + +
Sbjct: 296 EHEVRIHKFLEKTKKKSNKEM--DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 353
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
+K ++ +KPWG+D AK+GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 354 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 413
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMR
Sbjct: 414 Q-QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMR 472
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q++A++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 473 THGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDR 532
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
DV +PEKP +ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYP
Sbjct: 533 TDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYP 592
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS
Sbjct: 593 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLS 652
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH
Sbjct: 653 YDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISH 712
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+
Sbjct: 713 IPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPA 772
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+
Sbjct: 773 TDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSAS 832
Query: 828 CYAAKVS 834
CYAAKV+
Sbjct: 833 CYAAKVT 839
>gi|222641119|gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/667 (63%), Positives = 545/667 (81%), Gaps = 9/667 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 142 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 201
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 202 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 261
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV-----LSKEKELLRKRVNSLIKSKRVMEAQKL 348
E E+RIH FLEKTK K++ D EE ++KE+E LRK+V L+K +++ + + +
Sbjct: 262 EHEVRIHKFLEKTKKKSNKEM--DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 319
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
+K ++ +KPWG+D AK+GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 320 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 379
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMR
Sbjct: 380 Q-QKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMR 438
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q++A++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 439 THGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDR 498
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
DV +PEKP +ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYP
Sbjct: 499 TDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYP 558
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS
Sbjct: 559 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLS 618
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH
Sbjct: 619 YDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISH 678
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+
Sbjct: 679 IPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPA 738
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+
Sbjct: 739 TDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSAS 798
Query: 828 CYAAKVS 834
CYAAKV+
Sbjct: 799 CYAAKVT 805
>gi|115478128|ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica Group]
gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza sativa Japonica Group]
Length = 1017
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/667 (63%), Positives = 545/667 (81%), Gaps = 9/667 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 176 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 235
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 236 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 295
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEV-----LSKEKELLRKRVNSLIKSKRVMEAQKL 348
E E+RIH FLEKTK K++ D EE ++KE+E LRK+V L+K +++ + + +
Sbjct: 296 EHEVRIHKFLEKTKKKSNKEM--DNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNI 353
Query: 349 LKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
+K ++ +KPWG+D AK+GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 354 VKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE 413
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMR
Sbjct: 414 -QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMR 472
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
THG+R+Q++A++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 473 THGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDR 532
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
DV +PEKP +ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYP
Sbjct: 533 TDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYP 592
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS
Sbjct: 593 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLS 652
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH
Sbjct: 653 YDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISH 712
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+
Sbjct: 713 IPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPA 772
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+
Sbjct: 773 TDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSAS 832
Query: 828 CYAAKVS 834
CYAAKV+
Sbjct: 833 CYAAKVT 839
>gi|88933966|sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/668 (63%), Positives = 542/668 (81%), Gaps = 5/668 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 178 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 237
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA ++ LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 238 KIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 297
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 298 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 356
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL+ELL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 357 IVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAK 416
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 417 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 475
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLGSTKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 476 RTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVD 535
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEEGF+Y
Sbjct: 536 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFY 595
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 596 PHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKL 655
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+AF ENH+ +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + IS
Sbjct: 656 SLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSIS 715
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 716 HIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 775
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 776 AEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 835
Query: 827 ACYAAKVS 834
ACYAAKV+
Sbjct: 836 ACYAAKVT 843
>gi|225425009|ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/663 (63%), Positives = 535/663 (80%), Gaps = 3/663 (0%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K N+LRRRQ+K ETEAWE EY+EL + M E++LAPNLP+IK LFLGWF PL + I
Sbjct: 139 KHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAA 198
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ + + K +AAYAP+ + LPAD +AVI MHK+MGL+M G + +VVQAA HIG AI
Sbjct: 199 EQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAI 258
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADT-EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK-N 351
E E+RI F+EKTK D ++KE+E LRK+V+ L+K +++ + ++++K
Sbjct: 259 EHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQ 318
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+++KPWG+D K+GSRL+ELLIETAY+Q P + PPD+RPAF H KT++K QK
Sbjct: 319 DDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKET-QK 377
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
T+RYGV+ECDPLV +GL+++A+HM+IPY+PMLVPP W GY+KG YLFLPSYVMR HG+
Sbjct: 378 GTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGA 437
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
R+Q+EA+K ++ FEAL+TLG+TKWR+NK+VL V++ IW SGG +A LVDR DV
Sbjct: 438 RQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVP 497
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+PE+P +ED E++KWKW VR KK N ERHSQRCD ELKL+VAR+MKDE+GF+YPHNLD
Sbjct: 498 LPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLD 557
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN+++GGV+KLS++GR
Sbjct: 558 FRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGR 617
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+AF ENHL +IFDSA+ P+ G RWWL+AEDPFQCLA CINLSEAL+SSSP + ISH+P+H
Sbjct: 618 VAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVH 677
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IM+RD+ KDP+ P
Sbjct: 678 QDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPN 737
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
AL A++LI QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I D+ ++F+A+CYAA
Sbjct: 738 ALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAA 797
Query: 832 KVS 834
K +
Sbjct: 798 KTT 800
>gi|308026305|emb|CBL87031.1| RNA polymerase [Nuphar advena]
Length = 990
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/754 (58%), Positives = 570/754 (75%), Gaps = 16/754 (2%)
Query: 86 FMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQ 145
+ ++EN F C + +F +R + A + + +ST+ +E + + +
Sbjct: 76 YRRSVENQASF---LCFLDDDFRRRAGEMQGFAS--VAEAVSSTDEDTSAIEEIKGLVER 130
Query: 146 DPPWFSSIFLK---GLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEA 202
FS K G ++ + ++ + K+N L+RRQ+K ETEAWE+ EYKEL
Sbjct: 131 ----FSEEVFKEKEGEFRGKRRTKFGNLGYAKYNALKRRQIKIETEAWEQAAKEYKELMM 186
Query: 203 KMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVI 262
M + +LA NLP+IK LFLGWF PL + I EQ+ R K +AAY P++ LPA+ +AVI
Sbjct: 187 DMCKNKLAXNLPYIKSLFLGWFEPLRDRIASEQEACRRGKCRAAYGPYLNRLPAEMMAVI 246
Query: 263 VMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EV 321
MHK++GL+M + C +VVQAA IG AIE E RIHSFLEKTK + +A+ E E
Sbjct: 247 TMHKLVGLMMTSGDHGCARVVQAACRIGDAIENESRIHSFLEKTKKKHARGNMAEEEPET 306
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQ 380
++KEKE LRK+V +LIK +++ + KL+K +++ PWG + AK+G L+ELLIETAY+Q
Sbjct: 307 VTKEKEFLRKKVTNLIKKQKLRQVTKLVKGKDDSAPWGVEAHAKVGCHLIELLIETAYIQ 366
Query: 381 HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY 440
P++ PPD+RPAFRH + + K ++RYGV+ECDPLV +GLD++A+H +IPY
Sbjct: 367 PPLDQTVDGPPDIRPAFRHSLRNVSKEQSS-NSRRYGVIECDPLVRKGLDKTARHTVIPY 425
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PMLVPP W GY+KG +LFLPSY+MRTHGSR+Q+EA+K ++ +FEALDTLGSTK
Sbjct: 426 MPMLVPPLCWTGYDKGAHLFLPSYIMRTHGSRQQREAVKRTPTQQLQSIFEALDTLGSTK 485
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
WR+NK++L+V+E IW SGGN+AGLVD D +PEKP +ED ++KWKWS+R KK N E
Sbjct: 486 WRINKRLLAVVERIWASGGNLAGLVDCEDAPLPEKPDTEDEAVLRKWKWSLRNTKKENSE 545
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
+HSQRCD ELKLSVAR+MK+EEGFYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEG
Sbjct: 546 KHSQRCDVELKLSVARKMKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 605
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
RPLGKSGLRWLKIHLANL++GGV+KLS+DGRLAFVENHL +IFDSA+ P+ GSRWWL AE
Sbjct: 606 RPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFVENHLDDIFDSADKPLEGSRWWLGAE 665
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DPFQCLAACINLSEAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L AA+VNLVAG
Sbjct: 666 DPFQCLAACINLSEALRSSSPDTTISHVPVHQDGSCNGLQHYAALGRDKLGAASVNLVAG 725
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
EKPADVYS IA V EIM+RDS KDP+ +P A+ A++LIDQVDRKLVKQTVMTSVYGVT+
Sbjct: 726 EKPADVYSGIASGVLEIMRRDSQKDPANNPSAVRARLLIDQVDRKLVKQTVMTSVYGVTY 785
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+GAR+QIK+RL+E+ I +D Q+F AACYAAK +
Sbjct: 786 IGARDQIKKRLKERDVIPED-QVFGAACYAAKTT 818
>gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase [Nicotiana sylvestris]
Length = 1020
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/668 (63%), Positives = 541/668 (80%), Gaps = 5/668 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAK 415
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 416 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 475 RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+Y
Sbjct: 535 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 595 PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+ F ENH+ +IFDS++ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +S
Sbjct: 655 SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 715 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 774
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 775 AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834
Query: 827 ACYAAKVS 834
ACYAAKV+
Sbjct: 835 ACYAAKVT 842
>gi|357155565|ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/669 (63%), Positives = 541/669 (80%), Gaps = 5/669 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+ LR+RQV+ ETEAWE+ EY+EL A M E +LAPNLP++K LFLGWF PL +
Sbjct: 147 MGSSKYAALRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRD 206
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ + +A++AP+ +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 207 QIIAEQELVGERGARASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 266
Query: 290 GMAIEQEIRIHSFLEKTKNYKR---KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E+RIH FLEKTK ++ + ++KE++ LRK+V L+K +++ + +
Sbjct: 267 GEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSDIAKEQQRLRKKVTDLMKKQKIRQVR 326
Query: 347 KLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
++K ++ T+PWG+D AK+GSRL+ELLIETA++Q PV+ + S PD+RPAF H +T+
Sbjct: 327 NIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSADSTPDIRPAFTHEMRTVT 386
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
+ QK+++RYGV++CDPL+ +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYV
Sbjct: 387 RE-QQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYV 445
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+R+Q+EA+K M+ +FEALDTLGSTKWR+NK+VLS+++ IW SGG +A LV
Sbjct: 446 MRTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLSIVDRIWSSGGRLADLV 505
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PEKP +ED TE++KW+W++R KK N ERHSQRCD ELKL+VAR+MKDE GFY
Sbjct: 506 DRTDVALPEKPDTEDETELKKWRWNLRSVKKENSERHSQRCDVELKLAVARKMKDEVGFY 565
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRGVLEF+EGRPLG SGL WLKIHLANL++GGV+K
Sbjct: 566 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGDSGLCWLKIHLANLYAGGVDK 625
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS+DGR+AF ENHL +IFDSA P+ G RWWL AEDPFQCLA C++L+EAL+SSSP ++I
Sbjct: 626 LSYDGRIAFTENHLEDIFDSANRPLEGKRWWLGAEDPFQCLAVCMDLTEALRSSSPEAMI 685
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SH+P+HQDGSCNGLQHYAALGR+ L A AVNLV+GEKPADVYS IA RV EIM+RD+ KD
Sbjct: 686 SHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVSGEKPADVYSGIATRVVEIMRRDAQKD 745
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+G I DD +LFA
Sbjct: 746 PALDPDAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIGDDSELFA 805
Query: 826 AACYAAKVS 834
A+CYAAKV+
Sbjct: 806 ASCYAAKVT 814
>gi|17221593|dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
gi|17221595|dbj|BAB78465.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1020
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/668 (62%), Positives = 540/668 (80%), Gaps = 5/668 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+ PAF H +T+ K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRTVAK 415
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 416 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 475 RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED + KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+Y
Sbjct: 535 RDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 595 PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+ F ENH+ +IFDS++ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +S
Sbjct: 655 SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPA+ YS IA RV +IMKRD+ +DP
Sbjct: 715 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIMKRDAQRDP 774
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 775 AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834
Query: 827 ACYAAKVS 834
ACYAAKV+
Sbjct: 835 ACYAAKVT 842
>gi|242046328|ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/670 (62%), Positives = 538/670 (80%), Gaps = 6/670 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++ LRRRQ++ ETEAWE+ EY+EL A M E++LAPNLP+IK LFLGWF PL +
Sbjct: 130 MTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLRD 189
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ +A++ P+ +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 190 QIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 249
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKII----ADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
G AIE E+RI+ FLEKT+ K++ A + ++KE++ LRK+V L+K +++ +
Sbjct: 250 GEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQV 309
Query: 346 QKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTI 404
+ ++KN++ ++PWG+D QAK+GSRL+EL ++TA++Q P + + PD+RPAFRH +T+
Sbjct: 310 RNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTV 369
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
K QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSY
Sbjct: 370 AKE-QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSY 428
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
VMRTHG+R+Q+EA+K M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A L
Sbjct: 429 VMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADL 488
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
VDR DV +PEKP +ED T ++ WKW +R KK N ERHSQRCD ELKL+VAR+MKDEEGF
Sbjct: 489 VDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGF 548
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
YYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGL WLKIHLANL++GGV+
Sbjct: 549 YYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVD 608
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
KLS+DGR+AF ENHL EIFDSA+ P+ G RWWL AEDPFQCLA C+NL+EAL+SSSP +
Sbjct: 609 KLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETT 668
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISH+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIM+ D+ K
Sbjct: 669 ISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQK 728
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
DPS P A++++DQVDRKLVKQTVMTSVYGVT+VGAR+QIKRRL+E+G I D+ +LF
Sbjct: 729 DPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEAELF 788
Query: 825 AAACYAAKVS 834
A+CYAAKV+
Sbjct: 789 GASCYAAKVT 798
>gi|297811707|ref|XP_002873737.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
gi|297319574|gb|EFH49996.1| DNA-directed RNA polymerase [Arabidopsis lyrata subsp. lyrata]
Length = 1009
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/682 (63%), Positives = 538/682 (78%), Gaps = 18/682 (2%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K QE M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQEQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEE-------VLSKEKELLRKRV 333
+VV AA +G AIEQEIRI +FL+KT RKK + EE KE++ LRK+V
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKT----RKKKGDENEESGEVENGTSMKEQDKLRKKV 335
Query: 334 NSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD 392
N LIK +++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PD
Sbjct: 336 NELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPD 395
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
VRPAF H F+ + ++YGV+ECDPLV +GL++S ++ +IPY+PMLVPP KW G
Sbjct: 396 VRPAFVHTFRI------ANSGRKYGVIECDPLVRKGLEKSGRYAVIPYMPMLVPPLKWSG 449
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KG YLFL SY+M+THGS++Q+EALKS + VFEALDTLGSTKWRVNK+VL+V++
Sbjct: 450 YDKGAYLFLASYIMKTHGSKQQREALKSAPKGQLLPVFEALDTLGSTKWRVNKRVLTVVD 509
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
IW SGG A LVDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKL
Sbjct: 510 RIWSSGGCTADLVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKL 569
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
SVAR+MKDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRPLG SGLRWLK
Sbjct: 570 SVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPLGISGLRWLK 629
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IHLANL++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CINL
Sbjct: 630 IHLANLYAGGVDKLSLDGRLAFTENHLEDIFDSADRPLEGSRWWLQAEDPFQCLAVCINL 689
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+EAL+S SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA
Sbjct: 690 TEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIAT 749
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV +IM+RD+++DP +P AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+
Sbjct: 750 RVLDIMRRDADRDPEAYPDALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 809
Query: 813 EKGHITDDRQLFAAACYAAKVS 834
E+ D++++F AACYAAKV+
Sbjct: 810 ERSDFGDEKEIFGAACYAAKVT 831
>gi|2326363|emb|CAA04491.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1011
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/676 (63%), Positives = 539/676 (79%), Gaps = 4/676 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+MRTHG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMRTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYSEIA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSEIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVS 834
D++++F AACYAAKV+
Sbjct: 818 DEKEVFGAACYAAKVT 833
>gi|334187707|ref|NP_001190318.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|332004811|gb|AED92194.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1051
Score = 899 bits (2324), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/676 (62%), Positives = 538/676 (79%), Gaps = 4/676 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+M+THG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVS 834
D++++F AACYAAKV+
Sbjct: 818 DEKEVFGAACYAAKVT 833
>gi|15242369|ref|NP_197074.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
gi|75311147|sp|Q9LFV6.1|RPOT2_ARATH RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; Flags: Precursor
gi|9755615|emb|CAC01769.1| DNA-directed RNA polymerase (mitochondrial) [Arabidopsis thaliana]
gi|11340683|emb|CAC17120.1| phage-type RNA polymerase rpoT2 [Arabidopsis thaliana]
gi|332004810|gb|AED92193.1| DNA-directed RNA polymerase 2 [Arabidopsis thaliana]
Length = 1011
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/676 (62%), Positives = 538/676 (79%), Gaps = 4/676 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+M+THG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVS 834
D++++F AACYAAKV+
Sbjct: 818 DEKEVFGAACYAAKVT 833
>gi|225451858|ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial [Vitis vinifera]
gi|298204431|emb|CBI16911.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/683 (63%), Positives = 552/683 (80%), Gaps = 12/683 (1%)
Query: 160 KRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGL 219
+R KL+ R M++ ++ LRRRQVK ETEAWE EYKEL M E++LAPNLP++K L
Sbjct: 179 RREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSL 238
Query: 220 FLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
FLGWF PL +AI +EQ++ R K KAAYAP+ + LPAD ++VI MHK++GL+M G E
Sbjct: 239 FLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGS 298
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE------EVLSKEKELLRKRV 333
+VVQAA IG AIEQE+RIH+FLEKTK RKK+ D + + E+E LRK+V
Sbjct: 299 TRVVQAACVIGDAIEQEVRIHNFLEKTK---RKKVGKDKNVEGGGFDPVIHEQEKLRKKV 355
Query: 334 NSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPV-NPADYSPP 391
+L+K +++ A++++K ++ +KPWG + +AK+GSRL+ELL++TAY+Q PV N +PP
Sbjct: 356 TNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPP 415
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWK 451
D+RPAF H FKT+++ +K +R+GV+ECDPLV +GL+R+A+HM+IPYVPMLVPP KW
Sbjct: 416 DIRPAFVHTFKTVMRE-AKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWT 474
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVL 511
GY+KG +LFLPSYVMRTHG+R+Q+EA+K N ++ VFEAL+TLG+TKWR+NK++ V+
Sbjct: 475 GYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVV 534
Query: 512 ESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+ IW GG +A LVDRNDV +PEKP +ED +++KWKW V+ KK N ERHSQRCD ELK
Sbjct: 535 DRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELK 594
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L+VAR+MKDE+GF+YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGL WL
Sbjct: 595 LAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWL 654
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANLF+GGV+KLSH+GR+ F ENHL +IFDSA+ P+ G RWWL AEDPFQ LAACIN
Sbjct: 655 KIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACIN 714
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
LSEAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVYS IA
Sbjct: 715 LSEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIA 774
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
RV +IMKRD+ KDP+ P AL A+ILI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL
Sbjct: 775 ARVLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRL 834
Query: 812 EEKGHITDDRQLFAAACYAAKVS 834
+E+ I DD +LF AACYAAK++
Sbjct: 835 KERNAIADDVELFGAACYAAKIT 857
>gi|449447681|ref|XP_004141596.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 984
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/676 (62%), Positives = 536/676 (79%), Gaps = 5/676 (0%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLG 222
+L+ + M + K+N+LRRRQV E EAWE EY+EL M +++LAPNLP++K LFLG
Sbjct: 132 RLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEYRELLVDMCKQKLAPNLPYVKSLFLG 191
Query: 223 WFGPLSEAIEREQKM-QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQ 281
WF P +AI +EQ++ Q K+ +A YAP+ LPADK++VI MHK+MGL+M G E V+
Sbjct: 192 WFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPADKMSVITMHKLMGLLMRGSEHGSVR 251
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTK--NYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
VVQAA IG AIEQE+RIH FLEK K + + D ++ KE+E LRK+V +LIK
Sbjct: 252 VVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDNENNDQPDIERKEQERLRKKVTNLIKK 311
Query: 340 KRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
K+ + A ++ K ++++PWGR+ +AK+G+RL+ELLI+TAY+Q P + PPD RPAF
Sbjct: 312 KKHLAAGQIAKRADDSRPWGRELKAKVGARLIELLIQTAYIQPPADQLADGPPDPRPAFV 371
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H KT +K G R GV+ECDPLV++GLD +A+ ++IPY+PML+PP KW+GY+KGG+
Sbjct: 372 HSLKTSVKD-GTNFMGRLGVIECDPLVVKGLDWTARQIVIPYMPMLMPPVKWRGYDKGGH 430
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ LPS+ MRTHG+++Q++A K + VFEALDTLG+TKWR+NK++L+V+E IW SG
Sbjct: 431 ILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALDTLGNTKWRINKRILNVVERIWTSG 490
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G++AGLVD++DV +PEKP +ED T ++KWKW VR KK N ERHSQRCD ELKL+VAR+M
Sbjct: 491 GHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVRSVKKENMERHSQRCDIELKLTVARKM 550
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEEGFYYPHN+DFRGRAYPMHPHLNHL SD+CRG+LEFAEGR L KSGL WLKIHLANL
Sbjct: 551 KDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLRKSGLIWLKIHLANL 610
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F+GGV+KLSHDGR+ F+ENHL +IFDSA+ P+ G RWW+ AEDPFQ LA C+NL+EAL+S
Sbjct: 611 FAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGGRWWMNAEDPFQFLAGCMNLTEALRS 670
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SSP + ISH+PIHQDGSCNGLQHYAALGR+ AAAVNLVAGEKPADVYS IA RV EI+
Sbjct: 671 SSPETYISHIPIHQDGSCNGLQHYAALGRDKSGAAAVNLVAGEKPADVYSGIAARVLEIL 730
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
KRD+ KDP P AL AKILIDQVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I+
Sbjct: 731 KRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 790
Query: 819 DDRQLFAAACYAAKVS 834
DD +LF +CYAAK++
Sbjct: 791 DDSELFGCSCYAAKIT 806
>gi|414887624|tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
Length = 975
Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/671 (61%), Positives = 538/671 (80%), Gaps = 9/671 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++ LRRRQ++ ETEAWE+ +EY+EL A M E++LAPNLP++K LFLGWF PL +
Sbjct: 130 MTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRD 189
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ +A++ P +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 190 QIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 249
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKI-----IADTEEVLSKEKELLRKRVNSLIKSKRVME 344
G AIE E+RI+ FLEKT+ K++ DT ++ E++ LRK+V L+K +++ +
Sbjct: 250 GEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTN--IAIEQQRLRKKVTDLMKKQKLRQ 307
Query: 345 AQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ ++KN++ ++PWG+D AK+GSRL++L I TA++Q P + + PD+RPAFRH +T
Sbjct: 308 VRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRT 367
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
++K QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPS
Sbjct: 368 MVKE-QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPS 426
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMRTHG+R+Q++A+K M+ VFEAL+TLGSTKWRVNK+VLS+++ IW +GG +A
Sbjct: 427 YVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLAD 486
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR DV +PEKP +ED T ++ WKW +R AKK N ERHSQRCD ELKL+VAR+MKDEEG
Sbjct: 487 LVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEG 546
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++ GV
Sbjct: 547 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGV 606
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLS+DGR+AF ENHL EIFDSA+ P+ G RWWL AEDPFQCLA C+NL+EAL+SSSP +
Sbjct: 607 DKLSYDGRIAFAENHLEEIFDSADRPLEGRRWWLGAEDPFQCLAVCMNLTEALRSSSPET 666
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH+P+HQDGSCNGLQHYAALG++ L A AVNLVAGEKPADVY+ IA RV EIM+ D+
Sbjct: 667 TISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQ 726
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
KDPS P A A++++DQVDRKLVKQTVMTSVYGVT++GAREQI+RRL+E+G I +D +L
Sbjct: 727 KDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSEL 786
Query: 824 FAAACYAAKVS 834
F A+CYAAKV+
Sbjct: 787 FGASCYAAKVT 797
>gi|224099265|ref|XP_002311418.1| predicted protein [Populus trichocarpa]
gi|222851238|gb|EEE88785.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/674 (62%), Positives = 544/674 (80%), Gaps = 17/674 (2%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +L+RRQ+K ETEAWE+ EY+E+ M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 30 KYAILKRRQIKMETEAWEQAAQEYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIVA 89
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC-VQVVQAAVHIGMA 292
EQ++ + + + ++ H LPAD +AVI MHK+MGL+M G+ ++VVQAA +G A
Sbjct: 90 EQELCK-RNLRVSHRAHFSDLPADMMAVITMHKLMGLLMTGNGGSASIRVVQAASVVGEA 148
Query: 293 IEQEIRIHSFLEKTKNYKRKKI---IADTE--------EVLSKEKELLRKRVNSLIKSKR 341
IE E RIH FLEKTK KRK + I++ E E LSKE+E LRK+V +LIK ++
Sbjct: 149 IEHEGRIHKFLEKTK--KRKNVEAKISEGESDAAIEEGEKLSKEQEKLRKKVTTLIKKQK 206
Query: 342 VMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V + ++++K +++++PWG++ K+GSRL++L+IETAY+Q P++ PPD+RPAF H
Sbjct: 207 VQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHT 266
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
KTI K QK+++RYGV+ECDPLV +GL++SA+HM+IPY+PMLVPP W GY++G +LF
Sbjct: 267 LKTITKDT-QKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAHLF 325
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
LPSYVMR HGS++Q++A+K + N ++ VF+ALDTLG+TKWR+NK+VL V++ IW SGG+
Sbjct: 326 LPSYVMRIHGSKQQRDAVKRASRNQLEPVFKALDTLGNTKWRINKRVLVVVDRIWASGGH 385
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+AGLVDR D +PE+P +ED E++KW W VR KK N ERHSQRCD ELKL+VAR+MKD
Sbjct: 386 LAGLVDREDAPLPEEPQTEDEAEIRKWTWKVRSVKKENSERHSQRCDIELKLAVARKMKD 445
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
EEGFYYPHNLDFRGRAYPMHP+LNHL SDVCRG+LEFAEGRPLGKSGLRWLKIHLANL++
Sbjct: 446 EEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYA 505
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GGV+KLS+DGR++F ENHL +IFDSA+ P+ G RWWL AEDPFQCLAACINLSEAL+S S
Sbjct: 506 GGVDKLSYDGRISFTENHLDDIFDSADQPLEGRRWWLGAEDPFQCLAACINLSEALRSPS 565
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + SH P+HQDGSCNGLQHYAALGR+ L AAAVNLV GEKPADVYS IA RV +IM+R
Sbjct: 566 PETATSHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGEKPADVYSGIATRVLDIMQR 625
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D+ KDP+ +P ++ AK+L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD
Sbjct: 626 DAEKDPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCIIADD 685
Query: 821 RQLFAAACYAAKVS 834
QL++AACYAAK +
Sbjct: 686 PQLYSAACYAAKTT 699
>gi|162457737|ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA polymerase [Zea mays]
Length = 975
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/671 (61%), Positives = 537/671 (80%), Gaps = 9/671 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++ LRRRQ++ ETEAWE+ +EY+EL A M E++LAPNLP++K LFLGWF PL +
Sbjct: 130 MTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRD 189
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ +A++ P +LPAD +AVI MHK+MGL+M G D V+V+QAA I
Sbjct: 190 QIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQI 249
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKI-----IADTEEVLSKEKELLRKRVNSLIKSKRVME 344
G AIE E+RI+ FLEKT+ K++ DT ++ E++ LRK+V L+K +++ +
Sbjct: 250 GEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTN--IAVEQQRLRKKVTDLMKKQKLRQ 307
Query: 345 AQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ ++KN++ ++PWG+D AK+GSRL++L I TA++Q P + + PD+RPAFRH +T
Sbjct: 308 VRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRT 367
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
++K QK+++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPS
Sbjct: 368 MVKE-QQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPS 426
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMRTHG+R+Q++A+K M+ VFEAL+TLGSTKWRVNK+VLS+++ IW +GG +A
Sbjct: 427 YVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLAD 486
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR DV +PEKP +ED T ++ WKW +R AKK N ERHSQRCD ELKL+VAR+MKDEEG
Sbjct: 487 LVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEG 546
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++ GV
Sbjct: 547 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGV 606
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLS+DGR+AF ENHL EIFDSA+ P+ G RW L AEDPFQCLA C+NL+EAL+SSSP +
Sbjct: 607 DKLSYDGRIAFAENHLEEIFDSADRPLEGRRWRLGAEDPFQCLAVCMNLTEALRSSSPET 666
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH+P+HQDGSCNGLQHYAALG++ L A AVNLVAGEKPADVY+ IA RV EIM+ D+
Sbjct: 667 TISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQ 726
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
KDPS P A A++++DQVDRKLVKQTVMTSVYGVT++GAREQI+RRL+E+G I +D +L
Sbjct: 727 KDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSEL 786
Query: 824 FAAACYAAKVS 834
F A+CYAAKV+
Sbjct: 787 FGASCYAAKVT 797
>gi|308026128|emb|CBL69149.1| RNA polymerase [Nuphar advena]
Length = 996
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/666 (64%), Positives = 533/666 (80%), Gaps = 12/666 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +RRQ+K ETEAWE+ EY+EL M +++LAPNLP++K LFLGWF PL + I
Sbjct: 160 KYKAQKRRQIKIETEAWEQAAREYRELFVDMCKQKLAPNLPYMKSLFLGWFEPLRDRIAA 219
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ+ R K +AAYA +I+ LPAD VAVI MHK+MGL+M +++ C +VVQAA IG AI
Sbjct: 220 EQESYRKGKSRAAYARYIDHLPADMVAVITMHKLMGLMMTSNDNGCARVVQAACQIGEAI 279
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
E E RIH FLEKTK A+ E E ++KEKE LRK+V SLIK +++ + K++K
Sbjct: 280 ENEARIHRFLEKTKKKPANANKAEAEPEAVTKEKEFLRKKVTSLIKKQKLRQVTKIVKGK 339
Query: 352 EETKPWGRDTQAKLGSRLVELLIE---TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
++++PWG + AK+G RL+ELL++ +A + + YS AFRH ++ H
Sbjct: 340 DDSEPWGTEGHAKVGCRLIELLMKPLISAPLDQTADGHLYSS-----AFRHSLRSPSNHQ 394
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
Q ++RYGV+ECDPLV +GLDR+A+HM+IPY+PMLVPP W GY+KG +LFLPSYVMRT
Sbjct: 395 -QNNSRRYGVIECDPLVRKGLDRTARHMVIPYMPMLVPPLGWTGYDKGAHLFLPSYVMRT 453
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
HG+R+Q+EA+KS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SGG++AGLVD
Sbjct: 454 HGARQQREAVKSAPRKQLQSVFEALDTLGSTKWRVNKRVLAVVDRIWASGGHLAGLVDCQ 513
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
DV +PEKP +ED ++KWKWS+R A+K N ER+SQRCD ELKL+VAR+MKDEEGFYYPH
Sbjct: 514 DVPLPEKPDTEDEAVLRKWKWSLRNARKENSERYSQRCDVELKLAVARKMKDEEGFYYPH 573
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
NLDFRGRAYPMHP+LNHL SD+CRGVLEFAEGRPLGKSGL WLKIH+ANL++GG++KLS+
Sbjct: 574 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLHWLKIHVANLYAGGIDKLSY 633
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
DGRLAFVENHL +IFDS++ P+ GSRWWL AEDPFQCLAACINLS+AL+SSSP + ISH+
Sbjct: 634 DGRLAFVENHLDDIFDSSDRPLEGSRWWLGAEDPFQCLAACINLSDALRSSSPETTISHV 693
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IM+RDS KDP+
Sbjct: 694 PIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAERVFDIMRRDSQKDPTN 753
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAAC 828
+P A A++LIDQVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD Q+F AAC
Sbjct: 754 NPSAARARLLIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERDAIPDD-QVFGAAC 812
Query: 829 YAAKVS 834
YAAK +
Sbjct: 813 YAAKTT 818
>gi|357123259|ref|XP_003563329.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
[Brachypodium distachyon]
Length = 943
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/658 (63%), Positives = 536/658 (81%), Gaps = 8/658 (1%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
+RQVK ETEAW R +EY++LE +M+++ LAP+LP++K LFLGWF PL +AI R+Q++QR
Sbjct: 113 QRQVKAETEAWARAAEEYRQLEREMLDRNLAPSLPYVKSLFLGWFEPLRDAIARDQEVQR 172
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQEI 297
K+ K YA ++ LLPA+KV+VIVMHKMMGL+M+ ++D C V+VVQAA IG A+E+E
Sbjct: 173 RKRVKHVYAKYLLLLPAEKVSVIVMHKMMGLLMS-NKDGCGSVRVVQAAHSIGEAVEREF 231
Query: 298 RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKP 356
++ +F +KT+ +K + + L KE+ RK V SL+K +++ EAQKL++ E E +
Sbjct: 232 KVQAFFQKTR---KKGKNGENDPALGKEQAKCRKLVKSLVKRRKLTEAQKLVQQEIELEE 288
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
WG + Q KLG+RL+ELL+++A+VQ P + S PD RPAF+H + + G + K++
Sbjct: 289 WGTEAQVKLGTRLIELLLDSAFVQSPADQIPDSSPDFRPAFKHVLRKPIVENG-RLKKKH 347
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE 476
V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q+E
Sbjct: 348 FVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQKE 407
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP 536
A+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ D+ +PE+P
Sbjct: 408 AIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKGDIPLPERP 467
Query: 537 LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
SED E+QKWKWS++KAKKIN+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRA
Sbjct: 468 ESEDPDEIQKWKWSLKKAKKINRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRA 527
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YPMHPHL+HL SD+CRGVLE+AEGRPLGKSGLRWLKIHLAN + GG+EKLSH +LAFVE
Sbjct: 528 YPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHGSKLAFVE 587
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
NHL +IFDSA NP++G+RWW+ AEDPFQCLAAC++LS ALKSSSPH+ ISHLPIHQDGSC
Sbjct: 588 NHLPDIFDSAANPVDGNRWWINAEDPFQCLAACVDLSNALKSSSPHTAISHLPIHQDGSC 647
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV ++++ DS KDP+ LAK
Sbjct: 648 NGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLDVVREDSMKDPATDASVSLAK 707
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+L+DQVDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITDD+ L+ +CYA +V+
Sbjct: 708 VLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDDKLLYEVSCYATRVT 765
>gi|224111836|ref|XP_002315996.1| predicted protein [Populus trichocarpa]
gi|222865036|gb|EEF02167.1| predicted protein [Populus trichocarpa]
Length = 852
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/672 (61%), Positives = 539/672 (80%), Gaps = 13/672 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +L+RRQVK ETEAWE+ EY+E+ M E++LAPNLP++K LFLGWF PL +AI
Sbjct: 5 KYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAILA 64
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC-VQVVQAAVHIGMA 292
EQ++ + + + + LPAD +AVI MHK+MGL+M G+ ++VVQAA +G A
Sbjct: 65 EQELCKVN-SRVPHRAYFNDLPADMMAVITMHKLMGLLMTGNGGTASIRVVQAASVVGEA 123
Query: 293 IEQEIRIHSFLEKTKNYKR-KKIIADTEEV--------LSKEKELLRKRVNSLIKSKRVM 343
IE E +IH FLEKTK K K+ I++ E V L+KE+E LRK+V +L+K ++V
Sbjct: 124 IENEAKIHKFLEKTKKRKNLKEKISEGESVAAIYEGEKLTKEQEKLRKKVTTLMKKQKVH 183
Query: 344 EAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ ++++K ++++ PWG++ K+GSRL++L+IETAY+Q P++ PPD+RPAF H K
Sbjct: 184 QVRRIVKGHDDSMPWGQEAHLKVGSRLIQLMIETAYIQPPIDQIGDGPPDIRPAFVHTLK 243
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
TI K QK+++RYGV+ECDPLV +GL++SA+HM+IPY+PMLVPP W GY++G Y FLP
Sbjct: 244 TITKDT-QKSSRRYGVIECDPLVRKGLEKSARHMVIPYMPMLVPPLNWTGYDQGAYFFLP 302
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
SYVMR HG+++Q+ A+K + N ++ VF+ALDTLG+TKWRVNK++L V++ IW SGG++A
Sbjct: 303 SYVMRIHGAKQQRVAIKRASRNQLEPVFKALDTLGNTKWRVNKRILGVIDRIWASGGHLA 362
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
GLVDR DV +PE+P +ED E++KW+W V+ KK N ERHSQRCD ELKL+VAR+MKDEE
Sbjct: 363 GLVDREDVPLPEEPQTEDEAEIRKWRWKVKSVKKENSERHSQRCDVELKLAVARKMKDEE 422
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
GFYYPHN+DFRGRAYPMHP+LNHL SDVCRG+LEFAEGRPLGKSGLRWLKIHLANL++GG
Sbjct: 423 GFYYPHNVDFRGRAYPMHPYLNHLGSDVCRGILEFAEGRPLGKSGLRWLKIHLANLYAGG 482
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
V+KLS+DGR++F ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEAL+S SP
Sbjct: 483 VDKLSYDGRISFTENHLDDIFDSADRPLEGQRWWLGAEDPFQCLAVCINLSEALRSPSPE 542
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ ISH P+HQDGSCNGLQHYAALGR+ L AAAVNLV G KPADVYS IA RV +IM+RD+
Sbjct: 543 TAISHTPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGGKPADVYSGIAARVLDIMRRDA 602
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
DP+ +P ++ AK+LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ +I DD Q
Sbjct: 603 ENDPAINPNSVHAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCNIADDPQ 662
Query: 823 LFAAACYAAKVS 834
L++AACYAAK +
Sbjct: 663 LYSAACYAAKTT 674
>gi|40255318|emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
Length = 862
Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/665 (62%), Positives = 538/665 (80%), Gaps = 7/665 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ LR+RQ++ ETEAWE+ EY+EL A M E +LAPNLP++K LFLGWF PL + I
Sbjct: 23 KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIA 82
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++AP+ +LPAD +AVI MHK+MGL+M G D V+V+QAA IG A+
Sbjct: 83 EQELVGERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAV 142
Query: 294 EQEIRIHSFLEKTKNYKR---KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E+RIH FLEKTK K++ + ++KE++LLRK+V L+K +++ + + L+K
Sbjct: 143 EHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQVRHLVK 202
Query: 351 NEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ T+PWG+D AK+GSRL+EL IETA++Q P + + S P++RPAF H +T+ +
Sbjct: 203 KQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVAR--- 259
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
++ ++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMRTH
Sbjct: 260 EQKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTH 319
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+R+Q+EA+K M+ +FEALD LGSTKWRVNK+VLS+++ IW SGG +A LVDR D
Sbjct: 320 GARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRAD 379
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PEKP +ED E++KW+WS+R AKK N ERHSQRCD ELKL+VAR+MK+E GFY+PHN
Sbjct: 380 VSLPEKPDTEDEAELKKWRWSMRSAKKENSERHSQRCDVELKLAVARKMKEEVGFYHPHN 439
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRGVLEF+EGRPLG+SGLRWLKIHLANL+ GGV+KLS+D
Sbjct: 440 LDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYD 499
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDSA P+ G RWWL AEDPFQCLA C++L+EAL+SSSP +VISH+P
Sbjct: 500 GRIAFTENHLEDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSSSPETVISHIP 559
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ L A AVNLV+GEKPADVYS IA RV EIMKRD+ KDP+K
Sbjct: 560 VHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKD 619
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
A A++L+DQVDR+LVKQTVMTSVYGVT+VGAREQIKRRL+E+G I DD +LF A+CY
Sbjct: 620 ADAARARLLVDQVDRRLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCY 679
Query: 830 AAKVS 834
AAKV+
Sbjct: 680 AAKVT 684
>gi|6958204|gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
Length = 1005
Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/665 (62%), Positives = 535/665 (80%), Gaps = 6/665 (0%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ LR+RQ++ ETEAWE+ EY+EL A M E +LAPNLP++K LFL WF PL + I
Sbjct: 165 KYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLRDQIIA 224
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++AP+ +LPAD +AVI MHK+MGL+M G D V+V+QAA IG A+
Sbjct: 225 EQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAV 284
Query: 294 EQEIRIHSFLEKTKNYKR---KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
E E+RIH FLEKTK K++ + ++KE+E LRK+V L+K +++ + + L+K
Sbjct: 285 EHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAKEQERLRKKVTDLMKKQKIRQVRHLVK 344
Query: 351 NEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ T+PWG+D AK+GSRL+EL IETA++Q P + + S P++RPAF H +T+ +
Sbjct: 345 KQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVARE-- 402
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
Q+ ++RYGV++CDPLV +GLDR+AKHM+IPY+PML+PP W GY+KG +LFLPSYVMRTH
Sbjct: 403 QRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTH 462
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+R+Q+EA+K M+ +FEALD LGSTKWRVNK+VLS+++ IW SGG +A LVDR D
Sbjct: 463 GARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADLVDRAD 522
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V +PEKP +ED E++KW+WS+R A+K N ERHSQRCD ELKL+VAR+MK+E GFYYPHN
Sbjct: 523 VSLPEKPDTEDEAELKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMKEEAGFYYPHN 582
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRGVLEF+EGRPLG+SGLRWLKIHLANL+ GGV+KLS+D
Sbjct: 583 LDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYD 642
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+AF ENHL +IFDSA P+ G RWWL AEDPFQCLA C++L+EAL+S SP +VISH+P
Sbjct: 643 GRIAFTENHLDDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSPSPETVISHIP 702
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ L A AVNLV+GEKPADVYS IA RV EIMKRD+ KDP+K
Sbjct: 703 VHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKD 762
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
A A++L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+G I DD +LF A+CY
Sbjct: 763 ADAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCY 822
Query: 830 AAKVS 834
AAKV+
Sbjct: 823 AAKVT 827
>gi|30698496|dbj|BAC76605.1| RpoT2 [Oryza sativa Japonica Group]
gi|37360971|dbj|BAC98394.1| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa
Japonica Group]
Length = 953
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/666 (61%), Positives = 540/666 (81%), Gaps = 7/666 (1%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+K + LR+RQVK ETEAW R DEY+ELE +M+++RLAP LP++K LFLGWF PL +A
Sbjct: 115 RKAEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDA 174
Query: 231 IEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHI 289
I R+Q++QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA I
Sbjct: 175 IARDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCI 234
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+E+E ++ +F +KT RKK + + L KE+ RKRV SL++ +++ EAQK++
Sbjct: 235 GEAVEREFKVQTFFQKT----RKKSAGENDLALEKEQAKCRKRVKSLVRRRKLTEAQKIV 290
Query: 350 KNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
+ E E + WG ++Q KLG+RL+ELL+++A+VQ P + S PD+RPAF+H + +
Sbjct: 291 QQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLRQPIVEN 350
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
G + K++ V+ECDPLV EG + +A+H+ IPY+PMLV PKKWKGY+ GGYLFLPSY+MRT
Sbjct: 351 G-RLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYLFLPSYIMRT 409
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
HG + Q+EA+KSV ++KVFEALDTLGSTKWRVN++V + +E+IW GG IAGLVD+
Sbjct: 410 HGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNAVETIWSRGGGIAGLVDKE 469
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
++ +PE+P +ED E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPH
Sbjct: 470 NIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAERCDTELKLSVARKMREEDGFYYPH 529
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
NLDFRGRAYPMH HL+HL SD+CRGVLE+AEGRPLGKSGLRWLKIHLAN + GG+EKLSH
Sbjct: 530 NLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSH 589
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ ++AFVEN L +IFDSA NP++G+ WW+ AEDPFQCLAAC++LS+ALKSSSP +SHL
Sbjct: 590 EDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDALKSSSPQCAVSHL 649
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYAALGR+ + AAAVNLV G+KPAD+YSEIA RV ++++ DS +DP+
Sbjct: 650 PIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEIAARVLDVVREDSMEDPAT 709
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAAC 828
+P A LA++L+DQVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +C
Sbjct: 710 NPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYEVSC 769
Query: 829 YAAKVS 834
YA +V+
Sbjct: 770 YATRVT 775
>gi|5292165|gb|AAB01085.2| single-subunit RNA polymerase C [Triticum aestivum]
Length = 949
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/660 (61%), Positives = 532/660 (80%), Gaps = 5/660 (0%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY++LE +M+++ LAP LP++K LFLGWF PL +A+ R+Q +
Sbjct: 114 LRQRQVKAETEAWARAAEEYRQLEGEMLDRHLAPQLPYVKSLFLGWFEPLRDAVARDQDV 173
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQ 295
QR K+ K YA ++ LLPA+KVAVIVMHKMMGL+M+ +D C V+VVQAA IG A+E+
Sbjct: 174 QRRKRVKHVYAKYLLLLPAEKVAVIVMHKMMGLLMSS-KDGCGSVRVVQAAHSIGEAVER 232
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ET 354
E ++ +F +KT+ R K ++ + L KE+ RK V SL++ ++ EAQKL++ E E
Sbjct: 233 EYKVQAFFQKTRRKTRSKTESENDPGLDKEQAKCRKLVKSLVRRRKSTEAQKLVQQEIEL 292
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ WG + Q KLG+RL+ELL+++A+VQ P + S PD RPAF+H + + G + K
Sbjct: 293 EEWGTEAQVKLGTRLIELLLDSAFVQSPADQTPDSSPDFRPAFKHVLRKPIVENG-RLKK 351
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
++ V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q
Sbjct: 352 KHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQ 411
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ ++ +PE
Sbjct: 412 KEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKGNIPLPE 471
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+P +ED E+QKWKWSV+K KK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRG
Sbjct: 472 QPETEDPDEIQKWKWSVKKTKKANRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRG 531
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMHPHL+HL SD+CRGVLE+AEGRPLGKSGLRWLKIHLAN + GG+EKLSH+ +L F
Sbjct: 532 RAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGGGIEKLSHESKLTF 591
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
VE+HL +IFDSA NP++G+ WW+ AEDPFQCLAAC++LS AL+SSSPH +SHLPIHQDG
Sbjct: 592 VEDHLPDIFDSAANPVDGNCWWINAEDPFQCLAACMDLSNALESSSPHGAVSHLPIHQDG 651
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV ++++ DS KDP+ P L
Sbjct: 652 SCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLDVVREDSMKDPATDPSVPL 711
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
AK+L+D+VDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITDD+ L+ +CYA +V+
Sbjct: 712 AKVLVDEVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDDKLLYDVSCYATRVT 771
>gi|449482235|ref|XP_004156222.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 958
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/676 (62%), Positives = 533/676 (78%), Gaps = 5/676 (0%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLG 222
+L+ + M + K+N+LRRRQV E EAWE EY+EL M +++LAPNLP++K LFLG
Sbjct: 132 RLKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEYRELLVDMCKQKLAPNLPYVKSLFLG 191
Query: 223 WFGPLSEAIEREQKM-QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQ 281
WF P +AI +EQ++ Q K+ +A YAP+ LPADK++VI MHK+MGL+M G E V+
Sbjct: 192 WFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPADKMSVITMHKLMGLLMRGSEHGSVR 251
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS--KEKELLRKRVNSLIKS 339
VVQAA IG AIEQE+RIH FLEK K K + ++ S KE+E LRK+ + L
Sbjct: 252 VVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDNENNDQPDSERKEQERLRKKXDQLDXK 311
Query: 340 KRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
K+ + A ++ K ++++PWGR+ +AK+G+RL+ELLI+TAY+Q P + PPD RPAF
Sbjct: 312 KKHLAAGQIAKRADDSRPWGRELKAKVGARLIELLIQTAYIQPPADQLADGPPDPRPAFV 371
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H KT +K G R GV+ECDPLV++GLD +A+ ++IPY+PML+PP KW+GY+KGG+
Sbjct: 372 HSLKTSVKD-GTNFMGRLGVIECDPLVVKGLDWTARQIVIPYMPMLMPPVKWRGYDKGGH 430
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ LPS+ MRTHG+++Q++A K + VFEALDTLG+TKWR+NK++L+V+E IW SG
Sbjct: 431 ILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALDTLGNTKWRINKRILNVVERIWTSG 490
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G++AGLVD++DV +PEKP +ED T ++KWKW VR KK N ERHSQRCD ELKL+VAR+M
Sbjct: 491 GHLAGLVDQDDVPLPEKPDTEDETLIKKWKWEVRSVKKENMERHSQRCDIELKLTVARKM 550
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEEGFYYPHN+DFRGRAYPMHPHLNHL SD+CRG+LEFAEGR L KSGL WLKIHLANL
Sbjct: 551 KDEEGFYYPHNVDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLRKSGLIWLKIHLANL 610
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F+GGV+KLSHDGR+ F+ENHL +IFDSA+ P+ G RWW+ AEDPFQ LA C+NL+EAL+S
Sbjct: 611 FAGGVDKLSHDGRMTFIENHLEDIFDSADRPLEGGRWWMNAEDPFQFLAGCMNLTEALRS 670
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SSP + ISH+PIHQDGSCNGLQHYAALGR+ AAAVNLVAGEKPADVYS IA RV EI+
Sbjct: 671 SSPETYISHIPIHQDGSCNGLQHYAALGRDKSGAAAVNLVAGEKPADVYSGIAARVLEIL 730
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
KRD+ KDP P AL AKILIDQVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I+
Sbjct: 731 KRDAQKDPETFPDALHAKILIDQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERAAIS 790
Query: 819 DDRQLFAAACYAAKVS 834
DD +LF +CYAAK++
Sbjct: 791 DDSELFGCSCYAAKIT 806
>gi|15823750|dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/669 (62%), Positives = 533/669 (79%), Gaps = 9/669 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + A AP + LPA+ +AVI MHK+MG +M G +VVQAA HI
Sbjct: 221 AIAAEQKLCDEGKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+K
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDK 635
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS++GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S++PIHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFA 815
Query: 826 AACYAAKVS 834
AACYAAK +
Sbjct: 816 AACYAAKTT 824
>gi|297738211|emb|CBI27412.3| unnamed protein product [Vitis vinifera]
Length = 810
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/633 (63%), Positives = 513/633 (81%), Gaps = 3/633 (0%)
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M E++LAPNLP+IK LFLGWF PL + I EQ + + K +AAYAP+ + LPAD +AVI
Sbjct: 1 MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT-EEVL 322
MHK+MGL+M G + +VVQAA HIG AIE E+RI F+EKTK D +
Sbjct: 61 MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPV 120
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
+KE+E LRK+V+ L+K +++ + ++++K +++KPWG+D K+GSRL+ELLIETAY+Q
Sbjct: 121 TKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQP 180
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYV 441
P + PPD+RPAF H KT++K QK T+RYGV+ECDPLV +GL+++A+HM+IPY+
Sbjct: 181 PADQLGDGPPDIRPAFVHTLKTVIKET-QKGTRRYGVIECDPLVRKGLEKTARHMVIPYM 239
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PMLVPP W GY+KG YLFLPSYVMR HG+R+Q+EA+K ++ FEAL+TLG+TKW
Sbjct: 240 PMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKW 299
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
R+NK+VL V++ IW SGG +A LVDR DV +PE+P +ED E++KWKW VR KK N ER
Sbjct: 300 RINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSER 359
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRCD ELKL+VAR+MKDE+GF+YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGR
Sbjct: 360 HSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGR 419
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLGKSGLRWLKIHLAN+++GGV+KLS++GR+AF ENHL +IFDSA+ P+ G RWWL+AED
Sbjct: 420 PLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAED 479
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQCLA CINLSEAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGE
Sbjct: 480 PFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGE 539
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
KPADVYS IA RV +IM+RD+ KDP+ P AL A++LI QVDRKLVKQTVMTSVYGVT++
Sbjct: 540 KPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYI 599
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
GAR+QIKRRL+E+ I D+ ++F+A+CYAAK +
Sbjct: 600 GARDQIKRRLKERCAIADEGEVFSASCYAAKTT 632
>gi|34481851|emb|CAD45446.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/660 (61%), Positives = 532/660 (80%), Gaps = 5/660 (0%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY++LE +M+++ LAP LP++K LFLGWF PL +A+ R+Q +
Sbjct: 113 LRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVARDQDV 172
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQ 295
QR K+ K YA ++ LLP +KVAVIVMHKMMGL+M+ +D C V+VVQAA IG A+E+
Sbjct: 173 QRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSS-KDGCGSVRVVQAAHSIGEAVER 231
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ET 354
E ++ +F +KT+ R K ++ + L KE+ RK V SL++ +++ EAQKL++ E E
Sbjct: 232 EYKVQAFFQKTRRKTRSKNESENDPALDKEQAKCRKLVKSLVRRRKLTEAQKLVQQEIEL 291
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ WG + Q KLG+RL+ELL+++A+VQ P N + PD RPAF+H + + G + K
Sbjct: 292 EEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLRKPIVENG-RLKK 350
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
++ V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q
Sbjct: 351 KHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQ 410
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ ++ +PE
Sbjct: 411 KEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKENIPLPE 470
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+P +ED E+QKW+WSV+K KK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRG
Sbjct: 471 RPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRG 530
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMHPHL+HL SD+CRGVLE+ EGRPLGKSGLRWLKIHLAN + GG+EKL+H+ +LAF
Sbjct: 531 RAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIHLANKYGGGIEKLTHESKLAF 590
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
VE+ L IFDSA NP++G+ WW+ AEDPFQCLAACI+LS+ALKSSSPH+ +SHLPIHQDG
Sbjct: 591 VEDRLPAIFDSAANPVDGNCWWINAEDPFQCLAACIDLSDALKSSSPHAAVSHLPIHQDG 650
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV +++ DS KDP+ P L
Sbjct: 651 SCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLNVVREDSMKDPATDPSVPL 710
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
A++L+DQVDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITD++ L+ +CYAA+V+
Sbjct: 711 ARVLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDEKLLYDVSCYAARVT 770
>gi|34481849|emb|CAD45445.1| DNA-directed RNA polymerase, chloroplast precursor [Hordeum vulgare
subsp. vulgare]
Length = 948
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/660 (61%), Positives = 531/660 (80%), Gaps = 5/660 (0%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY++LE +M+++ LAP LP++K LFLGWF PL +A+ R+Q +
Sbjct: 113 LRQRQVKAETEAWARAAEEYRQLEREMLDRNLAPQLPYVKSLFLGWFEPLRDAVARDQDV 172
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--VQVVQAAVHIGMAIEQ 295
QR K+ K YA ++ LLP +KVAVIVMHKMMGL+M+ +D C V+VVQAA IG A+E+
Sbjct: 173 QRRKRVKHVYAKYLLLLPPEKVAVIVMHKMMGLLMSS-KDGCGSVRVVQAAHSIGEAVER 231
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ET 354
E ++ +F +KT+ R K ++ + L KE+ RK V SL++ +++ EAQKL++ E E
Sbjct: 232 EYKVQAFFQKTRRKTRSKNESENDPALDKEQAKCRKLVKSLVRRRKLTEAQKLVQQEIEL 291
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ WG + Q KLG+RL+ELL+++A+VQ P N + PD RPAF+H + + G + K
Sbjct: 292 EEWGAEAQVKLGTRLIELLLDSAFVQSPANQTPDNSPDFRPAFKHVLRKPIVENG-RLKK 350
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
++ V+ECDPLV EG + +A+H+ IPY+PMLVPP KWKGY+KGG+LFLPSYVMRTHG + Q
Sbjct: 351 KHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLPSYVMRTHGVKDQ 410
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+KSV ++KVFEALD LG TKWRVN++V V+E+IW GG IAGLVD+ ++ +PE
Sbjct: 411 KEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIAGLVDKENIPLPE 470
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+P +ED E+QKW+WSV+K KK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRG
Sbjct: 471 RPETEDPDEIQKWRWSVKKTKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRG 530
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMHPHL+HL SD+CRGVLE+ EGRPLGKSGLRWLKIHLAN + GG+EKL+H+ +LAF
Sbjct: 531 RAYPMHPHLSHLGSDLCRGVLEYGEGRPLGKSGLRWLKIHLANKYGGGIEKLTHESKLAF 590
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
VE+ L IFDSA NP++G+ WW+ AED FQCLAACI+LS+ALKSSSPH+ +SHLPIHQDG
Sbjct: 591 VEDRLPAIFDSAANPVDGNCWWINAEDSFQCLAACIDLSDALKSSSPHAAVSHLPIHQDG 650
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ + AAAVNLV GEKPAD+YSEIA RV +++ DS KDP+ P L
Sbjct: 651 SCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLNVVREDSMKDPATDPSVPL 710
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
A++L+DQVDRKLVKQTVMTSVYGVTF+GAR+QI +RL+EKGHITD++ L+ +CYAA+V+
Sbjct: 711 ARVLVDQVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQEKGHITDEKLLYDVSCYAARVT 770
>gi|21425663|emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/669 (62%), Positives = 535/669 (79%), Gaps = 9/669 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HI
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D E+ + KE+E LRK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+K
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDK 635
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS++GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S++PIHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFA 815
Query: 826 AACYAAKVS 834
AACYAAK +
Sbjct: 816 AACYAAKTT 824
>gi|34925359|sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial;
AltName: Full=NsRpoT-A; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1;
Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/669 (62%), Positives = 535/669 (79%), Gaps = 9/669 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HI
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+K
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDK 635
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS++GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S++PIHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFA 815
Query: 826 AACYAAKVS 834
AACYAAK +
Sbjct: 816 AACYAAKTT 824
>gi|125556302|gb|EAZ01908.1| hypothetical protein OsI_23934 [Oryza sativa Indica Group]
Length = 950
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/691 (59%), Positives = 540/691 (78%), Gaps = 32/691 (4%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+K + LR+RQVK ETEAW R DEY+ELE +M+++RLAP LP++K LFLGWF PL +A
Sbjct: 87 RKAEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDA 146
Query: 231 IEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHI 289
I R+Q++QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA I
Sbjct: 147 IARDQEVQRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCI 206
Query: 290 GMAIEQE-------------------------IRIHSFLEKTKNYKRKKIIADTEEVLSK 324
G A+E+E ++ +F +KT RKK + + L K
Sbjct: 207 GEAVERENRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKT----RKKSAGENDLALEK 262
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPV 383
E+ RKRV SL++ +++ EAQK+++ E E + WG ++Q KLG+RL+ELL+++A+VQ P
Sbjct: 263 EQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPA 322
Query: 384 NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPM 443
+ S PD+RPAF+H + + G + K++ V+ECDPLV EG + +A+H+ IPY+PM
Sbjct: 323 DQTPESSPDIRPAFKHVLRQPIVENG-RLKKKHWVIECDPLVHEGFESTARHVEIPYLPM 381
Query: 444 LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRV 503
LV PKKWKGY+ GGYLFLPSY+MRTHG + Q+EA+KSV ++KVFEALDTLGSTKWRV
Sbjct: 382 LVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRV 441
Query: 504 NKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
N++V + +E+IW GG IAGLVD+ ++ +PE+P +ED E+QKWKWS++KAKK N+E H+
Sbjct: 442 NRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHA 501
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
+RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH HL+HL SD+CRGVLE+AEGRPL
Sbjct: 502 ERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPL 561
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGLRWLKIHLAN + GG+EKLSH+ ++AFVEN L +IFDSA NP++G+ WW+ AEDPF
Sbjct: 562 GKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPF 621
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLAAC++LS+ALKSSSP +SHLPIHQDGSCNGLQHYAALGR+ + AAAVNLV G+KP
Sbjct: 622 QCLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKP 681
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
AD+YSEIA RV ++++ DS +DP+ +P A LA++L+DQVDRKLVKQTVMTSVYGVT++GA
Sbjct: 682 ADIYSEIAARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGA 741
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
R+QI +RL+EKG ITDD+ L+ +CYA +V+
Sbjct: 742 RQQITKRLQEKGLITDDKLLYEVSCYATRVT 772
>gi|88933965|sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial;
AltName: Full=NictaRpoT1-tom; AltName: Full=T7
bacteriophage-type single subunit RNA polymerase 1B;
Flags: Precursor
Length = 1002
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/669 (62%), Positives = 532/669 (79%), Gaps = 9/669 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+N LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA +I
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+K
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDK 635
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS++GR+AF ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S++PIHQDGSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFA 815
Query: 826 AACYAAKVS 834
AACYAAK +
Sbjct: 816 AACYAAKTT 824
>gi|21425637|emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
Length = 1002
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/669 (62%), Positives = 531/669 (79%), Gaps = 9/669 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+N LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA +I
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL ++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+K
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDK 635
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS++GR+AF ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S++PIHQDGSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFA 815
Query: 826 AACYAAKVS 834
AACYAAK +
Sbjct: 816 AACYAAKTT 824
>gi|222636003|gb|EEE66135.1| hypothetical protein OsJ_22187 [Oryza sativa Japonica Group]
Length = 946
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/684 (59%), Positives = 537/684 (78%), Gaps = 32/684 (4%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R DEY+ELE +M+++RLAP LP++K LFLGWF PL +AI R+Q++
Sbjct: 90 LRQRQVKAETEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEV 149
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQE 296
QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E
Sbjct: 150 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGVASVRVVQAAHCIGEAVERE 209
Query: 297 -------------------------IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRK 331
++ +F +KT RKK + + L KE+ RK
Sbjct: 210 NRLNNVEALDSLALYTTDRCVRSWNFKVQTFFQKT----RKKSAGENDLALEKEQAKCRK 265
Query: 332 RVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP 390
RV SL++ +++ EAQK+++ E E + WG ++Q KLG+RL+ELL+++A+VQ P + S
Sbjct: 266 RVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQSPADQTPESS 325
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKW 450
PD+RPAF+H + + G + K++ V+ECDPLV EG + +A+H+ IPY+PMLV PKKW
Sbjct: 326 PDIRPAFKHVLRQPIVENG-RLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKW 384
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
KGY+ GGYLFLPSY+MRTHG + Q+EA+KSV ++KVFEALDTLGSTKWRVN++V +
Sbjct: 385 KGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNA 444
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
+E+IW GG IAGLVD+ ++ +PE+P +ED E+QKWKWS++KAKK N+E H++RCDTEL
Sbjct: 445 VETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAERCDTEL 504
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLSVAR+M++E+GFYYPHNLDFRGRAYPMH HL+HL SD+CRGVLE+AEGRPLGKSGLRW
Sbjct: 505 KLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRW 564
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHLAN + GG+EKLSH+ ++AFVEN L +IFDSA NP++G+ WW+ AEDPFQCLAAC+
Sbjct: 565 LKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACM 624
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+LS+ALKSSSP +SHLPIHQDGSCNGLQHYAALGR+ + AAAVNLV G+KPAD+YSEI
Sbjct: 625 DLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEI 684
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A RV ++++ DS +DP+ +P A LA++L+DQVDRKLVKQTVMTSVYGVT++GAR+QI +R
Sbjct: 685 AARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKR 744
Query: 811 LEEKGHITDDRQLFAAACYAAKVS 834
L+EKG ITDD+ L+ +CYA +V+
Sbjct: 745 LQEKGLITDDKLLYEVSCYATRVT 768
>gi|356523672|ref|XP_003530460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 1015
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/668 (63%), Positives = 531/668 (79%), Gaps = 8/668 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
++ LRRRQVK ETE WE EY+EL M E +LAPNLP++K LFLGWF PL +AI +
Sbjct: 171 RYQELRRRQVKIETETWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVK 230
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV---QVVQAAVHIG 290
EQ+M K + AY P+ LPADK+AVI MHK+MGL+M G E V +VVQAA IG
Sbjct: 231 EQEMYGEGKNRTAYVPYFVQLPADKMAVIAMHKLMGLLMTGTEHATVGTARVVQAACGIG 290
Query: 291 MAIEQEIRIHSFLEKTKNYKRKKIIAD--TEEVLS-KEKELLRKRVNSLIKSKRVMEAQK 347
AIE E+RIH FLEKTK K + + +E V KE++ LRK+V L+K ++++ +
Sbjct: 291 DAIENEVRIHKFLEKTKKKKGDRSKKNKASESVADIKEEQKLRKKVIDLMKKQKLVAVRG 350
Query: 348 LLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
L+K ++TKPWG + K+GSRL+ELL++TAY+Q P + + PD+RPAF H F+T+ K
Sbjct: 351 LVKGKDDTKPWGAAIKTKVGSRLIELLMQTAYIQPPPDQLLDAAPDIRPAFVHSFRTVAK 410
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
K +KRYG+V+CDPL+L+GL+R+AK+M+IPY+PMLVPP W GY+KGG+LFLPSYVM
Sbjct: 411 -VSAKASKRYGIVQCDPLILKGLERTAKNMVIPYMPMLVPPVNWSGYDKGGHLFLPSYVM 469
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K ++ VFEALDTLG TKWRVNK+VLSV++ IW SGG IA LVD
Sbjct: 470 RTHGARQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRIADLVD 529
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+DV +P+KP+++D +++KWKW + +K N+ER+SQRCD ELKL+VAR+MKDEEGFYY
Sbjct: 530 RDDVPLPDKPVTDDEEKIKKWKWKCKSLQKENRERYSQRCDIELKLAVARKMKDEEGFYY 589
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGR LGKSGL+WLKIHLANL++GGV+KL
Sbjct: 590 PHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRFLGKSGLQWLKIHLANLYAGGVDKL 649
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
SH+GRL F ENH +IFDSA+ P+ G RWWL AEDP QCLA CI L+EAL+SSSP + IS
Sbjct: 650 SHEGRLVFTENHFEDIFDSADKPLQGRRWWLKAEDPLQCLAVCITLTEALRSSSPETFIS 709
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV IM+RD+ KDP
Sbjct: 710 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVSNIMQRDAQKDP 769
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
+ P AL A+ L++QVDRKLVKQTVMTSVYGVT++GAREQIKRRL+E+ I+DD +LF A
Sbjct: 770 AIFPDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNAISDDTELFGA 829
Query: 827 ACYAAKVS 834
+CYAAKV+
Sbjct: 830 SCYAAKVT 837
>gi|3341648|emb|CAA06488.1| DNA directed RNA polymerase [Zea mays]
gi|413954906|gb|AFW87555.1| DNA-directed RNA polymerase isoform 1 [Zea mays]
gi|413954907|gb|AFW87556.1| DNA-directed RNA polymerase isoform 2 [Zea mays]
Length = 952
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/654 (61%), Positives = 529/654 (80%), Gaps = 6/654 (0%)
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKK 242
VK ETEAW R +EY+E+E +M+++RLAP LP++K LF+GWF PL +AI R+Q +QR K+
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRIHS 301
K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E ++ S
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRD 360
F +K++ +KKI + + L KE+ RKRV SL+K +++ EAQ+L++ E E + WG +
Sbjct: 245 FFQKSR---KKKIQGENDPALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEEWGTE 301
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
Q KLGSRL+ELL+++A+VQ P + S PD+RPAF+H + + G + K++ V+E
Sbjct: 302 AQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENG-RLKKKHWVIE 360
Query: 421 CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
CD LV EG + +A+H+ IPY+PMLVPPKKWKGY+KGG+LFLPSY+MRTHG + Q++A+ S
Sbjct: 361 CDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINS 420
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
V ++KVFEALD LGSTKWRVN++V V+E+IW GG IAGLVD+ ++ +PE+P SED
Sbjct: 421 VPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLPERPESED 480
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH
Sbjct: 481 PDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 540
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
PHL+HL SD+CRGVLE+AEGRPLGKSGL WLKIHLAN + GG+EKLSH+G+LAFVEN L+
Sbjct: 541 PHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLAFVENQLF 600
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
+IFDSA NP++G+ WW AEDPFQCLAAC++LS+AL+S SP+ +SHLPIHQDGSCNGLQ
Sbjct: 601 DIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIHQDGSCNGLQ 660
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID 780
HYAALGR+ + A AVNLV GEKPAD+YSEIA RV ++ DS KDP+ +P A LA++L+D
Sbjct: 661 HYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNVVCEDSMKDPATNPTASLARVLVD 720
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
QVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +CYA +V+
Sbjct: 721 QVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYDVSCYATRVT 774
>gi|162457867|ref|NP_001104932.1| RNA polymerase2 [Zea mays]
gi|4559306|gb|AAD22977.1|AF127022_1 T7-like RNA polymerase [Zea mays]
Length = 952
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/654 (61%), Positives = 528/654 (80%), Gaps = 6/654 (0%)
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKK 242
VK ETEAW R +EY+E+E +M+++RLAP LP++K LF+GWF PL +AI R+Q +QR K+
Sbjct: 125 VKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRRKR 184
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRIHS 301
K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E ++ S
Sbjct: 185 VKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVEREFKVQS 244
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRD 360
F +K++ +KKI + + L KE+ RKRV SL+K +++ EAQ+L++ E E + WG +
Sbjct: 245 FFQKSR---KKKIQGENDPALEKEQAKCRKRVKSLVKRRKMSEAQRLVQQELELEEWGTE 301
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
Q KLGSRL+ELL+++A+VQ P + S PD+RPAF+H + + G + K++ V+E
Sbjct: 302 AQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENG-RLKKKHWVIE 360
Query: 421 CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
CD LV EG + +A+H+ IPY+PMLVPPKKWKGY+KGG+LFLPSY+MRTHG + Q++A+ S
Sbjct: 361 CDHLVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLPSYIMRTHGVKDQKDAINS 420
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
V ++KVFEALD LGSTKWRVN++V V+E+IW GG IAGLVD+ ++ +PE+P SED
Sbjct: 421 VPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIAGLVDKANIPLPERPESED 480
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH
Sbjct: 481 PDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMH 540
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
PHL+HL SD+CRGVLE+AEGRPLGKSGL WLKIHLAN + GG+EKLSH+G+LAFVEN L+
Sbjct: 541 PHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGIEKLSHEGKLAFVENQLF 600
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
+IFDSA NP++G+ WW AEDPFQCLAAC++LS+AL+S SP+ +SHLPIHQDGSCNGLQ
Sbjct: 601 DIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSPYHAVSHLPIHQDGSCNGLQ 660
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID 780
HYAALGR+ + A AVNLV GEKPAD+YSEIA RV ++ DS KDP+ +P A LA+ L+D
Sbjct: 661 HYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNVVCEDSMKDPATNPTASLARALVD 720
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
QVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +CYA +V+
Sbjct: 721 QVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYDVSCYATRVT 774
>gi|15221580|ref|NP_177063.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|3914832|sp|P92969.1|RPOT1_ARATH RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; Flags:
Precursor
gi|12323220|gb|AAG51592.1|AC011665_13 DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|1742971|emb|CAA70583.1| mitochondrial singel subunit DNA-directed RNA polymerase
[Arabidopsis thaliana]
gi|2330566|emb|CAA70210.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
gi|332196752|gb|AEE34873.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 976
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/673 (59%), Positives = 523/673 (77%), Gaps = 9/673 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G + FL
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 425
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ IW +GG I
Sbjct: 426 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 485
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV IPE+P ED + + W+W +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 486 GGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 545
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 546 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 605
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 606 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 665
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 666 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 725
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD
Sbjct: 726 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 785
Query: 822 QLFAAACYAAKVS 834
F A+CYAAK++
Sbjct: 786 LTFHASCYAAKIT 798
>gi|356567146|ref|XP_003551782.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Glycine max]
Length = 992
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/673 (61%), Positives = 529/673 (78%), Gaps = 18/673 (2%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
++ LRRRQVK ETE WE EY+EL M E +LAPNLP++K LFLGWF PL +AI +
Sbjct: 148 RYQELRRRQVKIETEMWEEAAKEYRELLMDMCEHKLAPNLPYMKSLFLGWFEPLRDAIVK 207
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV---QVVQAAVHIG 290
EQ+M K + AYAP+ LPADK+AVI MHK+MGL+M G+E + +VVQAA IG
Sbjct: 208 EQEMYSEGKNRMAYAPYFVQLPADKMAVIAMHKLMGLLMTGNERVTIGTARVVQAACGIG 267
Query: 291 MAIEQEIRIHSFLE--------KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
AIE E+RIH FLE ++ K + +AD KE++ LRK+V L+K +++
Sbjct: 268 DAIENEVRIHKFLEKTKKKKGDRSNKNKAGESVADI-----KEEQKLRKKVIDLMKKQKL 322
Query: 343 MEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+K ++TKPWG + K+GSRL+ELL++TAY+Q P + + PD+RPAF H F
Sbjct: 323 VAVRGLVKGKDDTKPWGAVIKTKVGSRLIELLLQTAYIQPPSDQLPDAAPDIRPAFVHSF 382
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
KT+ K K ++RYG+++CDPL+L+GL+R+AK+M+IPY+PMLVPP W GY+KGG+LFL
Sbjct: 383 KTVTKE-SIKASRRYGIIQCDPLILKGLERTAKNMVIPYMPMLVPPVNWTGYDKGGHLFL 441
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG R+Q+EA+K ++ VFEALDTLG TKWRVNK+VLSV++ IW SGG I
Sbjct: 442 PSYVMRTHGVRQQREAVKRAPRKQLEPVFEALDTLGHTKWRVNKKVLSVVDRIWASGGRI 501
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
A LVDR+DV +P++P ++D +++KWKW + +K N+ER+SQRCD ELKL+VAR+MKDE
Sbjct: 502 ADLVDRDDVPLPDEPDTDDEAKIKKWKWKYKSLQKENRERYSQRCDIELKLAVARKMKDE 561
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGR LGKSGLRWLKIHLANL++G
Sbjct: 562 EGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAG 621
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KLS++GRLAF ENH +IFDSA+ P+ G RWWL AEDP QCLA CI L+EAL+SSSP
Sbjct: 622 GVDKLSYEGRLAFTENHFEDIFDSADKPLEGRRWWLKAEDPLQCLAVCITLTEALRSSSP 681
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLV GEKPADVYS IA RV IM+RD
Sbjct: 682 ETFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVTGEKPADVYSGIAARVSNIMQRD 741
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ KDP+ AL A+ L++QVDRKLVKQTVMTSVYGVT++GAREQIKRRL+E+ I+DD+
Sbjct: 742 AQKDPAVFRDALHARTLVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERNAISDDK 801
Query: 822 QLFAAACYAAKVS 834
+LF A+CYAAKV+
Sbjct: 802 ELFGASCYAAKVT 814
>gi|449435282|ref|XP_004135424.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 968
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/663 (60%), Positives = 518/663 (78%), Gaps = 12/663 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+++LR+RQ+K ETEAWE EY++L A + E++LAPNLP++K LFLGWF PL +AI
Sbjct: 143 KYDMLRKRQIKIETEAWEEAAKEYQDLIADICEQKLAPNLPYMKSLFLGWFQPLRDAIVA 202
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMA 292
EQ+ + K+ ++A + LLPAD +AVI MHK+MGL+M+ E V+V QAA IG A
Sbjct: 203 EQESVKFKRSSPSHALYFHLLPADMMAVITMHKLMGLLMSDIEGGGSVRVTQAASGIGEA 262
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
IE E+RI +F EKTK E L++ + LRK++ L+K +++ + ++KN
Sbjct: 263 IENEVRIRNFFEKTKK---------QPEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNH 313
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+++KPWG D K+G RL++LLIETAY+Q PV+ +PPD+RPAF H KT LK Q+
Sbjct: 314 DDSKPWGTDAHVKVGCRLIQLLIETAYIQPPVDQIGDAPPDLRPAFVHSLKTSLKE-SQR 372
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
KRYGV+ECDPLV G+ ++A HM+IPY+PMLVPP+KW GY++G + FLPSYVMR G+
Sbjct: 373 LGKRYGVIECDPLVYRGMVKTAGHMIIPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGA 432
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
R+Q+EA+K + + VF+ALD LGSTKWRVNK+VLSV+E IW SGG +A LVDR D+
Sbjct: 433 RQQREAVKRASKKQLGPVFKALDILGSTKWRVNKRVLSVIEKIWASGGRLADLVDREDMP 492
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+PE+P+ ED E++ WKW V+ K+ N ERHSQRCDTELKL+VAR+MK+EEGFYYPHNLD
Sbjct: 493 LPEQPMVEDEAEIRNWKWKVKAVKRENSERHSQRCDTELKLAVARKMKEEEGFYYPHNLD 552
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYPMHPHLNH+ SD CRG LEFAEGRPLG+SGLRWLKIHLANL++GGV+KLS+ R
Sbjct: 553 FRGRAYPMHPHLNHIGSDFCRGTLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDR 612
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
++F ENHL EIFDSA+ P+ GSRWWL AEDPFQCLA CI+LSEAL+S SP + ISH+P+H
Sbjct: 613 ISFTENHLDEIFDSADRPLEGSRWWLGAEDPFQCLAVCIDLSEALRSPSPETTISHMPVH 672
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ L A AVNL AG+KPADVYS IA RV +IM+ D+ KDP+ +P
Sbjct: 673 QDGSCNGLQHYAALGRDKLGAEAVNLAAGDKPADVYSGIASRVLDIMRSDAAKDPASNPN 732
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
AL A++LI+QVDRKLVKQTVMTSVYGVT+ GA++QI++RL+E+ I ++R LF A+CYAA
Sbjct: 733 ALHARLLINQVDRKLVKQTVMTSVYGVTYAGAKDQIRQRLKERSSIENERHLFTASCYAA 792
Query: 832 KVS 834
K +
Sbjct: 793 KTT 795
>gi|224119272|ref|XP_002331270.1| predicted protein [Populus trichocarpa]
gi|222873695|gb|EEF10826.1| predicted protein [Populus trichocarpa]
Length = 847
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/671 (61%), Positives = 535/671 (79%), Gaps = 8/671 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+ LRRRQVK E EAWE+ EYKEL M E +LAPNLP++KGLFLGWF PL +
Sbjct: 1 MGSGKYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRD 60
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI +EQ+ R K + Y+P+ +LLPAD ++VI MHK+ +VM G E C +VV AA I
Sbjct: 61 AIAKEQESIRRGKTRPDYSPYFDLLPADMMSVITMHKLTAMVMIGGEHGCARVVAAACMI 120
Query: 290 GMAIEQEIRIHSFLEKTKNYKR-----KKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
G AIEQEIRIH+FLEKT+ K K + + E+E LRK+V LIK +++
Sbjct: 121 GDAIEQEIRIHNFLEKTRKKKENADNSKNSVEGESPAVMNEEEKLRKKVTDLIKKQKLPA 180
Query: 345 AQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+K++K ++++K W D +AK+GSRL+ELL++TAY+Q P + SPPD+RPAF H F+T
Sbjct: 181 VRKIVKGHDDSKSWSTDAKAKVGSRLIELLLQTAYIQPPPDQLADSPPDLRPAFVHTFRT 240
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
+ + +KT+++YGV++CD LVL+GL+++ +H++IPY+PMLVPP +W+GY+KG +LFLPS
Sbjct: 241 V-SYENKKTSRKYGVIQCDSLVLKGLEQTDRHIVIPYMPMLVPPLRWRGYDKGAHLFLPS 299
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMR HG+++Q+EA+K ++ VFEALDTLG+TKWRVNK+VLSV++ IW +GG +A
Sbjct: 300 YVMRIHGAKQQREAVKRTPKKQLQLVFEALDTLGNTKWRVNKRVLSVVDRIWNNGGRLAD 359
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR+DV +PEKP +ED ++KWKW V+ KK N+ERHS+RCDTELK++VAR+MK+EEG
Sbjct: 360 LVDRSDVPLPEKPETEDEALLKKWKWKVKSVKKENRERHSRRCDTELKIAVARKMKNEEG 419
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLANLF+ GV
Sbjct: 420 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLFACGV 479
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLSH+GR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+SSSP +
Sbjct: 480 DKLSHEGRIAFTENHLDDIFDSADKPLEGKRWWLHAEDPFQCLAVCINLTEALRSSSPET 539
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
+SH+PIHQDGSCNGLQHYAALGR+ L AAAVNLVAGEKP DVYS IA RV +IM+ D+
Sbjct: 540 CLSHIPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPTDVYSGIAARVLDIMRSDAQ 599
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
+DP P AL A+ LI QVDRKLVKQTVMTSVYGVT++GAR+QI+RRL+E+G +TD+ ++
Sbjct: 600 EDPEVFPDALRARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIERRLKERG-LTDNSEI 658
Query: 824 FAAACYAAKVS 834
F +CYAAKV+
Sbjct: 659 FGCSCYAAKVT 669
>gi|297841627|ref|XP_002888695.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
gi|297334536|gb|EFH64954.1| mitochondrial DNA-directed RNA polymerase [Arabidopsis lyrata
subsp. lyrata]
Length = 975
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/673 (59%), Positives = 522/673 (77%), Gaps = 9/673 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +K+ +LR+RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 126 MGAQKYYMLRQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKTLFLGWFEPVRN 185
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + + KK K YAP +E LPADK+AVI M+KMMGL+M E V++V AA
Sbjct: 186 AIQADLDLFKIKKGKIPYAPFMEQLPADKMAVITMNKMMGLLMTNVEGVGIVKLVNAATQ 245
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE ++KE E RKR L++ ++
Sbjct: 246 IGEAVEQEVRINSFLQKNNKKNATGKTINTEAVHVSEETVAKETEKARKRATVLMEKNKL 305
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
E + L+ K++ KPWG++ Q K+G+RL++LLIE AY+Q P D PPD+RPAF+ F
Sbjct: 306 REVKVLVRKHDSFKPWGQEAQVKVGARLIQLLIENAYIQPPAEQFDDGPPDIRPAFKQNF 365
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G +LFL
Sbjct: 366 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHLFL 424
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PS++MRTHG+ +Q+ ++ ++ VFEALDTLG+TKWR+NK+VLS+++ IW +GG +
Sbjct: 425 PSFIMRTHGAIQQRTVMRRTPKEQLEPVFEALDTLGNTKWRINKKVLSLVDRIWANGGRL 484
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV +PE+P ED + + WKW +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 485 GGLVDREDVPVPEEPEREDHEKFKNWKWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 544
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 545 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 604
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +I+DS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 605 GVDKLAYEDRIAFTESHLEDIYDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 664
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 665 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYAEIAARVFKIMQQD 724
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD
Sbjct: 725 AKEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 784
Query: 822 QLFAAACYAAKVS 834
F AACYAAK++
Sbjct: 785 LTFHAACYAAKIT 797
>gi|2330568|emb|CAA69331.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Arabidopsis thaliana]
Length = 976
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/673 (58%), Positives = 521/673 (77%), Gaps = 9/673 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G + FL
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 425
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ IW +GG I
Sbjct: 426 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 485
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV IP +P ED + + W+W +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 486 GGLVDREDVPIPVEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 545
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 546 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 605
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 606 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 665
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 666 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 725
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ AR+QIK+RL+E+G DD
Sbjct: 726 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSSARDQIKKRLKERGTFEDDS 785
Query: 822 QLFAAACYAAKVS 834
F A+CYAAK++
Sbjct: 786 LTFHASCYAAKIT 798
>gi|334183757|ref|NP_001185355.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
gi|332196753|gb|AEE34874.1| DNA-directed RNA polymerase 1 [Arabidopsis thaliana]
Length = 983
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/680 (58%), Positives = 523/680 (76%), Gaps = 16/680 (2%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRS-------AKHMLIPYVPMLVPPKKWKGYN 454
+T+ KT++RYG +ECDPLVL+GLD+S A+HM+IPY+PML+PP+ W GY+
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHMVIPYLPMLIPPQNWTGYD 425
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
+G + FLPSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ I
Sbjct: 426 QGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRI 485
Query: 515 WVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
W +GG I GLVDR DV IPE+P ED + + W+W +KA K N ERHSQRCD ELKL V
Sbjct: 486 WANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEV 545
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR+MKDEEGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH
Sbjct: 546 ARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIH 605
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
+ANL++GGV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSE
Sbjct: 606 IANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSE 665
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
AL+S P + ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV
Sbjct: 666 ALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARV 725
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+IM++D+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+
Sbjct: 726 LKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKER 785
Query: 815 GHITDDRQLFAAACYAAKVS 834
G DD F A+CYAAK++
Sbjct: 786 GTFEDDSLTFHASCYAAKIT 805
>gi|90657592|gb|ABD96891.1| hypothetical protein [Cleome spinosa]
Length = 1021
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/681 (59%), Positives = 528/681 (77%), Gaps = 27/681 (3%)
Query: 160 KRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGL 219
+R+K QE M ++K+ L+RRQVK ETEAWE+ +EYKEL M E++LAPNLP++K L
Sbjct: 174 RRVKRQEDLGMLEKKYQSLKRRQVKIETEAWEKAANEYKELLTDMCEQKLAPNLPYVKSL 233
Query: 220 FLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
FLGWF PL EAI ++Q++ R K +A YA +I+ LPAD +AVI MHK+MGL+M G ++ C
Sbjct: 234 FLGWFEPLREAIAKDQELYRLGKNRANYAYYIDQLPADMIAVITMHKLMGLLMTGGDNGC 293
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT-----EEVLSKEKELLRKRVN 334
V+V+ AA +G AIEQEIRI FLEKTK K+K+ I++ +E KE++ L+++V+
Sbjct: 294 VKVIMAACTVGDAIEQEIRICRFLEKTK--KKKENISEGVENVEKETTVKEEDWLKRKVS 351
Query: 335 SLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
LIK +++ +++L + + +KPW D +AK+GSRL+EL ++TAY+Q P N PPD+
Sbjct: 352 ELIKKQKLPAVRQILNSHDASKPWSTDVRAKVGSRLIELFMKTAYIQPPTNQRGDDPPDI 411
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGY 453
RPAF H FKT+ +K+ +RYGV+ECDPLV +GL+++ HM++PY+PMLVPP W GY
Sbjct: 412 RPAFVHTFKTVKN--SKKSGRRYGVIECDPLVRKGLEKTGWHMVMPYMPMLVPPVNWSGY 469
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
++G Y FLPSY+MR HG+++Q+EALKS ++ VFEALDTLG+ KWRVNK+VLS+++
Sbjct: 470 DRGAYFFLPSYLMRIHGAKQQREALKSTPRKQLQLVFEALDTLGNAKWRVNKRVLSIVDR 529
Query: 514 IWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
IW SGG +A LVDR+DV +PEKP +ED ++KWKW V+ A K N+ERHSQRCD ELKL+
Sbjct: 530 IWNSGGRLADLVDRSDVPLPEKPDTEDENILKKWKWKVKSANKENRERHSQRCDIELKLN 589
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
VAR+MKDEEGFYYPHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEG+PLG SGLRWLKI
Sbjct: 590 VARKMKDEEGFYYPHNIDFRGRAYPMHPHLNHLGSDLCRGVLEFAEGKPLGSSGLRWLKI 649
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL++GGV+KLS +GRLAF ENHL +IF+SA+ P+ G RWWL AEDPFQCLA CIN++
Sbjct: 650 HLANLYAGGVDKLSFEGRLAFTENHLDDIFNSADRPLEGRRWWLQAEDPFQCLAVCINIT 709
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
EAL+S P + +SH+PIHQ G AAAVNLVAGEKPADVYS IA R
Sbjct: 710 EALRSPCPETFVSHIPIHQLG-----------------AAAVNLVAGEKPADVYSGIAAR 752
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V +IM+RD+ +DP P AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E
Sbjct: 753 VLDIMRRDAEQDPEVFPDALRARNLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 812
Query: 814 KGHITDDRQLFAAACYAAKVS 834
+ TDD +LF AACYAAKV+
Sbjct: 813 RSIFTDDTELFGAACYAAKVT 833
>gi|242093768|ref|XP_002437374.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
gi|241915597|gb|EER88741.1| hypothetical protein SORBIDRAFT_10g025820 [Sorghum bicolor]
Length = 960
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/660 (61%), Positives = 526/660 (79%), Gaps = 7/660 (1%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+RQVK ETEAW R +EY+E+E +M+++RLAP LP++K LF+GWF PL +AI R+Q +
Sbjct: 127 LRQRQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKSLFVGWFEPLRDAIARDQDV 186
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQE 296
QR K+ K YA ++ LLPADKVAVIVMHKMMGL+M+ + V+VVQAA IG A+E+E
Sbjct: 187 QRRKRVKHVYAKYLLLLPADKVAVIVMHKMMGLLMSSKDGTGSVRVVQAAHCIGEAVERE 246
Query: 297 IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETK 355
++ SF +K++ +KK + + L KE+ RKRV +L+K +++ EAQKL++ E E +
Sbjct: 247 FKVQSFFQKSR---KKKDQGENDPALEKEQAKCRKRVKTLVKRRKMSEAQKLVQQELELE 303
Query: 356 PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
WG + Q KLGSRL+ELL+++A+VQ P + S PD+RPAF+H + + G + K+
Sbjct: 304 EWGTEAQVKLGSRLIELLLDSAFVQPPADQIPDSSPDIRPAFKHVLRQPIIENG-RLKKK 362
Query: 416 YGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
+ V+ECD LV +G + +A+H+ IPY+PMLVPPKKWKGYNKGG+LFLPSY+MRTHG + Q+
Sbjct: 363 HWVIECDHLVHDGFESTARHVDIPYLPMLVPPKKWKGYNKGGHLFLPSYIMRTHGVKDQK 422
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK 535
+A+ SV ++KVFEALD LGSTKWRVN++V V+E+IW GG IAGLVD+ ++ +PE+
Sbjct: 423 DAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSRGGGIAGLVDKANIPLPER 482
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
P SED E+QKWKWS++KAKK N+E H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGR
Sbjct: 483 PESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREEDGFYYPHNLDFRGR 542
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPMHPHL+HL SD+CRGVLE+AEGRPLGKSGL WLKIHLAN + GGVEKLSH+G+LAFV
Sbjct: 543 AYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGGGVEKLSHEGKLAFV 602
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
EN L +IFDSA NP++G+ WW AEDPFQCLAAC++LS+AL S SP+ +SHLPIHQDGS
Sbjct: 603 ENQLLDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALNSPSPYRTVSHLPIHQDGS 662
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL- 774
CNGLQHYAALGR+ + A AVNLV GEKPAD+YSEIA RV +++ DS KDP+ +P A L
Sbjct: 663 CNGLQHYAALGRDYMGAVAVNLVPGEKPADIYSEIAARVLNVVREDSMKDPATNPTASLD 722
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
I QVDRKLVKQTVMTSVYGVT++GAR+QI +RL+EKG I DD+ L+ +CYA +V+
Sbjct: 723 MGIGSLQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLIADDKLLYDVSCYATRVT 782
>gi|62750823|emb|CAC80138.1| DNA-dependent RNA polymerase [Spinacia oleracea]
Length = 1036
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/671 (58%), Positives = 528/671 (78%), Gaps = 9/671 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+ LR RQ+K ETE+W++ +EYKEL A M + +LAPNLP++K LFLGWF P +
Sbjct: 191 MPLYKYQKLRNRQIKLETESWQQAANEYKELLADMCKLKLAPNLPYVKSLFLGWFEPFRD 250
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+I +Q++ R K + AY + + LPAD +A+I MHK+MG++M G V+VVQAA +
Sbjct: 251 SIIEDQELIRQGKCRGAYGTYFDQLPADMMAIITMHKLMGMLMTGSGHGSVKVVQAACAL 310
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKI-----IADTEEVLSKEKELLRKRVNSLIKSKRVME 344
G AIEQE+RIH+FLEK K K + A E+ +E++ LRK VN+LIK ++ +
Sbjct: 311 GEAIEQEVRIHTFLEKAKKKKGDRSKKPDDAASDAEI--QEQQHLRKNVNNLIKKQKRRQ 368
Query: 345 AQKLLKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A K++ ++ + KPWG +T+AK+GSRL+ELLI+TAY+Q P + + PPD+RPAF H K+
Sbjct: 369 ALKIVDSQGDLKPWGSETRAKVGSRLIELLIQTAYIQPPASQSACDPPDLRPAFVHSLKS 428
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
+ +KT +R+G++ECDPL+++GL+++ +H++IPY+PMLVPP+KW GY+KG YL L S
Sbjct: 429 VGPE-NKKTGRRFGMIECDPLIIKGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYLVLRS 487
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+VMRTHGS+ Q+ A++ + +K VFEALDTLG+TKWRVNK+VLS+++ +W +GG +A
Sbjct: 488 FVMRTHGSKHQRVAVRRASEEQLKSVFEALDTLGNTKWRVNKKVLSIVDRVWANGGRLAD 547
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR+DV +PEKP +ED +E+++WKW VR KK N+ERHSQRCD ELKL+VAR+MKDEEG
Sbjct: 548 LVDRDDVPLPEKPDTEDESELKRWKWKVRSLKKENRERHSQRCDVELKLAVARKMKDEEG 607
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
F+YPHN+DFRGRAYPMHP+LNHL SD+CRG+LEFAEGR +GKSGLRWLKIH+ANL++GG+
Sbjct: 608 FFYPHNVDFRGRAYPMHPYLNHLGSDMCRGILEFAEGRAVGKSGLRWLKIHVANLYAGGI 667
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLS +GR+AF ENHL +IFDS + P+ G WWL AEDPFQCLA CI L+EAL+S+ P +
Sbjct: 668 DKLSLEGRIAFTENHLDDIFDSVDKPLEGRCWWLKAEDPFQCLAVCIELAEALRSTRPEA 727
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
SH+P+HQDGSCNGLQHYAALGR+ L A AVNLVAGEKPADVYS IA RV IM+ D+
Sbjct: 728 FKSHIPVHQDGSCNGLQHYAALGRDELGATAVNLVAGEKPADVYSGIASRVLSIMEADAK 787
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
KDP+ P +LA+ LI+QVDRKLVKQTVMTSVYGVT++GAREQIKRRL+E+ +DD ++
Sbjct: 788 KDPTDFPDTVLARKLINQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERAAFSDDTEI 847
Query: 824 FAAACYAAKVS 834
+ AACY A+++
Sbjct: 848 YGAACYVARIT 858
>gi|1865721|emb|CAA69305.1| mitochondrial single-subunit DNA-dependent RNA polymerase
[Chenopodium album]
Length = 988
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/667 (59%), Positives = 521/667 (78%), Gaps = 4/667 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M ++N+LR+RQ+K ETEAW EY+EL A M E++LAPNLP++K LFLGWF PL +
Sbjct: 146 MTAGRYNVLRKRQIKVETEAWNEAAREYQELLADMCEQKLAPNLPYMKSLFLGWFEPLKD 205
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI+ Q+ + + + Y + LPAD +AVI MHK+MGL+M G + V+QAA I
Sbjct: 206 AIKAHQEACKVGRNRPLYGECFDELPADMMAVITMHKLMGLLMTGSGNGGTTVIQAATQI 265
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+EQE +I FLEK+K K+ + E+ +K ++ L K+V +L+K +++ + ++++
Sbjct: 266 GEAVEQEAKIRKFLEKSK--KKPATNNNDEDDSAKAQQRLAKKVTTLMKKQKISQVREIV 323
Query: 350 KN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
+ +++KPW +D Q K+G +L++LL ETAY+Q P + PPD+RPAF H KT+ K
Sbjct: 324 RGQDDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQLADGPPDIRPAFIHTQKTVCKES 383
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+ +RYGV+ECDPLV GL+++A+HM+IPY+PML+PP W GY+KG YL+LPSY+MRT
Sbjct: 384 QKGLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGAYLYLPSYIMRT 443
Query: 469 HGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
HG ++Q++A+K V N + VFEALDTLG+TKWRVNK+VLS+++ IW SGG +A LVDR
Sbjct: 444 HGVKQQRDAIKRVARDNNLCTVFEALDTLGNTKWRVNKKVLSIIDRIWASGGCLADLVDR 503
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
D+ +P +P ++D E++KWKW V+ KK N ERHSQRCDTELKL+VAR+MKDEEGFYYP
Sbjct: 504 EDMPLPGEPDTDDAEEIKKWKWKVKHVKKDNAERHSQRCDTELKLAVARKMKDEEGFYYP 563
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGRPLGKSGL WLK+H+ANL++GGV+KLS
Sbjct: 564 HNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLNWLKVHVANLYAGGVDKLS 623
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
++GR+AF EN L ++FDSA+ P+ G RWWLTAEDPFQCLAACINL++AL+SSSP +SH
Sbjct: 624 YEGRVAFTENRLDDVFDSADRPLEGRRWWLTAEDPFQCLAACINLTDALRSSSPEDYLSH 683
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+PIHQDGSCNGLQHYAALGR+ L A AVNLVAG KPADVYS IA RV EIM+ D+ KDPS
Sbjct: 684 IPIHQDGSCNGLQHYAALGRDKLGAEAVNLVAGGKPADVYSGIAARVFEIMRGDAEKDPS 743
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
P A AK+L++QVDRKLVKQTVMTSVYGVT++G R+QIKRRL+E+ I DD LFAA+
Sbjct: 744 IEPNAFHAKLLLNQVDRKLVKQTVMTSVYGVTYIGVRDQIKRRLKERDAIVDDNDLFAAS 803
Query: 828 CYAAKVS 834
CYAAK +
Sbjct: 804 CYAAKTT 810
>gi|297606283|ref|NP_001058231.2| Os06g0652000 [Oryza sativa Japonica Group]
gi|51534999|dbj|BAD38123.1| putative T7 bacteriophage-type single subunit RNA polymerase [Oryza
sativa Japonica Group]
gi|255677283|dbj|BAF20145.2| Os06g0652000 [Oryza sativa Japonica Group]
Length = 806
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/633 (61%), Positives = 516/633 (81%), Gaps = 7/633 (1%)
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M+++RLAP LP++K LFLGWF PL +AI R+Q++QR K+ K YA ++ LLPADKVAVIV
Sbjct: 1 MLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVIV 60
Query: 264 MHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHKMMGL+M+ + V+VVQAA IG A+E+E ++ +F +KT RKK + + L
Sbjct: 61 MHKMMGLLMSSKDGVASVRVVQAAHCIGEAVEREFKVQTFFQKT----RKKSAGENDLAL 116
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNE-ETKPWGRDTQAKLGSRLVELLIETAYVQH 381
KE+ RKRV SL++ +++ EAQK+++ E E + WG ++Q KLG+RL+ELL+++A+VQ
Sbjct: 117 EKEQAKCRKRVKSLVRRRKLTEAQKIVQQEIELEEWGTESQVKLGTRLIELLLDSAFVQS 176
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYV 441
P + S PD+RPAF+H + + G + K++ V+ECDPLV EG + +A+H+ IPY+
Sbjct: 177 PADQTPESSPDIRPAFKHVLRQPIVENG-RLKKKHWVIECDPLVHEGFESTARHVEIPYL 235
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PMLV PKKWKGY+ GGYLFLPSY+MRTHG + Q+EA+KSV ++KVFEALDTLGSTKW
Sbjct: 236 PMLVTPKKWKGYDTGGYLFLPSYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKW 295
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
RVN++V + +E+IW GG IAGLVD+ ++ +PE+P +ED E+QKWKWS++KAKK N+E
Sbjct: 296 RVNRRVHNAVETIWSRGGGIAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANREL 355
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
H++RCDTELKLSVAR+M++E+GFYYPHNLDFRGRAYPMH HL+HL SD+CRGVLE+AEGR
Sbjct: 356 HAERCDTELKLSVARKMREEDGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGR 415
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLGKSGLRWLKIHLAN + GG+EKLSH+ ++AFVEN L +IFDSA NP++G+ WW+ AED
Sbjct: 416 PLGKSGLRWLKIHLANKYGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAED 475
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQCLAAC++LS+ALKSSSP +SHLPIHQDGSCNGLQHYAALGR+ + AAAVNLV G+
Sbjct: 476 PFQCLAACMDLSDALKSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGD 535
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
KPAD+YSEIA RV ++++ DS +DP+ +P A LA++L+DQVDRKLVKQTVMTSVYGVT++
Sbjct: 536 KPADIYSEIAARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYI 595
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
GAR+QI +RL+EKG ITDD+ L+ +CYA +V+
Sbjct: 596 GARQQITKRLQEKGLITDDKLLYEVSCYATRVT 628
>gi|255547027|ref|XP_002514571.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
gi|223546175|gb|EEF47677.1| DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor,
putative [Ricinus communis]
Length = 997
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/674 (60%), Positives = 533/674 (79%), Gaps = 15/674 (2%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +L++RQ+K ETEAWE EY+EL M E++LAPNLP+IK LFLGWF PL +AI +
Sbjct: 148 KYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAK 207
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE-DRCVQVVQAAVHIGMA 292
EQ++ R K K ++ P+ + LPAD +AVI MHK+MGL+M + + V+VVQAA +G A
Sbjct: 208 EQELSREKNNKLSHGPYFDALPADMMAVITMHKLMGLLMTTNGGNGSVRVVQAACAVGEA 267
Query: 293 IEQEIRIHSFLEKTKNY-----------KRKKIIADTEEVLSKEKELLRKRVNSLIKSKR 341
IE E RIH FLEKTK K + + +D E+ L+KE+E LRK+V L+K ++
Sbjct: 268 IEHEARIHRFLEKTKKKKKSTKNEEPEGKLEPVTSDAEK-LAKEQEKLRKKVTELMKKQK 326
Query: 342 VMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V + + L K ++++ PWG++ Q K+G RL++LLIETAY+Q PVN PD+RPAF H
Sbjct: 327 VQQVRGLTKGHDDSMPWGQEAQVKVGCRLIQLLIETAYIQPPVNQLGDGLPDIRPAFMHT 386
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
K ++K QKT++RYGV+ECDP+V GL++SA+HM+IPY+PMLVPP W+GY++G YLF
Sbjct: 387 LKNVMKDT-QKTSRRYGVIECDPIVRNGLEKSARHMVIPYMPMLVPPLNWEGYDQGAYLF 445
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
LPSYVMRTHG+++Q+ A+K ++ V+EAL+TLG+TKWR+NK++L+V++ IW +GG
Sbjct: 446 LPSYVMRTHGAKQQRNAVKRTPWKQLEPVYEALNTLGNTKWRINKKILTVVDRIWANGGR 505
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+AGL+DR D +PE+ +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKD
Sbjct: 506 LAGLIDREDEPLPEELETEDENEIKKWKWKVKNVKKENSERHSQRCDIELKLAVARKMKD 565
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E+GFYYPHNLDFRGRAYPMHPHLNHL SD+CRG+LEFAEGRPLGKSG RWLKIHLAN+++
Sbjct: 566 EDGFYYPHNLDFRGRAYPMHPHLNHLGSDMCRGILEFAEGRPLGKSGFRWLKIHLANVYA 625
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GGV+KLS++GR+AF ENHL IFDSA+ P+ G RWWL AEDPFQCLA C NL+EA +SSS
Sbjct: 626 GGVDKLSYEGRVAFTENHLDYIFDSADRPLEGRRWWLGAEDPFQCLATCFNLAEAFRSSS 685
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + ISH+PIHQDGSCNGLQHYAALGR+ L AAAVNLV+GEKPADVYS IA RV +IM+
Sbjct: 686 PETTISHMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVSGEKPADVYSGIAARVLDIMRT 745
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D+ KDP +P AL AK+LI++VDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ + DD
Sbjct: 746 DAEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERDAVADD 805
Query: 821 RQLFAAACYAAKVS 834
L+AA+CYAAK +
Sbjct: 806 PSLYAASCYAAKTT 819
>gi|356526655|ref|XP_003531932.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 949
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/665 (60%), Positives = 516/665 (77%), Gaps = 11/665 (1%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
RRQ+K ETEAW EY+EL M E++LAPNLP++K LFLGWF PL AI +Q++ +
Sbjct: 108 RRQIKSETEAWAEAAREYEELLEDMREQKLAPNLPYMKSLFLGWFEPLRNAILADQELCK 167
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQEIR 298
K + ++AP+ LPAD +AV+ MHK+M L+M +V+QAA IG A+E E R
Sbjct: 168 DSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNTNGVGTARVIQAACQIGEAVENEAR 227
Query: 299 IHSFLEKTKNYKRKKIIAD------TEE--VLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
I+ F+++ K K ++ TEE + K++ LRKRV +L+K ++ ++A +++
Sbjct: 228 IYQFMKREKENKSSHVVPVEQRGELTEENGEMDKKQSRLRKRVAALMKKQKKLQAMGIVR 287
Query: 351 NEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
++ K WG++ Q K+GSRL++LLIETAY+Q P N PPD+RPAF+H KT L
Sbjct: 288 GQDDWKAWGQEAQVKVGSRLMQLLIETAYIQPPANLIGDGPPDIRPAFKHTLKT-LSSES 346
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
QK T+RYGV+ECDPLV GL++SA+HM+IPY+PMLVPP W GY+KG YLFLPSYVMR H
Sbjct: 347 QKETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPSYVMRVH 406
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
G+++Q+EA+K + + VFEAL+TLGSTKWRVNK+VL V++ IW +GG +A LVDR +
Sbjct: 407 GAKQQREAVKRAPKSQLDPVFEALNTLGSTKWRVNKRVLCVIDQIWANGGRLADLVDREN 466
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
V P++P ++D E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDEEGFYYPHN
Sbjct: 467 VPEPKEPDTKDEAEIRKWKWKVKAVKKENNERHSQRCDIELKLAVARKMKDEEGFYYPHN 526
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYPMHP+LNHL SD+CRG+LEF+EGRPLGKSGL WLKIHLANL++GGV+KLS+D
Sbjct: 527 LDFRGRAYPMHPYLNHLGSDLCRGILEFSEGRPLGKSGLCWLKIHLANLYAGGVDKLSYD 586
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
GR+ F ENHL +IFDSA+ P+ G RWWL AEDPFQCLAAC NLSEAL+S +P + ISH+P
Sbjct: 587 GRIEFTENHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACTNLSEALRSPTPETTISHMP 646
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ L AAAVNLV G++PADVYS IA RV EIMKRD+ KDP +
Sbjct: 647 VHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAEKDPQTN 706
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
P AL A+ LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD +LFAA+CY
Sbjct: 707 PNALHARRLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVELFAASCY 766
Query: 830 AAKVS 834
AA+ +
Sbjct: 767 AARTT 771
>gi|195970381|gb|ACG60670.1| hypothetical protein BoB028L01.020 [Brassica oleracea var.
alboglabra]
Length = 951
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/672 (56%), Positives = 518/672 (77%), Gaps = 8/672 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +K+ L++RQVK ETE WE+ E +E+ M E++LAPNLP++K LFLGWF PL +
Sbjct: 119 MGAQKYYSLKQRQVKLETEEWEKAAKECQEIIEDMCEQKLAPNLPYVKSLFLGWFEPLRD 178
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YA ++E LPAD +AVI MHKMMGL+M E V+VV AA
Sbjct: 179 AIQADLDGFKVKKGKIPYASYMEQLPADMMAVITMHKMMGLLMTNAEGVGVVKVVNAATQ 238
Query: 289 IGMAIEQEIRIHSFLEKTKNY-----KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
IG AIEQE RI SF++K K + + + EV +KE L+K++N+L+K +V
Sbjct: 239 IGEAIEQEARITSFMKKAKKKKNVVDDESEAVNASGEVETKETLKLKKQINTLLKKHKVR 298
Query: 344 EAQKLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ ++++K ++ K WG++ Q K+G+RL++LL+ETAY+Q P D PP++RPAF+ +
Sbjct: 299 QVREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQPPAEQFDDGPPEIRPAFKQSSR 358
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
I+ +K +++YG +ECDPL+ +GLD+SA+HM+IPY+PML+PP+ W GY++G + FLP
Sbjct: 359 -IVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLP 417
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
SY+MRTHG+++Q+ A+K ++ VF+ L+TLG+TKWR+NK+VLS+++ IW +GG +
Sbjct: 418 SYIMRTHGAKQQRIAIKRTPKAQLEPVFQGLNTLGNTKWRINKKVLSLVDRIWANGGRVG 477
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
GLVDR+DV IPE+P SED E+++WKW +++A K N ERHSQRCD ELKL VAR+MKDEE
Sbjct: 478 GLVDRDDVPIPEEPDSEDQEEIKQWKWKMKEANKENSERHSQRCDVELKLEVARKMKDEE 537
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
GFY+PHN+DFRGRAYPMHP+LNHL SD+CRG+LEF EG+PLG+SGLRWLKIH+ANL+ GG
Sbjct: 538 GFYFPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFCEGKPLGESGLRWLKIHIANLYGGG 597
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
V+K ++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAAC+NLSEAL+S P
Sbjct: 598 VDKFAYKDRVAFAESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACMNLSEALRSPFPE 657
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ +SH+PIHQDGSCNGLQHYAALGR+ + AAAVNL GEKPADVY++IA RV IM++D+
Sbjct: 658 AAVSHIPIHQDGSCNGLQHYAALGRDQIGAAAVNLFTGEKPADVYADIAARVLNIMRQDA 717
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
+DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD Q
Sbjct: 718 EEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGAFADDSQ 777
Query: 823 LFAAACYAAKVS 834
F A+CYAA+V+
Sbjct: 778 NFHASCYAARVT 789
>gi|356560775|ref|XP_003548663.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Glycine max]
Length = 955
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/671 (59%), Positives = 513/671 (76%), Gaps = 13/671 (1%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ LL+RRQ++ ETEAW EY EL M +K+LAPNLP++K LFLGWF PL AI
Sbjct: 110 KYKLLKRRQIESETEAWAEAAREYGELLEDMRDKKLAPNLPYMKSLFLGWFEPLRNAILA 169
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMA 292
+Q + + K + ++AP+ LPAD +AV+ MHK+M L+M +V+QAA IG A
Sbjct: 170 DQDLCKDSKCRMSHAPYFNDLPADMMAVVTMHKLMALLMTNANGVGTARVIQAACQIGEA 229
Query: 293 IEQEIRIHSFLEKTKNYKRKKI--------IADTEEVLSKEKELLRKRVNSLIKSKRVME 344
+E E RI+ F+++ K K + + + + +++ LRKRV L+K ++ ++
Sbjct: 230 VENEARIYQFMKREKENKSSHLAPVEQSGKLTEENGEMEQKQSRLRKRVAGLMKKQKKLQ 289
Query: 345 AQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
A ++ + ++ K WG++ Q K+GSRL++LLIETAY+Q P N PPD+ PAFRH +T
Sbjct: 290 AMGIIGRQDDWKTWGQEAQVKVGSRLMQLLIETAYIQPPTNQIGDGPPDIHPAFRHTLRT 349
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
+ ++ T+RYGV+ECDPLV GL++SA+HM+IPY+PMLVPP W GY+KG YLFLPS
Sbjct: 350 L---SNERETRRYGVIECDPLVQNGLEKSARHMVIPYMPMLVPPINWTGYDKGAYLFLPS 406
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
YVMR HG+++Q+EA+K + + VFEAL+TLG+TKWRVNK+VL V++ IW +GG +A
Sbjct: 407 YVMRVHGAKQQREAVKRAPKSQLDPVFEALNTLGNTKWRVNKRVLCVIDQIWANGGRLAD 466
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
LVDR +V P++P + D E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDEE
Sbjct: 467 LVDRENVPSPKEPDTIDEAEIRKWKWKVKAVKKENSERHSQRCDIELKLAVARKMKDEEA 526
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGR LGKSGLRWLKIHLANL++GGV
Sbjct: 527 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRSLGKSGLRWLKIHLANLYAGGV 586
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+KLS+DGR++F ENHL +IFDSA+ P+ G WWL AEDPFQCLAACINLSEAL+S +P +
Sbjct: 587 DKLSYDGRISFTENHLDDIFDSADRPLEGKHWWLQAEDPFQCLAACINLSEALRSPTPET 646
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLV G++PADVYS IA RV EIMKRD+
Sbjct: 647 TISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKRDAE 706
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
KDP +P AL A+ LI QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+ I DD +L
Sbjct: 707 KDPRTNPNALHARRLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIEDDVEL 766
Query: 824 FAAACYAAKVS 834
FAA+CYAAK +
Sbjct: 767 FAASCYAAKTT 777
>gi|449493526|ref|XP_004159332.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like, partial [Cucumis
sativus]
Length = 764
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/596 (61%), Positives = 467/596 (78%), Gaps = 12/596 (2%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR-CVQVVQAAVHIGMAIEQEIRI 299
K+ ++A + LLPAD +AVI MHK+MGL+M+ E V+V QAA IG AIE E+RI
Sbjct: 1 KRSSPSHALYFHLLPADMMAVITMHKLMGLLMSDIEGGGSVRVTQAASGIGEAIENEVRI 60
Query: 300 HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWG 358
+F EKTK E L++ + LRK++ L+K +++ + ++KN +++KPWG
Sbjct: 61 RNFFEKTKK---------QPEQLAEGHDKLRKKLTKLMKQQKLQKVNFIVKNHDDSKPWG 111
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGV 418
D K+G RL++LLIETAY+Q PV+ +PPD+RPAF H KT LK Q+ KRYGV
Sbjct: 112 TDAHVKVGCRLIQLLIETAYIQPPVDQIGDAPPDLRPAFVHSLKTSLKE-SQRLGKRYGV 170
Query: 419 VECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ECDPLV G+ ++A HM+IPY+PMLVPP+KW GY++G + FLPSYVMR G+R+Q+EA+
Sbjct: 171 IECDPLVYRGMVKTAGHMIIPYMPMLVPPRKWTGYDQGAHFFLPSYVMRIRGARQQREAV 230
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS 538
K + + VF+ALD LGSTKWRVNK+VLSV+E IW SGG +A LVDR D+ +PE+P+
Sbjct: 231 KRASKKQLGPVFKALDILGSTKWRVNKRVLSVIEKIWASGGRLADLVDREDMPLPEQPMV 290
Query: 539 EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
ED E++ WKW V+ K+ N ERHSQRCDTELKL+VAR+MK+EEGFYYPHNLDFRGRAYP
Sbjct: 291 EDEAEIRNWKWKVKAVKRENSERHSQRCDTELKLAVARKMKEEEGFYYPHNLDFRGRAYP 350
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
MHPHLNH+ SD CRG LEFAEGRPLG+SGLRWLKIHLANL++GGV+KLS+ R++F ENH
Sbjct: 351 MHPHLNHIGSDFCRGTLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYKDRISFTENH 410
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
L EIFDSA+ P+ GSRWWL AEDPFQCLA CI+LSEAL+S SP + ISH+P+HQDGSCNG
Sbjct: 411 LDEIFDSADRPLEGSRWWLGAEDPFQCLAVCIDLSEALRSPSPETTISHMPVHQDGSCNG 470
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+ L A AVNL AG+KPADVYS IA RV +IM+ D+ KDP+ +P AL A++L
Sbjct: 471 LQHYAALGRDKLGAEAVNLAAGDKPADVYSGIASRVLDIMRSDAAKDPASNPNALHARLL 530
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
I+QVDRKLVKQTVMTSVYGVT+ GA++QI++RL+E+ I ++R LF A+CYAAK +
Sbjct: 531 INQVDRKLVKQTVMTSVYGVTYAGAKDQIRQRLKERSSIENERHLFTASCYAAKTT 586
>gi|21425673|emb|CAC95024.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 562
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/541 (65%), Positives = 451/541 (83%), Gaps = 5/541 (0%)
Query: 297 IRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK-NEE 353
+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ ++++ ++
Sbjct: 1 VRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDD 59
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTT 413
+KPWG+D +AK+GSRL+ELL++TAY+Q P N PPD+RPAF H +T+ K + +
Sbjct: 60 SKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKET-KSAS 118
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
+RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVMRTHG+R+
Sbjct: 119 RRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQ 178
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
Q+EA+K + N ++ VFEALDTLGSTKWR+NK+VLSV++ IW GG +A LVDR+D +P
Sbjct: 179 QREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLP 238
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
E+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEEGF+YPHN+DFR
Sbjct: 239 EEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFR 298
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGLRWLKIHLANLF+GGVEKLS +GR+A
Sbjct: 299 GRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIA 358
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F ENH+ +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + ISH+P+HQD
Sbjct: 359 FTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQD 418
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
GSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP++ P A+
Sbjct: 419 GSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAV 478
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF AACYAAKV
Sbjct: 479 RARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKV 538
Query: 834 S 834
+
Sbjct: 539 T 539
>gi|21425669|emb|CAC95022.1| mitochondrial RNA polymerase [Nicotiana tabacum]
Length = 715
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/541 (64%), Positives = 444/541 (82%), Gaps = 9/541 (1%)
Query: 298 RIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +K++K ++
Sbjct: 2 RIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDD 59
Query: 355 -KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTT 413
KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+ K +
Sbjct: 60 EKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV---ETMKGS 116
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
+RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+MRTHG+++
Sbjct: 117 RRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQ 176
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL +++ IW SGG +A LVDR DV +P
Sbjct: 177 QREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLP 236
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
E P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHNLDFR
Sbjct: 237 EAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFR 296
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+KLS++GR+A
Sbjct: 297 GRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVA 356
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + IS++PIHQD
Sbjct: 357 FSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQD 416
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
GSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KDP+ P +
Sbjct: 417 GSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVM 476
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFAAACYAAK
Sbjct: 477 RARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKT 536
Query: 834 S 834
+
Sbjct: 537 T 537
>gi|168053868|ref|XP_001779356.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669272|gb|EDQ55863.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1088
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/680 (50%), Positives = 466/680 (68%), Gaps = 22/680 (3%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
LR RQ K ETEAW + EYKEL A+M +K LAPNLP + L LGWF PL +AI +EQK
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ +A Y P + LPAD +AVI MH++M L+M+ E CV+VV AA+ IG A+E
Sbjct: 289 YEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEAVE 348
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-NSLIKSKRVMEAQK------ 347
QE+ I+ L + +K + + L + NS++ S ++ K
Sbjct: 349 QEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEKVKKL 408
Query: 348 ------------LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP 395
+ + +PWG Q K+GSRL+EL++ET+ ++ P + ++RP
Sbjct: 409 VKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMTELRP 468
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNK 455
AF+H + + YGV+ECDP V+ LD+S +HM++PY+PMLV P+ W G+
Sbjct: 469 AFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYD 528
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGYL L S +MRTHG+++ ++ + S M K+ +ALD LGST+W++N VL VLE +W
Sbjct: 529 GGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVLEQMW 588
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A LVD DV +P+KP S+D E++ W+ AK+ N ERHS RCDTELKL+ A
Sbjct: 589 KDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAA 648
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+++DEEGF+YPHNLDFRGRAYP+HPHLNHL SD+CRG+L+FAEGR LG +GLRWLKIHL
Sbjct: 649 RKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHL 708
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G V K+S D R+A+V+ + ++FDSA+ P++GSRWWL AEDPFQ LA C+++ A
Sbjct: 709 ANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNA 768
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+KS +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNLVAG+KPADVYS IA RV
Sbjct: 769 IKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVR 828
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
EIM+RD+ KDP A AK+L+ ++DRKLVKQTVMTSVYGVTFVGAR QI RL+E+G
Sbjct: 829 EIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKERG 888
Query: 816 HITDDRQLFAAACYAAKVSN 835
I + +++ AACYAAKV+
Sbjct: 889 TIQEQTEMYRAACYAAKVTT 908
>gi|18077581|emb|CAC95163.1| RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/679 (50%), Positives = 465/679 (68%), Gaps = 22/679 (3%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
LR RQ K ETEAW + EYKEL A+M +K LAPNLP + L LGWF PL +AI +EQK
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ +A Y P + LPAD +AVI MH++M L+M+ E CV+VV AA+ IG A+E
Sbjct: 289 YEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEAVE 348
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-NSLIKSKRVMEAQK------ 347
QE+ I+ L + +K + + L + NS++ S ++ K
Sbjct: 349 QEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEKVKKL 408
Query: 348 ------------LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP 395
+ + +PWG Q K+GSRL+EL++ET+ ++ P + ++RP
Sbjct: 409 VKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMTELRP 468
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNK 455
AF+H + + YGV+ECDP V+ LD+S +HM++PY+PMLV P+ W G+
Sbjct: 469 AFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYD 528
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGYL L S +MRTHG+++ ++ + S M K+ +ALD LGST+W++N VL VLE +W
Sbjct: 529 GGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVLEQVW 588
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A LVD DV +P+KP S+D E++ W+ AK+ N ERHS RCDTELKL+ A
Sbjct: 589 KDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAA 648
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+++DEEGF+YPHNLDFRGRAYP+HPHLNHL SD+CRG+L+FAEGR LG +GLRWLKIHL
Sbjct: 649 RKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHL 708
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G V K+S D R+A+V+ + ++FDSA+ P++GSRWWL AEDPFQ LA C+++ A
Sbjct: 709 ANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNA 768
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+KS +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNLVAG+KPADVYS IA RV
Sbjct: 769 IKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVR 828
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
EIM+RD+ KDP A AK+L+ ++DRKLVKQTVMTSVYGVTFVGAR QI RL+E+G
Sbjct: 829 EIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKERG 888
Query: 816 HITDDRQLFAAACYAAKVS 834
I + +++ AACYAAK +
Sbjct: 889 TIQEQTEMYRAACYAAKTT 907
>gi|18642493|dbj|BAB84519.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1087
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/679 (50%), Positives = 465/679 (68%), Gaps = 22/679 (3%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
LR RQ K ETEAW + EYKEL A+M +K LAPNLP + L LGWF PL +AI +EQK
Sbjct: 229 LRMRQFKIETEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKD 288
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ +A Y P + LPAD +AVI MH++M L+M+ E CV+VV AA+ IG A+E
Sbjct: 289 YEERNFREHRAIYGPFLAKLPADMLAVITMHRLMSLLMSDQEHGCVKVVHAALQIGEAVE 348
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-NSLIKSKRVMEAQK------ 347
QE+ I+ L + +K + + L + NS++ S ++ K
Sbjct: 349 QEVGIYKLLRSKRKVAKKVKNKVSGDALDDLDTNTDDSIANSVLDSDLKLKLAKEKVKKL 408
Query: 348 ------------LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP 395
+ + +PWG Q K+GSRL+EL++ET+ ++ P + ++RP
Sbjct: 409 VKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLETSVMRSPADQNAQDMTELRP 468
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNK 455
AF+H + + YGV+ECDP V+ LD+S +HM++PY+PMLV P+ W G+
Sbjct: 469 AFKHTLRNYPIKNKNNMNRIYGVIECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYD 528
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGYL L S +MRTHG+++ ++ + S M K+ +ALD LGST+W++N VL VLE +W
Sbjct: 529 GGYLHLKSTIMRTHGAKELRDTIISTLRQDMIKIVQALDALGSTQWKINNVVLDVLEQMW 588
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A LVD DV +P+KP S+D E++ W+ AK+ N ERHS RCDTELKL+ A
Sbjct: 589 KDGGRLADLVDAEDVPLPDKPESDDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAA 648
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+++DEEGF+YPHNLDFRGRAYP+HPHLNHL SD+CRG+L+FAEGR LG +GLRWLKIHL
Sbjct: 649 RKLRDEEGFFYPHNLDFRGRAYPIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHL 708
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G V K+S D R+A+V+ + ++FDSA+ P++GSRWWL AEDPFQ LA C+++ A
Sbjct: 709 ANLYGGKVGKMSFDARVAWVDEVMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNA 768
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+KS +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNLVAG+KPADVYS IA RV
Sbjct: 769 IKSGNPETYVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVR 828
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
EIM+RD+ KDP A AK+L+ ++DRKLVKQTVMTSVYGVTFVGAR QI RL+E+G
Sbjct: 829 EIMERDAQKDPKTSRHAANAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKERG 888
Query: 816 HITDDRQLFAAACYAAKVS 834
I + +++ AACYAAK +
Sbjct: 889 TIQEQTEMYRAACYAAKTT 907
>gi|357516849|ref|XP_003628713.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522735|gb|AET03189.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 727
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/527 (62%), Positives = 432/527 (81%), Gaps = 3/527 (0%)
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSR 368
K + + A+ E L+KE++ LR +V SLIK ++ +A ++K ++ KPWG++ Q K+GSR
Sbjct: 24 KGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSR 83
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
L++LLIETAY++ P N PD+ PAF+H KTI + ++RYGV+ECDP++ +G
Sbjct: 84 LIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTI-SNDSNNGSRRYGVIECDPMIQKG 142
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK 488
L+++A++M+IPY+PMLVPP W GY+KG YLFLPSYVMR HG+++Q++ALK N +
Sbjct: 143 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 202
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
+FEAL+TLG+TKWRVNK VL V++ IW +GG +A LVDR+D+ +PE+ +ED +E++KWK
Sbjct: 203 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDLPLPEELDTEDESEIRKWK 262
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
W V+ KK N ERHSQRCD ELKL+VAR++K+E+GFYYPHNLDFRGRAYPMHP+LNHL S
Sbjct: 263 WKVKNVKKENNERHSQRCDIELKLAVARKLKEEDGFYYPHNLDFRGRAYPMHPYLNHLGS 322
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLF-SGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+CRG+LEFAEGRPLGK GL+WLKIHLANL+ +GGV+KLS+DGR+AF E+HL +IFDSA+
Sbjct: 323 DLCRGILEFAEGRPLGKKGLQWLKIHLANLYATGGVDKLSYDGRVAFTEDHLDDIFDSAD 382
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
P+ G RWWL AEDPFQCLAACINLSEAL+S +P + +SH+P+HQDGSCNGLQHYAALGR
Sbjct: 383 RPLEGKRWWLQAEDPFQCLAACINLSEALRSPNPEATLSHMPVHQDGSCNGLQHYAALGR 442
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ L A+AVNLV G+KPADVYS IA RV +IMKRD+ KDP+ P AL A+ LI+QVDRKLV
Sbjct: 443 DKLGASAVNLVGGDKPADVYSGIAARVLQIMKRDALKDPATDPHALHARRLINQVDRKLV 502
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
KQTVMTSVYGVT++GAR+QIKRRL+E+ + DD +LFAA+CYAAK +
Sbjct: 503 KQTVMTSVYGVTYIGARDQIKRRLKERCAVEDDSELFAASCYAAKTT 549
>gi|18642494|dbj|BAB84520.2| single-subunit RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/683 (52%), Positives = 475/683 (69%), Gaps = 22/683 (3%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+KRK L +RQVK ETEAW++ EY+EL +M K LAPNLP + L L WF PL +
Sbjct: 206 RKRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDG 265
Query: 231 IEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
I EQ+ + ++ ++ Y P++ LPAD +AVI MH++MGL+M E CV+V+ AAV
Sbjct: 266 ILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAV 325
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKK-------IIADTEEVLSKEKELLRKRVNSLIKSK 340
IG A+EQE+RI + K K + +A+ EE+ + K L+ + K K
Sbjct: 326 VIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADLKSKKVVRDKVK 385
Query: 341 RVMEAQKL------LKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
++++ KL LK+ T +PW KLGSRL+EL++ET++V+ P ++
Sbjct: 386 KLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGEL 445
Query: 394 RPAFRHRFKT-ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
RPAF+H+FK +L+ Q + YGV+ECD LVL +D+S KHM++PY+PMLV P WKG
Sbjct: 446 RPAFQHKFKNHVLR---QNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKG 502
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+N+GGYL+L S +MRT G+++Q+ A+ MK V EAL+ LG T WRVNK+VL V+E
Sbjct: 503 FNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVE 562
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
+W +GG IA LV+ +DV IPE+P + D KWK +V +AK+ N ERHS RCDTELKL
Sbjct: 563 KLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKL 622
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
VA+++ DEE FYYPHNLDFRGRAYPMHPHLNHL +D+CRG+L FA+G+PLG SGLRW+K
Sbjct: 623 GVAKKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIK 682
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
I LANL+ G V K+S D R AF E+ + EI DSAE P++GSR WL AEDPFQ LAACI+L
Sbjct: 683 IQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDL 742
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+AL S +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNL+AG+KPADVYS IA
Sbjct: 743 RDALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAE 802
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV IM++D+ K+P A A++L Q+DRKLVKQTVMTSVYGVTF+GAR QI RL+
Sbjct: 803 RVKIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLK 862
Query: 813 EKGHI-TDDRQLFAAACYAAKVS 834
E+ I D + AACYAAKV+
Sbjct: 863 ERSPIAVDPVDTYRAACYAAKVT 885
>gi|168052876|ref|XP_001778865.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669734|gb|EDQ56315.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1065
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/683 (52%), Positives = 474/683 (69%), Gaps = 22/683 (3%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+KRK L +RQVK ETEAW++ EY+EL +M K LAPNLP + L L WF PL +
Sbjct: 206 RKRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDG 265
Query: 231 IEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
I EQ+ + ++ ++ Y P++ LPAD +AVI MH++MGL+M E CV+V+ AAV
Sbjct: 266 ILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAV 325
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKK-------IIADTEEVLSKEKELLRKRVNSLIKSK 340
IG A+EQE+RI + K K + +A+ EE+ + K L+ + K K
Sbjct: 326 VIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADLKSKKVVRDKVK 385
Query: 341 RVMEAQKL------LKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
++++ KL LK+ T +PW KLGSRL+EL++ET++V+ P ++
Sbjct: 386 KLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGEL 445
Query: 394 RPAFRHRFKT-ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
RPAF+H+FK +L+ Q + YGV+ECD LVL +D+S KHM++PY+PMLV P WKG
Sbjct: 446 RPAFQHKFKNHVLR---QNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKG 502
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+N+GGYL+L S +MRT G+++Q+ A+ MK V EAL+ LG T WRVNK+VL V+E
Sbjct: 503 FNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVE 562
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
+W +GG IA LV+ +DV IPE+P + D KWK +V +AK+ N ERHS RCDTELKL
Sbjct: 563 KLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKL 622
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
VA ++ DEE FYYPHNLDFRGRAYPMHPHLNHL +D+CRG+L FA+G+PLG SGLRW+K
Sbjct: 623 GVANKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIK 682
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
I LANL+ G V K+S D R AF E+ + EI DSAE P++GSR WL AEDPFQ LAACI+L
Sbjct: 683 IQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDL 742
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+AL S +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNL+AG+KPADVYS IA
Sbjct: 743 RDALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAE 802
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV IM++D+ K+P A A++L Q+DRKLVKQTVMTSVYGVTF+GAR QI RL+
Sbjct: 803 RVKIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLK 862
Query: 813 EKGHI-TDDRQLFAAACYAAKVS 834
E+ I D + AACYAAKV+
Sbjct: 863 ERSPIAVDPVDTYRAACYAAKVT 885
>gi|18077583|emb|CAC95164.1| RNA polymerase [Physcomitrella patens]
Length = 1065
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/683 (52%), Positives = 474/683 (69%), Gaps = 22/683 (3%)
Query: 171 KKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEA 230
+KRK L +RQVK ETEAW++ EY+EL +M K LAPNLP + L L WF PL +
Sbjct: 206 RKRKARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDG 265
Query: 231 IEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
I EQ+ + ++ ++ Y P++ LPAD +AVI MH++MGL+M E CV+V+ AAV
Sbjct: 266 ILEEQRAYGNREHREHRSMYGPYMCQLPADMLAVITMHRLMGLLMCDQEHGCVKVIHAAV 325
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKK-------IIADTEEVLSKEKELLRKRVNSLIKSK 340
IG A+EQE+RI + K K + +A+ EE+ + K L+ + K K
Sbjct: 326 VIGEAVEQEVRIFQLMNSQKKSKDAEGNTNSLGDVANNEELEATRKADLKSKKVVRDKVK 385
Query: 341 RVMEAQKL------LKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
++++ KL LK+ T +PW KLGSRL+EL++ET++V+ P ++
Sbjct: 386 KLVKQNKLRRVDSILKHASTDEPWSTVIHVKLGSRLLELMLETSFVRAPACQDGDDFGEL 445
Query: 394 RPAFRHRFKT-ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKG 452
RPAF+H+FK +L+ Q + YGV+ECD LVL +D+S KHM++PY+PMLV P WKG
Sbjct: 446 RPAFQHKFKNHVLR---QNVNRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKG 502
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+N+GGYL+L S +MRT G+++Q+ A+ MK V EAL+ LG T WRVNK+VL V+E
Sbjct: 503 FNEGGYLYLKSSIMRTQGAKEQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVE 562
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
+W +GG IA LV+ +DV IPE+P + D KWK +V +AK+ N ERHS RCDTELKL
Sbjct: 563 KLWKAGGGIADLVEADDVPIPERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKL 622
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
VA ++ DEE FYYPHNLDFRGRAYPMHPHLNHL +D+CRG+L FA+G+PLG SGLRW+K
Sbjct: 623 GVADKLIDEEAFYYPHNLDFRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIK 682
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
I LANL+ G V K+S D R AF E+ + EI DSAE P++GSR WL AEDPFQ LAACI+L
Sbjct: 683 IQLANLYGGSVGKMSFDDRAAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDL 742
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+AL S +P + +SHLP+HQDGSCNGLQHYAALGR+ + A +VNL+AG+KPADVYS IA
Sbjct: 743 RDALASGNPETFVSHLPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAE 802
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV IM++D+ K+P A A++L Q+DRKLVKQTVMTSVYGVTF+GAR QI RL+
Sbjct: 803 RVEIIMEKDALKNPLTSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLK 862
Query: 813 EKGHI-TDDRQLFAAACYAAKVS 834
E+ I D + AACYAAKV+
Sbjct: 863 ERSPIAVDPVDTYRAACYAAKVT 885
>gi|168052257|ref|XP_001778567.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670021|gb|EDQ56597.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 861
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/681 (50%), Positives = 470/681 (69%), Gaps = 16/681 (2%)
Query: 168 REMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPL 227
R+ K LR+RQ+ ETEAW +Y+E A+M K+LAPNLP + L LGW+ PL
Sbjct: 3 RKKGHNKLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPL 62
Query: 228 SEAIEREQKM---QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
+AI EQ+ + ++A+Y P + LP ++AVI MH ++ LVM+ + V+V+Q
Sbjct: 63 RDAIAEEQRAFSELEFRGERASYGPFLCQLPPSQLAVITMHCLLALVMSNEKMGYVKVIQ 122
Query: 285 AAVHIGMAIEQEIRIHSFL---EKTKNYKRKKIIAD--TEEVLSKEKEL-----LRKRVN 334
AA+HIG A+EQE+ I K KRK I D + S + EL L +
Sbjct: 123 AALHIGEAVEQEVLIRKLRIGKAKKNETKRKGITKDDGISTIESGKVELTTSPELPTQAT 182
Query: 335 SLIKSKRVMEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
+ K +++ + +L K + PWG AK+GSRL+EL +ETA ++ P + +
Sbjct: 183 GMQKLRKLRLWRSMLQKASGSDPWGPTIYAKVGSRLLELFMETAVIRVPSDDP-HVDASF 241
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGY 453
P F+H K + G+ +T +GVVEC+PLVLE +D+S K++++PY+PM+ PK WKG+
Sbjct: 242 EPVFQHTNKKFVCTNGRSSTG-FGVVECNPLVLEQIDKSVKYVIMPYMPMVSKPKHWKGF 300
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+ GGYLFL S +MRTHGS++Q + K+ MKK+F+AL+ LG T WRVNK VL+VLE
Sbjct: 301 HDGGYLFLKSSIMRTHGSKEQYDIFKNTPRENMKKIFQALNVLGETGWRVNKPVLAVLEQ 360
Query: 514 IWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
IW GG +A LVD DVL+P KP + ++ E++ W+ V K+ N ER+S RCD ELKL+
Sbjct: 361 IWKEGGRLANLVDAEDVLVPAKPETNNLDELKSWRREVGIVKRTNYERYSLRCDVELKLA 420
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
VAR++ +E+ FY PHNLDFRGRAYPMHP+LNHL SD+CRGVLEFA+GRPLG++GLRWLKI
Sbjct: 421 VARKLVNEDAFYLPHNLDFRGRAYPMHPNLNHLGSDMCRGVLEFAKGRPLGETGLRWLKI 480
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL+ G + KLS D R+A V+ H+ ++FDSAENP+NG+RWWL AEDPFQ LAACI++
Sbjct: 481 HLANLYGGSISKLSFDARVAHVDTHMDDVFDSAENPMNGNRWWLKAEDPFQFLAACIDIR 540
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A+KS +P + S LP+HQDGSCNGLQHYAALGR+ + A VNL+AG+ PADVYS IA R
Sbjct: 541 NAVKSGNPKTYNSFLPVHQDGSCNGLQHYAALGRDRIGAGTVNLLAGDVPADVYSAIADR 600
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
VH +++ + K+P A +A++L+ Q+DRKLVKQT+MTSVYGVTFVGAR QI RL+E
Sbjct: 601 VHRTIEKAALKNPEASKHAAIARVLLGQIDRKLVKQTIMTSVYGVTFVGARIQILNRLKE 660
Query: 814 KGHITDDRQLFAAACYAAKVS 834
+G I D +LF A+ YAAKV+
Sbjct: 661 RGIIQDGGELFKASVYAAKVT 681
>gi|188529544|emb|CAP70041.1| RNA polymerase [Selaginella moellendorffii]
Length = 1002
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/660 (49%), Positives = 452/660 (68%), Gaps = 17/660 (2%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM--- 237
RQ K E +AW+ V EY+++ +M K+LAPNLP K L + WF P+ + I +E K
Sbjct: 175 RQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEK 234
Query: 238 QRTKKQKAAYAPHIEL--LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQ 295
+ + ++ Y P ++ L AD +AVI MH+++ L+M + C+++ AV IG A+EQ
Sbjct: 235 EEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDAVEQ 294
Query: 296 EIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EET 354
EI+I L+K K + + K++ L K ++I+ R +++LK+ + +
Sbjct: 295 EIKIRRALKKRKPKELAEEAEPPTPEEEKKEYLKDKLRRAIIERPR--NVKEILKSLDPS 352
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW QAKLG RL+++++ +++ PV+ ++RPAFRH +LK P +
Sbjct: 353 QPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRH----VLKVPKGGLLR 408
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
YG + CDP + +D SAK +++PY+PML+PP+ WKGY+ G YL L S +MRTHGS++Q
Sbjct: 409 SYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVIMRTHGSKQQ 468
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE 534
+EA+++ +++VF ALDTLG+ W++NK+V V+E +W +GG I GLVDR DV +P
Sbjct: 469 REAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVIEKLWSAGGGIGGLVDRKDVPLPP 528
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
KP +ED E++ W+ K K+ N ER+SQRCD ELKL+VAR +KDEE FYYPHNLDFRG
Sbjct: 529 KPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELKLAVARSLKDEECFYYPHNLDFRG 588
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYPMH HLNHL SDVCRG+L FA+GRPLG +GLRWLKIH+AN+F+ G +KL DGR+AF
Sbjct: 589 RAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWLKIHIANVFANGADKLPFDGRVAF 648
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
E++L + SA P+ +RWWL AEDPFQCLAACI+L A+ S +P ISHLP+HQDG
Sbjct: 649 AESNLEHVVASANQPLK-NRWWLKAEDPFQCLAACIDLRNAMHSPNPEYYISHLPVHQDG 707
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ A AVNL+ + PADVYS IA RV +++ D+ KDP+ A+
Sbjct: 708 SCNGLQHYAALGRDKTGARAVNLIGADYPADVYSGIAARVRTLVEEDARKDPA----AVY 763
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
AK+L+ VDRKLVKQTVMTSVYGVT+VGAR QI RL +KG I D+ L+ CYAAKV+
Sbjct: 764 AKLLVGHVDRKLVKQTVMTSVYGVTYVGARNQITNRLRDKGFILDEPTLYRTGCYAAKVT 823
>gi|302766019|ref|XP_002966430.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
gi|302792739|ref|XP_002978135.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300154156|gb|EFJ20792.1| hypothetical protein SELMODRAFT_108034 [Selaginella moellendorffii]
gi|300165850|gb|EFJ32457.1| hypothetical protein SELMODRAFT_85910 [Selaginella moellendorffii]
Length = 831
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/663 (49%), Positives = 453/663 (68%), Gaps = 17/663 (2%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L RQ K E +AW+ V EY+++ +M K+LAPNLP K L + WF P+ + I +E K
Sbjct: 1 LFNRQQKLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKA 60
Query: 238 ---QRTKKQKAAYAPHIEL--LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
+ + ++ Y P ++ L AD +AVI MH+++ L+M + C+++ AV IG A
Sbjct: 61 IEKEEPGEDRSHYGPLLKGAGLTADVLAVITMHRLVALMMQDVDSGCIRLANTAVLIGDA 120
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
+EQEI+I L+K K + + K++ L K ++I+ R +++LK+
Sbjct: 121 VEQEIKIRRALKKRKPKELAEEAEPPTPEEEKKEYLKDKLRRAIIERPR--NVKEILKSL 178
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+ ++PW QAKLG RL+++++ +++ PV+ ++RPAFRH +LK P
Sbjct: 179 DPSQPWPSFIQAKLGCRLIDIMMSNSHINVPVSDCPEDGTEIRPAFRH----VLKVPKGG 234
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+ YG + CDP + +D SAK +++PY+PML+PP+ WKGY+ G YL L S +MRTHGS
Sbjct: 235 LLRSYGAIVCDPHLRGRIDDSAKFIVMPYMPMLIPPRAWKGYHNGAYLHLRSVIMRTHGS 294
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
++Q+EA+++ +++VF ALDTLG+ W++NK+V V+E +W +GG I GLVDR DV
Sbjct: 295 KQQREAVRNTPRAQLQQVFRALDTLGAASWKINKEVFEVIEKLWSAGGGIGGLVDRKDVP 354
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+P KP +ED E++ W+ K K+ N ER+SQRCD ELKL+VAR +KDEE FYYPHNLD
Sbjct: 355 LPPKPNTEDEAEMRSWRKVFYKGKRTNSERNSQRCDLELKLAVARSLKDEECFYYPHNLD 414
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYPMH HLNHL SDVCRG+L FA+GRPLG +GLRWLKIH+AN+F+ G +KL DGR
Sbjct: 415 FRGRAYPMHAHLNHLGSDVCRGMLLFAKGRPLGPTGLRWLKIHIANVFANGADKLPFDGR 474
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+AF E++L + SA P+ +RWWL AEDPFQCLAACI+L A+ S +P ISHLP+H
Sbjct: 475 VAFAESNLEHVVASANQPLK-NRWWLKAEDPFQCLAACIDLRNAMHSPNPEYYISHLPVH 533
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ A AVNL+ + PADVYS IA RV +++ D+ KDP+
Sbjct: 534 QDGSCNGLQHYAALGRDKTGARAVNLIGADYPADVYSGIAARVRTLVEEDARKDPA---- 589
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
A+ AK+L+ VDRKLVKQTVMTSVYGVT+VGAR QI RL +KG I D+ L+ CYAA
Sbjct: 590 AVYAKLLVGHVDRKLVKQTVMTSVYGVTYVGARNQITNRLRDKGFILDEPTLYRTGCYAA 649
Query: 832 KVS 834
KV+
Sbjct: 650 KVT 652
>gi|125562883|gb|EAZ08263.1| hypothetical protein OsI_30516 [Oryza sativa Indica Group]
Length = 845
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/477 (63%), Positives = 370/477 (77%), Gaps = 43/477 (9%)
Query: 358 GRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
G + ++GSRL+EL+IETAY+Q P + + PPD+RPAF H +T+ +
Sbjct: 234 GEAIEHEVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVARE---------- 283
Query: 418 VVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEA 477
+ Y+KG +LFLPSYVMRTHG+R+Q++A
Sbjct: 284 ---------------------------------QQYDKGAHLFLPSYVMRTHGARQQRDA 310
Query: 478 LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL 537
++ M+ VFEAL+TLGSTKWRVNK+VLS+++ IW SGG +A LVDR DV +PEKP
Sbjct: 311 VRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPD 370
Query: 538 SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
+ED +++KW+W++R AKK N ERHSQRCD ELKL+VAR+MKDE+GFYYPHNLDFRGRAY
Sbjct: 371 TEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAY 430
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
PMHP+LNHL SD+CRGVLEFAEGRPLGKSGLRWLKIHLANL++GGV+KLS+DGR+AF EN
Sbjct: 431 PMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTEN 490
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
HL +IFDSA+ P+ G RWWL AEDPFQCLA CINL+EAL+S SP ++ISH+P+HQDGSCN
Sbjct: 491 HLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCN 550
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
GLQHYAALGR+ L A AVNLVAGEKPADVY+ IA RV EIMK D+ KDP+ P A A++
Sbjct: 551 GLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARL 610
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
L+DQVDRKLVKQTVMTSVYGVT+VGAREQIKRRL+E+ I DD +LF+A+CYAAKV+
Sbjct: 611 LLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVT 667
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/124 (52%), Positives = 92/124 (74%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQ++ ETEAWE+ +EY+EL A M +++LAPNLP++K LFLGWF PL + I
Sbjct: 118 KYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIA 177
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ + +A++A + +LPAD +AVI MHK+MGL+M G D V+V+QAA IG AI
Sbjct: 178 EQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAI 237
Query: 294 EQEI 297
E E+
Sbjct: 238 EHEV 241
>gi|21425677|emb|CAC95026.1| plastid RNA polymerase [Nicotiana tabacum]
Length = 557
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/377 (80%), Positives = 346/377 (91%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KGGYLFLPSY+MRTHGSR+QQ+A++ V M++V+EALDTLGSTKWRVNK++L+V+E
Sbjct: 1 YDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVE 60
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
SIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE HSQRCDTELKL
Sbjct: 61 SIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKL 120
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
SVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWLK
Sbjct: 121 SVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IHLA+L++GGVEKL +D RLAFVENH+++I DSA NP+NG+RWWL AEDPFQCLAACINL
Sbjct: 181 IHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINL 240
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
SEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAGEKPADVY+EIA+
Sbjct: 241 SEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIAL 300
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VGAREQIKRRLE
Sbjct: 301 RVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 360
Query: 813 EKGHITDDRQLFAAACY 829
EKG I DDR LF A+CY
Sbjct: 361 EKGLIDDDRLLFTASCY 377
>gi|255585835|ref|XP_002533595.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
gi|223526524|gb|EEF28786.1| DNA-directed RNA polymerase 2B, chloroplast/mitochondrial
precursor, putative [Ricinus communis]
Length = 589
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 285/382 (74%), Positives = 335/382 (87%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KG +LFLPSYVMRTHG+R+Q+EA+K ++ VFEALDTLGSTKWR+NK++L V++
Sbjct: 30 YDKGAHLFLPSYVMRTHGARQQREAVKITPREQLQPVFEALDTLGSTKWRINKRILGVVD 89
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
IW SGG + LVDRNDV +PEKP +ED V+KWKW +R AKK N+ERHSQRCDTELKL
Sbjct: 90 RIWNSGGRLGDLVDRNDVPLPEKPETEDEALVRKWKWKLRAAKKENRERHSQRCDTELKL 149
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+VAR+MKDEEGFYYPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLK
Sbjct: 150 AVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 209
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IHLANLF+GGV+KLS+DGR+AF ENHL +IFDSA+ P+ G RWWL AEDPFQCLA CI+L
Sbjct: 210 IHLANLFAGGVDKLSYDGRIAFTENHLDDIFDSADRPLEGKRWWLNAEDPFQCLAVCIDL 269
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+EAL+SSSP + ISH+PIHQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IAV
Sbjct: 270 TEALRSSSPETFISHVPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAV 329
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RV +IM++D+ KDP P AL AKILI QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+
Sbjct: 330 RVLDIMRKDAQKDPKVFPDALHAKILISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLK 389
Query: 813 EKGHITDDRQLFAAACYAAKVS 834
E+G I DD ++F A+CYAAKV+
Sbjct: 390 ERGFIADDTEIFVASCYAAKVT 411
>gi|149940228|emb|CAJ13818.1| DNA-dependent RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 383
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 284/383 (74%), Positives = 334/383 (87%), Gaps = 24/383 (6%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+ GG+ FLPSY+MRTHGSR+QQ+A++ + M+K++EALDTLGSTKWRVNK++L+V+E
Sbjct: 1 YDCGGHFFLPSYLMRTHGSRQQQDAVEDAPPSQMQKIYEALDTLGSTKWRVNKRLLNVVE 60
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
SIW +GG+IAGLV+R DV IP+ SED +E+++W+WSVRKAKK+NQE HSQRCD ELKL
Sbjct: 61 SIWAAGGDIAGLVNRQDVSIPDLN-SEDSSEIKEWRWSVRKAKKMNQELHSQRCDIELKL 119
Query: 573 SV-ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
SV ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRPLGKSGLRWL
Sbjct: 120 SVVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 179
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
+IHLANL+ GVEKLS+DGRLAFVE+H+ EI DSA+NP+ G+RWWLTAEDPFQCLAACIN
Sbjct: 180 RIHLANLYGSGVEKLSYDGRLAFVESHISEIIDSADNPLGGNRWWLTAEDPFQCLAACIN 239
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L+E LKSSSPH+VISHLP+HQDGSCNGLQHYAALGR+T+EAAAVNLVAGEKPADVYSEIA
Sbjct: 240 LAETLKSSSPHTVISHLPVHQDGSCNGLQHYAALGRDTVEAAAVNLVAGEKPADVYSEIA 299
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
R +I+ QV+RKLVKQTVMTSVYGVTFVGAREQIKRRL
Sbjct: 300 TRYADII----------------------QVNRKLVKQTVMTSVYGVTFVGAREQIKRRL 337
Query: 812 EEKGHITDDRQLFAAACYAAKVS 834
+EKGHI+DD+ LF+A+CYAA+V+
Sbjct: 338 QEKGHISDDQLLFSASCYAARVT 360
>gi|357502599|ref|XP_003621588.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355496603|gb|AES77806.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 895
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 280/384 (72%), Positives = 326/384 (84%)
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ ++KGGYLFLPSYVMRTHG ++Q+EA+K V ++ VFEALDTLG+TKWRVN +VLSV
Sbjct: 332 QNFDKGGYLFLPSYVMRTHGVKQQREAVKKVPRKQLEPVFEALDTLGNTKWRVNNKVLSV 391
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
++ IW GG +AGLVDRNDV IPE+ S+D E +KWKW V+ KK N+ER+S RCDTEL
Sbjct: 392 VDRIWAGGGRLAGLVDRNDVEIPEELESDDEAEKKKWKWKVKSVKKENRERYSLRCDTEL 451
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KL+VAR+MKDEE FYYPHNLDFRGRAYPMHPHLNHL SDVCRG+LEFA+GRPLGKSGL W
Sbjct: 452 KLAVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDVCRGILEFADGRPLGKSGLHW 511
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHLANL+ GGV+KLS++GR+ FVENHL EIFDSAE P+ G RWWL AEDPFQ LAAC+
Sbjct: 512 LKIHLANLYGGGVDKLSNEGRITFVENHLDEIFDSAEQPMEGRRWWLNAEDPFQFLAACM 571
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L+EALK S+P S ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS I
Sbjct: 572 TLTEALKISTPESFISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGI 631
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A RV IMK D+ KDP +A AKIL++QVDRKLVKQTVMTSVYGVT++GAREQIKRR
Sbjct: 632 AARVLAIMKIDAQKDPETFSEARHAKILVNQVDRKLVKQTVMTSVYGVTYIGAREQIKRR 691
Query: 811 LEEKGHITDDRQLFAAACYAAKVS 834
L+E+ I DD +LF AACYAAKV+
Sbjct: 692 LKERDAIADDSELFGAACYAAKVT 715
>gi|224127290|ref|XP_002329241.1| predicted protein [Populus trichocarpa]
gi|222870695|gb|EEF07826.1| predicted protein [Populus trichocarpa]
Length = 543
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/346 (71%), Positives = 302/346 (87%), Gaps = 1/346 (0%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
+F+ALDTLG+T+WRVNK+VLSV++ IW +GG +A LVD +DV +PEKP +ED ++KWK
Sbjct: 21 IFQALDTLGNTRWRVNKRVLSVVDRIWSNGGCLADLVDHSDVPLPEKPETEDEALLKKWK 80
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
W +R KK N+ERH+QRCD ELKL+VAR+MKDEEGFYYPHN+DFRGRAYPMHP+LNHL S
Sbjct: 81 WKLRGVKKENKERHAQRCDIELKLAVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGS 140
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+CRG+LEFAEGRPLGKSGLRWLKIH+ANLF+GGV+KLS++GR+AF ENHL +IFD +
Sbjct: 141 DLCRGILEFAEGRPLGKSGLRWLKIHIANLFAGGVDKLSYEGRIAFTENHLDDIFDCTDK 200
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P++G RWWL AEDPFQ LA CINL+EAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+
Sbjct: 201 PLDGKRWWLHAEDPFQFLAVCINLTEALRSSSPETYISHIPVHQDGSCNGLQHYAALGRD 260
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
L AAAVNLVAGEKPADVYS IA RV +IM+RD+ KDP P AL AK LI+QVDRKLVK
Sbjct: 261 KLGAAAVNLVAGEKPADVYSGIAARVLDIMRRDAQKDPDVFPDALRAKELINQVDRKLVK 320
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
QTVMTSVYGVT++GAR+QIKRRL+E+G IT++ +F +CYAAKV+
Sbjct: 321 QTVMTSVYGVTYIGARDQIKRRLKERG-ITEESDIFGCSCYAAKVT 365
>gi|224127286|ref|XP_002329240.1| predicted protein [Populus trichocarpa]
gi|222870694|gb|EEF07825.1| predicted protein [Populus trichocarpa]
Length = 528
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 218/306 (71%), Positives = 265/306 (86%)
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
Y+KG +LFLPSYVMR HG+++Q+EA+K ++ VFEALDTLG+T+WRVNK+VLSV++
Sbjct: 1 YDKGAHLFLPSYVMRIHGAKQQREAVKRAPRKQLQAVFEALDTLGNTRWRVNKRVLSVVD 60
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
IW +GG +A LVD +DV +PEKP +ED ++KWKW +R KK N+ERH+QRCD ELKL
Sbjct: 61 RIWSNGGCLADLVDHSDVPLPEKPETEDEALLKKWKWKLRGVKKENKERHAQRCDIELKL 120
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+VAR+MKDEEGFYYPHN+DFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLK
Sbjct: 121 AVARKMKDEEGFYYPHNIDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLK 180
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH+ANLF+GGV+KLS++GR+AF ENHL +IFDSA+ P++G RWWL AEDPFQ LA CINL
Sbjct: 181 IHIANLFAGGVDKLSYEGRIAFTENHLDDIFDSADKPLDGKRWWLHAEDPFQFLAVCINL 240
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+EAL+SSSP + ISH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA
Sbjct: 241 TEALRSSSPETYISHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAA 300
Query: 753 RVHEIM 758
R+ M
Sbjct: 301 RLFNYM 306
>gi|145350935|ref|XP_001419848.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580080|gb|ABO98141.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 922
Score = 434 bits (1116), Expect = e-118, Method: Compositional matrix adjust.
Identities = 261/692 (37%), Positives = 379/692 (54%), Gaps = 55/692 (7%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
R+Q + E A ER V YKEL K + LP ++ L ++ PL EA+ EQ+ R
Sbjct: 63 RKQREAENLAVEREVMRYKELARKTFAAGIGAQLPVVQKLLASFYVPLVEALTEEQEKIR 122
Query: 240 TKK---QKAAYAPHIELLPADKVAVIVMHKMMGLVMAG--HEDRCVQVVQAAVHIGMAIE 294
+ Y ++ LL DK+AV+ +H + +M G + + + A +G A++
Sbjct: 123 GNVPGVDRRVYGHYLGLLEPDKLAVLTLHATLSTLMKGDGRNNGAAKFISVADQVGSAVQ 182
Query: 295 QEI---RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351
E+ R+ S + K R+ + +TE + + + R+N + + ++ + + K+
Sbjct: 183 AEVNLERMRSAEKAAKEAFRRSRLVNTEGNVKEIDDAAEHRINLALDTSKMNTIKSVSKH 242
Query: 352 E----ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
E WGR+ + K+G+ L+ L+ TA + P + PAF H +K
Sbjct: 243 ARQALENAEWGREIRLKIGTVLLTALMNTAKIGVPDEKGELL---TLPAFYHDYKE---- 295
Query: 408 PGQKTTKRYGVVECDPLVL-----EGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLF 460
YG++ + E + R+A L+P + PM++PP+ W+ YNKGGYL
Sbjct: 296 ------AGYGMLHWHDSIYRFINTETMTRAA---LVPVRHFPMVIPPRYWERYNKGGYLR 346
Query: 461 LPSYVMRTHGS-------------RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
+ MR S K +EA S + V +AL+ LG T W++N V
Sbjct: 347 ADNLCMRGKYSNEGPSRAQIAALEEKAREADASGEPVQYQPVLDALNALGQTAWQINTDV 406
Query: 508 LSVLESIWVSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQERHSQR 565
L ++E +W GG +A + R ++ +P P EV + SVRK KK N E HSQR
Sbjct: 407 LPIVEEVWARGGGVAEVPLRAELQLPRWPGGGLPGKGEVIDFLQSVRKTKKSNMELHSQR 466
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
CD +KL VAR MK+E Y+PHNLDFRGRAY MH HLNH+ SD+CRG+L F E +PLG+
Sbjct: 467 CDFLIKLQVAREMKNEPNIYFPHNLDFRGRAYTMHVHLNHIGSDLCRGLLRFNEKKPLGE 526
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRW+ I A LF G +KL D R+ F+++ + ++ SA++P+ WW AE+P+QC
Sbjct: 527 RGLRWMHIQCATLFGNGADKLPMDERVQFIKDRIEDVRASAQDPLAKDAWWQEAEEPWQC 586
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LA CI L +AL+ S P +S+LP+HQDGSCNGLQHYAALGR+ AVNLV ++ AD
Sbjct: 587 LATCIELDKALELSDPTQFMSNLPVHQDGSCNGLQHYAALGRDLHGGEAVNLVPADRGAD 646
Query: 746 VYSEIAVRVHEIMKRD----SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
VY+ IA + I+ D ++D A LA L +DRKLVKQTVMTSVYGVTF+
Sbjct: 647 VYTGIANVLKRIVAEDIKLIDSEDEEDVNNAKLAMSLAQHIDRKLVKQTVMTSVYGVTFI 706
Query: 802 GAREQIKRRLEEKGHITDDRQL-FAAACYAAK 832
GAR QI RL E+ + D+ L + + YAAK
Sbjct: 707 GARAQIYSRLREREAMEDNELLRYRVSNYAAK 738
>gi|290976388|ref|XP_002670922.1| predicted protein [Naegleria gruberi]
gi|284084486|gb|EFC38178.1| predicted protein [Naegleria gruberi]
Length = 933
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/641 (40%), Positives = 364/641 (56%), Gaps = 68/641 (10%)
Query: 213 LPHIKGLFLGWFGPLSEAIEREQK----------------MQRTKKQKAAYAPHIELLPA 256
LP K + L W+ PL++ I +Q T + A ++ + A
Sbjct: 162 LPPAKKIMLEWYEPLTKIIREKQDEVNFSCSKKKSSSTNTTTTTSQDNFAIPLYLTSISA 221
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
+K+A+I +H+++ + E V + IG AI+ EI + L++T +K
Sbjct: 222 EKLAIITLHELLASCLK--ERGGSPVSSISYQIGDAIQAEINVEK-LKRTNYFK------ 272
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
L + +++ +N + K LK E + ++ +LGS L++L + T
Sbjct: 273 -----LIIKNQMIYHNINKISK----------LKLNEYVTFTKEELVQLGSYLIQLALST 317
Query: 377 AYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP--LVLEGLDRSAK 434
A+V P +P + PAF HR T + +K GVVE D L L G + A+
Sbjct: 318 AHV-----PLISNPKETVPAFIHRNIT-------RNSKIIGVVEPDDNLLHLIGREHVAQ 365
Query: 435 HMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 493
+L P ++PMLVPP W GGY+ L +MRT GS Q LKS N + L
Sbjct: 366 EILYPNHLPMLVPPNPWTSSTAGGYIALKVLIMRTRGSHLQAYTLKSAELN---DLLSGL 422
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+TL T+WR+N V + +W SGG + L R D +PE+P ++D +KWK +V K
Sbjct: 423 NTLNETRWRINPTVYETVLKVWNSGGGLGELPSRFDDTLPEEPETDDPEIKKKWKRTVEK 482
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
K N+ HS RCD LKL VA KD FY+PHN+DFRGRAYP+ PHLNHL +D+ RG
Sbjct: 483 IKTHNRNLHSLRCDMLLKLKVAEDFKDNT-FYFPHNIDFRGRAYPIPPHLNHLGADINRG 541
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L F +G P+GK G+ WLKIHLANL+ G +KL D R+ FV+ ++ EI DSA+ P+ G+
Sbjct: 542 LLTFEKGMPIGKRGIFWLKIHLANLY--GKDKLPFDERVQFVDEYINEIIDSADQPLEGN 599
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
RWWL +E+P+Q LAAC+ L+E L+S +P +SHLPI DGSCNGLQHYAALGR+ L A
Sbjct: 600 RWWLKSENPWQTLAACVELAECLRSPNPEEFLSHLPIQMDGSCNGLQHYAALGRDNLGAL 659
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VNL+ KP DVY V V E++K+ +D + LAK+L V R +KQTVMT
Sbjct: 660 HVNLLPTSKPMDVY----VGVLEVVKKHIERDMKAGNK--LAKLLHGNVYRSTIKQTVMT 713
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
SVYGVTFVGAREQI++RL+EK + +D +FA A Y A ++
Sbjct: 714 SVYGVTFVGAREQIQKRLKEKKEVPED-DVFACASYLASIT 753
>gi|255080246|ref|XP_002503703.1| predicted protein [Micromonas sp. RCC299]
gi|226518970|gb|ACO64961.1| predicted protein [Micromonas sp. RCC299]
Length = 899
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 266/711 (37%), Positives = 392/711 (55%), Gaps = 70/711 (9%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLA-PNLPHIKGLFLGWFGPLSEAIE 232
K L RQ + E A +R V+ YKE EA++ +R LP + L G+F PL+ AI
Sbjct: 23 KMRELEERQRRNEILAVDREVERYKE-EARITRRRGGGAELPLGRRLLQGFFAPLTSAIR 81
Query: 233 REQKMQRTKKQ---KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE---------DRCV 280
EQ+ R K + ++ Y P + +L DK+AVI +H ++ +M G +
Sbjct: 82 LEQEHVRLKVRGVDRSNYGPFLLMLNPDKLAVITLHTVISQLMKGEQMFGEPNEAQAGMC 141
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA-DTEEVLSKEKELLRKRVNSLIKS 339
+ V+A +G +++ E+ + ++ + K++ + + + V + ++ + + +L
Sbjct: 142 KFVRAVEMLGQSVQAEVNLARLRQRARLTKKRYLESKNGPHVHDRFMKVNMESLKTLTTV 201
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR----P 395
+ V + N+ WG T++K+G+ LV+LL+ TA ++ P PD P
Sbjct: 202 RGVARLARTALNDSD--WGGVTRSKVGAALVKLLLTTARIRVP-------GPDGELIEVP 252
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA--KHMLIP--YVPMLVPPKKWK 451
AF H + +KH RYGV+ +D A + L P Y+PM+ PP+ W
Sbjct: 253 AFYHDY---VKH----KAHRYGVISWHDAFFTFMDDEAMIRATLSPVRYMPMVTPPRPWT 305
Query: 452 GYNKGGYLFLPSYVMR----THGSRKQQ-------EALKSVTGNCMK--KVFEALDTLGS 498
+N GGYL S VMR THG K+Q ++ + G K V +AL+ LG
Sbjct: 306 RFNAGGYLRTESIVMRGHYTTHGPSKRQMLALHGEQSGAELDGRAAKFQPVLDALNVLGR 365
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE----------------DMT 542
T WR+N+ VL V+E +W +GG A + R +V P P +
Sbjct: 366 TAWRINEDVLRVMEEVWATGGGRADVPPRENVPDPTWPANPYGLRRSRGQLAATALPSRQ 425
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
+V + S+ + K+ N+E HSQRCD +KL VA+ M+DE+ Y+PHN+DFRGRAY MH H
Sbjct: 426 DVAGFIHSLNRTKQRNRELHSQRCDFLIKLQVAKEMRDEDRIYFPHNIDFRGRAYTMHVH 485
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL SD+CRG L FA+ RPLG GL WL I ANL++GGV+KL D R ++E+ ++ +
Sbjct: 486 LNHLGSDICRGALVFADARPLGNDGLDWLYIQAANLYAGGVDKLPMDERRQWIEDRVHLL 545
Query: 663 FDSAENPIN-GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
SA +P+ +WL AEDP+QCLA C + A S P + + LP+HQDGSCNGLQH
Sbjct: 546 EQSARDPLGPDGGFWLDAEDPWQCLACCFEIERARASGDPPAYMCRLPVHQDGSCNGLQH 605
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ VNL+ ++P DVY+ IA + I+ D+ K+P LA L
Sbjct: 606 YAALGRDEAGGEQVNLMPRDRPGDVYTGIANVLKRIVAEDA-KNPEDPETQALAIALAPH 664
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
VDRKLVKQTVMTSVYGVT +GAR+QI+ RL+E+G + D+ + A YAA+
Sbjct: 665 VDRKLVKQTVMTSVYGVTHIGARQQIQNRLKERGAVEDENLRYKMANYAAR 715
>gi|412990986|emb|CCO18358.1| predicted protein [Bathycoccus prasinos]
Length = 1109
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 271/767 (35%), Positives = 398/767 (51%), Gaps = 113/767 (14%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
+F R RQ + E E+ + Y+E+ +M + NLP ++ L ++ PL +ER
Sbjct: 164 EFVARRERQRRVENESVNDEIKRYREMSEQMAQVGAGANLPAVRQLLTSFYEPLMVGVER 223
Query: 234 EQKMQRTKK---QKAAYAPHIELLPADKVAVIVMHKMMGLVMAG---------------- 274
EQ M + Y P+++LL ADK+AVI +H ++ ++M G
Sbjct: 224 EQNMISEGVPGFDRRVYGPYLQLLGADKIAVISLHTIISMLMRGVEKTRGDVFRDHSREH 283
Query: 275 HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK------------------NYKRKKIIA 316
E V+ V+ A +G IE E+ + + K + +++
Sbjct: 284 GEAGSVKFVRLASSLGRVIEAEVNLSRLQTREKLLSARYRAGLINMEDIVETFNQERHAG 343
Query: 317 DTEEVLSKEKE------------------------LLRKRVNSLIKSKRVM--EAQKLLK 350
+ E + +E+E +L++ +KS R + +A+K L
Sbjct: 344 ENEMIAEREREEKIANIDREIREKNLIKESDIRSTMLQRDSTKKLKSVRAVSEQAKKALD 403
Query: 351 NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-PAFRHRFK---TILK 406
N + WG K+G+ ++ ++++ ++ P + + PAF H + +
Sbjct: 404 NAD---WGSVLHLKVGAAIIAIVLDVCKIKVPGPETAETGEKIEVPAFYHDYSLEPNAYQ 460
Query: 407 HPGQKTT--KRYGVVECDPLVLEGLDRS----AKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
QK + R G V + + A+ + + PM+VPP+ W+ YNKGGYL
Sbjct: 461 GWKQKASPNNRSGTVHWHDSFFRFVHSATLARARSAITRHKPMIVPPRPWESYNKGGYLN 520
Query: 461 LPSYVMRTHGSRK-----QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
S VMR + SR Q + L G VF AL+ LGST W +N +L V+E +W
Sbjct: 521 SNSVVMRGNYSRDGPSDGQMKLLAERVGE-YDNVFGALNVLGSTAWVINTDILEVIEQVW 579
Query: 516 VS-------GGNIAGLVDRNDVLIPEKPLSE-----------------DMTEVQKWKWSV 551
GG IA + R ++ +P P SE EV ++ +
Sbjct: 580 REKKYAGGFGGGIANIPPRAELNLPNWPSSEFRLRRERNGPLYATALPSSREVGEFMRAF 639
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
+AK+ N+E HSQRCD +KL VAR MK+EE Y+PHN+DFRGRAY MH HLNH+ SD C
Sbjct: 640 NRAKQTNRELHSQRCDFAIKLQVAREMKNEERIYFPHNVDFRGRAYTMHAHLNHIGSDFC 699
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
RG L+FA+ +PLG++GL WL I ANL+ GG +KL R+ F + +L +I SAE+P+
Sbjct: 700 RGTLKFADAKPLGENGLDWLFIQCANLYGGGADKLPLHQRVEFSKLNLEKIKKSAEDPLG 759
Query: 672 --GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
GS WW A+DP+QCLA C+ + +A+ S P + +LP+HQDGSCNGLQHYAALGR+
Sbjct: 760 PEGS-WWQDADDPWQCLATCMEIIKAINSKDPAKYMCNLPVHQDGSCNGLQHYAALGRDF 818
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD----SNKDPSKHPQALLAKILIDQVDRK 785
AVNLV ++ ADVY+ IA + +I+++D KD + LAK+LIDQVDRK
Sbjct: 819 AGGRAVNLVPADRGADVYTGIANVLRDIVQKDIENCDYKDEESVERMKLAKLLIDQVDRK 878
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
LVKQTVMTSVYGVTFVGAR QI RL+E+ + + A YAAK
Sbjct: 879 LVKQTVMTSVYGVTFVGARMQISARLKERVGFESESVRYRVAAYAAK 925
>gi|75706720|gb|ABA25911.1| putative mitochondrial T-odd phage-like single-subunit RNA
polymerase [Naegleria sp. TES-2005]
Length = 968
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 254/682 (37%), Positives = 380/682 (55%), Gaps = 74/682 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAI-EREQK 236
L +Q + ET + + + Y++ + LP K + L W+ PL++ I E++ +
Sbjct: 156 LLLKQKELETRSMDIAKERYRKDLKSATNRNQGACLPPAKKILLEWYEPLTKLIREKQDE 215
Query: 237 MQRTKKQKAAYAP---------------------HIELLPADKVAVIVMHKMMGLVMAGH 275
+ + K+K+ + H+ + A+K+A+I +H+++ +
Sbjct: 216 VNFSAKKKSTISAADSASAANTTSGAVDHFSIPLHLTSISAEKLAIITLHELLASCLRER 275
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
V + V G AI+ EI + L++T ++K L + +++ +N
Sbjct: 276 AGSAVSSLSYVV--GDAIQAEINMEK-LKRTNHFK-----------LILKNQMVYHNINK 321
Query: 336 LIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRP 395
L K LK E + ++ +LGS L++L ++TA V P +P + P
Sbjct: 322 LSK----------LKLNEYVSFSKEELIRLGSYLIQLTLDTAKV-----PLVDNPKESVP 366
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVECDP--LVLEGLDRSAKHMLIP-YVPMLVPPKKWKG 452
AF H+ + + K G++E D + L G + + +L P ++PMLVPP W
Sbjct: 367 AFIHKNVS-------RAGKVIGMIEPDENLIQLVGREHLTQEILFPNHLPMLVPPNPWTS 419
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
GGY+ L +MRT GS Q LKS + + L+TL +KW VN +V +
Sbjct: 420 SVSGGYIALKVMIMRTRGSHLQSYILKSAE---LTDLLSGLNTLNESKWIVNPKVYETVL 476
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
+W GG + L R D +PE+P ++D +KWK + K K+ N+ HS RCD LKL
Sbjct: 477 RVWNEGGGLGELPSRFDDALPEEPETDDPEVKKKWKRTCEKIKQHNRNLHSLRCDMLLKL 536
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
VA KD FY+PHN+DFRGRAYP+ PHLNHL +D+ RG+L F +G P+GK G+ WLK
Sbjct: 537 KVAEDFKDN-AFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLK 595
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IHLANL+ G +KL D R+ F++ ++ E+FDSA+ P++G+RWWL +E+P+Q LAAC+ L
Sbjct: 596 IHLANLY--GKDKLPFDERVQFIDQNMAEVFDSADVPLDGNRWWLQSENPWQTLAACVEL 653
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ L+S P IS+LPI DGSCNGLQHYAALGR+ L A VNL+ KP DVY V
Sbjct: 654 TNCLRSEKPEEYISNLPIQMDGSCNGLQHYAALGRDNLGALHVNLLPTSKPMDVY----V 709
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V E++K+ +D + LAK+L V R +KQTVMTSVYGVTFVGAREQI++RL+
Sbjct: 710 GVLEVVKKHIERDMKAGNK--LAKLLHGNVYRSTIKQTVMTSVYGVTFVGAREQIQKRLK 767
Query: 813 EKGHITDDRQLFAAACYAAKVS 834
EK + +D +FA A Y A ++
Sbjct: 768 EKKEVPED-DVFACASYLASIT 788
>gi|401883409|gb|EJT47618.1| Rpo41 [Trichosporon asahii var. asahii CBS 2479]
Length = 1321
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 249/670 (37%), Positives = 388/670 (57%), Gaps = 52/670 (7%)
Query: 190 WERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAP 249
W + EY E + + KR+ P +GP S ++ +QK+
Sbjct: 385 WYLALTEYLEQDIDDMRKRIESTKPEQLDSRATRWGPQS-GMKDDQKLL----------- 432
Query: 250 HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---IHSFLEKT 306
++ LP ++A+I + ++M ++ +G + +++++ + +G AIE E R I S +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDGMKLLRGVMGVGRAIEAEYRADMIRSIAGEK 492
Query: 307 KNYKRKKIIADTEE-----VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-------T 354
+K I T++ V S KE+ R+R +S AQ + E T
Sbjct: 493 SRLWQKVIDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLRAVWT 552
Query: 355 KPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKT 412
PW Q +G+ LVE LI+TA V+H +P + +PAF H F+ +
Sbjct: 553 PPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSFEYV-------R 605
Query: 413 TKRYGVVECDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
++ GV++ +P+V + L + S + ++ P ++PMLVPP WK +N+G YL +P+ +MR
Sbjct: 606 GRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNSWKAWNQGPYLTIPTTMMRFKD 665
Query: 471 SRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---VD 526
S +Q+ L++ + + ++ VF LD L ST WR+N+ V V+ W G IA + +
Sbjct: 666 SVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPATAE 725
Query: 527 RNDVLIPEKPLS-EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ +++IPEKP D T+ ++ ++++ ++ H++RC L +AR ++ FY
Sbjct: 726 KCEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV-FY 784
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHNLDFRGRAYP+ PHL+ + D+CRG+L F +PLG++GLRWL+IHLANL+ G +K
Sbjct: 785 IPHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GYDK 842
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S D R+ F ++H+ +IFDSA++P++G RWWL AEDP+QCLAAC L+ AL+S P
Sbjct: 843 ASFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSKFE 902
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S LP+HQDG+CNG+QHYAALG + A AVNL G++PAD+YS + V+E ++ D K
Sbjct: 903 SSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEQGDRPADIYSTVLALVNESIEADQKKG 962
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P ALL K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G ++ D
Sbjct: 963 ---VPTALLIK---NPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLRARGDMSSDDVWIT 1016
Query: 826 AACYAAKVSN 835
+A A KV N
Sbjct: 1017 SAYIAKKVLN 1026
>gi|406698149|gb|EKD01391.1| Rpo41 [Trichosporon asahii var. asahii CBS 8904]
Length = 1321
Score = 417 bits (1073), Expect = e-113, Method: Compositional matrix adjust.
Identities = 249/670 (37%), Positives = 388/670 (57%), Gaps = 52/670 (7%)
Query: 190 WERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAP 249
W + EY E + + KR+ P +GP S ++ +QK+
Sbjct: 385 WYLALTEYLEQDIDDMRKRIESTKPEQLDSRATRWGPQS-GMKDDQKLL----------- 432
Query: 250 HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---IHSFLEKT 306
++ LP ++A+I + ++M ++ +G + +++++ + +G AIE E R I S +
Sbjct: 433 YLSTLPPKRLALITILELMRMIGSGGVNDGMKLLRGVMGVGRAIEAEYRADMIRSIAGEK 492
Query: 307 KNYKRKKIIADTEE-----VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-------T 354
+K I T++ V S KE+ R+R +S AQ + E T
Sbjct: 493 SRLWQKVIDPKTQKPSRLNVESTWKEIGREREKEAKESSDGAAAQSVKAGPESDLRAVWT 552
Query: 355 KPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKT 412
PW Q +G+ LVE LI+TA V+H +P + +PAF H F+ +
Sbjct: 553 PPWSGMVQMSIGTHLVEALIKTARVVRHGTDPLTGEQVTEKQPAFAHSFEYV-------R 605
Query: 413 TKRYGVVECDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
++ GV++ +P+V + L + S + ++ P ++PMLVPP WK +N+G YL +P+ +MR
Sbjct: 606 GRKLGVIKANPVVAKRLANDSVRQVISPKHLPMLVPPNPWKAWNQGPYLTIPTTMMRFKD 665
Query: 471 SRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---VD 526
S +Q+ L++ + + ++ VF LD L ST WR+N+ V V+ W G IA + +
Sbjct: 666 SVEQKNYLEAASKSGHLEPVFHGLDVLSSTPWRINRNVFEVVLKAWNDGDAIADIPATAE 725
Query: 527 RNDVLIPEKPLS-EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ +++IPEKP D T+ ++ ++++ ++ H++RC L +AR ++ FY
Sbjct: 726 KCEIVIPEKPDDPNDPTKRYEYVQAMKQLSLQQRKNHAERCKYNYNLEIARSYINDV-FY 784
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHNLDFRGRAYP+ PHL+ + D+CRG+L F +PLG++GLRWL+IHLANL+ G +K
Sbjct: 785 IPHNLDFRGRAYPIPPHLSPVGDDLCRGLLTFGVKKPLGENGLRWLQIHLANLY--GYDK 842
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S D R+ F ++H+ +IFDSA++P++G RWWL AEDP+QCLAAC L+ AL+S P
Sbjct: 843 ASFDERVQFSKDHVEDIFDSADHPLDGKRWWLQAEDPWQCLAACFELAGALRSGDPSKFE 902
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S LP+HQDG+CNG+QHYAALG + A AVNL G++PAD+YS + V+E ++ D K
Sbjct: 903 SSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEQGDRPADIYSTVLALVNESIEADQKKG 962
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P ALL K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G ++ D
Sbjct: 963 ---VPTALLIK---NPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLRARGDMSSDDVWIT 1016
Query: 826 AACYAAKVSN 835
+A A KV N
Sbjct: 1017 SAYIAKKVLN 1026
>gi|81373966|gb|ABB71761.1| mitochondrial DNA-directed RNA polymerase [Physarum polycephalum]
Length = 997
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 243/675 (36%), Positives = 383/675 (56%), Gaps = 70/675 (10%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK 241
Q E A ++ + Y++ ++ R +L + + W+GP ++I + +
Sbjct: 178 QADLELNAIDQATEYYRKALDGILRARQGASLGPTRRIIDSWYGPFRDSINAAVRKMSAR 237
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+ +++LL +DK+ VI +H+ +G+++A E V +Q A +G A++ E+
Sbjct: 238 ASSHSLVANLKLLSSDKLPVITLHQTLGMLLANTE--GVPFMQVAFAVGRAVQAEV---- 291
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM-------EAQKLLKNEET 354
N++R K +++K+ R SL+KSK + +A+ LK +
Sbjct: 292 ------NFERMK---------AEDKQAFR----SLLKSKSGITVTLVNIKAKYTLKKHD- 331
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPA--------------DYSPPDVRPAFRHR 400
W T +LG+ L++ L+ +A ++ V+ + + AF H
Sbjct: 332 --WDSKTIVQLGAFLLKHLMLSAKIEKNVDKVLSKANNLAVSSSERQLADDEYVSAFVHY 389
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS--AKHMLIP-YVPMLVPPKKWKGYNKGG 457
+K + TT+R G+++C + + +D K +L +PM+V P W GG
Sbjct: 390 YKFYRQ---GSTTRRQGLLKCHENIFKYVDDGHVIKEVLDARLLPMVVKPVPWVSPTVGG 446
Query: 458 YLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
YL++PS +MR +++ Q S+ + VF AL+ LG T WRVN++V +++ +W
Sbjct: 447 YLYVPSVLMR---AQEHQAQYASLWNADLTTVFAALNALGETGWRVNEEVYHIVKKVWDD 503
Query: 518 GGNIAGLVDRNDVLIPEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVA 575
GG +A L R D+ P+ P D + K WK + RK +++N + +S RCDT KLSVA
Sbjct: 504 GGGLAALPTRTDITFPDPPDDLDTNDESKRTWKKTERKIRQLNNDLNSLRCDTTYKLSVA 563
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ + FY PHN+DFRGRAYP+ PHLN L SD+CRG+L F E +PLG +GLRWLKIHL
Sbjct: 564 ETLLHMD-FYLPHNVDFRGRAYPIPPHLNQLGSDMCRGLLVFKEKKPLGPTGLRWLKIHL 622
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ GV+K+ D R+ FV+ ++ ++FDSA++P++G +WW+ A+DP+QCL C L++A
Sbjct: 623 ANLY--GVDKVPFDARVNFVDKNIDKVFDSADHPLDGEQWWVGADDPWQCLGTCFELAKA 680
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+S +P +S +P+HQDGSCNGLQHYAALG + + VNLV + P DVYS +A V
Sbjct: 681 LRSPNPEEFLSCMPVHQDGSCNGLQHYAALGGDEIGGRKVNLVPSDAPQDVYSGVATVVA 740
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ + D+ + H L K+L ++DRK+VKQTVMTSVYGVT++GAR QI L +K
Sbjct: 741 KRVHEDA---IAGHE---LGKLLDGKLDRKVVKQTVMTSVYGVTYIGARLQIHNALSDKD 794
Query: 816 -HITDDRQLFAAACY 829
DD QL+ A+ Y
Sbjct: 795 IEWRDDDQLYHASAY 809
>gi|440790817|gb|ELR12085.1| DNAdependent RNA polymerase [Acanthamoeba castellanii str. Neff]
Length = 965
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 259/687 (37%), Positives = 371/687 (54%), Gaps = 82/687 (11%)
Query: 186 ETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK--MQRTKKQ 243
ET++ E+ V+ YK++ + + LA L + WF PL AI EQ + +T
Sbjct: 134 ETKSVEKAVERYKKISKSLKQLGLAFELLQGNQILGHWFEPLCAAIRAEQNAALLKTSAA 193
Query: 244 KAAYAP-----------------HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
AA +P ++ +P +K+AVI +H+ M ++ H
Sbjct: 194 DAAASPTKGKKKTQKAEDRELSAYLVTIPPEKLAVITIHETMCEILKSHHPEGAPFAALV 253
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
V +G A+E E N +R ++ ++ ++++ SLI+++ +
Sbjct: 254 VAVGRAVEYEY----------NCERLAKEGWKPQLRNRSATPTKQQICSLIRTQSRAQF- 302
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY-----SP-------PDVR 394
E WG AK+GS LV+ L+ TA + AD SP P R
Sbjct: 303 ------EDASWGAALHAKIGSLLVQQLLGTATIARKAEEADVAAAQSSPARLLSGAPRKR 356
Query: 395 PAFRHRFKTILK-----HPGQKTTKRYGVVECDPLVLEGLDRSAKH---MLIPYVPMLVP 446
PAF + + +L+ H K G + C VL ++ M Y+PMLV
Sbjct: 357 PAFVTKEEALLEPAFNHHQAMLRGKLTGFLGCHEQVLALMEHEEVQRGVMQARYMPMLVE 416
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
P+ W N+GGYL + V+R GSR Q E L+S + M KV+E L+ L ST WR+N +
Sbjct: 417 PQPWVAPNQGGYLVARTQVLRAKGSRMQTEVLRSAS---MDKVYECLNLLSSTPWRINNR 473
Query: 507 VLSVLESIWVSGGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ V+ W +GG IA L R ++ L P D+ QK+ +KAK N HS
Sbjct: 474 MHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEVKQKFDRERKKAKIANYNLHSL 533
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD VA+ +D FYYPHN+DFRGR YP+ PHLNHL D+CRG+L FAEG+PLG
Sbjct: 534 RCD------VAKECQDRT-FYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFAEGKPLG 586
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+ LK+HLAN+F G +K++ + R+ FVEN++ I DSA NP+ G RWWL A+ P+Q
Sbjct: 587 E-----LKVHLANVF--GNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLKADKPWQ 639
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAA I L A S P + +S LPIHQDGSCNGLQHYAALG + + A VNL+ E+P
Sbjct: 640 CLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYAALGGDEMGARQVNLLPSERPQ 699
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYS + E++ R D + + +A+ L+ +VDRK++KQTVMTSVYGVTF+GAR
Sbjct: 700 DVYSGVV----ELVVRRLEDDAANGVE--IAQRLLGKVDRKVIKQTVMTSVYGVTFIGAR 753
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAA 831
+QI+ L++KG ++DD +F A+ Y A
Sbjct: 754 QQIENALKDKGKVSDD-DMFLASRYLA 779
>gi|308808155|ref|XP_003081388.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
gi|116059850|emb|CAL55557.1| phage-type RNA polymerase (ISS) [Ostreococcus tauri]
Length = 973
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 261/727 (35%), Positives = 384/727 (52%), Gaps = 90/727 (12%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR 239
R+Q + E A ER V YKE K + LP ++ L ++ PL +AI+ E + +
Sbjct: 79 RKQREAENLACEREVARYKEFARKTFAAGIGAQLPVVQKLLASFYVPLVDAIKEEHEKIK 138
Query: 240 TKK---QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH-----------EDRCV----Q 281
+ + Y ++ LL +K+AV+ +H + +M G +D +
Sbjct: 139 SNVPGVDRRVYGHYLALLEPEKLAVLTLHTTLSTLMKGDLRLDVPIFRGDDDTAASGSAK 198
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTK----NYKRKK----IIADTEEVLSKE-KELLRKR 332
+ A +G+ ++ E+ + K YK+ + + AD SK+ +EL+ +R
Sbjct: 199 FITVAEQVGIVVQAEVNLGRMRAAEKIAKEAYKKSRQQTTLTADGGNAASKDVEELVEQR 258
Query: 333 VNSLIKSKRVMEAQKLLKNE----ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
+N + + ++ + + K+ E WGR+ + K+G+ L+ L+ TA + P
Sbjct: 259 INLTLDTSKMNTIKSVSKHARNALENAEWGREIRVKVGTVLLNALMNTAKIGVPEENGGV 318
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL-----EGLDRSAKHMLIP--YV 441
PAF H ++ YG++ + E + R+A L+P +
Sbjct: 319 L---TLPAFYHDYRE----------GGYGMLHWHDSIYRFINTETMTRAA---LVPVKHF 362
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTH-----GSRKQQEALKSVTGNCMKK-------- 488
PM+VPP++W YN GGYL + MR SR Q +AL++ K
Sbjct: 363 PMIVPPREWVRYNNGGYLRANTLCMRGKYSNEGPSRAQVQALEAKAREAELKNEPVLYQP 422
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-----LSEDMT- 542
V +AL+ LG T W+VN VL ++E +W GG IA + R ++ +P P L D
Sbjct: 423 VLDALNALGRTPWQVNTDVLPIVEEVWARGGGIAEVPLRAELQLPRWPGGSYALRSDKNR 482
Query: 543 ------------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
EV ++ SVRK KK N E HSQRCD +KL VAR MK+E Y+PHNL
Sbjct: 483 FQLLASGLPGKGEVIEFLQSVRKTKKSNMELHSQRCDFLIKLQVAREMKNEPNIYFPHNL 542
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGRAY MH HLNH+ SD+CRG+L F+E +PLG+ GLRW+ I A LF G +KL D
Sbjct: 543 DFRGRAYTMHVHLNHIGSDLCRGLLRFSEKKPLGERGLRWMYIQCATLFGNGADKLPMDE 602
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R+ F+ + + ++ SA++P+ WW AE+P+QCLA CI L +AL+ P +S+LP+
Sbjct: 603 RVQFIVDQIEQVRASAQDPLAKGAWWQDAEEPWQCLATCIELDKALELEDPTQFLSNLPV 662
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD----SNKDP 766
HQDGSCNGLQHYAALGR+ AVNLV ++ ADVY+ IA + I+ D + +
Sbjct: 663 HQDGSCNGLQHYAALGRDLHGGEAVNLVPADRGADVYTGIANVLKRIVADDIKLIDSDNE 722
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FA 825
A LA L +DRKLVKQTVMTSVYGVTF+GAR QI RL E+ + D+ L +
Sbjct: 723 EDVANAKLAMALAHHIDRKLVKQTVMTSVYGVTFIGARAQIYSRLREREVMEDNELLRYR 782
Query: 826 AACYAAK 832
+ YAA+
Sbjct: 783 VSTYAAR 789
>gi|89148146|gb|ABD62816.1| mitochondrial single-subunit RNA polymerase [Polysphondylium
pallidum]
Length = 862
Score = 404 bits (1038), Expect = e-109, Method: Compositional matrix adjust.
Identities = 248/711 (34%), Positives = 396/711 (55%), Gaps = 89/711 (12%)
Query: 163 KLQEYREMKKRKFNLLRRRQVKQETEAWERMVDE----YKEL--EAKMIEKRLAPNLPHI 216
+LQ+ +E + K+ L + +K ET+ + D Y++L + MI++ + L I
Sbjct: 21 ELQKQKEEESAKYKELYEK-IKLETDFEISVTDTARKAYRQLLNDTSMIQR--STGLKSI 77
Query: 217 KGLFLGWFGPLSEAIEREQKM-----------QRTKKQKAAYAP------HIELL---PA 256
K + W+ PL + +E K + + + A P H+E+L P
Sbjct: 78 KNVMFQWYDPLIKHTTQELKSFQQANASVLLSEDPEAEAEALNPLSRVPSHVEVLTRLPM 137
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
K+ +I +++M+ +++ + R + +IG ++ E ++ L+K + K+++
Sbjct: 138 KKLCLIALNQMVSEILSDPQ-RGTIMTSIVENIGESVLAEYQMQ-LLKKYDRLQYKRLM- 194
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVME-----AQKLLKNEETKPWGRDTQAKLGSRLVE 371
K N + + R ++ A L+ E DT K+GS +V+
Sbjct: 195 --------------KPFNGAVATVRTIQNYMRRAHNNLEQES------DTITKVGSFMVK 234
Query: 372 LLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR 431
++++ + ++ D + PAF ++++ K+YGV+ C V +D
Sbjct: 235 SIMDSCMINKYIDGEDID--EKVPAFYYKYR-------YNNNKKYGVISCHDNVYSLMDE 285
Query: 432 SAKHMLIP-----YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCM 486
H L+ +PM+VPP+ W NKG YL P ++MRT+GS+ Q+ +L + +
Sbjct: 286 G--HFLVEAMNARLLPMVVPPQPWTHPNKGCYLQYPCFIMRTNGSKLQKTSLYQ---SDL 340
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ- 545
++E L+ LG W+ N++++S+L W GG IA L R D +PE P ED+ + +
Sbjct: 341 TNIYEGLNVLGEVPWKTNEKMMSILLEAWEKGGGIADLPSRYDFELPESPSQEDLQDEKV 400
Query: 546 --KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +RK K N + HS RCDT KL+VA++++ E FY+PHN+DFRGR+YP+ PHL
Sbjct: 401 KRDFNKKLRKVKGANNDLHSLRCDTLYKLNVAKQLQ-EYTFYFPHNVDFRGRSYPIPPHL 459
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ SD CR L+FAE + LG+ G WLK+ +ANLF GV+K+S + R+AF ++ I+
Sbjct: 460 NHMGSDFCRSTLKFAEEKELGERGFEWLKVQVANLF--GVDKVSFEDRVAFTMENIENIY 517
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA+ P++G RWWL A+ P+Q LAACI L++A++S +P + S LPIHQDG+CNGLQHYA
Sbjct: 518 DSADRPLDGKRWWLKADSPWQTLAACIELTDAIRSGNPTTFKSSLPIHQDGTCNGLQHYA 577
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + L A VNL+ KP DVY+ +A V +I+ D+ LAK+L +++
Sbjct: 578 ALGGDELGALKVNLLPSPKPQDVYTGVAQMVAQIVHEDALAGDE------LAKLLDGKIE 631
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
RK++KQTVMTSVYGVTFVGAR QI+ L +K I D+ LF A Y +K +
Sbjct: 632 RKIIKQTVMTSVYGVTFVGARMQIENALSDKYQI-DEATLFKATTYLSKTT 681
>gi|156049831|ref|XP_001590882.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980]
gi|154693021|gb|EDN92759.1| hypothetical protein SS1G_08623 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1392
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 238/663 (35%), Positives = 371/663 (55%), Gaps = 54/663 (8%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQK 236
R Q + E +A + +D +++ + + + L L + W L+ A+E E K
Sbjct: 358 RDIQSQLEEDAVQAAIDRWRDESSNLAKLGLNTTLQSKSLGARMWKWQLALTAALEEELK 417
Query: 237 M---QRTKKQKAA-------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K+ ++A Y P + LPA+K++ + + M + + D+ + + A
Sbjct: 418 AIDEAEAKQHRSAADISRCEYGPFLRYLPAEKLSALTIISHMHALSSSGIDKGLTLSFAI 477
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV-----NSLIKSKR 341
+ I ++E E S E + K K + D+ ++ +L+ R S+ ++
Sbjct: 478 LQIAKSVEDE----SIFESIQQNKAKPLFRDSPADRARMLRILKSRARGASGESIDENHS 533
Query: 342 VMEAQK--LLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRP 395
+ + +L ++ W +AK+GS L+E L++ A V +HP + + ++P
Sbjct: 534 TNHSSEEFVLSQIRSREWSIGIRAKVGSFLLESLLKVAKVPVTLKHP--ETNETVTQMQP 591
Query: 396 AFRHRFKTILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLVPPKKWKG 452
AF H GQ + K+ GV+ + +++E L R H +L ++PMLV P+ W G
Sbjct: 592 AFSH---------GQQYRLGKKLGVINANKVIVELLKREPVHSLLAKHLPMLVKPEPWTG 642
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
++ GG+L P VMR + Q A ++ + VF L+ LG W++N+ V V
Sbjct: 643 FSSGGFLRHPGKVMRVKNGDQDQRNYADAAIDQGNLTTVFRGLNILGEQSWKINQPVFDV 702
Query: 511 LESIWVSGGNIAGLV-DRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDT 568
+ W SG IA L D+ + P +P S D E ++W +V+K + HSQRC
Sbjct: 703 MLDAWNSGDAIANLAPDKPRLEYPPEPETSSDPLERRRWVTAVKKVENAKAGFHSQRCFQ 762
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
+L +AR ++D+ FY+PHN+DFRGRAYP+ P+LNH+ +D CRG++ F G+ LG SGL
Sbjct: 763 NFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMIFGVGKKLGTSGL 821
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
+WLK+HLAN++ G +K S R F H+ EI+DSA NP+ G RWWL AEDP+QCLAA
Sbjct: 822 KWLKVHLANVY--GFDKASLSEREEFASKHIDEIYDSATNPLGGDRWWLQAEDPWQCLAA 879
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C+ L AL+S P S +S+LP+HQDG+CNGLQHYAALG + A VNL G++PADVY+
Sbjct: 880 CMELKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGDRPADVYT 939
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V E +K+D + SK AKIL ++ RK+VKQTVMT+VYGVTF+GA+ Q++
Sbjct: 940 AVADLVKESIKKDLLEGHSK------AKILDGKITRKVVKQTVMTNVYGVTFIGAKAQVR 993
Query: 809 RRL 811
++L
Sbjct: 994 KQL 996
>gi|302676686|ref|XP_003028026.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
gi|300101714|gb|EFI93123.1| hypothetical protein SCHCODRAFT_60184 [Schizophyllum commune H4-8]
Length = 1086
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 242/611 (39%), Positives = 355/611 (58%), Gaps = 55/611 (9%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
K Q +P++ L+ A++++++ + ++M L G ++ +A + +G A+E E
Sbjct: 160 KYQAEMISPYLALVNAERLSLLTIMELMTLHDTGGVTDGMKTARAVIAVGKAVEAEY--- 216
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE--TKPWG 358
K + KR I A S + + S ++ +RV A +L+++ E T PW
Sbjct: 217 ----KAQMCKRNHI-AVPSSTRSSDVSVFSNLGYSNLQERRVA-AARLMEDGEAWTAPWS 270
Query: 359 RDTQAKLGSRLVELLIETAYVQH-PVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRY 416
T+A++G L++ L++TA VQ V+ D + +PAF H ++ + GQ R
Sbjct: 271 VHTRARVGGVLIDCLMDTAKVQRTAVDKNDGKILTEEQPAFYHSYEYV---QGQ----RL 323
Query: 417 GVVECDPLVLEGLDRSAKHMLIPY---------VPMLVPPKKWKGYNKGGYLFLPSYVMR 467
GV++ + V A HM + +PMLV PK W YN GGYL+ +Y MR
Sbjct: 324 GVIKLNQEV-------AAHMANEWTIDTVHPRHLPMLVKPKPWLNYNDGGYLYHKTYAMR 376
Query: 468 THGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
GSR+QQ LK S G C + V+ LD LGST W++N+++ V+ +W G L
Sbjct: 377 FKGSREQQAYLKHASDAGQC-ELVYAGLDVLGSTPWKINRKIFDVVLEVWNRGDRWGKLP 435
Query: 526 DRN-DVLIPEKPLSEDMTEVQKWKWS--VRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
D PE LS D ++ WS ++ + Q HS RC K+ +AR E
Sbjct: 436 PATFDEPEPEA-LSPDADSRKRADWSHAMKLYNQAKQSNHSHRCSVNYKIEIARTFLGET 494
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY PHNLDFRGRAYP+ PHLNH+ D+ RG+L FAE +PLG+ G RWLKIH+ANL+ G
Sbjct: 495 -FYQPHNLDFRGRAYPVPPHLNHIGDDLSRGLLMFAEKKPLGERGFRWLKIHIANLY--G 551
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K S D R+ +VE+ L +++DSA NPING RWWL A+DP+QCLAA + L +A++S +P
Sbjct: 552 FDKASFDERVQWVEDRLADVYDSANNPINGKRWWLEADDPWQCLAASMELRDAIESGNPL 611
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ S LP+HQDG+CNGLQHYAALG + AA VNL ++P+DVY+ + V IM+ D
Sbjct: 612 AFESSLPVHQDGTCNGLQHYAALGGDPEGAAQVNLQKADRPSDVYTYVGRMVERIMEEDE 671
Query: 763 NK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
K DP +A +L ++ RK+VKQTVMT+VYGVTF+GAR+QI+R+L ++ I +
Sbjct: 672 KKGDP-------MAILLKGKISRKVVKQTVMTTVYGVTFIGARDQIERQLRDRKDIPPE- 723
Query: 822 QLFAAACYAAK 832
+ AA Y A+
Sbjct: 724 HCWGAATYLAR 734
>gi|71013602|ref|XP_758640.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
gi|46098298|gb|EAK83531.1| hypothetical protein UM02493.1 [Ustilago maydis 521]
Length = 1566
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 236/599 (39%), Positives = 355/599 (59%), Gaps = 42/599 (7%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LLPA K+A+I + ++M + G ++ +A + +G AIE E HS + +
Sbjct: 637 PFLRLLPASKLALITILELMRMSGNGDVSDGMKTTRAVLQVGRAIEMEY--HSDIVR--- 691
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-----TKPWGRDTQA 363
K KI + + LRKR + ++R ++A + + +E W + +A
Sbjct: 692 -KNPKIFQNAYTA----QTTLRKRGLIDLAARREIKAWQKQQEDEGVLSSIPSWTQTVRA 746
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
++GS LV+ L+ A V D + +PAF ++ + K+ GV++ +
Sbjct: 747 RVGSYLVQHLMNVATVNRKATDRDGVLWEEDQPAFYSTYQYL-------GGKKLGVIKLN 799
Query: 423 PLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
++ LD+ S + L P ++PMLVPPK W ++ GGY + MR S +Q L+
Sbjct: 800 EVIARRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRYKDSAEQGSYLRV 859
Query: 481 VTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLS 538
+ N + V ALD LG+T W++NK + V+ +W SG +IA + +V P+KP +
Sbjct: 860 ASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGKDIADMPPVEMEVPEPQKPDN 919
Query: 539 EDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
D +++ +++ K+ NQ+R HSQRCD KL +AR E FY+PHN+DFRGR
Sbjct: 920 YDH-DIKARSVYLQRLKQWNQQRASNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGR 977
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 978 AYPMPPHLNHIGNDLCRGLLLFADSKPLGKAGLRWLRIHISNVF--GYDKASFGEREQFA 1035
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDG 714
+H +I DS E P++G+ WWL A+DP+QCLAAC+ L AL+ + P + S LP+HQDG
Sbjct: 1036 IDHEADIRDSVERPLDGNCWWLKADDPWQCLAACMELKAALEHAEGPEAYESCLPVHQDG 1095
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL GE+PADVYS +A V +++ ++ K L
Sbjct: 1096 TCNGLQHYAALGGDLAGAKQVNLSRGERPADVYSGVADLVIKVLDEEAAKGER------L 1149
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
A IL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L ++G + + LFAAA + AKV
Sbjct: 1150 ASILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLADRGDVPAE-DLFAAASFLAKV 1207
>gi|303279985|ref|XP_003059285.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459121|gb|EEH56417.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 838
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 247/644 (38%), Positives = 364/644 (56%), Gaps = 57/644 (8%)
Query: 226 PLSEAIEREQKMQRTK---KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--- 279
PLS AIE+EQ R K + Y P + +L DK+AVI +H ++ +M G +DR
Sbjct: 31 PLSRAIEKEQAEIRKKVPGADRTNYGPFMLMLNPDKLAVITLHAVISQLMMG-DDRVKFS 89
Query: 280 --------VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRK 331
+ V+ +G A++ E+ + S L++ + K + + K
Sbjct: 90 GDNGQVGKSKFVRVVERLGEAVQAEVNL-SRLKQRGKVRPKDPSERERRFREETAGVSAK 148
Query: 332 RVNSLIKSKRVME-AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP 390
++ L + V + A++ L + + WG + KLGS L +LL+ETA ++ P +P +
Sbjct: 149 SLSKLTTVRSVAKFARRALNDSD---WGMTARVKLGSVLAKLLVETAKIEVP-DP-ESGE 203
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD----RSAKHMLIPYVPMLVP 446
+++PAF H ++ + + +RYG+V P + ++ R A+ L+ Y+PM+ P
Sbjct: 204 LEIKPAFEHHYEYVNRQ------QRYGMVSWHPAFFDYIEHEDMRHAQMSLVRYMPMVTP 257
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSR-----KQQEAL------KSVTGNC--MKKVFEAL 493
P+ W +++GGYL ++VMR + +R Q AL G C + V +AL
Sbjct: 258 PRPWSRFDQGGYLCSETFVMRGNYTRLGPSWGQIMALLGEQKRSDSDGECASYQPVLDAL 317
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ LG T W VN++ + V++ +W GG IAG+ R V ++P+ D E K V
Sbjct: 318 NVLGKTPWVVNERTVDVMQKVWDDGGGIAGVPPRRTV---DEPVWPDPGEYVNAKVRV-- 372
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
K+ N+E HSQRCD +KL VA+ M+DEE ++PHN+DFRGRAY MH HLNH+ SDVCRG
Sbjct: 373 -KRENRELHSQRCDFLIKLKVAQEMRDEEKIFFPHNIDFRGRAYTMHAHLNHIGSDVCRG 431
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLF-SGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
L F E RPLG++GL WL + ANL+ +GGV+KL D R +++ L I SA +P+
Sbjct: 432 ALLFQEARPLGENGLDWLYVQAANLYAAGGVDKLPLDERREWMKTRLDRIKASARDPLCA 491
Query: 673 S----RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
+WL AE+P+QCLA I ++ A+ S P S LP+HQDGSCNGLQHYAALGR+
Sbjct: 492 DDANCAFWLEAENPWQCLATFIEIAAAVDSGDPASYACRLPVHQDGSCNGLQHYAALGRD 551
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
VNL + P DVY+ +A + ++ D+ D S A A L +DRKLVK
Sbjct: 552 IGGGEQVNLTPRDSPGDVYTGVANVLKRMVAEDA-ADASDPETAATAAALAPHIDRKLVK 610
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
QTVMTSVYGVT VGAR+QI+ RL E+G I D+ + A YA++
Sbjct: 611 QTVMTSVYGVTHVGARQQIQSRLRERGAIEDESLRYRTANYASR 654
>gi|343427710|emb|CBQ71237.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 1551
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 236/599 (39%), Positives = 358/599 (59%), Gaps = 42/599 (7%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL K+A+I + ++M + G ++ +A + +G AIE E HS + +
Sbjct: 625 PFLHLLSPAKLALITILELMRMSGNGGVSDGMKTTRALLAVGRAIEMEY--HSEVVR--- 679
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE----TKP-WGRDTQA 363
K KI ++ + LRKR + ++R ++A ++ + EE + P W + +A
Sbjct: 680 -KNPKIFSNAHAA----QATLRKRGLIDLAARREIKAWQMQQEEEGVLSSIPRWTQPVRA 734
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
++GS LV+ L+ A V D + +PAF ++ + K+ GV++ +
Sbjct: 735 RVGSYLVQHLMHVATVNRKATDRDGVLWEEDQPAFYSTYQYL-------GGKKLGVIKLN 787
Query: 423 PLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
++ + LD+ S + L P ++PMLVPPK W ++ GGY + MR S +Q L++
Sbjct: 788 EVIAKRLDKDSIQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFKDSAEQGSYLRA 847
Query: 481 VTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLS 538
+ N + V ALD LG+T W++NK + V+ +W SG ++A + D P+KP +
Sbjct: 848 ASDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGEDLADMPPIEMDAPEPQKPDN 907
Query: 539 EDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
D +++ +++ K+ NQ+R HSQRCD KL +AR E FY+PHN+DFRGR
Sbjct: 908 YDH-DMKARSVYLQRLKQWNQQRASNHSQRCDVNYKLEIARAYVGER-FYFPHNMDFRGR 965
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 966 AYPMPPHLNHIGNDLCRGLLMFADSKPLGKAGLRWLRIHISNVF--GYDKASFAEREQFA 1023
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDG 714
+H +I DS E P++G+RWWL A+DP+QCLA+C+ L AL+ P + S LP+HQDG
Sbjct: 1024 IDHEADIRDSVERPLDGNRWWLKADDPWQCLASCMELKAALEHPEGPEAYESSLPVHQDG 1083
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL GEKPADVYS +A V +++ ++ K L
Sbjct: 1084 TCNGLQHYAALGGDLAGAKQVNLSRGEKPADVYSGVADLVIKVLDDEAAKGDR------L 1137
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
A IL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L ++G + + LFAAA + AKV
Sbjct: 1138 ASILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLADRGDVPAE-DLFAAASHLAKV 1195
>gi|46403038|gb|AAS92533.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 239/656 (36%), Positives = 375/656 (57%), Gaps = 63/656 (9%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +E+ + +++ + KAA AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELEKRIASMQAEIEALPESKAAVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S SP + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPSPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|393232267|gb|EJD39851.1| DNA/RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1218
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 252/665 (37%), Positives = 374/665 (56%), Gaps = 63/665 (9%)
Query: 199 ELEAKMIEK-RLAPNLPH--IKGLFLGWFGPLSEAIEREQKMQRTKKQKAA-------YA 248
E E ++ E +AP L ++ W L E +E E +++AA
Sbjct: 259 EHETRLFESLNMAPGLSRGPLRRWMWTWHQRLVEQLESEIVKIEVHERRAAQTSARPHIG 318
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHE--------DRCVQVVQAAVHIGMAIEQEIRIH 300
P++ LL ADK++++ + ++M L AG D V++ +A + I A+E E
Sbjct: 319 PYLRLLRADKLSMLTIMELMRLHSAGTSGSSGATGADPGVKLARALISIAQAVELE---- 374
Query: 301 SFLEKTKNYKRKKI-IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WG 358
+ +R+K+ + V S + + R+ L +E QK L ++ +P W
Sbjct: 375 ---HAAQLCRRRKVQLPANTGVTSFFSQSAQARMLQL-----RLERQKALADDAWQPEWS 426
Query: 359 RDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+ T+ KLG+ LV+ L+ A ++ HPV + + + AF H ++ GQK
Sbjct: 427 QITRVKLGAFLVDQLMAVAKIERTRTHPVTGEKLT--EEQAAFTHTYEY---QRGQK--- 478
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
GV++ +PLV E L + L+ ++PM+V PK W ++ GGYLF + VMR S+
Sbjct: 479 -LGVIKLNPLVTECLAEAPVRDLVHPRHLPMVVKPKPWIDHDNGGYLFSRASVMRIKDSQ 537
Query: 473 KQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+Q L+ SV GN M+ V+ LD LGST W +N+ V V+ +W SG + G + +
Sbjct: 538 EQLTYLRQASVLGN-MELVYSGLDVLGSTPWHINRGVFDVVLEVWNSGQGL-GSIPPAKL 595
Query: 531 LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYP 587
PE ED T++Q ++K K + HS+RC KL +AR E Y+P
Sbjct: 596 EEPEPDKPEDETDMQAKVAYLQKLKIWTTNKGNNHSERCSVNYKLEIARAFLGET-LYFP 654
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYP+ PHLNH+ D+ R +L+FAE RPLG+ G+RWLKIHL+NL+ G +K S
Sbjct: 655 HNIDFRGRAYPIPPHLNHMGDDLSRALLQFAESRPLGERGVRWLKIHLSNLY--GFDKAS 712
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
D R+AF E HL E+FDSA+NP+ G++WW AED +QCLAAC L+ AL+S P++ S
Sbjct: 713 FDDRVAFTEKHLDEVFDSADNPLTGNKWWQKAEDQWQCLAACKELTAALRSPDPYAYESC 772
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+HQDG+CNGLQHYAALG + + A VNL E+PADVYS +A V + +D+ K
Sbjct: 773 LPVHQDGTCNGLQHYAALGGDMIGAQQVNLDVTERPADVYSFVANMVEAEIAKDAEKGNG 832
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
AK+ ++ RK+VKQTVMT+VYGVT++GAR+QI R+L ++ + F A
Sbjct: 833 ------YAKLAQGKISRKIVKQTVMTTVYGVTYIGARDQILRQLRDRKDLFHYDDTFGIA 886
Query: 828 CYAAK 832
Y A+
Sbjct: 887 GYLAR 891
>gi|54112152|gb|AAV28755.1| RPO41p [Cryptococcus gattii]
Length = 1180
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 239/656 (36%), Positives = 374/656 (57%), Gaps = 63/656 (9%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +ER + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELERRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLAAC L+ AL+S P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLAACFELAAALRSPDPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|25777802|gb|AAN75608.1| RPO41 [Cryptococcus neoformans var. neoformans]
Length = 1202
Score = 394 bits (1012), Expect = e-106, Method: Compositional matrix adjust.
Identities = 243/654 (37%), Positives = 372/654 (56%), Gaps = 49/654 (7%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTEEV 321
+ ++M + +G ++V++ V +G A+E E R + + +Y K I +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQK 361
Query: 322 LSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSRLV 370
S++ + +K ++KRV E K+L ++ T W R Q +GS LV
Sbjct: 362 PSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELV 421
Query: 371 ELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 422 DALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYV-------RGKKLGVIKLNPVVAAR 474
Query: 429 LDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC- 485
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 475 LAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGH 534
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDMT 542
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S D
Sbjct: 535 LEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQD 594
Query: 543 EVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAYPM 599
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAYP+
Sbjct: 595 PQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPI 652
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F + H
Sbjct: 653 PPHLSPVGDDLCRGLLTFGNQKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHE 710
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CNG+
Sbjct: 711 ADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAYESSLPVHQDGTCNGM 770
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 771 QHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK--- 824
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 825 EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|58266658|ref|XP_570485.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110360|ref|XP_776007.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258675|gb|EAL21360.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226718|gb|AAW43178.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1202
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 243/654 (37%), Positives = 372/654 (56%), Gaps = 49/654 (7%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTEEV 321
+ ++M + +G ++V++ V +G A+E E R + + +Y K I +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQK 361
Query: 322 LSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSRLV 370
S++ + +K ++KRV E K+L ++ T W R Q +GS LV
Sbjct: 362 PSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELV 421
Query: 371 ELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 422 DALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYV-------RGKKLGVIKLNPVVAAR 474
Query: 429 LDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC- 485
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 475 LAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGH 534
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDMT 542
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S D
Sbjct: 535 LEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQD 594
Query: 543 EVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAYPM 599
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAYP+
Sbjct: 595 PQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPI 652
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F + H
Sbjct: 653 PPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHE 710
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CNG+
Sbjct: 711 ADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAYESSLPVHQDGTCNGM 770
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 771 QHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK--- 824
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 825 EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|449016962|dbj|BAM80364.1| single subunit mitochondrial RNA polymerase [Cyanidioschyzon merolae
strain 10D]
Length = 1252
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 255/691 (36%), Positives = 372/691 (53%), Gaps = 74/691 (10%)
Query: 173 RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
R+FNL E A E V Y+ +E+ +L + L L WF P++ AI
Sbjct: 420 REFNL--------EERAVEAAVARYRSFTQSALERGDINSLQPSQRLLLSWFFPVTMAIH 471
Query: 233 REQKMQRTKKQKAAY-----APHIELLPADKVAVIVMHKMMGLVMAGHEDRC-VQVVQAA 286
+EQ +R ++ + +Y PH+ L + +AVI +H+ +G V+ +DR V ++ A
Sbjct: 472 QEQ--ERIRRGELSYDGNVCGPHLLRLKPEVLAVIALHETLGRVL---QDRAGVAFIRVA 526
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+G +++ EI + E + +++ D L + L ++ R + A
Sbjct: 527 SAVGRSVQAEINLQRLRELHSEQRHRQLPQD--RALRRTLAL----ASTGSGGSRAVAAI 580
Query: 347 KLLKNE---ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
L +T W K+GS L+ +++ A + H P AFRH ++
Sbjct: 581 NLAAKRMELDTATWDDSVTIKVGSVLISFVMKHALI-HIDTPTGKQAVQ---AFRHGYR- 635
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGL---DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYL 459
P Q+ ++ GV+E VL L + + ++P + PMLVPP+ W YN GGYL
Sbjct: 636 ----PLQREPRKVGVIELHKSVLNLLLANESDLRETILPRFQPMLVPPRPWTAYNSGGYL 691
Query: 460 FLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
VMR GSR Q EALK + +VF L+ LG+T WR+N+ VL V+E +W +GG
Sbjct: 692 RPRGLVMRVRGSRLQLEALKK---GDLSEVFAGLNALGATPWRINRPVLDVVEKLWRAGG 748
Query: 520 NIAGLVDRNDVLIPEKPLSEDMTE---------------VQKWKWSVRKAKKINQERHSQ 564
+IAGLV R D+ +P L+E + + ++ + ++ + +K N+ERH+
Sbjct: 749 DIAGLVARADLQLPA--LAESVVDPAPDGKESAASTESLSREQRRAIWRIRKTNRERHAL 806
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA-EGRPL 623
RC+ +L AR D FY PHNLDFRGRAYPM HL+H+SSDVCRG+L FA G +
Sbjct: 807 RCELHYRLETAREFADVSRFYLPHNLDFRGRAYPMPSHLHHMSSDVCRGLLTFAGPGLRV 866
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS--RWWLTAED 681
G+ GL W+K+HLANL G++KL D R+AF E+ + ++ A P S WW ED
Sbjct: 867 GERGLFWMKVHLANLC--GMDKLPFDERVAFAESVMPKVLAVAAAPTADSNLEWWAQQED 924
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQ LAAC L+ A P S LPI QDGSCNGLQHYAALGR+ VNL+ E
Sbjct: 925 PFQLLAACFELAAAKGGLDP-DYHSTLPIQQDGSCNGLQHYAALGRDERGGYQVNLLPSE 983
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+P DVYS +A V E + D+ + +A++L ++ RK+VKQTVMTSVYGVT +
Sbjct: 984 RPQDVYSGVAELVRERVAHDAREG------VPIAQLLQGRISRKIVKQTVMTSVYGVTLI 1037
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
GAREQI+ RL E +++ + A+ Y AK
Sbjct: 1038 GAREQIQNRLRELPDFPEEKT-WEASFYLAK 1067
>gi|58266656|ref|XP_570484.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110362|ref|XP_776008.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|25956307|gb|AAN75721.1| RPO41 [Cryptococcus neoformans var. neoformans]
gi|50258676|gb|EAL21361.1| hypothetical protein CNBD0570 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226717|gb|AAW43177.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1180
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 243/654 (37%), Positives = 372/654 (56%), Gaps = 49/654 (7%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTEEV 321
+ ++M + +G ++V++ V +G A+E E R + + +Y K I +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQTQK 361
Query: 322 LSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSRLV 370
S++ + +K ++KRV E K+L ++ T W R Q +GS LV
Sbjct: 362 PSRQLIGSVWKKIGEQANQAKRVGKNEGDKILPPNHDDMQDIWTPAWSRMIQLGVGSELV 421
Query: 371 ELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 422 DALLKVAKVERTAKDRNTGEMITELQPAFTHAYEYV-------RGKKLGVIKLNPVVAAR 474
Query: 429 LDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC- 485
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 475 LAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEEGH 534
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDMT 542
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S D
Sbjct: 535 LEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDSSDQD 594
Query: 543 EVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAYPM 599
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAYP+
Sbjct: 595 PQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAYPI 652
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F + H
Sbjct: 653 PPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQEHE 710
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CNG+
Sbjct: 711 ADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASALRSPNPSAYESSLPVHQDGTCNGM 770
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 771 QHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK--- 824
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 825 EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|56566235|gb|AAN75149.2| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1202
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 243/658 (36%), Positives = 371/658 (56%), Gaps = 57/658 (8%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
+ ++M + +G ++V++ V +G A+E E R E KN + +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRA----ETIKNVAGVDSYHWLKTIDP 357
Query: 324 KEKELLRKRVNSLIK--SKRVMEAQKLLKNEE---------------TKPWGRDTQAKLG 366
+ ++ R+ + S+ K ++ +A+++ KNE T W R Q +G
Sbjct: 358 QTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGRILPPNHDDMQDIWTPAWSRMIQLGVG 417
Query: 367 SRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+
Sbjct: 418 SELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYV-------RGKKLGVIKLNPV 470
Query: 425 VLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT 482
V L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 471 VAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAAS 530
Query: 483 GNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLS 538
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S
Sbjct: 531 EEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDS 590
Query: 539 EDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGR 595
D + ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGR
Sbjct: 591 SDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGR 648
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F
Sbjct: 649 AYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFA 706
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S P + S LP+HQDG+
Sbjct: 707 QEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPIPSAYESSLPVHQDGT 766
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNG+QHYAALG + A AVNL AG++PAD+YS + V+++++ D + H ALL
Sbjct: 767 CNGMQHYAALGGDVRGAKAVNLEAGDRPADIYSGVVDIVNKVVEEDKK---AGHDIALLI 823
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 824 K---EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|405119910|gb|AFR94681.1| mitochondrial-related RNA polymerase [Cryptococcus neoformans var.
grubii H99]
Length = 1324
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 242/658 (36%), Positives = 372/658 (56%), Gaps = 57/658 (8%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 370 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 423
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
+ ++M + +G ++V++ V +G A+E E R E KN + +
Sbjct: 424 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRA----ETIKNVAGVDSYHWLKTIDP 479
Query: 324 KEKELLRKRVNSLIK--SKRVMEAQKLLKNEE---------------TKPWGRDTQAKLG 366
+ ++ R+ + S+ K ++ +A+++ KNE T W R Q +G
Sbjct: 480 QTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGGILPPNHDDMQDIWTPAWSRMIQLGVG 539
Query: 367 SRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+
Sbjct: 540 SELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYV-------RGKKLGVIKLNPV 592
Query: 425 VLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT 482
V L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 593 VAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAAS 652
Query: 483 GNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLS 538
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S
Sbjct: 653 EEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDS 712
Query: 539 EDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGR 595
D + ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGR
Sbjct: 713 SDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGR 770
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F
Sbjct: 771 AYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFA 828
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+
Sbjct: 829 QEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGT 888
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNG+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL
Sbjct: 889 CNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLI 945
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 946 K---EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 999
>gi|25573208|gb|AAN75176.1| RPO41 [Cryptococcus neoformans var. grubii]
Length = 1180
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 242/658 (36%), Positives = 372/658 (56%), Gaps = 57/658 (8%)
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIV 263
+EKR+A I L P S+A K T + K ++ LLP DK+A+I
Sbjct: 248 LEKRIASMQAEIDAL------PESKAAVTPPKYSATARMKPQVLLMYLSLLPVDKLALIT 301
Query: 264 MHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323
+ ++M + +G ++V++ V +G A+E E R E KN + +
Sbjct: 302 ILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRA----ETIKNVAGVDSYHWLKTIDP 357
Query: 324 KEKELLRKRVNSLIK--SKRVMEAQKLLKNEE---------------TKPWGRDTQAKLG 366
+ ++ R+ + S+ K ++ +A+++ KNE T W R Q +G
Sbjct: 358 QTQKPSRQLIGSVWKKIGEQANQAKRVGKNEGGGILPPNHDDMQDIWTPAWSRMIQLGVG 417
Query: 367 SRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+
Sbjct: 418 SELVDALLKVAKVERTAKDRNTGEIITELQPAFTHAYEYV-------RGKKLGVIKLNPV 470
Query: 425 VLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT 482
V L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 471 VAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAAS 530
Query: 483 GNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLS 538
++ VF LD L ST WRVN++V V+ W G IA + D+ PEKP S
Sbjct: 531 EEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSEDKAHYEFPEKPDS 590
Query: 539 EDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGR 595
D + ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGR
Sbjct: 591 SDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDI--FYLPHNMDFRGR 648
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F
Sbjct: 649 AYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFA 706
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+
Sbjct: 707 QEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGT 766
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNG+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL
Sbjct: 767 CNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLI 823
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
K + + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 824 K---EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|403413111|emb|CCL99811.1| predicted protein [Fibroporia radiculosa]
Length = 1321
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/603 (36%), Positives = 354/603 (58%), Gaps = 36/603 (5%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K+ A +P + LL +K+++I + ++M L G ++ +A + +G A+E E
Sbjct: 428 KRSAGLSPFLSLLTPEKLSLIAIMELMHLQGTGGVADGMKTARALLAVGKAVELE----- 482
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE--TKPWGR 359
K + K+ + T + + + ++++RV A+K +++ E T W +
Sbjct: 483 --HKAEMCKKSNLPIPTSSGRTSDHSFFTRLGYRDLQARRVA-ARKFMEDAEDWTTDWTQ 539
Query: 360 DTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
+ K+GS LV+ L++ A V + + +PAF H ++ + + + G
Sbjct: 540 VVRVKVGSFLVDALMDVATVMRTGVDKRTGEAISEEQPAFFHSYEYLRGY-------KLG 592
Query: 418 VVECDPLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
V++ +PL+ E + + S + L P ++PMLV PK W +++GGYL+ ++VMR S++QQ
Sbjct: 593 VIKLNPLISEKMAKESIRETLHPRHLPMLVKPKPWLSHDQGGYLYNKTWVMRFKESQEQQ 652
Query: 476 EALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
L+ S GN ++ ++ +LD LG+T W++N+++ ++ +W SG + D
Sbjct: 653 SYLRHASSLGN-LELIYASLDVLGNTPWKINRRIFDIVLEVWNSGTRWCKIPPAAFDAPE 711
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKI--NQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
PEKP + D K + R+ + HS RC K+ +AR + Y+PHN+
Sbjct: 712 PEKPENFDTDPRAKMIYLTRQKQYALGRANNHSDRCSVNYKIEIARAFLGDT-IYFPHNV 770
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG+ GLRWLKIHLANL+ G +K + D
Sbjct: 771 DFRGRAYPLPPHLSHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GYDKANFDE 828
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R++FV +HL +IFDSA+NP+ G +WW A+DP+QCLA CI L AL+S PH+ LP+
Sbjct: 829 RVSFVHDHLDDIFDSADNPLEGKKWWTKADDPWQCLATCIELKAALQSPDPHTYECALPV 888
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
HQDG+CNGLQHYAALG + A VNL ++P+DVY+ +A V + M+ D D
Sbjct: 889 HQDGTCNGLQHYAALGGDAQGARQVNLDVTDRPSDVYTFVAEMVEKAMEEDVKLDHK--- 945
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830
AK+L ++ RK+VKQTVMT+VYGVTF+GAREQI+++L+++G I + AA+ A
Sbjct: 946 ---YAKMLTGKISRKVVKQTVMTTVYGVTFIGAREQIEKQLKDRGDIAAEECWLAASYVA 1002
Query: 831 AKV 833
KV
Sbjct: 1003 KKV 1005
>gi|365765907|gb|EHN07411.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1351
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 249/666 (37%), Positives = 357/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D T ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVTK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ S K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 KIRNCSRKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>gi|334362824|gb|AEG78618.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/656 (36%), Positives = 374/656 (57%), Gaps = 63/656 (9%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +E+ + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELEKRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|388578906|gb|EIM19238.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 1136
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 250/705 (35%), Positives = 391/705 (55%), Gaps = 74/705 (10%)
Query: 181 RQVKQETEAWE----RMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER--- 233
RQ E A+E R E ELE + L+ + ++ L W+ +S I+
Sbjct: 145 RQRLLEESAYETAKARFEHEMNELEKAGVSTALSGH--PLQKLMWDWWKKVSVDIQAKLQ 202
Query: 234 ---EQKMQRTKKQK--AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E +TK++K P + LL ++K+++I + +++ L G ++ +A +
Sbjct: 203 KSMETTNPKTKEEKFMNEITPFLSLLSSEKMSLITVLEILRLSGTGGIAEGMKTTRALLS 262
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK---------EKELLRKRV------ 333
+G A+E E L++ K + AD ++V K EKEL K
Sbjct: 263 VGKAVENEHHAE-ILKQKHGISLKGVEADAKQVKRKLRYFDHRKAEKELDLKSPEFTGLI 321
Query: 334 -NSLIKSKRVMEA---------------QKLLKNEETKPWGRDTQAKLGSRLVELLIETA 377
+++ S++ EA ++ + T W + + K+GS LV+ L+E A
Sbjct: 322 DDAMGTSEQSPEAHSHDIASERAKARVVEERMNKAWTPNWSQIIRIKVGSFLVDSLMECA 381
Query: 378 YV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
+ +HP + + + + +PAF ++ + K+ GV++ + V + LD+
Sbjct: 382 TITRTAKHPESGEEMT--EAQPAFSQSYQYV-------RGKKLGVIKVNTAVADRLDKDP 432
Query: 434 KHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE-ALKSVTGNCMKKVF 490
I ++PMLV PK W Y+ GGYLF + MR S +QQ LK+ + M+ V
Sbjct: 433 LGSTIHPRHLPMLVKPKPWLRYDSGGYLFHKNSAMRFKDSNEQQSYILKASSEGTMEPVL 492
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKW 549
LD LG+T W +N++V +V++ W +G +A + P KP + + ++ +
Sbjct: 493 AGLDVLGATPWNINRKVFNVVKEAWNTGEGLAKIPPATTKTPDPVKPANYAIDPKERSNY 552
Query: 550 SVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+N+ R HS RCDT KL +AR +E FY+PH LDFRGRAYP+ PHLNH+
Sbjct: 553 LQSMKAVVNERRNNHSIRCDTNYKLEIARAFLNET-FYFPHTLDFRGRAYPIPPHLNHIG 611
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+ RG+L FAE RPLG+ G+RWLKIHLAN++ G +K S + R F + H+ EI+DSA+
Sbjct: 612 DDLSRGLLIFAEKRPLGEKGMRWLKIHLANVY--GYDKASFNEREQFADEHMEEIYDSAD 669
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP+NG +WWL A+DP+QCLAAC + A+ S +P + S LP+HQDG+CNGLQHYAALG
Sbjct: 670 NPLNGRKWWLKADDPWQCLAACYEIQAAMLSPNPLAYESALPVHQDGTCNGLQHYAALGG 729
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ + A VNL G++P+DVY+ +A V E +K+D+ + ++ AKIL ++ RK+V
Sbjct: 730 DPMGAKQVNLEQGDRPSDVYTAVADLVIEDIKKDALESDNE-----FAKILEGKITRKVV 784
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
KQTVMT+VYGVTF+GAR+QI ++L+++G I D+ ++ A Y AK
Sbjct: 785 KQTVMTTVYGVTFIGARDQIDKQLQDRGDIPQDK-VYTTASYLAK 828
>gi|384499375|gb|EIE89866.1| hypothetical protein RO3G_14577 [Rhizopus delemar RA 99-880]
Length = 1239
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 247/672 (36%), Positives = 365/672 (54%), Gaps = 53/672 (7%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHI---KGLFLGWFGPLS----EAIERE 234
Q+ E + +E + + + IE+ N H+ K + W L+ E I+R
Sbjct: 270 QLSLERQGYEMALQRLLHTKEQSIERGDTLNAMHLTPLKRIMWTWHQNLTLLIDEEIKRC 329
Query: 235 QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+ ++ AY P +++LP D ++++ + +++ L + ++ +A + +G A+E
Sbjct: 330 EVAAPRDHERRAYGPFLKVLPKDTLSIVTILELLRLHNSSGIGDGMKTARAILDVGKAVE 389
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
E H+ ++ K+ K ++ I + VLS + L VN K K++ N+E
Sbjct: 390 ME---HNAVQMKKHAKSQQNI---QNVLSSGR-LFNMAVNKAHK--------KIVNNDEN 434
Query: 355 KP-----WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFRHRFKTILKH 407
W T+AK+GS L LL+E A + P + V PAF H ++ +L
Sbjct: 435 SAEWNPVWPTTTRAKVGSVLTSLLLEAAKIPVPSRDPETGKKIVENIPAFFHTYQYVLG- 493
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYV 465
KR G+++ + E L R + L P +PMLVPP+ W YN GGYL S
Sbjct: 494 ------KRVGIIKFADQLTEMLSREPIRDTLHPRLLPMLVPPRPWLSYNSGGYLQTKSVC 547
Query: 466 MRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR S +Q L K+ + ++ V LD LGST+W+VNK V ++ W G IA +
Sbjct: 548 MRIKDSAEQLIYLHKASERDLLQDVLAGLDVLGSTRWKVNKNVFKIILEAWNKGEAIADI 607
Query: 525 --VDRNDVLIPEKPLSEDMTEVQKWKW--SVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+P KP + K+ W V++ + + HS RCD K+ AR +
Sbjct: 608 PPAVNGPTPLPPKPENYHTDPKAKFNWVNEVKQIQTTEKNNHSLRCDVNYKVETARAFLN 667
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
Y+PHN+DFRGRAYPM P LNHL +D+CRG+L F E +PLG+ G RWLKIHLANL+
Sbjct: 668 LP-MYFPHNMDFRGRAYPMPPTLNHLGNDLCRGLLHFEEAKPLGEKGWRWLKIHLANLY- 725
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G +K S R F +++ I D+ +NP+ G +WWL A+ P+QCLAAC ++EA++S
Sbjct: 726 -GYDKHSFTEREQFTLDNIDNIIDAVDNPLTGKQWWLKADSPWQCLAACFEVAEAVRSGK 784
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P S LP+HQDG+CNGLQHYAALG + A AVNL AG++PADVY+ +A V++ +
Sbjct: 785 PEEFKSRLPVHQDGTCNGLQHYAALGGDLAGARAVNLAAGDRPADVYTGVADMVNKYI-- 842
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D + AKIL V RK+VKQTVMT+VYGVTFVGAR QI+ RL+E I D
Sbjct: 843 ----DKAAEEGNEYAKILQGNVSRKVVKQTVMTNVYGVTFVGARAQIENRLKENPDIPRD 898
Query: 821 RQLFAAACYAAK 832
+ ++A + Y AK
Sbjct: 899 K-VYALSSYLAK 909
>gi|190406539|gb|EDV09806.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae RM11-1a]
Length = 1351
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 248/666 (37%), Positives = 357/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D T ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 RLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>gi|259146153|emb|CAY79412.1| Rpo41p [Saccharomyces cerevisiae EC1118]
Length = 1351
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 248/666 (37%), Positives = 357/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D T ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 RLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>gi|334362790|gb|AEG78585.1| RPO41 [Cryptococcus gattii]
Length = 1180
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 237/656 (36%), Positives = 374/656 (57%), Gaps = 63/656 (9%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +E+ + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELEKRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ A V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVAKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST WR+N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWRINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFAVSSYIAKT 877
>gi|281210629|gb|EFA84795.1| DNA-dependent RNA polymerase [Polysphondylium pallidum PN500]
Length = 1010
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/448 (44%), Positives = 285/448 (63%), Gaps = 30/448 (6%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP-----YVPMLVPPKK 449
PAF ++++ K+YGV+ C V +D H L+ +PM+VPP+
Sbjct: 270 PAFYYKYR-------YNNNKKYGVISCHDNVYSLMDEG--HFLVEAMNARLLPMVVPPQP 320
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
W NKG YL P ++MRT+GS+ Q+ +L + ++E L+ LG W+ N++++S
Sbjct: 321 WTHPNKGCYLQYPCFIMRTNGSKLQKTSLYQSD---LTNIYEGLNVLGEVPWKTNEKMMS 377
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ---KWKWSVRKAKKINQERHSQRC 566
+L W GG IA L R D +PE P ED+ + + + +RK K N + HS RC
Sbjct: 378 ILLEAWEKGGGIADLPSRYDFELPESPSQEDLQDEKVKRDFNKKLRKVKGANNDLHSLRC 437
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
DT KL+VA++++ E FY+PHN+DFRGR+YP+ PHLNH+ SD CR +L+FAE + LG+
Sbjct: 438 DTLYKLNVAKQLQ-EYTFYFPHNVDFRGRSYPIPPHLNHMGSDFCRSMLKFAEEKELGER 496
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G WLK+ +ANLF GV+K+S + R+AF ++ I+DSA+ P++G RWWL A+ P+Q L
Sbjct: 497 GFEWLKVQVANLF--GVDKVSFEDRVAFTMENIENIYDSADRPLDGKRWWLKADSPWQTL 554
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AACI L++A++S +P + S LPIHQDG+CNGLQHYAALG + L A VNL+ KP DV
Sbjct: 555 AACIELTDAIRSGNPTTFKSSLPIHQDGTCNGLQHYAALGGDELGALKVNLLPSPKPQDV 614
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
Y+ +A V +I+ D+ LAK+L +++RK++KQTVMTSVYGVTFVGAR Q
Sbjct: 615 YTGVAQMVAQIVHEDALAGDE------LAKLLDGKIERKIIKQTVMTSVYGVTFVGARMQ 668
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVS 834
I+ L +K I D+ LF A Y +K +
Sbjct: 669 IENALSDKYQI-DEATLFKATTYLSKTT 695
>gi|256268895|gb|EEU04244.1| Rpo41p [Saccharomyces cerevisiae JAY291]
Length = 1351
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/666 (37%), Positives = 357/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D T ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 RLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>gi|406868664|gb|EKD21701.1| DNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1461
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 226/597 (37%), Positives = 334/597 (55%), Gaps = 54/597 (9%)
Query: 235 QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIE 294
+KM + Y P + LLP DK+A + + M + + D+ + + A + I ++E
Sbjct: 430 KKMLPEDLDRVIYGPFLRLLPPDKLAAVTILSAMTTMSSMGLDKGIPLSNAIMAIAKSVE 489
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE-- 352
E + + +K K I ++ R + L ++ R ++ L+ +
Sbjct: 490 DECAFDTIQKASK----KNIWPNSNN---------RPDIGQLKRATRFRTSKPLIDLDQS 536
Query: 353 ------ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD-------VRPAFRH 399
E + W +AK+G+ L+ LIE A V P + P+ ++PAF H
Sbjct: 537 ETAEALEDRQWPLAMRAKVGAFLMSALIEVAKV-----PVALTHPETGEIVTQMQPAFCH 591
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLVPPKKWKGYNKGGY 458
+ K K+ GV+ + ++ L R H +L ++PMLV P+ W ++KGG+
Sbjct: 592 AHQ-------YKLGKKVGVIMANKSLVATLKREPVHSLLAKHLPMLVEPEPWSDFSKGGF 644
Query: 459 LFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
L PS +MR K Q A ++ M F+ L+ LG T WR+N+QV V+ W
Sbjct: 645 LAHPSKIMRVKTGDKDQRYYAEAAIGQGDMTLTFKGLNVLGKTSWRINQQVFDVMLEAWN 704
Query: 517 SGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
+G IA + L PE S+D E ++W +V+ + HSQRC +L +
Sbjct: 705 AGDAIANIPPETPNLKAPPEPEASQDPLERRQWIRAVKNVENHRSGLHSQRCFQNFQLEI 764
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR +K EE FY+PHN+DFRGRAYP+ P+LNH+ +D CRG+L F +GR LG+SGLRWLKIH
Sbjct: 765 ARALKHEE-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLLIFGKGRELGESGLRWLKIH 823
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
AN+F G +K S R AF H+ ++F++A+NP+ G+RWWL AEDP+Q LAAC+ L
Sbjct: 824 AANVF--GFDKASLSEREAFAMKHMDQMFEAAKNPLGGTRWWLNAEDPWQFLAACMELKN 881
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
A++S P +SHLP+HQDG+CNGLQHYAALG +T A VNL ++PADVY+ +A V
Sbjct: 882 AMESPDPTRFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPADRPADVYTAVADLV 941
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
E + D K AKIL +V RK+VKQTVMT+VYGVT++GA+ Q++R+L
Sbjct: 942 KESIAEDLANGNQK------AKILEGKVTRKVVKQTVMTNVYGVTYIGAKAQVRRQL 992
>gi|443897435|dbj|GAC74776.1| mitochondrial/chloroplast DNA-directed RNA polymerase RPO41
[Pseudozyma antarctica T-34]
Length = 1509
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 232/598 (38%), Positives = 350/598 (58%), Gaps = 40/598 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LLP K+A+I + ++M + G ++ +A + +G AIE E HS + +
Sbjct: 594 PFLRLLPVSKLALITVLELMRMSGNGGVSDGMKTTRALLQVGRAIETEY--HSEVIR--- 648
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE----ETKPWGRDTQAK 364
K KI + + + L ++ + + + E QK + + W + T+A+
Sbjct: 649 -KNPKIF---QNAQAAQAALKKRGLVDFAARREIKEWQKQQEEQGVISSIPKWTQITRAR 704
Query: 365 LGSRLVELLIETAYVQHPVNPAD-YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
+GS LV+ L++ A V D + +PAF ++ + K+ GV++ +
Sbjct: 705 VGSYLVQHLMQVATVNRKATDRDGILWEEDQPAFYSTYQYL-------GGKKLGVIKLNE 757
Query: 424 LVLEGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
+V + LD+ S L P ++PMLVPPK W ++ GGY + MR S +Q L++
Sbjct: 758 VVAKRLDKDSISETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRFKDSAEQGSYLRAA 817
Query: 482 TGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSE 539
+ N + V ALD LG+T W++NK + V+ +W SG +IA + + P KP +
Sbjct: 818 SDNGDLDTVLAALDVLGNTSWKINKPIFDVMLEVWNSGKDIADMPPMEMETPEPVKPDNY 877
Query: 540 DMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D +++ +++ K+ NQ+R HSQRCD KL +AR E FY+PHN+DFRGRA
Sbjct: 878 DH-DIKARSVYLQRLKQWNQQRSSNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGRA 935
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 936 YPMPPHLNHIGNDLCRGLLMFADSKPLGKAGLRWLRIHISNVF--GYDKASFGEREQFAI 993
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGS 715
+H +I DS E P++G+RWWL A+DP+QCLAAC+ L AL P + S LP+HQDG+
Sbjct: 994 DHEADIRDSVERPLDGNRWWLKADDPWQCLAACMELRAALDHPEGPEAYESCLPVHQDGT 1053
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALG + A VNL G++PADVYS +A V +++ ++ K A
Sbjct: 1054 CNGLQHYAALGGDLAGAKQVNLSGGDRPADVYSGVADLVIKVLDEEAAKGDRT------A 1107
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
KIL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L ++G + + LF AA + AKV
Sbjct: 1108 KILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLADRGDVPAE-DLFNAASFLAKV 1164
>gi|392587510|gb|EIW76844.1| DNA/RNA polymerase [Coniophora puteana RWD-64-598 SS2]
Length = 1215
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 228/590 (38%), Positives = 335/590 (56%), Gaps = 34/590 (5%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K P + L+ +K++++V+ ++M L +G ++ +A + +G A+E E
Sbjct: 312 RKPATQIGPFLSLIKPEKLSLLVILEVMRLSGSGGVLDGMKTARALLTVGRAVENEY--- 368
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGR 359
K + K+ I S + +++ R+ A+ L +NEE T W +
Sbjct: 369 ----KAEMCKKNNIAVPQHTRFSGDVNFFSGNGYKALQAGRLAAAKYLEENEEWTSDWTQ 424
Query: 360 DTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
+ ++G LV+ L++ A ++ + +PAF H ++ + GQK G
Sbjct: 425 QLRVRIGGILVDCLMDVATIERQAVDKRTGEKISEQQPAFYHAYEYVR---GQK----LG 477
Query: 418 VVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
V+ +P V E L + + L P ++PMLV PK W +GGY++ S MR S +QQ
Sbjct: 478 VIRINPFVAEHLAKDGMQGTLHPRHLPMLVQPKPWVNAEQGGYIYSKSSAMRYKDSIEQQ 537
Query: 476 EALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR-NDVLI 532
+ L+ S GNC + V+ LD LGST W+VN++V ++ +W SG + + DV
Sbjct: 538 KYLQHASALGNC-ELVYAGLDVLGSTPWKVNEKVFDIVLQVWNSGERLGKMPPAVFDVPE 596
Query: 533 PEKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
PE+P + D+ + +R HS RC K+ VAR + Y PHNL
Sbjct: 597 PERPANVETDVKAKTVYGQRMRAWTNDKANAHSDRCSVNYKIEVARAFLGDT-MYLPHNL 655
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGRAYP+ PHLNHL D+ RG+L FA+G+PLG GLRWLKIH+ANL+ G +K + D
Sbjct: 656 DFRGRAYPIPPHLNHLGDDLSRGLLRFAKGKPLGVRGLRWLKIHIANLY--GFDKANFDE 713
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R F +L EI+DSAENP+ G RWW+ A+DP+QCL ACI L AL + P + +SHLP+
Sbjct: 714 REEFAMKYLEEIYDSAENPLTGKRWWMKADDPWQCLGACIELKAALDAPEPTAYVSHLPV 773
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
HQDG+CNGLQHYAALG + AA VNL ++P+DVY+ +A V + D K KH
Sbjct: 774 HQDGTCNGLQHYAALGGDQQGAAQVNLAVTDRPSDVYTHVAKMVERRLAEDCVKG-EKHA 832
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
+ LL KI RK+VKQTVMT+VYGVTFVGAR+QI+R+L ++ I ++
Sbjct: 833 ELLLGKIT-----RKVVKQTVMTTVYGVTFVGARDQIERQLSDRKDIPEE 877
>gi|151940727|gb|EDN59114.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae YJM789]
Length = 1351
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 247/666 (37%), Positives = 357/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D + ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 RLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>gi|342319535|gb|EGU11483.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1343
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/607 (37%), Positives = 353/607 (58%), Gaps = 45/607 (7%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAG-HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
P ++LLP DK+A+I + ++M + +G ++ + +++G A+E E + +
Sbjct: 435 PFLQLLPVDKLALITIVEVMRMCGSGTFAADGMKTTRVVLNVGRAVENEHHAEALRDSLS 494
Query: 308 NYKRKKIIADTEE--VLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP------WGR 359
K ++ +A E ++ + + +R +S ++ ++L K EE W +
Sbjct: 495 TKKLQEELAKVESRGTINPDGTVTPRRQT---ESLGILWRRELAKREEDGDSTWHPNWTQ 551
Query: 360 DTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
+A++GS LV L+E A V+ HP S + +PAF H ++ + + TK
Sbjct: 552 TIRARVGSVLVSALMEIAEVERTIKHPKTGEQVS--EKQPAFSHAYQYM------RGTK- 602
Query: 416 YGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
G+++ +P V E LD+ + + ++PMLV PK W +N G YL + +MRT S +
Sbjct: 603 LGIIKLNPAVSERLDKDPLDITLHPRFLPMLVKPKPWLTWNSGAYLLHQTPMMRTKESEE 662
Query: 474 QQEALKSVTGN-CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL------VD 526
Q + L+ + N + +F LDTLG+ W++N++V + +W SG A + ++
Sbjct: 663 QVQYLQQASDNHTLDIIFSGLDTLGAVPWKINRKVFDTVVQVWNSGDAFADIPAAAQKLE 722
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+ IP+ +S D ++ VR+ + + HS RCD KL +AR E FY+
Sbjct: 723 IPTLEIPKGVMS-DPRARDNYRRRVRELMQQKRAAHSMRCDLNYKLEIARAFLGET-FYF 780
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGRAYP+ P+L+H+ D+ RG+L FAE +PLG+ GLRWLKIH++NL G +K
Sbjct: 781 PHNLDFRGRAYPIPPNLSHIGDDMSRGLLLFAESKPLGERGLRWLKIHVSNLM--GFDKA 838
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S D R AF HL ++FDSA+NP+ G +WW A+DP+QCLA CI L+ AL+S P
Sbjct: 839 SFDEREAFTMEHLEDVFDSADNPLEGRKWWTKADDPWQCLATCIELTNALRSEDPTKYEC 898
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
LPIHQDG+CNGLQHYAALG + A VNL G++PADVYS +A V EI+ RD
Sbjct: 899 GLPIHQDGTCNGLQHYAALGGDINGARQVNLDIGDRPADVYSGVAQMVQEIITRDVEAGV 958
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
+ AK+L ++ RK+VKQTVMT+VYGVTF+GA+ QI+R+L+++G + +R L+
Sbjct: 959 EE------AKLLDGKITRKVVKQTVMTTVYGVTFIGAKNQIERQLKDRGDVPAER-LYKC 1011
Query: 827 ACYAAKV 833
+ Y ++
Sbjct: 1012 SIYLGRL 1018
>gi|170097643|ref|XP_001880041.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645444|gb|EDR09692.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 960
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 253/682 (37%), Positives = 380/682 (55%), Gaps = 61/682 (8%)
Query: 181 RQVKQETEAWE----RMVDEYKELEAKMI--EKRLAPNLPHIKGLFLGWFGPLSEAIERE 234
RQ ET +E RM +E++ LE+ I E RL + ++ W L +E E
Sbjct: 1 RQKHLETSVYEIARERMKEEHEYLESLGINAENRLKDST--LQSWMWQWHQNLKSRLESE 58
Query: 235 QKM---------QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
K+ R + +P++ L+ AD+++ I + ++M L +G + ++ +A
Sbjct: 59 IKLIAAFEAKMLNRHDQTTQLLSPYLALVKADRLSYITILELMRLQGSGGVNHGMKTTRA 118
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+ IG A+E E + + +T + + + S + KR M A
Sbjct: 119 LIAIGKAVEMEYKAQ--MCRTNDIAIPTMTGHSTNFFSV--------LGYSNLQKRRMAA 168
Query: 346 QKLLKNEE--TKPWGRDTQAKLGSRLVELLIETAYV--QHPVNPADYSPPDVRPAFRHRF 401
+ +++ E T PW + ++K+G LVE L++ AYV Q S + +PAF H +
Sbjct: 169 ARHMQDGEAWTTPWSQAVRSKIGGILVECLMDVAYVRRQRDDQVTGKSVTEDQPAFYHAY 228
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + + TK G+++ +P V E L DR + + ++PMLVPPK W +GGYL
Sbjct: 229 EYV------RGTK-LGILKLNPAVAERLSTDRLRETIHPRHLPMLVPPKPWMHIRQGGYL 281
Query: 460 FLPSYVMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ + VMR S +Q+ L K++ M+ V LD LGST WR+NK V V+ +W SG
Sbjct: 282 YNKTSVMRFKESIEQETYLQKAIDDGKMELVLAGLDVLGSTPWRINKNVYEVVLKVWNSG 341
Query: 519 GNIA----GLVDRNDVLIPE---KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+ + D+ IPE K L +Q+ K S + K N HS+RC+ K
Sbjct: 342 ERMGKIPPAVYDQPAPEIPENYEKDLQARSVHLQRQK-SYTQGKANN---HSERCNVNYK 397
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
+ +AR +E Y PHNLDFRGRAYP+ PHL+H+ D+CRG+L FA+ +PLG+ GL WL
Sbjct: 398 IEIARAFLHDE-LYMPHNLDFRGRAYPIPPHLSHIGDDLCRGLLLFADAKPLGERGLWWL 456
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R +V L +I DSA NP++G RWW +DP+Q LAAC+
Sbjct: 457 KIHLANLY--GYDKASFQERADWVMERLDDIADSATNPLDGKRWWTKGDDPWQVLAACME 514
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L AL+S P + +S LP+HQDG+CNGLQHYAALG + + A VNL AG++P+DVYS +
Sbjct: 515 LHAALQSEDPLAYMSTLPVHQDGTCNGLQHYAALGGDAVGAKQVNLAAGDRPSDVYSYVG 574
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V + ++ D+ +AK+L ++ RK+VKQTVMT+VYGVTFVGAREQI+++L
Sbjct: 575 RLVDQQIEADAANGLE------MAKLLQGKITRKVVKQTVMTTVYGVTFVGAREQIEKQL 628
Query: 812 EEKGHITDDRQLFAAACYAAKV 833
+++ I D+ AA+ A KV
Sbjct: 629 KDRHDIPDELCWTAASYLAKKV 650
>gi|347838129|emb|CCD52701.1| similar to mitochondrial DNA-directed RNA polymerase [Botryotinia
fuckeliana]
Length = 1399
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/670 (34%), Positives = 359/670 (53%), Gaps = 49/670 (7%)
Query: 169 EMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGP 226
+M K R Q + E +A + +D +++ + L+ +L + W
Sbjct: 347 DMSKMSEEQQRAIQAQLEEDAVQAAIDRWRDESVNLTRLGLSTSLQSKSLGARMWKWHVA 406
Query: 227 LSEAI--------EREQKMQRTKKQ--KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L++ + E E K R+ + + Y P + LPA+K+A + + M + +
Sbjct: 407 LTDTLKEELKAIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGI 466
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL------SKEKELLR 330
D+ + + + + I ++E E + + +AD L + L
Sbjct: 467 DKGLTLSFSILQIAKSVEDESIFETIQQNMAKPSWSDSVADRVRTLRILKAKAHGNSELT 526
Query: 331 KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPA 386
NS S + ++ +E W +AK+GS L+E L++ A V HP
Sbjct: 527 DNTNSTSFSPDAFVSSQIRAHE----WSVGIKAKVGSFLLESLLKVAKVPVTMVHP--ET 580
Query: 387 DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLV 445
+ + ++PAF H + + ++ GV+ + +++E L R H +L ++PMLV
Sbjct: 581 NETVTQMQPAFSHAQQ-------YRMGRKLGVINANKVIVEQLKREPVHSLLAKHLPMLV 633
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRV 503
P+ W G++ GG+L P VMR Q A ++ + VF+ L+ LG WR+
Sbjct: 634 KPEPWTGFSSGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNILGEQSWRI 693
Query: 504 NKQVLSVLESIWVSGGNIAGLV-DRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQER 561
N+ V ++ W SG IA L D+ + P +P S D E ++W +V+K +
Sbjct: 694 NQPVFDIMLEAWNSGDAIANLAPDKPKLDYPPEPETSSDPLERRRWVTAVKKVENSKSSF 753
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRC +L +AR ++D+ FY+PHN+DFRGRAYP+ P+LNH+ +D CRG++ F G+
Sbjct: 754 HSQRCFQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGK 812
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
LG SGLRWLK+HLAN++ G +K S R F ++ EI+DSA NP+ G RWWL AED
Sbjct: 813 ALGNSGLRWLKVHLANVY--GFDKASLQEREEFASKNIDEIYDSATNPLGGKRWWLQAED 870
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
P+QCLAAC+ AL+S P S +S+LP+HQDG+CNGLQHYAALG + A VNL G+
Sbjct: 871 PWQCLAACMEFKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGD 930
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+PADVY+ +A V E + +D K AKIL ++ RK+VKQTVMT+VYGVTF+
Sbjct: 931 RPADVYTAVADLVKESIAKDLLAGQPK------AKILNGKITRKVVKQTVMTNVYGVTFI 984
Query: 802 GAREQIKRRL 811
GA+ Q++++L
Sbjct: 985 GAKAQVRKQL 994
>gi|45185910|ref|NP_983626.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|44981700|gb|AAS51450.1| ACR224Cp [Ashbya gossypii ATCC 10895]
gi|374106832|gb|AEY95741.1| FACR224Cp [Ashbya gossypii FDAG1]
Length = 1295
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/588 (38%), Positives = 337/588 (57%), Gaps = 51/588 (8%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+ + YAP+I L+ +K+ VI + +++ L G ++ +A + IG A+E E R
Sbjct: 438 RSRLEYAPYITLVNPEKMCVITILELLSLNSTGGVSEGMRTTRAVLAIGKAVEMEYR--- 494
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRK-RVNSLIKSKRVMEAQKLLKN---EETKP- 356
+E +L EK + ++ R NS K V A+ +N EE+K
Sbjct: 495 ----------------SEALLKSEKSIFKEVRANSNEFKKLVQRAKTTFRNTQIEESKVL 538
Query: 357 WGRDTQAKLGSRLVELLIETAYVQ-HPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
W + +AK+GS L+ +LI A V V+P + + PA H F+ +
Sbjct: 539 WPHNIKAKVGSLLISMLIHVAKVNVKGVDPVTNKTVYGKAPAICHTFQ-------YRMGS 591
Query: 415 RYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
+ GV++ + + DR + + ++PMLV P+ W +N GGYLF S ++R+ S
Sbjct: 592 KVGVLKLHRSLANQMSSDRLSANFQPQHLPMLVKPRPWTSWNSGGYLFTKSTLIRSKDSP 651
Query: 473 KQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND-V 530
+Q +K+VTG ++ V++ L+ LG T W VNK +L ++ +W SG + + D +
Sbjct: 652 EQSAYIKAVTGKGVVQNVYKGLNVLGETAWTVNKNMLHIISKVWNSGTEFLDIPPQQDEL 711
Query: 531 LIPEKPLSEDMTE-----VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
L+P KP ED +E +++WK R Q+ S RCD KL +AR E+ FY
Sbjct: 712 LLPAKPRGEDGSEPEPIVLKRWKQECRFLNAEYQKHRSMRCDANYKLEIARAFIGEK-FY 770
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGRAYP+ PH NHL +D+ R +L F EG+ LGK GLRWLKIH+ NL+ G++K
Sbjct: 771 FPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWEGKRLGKEGLRWLKIHMGNLY--GLDK 828
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+ + R+AF E HL +I DSAENP+NG WW A+ P+QCLA C+ ++ A K S+P +
Sbjct: 829 QTFEARVAFTEAHLEDIKDSAENPLNGKGWWKKADKPWQCLATCMEINNAYKLSNPEDYV 888
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V E +++ + +
Sbjct: 889 SHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDKPQDVYAFVAKLVTERLEKAALEG 948
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
Q L + + RK+VK+TVMT+VYGVTF+GA QI + L++
Sbjct: 949 DQNAAQ------LKNLITRKVVKRTVMTNVYGVTFIGATNQIDKELQD 990
>gi|14318482|ref|NP_116617.1| Rpo41p [Saccharomyces cerevisiae S288c]
gi|308153492|sp|P13433.2|RPOM_YEAST RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|836718|dbj|BAA09203.1| mithochondrial DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|285811859|tpg|DAA12404.1| TPA: Rpo41p [Saccharomyces cerevisiae S288c]
gi|349577881|dbj|GAA23048.1| K7_Rpo41p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299635|gb|EIW10728.1| Rpo41p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|1589360|prf||2210408E RNA polymerase
Length = 1351
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 247/666 (37%), Positives = 357/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D + ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 RLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>gi|154290650|ref|XP_001545917.1| hypothetical protein BC1G_15645 [Botryotinia fuckeliana B05.10]
Length = 1234
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 231/670 (34%), Positives = 358/670 (53%), Gaps = 49/670 (7%)
Query: 169 EMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGP 226
+M K R Q + E +A + +D +++ + L+ +L + W
Sbjct: 182 DMSKMSEEQQRAIQAQLEEDAVQAAIDRWRDESVNLTRLGLSTSLQSKSLGARMWKWHVA 241
Query: 227 LSEAI--------EREQKMQRTKKQ--KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L++ + E E K R+ + + Y P + LPA+K+A + + M + +
Sbjct: 242 LTDTLKEELKAIDEAEMKQHRSTEDISRCEYGPFLRYLPAEKLAALTIIAHMHALSSSGI 301
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL------SKEKELLR 330
D+ + + + + I ++E E + + +AD L + L
Sbjct: 302 DKGLTLSFSILQIAKSVEDESIFETIQQNMAKPSWSDSVADRVRTLRILKAKAHGNSELT 361
Query: 331 KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPA 386
NS S + ++ +E W +AK+GS L+E L++ A V HP
Sbjct: 362 DNTNSTSFSPDAFVSSQIRAHE----WSVGIKAKVGSFLLESLLKVAKVPVTMVHP--ET 415
Query: 387 DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPYVPMLV 445
+ + ++PAF H + + ++ GV+ + +++E L R H +L ++PMLV
Sbjct: 416 NETVTQMQPAFSHAQQ-------YRMGRKLGVINANKVIVEQLKREPVHSLLAKHLPMLV 468
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRV 503
P+ W G++ GG+L P VMR Q A ++ + VF+ L+ LG WR+
Sbjct: 469 KPEPWTGFSSGGFLKHPGRVMRVKNGDADQRNYADAAIDRGNLSTVFKGLNILGEQSWRI 528
Query: 504 NKQVLSVLESIWVSGGNIAGLV-DRNDVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQER 561
N+ V ++ W SG IA L D+ + P +P S D E +W +V+K +
Sbjct: 529 NQPVFDIMLEAWNSGDAIANLAPDKPKLDYPPEPETSSDPLERPRWVTAVKKVENSKSSF 588
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRC +L +AR ++D+ FY+PHN+DFRGRAYP+ P+LNH+ +D CRG++ F G+
Sbjct: 589 HSQRCFQNFQLEIARALRDKT-FYFPHNVDFRGRAYPIPPYLNHMGADHCRGLMMFGTGK 647
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
LG SGLRWLK+HLAN++ G +K S R F ++ EI+DSA NP+ G RWWL AED
Sbjct: 648 ALGNSGLRWLKVHLANVY--GFDKASLQEREEFASKNIDEIYDSATNPLGGKRWWLQAED 705
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
P+QCLAAC+ AL+S P S +S+LP+HQDG+CNGLQHYAALG + A VNL G+
Sbjct: 706 PWQCLAACMEFKNALESGDPASFVSYLPVHQDGTCNGLQHYAALGGDVWGAQQVNLEPGD 765
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+PADVY+ +A V E + +D K AKIL ++ RK+VKQTVMT+VYGVTF+
Sbjct: 766 RPADVYTAVADLVKESIAKDLLAGQPK------AKILNGKITRKVVKQTVMTNVYGVTFI 819
Query: 802 GAREQIKRRL 811
GA+ Q++++L
Sbjct: 820 GAKAQVRKQL 829
>gi|328869087|gb|EGG17465.1| DNA-dependent RNA polymerase [Dictyostelium fasciculatum]
Length = 1078
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/393 (48%), Positives = 264/393 (67%), Gaps = 14/393 (3%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PM+V P+ W N G YL P+++MRT+GS+ Q ++ S + K++E L+ LG
Sbjct: 517 LPMVVTPEPWDSPNNGCYLHYPTFIMRTNGSKLQTSSIISAD---LSKIYEGLNILGEVP 573
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKINQ 559
W +N+ VL ++ + W SGG I L R D +P SE + +K V+K K++N
Sbjct: 574 WNINRPVLDIILAAWESGGGIGDLPSRFDYELPLAAEYSESAEQRKKHAKLVKKVKQLNH 633
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
+ HS RCD KL V ++++ E FY+PHN+DFRGR+YP+ PHLNHL SD CR +L FAE
Sbjct: 634 DLHSLRCDLSYKLDVGKQLR-EHDFYFPHNVDFRGRSYPIPPHLNHLGSDFCRAMLTFAE 692
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG GL WLK+HLANL GV+K+S D R+AFV++H+ +++DSA+NP+NG+RWWL A
Sbjct: 693 KKPLGARGLMWLKVHLANL--SGVDKVSFDDRIAFVDSHMADVYDSADNPLNGARWWLAA 750
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
+ P+Q LA CI L+ A++S P + +S LP+HQDGSCNGLQHYAALG + A VNL+
Sbjct: 751 DKPWQALATCIELANAVRSGDPANFMSSLPLHQDGSCNGLQHYAALGGDEFGAFKVNLLP 810
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
KP DVYS +A V ++ D+ + H +AK L+ +V RK++KQTVMTSVYGVT
Sbjct: 811 SPKPQDVYSGVAQLVSATVEHDA---ANGHE---VAKALLGKVQRKIIKQTVMTSVYGVT 864
Query: 800 FVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
++GAR QI+ LEEK + DD +F A+ Y AK
Sbjct: 865 YIGARAQIQNALEEKYQMDDDF-VFQASSYLAK 896
>gi|443922649|gb|ELU42059.1| Rpo41p [Rhizoctonia solani AG-1 IA]
Length = 1371
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 237/619 (38%), Positives = 363/619 (58%), Gaps = 53/619 (8%)
Query: 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE------- 296
K+ +P + LL K+A+I + ++M L G ++ +A + +G A+E E
Sbjct: 435 KSPLSPFLRLLDTSKLAMITILELMRLHGTGGVSEGMKTSRALIAVGRAVETECLAVWSK 494
Query: 297 ---IRIHSFLEKTKNYKRKK------------IIADTEEVLSKEKELLRKRVNSLIKSKR 341
+++ + ++ K +K II + S+ E + +++ +
Sbjct: 495 KRGVKLGDVVSAPRSMKTRKGKPPKAKPEVIEIIEEERTGTSRASENPEQLAEAVVDT-- 552
Query: 342 VMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVRPAFRH 399
E+ + E + P W + + ++GS LV+ ++ +AY++ + N + + + +PAF H
Sbjct: 553 --ESPIVANMESSMPEWTQVVRVRVGSFLVDSVMNSAYIKRNGTNESGENLCEEQPAFMH 610
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGG 457
++ + K+ GV++ +P+V E + R + L P ++PMLV P+ W+ Y+KGG
Sbjct: 611 SYEYV-------RGKKLGVIKLNPVVGEKMARDPIRETLHPRHLPMLVKPQPWEDYDKGG 663
Query: 458 YLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
YL LP+ VMR S +Q LK S G+ + V+E LD LG T WR+N ++L+V+ +W
Sbjct: 664 YLKLPT-VMRIKDSPEQLSYLKHASAAGH-VDFVYECLDALGETPWRINDKILNVVLQVW 721
Query: 516 VSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
G +AG+ + D+ P KP +D + ++ + H +RC+ KL V
Sbjct: 722 NEGKGMAGIPPIQLDIEEPPKPEEDDPRARATYLLKLKSILTDKRNNHGERCNVNYKLEV 781
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR + DE FY PHNLDFRGRAYP+ PHLNH+ D+CRG+L FAE RPLG+ GLRWLKIH
Sbjct: 782 ARFVNDE--FYMPHNLDFRGRAYPIPPHLNHIGDDLCRGLLLFAERRPLGERGLRWLKIH 839
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
LAN+F G +K S D R+ FVE HL EI DSAENP+NG +WWL A+DP+QCL+ C+ L+E
Sbjct: 840 LANVF--GYDKASFDERVLFVEKHLEEIRDSAENPLNGKQWWLKADDPWQCLSTCMELTE 897
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
ALK P S+LP+HQDG+CNGLQHYAALG + A VNL G++PADVYS +A V
Sbjct: 898 ALKGPVPELYRSNLPVHQDGTCNGLQHYAALGGDAAGAQHVNLEQGDRPADVYSHVARMV 957
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
++ D+ + AK++ ++ RK+VKQTVMT+VYGVTF+GAR+QI+++L +
Sbjct: 958 DVVVDEDAALGIPE------AKVVQGKIARKVVKQTVMTTVYGVTFIGARDQIEKQLRDI 1011
Query: 815 GHITDDRQLFAAACYAAKV 833
++ + + A Y AK
Sbjct: 1012 VGLSREES-WPVAAYLAKT 1029
>gi|321262647|ref|XP_003196042.1| RPO41p [Cryptococcus gattii WM276]
gi|54112187|gb|AAV28789.1| RPO41p [Cryptococcus gattii]
gi|317462517|gb|ADV24255.1| RPO41p [Cryptococcus gattii WM276]
Length = 1180
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 235/656 (35%), Positives = 372/656 (56%), Gaps = 63/656 (9%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAP----------------HIELLPADKVAV 261
W G L+ +ER + ++ + KA+ AP ++ LLP DK+A+
Sbjct: 240 WLGELTVELERRIASMQAEIDALPESKASVAPPKYSATARMKPQVLLMYLSLLPVDKLAL 299
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIADTE 319
I + ++M + +G ++V++ V +G A+E E R + + +Y K I
Sbjct: 300 ITILEIMRMSGSGGIADGMKVLRGMVAVGKAVETEFRAETIKNVAGVDSYHWLKTIDPQT 359
Query: 320 EVLSKE--KELLRKRVNSLIKSKRVM--EAQKLL-------KNEETKPWGRDTQAKLGSR 368
+ S++ + +K ++KR+ EA+++L ++ T W R Q +GS
Sbjct: 360 QKPSRQLIGSVWKKIGEQANQAKRLGKGEAERILPPNHDDMQDIWTPAWSRMIQLGVGSE 419
Query: 369 LVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L++ V+ + +++PAF H ++ + K+ GV++ +P+V
Sbjct: 420 LVDALLKVTKVERTARDRNTGEIVMELQPAFTHAYEYV-------RGKKLGVIKLNPVVA 472
Query: 427 EGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
L + ++I ++PMLV P+ W +NKGGYL VMR S +QQ+ LK+ +
Sbjct: 473 ARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYKESLEQQKWLKAASEE 532
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSED 540
++ VF LD L ST W++N++V V+ W G IA + D+ PEKP S D
Sbjct: 533 GHLEPVFHGLDVLSSTPWQINRRVFDVVLESWNKGEPIADIPPSEDKAHYEFPEKPDSSD 592
Query: 541 MTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ ++ + + Q+R H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 593 QDPQVRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 650
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG++GL+WL+IHLAN++ G +K S R F +
Sbjct: 651 PIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVY--GYDKASFAERARFAQE 708
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
H +IFDSA++P++G RWWL AEDP+QCLA C L+ AL+S +P + S LP+HQDG+CN
Sbjct: 709 HEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPNPSAYESSLPVHQDGTCN 768
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V+++++ D + H ALL K
Sbjct: 769 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEEDKK---AGHDIALLIK- 824
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ + RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +F + Y AK
Sbjct: 825 --EPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE-HIFVVSSYIAKT 877
>gi|392563654|gb|EIW56833.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 1130
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 230/611 (37%), Positives = 347/611 (56%), Gaps = 43/611 (7%)
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEI 297
++ K+ +P ++LL +K+++I + ++M L +G ++ +A + +G A+E E
Sbjct: 245 RKGSKEDPQLSPFLKLLKPEKLSLITVLELMHLHGSGGVQDGMKTARALLAVGRAVEGE- 303
Query: 298 RIHSFLEKTKNYKRKKI-IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TK 355
K + K+ I + + S ++ + + ++RV + + +EE T
Sbjct: 304 ------HKAEMCKKNNISVPNANPARSGDQNVFTNLGYRDLHARRVTARKYMEDSEEWTS 357
Query: 356 PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP--PDVRPAFRHRFKTILKHPGQKTT 413
W + + K+GS LV+ L++ A VQ + + +PAF H ++ H
Sbjct: 358 DWSQLVRVKIGSFLVDCLMDVATVQRSIKDPRTGEKLTEEQPAFFHSYEYQRGH------ 411
Query: 414 KRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+ GV++ +P V E + D A+ + ++PMLV PK W YN GGYL+ ++ MR S
Sbjct: 412 -KLGVIKFNPAVAERMSKDPIAETLHPRHLPMLVKPKPWLSYNNGGYLYSRTWAMRFKES 470
Query: 472 RKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---VDR 527
R+Q+ L+ + ++ VF LD L ST WR+N+ V V+ +W SG A + V
Sbjct: 471 REQELYLRHASDAGRLELVFAGLDVLSSTPWRINRTVFDVVLKVWNSGERFAKIPPAVPD 530
Query: 528 NDVLIPEKPLSED----MTEVQKWK-WSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
+ D M +++ K W KA HS RC K+ +AR +
Sbjct: 531 EPEPERPPNMDFDNKAKMVYLERQKSWMQTKASN-----HSDRCSINYKVEIARAFLGDT 585
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
Y PHN+DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG GLRWLKIHLANL G
Sbjct: 586 -IYLPHNVDFRGRAYPIPPHLSHIGDDLSRGLLLFGEAKPLGARGLRWLKIHLANL--AG 642
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K S D R+ FV HL +I+DSAE P+ G RWW A+DP+QCLA CI L AL S P
Sbjct: 643 YDKASFDERVEFVHEHLDDIYDSAERPLEGGRWWTKADDPWQCLATCIELKAALTSPDPE 702
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
+ LP+HQDG+CNGLQHYAALG + + AA VNL A ++P+DVY+ +A V + ++RD
Sbjct: 703 AYECALPVHQDGTCNGLQHYAALGGDAVGAAQVNLAAADRPSDVYTYVAKMVEDQIQRDL 762
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
+D HP AK+L ++ RK+VKQTVMT+VYGVTFVGAR+QI+R+L+++G + ++
Sbjct: 763 KED---HP---FAKLLAGKISRKVVKQTVMTTVYGVTFVGARDQIERQLKDRGDVPIEQC 816
Query: 823 LFAAACYAAKV 833
AA+ A KV
Sbjct: 817 WLAASYLAKKV 827
>gi|440637074|gb|ELR06993.1| hypothetical protein GMDG_02315 [Geomyces destructans 20631-21]
Length = 1438
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 240/675 (35%), Positives = 365/675 (54%), Gaps = 71/675 (10%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIER--E 234
R RQ+K E ++ VD +++ A + + L +L + W EA+E+
Sbjct: 360 RLRQIKLEEDSIISAVDRWRKESASLSKMGLDTSLQTKSLGARMWKW----QEALEQRLN 415
Query: 235 QKMQRTKKQKAA--------------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
Q++Q K +A Y P + LP DK+A + + M + + D+ +
Sbjct: 416 QELQSIDKAEATPEKEKSQLDVERCIYGPFLRYLPTDKLAAVTILTSMQCLSSHGTDKGM 475
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ + IG +E E S E +N K+ + S K L RV IK+K
Sbjct: 476 PLASVIMSIGANLEDE----SITETIRNNTTKQGWQQLNKSASAGKGLGLARV---IKNK 528
Query: 341 RVME---------------AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385
R + A+ L ++ W +AK+GS L+ LI+TA V PV
Sbjct: 529 RTRQQLTDSLAKLVRGDSAAKHDLSDQWNTEWSATIKAKVGSYLLSALIDTAKV--PVTM 586
Query: 386 ADYSPPD----VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH-MLIPY 440
+ + ++PAF H + K K+ G++ + ++ L R H +L +
Sbjct: 587 ENTKTQELLTQIQPAFSHTHQY-------KIGKKTGMILANRALVASLKREPVHSLLAKH 639
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGS 498
+PM+ P+ W +N+GG++ P+ +R G K Q + ++ M+++F+ LD LG
Sbjct: 640 LPMVAEPEPWSEFNQGGFISHPAKAVRIKGGDKNQRQYQEAAIRRGDMEQMFKGLDVLGK 699
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKK 556
T W +N+ V + W +G IA L PE P S+D TE +KW S++ +
Sbjct: 700 TSWVINRPVFDTMLEAWNTGEAIANFPAEEPKLEYPPEPPASKDPTERRKWIRSLKTIEN 759
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
HS RC +L +AR ++ EE FY+PHNLDFRGRAYP+ P+LNH+ +D CRG+L+
Sbjct: 760 TRSGFHSARCFQNFQLEIARSLR-EEKFYFPHNLDFRGRAYPIPPYLNHMGADHCRGLLK 818
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F +GR LG++GL+WL++HLAN+ G +K S R + +H+ +I+DSA NP+NG RWW
Sbjct: 819 FGKGRELGEAGLKWLRVHLANIH--GHDKASLKEREQYTVDHIDDIYDSAMNPLNGRRWW 876
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
L AEDP+QCLAAC+ L AL S P +SHLP+HQDG+CNGLQHYAALG + A VN
Sbjct: 877 LDAEDPWQCLAACLELKNALDSGDPTKFVSHLPVHQDGTCNGLQHYAALGGDEWGARQVN 936
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L G++PADVY+ +A V+E M D K+ +K A L ++ RK+VKQTVMT+VY
Sbjct: 937 LEPGDRPADVYNAVAELVNEKMAVD-RKNGNK-----CAIWLEGKIKRKVVKQTVMTNVY 990
Query: 797 GVTFVGAREQIKRRL 811
GVT++GA+ Q++++L
Sbjct: 991 GVTYIGAQAQVRKQL 1005
>gi|270356866|gb|ACZ80653.1| putative DNA-dependent RNA polymerase RPO41 [Filobasidiella
depauperata]
Length = 1181
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 244/656 (37%), Positives = 366/656 (55%), Gaps = 66/656 (10%)
Query: 223 WFGPLSEAIEREQKMQRTKKQ-------KAAYAP----------------HIELLPADKV 259
W G L+ E EQ++ K Q KAA P ++ LLP DK+
Sbjct: 363 WLGELT--TELEQRLLSMKSQVEAMPESKAAVLPSKSSPTTGMKPQVLVMYLSLLPVDKL 420
Query: 260 AVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF--LEKTKNYKRKKIIAD 317
A+I + ++M + +G ++V++ V +G A+E E R + + +Y + I
Sbjct: 421 ALITILEIMRMAGSGGIIDGMKVLRGMVAVGKAVETEFRAETIKNVAGIDSYHWMRTIDP 480
Query: 318 TEEVLSKE--KELLRKRVNSLIKSKRVMEAQ---KLLKNEETKPWGRDTQAKLGSRLVEL 372
+ S++ + +K N +S+R + + + +K+ T W R Q +GS LV+
Sbjct: 481 QTQKPSRQLISSVWKKIGNQAGESQRHISSSSNSEDMKDLWTPAWSRMIQLGVGSELVDA 540
Query: 373 LIETAYVQHPVNPADYSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD 430
L++ A V+ A V +PAF H ++ + K GV++ +P+V E L
Sbjct: 541 LLKVAKVKREATNAVTGEKVVEEQPAFTHAYEYV-------RGKCLGVIKLNPVVAERLA 593
Query: 431 RSAKHMLI--PYVPMLVPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVT-GN 484
++I ++PMLVPP W+ ++ GGYL L VMR S +QQ+ LK+
Sbjct: 594 NDDIGVVIHPKHLPMLVPPLPWRAHDNGGYLMHSGLTVPVMRYKESLEQQKWLKAAAEAG 653
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV---DRNDVLIPEKPLSEDM 541
++ VF LD L ST W++N++V V+ W G IA + + D P+KP +
Sbjct: 654 HLEPVFHGLDVLSSTPWQINRKVFDVVLEAWNQGHAIADIPPSKEMADYEFPDKPEPANQ 713
Query: 542 TEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARR-MKDEEGFYYPHNLDFRGRAY 597
+ + V K KK+ ++ H++RC + +AR +KD FY PHN+DFRGRAY
Sbjct: 714 DPQLRLLY-VEKMKKVRAQQRKDHAERCKFNYNIEIARSYLKDT--FYLPHNMDFRGRAY 770
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PHL+ + D+CRG+L F +PLG +GL+WLKIHLAN++ G +K S R F +
Sbjct: 771 PIPPHLSPVGDDLCRGLLTFGTKKPLGLTGLKWLKIHLANVY--GYDKASFGERAKFAAD 828
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+ EIFDSAENP+ G+RWWL AEDP+QCLAAC L+ AL+SS P + S LP+HQDG+CN
Sbjct: 829 NEKEIFDSAENPLTGNRWWLKAEDPWQCLAACFELTAALRSSDPAAYESALPVHQDGTCN 888
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
G+QHYAALG + A AVNL AG++PAD+Y+ + V++++ D + H A L K
Sbjct: 889 GMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVIAEDQRQ---CHEVASLIK- 944
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
+ RK+VKQTVMT+VYGVTFVGAR+QI ++L +G I + +FA + Y AK
Sbjct: 945 --GPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLNTRGDIAPE-HIFAVSSYIAKT 997
>gi|395323448|gb|EJF55919.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 1273
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 229/625 (36%), Positives = 358/625 (57%), Gaps = 50/625 (8%)
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
+ E I K + TK ++ +P + +L +K+++I + +MM L +G ++ +A
Sbjct: 368 VEERILARMKRRSTKSEEILLSPFLRMLSPEKLSLITIMEMMNLHGSGGVQDGMKTARAL 427
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE---KELLRKRVNSLIKSKRVM 343
+ +G A+E E K + K+ I V + + + + ++RV
Sbjct: 428 LSVGRAVEAE-------HKAEICKKNNISIPVPAVNAPRAGVQNIFTGDGYKDLYARRVT 480
Query: 344 EAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFR 398
A+ + EE T W + + K+GS L++ +++ A V Q P ++ + +PAF
Sbjct: 481 AAKYMEDAEEWTSDWSQLIRVKVGSFLLDCIMDVATVSRTIQDPRTGEKFT--EEQPAFS 538
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKG 456
H ++ + ++ GV++ +P V + + D A + ++PMLV PK W YN G
Sbjct: 539 HSYEY-------QRGRKLGVIKFNPAVADRMSKDPIADTLHPRHLPMLVKPKPWLSYNNG 591
Query: 457 GYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GYL+ S+ MR SR+Q+ L+ + ++ VF LD LGST W++N++V V+ +W
Sbjct: 592 GYLYSRSWAMRFKDSREQEIYLRHASEAGRLELVFAGLDVLGSTPWQINRRVFDVVLQVW 651
Query: 516 VSGGNIA----GLVDRNDVLIPEKPLSEDMTEV----QKWKWSVRKAKKINQERHSQRCD 567
SG A + D + + PE +++ +V ++ +W KA HS RC
Sbjct: 652 NSGERFAKIPPAIPDEPEPVRPENMDTDNKAKVVYLERQRQWMQNKAAN-----HSDRCS 706
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
K+ +AR + Y PHN+DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG G
Sbjct: 707 VNYKVEIARAFLGDT-IYLPHNVDFRGRAYPIPPHLSHIGDDLSRGLLIFEEKKPLGTRG 765
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKIHLANL+ G +K S D R+ +V HL +IFDSA+ P+ G RWW A+DP+QCLA
Sbjct: 766 LRWLKIHLANLY--GYDKASFDERVEYVHKHLEDIFDSADKPLEGRRWWTKADDPWQCLA 823
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C+ L+ AL+S P + LP+HQDG+CNGLQHYAALG + AA VNL A ++P+DVY
Sbjct: 824 TCMELTSALRSPDPEAYECGLPVHQDGTCNGLQHYAALGGDAQGAAQVNLAAADRPSDVY 883
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ D KD +AK+L +V RK+VKQTVMT+VYGVT+VGAR+QI
Sbjct: 884 TYVANMVEKQIEEDIKKDDP------IAKLLEGKVSRKVVKQTVMTTVYGVTYVGARDQI 937
Query: 808 KRRLEEKGHITDDRQLFAAACYAAK 832
+R+L+++G I + ++A+ Y AK
Sbjct: 938 ERQLKDRGDIPAE-MCWSASAYLAK 961
>gi|358055118|dbj|GAA98887.1| hypothetical protein E5Q_05575 [Mixia osmundae IAM 14324]
Length = 1375
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 245/682 (35%), Positives = 367/682 (53%), Gaps = 76/682 (11%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKM---IEKRLAPNLPHIKGLFLGWFGPLSEAIERE 234
L RQ + E A + V +++ KM + +R++ ++ L GW L+ + R
Sbjct: 396 LYERQRQLEDSAMQAAVVQFQTEREKMNTEVAQRVSMQQRSLQSLMTGWIEELTVVLTRV 455
Query: 235 QKMQR--------TKKQ------------KAAYAPHIELLPADKVA-----VIVMHKMMG 269
Q+ R T K+ +AA + LLP DK+A V++ H G
Sbjct: 456 QEQMRLLIDSDAVTTKETVIEGCKIFATDRAADDIYFLLLPPDKLAYLTVSVLLSHNTPG 515
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELL 329
M RCV MAI + + + + K + R ++ V E
Sbjct: 516 AAMQ-KVTRCV----------MAIGKAVEVEHYAMKLQESHRLELADALHAVREAEA--- 561
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKP-----WGRDTQAKLGSRLVELLIETAYVQHPVN 384
N + +S+ V + ++ + W T+A++G+ + L ETA +Q
Sbjct: 562 ---ANGVTESRVVARIWRDVRARQGDSSREVFWSHQTRARIGAMCLHFLCETAKIQRSAV 618
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIP-YVP 442
+++PAF +T GQK G+++ + V E LD+ S L P Y+P
Sbjct: 619 IDGQEIIEIQPAF---VQTYQFSAGQKI----GIIKFNAAVTERLDKDSMLSTLTPRYLP 671
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKW 501
MLVPP+ W +NKG YL P V+R S +Q LK + + + + F +LD LGST W
Sbjct: 672 MLVPPRPWTAHNKGAYLMHPVSVLRIKDSMEQTAYLKQASDSGQLDEAFASLDYLGSTAW 731
Query: 502 RVNKQVLSVLESIWVSGGNIAGL--VD-RNDVLIPEKPLSEDMTEVQK--WKWSVRKAKK 556
VN+ V V+ S W SG I G+ D N + PE P + Q+ + V+ A+
Sbjct: 732 NVNRDVFGVIASAWNSGLTIGGIPVADPLNAIKDPEPPAGGFTSPRQQDTHRAEVKAAEM 791
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ +S RCD KL +AR +E FY+PHN+DFRGRAYP+ P+L+H+ D+CRG+L
Sbjct: 792 QRRQHYSIRCDLNYKLEIARAYLNER-FYFPHNMDFRGRAYPIPPNLSHIGDDLCRGLLT 850
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
FAE + LG +GLRWL +HLAN+F G +K S R F ++HL +IFDSA+ P++G+RWW
Sbjct: 851 FAERKRLGATGLRWLHVHLANMF--GFDKASLAAREQFAKDHLTDIFDSADKPLDGARWW 908
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
L AE+P+QCLA C LS+AL+S P S LP+ QDGSCNGLQHYAALG + A VN
Sbjct: 909 LKAEEPWQCLATCFELSKALRSPVPEDYRSSLPVQQDGSCNGLQHYAALGGDMAGAGQVN 968
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRD-SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
L+AG+ P+DVY+ + V +++D +NK+ LA L ++ RK++KQTVMT+V
Sbjct: 969 LIAGDAPSDVYTGVCNLVIGAVEQDAANKNE-------LALHLKGKITRKVIKQTVMTTV 1021
Query: 796 YGVTFVGAREQIKRRLEEKGHI 817
YGVT++GA QI+R+L+++G +
Sbjct: 1022 YGVTYIGASRQIERQLKDRGDV 1043
>gi|340960508|gb|EGS21689.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1394
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 242/670 (36%), Positives = 364/670 (54%), Gaps = 63/670 (9%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQ- 235
R Q + E + E + +++E + L P + P + W L I EQ
Sbjct: 352 REFQSRLERDVLEAALQKWREDNESLASMGLNPQISAPSLSSKLYQWHQALERRIAEEQA 411
Query: 236 ---------KMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K + Y P + A ++A + ++ L+ D+ V A
Sbjct: 412 KVEASENVPKKSAEDLDRCLYGPLLLQGSATRLAAATIISILSLLSLHGADKGVAASLAV 471
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS---KRVM 343
+ E++IR EKTK + + TE K + L+R + N +K+ K++
Sbjct: 472 QQVAKVAEEDIRFQ-IAEKTKKLPKHQ----TELQKRKARRLIRVKGNGSLKTTDKKQLG 526
Query: 344 EAQ-KLLKNEETKP-------WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPP 391
A L E P W +AK+G+ L+ ++ETA + HPV
Sbjct: 527 VATLPLATTGEMAPAITENTRWPTAIRAKVGALLLTAMMETAKIMVVRDHPVTKEKVH-- 584
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKW 450
++PAF H + + K+ G+++ +P ++E L R + +L ++PMLV P+ W
Sbjct: 585 QLQPAFSHAMQL-------RKGKKVGIIQANPELVEILKREPRAELLARHLPMLVEPEPW 637
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
++KGG+L S ++R +Q+ A ++ M+++ LD LG T WR+N++V
Sbjct: 638 TKFDKGGFLECQSPLIRLKNHEIEQKIYAEAAIERGDMEQMMRGLDVLGKTAWRINRKVF 697
Query: 509 SVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---H 562
V+ ++W G NI L ++ IP +P S D ++K W +R+ K I E+ H
Sbjct: 698 DVMLTVWNEGIAFANIPAL--HPNIPIPPEPDSSD-DPMKKRIW-MRQVKAIQNEKSGMH 753
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
S RC +L +AR D+ FY+PHNLDFRGRAYP+ P+LNH+ +D RG+L FA+G+P
Sbjct: 754 SVRCFMNFQLEIARAFIDQT-FYFPHNLDFRGRAYPLPPYLNHMGADHMRGMLLFAKGKP 812
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LG++GLRWLKIHLAN++ G +K S D R F +++L I DSA NP+ G RWWL EDP
Sbjct: 813 LGENGLRWLKIHLANVY--GYDKASLDDREKFADDNLANIMDSASNPLGGKRWWLQGEDP 870
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
+QCLA C L+ AL+S P +SHLP+HQDG+CNGLQHYAALG +T A VNL+ GEK
Sbjct: 871 WQCLATCFELAAALQSPDPTQFVSHLPVHQDGTCNGLQHYAALGGDTWGAQQVNLIPGEK 930
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVYS +A V E++ +D+ AK L ++ RK+VKQTVMT+VYGVTFVG
Sbjct: 931 PADVYSAVAQLVQEMVTKDAAAGNE------FAKALDGKITRKVVKQTVMTNVYGVTFVG 984
Query: 803 AREQIKRRLE 812
A+ Q++++L+
Sbjct: 985 AKRQVQKQLD 994
>gi|172490|gb|AAA35007.1| mitochondrial RNA polymerase [Saccharomyces cerevisiae]
Length = 1351
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 245/666 (36%), Positives = 355/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D + ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAE + G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAEKSLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 RLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>gi|409043331|gb|EKM52814.1| hypothetical protein PHACADRAFT_261459 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1324
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 236/679 (34%), Positives = 379/679 (55%), Gaps = 57/679 (8%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEK----RLAPNLPHIKGLFLGWFGPLSEAIERE-- 234
RQ E ++ V+ +K EA+M E+ + + ++G W L + E
Sbjct: 373 RQKLLEESVYDVAVERWKH-EAEMFEELGLGKKGLDSTDLRGWLWQWHQKLQMRVAGEIQ 431
Query: 235 ----QKMQRTKKQKAA-YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+M T++ + +P + L+ +K+++I + ++M L AG ++ +A + +
Sbjct: 432 NLIKAEMALTERNAGSRLSPFLTLIKPEKLSLITILELMHLQGAGGVSDGMKTARALISV 491
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+E +E +K IA +++ + +R + A+K +
Sbjct: 492 GKAVE--------IEYKAEMCKKNNIAVPSPATQRQQSFFSNLGYRALHERR-LAARKYM 542
Query: 350 KNEE--TKPWGRDTQAKLGSRLVELLIETAYVQH-PVNPADYSPPDVRPAFRHRFKTILK 406
++ E T W + + ++GS LV+ L++ A V ++ + +PAF H ++ +
Sbjct: 543 EDYEEWTSEWTQTIRVRVGSFLVDALMDVATVSRTAIDKHGELHTEEQPAFYHSYEYLR- 601
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSY 464
GQK GV++ +P+V + L + + L P ++PMLV PK W +++GGYL+ +
Sbjct: 602 --GQK----LGVIKLNPVVADRLAKDQVRETLHPRHLPMLVRPKPWLSHDQGGYLYNKTS 655
Query: 465 VMRTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA- 522
VMR SR+QQ ++ + ++ V+ +LD LG T W++N+ + V+ +W SG +
Sbjct: 656 VMRYKDSREQQSYVREASSQGALELVYASLDVLGGTPWKINRHIFDVVLKVWNSGERLGK 715
Query: 523 ---GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK----AKKINQERHSQRCDTELKLSVA 575
+ D+ + PEKP D K + R +KK N HS RC+T K+ +A
Sbjct: 716 IPPAMYDQPE---PEKPADHDTDPKAKVAYLQRHKAYMSKKANN--HSDRCNTNYKIEIA 770
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R + Y PHN+DFRGRAYP+ P+LNHL D+ RG+L+FAE +PLG+ GLRW+KIHL
Sbjct: 771 RAFLGDT-VYLPHNVDFRGRAYPIPPNLNHLGDDLSRGLLKFAEAKPLGERGLRWMKIHL 829
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G +K S D R+ FV HL +IFDSA NP+ G WW A+DP+QCLA C+ + A
Sbjct: 830 ANLY--GYDKASFDERVVFVHEHLDDIFDSATNPLEGRGWWKKADDPWQCLATCMEIRAA 887
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+S P S LP+HQDG+CNGLQHYAALG + A VNL ++P+DVY+ +A V
Sbjct: 888 LESPEPTEYASSLPVHQDGTCNGLQHYAALGGDAQGAQQVNLSVTDRPSDVYTHVATMVE 947
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
++ +D+ D AK+L ++ RK+VKQTVMT+VYGVTF+GAR+QI+R+L ++
Sbjct: 948 SVLAQDAKND------LRYAKMLSGKIARKVVKQTVMTTVYGVTFIGARDQIERQLRDRR 1001
Query: 816 HITDDRQLFAAACYAAKVS 834
+ + + + AA Y AK++
Sbjct: 1002 DLPAE-ECWLAAAYLAKIT 1019
>gi|390596373|gb|EIN05775.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 968
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 228/625 (36%), Positives = 360/625 (57%), Gaps = 43/625 (6%)
Query: 227 LSEAIEREQKMQRTKKQKAA-YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+ E I++E+ M + +K P + LL K+++I + ++M L +G + ++ +A
Sbjct: 89 IQELIKQEEIMTAKRSRKDERLGPFLSLLKPSKLSLITILELMHLSGSGGVNSGMKTARA 148
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKI--------IADTEEVLSKEKELLRKRVNSLI 337
+ +G A+E E K + +R I A E+ K++ +
Sbjct: 149 LLTVGKAVELEY-------KAEMCRRNDIQIPQASSTFASKSEIEKKQRGFFTGLGYREL 201
Query: 338 KSKRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVR 394
++RV A+ + + EE T W ++ + ++GS LV+ L++ A V+ +
Sbjct: 202 HARRVAAARYVQEAEEWTSEWTQELKVRVGSFLVDTLMDVATVERTAINKVTGQEVTEEH 261
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIP-YVPMLVPPKKWKG 452
PAF H ++ + H + G++ +P+V E + + + + L P ++PMLV PK W
Sbjct: 262 PAFYHSYEYMKGH-------KLGIIRLNPVVAERMAKDNLRDTLHPRHLPMLVKPKPWLD 314
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVL 511
+N+GGY++ + MR SR+Q+ L + ++ V+ LD LGST W +N+ V ++
Sbjct: 315 HNQGGYIYNKTSAMRFKESREQEVYLAHASAQGHVELVYAGLDVLGSTPWVINRDVFDIV 374
Query: 512 ESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCD 567
+W SG A + D PE+P E T+ K + +AK+ Q++ HS+RC+
Sbjct: 375 LQVWNSGERFAKIPPAAFDGPEPERP-GEGETDPHKKTIYITRAKQYAQDKASNHSERCN 433
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
K+ +AR + FY PHNLDFRGRAYP+ PHLNH+ D+ RG+L+F E RPLG+ G
Sbjct: 434 VNYKIEIARAFLGDT-FYLPHNLDFRGRAYPIPPHLNHIGDDLARGLLKFGESRPLGERG 492
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKIHLANL+ G +K S D R+ +V + +I+DSA P++G RWW A+DP+QCLA
Sbjct: 493 LRWLKIHLANLY--GYDKASFDERVNWVHERMEQIYDSATKPLDGQRWWTHADDPWQCLA 550
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L AL+S P + S LP+HQDG+CNGLQHYAALG +++ AA VNL ++P+DVY
Sbjct: 551 TCKELHAALESPDPLAFESSLPVHQDGTCNGLQHYAALGGDSIGAAQVNLAVTDRPSDVY 610
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V ++ D K P AK+L ++ RK+VKQTVMT+VYGVTF+GAR+Q+
Sbjct: 611 TYVANMVEREIEDDIKK-----PDNKWAKMLQGKIARKVVKQTVMTTVYGVTFIGARDQL 665
Query: 808 KRRLEEKGHITDDRQLFAAACYAAK 832
+++L+++G I + + AA Y AK
Sbjct: 666 EKQLKDRGDIPVE-DCWHAASYLAK 689
>gi|270358663|gb|ACZ81452.1| Rpo41 [Cryptococcus heveanensis]
Length = 1256
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 222/617 (35%), Positives = 354/617 (57%), Gaps = 42/617 (6%)
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR- 298
+K +++ +++LLP +K+A+I + ++M + +G ++ ++ + +G A+E E R
Sbjct: 311 SKMKRSVLVMYLQLLPVEKLALITILEVMRMSGSGGISDGMKALRGMLAVGKAVETEFRA 370
Query: 299 --IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE--- 353
I + ++ + I T++ + + +R+ +K+ ++ E L
Sbjct: 371 ETIKNIAGVDSHHWLRTIDPQTQKPSRQLVGSVWRRIGEQVKTSKLEETSDSLSTATHDD 430
Query: 354 -----TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--RPAFRHRFKTILK 406
T PW + Q +GS LV+ L++ A V+ + V +PAF H ++ I
Sbjct: 431 LHQVWTPPWSQMAQLGVGSELVDALLKVAKVERVGRNPETGEEVVEEQPAFTHAYEYI-- 488
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSY 464
K+ GV++ +P+V L R + ++I ++PMLV PK W +N GGYL
Sbjct: 489 -----RGKKLGVIKHNPVVAARLARDSVGVVIHPKHLPMLVEPKPWTSHNNGGYLLHSVP 543
Query: 465 VMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR S +QQ LK+ + ++ VF LD L ST W +N++V V+ ++W SG IA
Sbjct: 544 IMRYKESAEQQSYLKTASEQGHLEPVFHGLDVLSSTAWSINRKVFDVILNVWNSGEAIAD 603
Query: 524 LV---DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI---NQERHSQRCDTELKLSVARR 577
+ +++ +PEKP D + QK + + K + ++ H++RC L +AR
Sbjct: 604 IPASEEKSTYDVPEKPDPRDQ-DPQKRSLYIERMKSVMAAQRKDHAERCKFNYNLEIARS 662
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
++ FY PHN+DFRGRAYP+ PHL+ + D+CRG+L F + LG++GL+WL IHLAN
Sbjct: 663 YLNDV-FYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGNKKALGETGLKWLHIHLAN 721
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK 697
++ G +K S + R F + H +IFDSA+NP++G RWWL AEDP+QCLA C ++ AL+
Sbjct: 722 VY--GFDKASFEERARFAQEHEADIFDSADNPLDGKRWWLQAEDPWQCLATCFEIAAALR 779
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
SS P S LPIHQDG+CNG+QHYAALG + A AVNL G++PAD+Y+ + V+++
Sbjct: 780 SSDPTQYESSLPIHQDGTCNGMQHYAALGGDVRGAKAVNLEHGDRPADIYTGVVNIVNKV 839
Query: 758 MKRDSNKDPSKHPQALLAKILIDQ-VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ D K L +LI + + RK+VKQTVMT+VYGVTFVGAREQI ++L +G
Sbjct: 840 IEEDQKK-------GLDVALLIKKPLGRKVVKQTVMTTVYGVTFVGAREQIAKQLTARGD 892
Query: 817 ITDDRQLFAAACYAAKV 833
+ +F + Y AK
Sbjct: 893 FAQE-HVFLVSGYIAKT 908
>gi|403216073|emb|CCK70571.1| hypothetical protein KNAG_0E03120 [Kazachstania naganishii CBS
8797]
Length = 1276
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/690 (34%), Positives = 374/690 (54%), Gaps = 68/690 (9%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW 223
+ E+ + ++R L R E W+ ++ K+ I+K L L + G
Sbjct: 340 INEFNQDRQRALEL---RATDAAKERWKHDFEDAKQRGDLAIQKSLNAKLWK---WYSGM 393
Query: 224 FGPLSEAIEREQKMQRTKKQ----KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
L + IE ++MQ T + +A YAP++ L+ +K+ VI + +++ L G
Sbjct: 394 LPILKKEIELCRQMQATAAKGHSTRAEYAPYLTLVTPEKMCVITILEILKLNSTGGITEG 453
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLE-KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIK 338
++ +A + +G A+E E R L+ +++ +K ++K+ +K V S
Sbjct: 454 MRTARAVISVGQAVEMEFRSEQLLKNESRMFKE----------VNKKSNTFKKIVRSAKS 503
Query: 339 SKRVMEA--QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-- 394
+ R ME QKLL W + +AK+GS LV +LI A V + + P +
Sbjct: 504 AFRAMEIEKQKLL-------WPQAIRAKVGSILVSMLIRIADVT-----VEGTDPITKEK 551
Query: 395 -----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPP 447
PAF H ++ H G K G+V+ ++ L+ R + +PMLV P
Sbjct: 552 VYGKTPAFSHSYQY---HNGVK----LGIVKIHKSLINQLNGERLVASVQPQLLPMLVKP 604
Query: 448 KKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQ 506
++WK + GGY + S ++R+ +Q L++ + N + KV++ L+ LG+T W VN+
Sbjct: 605 REWKNWKSGGYFYSQSTLVRSRDCPEQLAYLEAASNSNAIDKVYDGLNVLGNTAWTVNRN 664
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +V+ +W G + ++L +P P D + +W+ R S
Sbjct: 665 IFNVVSKVWNEGKPFLEIPGTQEILELLPPPPKGSDPAVINEWRTKNRYLSNEYSANRSM 724
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD KL +AR E+ FY+PHN+DFRGRAYP+ PH NHL +D+ RG+L F +G+ LG
Sbjct: 725 RCDLNYKLEIARAFLGEK-FYFPHNVDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKKLG 783
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
GL+WLK+HL+NL+ GV+K+S D R+AF+E+ L E+ DSAE+P+NG WW A+ P+Q
Sbjct: 784 SLGLKWLKVHLSNLY--GVDKVSLDDRVAFIESQLDEVKDSAEDPLNGRGWWKKADKPWQ 841
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
LA C+ L+EALK +P +SH P+HQDG+CNGLQHYAALG + A VNL+ G P
Sbjct: 842 ALATCMELNEALKLDNPEDFVSHQPVHQDGTCNGLQHYAALGGDMEGAEQVNLIPGAMPK 901
Query: 745 DVYSEIA--VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
DVYS +A VR + + DP +AK L+D+++RK+VKQTVMT VYGVT VG
Sbjct: 902 DVYSHVANIVRSRLQVLVEQENDP-------MAKFLVDKLNRKVVKQTVMTHVYGVTLVG 954
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAK 832
A QI +++ + + +D R+ + Y AK
Sbjct: 955 ATLQIDKQIGD--YFSDHRESLKYSKYLAK 982
>gi|410077803|ref|XP_003956483.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
gi|372463067|emb|CCF57348.1| hypothetical protein KAFR_0C03560 [Kazachstania africana CBS 2517]
Length = 1284
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/611 (37%), Positives = 344/611 (56%), Gaps = 47/611 (7%)
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
++++ + ++ YAP++ L+ +K+ VI + +++ L G ++ +A + +G AI
Sbjct: 415 KERLPKADSKRLEYAPYLALVNPEKMCVIAILEILKLNSTGGIIEGMRTARALISVGKAI 474
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E E R L K ++Y I D + + K LRK S SK +E K++
Sbjct: 475 EMEFRSEQLL-KNESY----IFKDVNKKSPEFKTYLRKAKKSFRSSK--IEQAKIV---- 523
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPP-DVRPAFRHRFKTILKHPGQK 411
W + +AK+GS LV +LI A V+ ++P + PAF H ++ H G K
Sbjct: 524 ---WPQSIRAKVGSILVSILIHVAKVEIEGIDPITHQKIFGTAPAFSHSYQY---HNGSK 577
Query: 412 TTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
GV+ +++ LD R + +PMLV P+ W + GGY + S ++R+
Sbjct: 578 ----LGVIRIHKSLVQQLDGERLMASVQPQLLPMLVEPRPWVNWKSGGYYYTQSTLVRSK 633
Query: 470 GSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN---IAGLV 525
S +Q L++ + + KV++ L+ LG T W VN+++ ++ +W GG+ I G+
Sbjct: 634 DSPEQIAYLEAASNVQALDKVYDGLNVLGDTAWTVNRRIFEIISKVWNKGGSFLEIPGIQ 693
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
++ L P P + D + + +WK + S RCD KL +AR E FY
Sbjct: 694 QESEFL-PPPPKNADPSVINEWKNKNKILANKYSSNRSMRCDLNYKLEIARAFLGER-FY 751
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHNLDFRGRAYP+ PH NHL +D+ RG+L F +G+ LGK GL WLK+HL+NL+ GV+K
Sbjct: 752 FPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGKEGLSWLKVHLSNLY--GVDK 809
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSR-WWLTAEDPFQCLAACINLSEALKSSSPHSV 704
+ R F+++HL EI DSAENP+NG WW A+ P+Q LA CI L+EALK +P
Sbjct: 810 VPLLERENFIDDHLEEIKDSAENPLNGKYLWWQKADKPWQALATCIELNEALKLENPEDF 869
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISH P+HQDG+CNGLQHYAALG + A VNLV GEKP DVY+ +A V ++ K
Sbjct: 870 ISHQPVHQDGTCNGLQHYAALGGDIEGAQQVNLVPGEKPNDVYAHVAKIVQGKLRETLQK 929
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD---- 820
DP+ +AK L+D+++RK+VKQTVMT VYGVT +GA QI ++L + + D
Sbjct: 930 DPNDE----MAKFLVDKLNRKVVKQTVMTHVYGVTLLGATLQIDKQLNDLFDDSSDSMKY 985
Query: 821 -----RQLFAA 826
R +FAA
Sbjct: 986 SKYLARHVFAA 996
>gi|50292665|ref|XP_448765.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528077|emb|CAG61728.1| unnamed protein product [Candida glabrata]
Length = 1326
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 245/666 (36%), Positives = 355/666 (53%), Gaps = 64/666 (9%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK 236
+L RR + E W+ +E K IEK L L W+ + +++E K
Sbjct: 398 MLERRATEAAKERWKFEFEEAKARGDISIEKSLNSRLWE-------WYSAMLPLVKKEAK 450
Query: 237 -----------MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
R ++ YAP+ L+ +K+ VI + +++ L G ++ +A
Sbjct: 451 KCIEELNNSKSSSRKLSSRSEYAPYFTLVNPEKMCVITILELLKLNSTGGVIDGMRTARA 510
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+ + AIE E R L ++N K I +K+ ++ V S ++ R ME
Sbjct: 511 VISVSKAIELEFRSEQLL-NSENQTFKDI--------NKKSHEFKRYVQSAKRTFRSMEI 561
Query: 346 QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRF 401
+K W + +AK+GS L+ LI A V PV PAF H
Sbjct: 562 EK-----SRIIWPQTVRAKIGSTLISFLIHVAKVSVEGTDPVTKEKVYGD--APAFAH-- 612
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
T + H G K G+++ ++ L+ R + +PMLV P+ WKG+ GGYL
Sbjct: 613 -TYVYHNGSK----LGIIKIHKALINRLNGERLLASVQPQLLPMLVKPRPWKGWKSGGYL 667
Query: 460 FLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ S ++R+ S +Q L++V+ + K+++ L+ LG T W VN++V V+ +W G
Sbjct: 668 YTQSILVRSRDSPEQLAYLQAVSDSGAIDKIYDGLNVLGETAWTVNRKVFDVVSKVWNEG 727
Query: 519 GN---IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
N I G+ D L+P P S D T +++WK ++ S RCD KL +A
Sbjct: 728 TNFLEIPGIQDELK-LLPPPPRSSDPTVIREWKLKNKELANKYSSDKSVRCDLNYKLEIA 786
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R E+ FY+PHNLDFRGRAYP+ PH NHL +D+ R +L F +G+ LG GL WLK+HL
Sbjct: 787 RAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDLSRSLLIFWKGKRLGPDGLNWLKVHL 845
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
+NLF GV+K+ + R+ F E H+ +I DSAENP+NG WW TA+ P+Q LA C+ L+EA
Sbjct: 846 SNLF--GVDKVPLEDRVKFTECHIEDIKDSAENPLNGKGWWKTADKPWQALATCMELNEA 903
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
LK +P ISH P+HQDG+CNGLQHY+ALG + A VNLV EKP DVYS +A V
Sbjct: 904 LKLDNPEDYISHQPVHQDGTCNGLQHYSALGGDVEGATQVNLVPSEKPQDVYSFVAKLVE 963
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+++ + K K A IL +V RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 964 ARLEKAAAKGDEK------ALILKGKVSRKVVKQTVMTNVYGVTYVGATFQIAKQLTA-- 1015
Query: 816 HITDDR 821
I DDR
Sbjct: 1016 -IFDDR 1020
>gi|296806639|ref|XP_002844119.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
gi|238845421|gb|EEQ35083.1| DNA-directed RNA polymerase [Arthroderma otae CBS 113480]
Length = 1375
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 238/681 (34%), Positives = 378/681 (55%), Gaps = 61/681 (8%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQE--TEAWERMVDEYKEL--EAKMIEKRLAP 211
K L+ R E RE+ +++ LR+ Q++++ T A ER E + + + + +E RL
Sbjct: 350 KNLWGRTP--EERELNRKR---LRQEQLEKDSLTSAIERWRKESEGVIGQRRQVEARLNA 404
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 405 ---FMYQWYQGVLGKIKEELELAKRSESKKKLTPEESERYEYIPFLLAIGPSKLAAVTIL 461
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSK 324
++G + + D+ +++ HIG A++ E I + + N A+TE E
Sbjct: 462 SVLGSIGSSGMDKGIKLSSLFTHIGRAVKDEYIIETTRQSAVNE------AETENEAYYL 515
Query: 325 EKELLRKRV-NSLIKSKRVMEAQKLLKNEETKP---WGRDTQAKLGSRLVELLIETAYVQ 380
K + +V NS K + M+ K+ E +P W T+ K+G+ L +L TA +
Sbjct: 516 NKTFRQMKVYNSTGKFRSYMQ-----KHTEGRPPVHWPTSTEIKIGALLSSMLFSTAEI- 569
Query: 381 HPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKH 435
P + D +VR PAF+H ++ H G V+ V+E L + + +
Sbjct: 570 -PTSHKDPVTEEVRYVNEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGN 621
Query: 436 MLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALD 494
+L ++PM+ PP+ W +GG+L P V+RT Q + L++ + ++++++ L
Sbjct: 622 LLAKHLPMVSPPRPWVSNTQGGFLTQPVQVVRTRHDDAQNQYLQAASERGDLEELYKGLT 681
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRK 553
LG T W++N+ V V+ W SG +A +V N ++ PEKP ++D V+ + + +
Sbjct: 682 ILGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLNITEPEKPDADDREAVKAYYRAKTR 741
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
A HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG
Sbjct: 742 ADNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRG 800
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L F+EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G
Sbjct: 801 LLLFSEGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFSIDHVDDILDSANNGLKGR 858
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
RWWL A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A
Sbjct: 859 RWWLKAADPFQCLAACVELKNALSLPDPTKYVSHLPVHQDGSCNGLQHYAALGGDAIGAR 918
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNL G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVM
Sbjct: 919 QVNLEPGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVM 971
Query: 793 TSVYGVTFVGAREQIKRRLEE 813
T+VYGVTF+GA Q++R+LE+
Sbjct: 972 TNVYGVTFIGATRQVRRQLED 992
>gi|388858367|emb|CCF48096.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial [Ustilago
hordei]
Length = 1536
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 227/599 (37%), Positives = 351/599 (58%), Gaps = 42/599 (7%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + L+P K+A+I + ++M + G ++ +A + +G AIE E + +
Sbjct: 600 PFLRLVPVSKLALITILEIMRMSGNGGVADGMKTTRALLAVGRAIEMEYHSDVVRKNPRI 659
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKS-KRVMEAQKLLKNEETKPWGRDTQAKLGS 367
++ A T + + +++ L+ + I++ ++ E + +L + W + +A++GS
Sbjct: 660 FQN----AHTAQTVLRKRGLINLAARNEIRAWQKQQEEEGVLSS--IPKWTQAVRARVGS 713
Query: 368 RLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L+ A V D + +PAF ++ + K+ GV++ + ++
Sbjct: 714 YLVQHLMHVANVSRKATDRDGVLWEEDQPAFYSTYQYL-------GGKKLGVIKLNEVIA 766
Query: 427 EGLDR-SAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV--T 482
+ LD+ S + L P ++PMLVPPK W ++ GGY + MR S +Q L++ T
Sbjct: 767 QRLDKDSMQETLHPRHLPMLVPPKPWTSHDSGGYYSVRQSAMRYKDSAEQGSYLRAASDT 826
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKP--LS 538
G+ + + ALD LG+T W++NK + V+ IW SG + AG+ VD P+KP +
Sbjct: 827 GD-VDTILAALDVLGNTSWKINKPIFDVMLEIWNSGKDTAGMPPVDMEQPE-PQKPDNYN 884
Query: 539 EDMTEVQKWKWSVRKAKKINQE---RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
DM + +++ K+ NQ+ HSQRCD KL +AR E FY+PHN+DFRGR
Sbjct: 885 HDMKARSVY---LQRLKQWNQQCASNHSQRCDVNYKLEIARAYLGER-FYFPHNMDFRGR 940
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYPM PHLNH+ +D+CRG+L FA+ +PLGK+GLRWL+IH++N+F G +K S R F
Sbjct: 941 AYPMPPHLNHIGNDLCRGLLMFADAKPLGKTGLRWLRIHISNVF--GYDKASFGEREQFA 998
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDG 714
+H +I DS E ++G RWWL A+DP+QCLAAC+ L AL P + S+LP+HQDG
Sbjct: 999 IDHEADIRDSVERTLDGQRWWLKADDPWQCLAACMELKAALDHPDGPEAYESNLPVHQDG 1058
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL G++PADVYS +A V +++ ++ K L
Sbjct: 1059 TCNGLQHYAALGGDLAGAKQVNLSRGDRPADVYSGVADLVIKMLDEEAAKGER------L 1112
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
A IL +V RK+VKQTVMT+VYGVTF+GA+ Q+ R+L +G + + LF AA + AK+
Sbjct: 1113 ATILQGKVTRKVVKQTVMTTVYGVTFIGAKNQVMRQLAARGDVPAE-DLFQAASFLAKI 1170
>gi|401625948|gb|EJS43925.1| rpo41p [Saccharomyces arboricola H-6]
Length = 1351
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 247/675 (36%), Positives = 361/675 (53%), Gaps = 76/675 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNAKLWRWYNDMLPLVKEEIKHCKSSLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E ++ + + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKPTDKKGLTKVEINRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G AIE E R +E+VL E + R VN K+ E +KL
Sbjct: 538 VGKAIEMEFR-------------------SEQVLKSESQTFRD-VN-----KKSPEFKKL 572
Query: 349 LKN----------EETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDV 393
++N E++K W ++ +A++GS L+ +LI A V P+ A
Sbjct: 573 VQNAKSVFRSSQIEQSKILWPQNIRAQIGSVLISMLIHVAKVSVQGVDPITKAKVHGE-- 630
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 631 APAFAHGYQY---HNGSK----LGVLKIHKTLIHQLNGERLIASVQPQLLPMLVEPKSWI 683
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG+T W VN++V V
Sbjct: 684 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASENGDIDRVYDGLNVLGNTPWTVNRKVFDV 743
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W + D VL P P + D + ++ WK V+ A K + +R S RCD
Sbjct: 744 VSQVWNKREGFLDIPGAQDEMVLPPAPPRNSDPSILRTWKLEVKTIANKFSSDR-SNRCD 802
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 803 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 861
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL + R++F E+HL +I DSAENP+ G WW TA+ P+Q LA
Sbjct: 862 LKWLKIHLSNLF--GFDKLRLEDRVSFTESHLEDIKDSAENPLTGQGWWKTADKPWQALA 919
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH PIHQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 920 TCFELNEVMKMDNPEDFISHQPIHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVY 979
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 980 AHVARLVQKRLEIAAEKGDEN------AKILQDKITRKVVKQTVMTNVYGVTYVGATFQI 1033
Query: 808 KRRLEEKGHITDDRQ 822
++L I DDR+
Sbjct: 1034 AKQLSP---IFDDRK 1045
>gi|258573307|ref|XP_002540835.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901101|gb|EEP75502.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1231
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/645 (35%), Positives = 355/645 (55%), Gaps = 63/645 (9%)
Query: 198 KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE-------REQKMQRTKKQ---KAAY 247
KE E + + L P+ + L W L +I+ R Q+ +R + + Y
Sbjct: 233 KESEDRASKTGLGPSEKKMGALLWDWQQCLLTSIQSEMQSALRAQEKERKTPEDNDRCEY 292
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
AP + + A+K++ I + M + D+ +++ + + +G A+++E E
Sbjct: 293 APFLSTIGAEKLSAITILATMNALGRSGMDKGIRLTRLIMVLGKAVQEEYLADRIRESAY 352
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK--NEETKP--WGRDTQA 363
D+ S K V LI SK + + L++ NE +P W T+A
Sbjct: 353 ---------DSAHTNSANSANRAKMVEKLIASKDHSKWRYLVRKYNESHEPVNWSAATEA 403
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPGQKTTKRY 416
K+G+ L +L + V P ++ P+ R PAFRH ++ +
Sbjct: 404 KIGALLASMLFSSTKV-----PVEHKNPETREVTVSKQPAFRHVYQL-------EKGFSI 451
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
G V+ ++E L R A H+L ++PM+ PP W Y+ GG+L PS V+R Q
Sbjct: 452 GYVQLHDSIVEKLGREPASHLLAKHLPMVSPPAPWSSYHHGGFLEQPSLVIRARPDNALQ 511
Query: 476 -EALKSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL-VDRNDVL 531
+ +K+ + G+ + ++F L+ LG T W++N+ V V+ W SG +A + ++
Sbjct: 512 LQYVKAASRRGD-LDEIFAGLNVLGKTGWQINRPVFDVMLEAWNSGKELADIPAAEPNLP 570
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPH 588
PEKP + D ++ + R ++ +R HSQRC L+L VAR E FY PH
Sbjct: 571 EPEKPDTGDSGSLKAY---YRAKAVVDNKRSGFHSQRCFQNLQLEVARAYIGET-FYLPH 626
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGRAYP+ P+ N + SD+CRG+L F+EGR LG+ GL+WLKIHLAN++ G +K S
Sbjct: 627 NMDFRGRAYPLPPYFNQMGSDMCRGLLLFSEGRQLGERGLKWLKIHLANVY--GFDKASF 684
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
D R F +HL ++ DSAE ++G RWWL A DPFQCLAACI L AL + P +SHL
Sbjct: 685 DERAQFSMDHLDDVIDSAEKGLHGRRWWLQAADPFQCLAACIELKNALACADPTKFVSHL 744
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYAALG + + A VNL ++P+D+YS +A VH+ + +D+
Sbjct: 745 PIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSDIYSAVAEHVHQSIVQDAASG--- 801
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ L ++L D+++RK+VKQTVMT+VYGVTF+GA Q++++L+E
Sbjct: 802 ---SQLGELLKDKINRKVVKQTVMTNVYGVTFLGAIRQVQKQLDE 843
>gi|392575571|gb|EIW68704.1| hypothetical protein TREMEDRAFT_69156 [Tremella mesenterica DSM
1558]
Length = 1229
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 241/656 (36%), Positives = 362/656 (55%), Gaps = 70/656 (10%)
Query: 222 GWFGPLSEAIEREQKMQRTKKQKAAYAPH----------------------IELLPADKV 259
GW G L+E + + K+ TK + PH + +LP +K+
Sbjct: 245 GWLGELTERLRQSIKVLATKDE--GVTPHQRDVLPTSFKAAGMQNQYLLLYLTVLPPEKL 302
Query: 260 AVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---IHSFLEKTKNYKRKKIIA 316
A+I + ++M + +G ++ ++ + +G A+E E R I S K I
Sbjct: 303 ALITILEVMRMSGSGGIVDGMKALRGIMAVGKAVETEYRAETIKSVGGVDSPLWLKTIDP 362
Query: 317 DTEEVLSKEKELLRKRVNSLIKSK---RVMEAQKL----LKNEETKPWGRDTQAKLGSRL 369
T++ ++L+ + N + +S+ +Q L L+ T W A LG L
Sbjct: 363 QTQK---PSRQLISQVWNQVGQSRHRPNKSTSQDLKDTGLEAVWTPAWSPLVHASLGGFL 419
Query: 370 VELLIETAYVQHPVNPADYSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
V+ L+ TA V D V +PAF H ++ + K+ GV++ +P+V
Sbjct: 420 VDALLSTAKVVREATDPDTGEKIVEEQPAFAHEYEYLYG-------KKLGVIKLNPVVAA 472
Query: 428 GLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL-KSVTGN 484
L R + H++I ++PMLVPPK W + GGYL VMR S +QQ L K+
Sbjct: 473 RLARDSLHVVIHPRHLPMLVPPKPWTSQDDGGYLVHRVPVMRYKESAEQQIYLRKAFEAG 532
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-----DVLIPEKPLSE 539
++ VF LD L T W +N++V V+ S W SG IA L D +P P
Sbjct: 533 HLEPVFHGLDVLSGTPWTINRKVFDVVLSAWNSGDAIADLPASQEKAQYDFPVPPDP--- 589
Query: 540 DMTEVQ-KWKWSVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D +E Q + + VR + Q+R H++RC L +AR ++ FY PHN+DFRGRA
Sbjct: 590 DNSEPQDRTSYVVRIRSVLAQQRKDHAERCKFNYNLEIARSYLNDT-FYLPHNMDFRGRA 648
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ PHL+ + D+CRG+L+F E R LG++GL+WL+IHLAN++ G +K S + R F
Sbjct: 649 YPIPPHLSPVGDDLCRGLLQFGEKRTLGRAGLKWLQIHLANVY--GYDKASFEERAQFAV 706
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
+H EIF+SA+NP++G RWWL AEDP+QCLA+C +L+ AL+S +P + S LPIHQDG+C
Sbjct: 707 DHEKEIFNSADNPLDGQRWWLQAEDPWQCLASCFDLAAALRSENPEAYESALPIHQDGTC 766
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NG+QHYAALG + A AVNL G++PAD+Y+ +A V++ ++ D K +A+
Sbjct: 767 NGMQHYAALGGDVNGARAVNLENGDRPADIYTGVADLVNKAIEAD------KKVGVPMAQ 820
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
+ + ++RK+VKQTVMT+VYGVTFVGAREQI ++L + I QL+ + Y AK
Sbjct: 821 FITEPLERKVVKQTVMTTVYGVTFVGAREQIAKQLSLRTDIPPG-QLYQLSIYVAK 875
>gi|365760960|gb|EHN02641.1| Rpo41p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1357
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 246/675 (36%), Positives = 364/675 (53%), Gaps = 74/675 (10%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFG---PL------ 227
+L R + E W+ +E K IEK L L W+ PL
Sbjct: 422 VLENRATEAARERWKHDFEEAKARGDISIEKNLNAKL-------WKWYNNMLPLVQEEIN 474
Query: 228 ---SEAIER-----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
S ++ER ++ + + + + Y P++ L+ K+ VI + +++ L G
Sbjct: 475 HCKSLSLERPSPSDKKHLNKVETNRLDYGPYLTLIDPGKMCVITILELLKLNSTGGVIEG 534
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLI 337
++ +A + +G AIE E R L+ R +V K E L + S+
Sbjct: 535 MRTARAVISVGKAIEMEFRSEQVLKSESQTFR--------DVNKKSPEFKKLVQNAKSVF 586
Query: 338 KSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA--YVQ--HPVNPADYSPPDV 393
+S ++ E K+L W ++ +AK+GS L+ +LI A +VQ P+ A
Sbjct: 587 RSSQI-EQSKIL-------WPQNIRAKIGSVLISMLIHVAKVFVQGVDPITKAKVHGE-- 636
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWK 451
PAF H ++ H G K GV++ ++ L+ R + +PMLV PK W
Sbjct: 637 APAFAHGYQY---HNGSK----LGVLKIHKTLIHQLNGERLIASVQPQLLPMLVEPKPWV 689
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSV 510
+ GGY + S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V
Sbjct: 690 NWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGDTPWTVNRKVFDV 749
Query: 511 LESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCD 567
+ +W G + + + VL P + D + ++ WK V+ A K + +R S RCD
Sbjct: 750 VSQVWNRGESFLDIPSAQEEMVLPLAPPRNSDPSILRAWKLQVKTIANKFSSDR-SNRCD 808
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
T KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SG
Sbjct: 809 TNYKLEIARAFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSG 867
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLKIHL+NLF G +KL + R+AF E+HL ++ DSAENP++G RWW TA+ P+Q LA
Sbjct: 868 LKWLKIHLSNLF--GFDKLRLEDRVAFTESHLNDVKDSAENPLSGERWWTTADKPWQALA 925
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+E +K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY
Sbjct: 926 TCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPNDKPQDVY 985
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V + ++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI
Sbjct: 986 AHVARLVQKRLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQI 1039
Query: 808 KRRLEEKGHITDDRQ 822
++L I DDR+
Sbjct: 1040 AKQLSP---IFDDRK 1051
>gi|389743216|gb|EIM84401.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 1355
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 232/601 (38%), Positives = 349/601 (58%), Gaps = 44/601 (7%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
P + LL +K+++IV+ ++M L +G ++ +A + +GMA+E E K +
Sbjct: 392 GPFLSLLKPEKLSLIVILEVMRLQSSGGISGGMKTTRALLSVGMAVEHEY-------KAE 444
Query: 308 NYKRKKIIADTEEVLSKEKE-LLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKL 365
K+ KI T V ++E K + + ++RV + + EE T W + + K+
Sbjct: 445 MCKKNKIQMPT--VGTRETSGFFSKFSYNDLHARRVTARRYMEDGEEWTSQWTQPVRIKV 502
Query: 366 GSRLVELLIETAYVQH----PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
GS LV+ L+E A V+ P NP + + +PAF H ++ I + + GV++
Sbjct: 503 GSFLVDRLMECAMVERTAPDPKNPGNILREE-QPAFFHSYEYIRGN-------KLGVLKL 554
Query: 422 DPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK 479
+ +V E L R + L P ++PMLV PK W YN GGY++ S VMR S++Q+ LK
Sbjct: 555 NQVVQEKLGRDGVRETLHPRHLPMLVKPKPWLNYNDGGYIYNKSLVMRFKESKEQETYLK 614
Query: 480 SVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPL 537
+G ++ V+ LD LGST W++N+ V V+ +W SG + + + PE+P
Sbjct: 615 HASGVGNVELVYAGLDVLGSTPWKINRGVFDVVLEVWNSGKGLCKVPSAAFEEPEPERPA 674
Query: 538 SEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+ ++ + + + +R + HS RC K+ +AR + FY PHNLDFRGR
Sbjct: 675 NMEVDQNGRTIYLTRLRAWTQAKANHHSDRCSVNYKIEIARAFIGDT-FYLPHNLDFRGR 733
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+ PHLNH+ +D+ RG+L F E +PLG GLRWLKIHLANL+ G +K + D R+ FV
Sbjct: 734 AYPLPPHLNHIGNDLSRGLLLFGESKPLGARGLRWLKIHLANLY--GYDKATFDERVEFV 791
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
L EI+DSA+NP+ G RWW+ A+DP+QCLA C L AL S P + LP+HQDG+
Sbjct: 792 HERLDEIYDSADNPLTGRRWWIQADDPWQCLATCKELKAALTSPEPEAYECSLPVHQDGT 851
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD---SNKDPSKHPQA 772
CNGLQHYAALG + A VNL ++P+DVY+ +A V +++K D N+
Sbjct: 852 CNGLQHYAALGGDAAGARQVNLDVADRPSDVYTYVANMVEDLLKADVVAGNR-------- 903
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
A++L +V RK+VKQTVMT+VYGVTF+GAREQI+++L++ ++ + AAA A K
Sbjct: 904 -FAQMLSGRVARKVVKQTVMTTVYGVTFIGAREQIEKQLKDSPYVPKEDAYMAAAYLAKK 962
Query: 833 V 833
V
Sbjct: 963 V 963
>gi|336366344|gb|EGN94691.1| hypothetical protein SERLA73DRAFT_114135 [Serpula lacrymans var.
lacrymans S7.3]
Length = 986
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 231/619 (37%), Positives = 353/619 (57%), Gaps = 43/619 (6%)
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
+ E I E+K ++ + P ++L+ K+++I + ++M L +G ++ +A
Sbjct: 86 IQEIIVAEEKAD-SRGKGTNLGPFLQLVKPSKLSLITILEIMRLNGSGGVSDGMKTARAL 144
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+ +G A+E E K + KR I A + E + ++RV A+
Sbjct: 145 LTVGRAVENEY-------KAQMCKRNNI-AIPSQSRPGEYGFFTGFGYRDLHARRVTAAK 196
Query: 347 KLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKT 403
+ +EE T W + + ++GS LV+ L++ A V + + +PAF H ++
Sbjct: 197 YTMDSEEWTTEWTQLLRVRVGSILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAYEY 256
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFL 461
+ GQK GV+ +P+V + + + + L P ++PMLV PK W Y++GGYL+
Sbjct: 257 VR---GQK----LGVIRLNPVVADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYN 309
Query: 462 PSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S MR S++QQ L+ S GN ++ V+ LD LGST W++N+ V V+ ++W SG
Sbjct: 310 KSSAMRFKDSQEQQSYLQHASELGN-VELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGE 368
Query: 520 NIAGL----VDRNDVLIPEKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
+ L D+ + PEKP LS D+ + ++ + HS RC K+
Sbjct: 369 RLCKLPPSVFDQPE---PEKPDNLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIE 425
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+AR + Y PHNLDFRGRAYP+ PHLNH+ D+ RG+L F E +PLG+ GLRWLKI
Sbjct: 426 IARAFLGDT-MYLPHNLDFRGRAYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKI 484
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL+ G +K + D R+ +V L E++DSAE P+ G RWW A+DP+QCLA C+ L
Sbjct: 485 HLANLY--GFDKANFDERVEYVMERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELR 542
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
AL+S P + +S LP+HQDG+CNGLQHYAALG + A VNL E+P+DVY+ +A
Sbjct: 543 AALESEDPEAYMSSLPVHQDGTCNGLQHYAALGGDNRGAQQVNLSVTERPSDVYTYVANM 602
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V + D+ D AK+L +V RK+VKQTVMT+VYGVT++GAR+QI+R+L++
Sbjct: 603 VQRQLDEDAANDHK------YAKMLQGKVARKVVKQTVMTTVYGVTYIGARDQIERQLKD 656
Query: 814 KGHITDDRQLFAAACYAAK 832
+ I ++ + + AA Y AK
Sbjct: 657 RKDIPEE-ECWNAAAYLAK 674
>gi|336379013|gb|EGO20169.1| hypothetical protein SERLADRAFT_363576 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1134
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 227/598 (37%), Positives = 344/598 (57%), Gaps = 42/598 (7%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
P ++L+ K+++I + ++M L +G ++ +A + +G A+E E K +
Sbjct: 254 GPFLQLVKPSKLSLITILEIMRLNGSGGVSDGMKTARALLTVGRAVENEY-------KAQ 306
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKPWGRDTQAKLG 366
KR I A + E + ++RV A+ + +EE T W + + ++G
Sbjct: 307 MCKRNNI-AIPSQSRPGEYGFFTGFGYRDLHARRVTAAKYTMDSEEWTTEWTQLLRVRVG 365
Query: 367 SRLVELLIETAYVQHPV--NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPL 424
S LV+ L++ A V + + +PAF H ++ + GQK GV+ +P+
Sbjct: 366 SILVDCLMDVATVTRTAIDKRTQETISEDQPAFYHAYEYVR---GQK----LGVIRLNPV 418
Query: 425 VLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK--S 480
V + + + + L P ++PMLV PK W Y++GGYL+ S MR S++QQ L+ S
Sbjct: 419 VADRIAKDGLRETLHPRHLPMLVKPKPWLNYDQGGYLYNKSSAMRFKDSQEQQSYLQHAS 478
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL----VDRNDVLIPEKP 536
GN ++ V+ LD LGST W++N+ V V+ ++W SG + L D+ + PEKP
Sbjct: 479 ELGN-VELVYAGLDVLGSTPWKINRNVFDVVLTVWNSGERLCKLPPSVFDQPE---PEKP 534
Query: 537 --LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
LS D+ + ++ + HS RC K+ +AR + Y PHNLDFRG
Sbjct: 535 DNLSMDIKAKSVYGQRLKAYMQAKANNHSDRCSVNYKIEIARAFLGDT-MYLPHNLDFRG 593
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYP+ PHLNH+ D+ RG+L F E +PLG+ GLRWLKIHLANL+ G +K + D R+ +
Sbjct: 594 RAYPIPPHLNHIGDDLSRGLLMFGEAKPLGERGLRWLKIHLANLY--GFDKANFDERVEY 651
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
V L E++DSAE P+ G RWW A+DP+QCLA C+ L AL+S P + +S LP+HQDG
Sbjct: 652 VMERLDEVYDSAEKPLEGRRWWTKADDPWQCLATCMELRAALESEDPEAYMSSLPVHQDG 711
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL E+P+DVY+ +A V + D+ D
Sbjct: 712 TCNGLQHYAALGGDNRGAQQVNLSVTERPSDVYTYVANMVQRQLDEDAANDHK------Y 765
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
AK+L +V RK+VKQTVMT+VYGVT++GAR+QI+R+L+++ I ++ + + AA Y AK
Sbjct: 766 AKMLQGKVARKVVKQTVMTTVYGVTYIGARDQIERQLKDRKDIPEE-ECWNAAAYLAK 822
>gi|323456523|gb|EGB12390.1| hypothetical protein AURANDRAFT_20280 [Aureococcus anophagefferens]
Length = 902
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 244/660 (36%), Positives = 356/660 (53%), Gaps = 61/660 (9%)
Query: 204 MIEKRLA----PNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKA---AYAPHIELLPA 256
MIE L+ L ++ L W+ PL I E+K + Y P + LLP
Sbjct: 95 MIEDLLSLGKGAELKPVQRLMAQWYEPLVTRITAERKATLDGDKGGDLRIYGPLLLLLPP 154
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
+++AV+ MH +GL + H + +G ++ E R+ K +N +R+++ A
Sbjct: 155 EQLAVLTMHTTIGLCLK-HGPLGAKYSNLVTTLGETVQAEARVL----KLRNLRRERLKA 209
Query: 317 --DTEEVLSKEKELLRKRVNSLIKSKRV-MEAQKLLKNEETKPWGRDTQAKLGSRLVELL 373
D E + K L R + + + V A++ L+ + W T+AKLGS LV L
Sbjct: 210 AEDAEGKRAVPKTFLDARALARLPTHVVNSRAKRALEEGDDTDWPTITRAKLGSALVMAL 269
Query: 374 IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP-GQKTTKRYGVVECDPLVL------ 426
++ A D P +L+H ++ G++ +L
Sbjct: 270 LDVA-------KDDAGSP------------LLEHTIVYSNARKIGIIRAKDELLSHARCP 310
Query: 427 EGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCM 486
E + R+A + ++PMLV P++W+ Y++GG+L L + MRTHG Q EA ++ G
Sbjct: 311 ETIRRAA---MPRFLPMLVEPRRWRAYDEGGFLRLRAVAMRTHGCALQMEAFRNARG-IE 366
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK-PLSEDMTEVQ 545
V LD +G W VN V ++++ W SGG L + D+ +PE L+E +
Sbjct: 367 GGVLAGLDAMGKVPWAVNGPVFDLVKAAWASGGKWPDLPSQEDLALPEPMDLAEALARAD 426
Query: 546 K--------WKWSVRKAKKI---NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+ +R++ ++ N E HS RCDT LKLS+A + KDE FY+P+N+DFRG
Sbjct: 427 GDEDGGKKLYDAHLRRSARLKRRNAELHSLRCDTLLKLSIAEQFKDEAAFYFPYNVDFRG 486
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYP+ P+LNHL SDVCR +L FAE + LG GL WL+IHLANLF G+ K S D R AF
Sbjct: 487 RAYPVPPNLNHLGSDVCRAMLTFAEAKRLGDDGLFWLRIHLANLF--GLSKKSLDDRAAF 544
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
H +I D+ E P++G+ WWL A++P+Q LAAC L+ A + P LP+H DG
Sbjct: 545 AVAHEADIRDAYERPMDGNMWWLEADEPWQALAACRELARAAELDDPRDYECALPVHADG 604
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ VNL+ GE P DVY + V E + R + D + L
Sbjct: 605 SCNGLQHYAALGRDHEGGRQVNLLPGEAPRDVYEGVRALVAEKVARAATGDEALE-TVRL 663
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
A+I+ + RK+VKQTVMTSVYGVTFVGAR+QI RL + G + D+ +L+ ACY A+++
Sbjct: 664 AQIVDGLITRKVVKQTVMTSVYGVTFVGARQQILGRLTDAGDV-DEAELYLCACYVARLT 722
>gi|363748672|ref|XP_003644554.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888186|gb|AET37737.1| hypothetical protein Ecym_1514 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1298
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 263/770 (34%), Positives = 398/770 (51%), Gaps = 72/770 (9%)
Query: 83 QSNFMENIENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCL----EP 138
QS + +++ + HI E Q + VE T V + H L+ L E
Sbjct: 257 QSTGLLHLKRENERHITATEGLQEDIKSVEKGVTELMSVKTFGMRAVRHSLLGLSISDEQ 316
Query: 139 RRRI--FVQDP------PWFSSIFLKGLYKRIKLQEYR--------EMKKRKFNLLRRRQ 182
R+++ V DP P +SI +YK +K E R E + L R
Sbjct: 317 RKKLNGLVVDPLLKTVVPEHTSIDFFEMYKSLKTDEERVAFDSFLEEFNHERQRDLENRS 376
Query: 183 VKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLF------LGWFGPLSEAIEREQ 235
V E W +E K I+K L L G++ + L I+ ++
Sbjct: 377 VDAAKERWRHEFEEAKTRGGLNIKKSLNVKLWEWYNGMYPLVREEVKRCKELVNLIDTKK 436
Query: 236 KMQRTKKQKA--AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
+Q + K KA YAP++ LL +K++VI + +++ L G ++ +A + IG A+
Sbjct: 437 PVQHSPKDKARMEYAPYLTLLNPEKMSVITILELLSLNSTGGVSEGMRTARAVMAIGKAV 496
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E E R + L K++N K + + E K+LL+ + +K +E K+
Sbjct: 497 EMEFRSEALL-KSENQMFKDVSKKSPEF----KKLLQMAKTTFRNTK--IEQSKVF---- 545
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNP-ADYSPPDVRPAFRHRFKTILKHP 408
W +AK+GS L+ +LI A V+ PV A Y PA H F+
Sbjct: 546 ---WPYQIRAKIGSLLISMLINVARVEVTGIDPVTKEAVYGEA---PAICHTFQ------ 593
Query: 409 GQKTTKRYGVVECD-PLVLE-GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+T + GV++ L + G +R + ++PMLV P+ W +N GGY + S ++
Sbjct: 594 -YRTGSKIGVLKLHRSLTYQLGGERLNASVQPQHLPMLVKPRPWTSWNSGGYYYSQSTLI 652
Query: 467 RTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R+ S +Q +K+VTG + +++ L+ LG T W VNK + ++L IW SG +
Sbjct: 653 RSKDSPEQLAYIKAVTGKGAVNNIYQGLNVLGDTAWTVNKPLFTILSKIWNSGEEYLDIP 712
Query: 526 DRND--VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
+ D L P+ P D E+++W+ R + + RCD+ KL +AR E+
Sbjct: 713 PQEDDCQLPPKPPRESDPLELKRWRNDCRFKNIEYRGNRAMRCDSNYKLEIARAFLGEK- 771
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FY+PHN+DFRGRAYP+ PH NHL +D+ R +L F +G+ LG+ GL WLK+HLANL+ G+
Sbjct: 772 FYFPHNMDFRGRAYPLAPHFNHLGNDMTRALLIFWQGKKLGEDGLNWLKVHLANLY--GM 829
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K + R+ F E HL +I DSAENP++G+ WW A+ P+QCLA C+ L +A K +P
Sbjct: 830 DKKPFEDRIKFTEEHLEDIKDSAENPLHGNGWWKKADKPWQCLATCMELRDAYKLENPED 889
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH P+HQDG+CNGLQHYAALG + A VNLV ++P DVY+ +A V E + + +
Sbjct: 890 FISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDVYAFVAKLVTERLTKAAA 949
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
K Q L D ++RK+VK+TVMT+VYGVTFVGA +QI + L E
Sbjct: 950 AGDEKAEQ------LKDMINRKVVKRTVMTNVYGVTFVGASQQIDKELRE 993
>gi|299740865|ref|XP_001834061.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404445|gb|EAU87753.2| mitochondrial RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1341
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 237/667 (35%), Positives = 377/667 (56%), Gaps = 59/667 (8%)
Query: 192 RMVDEYKELEAKMIEKRLAPNLPHIKGLFLGW-------FGPLSEAIEREQKMQRTK-KQ 243
RM +++ L+ I+ R + ++ + GW L IE+E+ + + K
Sbjct: 361 RMKAQHETLDQLGIDTRFRDKV--LQEMMYGWHEKLKKRVAELVSQIEKEEAAGKYRLKP 418
Query: 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
KA AP++ L+ +++++I + + M L +G ++ +A V IG A+E E
Sbjct: 419 KAELAPYLALVQPERLSMITILEAMRLCGSGGVASGMKSTRALVSIGKAVEMEY------ 472
Query: 304 EKTKNYKRKKII------ADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE-TKP 356
K + ++ +I+ DT++V S S + +R+ A+++ E T P
Sbjct: 473 -KARVCRKNRIVIPDVSRPDTQDVFSSLG-------YSNLHERRLAAAKQMTAGESWTAP 524
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV----RPAFRHRFKTILKHPGQKT 412
W + T+A++G+ L+E+L++ A V P + +V PAF H ++ + +
Sbjct: 525 WSQTTRAQIGALLMEVLMQVATV--PQTAVNEETGEVLTEEHPAFFHSYEYM------RG 576
Query: 413 TKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
TK GV++ + V E + + K + P ++PML PPK W N+GGYL+ + +MR
Sbjct: 577 TK-LGVIKVNHAVSERIAKDVLKGTIHPRHLPMLHPPKPWVRANEGGYLYTKTPLMRYKE 635
Query: 471 SRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
+Q++ L +++ M+ V L+ LG T W++NK++ V+ +IW SG + L
Sbjct: 636 CVEQEKYLHEAIRKGNMEAVMAGLNVLGRTPWKINKKIFDVVLTIWNSGEGVGKLPPAKL 695
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQE---RHSQRCDTELKLSVARRMKDEEGFYY 586
+P E +V+ ++ K+ +Q HS+RC T K+ +AR DE Y+
Sbjct: 696 DEPEPQPPPEGENDVRARAIYLQHHKQWSQNVANNHSERCSTNYKIEIARAFLDET-IYF 754
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGRAYP+ PHLNH+ D+ RG+L F E +PLG+ GLRW+KIHLANL+ G +K
Sbjct: 755 PHNLDFRGRAYPLPPHLNHIGDDLSRGLLLFQEAKPLGERGLRWMKIHLANLY--GFDKA 812
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
D R+ +V + L +I DSA+NP+ G WW A+DPFQCLA C+ L+EAL+S P + S
Sbjct: 813 DFDERVHWVHDRLDDIKDSAKNPLTGRGWWKKADDPFQCLATCMELTEALESPDPLAYKS 872
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
LP+HQDG+CNGLQHYAA+G + A VNL A ++P+DVY+ + +V +++ D+ K
Sbjct: 873 CLPVHQDGTCNGLQHYAAMGGDAQGAQQVNLAASDRPSDVYTFVGNKVDKLVNEDAAKGD 932
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
LA++L ++ RK+VKQTVMT+VYGVTFVGAR+QI+ +L ++G I + A
Sbjct: 933 R------LAQLLQGKITRKVVKQTVMTTVYGVTFVGARDQIEGQLIDRGDIPLEECWNVA 986
Query: 827 ACYAAKV 833
A KV
Sbjct: 987 GYLAKKV 993
>gi|327305697|ref|XP_003237540.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
gi|326460538|gb|EGD85991.1| DNA-directed RNA polymerase 1A [Trichophyton rubrum CBS 118892]
Length = 1375
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 231/680 (33%), Positives = 365/680 (53%), Gaps = 59/680 (8%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW----ERMVDEYKELEAKMIEKRLAP 211
K L+ R + R K+ + L R + E W E + + +++EAK+
Sbjct: 350 KKLWGRTPEERERNRKRLRQEQLERDSLTSAIERWRKESEGAIGQRRQVEAKLNA----- 404
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 405 ---FMYEWYQGVLGKIKEELELAKRSESKKKLTPEESERCEYIPFLLAIGPSKLAAVTIL 461
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVL 322
++G + + D+ +++ +IG A++ E I + R+ I + + EV
Sbjct: 462 SVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVY 513
Query: 323 SKEKELLRKRV-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
K + +V NS K + M QK K++ W T+ K+G+ L +L TA +
Sbjct: 514 YLNKTFRQMKVYNSTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEI-- 569
Query: 382 PVNPADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHM 436
P + D V PAF+H ++ H G V+ V+E L + + ++
Sbjct: 570 PTSHKDPVTEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNL 622
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
L ++PM+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L
Sbjct: 623 LAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTI 682
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKA 554
LG T W++N+ V V+ W SG +A +V N L EKP +ED V+ + + +A
Sbjct: 683 LGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRA 742
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+
Sbjct: 743 DNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGL 801
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L F+EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G R
Sbjct: 802 LLFSEGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKR 859
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WWL A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A
Sbjct: 860 WWLQAADPFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQ 919
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VNL G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT
Sbjct: 920 VNLEPGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMT 972
Query: 794 SVYGVTFVGAREQIKRRLEE 813
+VYGVTF+GA Q++R++E+
Sbjct: 973 NVYGVTFIGATRQVRRQIED 992
>gi|409082678|gb|EKM83036.1| hypothetical protein AGABI1DRAFT_69188 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 967
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 223/601 (37%), Positives = 354/601 (58%), Gaps = 46/601 (7%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
+P++ L+ +++++I + ++M L + ++ +A + +G A+E E K +
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEY-------KAQ 142
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
K+ +AD++ S L ++ KR+ ++++ E + W + T++K+G
Sbjct: 143 MIKKPDNVADSK---SAGGNLYSHAAYKNLRDKRLAVSKEIEGEERSLGWSQVTRSKIGG 199
Query: 368 RLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L+E A V+ + +++PAF H ++ + R GV+ +P+V
Sbjct: 200 ILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAYEYL-------RGSRLGVIRLNPVVS 252
Query: 427 EGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
E L K L P ++PMLV P+ W +N GGYL+ + VMR S +QQ LK + +
Sbjct: 253 ERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIYLKEASKH 312
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA----GLVDRNDVLIPEKPLSE 539
M+ V+ LD L ST W++NK+V V+ W SG + + D + P +P E
Sbjct: 313 GQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPE---PVQPQVE 369
Query: 540 DMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
++ +++K + + + K NQ + HS RC KL +AR ++E FY+PHNLDFRGRA
Sbjct: 370 ELADMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDFRGRA 428
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ HLNH+ D+CRG+L FAE +PLG GLRWLKIH+ANL+ G +K + D R+ +V+
Sbjct: 429 YPVPAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRVNWVD 486
Query: 657 NHLYEIFDSA----ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
HL +I+ +A ++P + WWL A DP+Q LAA I L +AL+S +P + S LP+HQ
Sbjct: 487 EHLDQIYQTATRLLDDPATKA-WWLEASDPWQFLAASIELHDALESGNPEAFESSLPVHQ 545
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DG+CNGLQHYAALG + A VNL A +KP+DVYS + V E + +D S A
Sbjct: 546 DGTCNGLQHYAALGGDVQGARQVNLEASDKPSDVYSHVGAMVEEAIAKDCE---SGDKYA 602
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
L+ K ++ RK+VKQTVMT+VYGVTF+GAREQI+++L+++ I ++ + ++AA Y A+
Sbjct: 603 LMLK---GKITRKVVKQTVMTTVYGVTFIGAREQIEKQLKDRKDIPEE-ECWSAAAYLAR 658
Query: 833 V 833
+
Sbjct: 659 L 659
>gi|426200546|gb|EKV50470.1| hypothetical protein AGABI2DRAFT_200200 [Agaricus bisporus var.
bisporus H97]
Length = 967
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 223/601 (37%), Positives = 354/601 (58%), Gaps = 46/601 (7%)
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
+P++ L+ +++++I + ++M L + ++ +A + +G A+E E K +
Sbjct: 90 SPYLSLVNPERLSLITIMEIMRLQGSSGVADGMKTARALISVGKAVEMEY-------KAQ 142
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
K+ +AD++ S L ++ KR+ ++++ E + W + T++K+G
Sbjct: 143 MIKKLDNVADSK---SAGGNLYSHAAYKNLRDKRLAVSKEIEGEERSLGWSQVTRSKIGG 199
Query: 368 RLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
LV+ L+E A V+ + +++PAF H ++ + R GV+ +P+V
Sbjct: 200 ILVDCLMEVAEVERTAKLENGEKVSEMQPAFHHAYEYL-------RGSRLGVIRLNPVVS 252
Query: 427 EGLDRSA-KHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN 484
E L K L P ++PMLV P+ W +N GGYL+ + VMR S +QQ LK + +
Sbjct: 253 ERLATDPLKDTLHPRHLPMLVKPQPWVSHNVGGYLYSKTSVMRFKDSIEQQIYLKEASKH 312
Query: 485 C-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA----GLVDRNDVLIPEKPLSE 539
M+ V+ LD L ST W++NK+V V+ W SG + + D + P +P E
Sbjct: 313 GQMELVYAGLDVLASTPWKINKKVFEVVLRTWNSGERLGKVPPAMYDGPE---PVQPQVE 369
Query: 540 DMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
++ +++K + + + K NQ + HS RC KL +AR ++E FY+PHNLDFRGRA
Sbjct: 370 ELADMKKRSYYLVRQKAYNQAKANNHSDRCSVNYKLEIARAFLNDE-FYFPHNLDFRGRA 428
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ HLNH+ D+CRG+L FAE +PLG GLRWLKIH+ANL+ G +K + D R+ +V+
Sbjct: 429 YPVPAHLNHIGDDLCRGLLTFAEAKPLGVRGLRWLKIHIANLY--GYDKANFDDRVNWVD 486
Query: 657 NHLYEIFDSA----ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
HL +I+ +A ++P + WWL A DP+Q LAA I L +AL+S +P + S LP+HQ
Sbjct: 487 EHLDQIYQTATRLLDDPATKA-WWLEASDPWQFLAASIELHDALESGNPEAFESSLPVHQ 545
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DG+CNGLQHYAALG + A VNL A +KP+DVYS + V E + +D S A
Sbjct: 546 DGTCNGLQHYAALGGDVQGARQVNLEASDKPSDVYSHVGAMVEEAIAKDCE---SGDKYA 602
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
L+ K ++ RK+VKQTVMT+VYGVTF+GAREQI+++L+++ I ++ + ++AA Y A+
Sbjct: 603 LMLK---GKITRKVVKQTVMTTVYGVTFIGAREQIEKQLKDRKDIPEE-ECWSAAAYLAR 658
Query: 833 V 833
+
Sbjct: 659 L 659
>gi|449541840|gb|EMD32822.1| hypothetical protein CERSUDRAFT_57977 [Ceriporiopsis subvermispora
B]
Length = 966
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 224/617 (36%), Positives = 359/617 (58%), Gaps = 44/617 (7%)
Query: 231 IEREQKMQ-RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+E E+K+ + + K + +P + LL +K+++I + ++M L G ++ +A + +
Sbjct: 69 VEEERKLGGKYQGVKTSLSPFLTLLKPEKLSLITILELMNLHGTGGVSDGMKTARALLGV 128
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G A+E LE +K IA + +++ L R+ R + A+K +
Sbjct: 129 GRAVE--------LEHKAQMCKKNNIAIPQSQFARQDTSLFTRLGYRDLQARRVAARKYM 180
Query: 350 KNEE--TKPWGRDTQAKLGSRLVELLIETAYVQH----PVNPADYSPPDVRPAFRHRFKT 403
++ E T W + + K+G LV+ L++ A + P YS + +PAF H ++
Sbjct: 181 EDAEDWTSDWSQLVRVKVGGFLVDCLMDVATITRSMTDPNGEEIYS--EEQPAFFHSYEY 238
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIP-YVPMLVPPKKWKGYNKGGYLFL 461
+ H + GV++ +P+V E + + K+ L P ++PMLV PK W G ++GGY++
Sbjct: 239 VRGH-------KLGVIKLNPVVAERMAKDRIKNTLHPRHLPMLVKPKPWLGPDQGGYMYN 291
Query: 462 PSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ MR S +Q L+ S GN ++ V+ ALD LGST W +N+++ ++ ++W SG
Sbjct: 292 RTTAMRYKDSVEQANYLRHASAAGN-LELVYAALDVLGSTPWNINRRIFDIVLTVWNSGK 350
Query: 520 NIAGLVDR-NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVA 575
+ + +D+ PE+P + + T+ Q +++ K Q++ HS RC K+ +A
Sbjct: 351 RMCKMPPVVSDIPEPERPENYE-TDQQARAIYLQRHKLYAQQKANNHSDRCSVNYKIEIA 409
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R + + PHN+DFRGRAYP+ PHL+H+ D+ RG+L F E +PLG+ G WLK+HL
Sbjct: 410 RAFLGDT-IFMPHNVDFRGRAYPVPPHLSHIGDDLSRGLLLFGEAKPLGERGFWWLKVHL 468
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL+ G +K S R+AFVE HL +IFDS ++P++G WW A+DP+QCLA C+ L A
Sbjct: 469 ANLY--GYDKGSFPERIAFVEAHLDDIFDSVDHPLDGRMWWTKADDPWQCLATCMELKAA 526
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
++S PH LPIHQDG+CNGLQHYAALG +T AA VNL ++P+DVY+ +A V
Sbjct: 527 IESGDPHKYECALPIHQDGTCNGLQHYAALGGDTQGAAQVNLAVTDRPSDVYTYVADMVE 586
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
++ D K +A +L +V RK+VKQTVMT+VYGVT++GAR QI+++L +G
Sbjct: 587 GRIREDVAKGDK------VAMLLQGKVARKVVKQTVMTTVYGVTYIGARAQIEKQLASRG 640
Query: 816 HITDDRQLFAAACYAAK 832
I + + +AA+ Y AK
Sbjct: 641 DIPAE-ECWAASSYLAK 656
>gi|444322297|ref|XP_004181804.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
gi|387514849|emb|CCH62285.1| hypothetical protein TBLA_0G03490 [Tetrapisispora blattae CBS 6284]
Length = 1352
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 251/707 (35%), Positives = 383/707 (54%), Gaps = 77/707 (10%)
Query: 155 LKGLYKRIKLQEYRE-MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL 213
LK +R K E+ E + + +L R + E W+ + K EK+L L
Sbjct: 403 LKTDAEREKFDEFLENFNQDRQRVLETRSTEAAKERWKHDFMDAKSRGEAPFEKKLNVKL 462
Query: 214 PHIKGLFLGWFGPLSEAIEREQKMQR-------TKKQKAA-----YAPHIELLPADKVAV 261
W+ + I++E + K+KA YAP++ L+ +K+ V
Sbjct: 463 -------WEWYSQMLPLIKKEVEQANELLQDSLIDKRKAGGISSDYAPYLNLVDPEKMCV 515
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
I + +++ L G ++ +A + +G AIE E R +E++
Sbjct: 516 ITILELLKLNSTGGVFEGMRTARAVISVGKAIELEFR-------------------SEQL 556
Query: 322 LSKEKELLRK-RVNSLIKSKRVMEAQKLLKN---EETK-PWGRDTQAKLGSRLVELLIET 376
+ E + + K V A+K L++ E++K W + +A++GS ++ L+
Sbjct: 557 IRNEMHTFKNVSTKPHVFKKYVWSAKKRLRDHNIEKSKIEWPQAARAQIGSIMISTLLHV 616
Query: 377 AYVQ---HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--R 431
A V H Y ++ PAF H ++ H G K GV++ +++ L+ R
Sbjct: 617 AKVNVRGHDPKTNKYVYGEL-PAFSHSYQY---HNGAKI----GVLKIHKSLIKQLNGER 668
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTG-NCMKKVF 490
A + +PM+V P+KW +N GGY + S ++RT S +Q LK+V+ N + ++
Sbjct: 669 LATSVQPQQMPMIVKPRKWVSWNSGGYHYSQSILIRTRDSPEQVAYLKAVSEENLIPTIY 728
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
L+ +G T W VN++V +VL +W +G +I G+ D + V++P P + + EV++W
Sbjct: 729 SGLNVIGLTGWTVNRKVFNVLSEVWNTGKQFLDIPGIQD-DMVVLPPLPSNAEPEEVREW 787
Query: 548 KWSVRK-AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
K ++ A KI+ +R S RCD+ KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL
Sbjct: 788 KLKNKEIANKISSDR-SVRCDSNYKLEIARAFLGEK-IYFPHNLDFRGRAYPLSPHFNHL 845
Query: 607 SSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSA 666
+D+ RG+L F +GR LG GL+WLK+HLANLF G +K S D R+AF H+ ++ DSA
Sbjct: 846 GNDMSRGLLIFWKGRRLGPQGLKWLKVHLANLF--GYDKASLDDRIAFANQHIEDLKDSA 903
Query: 667 ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
E+P++G WW +A+ P+Q LA C+ L+EA K +P ISH P+HQDG+CNGLQHYAALG
Sbjct: 904 EHPLDGKGWWQSADKPWQALATCMELNEAFKLENPEDFISHQPVHQDGTCNGLQHYAALG 963
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKL 786
+ A VNLV KP DVY+ +A V ++ D + AKIL ++ RK+
Sbjct: 964 GDVEGAIQVNLVPSPKPQDVYNHVAKLV------EARLDVAAKEGDETAKILQGKITRKV 1017
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAACYAAK 832
VKQTVMT+VYGVTF+GA QI ++L EK DD+QL F Y AK
Sbjct: 1018 VKQTVMTNVYGVTFIGATRQIAKQLTEK---FDDKQLAFEYGGYLAK 1061
>gi|326484447|gb|EGE08457.1| DNA-directed RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1375
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 230/673 (34%), Positives = 368/673 (54%), Gaps = 63/673 (9%)
Query: 166 EYREMKKRKFNLLRRRQVKQE--TEAWERMVDEYKEL--EAKMIEKRLAPNLPHIKGLFL 221
E RE+ +++ LR+ Q++++ T A ER E + + + + +E RL + +
Sbjct: 358 EERELNRKR---LRQEQLERDSLTSAIERWRKESEGVIGQRRQVEARLNA---FVYEWYQ 411
Query: 222 GWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH 275
G G + + +E ++ + KK ++ Y P + + K+A + + ++G + +
Sbjct: 412 GVLGKIKDELELAKRSESKKKLTPEESERCEYTPFLLAVGPSKLAAVTILSVLGSIGSSG 471
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVLSKEKELLRKR 332
D+ +++ +IG A++ E I + R+ I + + EV K + +
Sbjct: 472 MDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVYYLNKTFRQMK 523
Query: 333 V-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391
V NS K + M QK K++ W T+ K+G+ L +L TA + P + P
Sbjct: 524 VYNSTGKFRSYM--QKHAKDQPPVHWPASTEIKIGALLSSMLFSTAEI-----PTSHKDP 576
Query: 392 DVR-------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPM 443
PAF+H ++ H G V+ V+E L + + ++L ++PM
Sbjct: 577 ITEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVEKLRKEPSGNLLAKHLPM 629
Query: 444 LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWR 502
+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L LG T W+
Sbjct: 630 VSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWK 689
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKINQER 561
+N+ V V+ W SG +A +V N L EKP +ED V+ + + +A
Sbjct: 690 INRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGN 749
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+EGR
Sbjct: 750 HSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGR 808
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G RWWL A D
Sbjct: 809 VLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLQAAD 866
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL G+
Sbjct: 867 PFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGD 926
Query: 742 KPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
+P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYGVTF
Sbjct: 927 RPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYGVTF 979
Query: 801 VGAREQIKRRLEE 813
+GA Q++R++E+
Sbjct: 980 IGATRQVRRQIED 992
>gi|327353367|gb|EGE82224.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1393
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 228/654 (34%), Positives = 357/654 (54%), Gaps = 52/654 (7%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ + + +++ E++M++K +P + L W L I
Sbjct: 366 RQRRLESDCVDSAIARWRK-ESEMLQKVGVNPIPSKPMGALLYDWHTQLMSRINEELELI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMLPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMY 484
Query: 289 IGMAIEQE---IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+G AI E +++ +K+K+ +R + D K V+ K +V
Sbjct: 485 LGKAIYDEYLAMQLRELEKKSKSPRRTSALID-------------KLVHKGTKKAQVQWQ 531
Query: 346 QKLLKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ + + EE++ W QAK+G+ L +L+ TA V PV+ D S + + F+
Sbjct: 532 RIIARFEESQRPVDWSPVVQAKIGACLASMLLSTATV--PVSTKDPSTNRTQRTDQAAFR 589
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+ + + R G V + ++E L R +L ++PM+ PP+ W +GG+L
Sbjct: 590 RVYQ---LERGFRVGYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEY 646
Query: 462 PSYVMRTH-GSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
PS VMR G Q +++ + VF L LG T W++N+ VL V+ W SG
Sbjct: 647 PSAVMRVKAGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGE 706
Query: 520 NIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
IA L N +++ PEKP ++D ++ + + A HSQRC +L +AR
Sbjct: 707 EIANLAPENPNIIEPEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIARAY 766
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
++E FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+
Sbjct: 767 RNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANV 825
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F G +K S R F +HL +I DSA N + G +WWL A DPFQCLAACI L+ A+
Sbjct: 826 F--GYDKASFQEREQFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNAMAL 883
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +
Sbjct: 884 EDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKQSI 943
Query: 759 KRD-SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
++D +N D + AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 944 QKDAANGDQT-------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 990
>gi|325187365|emb|CCA21903.1| DNAdependent RNA polymerase putative [Albugo laibachii Nc14]
Length = 1012
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 244/725 (33%), Positives = 387/725 (53%), Gaps = 93/725 (12%)
Query: 158 LYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIK 217
L K QE +++K+ L RQ++ E ++ V+++ + + + A + +
Sbjct: 153 LQKCTTTQEVKDLKR-----LFARQIRLECAIYDMAVEKHLAVRQDVGKLGRASQVNAAQ 207
Query: 218 GLFLGWFGPLSEAIEREQKMQRTKKQK---AAYAPHIELLPADKVAVIVMHKMMGLVMAG 274
L +GW P I EQ+ K+ + Y P + LL A +A + ++ M+ +
Sbjct: 208 NLVVGWMEPAIALISNEQRDVLAGKRSLDSSIYGPALLLLDAKVLAALSINTMLNNCLV- 266
Query: 275 HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVN 334
+ + + ++ A+ +G +++ I +N +++K EK L
Sbjct: 267 -DSKGARFIKLALALGNIVQEHI--------CENKRKRK---------DSEKYFL----- 303
Query: 335 SLIKSKRVMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD 392
SL++ + +K ++N T W + K+G+ L++ + + YV PD
Sbjct: 304 SLVRGIQNDVFRKHMENVYTTAGYWDKRLNLKVGAALIDFIQRSCYV-----------PD 352
Query: 393 --VRPAFRHRFKTILKH-PGQKTTKRYGVVEC---------------DPLVLEGLDRSAK 434
++ A R T+ +H P + K V C D + L+
Sbjct: 353 RLLQAAGRKVHGTLEEHDPEKPPKKEQAFVHCYYYERNRRSGMFKMHDTIFNLILNTDPG 412
Query: 435 HMLIP----YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
++P Y+PMLVPPK+W+ N GGYL L + +MR Q + +K +++VF
Sbjct: 413 MNVLPWTARYLPMLVPPKRWENPNNGGYLKLHTKIMRQRDIVWQMDCVKRAP---LQEVF 469
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSE-DMTEVQKWK 548
L+ L W +N+++L V+ IW GG L R D P+ KP E D + Q
Sbjct: 470 TTLNLLAEVPWVINQEILDVILRIWQEGGGFGDLPSREDFPFPDNKPEDEEDPEKRQALA 529
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
+ K ++ N+E HS RCDT KL VA+ ++E+ Y+P+NLDFRGR YP+ P+LNHL S
Sbjct: 530 KAHAKVRQRNRELHSLRCDTLYKLQVAQEFRNEKEIYFPYNLDFRGRVYPIPPNLNHLGS 589
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ R +L F + +PLGK GLRWLKIHLAN+F GV+K S D R+AF E++L ++F SA +
Sbjct: 590 DMSRSLLLFRDRKPLGKDGLRWLKIHLANVF--GVDKCSFDERVAFTESNLTKVFASARD 647
Query: 669 P--INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
P + + WW TAE PF L C L AL S P + +S++P+HQDGSCNGLQHYAALG
Sbjct: 648 PHGVGDAVWWKTAEYPFLALGVCFELKRALNSPDPETYLSNIPVHQDGSCNGLQHYAALG 707
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN----KDPSKHPQALL------AK 776
R+ VNLV +P DVY ++A +V +++ RD+N +D + + L A
Sbjct: 708 RDLKGGEQVNLVPASRPGDVYIKVAEQVMDLVNRDANLEIPEDATPERKLSLAHRKRCAT 767
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE----KGHITD---DRQLFAAACY 829
L+ + R++VKQTVMTSVYGVTF+GAR+QI+ RL+E G+++D D+Q++ ++CY
Sbjct: 768 FLLGTITRRVVKQTVMTSVYGVTFIGARKQIQARLQEANLSNGNLSDEEMDQQVYDSSCY 827
Query: 830 AAKVS 834
AA+++
Sbjct: 828 AAEIT 832
>gi|302498776|ref|XP_003011385.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
gi|291174935|gb|EFE30745.1| mitochondrial DNA-directed RNA polymerase, putative [Arthroderma
benhamiae CBS 112371]
Length = 1305
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 230/680 (33%), Positives = 366/680 (53%), Gaps = 59/680 (8%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW----ERMVDEYKELEAKMIEKRLAP 211
K L+ R + + K+ + L R + E W E ++ + +++EAK+
Sbjct: 280 KKLWGRTPEEREQNRKRLRQEQLERDSLTSAIERWRKESEGVIGQRRQVEAKLNA----- 334
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 335 ---FMYEWYQGVLGKIKEELELAKRSESKKKLTPEESERCEYIPFLLAIGPSKLAAVTIL 391
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVL 322
++G + + D+ +++ +IG A++ E I + R+ I + + EV
Sbjct: 392 SVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVY 443
Query: 323 SKEKELLRKRV-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
K + +V NS K + M QK K++ W T+ K+G+ L +L TA +
Sbjct: 444 YLNKTFRQMKVYNSTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEI-- 499
Query: 382 PVNPADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHM 436
P + D V PAF+H ++ H G V+ V+E L + + ++
Sbjct: 500 PTSHKDPVTEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNL 552
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
L ++PM+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L
Sbjct: 553 LAKHLPMVSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTI 612
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKA 554
LG T W++N+ V V+ W SG +A +V N L EKP +ED V+ + + +A
Sbjct: 613 LGKTGWKINRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRA 672
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+
Sbjct: 673 DNKKMGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGL 731
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L F+EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G R
Sbjct: 732 LLFSEGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKR 789
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WWL A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A
Sbjct: 790 WWLKAADPFQCLAACVELKNALSLPDPTKYVSHLPVHQDGSCNGLQHYAALGGDAIGARQ 849
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VNL G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT
Sbjct: 850 VNLEPGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMT 902
Query: 794 SVYGVTFVGAREQIKRRLEE 813
+VYGVTF+GA Q++R++E+
Sbjct: 903 NVYGVTFIGATRQVRRQIED 922
>gi|380495438|emb|CCF32395.1| DNA-dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1400
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/597 (37%), Positives = 336/597 (56%), Gaps = 40/597 (6%)
Query: 229 EAIEREQKMQRTKKQKAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
EA E K + Y P + L P AV ++ + V+ G DR + + A V
Sbjct: 421 EAAETAVKKSPADYDRCIYGPFLRLSTPTRLAAVTILGALSSTVITGI-DRGMPLSAAIV 479
Query: 288 HIGMAIEQEIRIHSFLEKTKNYK---RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
+ E++IR + +K K R+ +++ T ++ +K + N +
Sbjct: 480 SLAKMTEEDIRDQAATQKKTAQKPKSRRMVMSPTPTNVANDKRSAEETSNHFSQLSETAV 539
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
A K PW +AK+G+ L+ LIETA + +HP A S +PAF H
Sbjct: 540 ADK--------PWPVAVRAKVGAALLSALIETAKIKVVKEHPETKALVS--QYQPAFSHV 589
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYL 459
+ K K+ G++ + ++ + R + L ++PM+V P+ W+ ++KGG+L
Sbjct: 590 SRL-------KKGKKTGMILLNKELVNIMKREPQGDYLAKHLPMVVEPEPWQAFDKGGFL 642
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R K Q+ ++ M +VF+ LD LG T WRVN VL+V+ + W +
Sbjct: 643 ESRANLVRIKQGDKDQKLYSEAAIARGDMDQVFKGLDVLGKTPWRVNTPVLNVMLAAWNT 702
Query: 518 GGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
G +A L N ++ IP +P + D + W +VR A+ HS RC +L +A
Sbjct: 703 GEALANLPALNPNIPIPREPEATNDPLAHRAWVRAVRAAENERGGMHSVRCFMNFQLEIA 762
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA G+ LG+ GL+WLK+H+
Sbjct: 763 RAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFANGKELGEEGLKWLKVHV 821
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN+F G +K S R +F ++L IFDSA NP++G+RWWL AEDP+QCLA C L A
Sbjct: 822 ANVF--GFDKASLKERESFAMDNLVNIFDSANNPLDGTRWWLKAEDPWQCLATCFELKAA 879
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+S P +SHLP+HQDG+CNGLQHYAALG ++ A VNL G+KPADVYS +A V
Sbjct: 880 LESPEPTKFVSHLPVHQDGTCNGLQHYAALGGDSWGARQVNLEPGDKPADVYSAVANIVK 939
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
E + +D+ ++A L D++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 940 EHIAKDAESG------NVIAVALRDKITRKVVKQTVMTNVYGVTFAGAKKQVCKQLD 990
>gi|261193289|ref|XP_002623050.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239588655|gb|EEQ71298.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
SLH14081]
gi|239614020|gb|EEQ91007.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces dermatitidis
ER-3]
Length = 1382
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 228/654 (34%), Positives = 357/654 (54%), Gaps = 52/654 (7%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ + + +++ E++M++K +P + L W L I
Sbjct: 366 RQRRLESDCVDSAIARWRK-ESEMLQKVGVNPIPSKPMGALLYDWHTQLMSRINEELELI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMLPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTALVMY 484
Query: 289 IGMAIEQE---IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+G AI E +++ +K+K+ +R + D K V+ K +V
Sbjct: 485 LGKAIYDEYLAMQLRELEKKSKSPRRTSALID-------------KLVHKGTKKAQVQWQ 531
Query: 346 QKLLKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+ + + EE++ W QAK+G+ L +L+ TA V PV+ D S + + F+
Sbjct: 532 RIIARFEESQRPVDWSPVVQAKIGACLASMLLSTATV--PVSTKDPSTNRTQRTDQAAFR 589
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+ + + R G V + ++E L R +L ++PM+ PP+ W +GG+L
Sbjct: 590 RVYQ---LERGFRVGYVHANDHIVEKLRREPLGELLAKHLPMVCPPRPWTSAREGGFLEY 646
Query: 462 PSYVMRTH-GSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
PS VMR G Q +++ + VF L LG T W++N+ VL V+ W SG
Sbjct: 647 PSAVMRVKAGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGE 706
Query: 520 NIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
IA L N +++ PEKP ++D ++ + + A HSQRC +L +AR
Sbjct: 707 EIANLAPENPNIIEPEKPETDDRDILKDYYRAKIHAANTRTGYHSQRCFQNFQLEIARAY 766
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
++E FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+
Sbjct: 767 RNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANV 825
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
F G +K S R F +HL +I DSA N + G +WWL A DPFQCLAACI L+ A+
Sbjct: 826 F--GYDKASFQEREQFAMDHLEDIRDSAINGLKGKKWWLDAGDPFQCLAACIELTNAMAL 883
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +
Sbjct: 884 EDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKQSI 943
Query: 759 KRD-SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
++D +N D + AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 944 QKDAANGDQT-------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 990
>gi|326471406|gb|EGD95415.1| DNA-directed RNA polymerase 1A [Trichophyton tonsurans CBS 112818]
Length = 1375
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 230/673 (34%), Positives = 368/673 (54%), Gaps = 63/673 (9%)
Query: 166 EYREMKKRKFNLLRRRQVKQE--TEAWERMVDEYKEL--EAKMIEKRLAPNLPHIKGLFL 221
E RE+ +++ LR+ Q++++ T A ER E + + + + +E RL + +
Sbjct: 358 EERELNRKR---LRQEQLERDSLTSAIERWRKESEGVIGQRRQVEARLNA---FMYEWYQ 411
Query: 222 GWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH 275
G G + + +E ++ + KK ++ Y P + + K+A + + ++G + +
Sbjct: 412 GVLGKIKDELELAKRSESKKKLTPEESERCEYTPFLLAVGPSKLAAVTILSVLGSIGSSG 471
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE---EVLSKEKELLRKR 332
D+ +++ +IG A++ E I + R+ I + + EV K + +
Sbjct: 472 IDKGIKLSSLFTNIGRAVKDEYIIET--------TRRSAIEEAQSENEVYYLNKTFRQMK 523
Query: 333 V-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391
V NS K + M QK K++ W T+ K+G+ L +L TA + P + P
Sbjct: 524 VYNSTGKFRSYM--QKHAKDQPPVHWPASTEIKIGALLSSMLFSTAEI-----PTSHKDP 576
Query: 392 DVR-------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPM 443
PAF+H ++ H G V+ V+E L + + ++L ++PM
Sbjct: 577 ITEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVEKLRKEPSGNLLAKHLPM 629
Query: 444 LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWR 502
+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L LG T W+
Sbjct: 630 VSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGWK 689
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKINQER 561
+N+ V V+ W SG +A +V N L EKP +ED V+ + + +A
Sbjct: 690 INRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDAEDHEAVKAYYRAKTRADNKKMGN 749
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+EGR
Sbjct: 750 HSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSEGR 808
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G RWWL A D
Sbjct: 809 VLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVEDILDSANNGLKGKRWWLQAAD 866
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL G+
Sbjct: 867 PFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEPGD 926
Query: 742 KPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
+P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYGVTF
Sbjct: 927 RPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYGVTF 979
Query: 801 VGAREQIKRRLEE 813
+GA Q++R++E+
Sbjct: 980 IGATRQVRRQIED 992
>gi|400595675|gb|EJP63467.1| DNA-dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1393
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/584 (37%), Positives = 333/584 (57%), Gaps = 46/584 (7%)
Query: 243 QKAAYAPHI-ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
++ Y P I + PA AV ++ + + G D+ + + + I ++I +
Sbjct: 435 ERCIYGPFIRQADPARLAAVTILSTLNAGALLG-VDKGIAIQKIINTIAKQAHEDIELQK 493
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
++ K +R+K+ D + KE NS+ + EA K +++ +KPW
Sbjct: 494 --KQKKTTRRRKVTYDASKAKPKE-------ANSVPQITESQEATKRIEDSASKPWSIQI 544
Query: 362 QAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYG 417
+A++GS L++ LI++A V +HP S +PAF H ++ P + K+ G
Sbjct: 545 KAQVGSFLLKALIDSAKVNVITRHPTTGERVS--QYQPAFTH-----IQQP--RKGKKVG 595
Query: 418 VVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE 476
++ ++E L R L ++PM+V PK WK + GG+L + V+R +Q
Sbjct: 596 MLIMHNTLVEQLKREPMGDFLAKHLPMIVEPKPWKSMHHGGFLESKTSVIRVQPGNVEQR 655
Query: 477 ALKSVTGNC--MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG---GNIAGLVDRNDVL 531
C MK+VF+ LD LG T W++N+ VL+V+ W +G N+ L + D
Sbjct: 656 LYAKAAVECGDMKQVFKGLDVLGQTAWQINRDVLNVMMEAWNTGEEIANMPALEPKFD-- 713
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPH 588
IP +P S + K KW +R K I ER HSQRC L+L +AR +++ Y+PH
Sbjct: 714 IPAEPDSTVNPALHK-KW-IRDVKAIENERSGLHSQRCYMNLQLEIARAFRNQT-IYFPH 770
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+D+RGRAYPM +LNH+ +D R VL FA+G+PLG +GLRWLKIHLAN++ G++K S
Sbjct: 771 NVDYRGRAYPMPTYLNHMGADHARAVLSFAKGKPLGVTGLRWLKIHLANVY--GLDKASF 828
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ R AF I +SA NP++GSRWWL AEDP+QCLAAC L AL+ P + +SHL
Sbjct: 829 EEREAFANESASNIIESATNPLHGSRWWLKAEDPWQCLAACFELKGALQLEDPTTYVSHL 888
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PI QDG+CNGLQHYAALG +T A VNL G++PADVYS +A V + + +D+ +
Sbjct: 889 PIQQDGTCNGLQHYAALGGDTWGAKQVNLEPGDRPADVYSAVADLVKQAITKDAKANNK- 947
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+L ++ RK+VKQTVMT+VYGVTF GA++Q+ ++++
Sbjct: 948 -----FGLVLDGKITRKVVKQTVMTNVYGVTFSGAKKQVCKQID 986
>gi|302655337|ref|XP_003019459.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
gi|291183183|gb|EFE38814.1| mitochondrial DNA-directed RNA polymerase, putative [Trichophyton
verrucosum HKI 0517]
Length = 1305
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 226/676 (33%), Positives = 364/676 (53%), Gaps = 51/676 (7%)
Query: 156 KGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW----ERMVDEYKELEAKMIEKRLAP 211
K L+ R + + K+ + L R + E W E ++ + +++EAK+
Sbjct: 280 KKLWGRTPEEREQNRKRLRQEQLERDSLTSAIERWRKESEGVIGQRRQVEAKLNA----- 334
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKK------QKAAYAPHIELLPADKVAVIVMH 265
+ + G G + E +E ++ + KK ++ Y P + + K+A + +
Sbjct: 335 ---FMYEWYQGVLGKIKEELELAKRSESKKKLTPEESERCEYIPFLLAIGPSKLAAVTIL 391
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE 325
++G + + D+ +++ +IG A++ E +E T+ ++ ++ E +
Sbjct: 392 SVLGSIGSSGMDKGIKLSSLFTNIGRAVKDEY----IIETTRRSAVEEAQSENEVYYLNK 447
Query: 326 KELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385
K NS K + M QK K++ W T+ K+G+ L +L TA + P +
Sbjct: 448 TFRQMKVYNSTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEI--PTSH 503
Query: 386 ADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPY 440
D V PAF+H ++ H G V+ V+E L + + ++L +
Sbjct: 504 KDPVTEKVTYAKEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNLLAKH 556
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGST 499
+PM+ P+ W N+GG+L P+ V+RT Q + L++ + + ++++ L LG T
Sbjct: 557 LPMVSTPRPWVSNNQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKT 616
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLSEDMTEVQKWKWSVRKAKKIN 558
W++N+ V V+ W SG +A +V N L EKP ++D V+ + + +A
Sbjct: 617 GWKINRPVFDVMLEAWNSGEEVANIVAANLNLAELEKPDADDHEAVKAYYRAKTRADNKK 676
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+
Sbjct: 677 MGNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFS 735
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EGR LG+SGLRWL+IHL+N+F G +K S R F +H+ +I DSA N + G RWWL
Sbjct: 736 EGRVLGESGLRWLRIHLSNVF--GFDKASFQEREQFAIDHVDDILDSANNGLKGKRWWLQ 793
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 794 AADPFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLE 853
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYG
Sbjct: 854 PGDRPSDIYTAVAEHVKASIASDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYG 906
Query: 798 VTFVGAREQIKRRLEE 813
VTF+GA Q++R++E+
Sbjct: 907 VTFIGATRQVRRQIED 922
>gi|164655881|ref|XP_001729069.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
gi|159102958|gb|EDP41855.1| hypothetical protein MGL_3857 [Malassezia globosa CBS 7966]
Length = 1358
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 228/637 (35%), Positives = 357/637 (56%), Gaps = 47/637 (7%)
Query: 216 IKGLFLGWFGPLSEAIERE-QKMQRTKKQKAAYA------PHIELLPADKVAVIVMHKMM 268
++ W+ L A+ ++ +++ R + A + P + LLPA K+A+IV+ ++M
Sbjct: 443 LQAWMWDWYQKLEVALRKDIERLGRQTRHAVASSMDAQLYPFLCLLPASKMAMIVILEIM 502
Query: 269 GLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL 328
+ ++ +A + +G AIE E + + + + + +++
Sbjct: 503 RMQGISGVADGIKTTRALITVGKAIETEYSAVMLNKHPEIFVQAR----------AAQQM 552
Query: 329 LRKRVNSLIKSKRVMEAQKLLKNEE-----TKPWGRDTQAKLGSRLVELLIETAYVQHPV 383
L KR + ++R ++A + EE W + +A++GS LV+ L++ A V
Sbjct: 553 LGKRSLIDLAARRDLKAWQERCREENIETNVPKWTQIIRARVGSFLVQHLLDVATVHRKA 612
Query: 384 NPADYSP-PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIP-Y 440
D + +PAF ++ I K+ GV+ + +V + LD+ S + L P +
Sbjct: 613 YDRDGELWEEDQPAFYSAYEYI-------QGKKLGVIRLNEVVSQRLDKESVRETLHPRH 665
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN-CMKKVFEALDTLGST 499
+PMLVPP+ W ++ GGY + + MR S +Q L++ + N ++ V LD LG+T
Sbjct: 666 LPMLVPPRPWLSHDSGGYYSMKTSAMRYKDSVEQSSYLRAASENHGLEVVLAGLDVLGNT 725
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK-WKWSVRKAKKIN 558
W VNK+V V+ IW SG + L + D + + + +R+ I
Sbjct: 726 AWNVNKEVFDVVLQIWNSGEALGDLPPAEMTDPEPERPPPDDIKAKGIYLQRLRQWNTIR 785
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
HSQRCD KL +AR +E FY+PHN+DFRGRAYP+ PHLNH+ +D+CRG+L+FA
Sbjct: 786 SSNHSQRCDINYKLEIARSFLNER-FYFPHNMDFRGRAYPIPPHLNHIGNDLCRGLLKFA 844
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
E +PLG+ GLRWL+IHLAN++ G +K S R F +H +I DSA N +G RWWL
Sbjct: 845 EAKPLGEKGLRWLRIHLANVW--GYDKASFAEREQFTIDHEADIRDSATNAYHGKRWWLQ 902
Query: 679 AEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
A+DP+QCLA CI L++A P + S LP+HQDG+CNGLQHYAALG + A VNL
Sbjct: 903 ADDPWQCLATCIELTKAWDYPDGPEAFPSQLPVHQDGTCNGLQHYAALGGDLQGAKQVNL 962
Query: 738 VAGEKPADVYSEIA-VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
G++PADVY+ +A + + ++ +R DP+ A++L +V RK+VKQTVMT+VY
Sbjct: 963 RGGDRPADVYTGVAELVIEQLNRRAEEGDPT-------AQLLRGKVTRKVVKQTVMTTVY 1015
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
GVTF+GA+ Q+ R+L ++G T +++ AA Y AKV
Sbjct: 1016 GVTFIGAKNQVMRQLVDRGD-TPAEEVWTAASYLAKV 1051
>gi|325094325|gb|EGC47635.1| DNA-directed RNA polymerase [Ajellomyces capsulatus H88]
Length = 1397
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 226/652 (34%), Positives = 348/652 (53%), Gaps = 48/652 (7%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ E + +K+ E++M+ + +P + W L I
Sbjct: 366 RQRRLESDCVESAIARWKK-ESEMLHRVGVNPIPSKPMGAFLYDWHTQLMSRINEELERI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ +++ ++
Sbjct: 425 EESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGLKLTGLVMY 484
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G A+ E E K K K I+ L+ K V+ + +V + +
Sbjct: 485 VGKAVYDEYLAMQLRELEKKSKPTKKIS----------ALIDKLVHKGTRKAQVQWRRII 534
Query: 349 LKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPV-NP-ADYSPPDVRPAFRHRFKT 403
+ E+++ W QAK+G+ L +L+ TA V P +P + + AFR ++
Sbjct: 535 ARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKDPKTNQQKQTDQAAFRRVYQL 594
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
+ R G V + ++E L R +L ++PM+ PP+ W GG+L P
Sbjct: 595 -------ERGFRVGYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWTSARGGGFLEYP 647
Query: 463 SYVMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
S VMR G Q +++ + VF L LG T W++N+ VL+V+ W SG
Sbjct: 648 STVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEE 707
Query: 521 IAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
IA L N +++ PEKP ++D ++ + + A HSQRC +L +AR +
Sbjct: 708 IANLAPENPNIIEPEKPDTDDRDILKDYYRARMHATNARTGYHSQRCFQNFQLEIARAYR 767
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+E FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F
Sbjct: 768 NET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF 826
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
G +K S R F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+
Sbjct: 827 --GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALE 884
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + ++
Sbjct: 885 DPTKYVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQ 944
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+D+ K AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 945 KDAAKGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 990
>gi|255719121|ref|XP_002555841.1| KLTH0G18744p [Lachancea thermotolerans]
gi|238937225|emb|CAR25404.1| KLTH0G18744p [Lachancea thermotolerans CBS 6340]
Length = 1289
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/583 (36%), Positives = 336/583 (57%), Gaps = 41/583 (7%)
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEI 297
++ K + Y P++ L+ +K+ VI + +++ L G ++ +A + +G AIE E
Sbjct: 428 KKQNKARQEYGPYLTLVDPEKMCVITILELLKLNSTGGIIEGMRTARAVISVGKAIEMEF 487
Query: 298 RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPW 357
R L+ + + D + S E +L+ +R + +S ++ E++ L W
Sbjct: 488 RAEMLLKNESH-----VFKDVNKK-SHEFKLMVQRARATFRSIKIEESKVL--------W 533
Query: 358 GRDTQAKLGSRLVELLIETAYVQ-HPVNP-ADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
++ +AK+GS L+ +LI A V+ V+P + PAF H ++ H G K
Sbjct: 534 PQEARAKIGSILISMLIHVAKVKVEGVDPVTNEKIKGEAPAFSHGYQY---HNGSK---- 586
Query: 416 YGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
GV++ ++ L+ R + +PMLV P+ W +N GGY + S ++R+ S +
Sbjct: 587 LGVLKIHRSLIHQLNGERLVAAVQPQLLPMLVKPRAWNSWNSGGYYYTQSTLIRSKDSPE 646
Query: 474 QQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRND 529
Q LK+V+ + V+ L+ LG T W VN+++ +V+ +W SG +I G+ ++
Sbjct: 647 QVAYLKAVSDAGAIDNVYRGLNVLGETPWTVNRKMFNVMSQVWNSGKPFLDIPGIQEKL- 705
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
L P+ P D + ++WK ++ S RCD KL +AR E+ FY+PHN
Sbjct: 706 TLTPQPPRDADPSVHREWKLKNKELANEFSGNRSARCDANYKLEIARAFLGEK-FYFPHN 764
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYP+ PH NHL +D+ RG++ F G+ LG +GLRWLK+HL+NLF G +K +
Sbjct: 765 LDFRGRAYPLSPHFNHLGNDMSRGLMTFWHGKRLGSTGLRWLKVHLSNLF--GFDKAPLE 822
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
R+ F E+H+ +I DSAE+P++G WW A+ P+Q LA C+ L+EALK S+P +SH P
Sbjct: 823 DRVRFAEDHIDDIRDSAEHPLDGKCWWKEADKPWQALATCMELNEALKMSNPDDFVSHQP 882
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA-VRVHEIMKRDSNKDPSK 768
+HQDG+CNGLQHYAALG + A VNLV ++P DVYS +A + V + K +N D +
Sbjct: 883 VHQDGTCNGLQHYAALGGDIEGATQVNLVPSDRPQDVYSHVAKLVVARLEKAAANGDET- 941
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
A +L D++ RK+VKQTVMT+VYGVT++GA QI ++L
Sbjct: 942 ------AALLKDKIKRKVVKQTVMTNVYGVTYIGATHQIDKQL 978
>gi|378726279|gb|EHY52738.1| DNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1425
Score = 370 bits (951), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 237/657 (36%), Positives = 348/657 (52%), Gaps = 50/657 (7%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIEREQKMQ 238
RQ K E +A + + +K K + +L H I L W L+E I E K+
Sbjct: 353 RQRKLERDAIQSALQRWKTEYQKRARSGITGDLAHGKIGALLWQWHEILAEKITNEIKLA 412
Query: 239 R-----------TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
R +K +A +P +ELLPA+++A + +M ++ + ++V+
Sbjct: 413 REEDATPGKKTAQQKLRAECSPFLELLPAERLAAVTSVALMQIMSKVGASKQAKLVRLVT 472
Query: 288 HIGMAIEQEIRIHSFLEK-TKNYKRKKIIADTEEVLS-KEKELLRKRVNSLIKSKRVMEA 345
+G AIE E +K K K+ +A+T K E L N+L + A
Sbjct: 473 ELGQAIETEYDATQVAQKRNAMLKAKEKLAETAPGAPLKWDETLD---NTLHRRSSHHAA 529
Query: 346 QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRF 401
K W + AKLGS L EL+ +TA + + D + +P F H
Sbjct: 530 TPYAYK---KNWSKTIHAKLGSVLCELMFDTAKIM--ITREDKTTGKKVSIAQPVFIH-- 582
Query: 402 KTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+ +R G V + V + A+H++ +PM+ PP+ WKG+ GG+L
Sbjct: 583 -----STSYQNGRRVGTVSLHEDFVKILVSEPAEHLIAKQLPMVCPPRPWKGFYDGGFLE 637
Query: 461 LPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+R + Q+ + + + ++F +D LG T WR+NKQV SV+ W SG
Sbjct: 638 SSQPFLRVKYNETSQKDYGVAAAERGDLDQLFAGVDILGKTGWRINKQVFSVMLEAWNSG 697
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVA 575
IA L N + +E+ ++W W + K + I+ ER HS RC ++ +A
Sbjct: 698 EEIANLPPLNKQYPEVERPAENAPPKERWNWFL-KMRMIDNERSGIHSNRCFQNFQMEIA 756
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ DE FY PHN+DFRGRAYP+ P+LN + +D RG+L F GR LG GLRWLKIHL
Sbjct: 757 KAYLDET-FYLPHNVDFRGRAYPIPPYLNQMGADNARGLLLFDRGRELGADGLRWLKIHL 815
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN++ G +K S R F +H+ +++DS +NP+ G RWWLTAEDP+QCLA C L+ A
Sbjct: 816 ANVY--GYDKASLSDRAQFPMDHIDDVYDSVQNPLKGRRWWLTAEDPWQCLATCYELANA 873
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L S P +S LPIHQDGSCNGLQHYAALG + A VNL G+KPADVY+ +
Sbjct: 874 LDSPDPTKYVSRLPIHQDGSCNGLQHYAALGGDIAGARQVNLEPGDKPADVYTGVC---- 929
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
E++K D +D +K LAK+L ++ RK+VKQTVMT+VYGVTF+GA Q++++++
Sbjct: 930 ELVKADIKEDAAKGDA--LAKMLDGRITRKVVKQTVMTNVYGVTFLGAVRQVRKQVD 984
>gi|367034009|ref|XP_003666287.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
gi|347013559|gb|AEO61042.1| hypothetical protein MYCTH_2310823 [Myceliophthora thermophila ATCC
42464]
Length = 1402
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 226/669 (33%), Positives = 360/669 (53%), Gaps = 65/669 (9%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQ- 235
R Q + E + + + ++E +++ L L P + W L + +EQ
Sbjct: 360 REVQARLERDCVDAAIARWREENEQLMSMGLNTQLSTPSLNSKLYDWHQALEARLIQEQA 419
Query: 236 ---------KMQRTKKQKAAYAPHIELLPADKVA-VIVMHKMMGLVMAGHEDRCVQVVQA 285
+ R ++ Y PH+ PA+++A V ++ + L M G D+ + V
Sbjct: 420 KVEASLSAPRKSREDMERCVYGPHLLQSPANRLAAVAILSALSSLAMHG-ADKGIPVSNM 478
Query: 286 AVHIGMAIEQEIRIHSF---LEKTKNYKRKKIIADTEEVLSKEKELLR----------KR 332
+ E++IR + L K+K K+K ++L+R K
Sbjct: 479 VQQLAKIAEEDIRAQAIAKNLPKSKPRKQKSA-----------RQLMRLHDAAPTATTKS 527
Query: 333 VNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADY 388
+ S A +E W +AK G+ ++ L++TA + +HP
Sbjct: 528 SPTATASPASQPATNSEPSEFASRWPIAIKAKFGAVILGALMDTAKIVVEREHPETKEKV 587
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPP 447
+ V+PAF H + K +R GV++ + ++E + R + L ++PM+V P
Sbjct: 588 T--QVQPAFTHTVQL-------KKGRRVGVIQPNRSLIELMKREPRGEALARHLPMVVEP 638
Query: 448 KKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNK 505
+ W ++KGG++ PS ++R K Q A ++ M+++ LD LG T W++N+
Sbjct: 639 EPWSKFDKGGFITSPSPLVRLKNHEKDQRIYAEAAIERGDMEQMMRGLDVLGKTAWKINR 698
Query: 506 QVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHS 563
V V+ W +G A L +D + PE ++D + + W +V+ A+ HS
Sbjct: 699 PVFDVMLEAWNTGEEFANLPALDPKIPIPPEPDSTDDPMKRRLWLRAVKAAENEKSGLHS 758
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
RC +L +AR +D+ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+GRPL
Sbjct: 759 VRCFMNFQLEIARAFRDQT-FYFPHNIDFRGRAYPIPTYLNHMGADNMRGLLLFAKGRPL 817
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
GKSGL WLK+HL+N++ G +K S R F + +L IFDSA+NP+ G RWWL AEDP+
Sbjct: 818 GKSGLAWLKVHLSNVY--GFDKASLKEREEFADRNLENIFDSADNPLTGKRWWLQAEDPW 875
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
QCLA C L AL S P + +SHLP+HQDG+CNGLQHYAALG +T A VNL+ G++P
Sbjct: 876 QCLATCFELKAALSSPDPTAYVSHLPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGDRP 935
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
ADVYS +A E++++ +D + + A+ + ++ RK+VKQTVMT+VYGVTFVGA
Sbjct: 936 ADVYSAVA----ELVQKQVTEDLANGNE--FAQAMDGKITRKVVKQTVMTNVYGVTFVGA 989
Query: 804 REQIKRRLE 812
++Q++++L+
Sbjct: 990 KKQVQKQLD 998
>gi|393219634|gb|EJD05121.1| DNA/RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 1397
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 231/629 (36%), Positives = 346/629 (55%), Gaps = 66/629 (10%)
Query: 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR----- 298
K P + LL K+++I + ++M L G ++ +A + +G AIE E +
Sbjct: 440 KMRMGPFLSLLKPSKLSLITILELMRLQGTGGVTEGMKTARALLTVGKAIEMEYKAQILK 499
Query: 299 -------IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVN-SLIKSKRVMEAQKLLK 350
+ S T R+N S ++R E + +
Sbjct: 500 KNNVHVPVMSSFSLTAAGGAGAGGGGGGAGGGGIGGGGVGRINDSGFFTRRAYEELREWR 559
Query: 351 N------EETKPWGRD----TQAKLGSRLVELLIETAYV-QHPVNP-ADYSPPDVRPAFR 398
E+++ W D + ++ S LV+ L++ A V + VN + +PAF
Sbjct: 560 KAASKHFEDSQEWASDWTHAIRVRVASFLVDCLMDVATVTRTAVNRRTGEEIFEQQPAFF 619
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIP-YVPMLVPPKKWKGYNKG 456
++ + H R GV+ +P+V E L + + L P ++PMLV PK W +++G
Sbjct: 620 QSYEYLRGH-------RLGVIRLNPVVAERLQKDDIRATLHPRHLPMLVKPKAWINHDEG 672
Query: 457 GYLFLPSYVMRTHGSRKQQEALK-SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GY++ + VMR +++Q L+ + M+ VF +LD LGST W +N+++ V+ +W
Sbjct: 673 GYIYNKNSVMRLKDTQEQLTYLRHAAQAGHMEHVFASLDVLGSTPWVINREIFDVVLQVW 732
Query: 516 VSGGNIAGLVDRNDVLIPE--KPLSEDMTEVQK------WK-WSVRKAKKINQERHSQRC 566
SG + + N L PE +P + D + K WK W KA HS RC
Sbjct: 733 NSGDRFVKIPEAN-YLEPEPVRPENYDTDQAAKTRYLMAWKQWQTNKANS-----HSTRC 786
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
K+ +AR + Y+PHN+DFRGRAYP+ PHLNH+ D+ RG+++FAE +PLG S
Sbjct: 787 SVNYKVEIARSFL-ADTMYFPHNIDFRGRAYPIPPHLNHIGDDLSRGLMKFAEKKPLGTS 845
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GLRWLKIHLANL G +K S + R+ FV +H+ +I DSAE P+ G++WW+ A+DP+QCL
Sbjct: 846 GLRWLKIHLANL--SGFDKGSFEERVQFVTDHMADIIDSAERPLEGNQWWVKADDPWQCL 903
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AAC L AL+SS P S+LP+HQDG+CNGLQHYAALG + + A VNL +KP+DV
Sbjct: 904 AACKELHHALESSDPEGYESNLPVHQDGTCNGLQHYAALGGDAMGARQVNLDITDKPSDV 963
Query: 747 YSEIAVRVHEIMKRD---SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
Y+ +A V +K+D NK A++L +V RK+VKQTVMT+VYGVTFVGA
Sbjct: 964 YTHVADMVELKIKQDIETGNK---------YAEMLQGKVSRKVVKQTVMTTVYGVTFVGA 1014
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAK 832
REQI+R+L+++G I +++ A+ Y AK
Sbjct: 1015 REQIERQLKDRGDIA-AHEVWGASAYLAK 1042
>gi|345571061|gb|EGX53876.1| hypothetical protein AOL_s00004g535 [Arthrobotrys oligospora ATCC
24927]
Length = 1466
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 224/603 (37%), Positives = 335/603 (55%), Gaps = 49/603 (8%)
Query: 243 QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302
++ Y P++ LL +K+A I + ++ L + ++ + + +G +E E I
Sbjct: 486 ERCQYGPYLRLLSPEKLAGITITSIIKLASGWQDSTAMKASASIISVGRNVEHEY-ISEQ 544
Query: 303 LEKT--------KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
L+K + YK+K + EV EK+L +++ + LL NE
Sbjct: 545 LQKAFETKAGEPEYYKKKALQKQLAEV-KNEKDLAMLIYRQNRRAEMEKDGTGLLLNER- 602
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQ-HPVNP-----ADYSPPDVRPAFRHRFKTILKHP 408
W + +AK+GS LV LL + A ++ P N D +PA H ++ +
Sbjct: 603 --WSQPVRAKVGSVLVSLLFQVAKIKVRPTNKKVLKHMDKDLAIDQPALVHGYQFV---- 656
Query: 409 GQKTTKRYGVVE-----CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
K+ GV+ L+ E L + L +PM+ P+ W +N G Y F P+
Sbjct: 657 ---GGKKIGVIRLHDEFSKKLMTEPLKGTT---LAKQLPMIAKPRPWCAWNDGAYYFTPT 710
Query: 464 YVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
++R S +Q +K + GN + ++F LD LGST W +N++V V+ +W +G
Sbjct: 711 RMVRVKDSLEQTMYVKEASKHGN-LDRLFTGLDVLGSTAWTINQKVFDVILQVWNTGDKF 769
Query: 522 AGL--VDRNDVLIPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
A + DV +PE P + D +K + ++ I + HSQRCD KL +AR
Sbjct: 770 ADIPPTFEKDVNMPEMPQPNADAAAKAAFKIAYQEMALIRKNHHSQRCDVNFKLEIARAF 829
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+E FY+PHN+DFRGRAY M PHLNHL +D+CRG+L+F+E +PLG+SGLRWLKIHL+NL
Sbjct: 830 YNEV-FYFPHNVDFRGRAYAMPPHLNHLGNDLCRGLLKFSEKKPLGESGLRWLKIHLSNL 888
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GG +K S R + E+ + ++FDSA +P+ G RWWL +EDP+Q LA C+ L A+ S
Sbjct: 889 --GGYDKASLMAREEWAESRMEDVFDSARDPLGGKRWWLESEDPWQMLATCMELEAAMSS 946
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P S++P+HQDG+CNGLQHYAALG + + A VNL +KP DVY+ +A V++ +
Sbjct: 947 KDPLKYESNMPVHQDGTCNGLQHYAALGGDIVGAKQVNLEPADKPQDVYTGVADLVNQAV 1006
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
D+ LAK L+ ++RK+VKQTVMT+VYGVTF+GA+ Q+K RL EKG
Sbjct: 1007 AEDAQNGNE------LAKDLLGHINRKVVKQTVMTNVYGVTFIGAKNQVKSRLMEKGVWP 1060
Query: 819 DDR 821
DR
Sbjct: 1061 RDR 1063
>gi|315046832|ref|XP_003172791.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311343177|gb|EFR02380.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1375
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 227/675 (33%), Positives = 369/675 (54%), Gaps = 67/675 (9%)
Query: 166 EYREMKKRKFNLLRRRQVKQET-----EAW----ERMVDEYKELEAKMIEKRLAPNLPHI 216
E RE K++ LR+ Q+++++ E W E + + +++EAK+ +
Sbjct: 358 EEREQNKKR---LRQEQLEKDSLTSAIERWRKESEGAIGQRRQVEAKLNA--------FM 406
Query: 217 KGLFLGWFGPLSEAI------EREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGL 270
+ G G + E + E ++K+ + ++ Y P + + K+A + + ++G
Sbjct: 407 YEWYQGVLGKIKEELDLAKRSESKKKLTSEESERCEYIPFLLAVGPSKLAAVTILSVLGS 466
Query: 271 VMAGHEDRCVQVVQAAVHIGMAIEQEIRIH----SFLEKTKNYKRKKIIADTEEVLSKEK 326
+ + D+ +++ +IG A++ E + S +E+ +N EV K
Sbjct: 467 IGSSGMDKGIKLSSLFTNIGRAVKDEYIVETTRRSAIEEAQN---------ENEVYYLNK 517
Query: 327 ELLRKRV-NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV--QHPV 383
+ +V N+ K + M QK K++ W T+ K+G+ L +L TA + H
Sbjct: 518 TFRQMKVYNTTGKFRSYM--QKHTKDQPPVHWPASTEIKIGALLSSMLFSTAEIPTSHKD 575
Query: 384 NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVP 442
A+ + PAF+H ++ H G V+ V+E L + + ++L ++P
Sbjct: 576 PVAETVTYAMEPAFQHVYQLQKGH-------NVGYVQLHEKVVERLRKEPSGNLLAKHLP 628
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKW 501
M+ P+ W +GG+L P+ V+RT Q + L++ + + ++++ L LG T W
Sbjct: 629 MVSTPRPWVSNTQGGFLTQPTQVVRTRHDDAQSQYLQAASDRGDLDELYKGLTILGKTGW 688
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE--KPLSEDMTEVQKWKWSVRKAKKINQ 559
++N+ V V+ W SG +A +V N + +PE KP +ED ++ + + +A
Sbjct: 689 KINRPVFDVMLEAWNSGEEVANIVAAN-LNLPELEKPDAEDREAIKTYYRAKTRADNKKM 747
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
HSQRC ++ +AR +E FY PHN+DFRGRAYP+ P+ N + +D CRG+L F+E
Sbjct: 748 GNHSQRCYLNFQMEIARAYLNE-SFYLPHNMDFRGRAYPLPPYFNQMGADNCRGLLLFSE 806
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
GR LG+SGLRWL+IHL+N+F G +K S R F +H+ EI DSA N + G RWWL A
Sbjct: 807 GRVLGESGLRWLRIHLSNVF--GYDKASFQEREQFSIDHVEEILDSANNGLKGKRWWLKA 864
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
DPFQCLAAC+ L AL P +SHLP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 865 ADPFQCLAACVELKNALSLPDPTQYVSHLPVHQDGSCNGLQHYAALGGDAIGARQVNLEP 924
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
G++P+D+Y+ +A V + D+ DP +AK++ ++ RK+VKQTVMT+VYGV
Sbjct: 925 GDRPSDIYTAVAEHVKASIANDAKAGDP-------IAKLMDGKITRKVVKQTVMTNVYGV 977
Query: 799 TFVGAREQIKRRLEE 813
TF+GA Q++R++E+
Sbjct: 978 TFIGATRQVRRQIED 992
>gi|225558540|gb|EEH06824.1| mitochondrial RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1397
Score = 369 bits (947), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 224/652 (34%), Positives = 347/652 (53%), Gaps = 48/652 (7%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ E + +K+ E++M+ + +P + W L I
Sbjct: 366 RQRRLESDCVESAIARWKK-ESEMLHRVGVNPIPSKPMGAFLYDWHTQLMSRINEELERI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTGLVMY 484
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G A+ E E + + K L+ K V+ + +V + +
Sbjct: 485 VGKAVYDEYLAMQLRE----------LEKKSKPTKKTSALIDKLVHKGTRKAQVQWRRII 534
Query: 349 LKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPV-NP-ADYSPPDVRPAFRHRFKT 403
+ E+++ W QAK+G+ L +L+ TA V P +P ++ + AFR ++
Sbjct: 535 ARFEQSQRPVDWSPVVQAKIGACLASMLLSTATVPVPTKDPKTNHQKQTDQAAFRRVYQL 594
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
+ R G V + ++E L R +L ++PM+ PP+ W GG+L P
Sbjct: 595 -------ERGFRVGYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWTSARGGGFLEYP 647
Query: 463 SYVMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
S VMR G Q +++ + VF L LG T W++N+ VL+V+ W SG
Sbjct: 648 STVMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEE 707
Query: 521 IAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
IA L N +++ PEKP ++D ++ + + A HSQRC +L +AR +
Sbjct: 708 IANLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNARTGYHSQRCFQNFQLEIARAYR 767
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+E FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F
Sbjct: 768 NET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF 826
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
G +K S R F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+
Sbjct: 827 --GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALE 884
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + ++
Sbjct: 885 DPTKFVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQ 944
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+D+ K AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 945 KDAAKGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 990
>gi|367044972|ref|XP_003652866.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
gi|347000128|gb|AEO66530.1| hypothetical protein THITE_2114671 [Thielavia terrestris NRRL 8126]
Length = 1408
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 221/664 (33%), Positives = 350/664 (52%), Gaps = 52/664 (7%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAIEREQ---- 235
Q K E + + ++ ++ ++ L L P + W L I EQ
Sbjct: 363 QAKLERDCIDAAINRWRSENEALMSMGLNTQLATPSLNSRLYDWHRALEARIAAEQAKVD 422
Query: 236 ------KMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
K + + Y PH+ PA ++A + + + ++ D+ + V +
Sbjct: 423 KSESAPKKSQEDLDRCLYGPHLLQAPAKRLAAVTILSALSILAMHGADKGIPVSNMVQQV 482
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEE-----VLSKEKELLRKRVNSLIKSKRVME 344
E++IR L K+ Y R K+ ++ + +E+++ N R +
Sbjct: 483 AKIAEEDIR-SQILAKSLPYARLKLKHRRQQNARQLIRQRERKIEEPPSNEPETGARTLS 541
Query: 345 AQKLLKNEETKP-------WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDV 393
+ K P W +AK G+ L+ LI++A + +HP +
Sbjct: 542 VNAVSKEIGESPPDRLEARWPTVIRAKFGAVLLGALIDSAKIVVNREHPDTKQMVT--QS 599
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKG 452
PAF H + K ++ GV++ + +++ + R + L ++PM+V P W
Sbjct: 600 MPAFIHTVQL-------KKGRKVGVIQPNRALVDLMKREPRGEALARHLPMVVEPVPWSR 652
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
++KGG++ PS ++R K+Q A ++ M+++ LD LG T WR+N+ V V
Sbjct: 653 FDKGGFIGSPSPLIRLKNHEKEQRFYAEAAIERGDMEQMMRGLDVLGKTAWRINRPVFDV 712
Query: 511 LESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDT 568
+ W SG A +D + PE ++D + + W +V+ A+ HS RC
Sbjct: 713 MLEAWNSGEEFANFPALDPKIPIPPEPDSTDDPMKRRLWVRAVKAAENEKSGLHSVRCFI 772
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
+L +AR +D+ FY+PHNLDFRGRAYP+ +LNH+ +D RG+L FA+G+PLGK+GL
Sbjct: 773 NFQLEIARAFRDQT-FYFPHNLDFRGRAYPLPTYLNHMGADHMRGLLIFAKGKPLGKNGL 831
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
RWLK+HL+N++ G +K S R F +L IFDSA+NP+ G RWWL AEDP+QCLAA
Sbjct: 832 RWLKVHLSNVY--GFDKASLQEREDFANQNLENIFDSADNPLTGKRWWLGAEDPWQCLAA 889
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C L AL S P + +SH P+HQDG+CNGLQHYAALG +T A VNL+ G++PADVY+
Sbjct: 890 CFELKAALSSPDPAAFVSHFPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGDRPADVYA 949
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V E + +D + AK + +++RK+VKQTVMT+VYGVTFVGA++Q++
Sbjct: 950 AVAELVQEQVAKDVAAGNN------FAKAVDGKINRKVVKQTVMTNVYGVTFVGAKKQVQ 1003
Query: 809 RRLE 812
++L+
Sbjct: 1004 KQLD 1007
>gi|342888051|gb|EGU87468.1| hypothetical protein FOXB_02053 [Fusarium oxysporum Fo5176]
Length = 1450
Score = 368 bits (945), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 198/467 (42%), Positives = 290/467 (62%), Gaps = 32/467 (6%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
W +A++GS L++ LIETA + +HP++ S ++PAF H ++ P K
Sbjct: 579 WSVQVRARVGSILLKSLIETAKINVVKEHPISRERIS--QLQPAFSH-----MQAP--KK 629
Query: 413 TKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
K+ G++ +P ++E L R L ++PM+ P+ W N+GG+L + ++R
Sbjct: 630 GKKVGMLTINPELVERLKREPMGDFLAKHLPMIAEPRPWTRINEGGFLVSKASLIRVKSG 689
Query: 472 RKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN- 528
+Q+ A ++ M +VF+ LD LG T WRVN VL V+ W SG IA + +
Sbjct: 690 DVEQKLYANAAIKRGDMDQVFKGLDVLGKTPWRVNNSVLDVMIEAWNSGDAIANMPELTP 749
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFY 585
D+ IP +P + D + W +R K++ ER HSQRC L+L +AR + ++ Y
Sbjct: 750 DLQIPAEPTNSDPLLRRAW---IRNVKQVENERGALHSQRCYMNLQLEIARAFR-KQVIY 805
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+D+RGRAYP+ +LNH+ +D R +L+FAEG+ LG+ GLRWLKIHLAN++ G +K
Sbjct: 806 FPHNMDYRGRAYPIPTYLNHMGADHTRALLKFAEGKRLGEQGLRWLKIHLANVY--GFDK 863
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S D R AF ++L I +S ENP+NGSRWWL AEDP+QCLA C L A P +
Sbjct: 864 ASFDEREAFATDNLANITESVENPLNGSRWWLKAEDPWQCLATCFELKAAYDLPDPTEFV 923
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S+LP+HQDG+CNGLQHYAALG +T A VNL+ G +PADVYS +A V E +++D+N
Sbjct: 924 SNLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGSRPADVYSAVANLVKESIEKDANAG 983
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ L K + ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 984 ------SQLGKNCLGKITRKVVKQTVMTNVYGVTFAGAKQQVCKQLD 1024
>gi|303313347|ref|XP_003066685.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106347|gb|EER24540.1| DNA-dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1385
Score = 368 bits (944), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 236/666 (35%), Positives = 353/666 (53%), Gaps = 67/666 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 363 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 422
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 483 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 526
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 585 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 637
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 638 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 697
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 698 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 756
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 757 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 815
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 816 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 873
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 874 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 933
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 934 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 987
Query: 806 QIKRRL 811
Q++++L
Sbjct: 988 QVQKQL 993
>gi|119191788|ref|XP_001246500.1| hypothetical protein CIMG_00271 [Coccidioides immitis RS]
Length = 1363
Score = 368 bits (944), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 236/666 (35%), Positives = 353/666 (53%), Gaps = 67/666 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 341 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 400
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 401 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 460
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 461 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 504
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 505 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 562
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 563 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 615
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 616 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 675
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 676 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 734
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 735 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 793
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 794 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 851
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 852 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 911
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 912 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 965
Query: 806 QIKRRL 811
Q++++L
Sbjct: 966 QVQKQL 971
>gi|347976143|ref|XP_003437401.1| unnamed protein product [Podospora anserina S mat+]
gi|170940259|emb|CAP65486.1| unnamed protein product [Podospora anserina S mat+]
Length = 1346
Score = 368 bits (944), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 223/663 (33%), Positives = 358/663 (53%), Gaps = 46/663 (6%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM- 237
R Q + E + + VD +++ M E L + P + W L I +E K+
Sbjct: 268 REIQSRLEKDTIDAAVDRWRKESQAMSEMGLGLSSPGLNARLFEWHTDLQRRISQEIKLA 327
Query: 238 -QRTKKQK--------AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
+ K+QK + P++ D++A +V+ ++ LV D+ V + + H
Sbjct: 328 VESEKRQKKTSDDLVRSQLTPYLLQSTPDRLAAVVILSLLSLVSTYGVDKGVPLTRVVHH 387
Query: 289 IGMAIEQEIRIHSFL-----EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
+ ++E++IR++ E + K ++ A T ++K ++ + + +
Sbjct: 388 LASSVEEDIRVYKATQSIPKEMARTQKAREQKAKTLLKVAKARDYYAAKRGGQEEPAQAA 447
Query: 344 EAQKLLKNEETKP-----WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVR 394
K+ ++ P W T+ K G+ L+ ++TA V +HP S ++
Sbjct: 448 NDGKVFSSDLPLPILEPRWPATTKTKFGALLLGAFLDTAKVTVVREHPETKELVS--QMQ 505
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGY 453
PAF H + + K+ GV+ + +++ L + +L ++PM+V P+ W +
Sbjct: 506 PAFSHSTQL-------RRGKKVGVIVPNRALVDILKTEPRVEVLARHLPMVVEPEPWTKW 558
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVL 511
KGG++ P+ V+R K Q+ ++ M+++ + LD LG T WR+N++V V+
Sbjct: 559 EKGGFIEYPTSVVRAKAQEKDQQIYTEAAIERGDMEQMMKGLDVLGQTAWRINRKVFDVM 618
Query: 512 ESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
W +G +A + V+ N + PE +D + W +V+ + HSQRC
Sbjct: 619 LEAWNNGAEVANIPAVNPNLPMPPEPENLDDPLARRVWLKAVKAVENEKGGLHSQRCFMN 678
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+L +AR +D+ F++PHNLDFRGRAYP+ +LNH+ +D RG+L+FA+G+PLG +GLR
Sbjct: 679 FQLEIARAFRDQT-FFFPHNLDFRGRAYPVPTYLNHMGADHMRGLLKFAKGKPLGTNGLR 737
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHLAN++ G +K S R F +L DS NP+NG+ WWL AEDP+QCLA C
Sbjct: 738 WLKIHLANVY--GFDKASLAEREEFANENLQNALDSVRNPLNGNGWWLKAEDPWQCLATC 795
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
L++AL+ P +SHLPIHQDG+CNGLQHYAALG + A VNL+ GE+PADVYS
Sbjct: 796 FELTDALEHPDPTKFVSHLPIHQDGTCNGLQHYAALGGDAWGAEQVNLIPGERPADVYSA 855
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A V + + D+++ AL KI+ RK+VKQTVMT+VYGVT GAR+QI +
Sbjct: 856 VADIVAKRIDHDADELKLDLAVALKGKIV-----RKVVKQTVMTNVYGVTRTGARKQILK 910
Query: 810 RLE 812
+L+
Sbjct: 911 QLD 913
>gi|320036385|gb|EFW18324.1| DNA-directed RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 1385
Score = 368 bits (944), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 236/666 (35%), Positives = 353/666 (53%), Gaps = 67/666 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 363 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 422
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 483 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 526
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 585 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 637
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 638 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 697
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 698 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 756
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 757 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 815
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 816 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 873
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 874 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 933
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 934 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 987
Query: 806 QIKRRL 811
Q++++L
Sbjct: 988 QVQKQL 993
>gi|392864271|gb|EAS34905.2| mitochondrial DNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1385
Score = 368 bits (944), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 236/666 (35%), Positives = 353/666 (53%), Gaps = 67/666 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL-PHIKGLFLGWFGPLSEAIERE-- 234
+R RQ++ E ++ ++ +++ A+ + P + G+ W L +IE E
Sbjct: 363 IRERQLRLEQDSVIAAMERWRKESAQRNSRPSNPTGGDKLGGVLWDWHQSLLTSIEGEIQ 422
Query: 235 --QKMQRTKKQ------KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
K Q K++ + YAP + + D++A I + M + ++ +++ +
Sbjct: 423 SILKAQEKKRKTSEDNDRCEYAPFMNSIGPDRLAAITILATMNALGKTGMNKGIRLTRLI 482
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR----VNSLIKSKR- 341
+ +G A+++E Y +I +E SK L R V LI S R
Sbjct: 483 MLLGRAVQEE------------YVTDRI----QETPSKSAPLDSGRRAKLVQDLIPSNRG 526
Query: 342 ---VMEAQKLLKNEETKP--WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--- 393
V E+ NE +P W +AK+GS L +L + V V + ++
Sbjct: 527 RKGVRESLIEKYNEIHEPIKWSAAVEAKIGSLLASMLFSSTKVV--VKQQNTETGEITFV 584
Query: 394 -RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
+PAFRH ++ H G V V++ R A +L ++PM+ PP+ W
Sbjct: 585 KQPAFRHVYQLEKGH-------SVGFVHIHDSVVDRFRREPASSLLAKHLPMVSPPQPWT 637
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQ----QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
Y GG+L P+ +MR + Q Q + + + ++F L+ LG T WR+NK V
Sbjct: 638 SYRYGGFLNQPTIIMRARSNDSQCLQRQYVRAAASRGDLDEIFAGLNVLGKTGWRINKPV 697
Query: 508 LSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQR 565
V+ W SG +A + VD N + P KP ++D +++ + S HSQR
Sbjct: 698 FDVMLEAWNSGDELADIAPVDPN-LPEPTKPETDDPVQLRAYYRSKTLVDNKRSGLHSQR 756
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C L+L +AR E FY PHN+DFRGRAYP+ P+ N + D+CRG+L F++GR LG+
Sbjct: 757 CFQNLQLEIARAYVGET-FYLPHNMDFRGRAYPLPPYFNQMGPDMCRGLLLFSKGRELGE 815
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLKIH+AN++ G +K S D R F +HL ++ DSAE +NG RWWL A DPFQC
Sbjct: 816 RGLRWLKIHIANVY--GYDKASFDERAQFAMDHLDDVIDSAEKGLNGRRWWLEASDPFQC 873
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LAACI L AL P ISHLPIHQDGSCNGLQHYAALG + + A VNL ++P+D
Sbjct: 874 LAACIELKNALACPDPTKYISHLPIHQDGSCNGLQHYAALGGDIIGARQVNLEPSDRPSD 933
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
+YS +A V + + +++ LAKIL D+V+RK+VKQTVMT+VYGVTF+GA
Sbjct: 934 IYSAVADHVRQSIAQEAAAGNQ------LAKILEDKVNRKIVKQTVMTNVYGVTFLGAIR 987
Query: 806 QIKRRL 811
Q++++L
Sbjct: 988 QVQKQL 993
>gi|213406824|ref|XP_002174183.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
gi|212002230|gb|EEB07890.1| DNA-directed RNA polymerase [Schizosaccharomyces japonicus yFS275]
Length = 1169
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 232/677 (34%), Positives = 374/677 (55%), Gaps = 52/677 (7%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH---IKGLFLGWFGPLSEAIERE-QK 236
RQ E +A E + E++ +++ R N PH + L W+ L I+ E ++
Sbjct: 294 RQRLMEKKALESSIAEWRHSYNEIL--RRGENPPHSRSLNALLYVWYEKLEALIQEEFRQ 351
Query: 237 MQRTKKQKAA---------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
++ ++ KA+ YA +++LL K+A I + +M+ V V+ A +
Sbjct: 352 IEDSENNKASPYKSRTRAEYAQYLKLLSPSKLAAITVLEMLTFVTNKRYCTGVRSTFALM 411
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
+G A E+E L+K + D++++ S + NS +K R E
Sbjct: 412 SVGRAFEKEY-FSEQLQKIEAEGNLPKSVDSKKLFSSPRLF-----NSFVKKIRDNEDNG 465
Query: 348 LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH-PVNPADYSPP-DVRPAFRHRFKTIL 405
++++ +PW + K+ S V LLI +A ++ ++P S AF+H ++ +
Sbjct: 466 IVQSSLYQPWSPNILVKVASVTVSLLINSAKIRDSALDPETKSTVFQDSSAFQHGYRYL- 524
Query: 406 KHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLP 462
++ GV+ P++ + L + S H L PY +PMLV P+ W +N GGY +
Sbjct: 525 ------AGRKVGVIVAHPVLYDILASELSGAH-LPPYRLPMLVKPRPWLMWNSGGYYYSS 577
Query: 463 SYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
V+R S +Q LK+ + + +K + E L LG+ W+VN++V +L IW +G +
Sbjct: 578 ESVLRFKESHEQLLYLKAASDSGQLKDLLEGLTALGNVGWKVNRKVYDMLVKIWNTGESF 637
Query: 522 AGLVDRNDVL----IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARR 577
+ N L +PEK + D + +W +++ +HSQRC+ L +A+
Sbjct: 638 LSIPSANTTLDIQEMPEKSI--DPSARAEWLRMLKERSLDFASQHSQRCEFNYTLEIAKA 695
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
E FY+PHN+DFRGRAYP+ HL+H++SD CR +L FAEG+PLG+ G +WLK+ LAN
Sbjct: 696 FL-HETFYFPHNVDFRGRAYPIPSHLHHVNSDFCRSLLIFAEGKPLGEEGFQWLKVQLAN 754
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK 697
LF G K + R+ FV+NHL +IF+S + P++G ++W A+DPFQ LA C +++A++
Sbjct: 755 LF--GKNKSTIQERIDFVDNHLQDIFNSVDKPLDGEQFWTKADDPFQALAVCFEIADAIR 812
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
S P S ISH+P+ QDG+CNGLQHYAALG + A VNL +P DVY+ +A RV I
Sbjct: 813 SGDPSSFISHVPVQQDGTCNGLQHYAALGGDPEGAREVNLEPSNRPNDVYAAVAARVISI 872
Query: 758 MKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
+K+++ DP +A++L D+V R ++KQ VMT+VYGVT+VGAR QI+++L+ +
Sbjct: 873 LKKEAAAGDP-------MAELLKDRVTRTVIKQPVMTNVYGVTYVGARAQIEKQLKLQED 925
Query: 817 ITDDRQLFAAACYAAKV 833
I D A+A A +V
Sbjct: 926 IPKDLLRDASAFLAKRV 942
>gi|255953185|ref|XP_002567345.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589056|emb|CAP95178.1| Pc21g02810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1353
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 216/580 (37%), Positives = 328/580 (56%), Gaps = 35/580 (6%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D++A + + +M D+ +++ A +G ++ EI
Sbjct: 410 QKERCEYGVFLQALDPDRLAALTLLSVMSCFSRQGMDKGLKLSAIASIVGKELQDEIIAD 469
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
++L+K K+ ++ A E + +++ + R R SL+ +K+ +E+ WG
Sbjct: 470 TYLKKNKSVDPSRLKALKETLANRKDKQGRLRWRSLV--------EKMNAEDESIIWGSR 521
Query: 361 TQAKLGSRLVELLIETA----YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+Q K+G L+ +L+E A + + PV +++PAF H ++ H G KR
Sbjct: 522 SQVKVGGVLMSMLVEVAKAPVWTEDPVTKK--RTLNMQPAFDHSYQI---HFG----KRS 572
Query: 417 GVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGY-LFLPSYVMRTHGSRKQ 474
G + +++ + + +L ++PM+ PK W G GGY ++ S V T G Q
Sbjct: 573 GHIHMHSKIVDIVAKEPPAEVLARHLPMVCKPKPWTGPRSGGYKIYESSLVRTTPGELLQ 632
Query: 475 QEALKSV-TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
LK+V + +K++ LD LG T WR+N+QV V+ W G + L N D+
Sbjct: 633 PAYLKAVLKDDGLKEIRAGLDVLGGTGWRINQQVFEVMLEAWNDGKAVGKLAPLNPDLQA 692
Query: 533 PEKPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
PEKP + +Q+ W VR+ + + HS RC +L VAR + +E FY PHN+D
Sbjct: 693 PEKPSPDADYAIQREWNRKVRETENLRSGFHSVRCFQNFQLEVARAFR-KETFYLPHNMD 751
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F +G+ LG SG+RWLKI +ANLF G +K S R
Sbjct: 752 FRGRAYPLPPYLNQMGADNSRGLLLFDKGKALGPSGMRWLKIQIANLF--GFDKASMSER 809
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA + G RWWL AEDP+Q LAAC L AL+ S P +SHLPIH
Sbjct: 810 EQFTMDHLDDVLDSANTGLRGRRWWLQAEDPWQLLAACCELRNALQLSEPTEYVSHLPIH 869
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG + + A VNL ++P+DVY+ + V E + +D+
Sbjct: 870 QDGSCNGLQHYAALGGDRVGAQQVNLEPSDRPSDVYTGVCEFVKEEIAQDAANGND---- 925
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
LAK+L +V+RK+VKQTVMT+VYGVTF+GA Q+KR+L
Sbjct: 926 --LAKLLDGRVNRKIVKQTVMTNVYGVTFLGATRQVKRQL 963
>gi|67477377|sp|P38671.2|RPOM_NEUCR RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
Length = 1423
Score = 367 bits (942), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 214/600 (35%), Positives = 332/600 (55%), Gaps = 43/600 (7%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 479
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K+ + + + +LR K + S + +
Sbjct: 480 ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 535
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 593
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 594 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 646
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 647 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 706
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 707 GKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 763
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 764 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 823 VHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFEL 880
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 881 AAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 940
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++E
Sbjct: 941 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIE 994
>gi|164425173|ref|XP_962570.2| hypothetical protein NCU06308 [Neurospora crassa OR74A]
gi|157070818|gb|EAA33334.2| predicted protein [Neurospora crassa OR74A]
Length = 1443
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 214/600 (35%), Positives = 332/600 (55%), Gaps = 43/600 (7%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 479
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K+ + + + +LR K + S + +
Sbjct: 480 ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 535
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 593
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 594 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 646
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 647 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 706
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 707 GKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 763
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 764 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 823 VHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFEL 880
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 881 AAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 940
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++E
Sbjct: 941 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIE 994
>gi|410730293|ref|XP_003671326.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
gi|401780144|emb|CCD26083.2| hypothetical protein NDAI_0G03060 [Naumovozyma dairenensis CBS 421]
Length = 1354
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 236/693 (34%), Positives = 378/693 (54%), Gaps = 59/693 (8%)
Query: 158 LYKRIKLQEYREMKK---RKFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
+YK + + RE + +FN+ R+R ++ E W+ +E KE I K L
Sbjct: 405 IYKSLTNESERETFESILEQFNIDRQRALESRAADAAKERWKHDFEEAKERGDLSIRKSL 464
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQ-KMQRTKK--QKAAYAPHIELLPADKVAVIVMHK 266
L + L L L + IE+ Q K+++ K + + P++ L+ +K+ VI + +
Sbjct: 465 NVKLWNWYELMLP---ILKKEIEKAQLKLEKQSKIFKSQDFDPYLLLVNPEKMCVITILE 521
Query: 267 MMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEK 326
++ L G ++ +A + +G AIE E R L+ I D + ++ K
Sbjct: 522 LLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKN-----ESSIFKDINKKSAEFK 576
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HP 382
+++ +R S +S + +E K+ W + +A++GS L+ LI A + P
Sbjct: 577 KIV-QRAKSNFRSTQ-LEKSKIF-------WPQAVRAQIGSILISTLIHVAKIDVEGFDP 627
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPY 440
+ PAF H ++ + GV++ ++ L+ R +
Sbjct: 628 ITKTKVYGE--APAFAHSYQYC-------NGMKLGVIKIHKALINQLNGERLVASVQPQL 678
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN-CMKKVFEALDTLGST 499
+PMLV P++WK + GGY + S ++R+ S +Q LK+V+ + V+ L+ LG T
Sbjct: 679 LPMLVEPREWKNWRSGGYFYTQSTLIRSKESPEQLAYLKAVSDKEAIDDVYNGLNALGKT 738
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKWKWSVRK-AKK 556
W VNK++ ++ +W G + + + LIP P + D + +++WK ++ A K
Sbjct: 739 AWTVNKRLFEIISKVWNEGIEFLDIPQIQYDMQLIPPPPRNSDPSILREWKLQNKEIANK 798
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
I++ R S RCDT KL +AR E+ FY+PHNLDFRGRAYP+ PH NHL +D+ RG+L
Sbjct: 799 ISKNR-SIRCDTNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDLSRGLLI 856
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F +G+ LG GL WLKIH ANL+ G++K+ R+ F+E+H+ ++ D+AENP++G WW
Sbjct: 857 FWKGKKLGPDGLSWLKIHCANLY--GMDKIPFTERIQFIEDHIEDVKDTAENPLDGKGWW 914
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A+ P+Q LA CI L+EALK +P ISH P+HQDG+CNGLQHYAALG + A VN
Sbjct: 915 KKADKPWQLLATCIELNEALKLDNPEDFISHQPVHQDGTCNGLQHYAALGGDVEGATQVN 974
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L+ E+P DVY +A V + +++ K A++L+D++ RK+VKQ VMT+VY
Sbjct: 975 LIPNERPQDVYRHVANLVKKRLEKAVLAGDKK------AELLVDKITRKVVKQPVMTNVY 1028
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
GVT+VGA QI+++L E + D +Q F + Y
Sbjct: 1029 GVTYVGATFQIEKQLSE--YFPDRKQCFDLSKY 1059
>gi|344232068|gb|EGV63947.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1279
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 246/697 (35%), Positives = 372/697 (53%), Gaps = 69/697 (9%)
Query: 157 GLYKRIKLQEYREMKKRKFNLLRRR-----QVKQETEAWERMVDEYKELE-------AKM 204
LYK +K + RE +L R +++ A E+ +Y+E++ AK
Sbjct: 321 ALYKLLKTDQDREKFNEALDLFNRARQRTIELRGADSAKEKWKHDYEEMQRRGSIHFAKS 380
Query: 205 IEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK-------KQKAAYAPHIELLPAD 257
+ RL + + ++ E +Q K K+++ YAP++ L+ +
Sbjct: 381 LNARLYEWYEMLLPFVKEEVNQCHKIMDGEITIQNAKSEDRALVKERSYYAPYLTLVTPE 440
Query: 258 KVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
K+ + + +++ L G ++ +A + +G AIE E YK +K++
Sbjct: 441 KMCAVTILELLRLNSTGGIADGMRTARALISVGKAIELE------------YKSQKLMES 488
Query: 318 TEEVLSKEKELLRKRVNSLIKSKRVMEA-QKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
++ +SK+ R+ K RVM K N+ W AK+GS L LLI
Sbjct: 489 EKKSISKKSRSARE----WNKIFRVMNNYSKDSDNQAHNEWDNTLHAKIGSILTSLLIHV 544
Query: 377 AYVQHPVNPADYSPPDV----RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A V PV D + +PAF H ++ + GQK GV++ +++ L
Sbjct: 545 AKV--PVKGTDPATGKTVTGSQPAFFHTYQYL---QGQKL----GVLKLHKNIIKQLSVD 595
Query: 433 AKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKV 489
L+ ++PML PP+KW YN+GGYLF + ++RT S + LK+ + + KV
Sbjct: 596 VDGSLLQPHFLPMLTPPRKWSSYNEGGYLFSQNTLVRTRDSPETLAYLKAASQRGDLDKV 655
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEK-PLSEDMTEVQ 545
++ L+ LG+T W VN++VL V+ W +G +I +VD + +PE P + + ++
Sbjct: 656 YDGLNVLGNTPWTVNRKVLEVMTKFWNTGDEFLDIPPVVDEPE--LPEPVPSNAEPNVLR 713
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+++ VR A I+ SQRCDT KL +AR E+ F+ PHN+DFRGRAYPM PH NH
Sbjct: 714 EYQRKVRLAINISASAKSQRCDTNYKLEIARAFLGEKMFF-PHNIDFRGRAYPMSPHFNH 772
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +D+ R + F +G+ LG+ GL WLK+HLANL+ GV+K+ + R F E HL +I +S
Sbjct: 773 LGNDLTRSLFLFWDGKQLGERGLWWLKVHLANLY--GVDKIPLEERAQFTETHLDKIRES 830
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
AE P + WW E P+Q LA C L+EA K P +SH+P+HQDGSCNGLQHYAAL
Sbjct: 831 AETPFDKDAWWTKGEKPWQVLACCFELNEAYKLEDPTQYVSHVPVHQDGSCNGLQHYAAL 890
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
G + A VNL ++P DVYS +A V + + D+ KH A L D+++R+
Sbjct: 891 GGDIEGARQVNLYPADRPQDVYSSVASIVQQRVDADAEAG-EKH-----AVFLKDKINRR 944
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
+VKQTVMT+VYGVTFVGAREQIK++L K H D +
Sbjct: 945 VVKQTVMTNVYGVTFVGAREQIKKQL--KVHFDSDSE 979
>gi|154286378|ref|XP_001543984.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407625|gb|EDN03166.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1397
Score = 366 bits (940), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 221/650 (34%), Positives = 344/650 (52%), Gaps = 44/650 (6%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIE------ 232
RQ + E++ E + +K+ E++M+ + +P + W L I
Sbjct: 366 RQRRLESDCVESAIARWKK-ESEMLHRVGVNPIPSKPMGAFLYDWHTQLMSRINEELERI 424
Query: 233 ----REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
++ +M Q+ +P++ + DK+A + + + D+ V++ ++
Sbjct: 425 EESEKKSRMSPADSQRVEISPYLRAIKTDKLAALTILSTFNALNKSGVDKGVKLTGLVMY 484
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G A+ E E + + K L+ K V+ + ++ + +
Sbjct: 485 VGKAVYDEYLAMQLRE----------LEKKSKPTKKTSALIDKLVHKGTRKAQIQWRRII 534
Query: 349 LKNEETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
+ E+++ W QAK+G+ L +L+ TA V PV D + + F+ +
Sbjct: 535 ARFEQSQRPVDWSPVVQAKIGACLASMLLSTATV--PVPTKDQKTNQQKQTDQAAFRRVY 592
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
+ + R G V + ++E L R +L ++PM+ PP+ W GG+L PS
Sbjct: 593 Q---LERGFRVGYVHANDYIIEKLRREPLGELLAKHLPMVCPPRPWTSSRGGGFLEYPST 649
Query: 465 VMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
VMR G Q +++ + VF L LG T W++N+ VL+V+ W SG IA
Sbjct: 650 VMRVKQGDISQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEEIA 709
Query: 523 GLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
L N +++ PEKP ++D ++ + + A HSQRC +L +AR ++E
Sbjct: 710 NLAPENPNIIEPEKPDTDDRDILKDYYRAKMHATNARTGYHSQRCFQNFQLEIARAYRNE 769
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
FY PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F
Sbjct: 770 T-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF-- 826
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
G +K S R F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+ P
Sbjct: 827 GFDKASFQEREQFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALEDP 886
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +++D
Sbjct: 887 TKFVSHLPVHQDGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQKD 946
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+ AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 947 AANGNET------AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 990
>gi|425767195|gb|EKV05770.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425769079|gb|EKV07586.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1288
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 225/653 (34%), Positives = 360/653 (55%), Gaps = 49/653 (7%)
Query: 181 RQVKQETEAWERMVDEYKE--LEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ 238
RQ + ET++ + + ++E E + +A + + G+ W L I++E +
Sbjct: 251 RQQRLETDSLDSALWRWREDNAERQKFGLNVASDEKRLNGIMSQWHTDLVARIKKELVLV 310
Query: 239 RT----------KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
+ +K++ Y ++ L D++A + + +M D+ +++ A
Sbjct: 311 KEALAARIVSLEQKERCEYGVFLQALDPDRLAALTLLSVMSTFSRQGMDKGIKLSILASV 370
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKL 348
+G ++ E+ +FL++ K+ ++ A + + +++ + R R SL+ +K+
Sbjct: 371 VGKELQDELIADTFLKRNKSMDSSRLKALKQTLANRKDKQGRLRWRSLV--------EKI 422
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP----DVRPAFRHRFKTI 404
E+ WG +Q K+G+ L+ +L+E + + PV D + ++PAF H ++
Sbjct: 423 NAENESILWGSRSQVKIGAVLMSMLVEVS--KAPVWTEDPATKKRILTMQPAFDHSYQI- 479
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
KR G + + ++E + R +L ++PM+ P+ W G GGY S
Sbjct: 480 ------NFGKRSGHIHMNSKLVEIVAREPPAELLARHLPMVCKPRPWTGPRSGGYKVYES 533
Query: 464 YVMRTH-GSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
++RT G Q LK+V + +K++ LD LG+T W++N+QV V+ W GG +
Sbjct: 534 NLVRTTPGELLQPAYLKAVLKDDGLKEIRAGLDVLGATGWKINQQVFDVMLEAWNDGGAV 593
Query: 522 AGLVDRN-DVLIPEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
L N D+ +PE+P + D ++W VR+ + + HS RC +L VAR +
Sbjct: 594 GKLAPLNPDLQVPEQPSPDADYATQKQWHHKVREIENLRSGFHSVRCFQNFQLEVARAFR 653
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+E FY PHN+DFRGRAYP+ P++N + +D RG+L F +G+ LG+SG+RWLKI +ANLF
Sbjct: 654 -KEVFYLPHNMDFRGRAYPLPPYMNQMGADNSRGLLLFDKGKALGESGMRWLKIQIANLF 712
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
G +K S R F NHL ++ DSA ++G RWWL AEDP+Q LAAC L AL+ S
Sbjct: 713 --GFDKASMSEREQFTMNHLDDVLDSANAGLHGRRWWLQAEDPWQLLAACCELRNALQLS 770
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P +SHLPIHQDGSCNGLQHYAALG + + A VNL ++P+DVY+ + V E +
Sbjct: 771 KPTEYVSHLPIHQDGSCNGLQHYAALGGDRVGAQQVNLEPSDRPSDVYTGVCEFVKEAIA 830
Query: 760 RD-SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+D +N D LA+ L +V RK+VKQTVMT+VYGVTF+GA Q+KR+L
Sbjct: 831 QDAANGD-------RLAQRLDGRVTRKIVKQTVMTNVYGVTFLGATRQVKRQL 876
>gi|322708298|gb|EFY99875.1| DNA-directed RNA polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1326
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 205/484 (42%), Positives = 293/484 (60%), Gaps = 39/484 (8%)
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRH 399
E K L+N +PW +A++GS L++ LI+ A+V +HP S +PAF H
Sbjct: 471 ETAKELENATREPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKQTIS--QKQPAFTH 528
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGL------DRSAKHMLIPYVPMLVPPKKWKGY 453
++ P + K+ GV+ + +++ L D AKH+ PM+V PK W+
Sbjct: 529 -----MQQP--RRGKKVGVLHYNSNLVQQLKKEPIGDYIAKHL-----PMIVEPKPWRQL 576
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSV---TGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
N+GG+L + +R +Q+ TG+ M +VF+ LD LG T WR+NK VL+V
Sbjct: 577 NEGGFLDSRTTFVRVKSGDVEQKLYTEAAIKTGD-MAQVFKGLDVLGKTAWRINKNVLNV 635
Query: 511 LESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCDT 568
+ W SG IA + N + IPE+P S D + W +V+ + HSQRC
Sbjct: 636 MMEAWNSGEEIANMPPLNPEFHIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRCFM 695
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R VL+FA G+ LG+ GL
Sbjct: 696 NLQLEIARAFRNQT-MYFPHNIDYRGRAYPMPTYLNHMGADHARAVLKFARGKELGERGL 754
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
RWLKIHLANL+ G++K S D R AF +++ I DSA NP+NGSRWWL AED +QCLAA
Sbjct: 755 RWLKIHLANLY--GLDKSSFDEREAFTNDNIPNIIDSASNPLNGSRWWLKAEDAWQCLAA 812
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C L AL+ P +S LP+HQDG+CNGLQHYAALG +T A VNL GE+PADVYS
Sbjct: 813 CFELKAALELPDPTKFVSQLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADVYS 872
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V + + +D+ + A +L ++ RK+VKQTVMT+VYGVTF GA++Q+
Sbjct: 873 AVADLVKQAIDKDAEAENE------FALVLQGKITRKVVKQTVMTNVYGVTFAGAKKQVC 926
Query: 809 RRLE 812
++++
Sbjct: 927 KQID 930
>gi|448089097|ref|XP_004196715.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|448093284|ref|XP_004197746.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359378137|emb|CCE84396.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
gi|359379168|emb|CCE83365.1| Piso0_003940 [Millerozyma farinosa CBS 7064]
Length = 1317
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 214/584 (36%), Positives = 329/584 (56%), Gaps = 51/584 (8%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K + YAP++ L+P K+ VI + +++ L G ++ +A + +G A+E E +
Sbjct: 460 KDRLYYAPYLILVPPKKMCVITILELLKLNSTGGIIDGMRTARAVISVGRALELEYK--- 516
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE---TKPWG 358
++ ++ E L K++ + + KR + +K E+ W
Sbjct: 517 ----------------SQRLMQAEGRSLSKKLKTTNQWKRFLRQRKDYNKEDPIANNEWD 560
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPP----DVRPAFRHRFKTILKHPGQKTTK 414
AK+GS L LLI A V PV D + ++PAF H ++ GQK
Sbjct: 561 YPIYAKVGSVLASLLIHVAKV--PVKGTDPTTGKTVRGMQPAFHHTYQFF---QGQKL-- 613
Query: 415 RYGVVEC-DPLVLEGLDRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
GV++ LV + + + P +PMLVPP+ W+ YN GGYLF + ++R S
Sbjct: 614 --GVLKVHKSLVRQLAGNELGNSVQPQLLPMLVPPRPWRSYNDGGYLFSQNNIVRIKDSA 671
Query: 473 KQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRN 528
+ L++ + N + +++ L+ LG+T W VN++V V+ +W +G +I +++
Sbjct: 672 ETTAYLRAASDMNNLDPIYDGLNVLGNTAWTVNRKVFDVISKVWNTGEEYLDIPPIIEEP 731
Query: 529 DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
D+ P PL+ + +E ++ VRKA SQRCDT KL +AR E+ ++PH
Sbjct: 732 DLPSP-LPLNAEPSEKADYQRRVRKAVNDAASARSQRCDTNYKLEIARGFIGEK-LFFPH 789
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGRAYP+ PH NHL +D+ R + F +G+ LG+ GLRWLKIHLAN++ GV+K
Sbjct: 790 NVDFRGRAYPISPHFNHLGNDMTRSLFLFWDGKKLGEQGLRWLKIHLANVY--GVDKAPL 847
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
D R+ FVE++L IFDSA+NP++G +WW + P+Q L+ C LSEA K P +SH+
Sbjct: 848 DERVKFVEDNLDNIFDSAKNPLDGRKWWEKGDKPWQVLSVCFELSEAYKLDDPTEYVSHI 907
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDG+CNGLQHYAALG + A VNL+ E+P DVY +A V + + ++ K
Sbjct: 908 PVHQDGTCNGLQHYAALGGDIEGARQVNLIPAERPQDVYKFVAGLVQKRVDAEAEKGNK- 966
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
A L D++ RK+VKQTVMT+VYGVTFVGA QI+++++
Sbjct: 967 -----YAIFLRDKITRKVVKQTVMTNVYGVTFVGAVLQIQKQID 1005
>gi|322694289|gb|EFY86123.1| DNA-directed RNA polymerase [Metarhizium acridum CQMa 102]
Length = 1414
Score = 364 bits (935), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 206/486 (42%), Positives = 297/486 (61%), Gaps = 39/486 (8%)
Query: 342 VMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAF 397
V E K L+N +PW +A++GS L++ LI+ A+V +HP S +PAF
Sbjct: 549 VSETAKELENATREPWSISIRAQVGSFLLKTLIDNAFVKVTMEHPTTKEPIS--QKQPAF 606
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGL------DRSAKHMLIPYVPMLVPPKKWK 451
H ++ P + K+ GV+ + +++ L D AKH+ PM+V PK W+
Sbjct: 607 TH-----MQQP--RRGKKVGVLHFNSNLVQQLKKEPVGDYIAKHL-----PMIVEPKPWR 654
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSV---TGNCMKKVFEALDTLGSTKWRVNKQVL 508
N+GG+L + +R +Q+ TG+ M +VF+ LD LG T WR+NK VL
Sbjct: 655 QLNEGGFLDSRTTFVRVKSGDVEQKLYTEAAIKTGD-MTQVFKGLDVLGKTAWRINKNVL 713
Query: 509 SVLESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRC 566
+V+ W SG IA + N + IPE+P S D + W +V+ + HSQRC
Sbjct: 714 NVMMEAWNSGEEIANMPPLNPEFDIPEEPDSSADPLLRRSWMQAVKAIENERSGMHSQRC 773
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L+FA G+ LG+
Sbjct: 774 FMNLQLEIARAFRNQT-MYFPHNIDYRGRAYPMPTYLNHMGADHARAILKFARGKELGER 832
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GLRWLKIHLANL+ G++K + D R AF +++ I DSA NP+NGSRWWL AED +QCL
Sbjct: 833 GLRWLKIHLANLY--GLDKSNFDEREAFTNDNISNIIDSATNPLNGSRWWLKAEDAWQCL 890
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AAC L AL+ P +S LP+HQDG+CNGLQHYAALG +T A VNL GE+PADV
Sbjct: 891 AACFELKAALELPDPTKFVSQLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADV 950
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V + + +D+ +K+ AL +L ++ RK+VKQTVMT+VYGVTF GA++Q
Sbjct: 951 YSAVADLVKQAIDKDAE---AKNEFAL---VLQGKITRKVVKQTVMTNVYGVTFAGAKKQ 1004
Query: 807 IKRRLE 812
+ ++++
Sbjct: 1005 VCKQID 1010
>gi|367011305|ref|XP_003680153.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
gi|359747812|emb|CCE90942.1| hypothetical protein TDEL_0C00530 [Torulaspora delbrueckii]
Length = 1321
Score = 364 bits (935), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 219/593 (36%), Positives = 336/593 (56%), Gaps = 46/593 (7%)
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
+ K + Y ++ L+ +K+ VI + +++ L G ++ +A + +G AIE E R
Sbjct: 460 KQNKTRQDYGAYLSLVDPEKMCVITILELLKLNSTGGVIEGMRTARAVIAVGKAIEMEFR 519
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-W 357
L+ +I D + K+ +++ NS + +K EE+K W
Sbjct: 520 SEQLLKS-----ELQIFKDVNRKSHEFKKYVQRAKNSF----------RSIKIEESKVVW 564
Query: 358 GRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPPDVR-PAFRHRFKTILKHPGQKTTKR 415
+ +AK+GS ++ +LI A V ++P PAF H ++ H G K
Sbjct: 565 PQAARAKIGSIMISMLIHVAKVDLEGIDPVTKQKVHGEAPAFSHGYQY---HNGSK---- 617
Query: 416 YGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
GV++ ++ L+ R + +PMLV P+ WK +N GGY + S ++R+ S +
Sbjct: 618 LGVLKIHRSLIHQLNGERLVASVQPQLLPMLVKPRPWKSWNSGGYYYTQSSLIRSKDSPE 677
Query: 474 QQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN---IAGLVDRND 529
Q LK+V+ + V++ L+ LG T W VN++V V+ +W SG + I G+ ++ D
Sbjct: 678 QMAYLKAVSNAGAIDTVYQGLNVLGETAWTVNRRVFDVMSEVWNSGKDFLEIPGIQEKLD 737
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L+P P D + ++WK ++ A K + R S RCD+ KL +AR E+ FY+PH
Sbjct: 738 -LLPAPPRESDPSVHREWKLKNKEIANKFSSNR-SVRCDSNYKLEIARAFLGEK-FYFPH 794
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
NLDFRGRAYP+ PH NHL +D+ RG+L F +G+ LG GL+WLK+HL+NLF G +K
Sbjct: 795 NLDFRGRAYPLSPHFNHLGNDMSRGLLIFWKGKRLGPRGLKWLKVHLSNLF--GFDKAPL 852
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R+A+ E HL ++ SAE+P+ G WW+ A+ P+Q LA CI ++EA K +P ISH
Sbjct: 853 ADRIAYAEAHLKDVKRSAEDPLAGDGWWMKADKPWQALATCIEINEAYKLPNPEDFISHQ 912
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDG+CNGLQHYAALG + A VNLV ++P DVY+ +A V ++ + K +
Sbjct: 913 PVHQDGTCNGLQHYAALGGDIEGATQVNLVPNDRPQDVYAHVAKLVQARLEAAAAKGDEQ 972
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
A+ L D++ RK+VKQTVMT+VYGVT+VGA QI+++L HI DDR
Sbjct: 973 ------AETLKDKITRKVVKQTVMTNVYGVTYVGATFQIEKQL---SHIFDDR 1016
>gi|366991923|ref|XP_003675727.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
gi|342301592|emb|CCC69362.1| hypothetical protein NCAS_0C03720 [Naumovozyma castellii CBS 4309]
Length = 1326
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 246/704 (34%), Positives = 375/704 (53%), Gaps = 69/704 (9%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
++K +K E RE + FN R+R ++ E W+ ++ KE I+KRL
Sbjct: 365 IFKTLKNDEERETFENILNDFNQDRQRALESRAADAARERWKHDFEDAKERGDISIQKRL 424
Query: 210 APNL------------PHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPAD 257
L IK S + + K K + AP++ L+ +
Sbjct: 425 NAKLWEWYNDMLPLVKEEIKKAEESIGAMTSSSSNKPPKCAAKKGSDSLSAPYLLLVNPE 484
Query: 258 KVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
K+ VI + +++ L G ++ +A + +G AIE E R L+ N +
Sbjct: 485 KMCVIAILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQLLKSESNIFK------ 538
Query: 318 TEEVLSKEKEL--LRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
EV K E L +R +S +V E K++ W + +AK+GS L+ LI
Sbjct: 539 --EVNKKSPEFKKLVQRARQSFRSNQV-EQSKIV-------WPQAIRAKIGSTLISTLIH 588
Query: 376 TAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD- 430
A V PV + PAF H ++ + GV++ ++ L+
Sbjct: 589 VAKVDVKGFDPVTKQEVYGK--APAFSHGYQYC-------KGSKLGVIKIHRSLINQLNG 639
Query: 431 -RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKK 488
R + +PMLV P+ W+ + GGY + S ++R+ S +Q LK+V+ + +
Sbjct: 640 ERLIASVQPQLLPMLVKPRPWRNWRSGGYFYSQSTLIRSKESPEQLAYLKAVSDADVIPD 699
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQK 546
V+ L+ LG T W +NK+V V+ +W +G + + + L+P P D +E +K
Sbjct: 700 VYTGLNALGETAWTINKKVFDVISQVWNTGDEFLEIPEIQHDMNLLPPPPRDSDPSEFRK 759
Query: 547 WKWSVRK-AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
WK ++ A KI++ R S RCDT KL +AR E+ FY+PHNLDFRGRAYP+ PH NH
Sbjct: 760 WKLQNKELANKISKNR-SVRCDTNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNH 817
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +D+ RG+L F +G+ LG GL WLKIHL+NL+ G++K D R+ FVE+HL EI +S
Sbjct: 818 LGNDLSRGLLIFWKGKKLGPHGLVWLKIHLSNLY--GMDKAPFDERVRFVEDHLQEIKES 875
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
AENP+ +WW A+ P+QCLA CI L+EALK +P ISH P+HQDG+CNGLQHYAAL
Sbjct: 876 AENPLTTGKWWKDADKPWQCLATCIELTEALKLDNPEEFISHQPVHQDGTCNGLQHYAAL 935
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
G + A VNL+ ++P DVY+ +A V + +++ + + +K AKIL+D++ RK
Sbjct: 936 GGDVEGAEQVNLIPHDRPQDVYAHVARLVTKRLEKAALQGDAK------AKILVDKISRK 989
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
+VKQ VMT+VYGVT+VGA QI+++L + D ++ F + Y
Sbjct: 990 VVKQPVMTNVYGVTYVGATFQIEKQLSK--FFPDRKECFDLSKY 1031
>gi|50306641|ref|XP_453294.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642428|emb|CAH00390.1| KLLA0D05247p [Kluyveromyces lactis]
Length = 1263
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 220/607 (36%), Positives = 344/607 (56%), Gaps = 66/607 (10%)
Query: 229 EAIEREQKM-QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
+ +E+EQK + + Y P++ L+ +K+ VI + +++ L +G ++ +A +
Sbjct: 391 DLLEKEQKAPNKQNSDRLKYGPYLLLVEPEKMCVITILELLKLQSSGGVTEGMRTARAVL 450
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
+G +IE E R +E++L E ++ K VN KR E +
Sbjct: 451 SVGRSIEMEFR-------------------SEKLLRSENKMF-KEVN-----KRSHEFKM 485
Query: 348 LLKNEETK-----------PWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSPP-DVR 394
++N +T W D +AK+GS L+ +LI + V V+P
Sbjct: 486 FVQNAKTALRNMHVEENMIQWPSDVKAKIGSILISMLIHVSKVTVEGVDPITKEKVVGEA 545
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKG 452
PAF H F+ ++ + G+++ ++ L +R ++ ++PMLV P+ W
Sbjct: 546 PAFCHTFQ-------YRSGTKIGILKIHRSLVNQLSAERMTTNIQPQHLPMLVRPRPWTN 598
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVL 511
+N GGY + S ++R+ S +Q +K+V+ + V+E L+ LG+T W +N+++ +++
Sbjct: 599 WNSGGYNYSQSTLIRSRDSPEQIAYIKAVSEQGSIDNVYEGLNVLGNTPWTINEKLFNIV 658
Query: 512 ESIWVSGGNIAGLVDRNDVL----IPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRC 566
+W +G G +D VL P +P SED +++W+ R+ + S RC
Sbjct: 659 SEVWNTG---EGFLDIPPVLDNFEFPPQPARSEDPLILKEWRNKCRQMSNEFKGFKSYRC 715
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
D+ KL +AR E+ FY+PHN+DFRGRAYP+ PH NHL +D+ R +L F G+ LG S
Sbjct: 716 DSNYKLEIARAFLGEK-FYFPHNMDFRGRAYPLAPHFNHLGNDMTRSLLIFWNGKKLGTS 774
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GL+WLKIHLANL+ G++K S + R+ F + HL EI +SAE+P++G+RWW A+ P+Q L
Sbjct: 775 GLQWLKIHLANLY--GMDKCSFEERVEFADTHLKEIRESAEHPLDGTRWWTKADKPWQFL 832
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
A CI L+EALK +P + ISH P+HQDG+CNGLQHYAALG + A VNLV ++P DV
Sbjct: 833 ATCIELNEALKLDNPENFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLVPSDRPQDV 892
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
Y+ +A V KR N + Q A IL D + RK+VK+TVMT+VYGVTFVGA +Q
Sbjct: 893 YAFVAKLV---TKRLENSAAAGDEQ---AAILKDLISRKVVKRTVMTNVYGVTFVGAADQ 946
Query: 807 IKRRLEE 813
I + L++
Sbjct: 947 IMKELDQ 953
>gi|438813|gb|AAA33587.1| mitochondrial RNA polymerase [Neurospora crassa]
gi|1589165|prf||2210334A cyt-5 gene
Length = 1422
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 217/601 (36%), Positives = 333/601 (55%), Gaps = 46/601 (7%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHI-ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
+E E+ +KK K Y P I + P AV ++ + L M H+ + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMRSHKGSTIASL- 478
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVM 343
HI E++IR+ +K + K+ + + + +LR K + S +
Sbjct: 479 -ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMA 533
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRH 399
++ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 534 DSNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSH 591
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGY 458
+ + K+ G + + V+E L R L ++PM+ PP W + KG Y
Sbjct: 592 VMQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAY 644
Query: 459 LFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
L + V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W
Sbjct: 645 LETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWN 704
Query: 517 SGGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELK 571
SG +A + + + L PE +ED T + W +++ K I ER SQRC +
Sbjct: 705 SGKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGFDSQRCFMNFQ 761
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L +AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWL
Sbjct: 762 LEIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWL 820
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
K+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C
Sbjct: 821 KVHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFE 878
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 879 LAAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVA 938
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++
Sbjct: 939 KLVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQI 992
Query: 812 E 812
E
Sbjct: 993 E 993
>gi|336471080|gb|EGO59241.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2508]
gi|350292162|gb|EGZ73357.1| mitochondrial DNA-directed RNA polymerase [Neurospora tetrasperma
FGSC 2509]
Length = 1416
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 213/600 (35%), Positives = 331/600 (55%), Gaps = 43/600 (7%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 416 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 475
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K + + + +LR K + S + +
Sbjct: 476 ITHIAKFAEEDIRV----QKAEALISKHNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 531
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 532 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 589
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 590 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 642
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 643 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 702
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 703 GKKVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 759
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 760 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 818
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 819 VHLANVY--GFDKASLQERQDFADENIENIRDSVINPLNGNQWWLQAEDPWQCLATCFEL 876
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 877 AAALELEDPTQYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 936
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGA++Q+ +++E
Sbjct: 937 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGAKKQVLKQIE 990
>gi|310796543|gb|EFQ32004.1| DNA-dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1395
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 225/607 (37%), Positives = 332/607 (54%), Gaps = 63/607 (10%)
Query: 229 EAIEREQKMQRTKKQKAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
EA E K + Y P + L P+ AV ++ + +AG DR + + A
Sbjct: 420 EAAEATPKKTPEDYDRCVYGPFLRLSTPSRLSAVTILGTLSSTAIAG-VDRGMPISIAIS 478
Query: 288 HIGMAIEQEIRIHSFLE---KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
++ E++IR K+K R+ I+ E S E E
Sbjct: 479 NLARLAEEDIRAQLAANQKLKSKPKSRRVIMTKRERKTSPE------------------E 520
Query: 345 AQKLLKNEETK-------PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDV 393
KLL + E K PW +AK+G+ L+ LIETA + +HP S
Sbjct: 521 PAKLLSDSEAKASPIPDTPWPPAVKAKVGAALLSALIETAKIKVVKEHPETKTLIS--QF 578
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKG 452
+PAF H + K K+ G++ + ++ + R + L ++PM+V P+ W+
Sbjct: 579 QPAFSHVSQL-------KRGKKIGMMLLNKELVNLMKREPQGDYLAKHLPMVVEPEPWQA 631
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
++KGG+L + ++R K Q+ ++ M +VF+ LD LG T WRVN VL+V
Sbjct: 632 FDKGGFLESRANLVRIKQGGKDQKLYSEAAIARGDMDQVFKGLDVLGKTAWRVNTPVLNV 691
Query: 511 LESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQER---HSQR 565
+ W +G +A L N D+ +P +P S+D + W VR K + ER HS R
Sbjct: 692 MLEAWNTGEALANLPALNPDIPVPPEPEASDDPMAHRNW---VRAVKAADNERGGLHSVR 748
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C +L +AR +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA G+ LG+
Sbjct: 749 CFMNFQLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGILRFARGKELGE 807
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GL+WLK+HLAN+F G +K S R +F ++L IFDSA P++G+RWWL AEDP+QC
Sbjct: 808 DGLKWLKVHLANVF--GFDKASLKDRESFAMDNLVNIFDSANKPLDGNRWWLKAEDPWQC 865
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LA C L AL+S P +SHLPIHQDG+CNGLQHYAALG ++ A VNL G+KPAD
Sbjct: 866 LAVCYELKAALESPEPTKFVSHLPIHQDGTCNGLQHYAALGGDSWGARQVNLEPGDKPAD 925
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
VYS +A V E + +D+ + ++ ++ RK+VKQTVMT+VYGVTF GA++
Sbjct: 926 VYSAVANIVKEHIAKDAEAGNA------FGLVMNGKITRKVVKQTVMTNVYGVTFAGAKK 979
Query: 806 QIKRRLE 812
Q+ ++L+
Sbjct: 980 QVCKQLD 986
>gi|430811134|emb|CCJ31388.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 1054
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 225/588 (38%), Positives = 328/588 (55%), Gaps = 48/588 (8%)
Query: 237 MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
+ + +Y I+LL +K++ I + +++ L G + ++ +A + +G +IE+E
Sbjct: 228 INNVNNDRLSYGVFIQLLAPEKLSTITILEVLRLHSTGGIAQGMRTARAILSVGKSIEKE 287
Query: 297 IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK------ 350
EVL K K L K VN + Q +L+
Sbjct: 288 Y--------------------ASEVLKKNKNFLGKNVNLSQIFGNPRQFQTMLQKTQNNI 327
Query: 351 NEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-PAFRHRFKTILKHP 408
N E P W +AK+GS L+ +LI A + + PAF H ++
Sbjct: 328 NFEINPKWPTVVKAKIGSILISILIHVAKIDITTETEKGDTISQKAPAFYHTYQ------ 381
Query: 409 GQKTTKRYGVVECDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++ GV++ + V++ L + + + P +PMLV PK W ++ GGY S VM
Sbjct: 382 -YQKGRKLGVIKLNDQVMKQLGSQPLRGNIHPRLLPMLVEPKPWISWDSGGYYLSKSTVM 440
Query: 467 RTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R+ S +Q + LK + N +K +FE LD LGST W +N V +V+ +W SG AG+
Sbjct: 441 RSRDSIEQIQYLKIASERNNLKSIFEGLDVLGSTAWAINIPVFNVVIEVWNSGLEFAGIP 500
Query: 526 -DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
+++ P +P S+D + W+ R+ + Q + S RCD KL +AR E+
Sbjct: 501 PAESNIAFPPRPTSKDPADKISWQIQCRQIARDAQNKQSIRCDINYKLEIARAFLHEK-M 559
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHNLDFRGRAYP+ PH NHL +D+CRG+L F E + +G+SGLRWLKIHLAN+ G +
Sbjct: 560 YFPHNLDFRGRAYPIPPHFNHLGNDLCRGLLTFHEAKEIGESGLRWLKIHLANI--CGFD 617
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
K S R AF +L IFDSA+NP+ GS WWL +DP+Q LAAC L+ AL+ PH
Sbjct: 618 KESFLEREAFTVENLKNIFDSADNPLKGSGWWLKFDDPWQTLAACFELTAALRFPDPHKF 677
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
S LPIHQDG+CNGLQHYAALG + L A VNL +P DVY+ +A V+E +++D+ +
Sbjct: 678 KSRLPIHQDGTCNGLQHYAALGGDILGARQVNLEPSNRPYDVYTRVAELVNEQVQKDAKE 737
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
H LA +L D++ RK+VKQTVMT+VYGVT+VGAR QI +L+
Sbjct: 738 --GNH----LAVLLKDKIARKIVKQTVMTNVYGVTYVGARNQILNQLK 779
>gi|147865920|emb|CAN83054.1| hypothetical protein VITISV_027927 [Vitis vinifera]
Length = 1299
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 178/271 (65%), Positives = 198/271 (73%), Gaps = 66/271 (24%)
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS---------------- 573
V +PEKP +ED+TE+Q WKW+ RKAKKINQERHS RCDTE+KLS
Sbjct: 934 VPLPEKPSTEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSLMIKPGFEDSLAQMKY 993
Query: 574 ---------------------------------VARRMKDEEGFYYPHNLDFRGRAYPMH 600
VAR+MKDEEGFYYPHNLDFRGRAYPMH
Sbjct: 994 WRGSVKSRLLWLPSLEELCSFVSFSAKQXHFEQVARKMKDEEGFYYPHNLDFRGRAYPMH 1053
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
PHLNHLSSD+CRGVLEFAEGRPLGKSGLRWLKI LANL++GGVEKLS+DGRLAFV+NHL
Sbjct: 1054 PHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVDNHLD 1113
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
++FDSA+NP+NG+RWWLTAEDPFQCLAACINLSEAL+SSSPH+VISHLPIHQ
Sbjct: 1114 DVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQ-------- 1165
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
LEA+AVNLVAGEKPADVYSEIA
Sbjct: 1166 ---------LEASAVNLVAGEKPADVYSEIA 1187
>gi|150865988|ref|XP_001385433.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
gi|149387244|gb|ABN67404.2| mitochondrial DNA-directed RNA polymerase [Scheffersomyces stipitis
CBS 6054]
Length = 1251
Score = 363 bits (931), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 246/702 (35%), Positives = 385/702 (54%), Gaps = 91/702 (12%)
Query: 154 FLKGLYKRIKLQEYREMKK---RKFNLLRRR--QVKQETEAWERMVDEYKELEAKMIEKR 208
F K +YK +K +E RE FNL R+R +V+ A E+ E++E++ KR
Sbjct: 294 FFK-VYKTLKTEEQREKFNSGLHSFNLTRQRRLEVRGADGAKEKWKHEFEEMQ-----KR 347
Query: 209 LAPNLPHIKGL---FLGWFGPLSEAIEREQKM------------------QRTKKQKAAY 247
A LP KGL W+ L +++E +M ++ K + Y
Sbjct: 348 GA--LPLNKGLNAQLFQWYKNLLPYVKKEAEMCQKLMDGKVSKTDLSPDEKKLYKDREYY 405
Query: 248 APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTK 307
AP++ L+P +K+ VI + +++ L G ++ +A + +G A+E E +
Sbjct: 406 APYMVLVPPEKMCVITILELLKLNSTGGIVDGMRAARALISVGKAVELEYK--------- 456
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK--LLKN-EETKPWGRDTQAK 364
++ +L E + K+V S + KR++ +K +++N +++ W AK
Sbjct: 457 ----------SQSLLKSEIKAFSKKVKSTNQWKRILSNKKNNIIENPDDSTDWSYTVYAK 506
Query: 365 LGSRLVELLIETAYVQHPV---NPA-DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
LG+ L LL+ A V PV NP + +PAF H ++ + GQK GV++
Sbjct: 507 LGAVLTNLLLFVAKV--PVKAHNPTTGKTITGSQPAFFHTYQFL---NGQKL----GVIK 557
Query: 421 CDPLVLEGL-DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+++ L RS + + P +PMLV P++W YN GGYL+ S ++R S + L
Sbjct: 558 LHKEIIKQLAGRSLSNAVQPQLLPMLVAPREWHSYNDGGYLYSRSTLVRIKDSAETTAYL 617
Query: 479 KSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIP 533
+ GN + +V++ L+ LG T W VN++V ++ W SG +I +++ + +P
Sbjct: 618 RKAADLGN-LNEVYDGLNVLGKTPWTVNRRVFEIITRYWNSGEEFLDIPPIMEEPN--LP 674
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
E PL D QK+++ + +N+ SQRCDT KL +AR E+ F+ PHN+D
Sbjct: 675 E-PLPVDAEPAQKFEYQRKLRSALNEAASLRSQRCDTNYKLEIARGFLGEKVFF-PHNVD 732
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ PH NHL +D+ R + F EGR LG+ GL WLKIHLAN++ GV+K + R
Sbjct: 733 FRGRAYPISPHFNHLGNDLTRSLFLFWEGRELGERGLEWLKIHLANVY--GVDKAPLNER 790
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+ FV ++L +F+SA NP + WW AE P+Q L C L EA K +P +SH+PIH
Sbjct: 791 VQFVNDNLENVFESARNPYDTDAWWKKAEKPWQALGVCFELEEAYKLENPTQYVSHIPIH 850
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDG+CNGLQHYAALG + A VNL+ ++P DVY +A V + + ++ ++ +K+
Sbjct: 851 QDGTCNGLQHYAALGGDIEGARQVNLLPADRPQDVYKYVASLVQKRIDAEA-EEGNKY-- 907
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
A L D++ RK+VKQTVMT+VYGVTFVGA QIK+++++
Sbjct: 908 ---AVFLQDKITRKVVKQTVMTNVYGVTFVGATAQIKKQIDQ 946
>gi|429848594|gb|ELA24058.1| DNA-directed RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1383
Score = 362 bits (930), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 200/485 (41%), Positives = 289/485 (59%), Gaps = 34/485 (7%)
Query: 344 EAQKLLKNEETK-------PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPD 392
EA+ LL N+ + PW + KLG+ L+ L+ETA + + PV
Sbjct: 522 EAEPLLGNDSARDKRLVEAPWPVAVKVKLGAMLLTALLETAKIKVVQEQPVTQTLIH--Q 579
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWK 451
+PAF H + K K+ G++ + ++ + + L ++PM+VPP+ W
Sbjct: 580 YQPAFSHALRL-------KRGKKIGMILLNKTLVTIMKSEPRGDYLAKHLPMVVPPEPWT 632
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
+NKGG+L S V+R K+Q+ A ++T M +VF+ LD LG T WR+N V +
Sbjct: 633 DFNKGGFLESSSAVVRVKQGDKEQKLYAEAAITRGDMDQVFKGLDILGKTAWRINTPVFN 692
Query: 510 VLESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W +G A + + D+ P +P LS+D + W +V+ + HSQRC
Sbjct: 693 VMLEAWNTGKAFANFPELSPDIAYPPEPELSDDPMARRNWIRTVKAIENKKGALHSQRCF 752
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L +AR +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+G+ LG+ G
Sbjct: 753 MNFQLEIARAFRNQ-SFYFPHNVDFRGRAYPLPTYLNHMGADHVRGLLRFAKGKELGERG 811
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
L+WLK+HLAN++ G +K S R +F +L IFDSA NP+ G+ WWL AEDP+QCLA
Sbjct: 812 LQWLKVHLANVY--GFDKASLKDRESFAMENLVNIFDSANNPLTGNMWWLKAEDPWQCLA 869
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L AL+S P +SHLP+HQDG+CNGLQHYAALG +T A VNL +KPADVY
Sbjct: 870 TCYELKAALESPEPTKYVSHLPVHQDGTCNGLQHYAALGGDTWGAEQVNLAPSDKPADVY 929
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
S +A V + + +D KHP +A L ++ RK+VKQTVMT+VYGVTF GAR+QI
Sbjct: 930 SAVANIVKDHIAKDVE---VKHP---IAMGLNGKITRKVVKQTVMTNVYGVTFAGARKQI 983
Query: 808 KRRLE 812
++L+
Sbjct: 984 CKQLD 988
>gi|428185822|gb|EKX54674.1| RNA polymerase, single subunit, mitochondrial [Guillardia theta
CCMP2712]
Length = 1194
Score = 362 bits (929), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 220/624 (35%), Positives = 362/624 (58%), Gaps = 60/624 (9%)
Query: 227 LSEAIEREQKMQRTKKQKAAY-APHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+ ++I + Q + + + P + LPA K+AVI +H+++ +++G V V+A
Sbjct: 435 MEQSISKIQTLHESDDEGIGLIGPILMSLPASKIAVITIHELLSSLLSGGGQ--VHFVRA 492
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
A +G I+ E+ LE K K + +++ +R+++L K+ V +
Sbjct: 493 ARTVGEGIQAELG----LEHVKKAKNRFLLSS-------------RRLSALCKAHDVRKL 535
Query: 346 QKLLKNEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTI 404
KLL E++P W Q K+G++L+++L+ +A + A H +
Sbjct: 536 NKLLSRLESQPLWDARMQVKVGAKLIQILMNSAKYKGSA------------AVTHVVQAQ 583
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGL----DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+ + G + + G + D +L+ L D A H + +PM++ P W ++ G Y+
Sbjct: 584 MSNKGMR---KKGFLALDQEILQDLEKQHDSVAAHNPL-LLPMIIRPFPWMSFDVGCYIQ 639
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
+ VMR Q+E+ ++ + + +++ ALD L T W +N+++L+V++ W+
Sbjct: 640 ARTKVMRIVDKGLQEESCRN---HDLSRIYAALDVLSGTGWCINRRLLNVVQHAWLDDMI 696
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI---NQERHSQRCDTELKLSVARR 577
+ + ++D +PE L D + + R+ K++ N++ HS RC +L VA
Sbjct: 697 LGEIPQKDDFAVPE--LDPDCIDAAESYSQYREKKRVEQRNKDLHSLRCSLINQLHVATT 754
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
M D + F++PHNLDFRGRAYP+ PHLNHL SD+CRG+L+F++ +PLGK G WLK+HLAN
Sbjct: 755 MSDFKEFFFPHNLDFRGRAYPIPPHLNHLGSDICRGLLKFSKKKPLGKKGFYWLKVHLAN 814
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS--RWWLTAEDPFQCLAACINLSEA 695
LF G K+S+D R+ + E + +I SA+NP++ + ++WL+A+DP+Q LA + + EA
Sbjct: 815 LF--GENKISYDDRVKWTEERMSQILHSAKNPLDSASRKFWLSADDPWQALATSMEIQEA 872
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
++S P + +S+LP+HQDGSCNGLQHYAALG + + VNLV GEKP+D Y+ + RV
Sbjct: 873 IESGDPSTYLSNLPVHQDGSCNGLQHYAALGLDEIGGEQVNLVPGEKPSDPYTTVCNRVL 932
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
E + D +DPS ++K++ +V RK+VKQTVMT+VYGVTF+GAREQI RL E
Sbjct: 933 EALDMDL-RDPSSADHE-VSKLVDKRVSRKVVKQTVMTTVYGVTFIGAREQIYNRLYEAY 990
Query: 816 HI--TDDRQ---LFAAACYAAKVS 834
I T++ Q L+ A+ Y AK++
Sbjct: 991 GIPGTNELQENDLYRASMYLAKLT 1014
>gi|340516609|gb|EGR46857.1| predicted protein [Trichoderma reesei QM6a]
Length = 1298
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 229/666 (34%), Positives = 359/666 (53%), Gaps = 59/666 (8%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGL----FLGWFGPLSEAIER 233
L R + E W + K L+ + + LAP+ H +G W + I +
Sbjct: 276 LERDTISSAIEKWRL---DNKTLQKRGVTTALAPS--HKEGSMSQNLASWMSAMETRIYQ 330
Query: 234 EQKM---QRTKKQKA-------AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVV 283
E ++ KK K+ Y P I+ ++A + + ++ L ++ + +
Sbjct: 331 ELRLIEQSEAKKSKSDKDLTRCIYGPFIQQGDPARLAAVTILSVINLGTVLGVEKGLPIS 390
Query: 284 QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR-- 341
+ HI A++++I ++ +K +R + V K+K K+ +S K
Sbjct: 391 RLITHIAKAVQEDIEMY---QKELAERRARRERKLRFVGGKDKA--SKKASSKDAGKEEE 445
Query: 342 ------VMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP--PDV 393
E Q ++ PW +A++GS L+++L+E+A + V ++
Sbjct: 446 PPVLVDTTEQQSAMEENSRSPWSLQIKAQVGSILLQMLMESAKINVVVERSESKELISQY 505
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKG 452
+PAF H +++L+ K+ G + + ++E L R + ++PM+V PK W+
Sbjct: 506 QPAFNH--QSVLRK-----GKKVGALFFNTRLVEQLKREPVGDFIAKHIPMVVEPKPWQS 558
Query: 453 YNKGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ +GG+L + +R +Q+ ++ M +VF+ LD LG T W +NK L+V
Sbjct: 559 FTEGGFLDSTTSFVRVKPGDVEQKLYSNAAIKRGDMTQVFKGLDVLGKTPWIINKDTLNV 618
Query: 511 LESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRC 566
+ W SG IA + N ++ IP +P S V+K W +R K I ER HSQRC
Sbjct: 619 MMEAWNSGEEIANIPPLNPNLTIPPEPDSSADPLVRK-NW-IRAVKAIENERSGLHSQRC 676
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L+FA G+ LG
Sbjct: 677 FMNLQLEIARAFRNQT-IYFPHNVDYRGRAYPMPTYLNHMGADHARAILKFARGKELGVR 735
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GLRWLKIHLAN++ G++K S D R AF + ++ I DSA NP+NGSRWWL EDP+QCL
Sbjct: 736 GLRWLKIHLANVY--GLDKASFDEREAFADENVANIIDSATNPLNGSRWWLKGEDPWQCL 793
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
+AC L AL+ P +SHLP+HQDG+CNGLQHYAALG +T A VNL G++PADV
Sbjct: 794 SACFELKAALELPDPTKFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDRPADV 853
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V + + +D K A+ L ++ RK+VKQTVMT+VYGVTF GA++Q
Sbjct: 854 YSAVADLVKQAIAKD------KENGNAFAEALDGKITRKVVKQTVMTNVYGVTFSGAKKQ 907
Query: 807 IKRRLE 812
I ++++
Sbjct: 908 ICKQID 913
>gi|89148144|gb|ABD62815.1| mitochondrial single-subunit RNA polymerase [Vermamoeba
vermiformis]
Length = 992
Score = 361 bits (927), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 234/691 (33%), Positives = 369/691 (53%), Gaps = 64/691 (9%)
Query: 180 RRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM-- 237
+ Q+ E EA ER ++KEL +++ L L WF PL + ++ E+++
Sbjct: 149 KEQLYLEMEAVEREAKKFKELVDDVLKLNRGACLDPGTEFLLQWFQPLVKLLDLEKQLSL 208
Query: 238 ------QRTKKQKAA------------YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
Q + A Y H + +DK+AVIV+H+++G E
Sbjct: 209 ADPGVHQELRASVEALGVLYNEQYLHEYHAHTNEVASDKLAVIVIHELIGAAAGLKEQSP 268
Query: 280 VQ-VVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEE-----VLSKEKELLRKRV 333
V+ VVQ I A++ E+ ++ +N + D+ E V +K+K KRV
Sbjct: 269 VRSVVQ---QISEAVQGEVNWQDLKDELENPAESRATPDSAENPSGTVPAKKK----KRV 321
Query: 334 NSLIKSKRV-MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV--QHPVNPADYSP 390
+ R+ A K+L +E W R + +G+RL+ LL+ A + + PV ++
Sbjct: 322 VNFTSVNRLNRRALKVLGSEAL--WSRGLKEFMGARLLALLLSVAQLREEDPVTGIFHA- 378
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYG--VVECDPLVLEGLDRSAKHML--IPYVPMLVP 446
RPAF +T + G +T V V D H I PM +P
Sbjct: 379 ---RPAFEVSHRTQHRKEGMDSTHNPSRLSVSASEAVRARFDAMMTHFFHFIRQYPMQIP 435
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
P+ W ++GGYL + + R +Q L + + + ++E L+ LG T WR+ ++
Sbjct: 436 PRPWDSPDRGGYLAVQVPIFRYQSYEEQFRPLFRKSDD-LAVIYEGLNALGETPWRIYQR 494
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRC 566
V V++ W GG++A + DR D P+ + + +W ++K ++N + S R
Sbjct: 495 VYHVVKRAWEQGGDLADIPDRRD---KPYPMPTALGKDSRWYRQLKKIDQLNYDLVSLRA 551
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
D LK+ VA + D+ Y+PHN+DFRGR YP+ PHLNH+ SD+ RG+L FA+G+PLG+
Sbjct: 552 DFLLKMEVAEKFMDKT-LYFPHNMDFRGRVYPVPPHLNHMGSDMSRGLLWFADGKPLGER 610
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GL WL+I LANL+ G +K+ RL FV + +I+ A+ P+ RWW+ A+ P+Q L
Sbjct: 611 GLHWLRIQLANLY--GFDKVPFSDRLDFVSKNQDKIYSCAQRPLE-DRWWVAADSPWQFL 667
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AAC A+ S+ PHS +SHLPI QDG+CNGLQHYAALG + A +VNL+ ++P DV
Sbjct: 668 AACFEYYNAMHSADPHSYVSHLPIQQDGTCNGLQHYAALGGDEQGAKSVNLLPSDRPQDV 727
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS++A V + + RD+ +A++ +VDRK+VKQTVMTSVYGVTF+GAR+Q
Sbjct: 728 YSDVAELVAQRIHRDAENG------VAVAQLSKGRVDRKVVKQTVMTSVYGVTFIGARQQ 781
Query: 807 IKRRLEEK---GHITDDRQLFAAACYAAKVS 834
I +++ H+TD+ +++ A+ Y A+++
Sbjct: 782 ITNAMKDHRLLTHLTDN-EMYQASQYIAQLT 811
>gi|367000748|ref|XP_003685109.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
gi|357523407|emb|CCE62675.1| hypothetical protein TPHA_0D00310 [Tetrapisispora phaffii CBS 4417]
Length = 1322
Score = 361 bits (927), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 220/596 (36%), Positives = 341/596 (57%), Gaps = 48/596 (8%)
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+ E++ + R + + YAP+ L+ +K+ VI + +++ L G ++ +A + +
Sbjct: 454 STEKKSTVSRQNRLRMEYAPYFTLVDPEKMCVITILELLKLNSTGGIIEGMRTARAVIAV 513
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G AIE E R L K +++ K+I K+ + L++ V S R +
Sbjct: 514 GKAIEMEFRSEQLL-KNESHIFKEI---------KQSQNLKRFVRSAKSRFRS------I 557
Query: 350 KNEETKP-WGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTI 404
K E++K W + +AK+GS ++ LI A ++ PV PAF H ++
Sbjct: 558 KIEQSKIIWSQPARAKIGSIMISNLINVAKIEVGGMDPVTKEKVYGE--VPAFSHSYQY- 614
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP 462
H G K GV++ ++ L+ R + +PMLV P++WK + GGY +
Sbjct: 615 --HNGLK----LGVLKIHKSLVHQLNGERMVAAVQPQLLPMLVAPREWKNWKCGGYYYTQ 668
Query: 463 SYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG-- 519
S ++R+ S +Q LK+V+ + +V+ L+ LGST W VN+++ +V+ +W +G
Sbjct: 669 STLIRSKDSPEQVAYLKAVSDAGAIDRVYHGLNVLGSTPWTVNRKIFNVISEVWNTGKPF 728
Query: 520 -NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVARR 577
+I G+ + + L+P D + +++WK + A K + R S RCD+ KL +AR
Sbjct: 729 LDIPGIQNTLN-LLPPPAKDADPSIIRQWKLKNKDIANKFSSNR-SVRCDSNYKLEIARA 786
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLK+HL+N
Sbjct: 787 FLGEK-IYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWRGKQLGASGLKWLKVHLSN 845
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK 697
L+ G +K S + R+ F E ++ I DSAENP+NG WW +A+ P+Q L+ CI L+EA K
Sbjct: 846 LY--GFDKASLEDRVRFAEENMENIKDSAENPLNGKGWWKSADKPWQALSTCIELNEAFK 903
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
+P ISH P+HQDG+CNGLQHYAALG + A VNL +KP DVY +A V E
Sbjct: 904 LENPEDFISHQPVHQDGTCNGLQHYAALGGDCEGAKQVNLKPSDKPMDVYKYVANLVVER 963
Query: 758 MKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+K+++ K AK+L D++ RK+VKQTVMT+VYGVT+VGA QI ++L +
Sbjct: 964 LKKEAAGGDEK------AKVLQDKITRKVVKQTVMTNVYGVTYVGATFQIDKQLSD 1013
>gi|358383250|gb|EHK20918.1| hypothetical protein TRIVIDRAFT_171102 [Trichoderma virens Gv29-8]
Length = 1317
Score = 361 bits (927), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 214/576 (37%), Positives = 329/576 (57%), Gaps = 31/576 (5%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y P ++ ++A + + ++ L ++ + + + HI A++ + ++
Sbjct: 361 YGPFVQQGEPARLAAVTILSVINLGTVLGVEKGIPISRLITHIAKAVQDDTEMYQKELAE 420
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLG 366
+ +R++ + + KE + N + E QK ++ +PW +A++G
Sbjct: 421 RKARRQRKLRFVGKPDKSGKEANGQDANPALLD--ATEQQKTMEENSREPWSIQIKAQVG 478
Query: 367 SRLVELLIETAYVQHPVNPADYSPPDV---RPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
S L+++LIE+A V + V S + +PAF H +T+L+ K+ G + +
Sbjct: 479 SILLQMLIESAKV-NVVAEGSTSKELISQYQPAFNH--QTLLRK-----GKKVGALFFNT 530
Query: 424 LVLEGLDRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALK--S 480
++E L R I ++PM+V PK W +++GG+L + ++R +Q+ +
Sbjct: 531 HLVEQLKREPMGDFIAKHLPMVVEPKPWTSFSEGGFLDSKTSLVRVKPGDVEQKLYSNAA 590
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEKPLSE 539
+ M +VF+ LD LG T W +NK L+V+ W SG IA + N L P +P S
Sbjct: 591 IKRGDMTQVFKGLDILGKTAWIINKDTLNVMMEAWNSGEEIADIPPLNPKLEAPTEPDSS 650
Query: 540 DMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
V+K W +R K I ER HSQRC L+L +AR +++ Y+PHN+D+RGRA
Sbjct: 651 ADPLVRK-NW-IRAVKAIENERSGLHSQRCFMNLQLEIARAFRNQT-IYFPHNVDYRGRA 707
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YPM +LNH+ +D R +L+FA+G+ LG GLRWLKIHLAN++ G++K S D R AF +
Sbjct: 708 YPMPTYLNHMGADHARAILKFAKGKELGVRGLRWLKIHLANVY--GLDKASFDEREAFSD 765
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
++ I DSA NP+ GSRWWL EDP+QCL+AC L AL+ P ISHLP+HQDG+C
Sbjct: 766 ENVANIIDSATNPLGGSRWWLKGEDPWQCLSACFELKAALELPDPTKFISHLPVHQDGTC 825
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NGLQHYAALG +T A VNL GE+PADVYS +A V E + +D K + A+
Sbjct: 826 NGLQHYAALGGDTWGAKQVNLEPGERPADVYSAVASLVKEAIAKDMEKGNA------FAQ 879
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
L ++ RK+VKQTVMT+VYGVTF GA++QI ++++
Sbjct: 880 ALNGKITRKVVKQTVMTNVYGVTFAGAKKQICKQID 915
>gi|328350537|emb|CCA36937.1| DNA-directed RNA polymerase,mitochondrial [Komagataella pastoris CBS
7435]
Length = 1329
Score = 361 bits (927), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 228/691 (32%), Positives = 363/691 (52%), Gaps = 50/691 (7%)
Query: 155 LKGLYKRIKLQEYREMKKRKFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
+K L K + QE E +N R+R ++ ++ WE+ ++++KE + +
Sbjct: 345 IKKLLKTPQQQEDFEKFLDAYNAERQRLLEFQSLDGAKRKWEQTLEDFKESNVVNVPSKS 404
Query: 210 APN---------LPHIK--------GLFLGWFGPLSEAIEREQKMQRTK-KQKAAYAPHI 251
N LP IK L + G L+ + M+R ++ YA ++
Sbjct: 405 IKNYLWKWHSKLLPLIKEEVLKCQKTLSIIGAGNLNSYKTKLSTMERKAFNERLEYANYL 464
Query: 252 ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT----K 307
L+ DK++ + + +++ ++ G ++ +A + +G A+E E R L K K
Sbjct: 465 ILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLLSKEIDVFK 524
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
N++ K + + +++ + L++ R L+ E W + +AK+GS
Sbjct: 525 NFRNMKNSKEFKRLVTTGS---KNTFTKLLQQSRSASIDTELE-ETLFNWPNEIKAKIGS 580
Query: 368 RLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
L+ LL+++A + V D P + I + G+++
Sbjct: 581 VLISLLLQSAKID--VQGKD---PITNEEVHGQVPAIFHQYQYANGNKIGILKFHHDFTS 635
Query: 428 GL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GN 484
L D + + Y+PMLV PK W +N GGY + + ++RT S +Q +K+ + N
Sbjct: 636 KLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYYTETSLIRTKDSPEQLAYVKAASENN 695
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMT 542
+ KV++ L LG+T W +N ++ +V+ +W SG + + + + P+ P D +
Sbjct: 696 TIDKVYQGLTVLGNTPWTINSEIFNVISEVWNSGNQFLDIPAIQDSPIYPPQPPSDADPS 755
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
++ WK+ VRK S RCD KL AR E Y+PHNLDFRGRAYP+ PH
Sbjct: 756 VIRDWKYQVRKVSNKFSSDRSMRCDANYKLETARGFIGER-IYFPHNLDFRGRAYPISPH 814
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ RG+L F EG+ LG+ GLRWLKIHLANL+ G++K + D R F + + I
Sbjct: 815 LNHLGNDMSRGLLLFWEGKELGERGLRWLKIHLANLY--GLDKETLDKREQFTDLNKANI 872
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
DSA P+ G WW ++E P+Q L+ CI L+EA K +P+ +SH+P+HQDG+CNGLQHY
Sbjct: 873 IDSATKPLAGKGWWKSSEKPWQTLSVCIELAEAWKLKNPNMFVSHIPVHQDGTCNGLQHY 932
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALG + A VNL+ KP DVYS +A +++++ + D + Q LA L +
Sbjct: 933 AALGGDVEGATQVNLMPDNKPNDVYSYVA----KLVQKRVDIDATNGHQ--LALKLQRHI 986
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
RK+VKQTVMTSVYGVT++GA +QI RRL+E
Sbjct: 987 KRKVVKQTVMTSVYGVTYIGASDQIDRRLKE 1017
>gi|336270782|ref|XP_003350150.1| hypothetical protein SMAC_01041 [Sordaria macrospora k-hell]
gi|380095545|emb|CCC07018.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1407
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 212/599 (35%), Positives = 334/599 (55%), Gaps = 36/599 (6%)
Query: 227 LSEAIEREQKMQRTKKQ--KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
L E E E+ ++TK+ + Y P + +++A + + + + G + +
Sbjct: 410 LEEVEESEKATRKTKEDLDRCIYGPFLRQSNPERLAAVTIISTLSSLAMGGAHKGATIAS 469
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVM 343
HI E++IR+ +K + K + ++ + LR + S +
Sbjct: 470 LITHIAKFAEEDIRV----QKAEAMLSKNTLRKSKVKQYNPRSFLRFTNTTASAGSGDMA 525
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP-VNPADYS-PPDVRPAFRHRF 401
++ + E + W + K+G+ L+ L++TA ++ +PA + +PAF H
Sbjct: 526 DSNTVDVVMEEEAWTTLIRTKVGAALLSALLDTAKIKLVREDPATKTLVTQNQPAFSHVM 585
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+ + K+ G + + V++ L R L ++PM+ P W + +G YL
Sbjct: 586 QL-------RRGKKVGTIIPNKAVVDLLVREPVPDFLARHLPMVTAPDPWVSFERGAYLE 638
Query: 461 LPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
+ V+R ++Q+ ++ M ++F+ LD LG T W++N V V+ +W SG
Sbjct: 639 TKTPVLRLKNGEREQKLYTEAAIARGDMDQIFKGLDVLGKTGWKINHPVFKVMLEVWNSG 698
Query: 519 GNIAGLVDRNDVL-IPEKPLS-EDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLS 573
+A + N V P +P S ED T + W ++ K I ER HSQRC +L
Sbjct: 699 EQVANIPPLNPVFEQPAEPASTEDPTIKRSW---LKALKAIENERSGLHSQRCFMNFQLE 755
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ F++G+PLG+SGLRWLK+
Sbjct: 756 IARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHLRGLMLFSKGKPLGESGLRWLKV 814
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL+ G +K S R F E ++ + +SA NP+NG+RWWL AEDP+QCLA C L+
Sbjct: 815 HLANLY--GFDKASLQERQEFAEENIENVRESARNPLNGNRWWLKAEDPWQCLATCFELA 872
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
EAL+ P +SHLP+HQDG+CNGLQHYAALG +T A VNLV GE+PADVYS +A
Sbjct: 873 EALELEDPTKYVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLVPGERPADVYSAVAKL 932
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + + D KD AK + ++ RK+VKQTVMT+VYGVT+VGA++Q+ ++++
Sbjct: 933 VIKGIDEDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGAKKQVLKQID 985
>gi|254566053|ref|XP_002490137.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
gi|238029933|emb|CAY67856.1| Mitochondrial RNA polymerase [Komagataella pastoris GS115]
Length = 1321
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 228/691 (32%), Positives = 363/691 (52%), Gaps = 50/691 (7%)
Query: 155 LKGLYKRIKLQEYREMKKRKFNLLRRRQVKQET-----EAWERMVDEYKELEAKMIEKRL 209
+K L K + QE E +N R+R ++ ++ WE+ ++++KE + +
Sbjct: 337 IKKLLKTPQQQEDFEKFLDAYNAERQRLLEFQSLDGAKRKWEQTLEDFKESNVVNVPSKS 396
Query: 210 APN---------LPHIK--------GLFLGWFGPLSEAIEREQKMQRTK-KQKAAYAPHI 251
N LP IK L + G L+ + M+R ++ YA ++
Sbjct: 397 IKNYLWKWHSKLLPLIKEEVLKCQKTLSIIGAGNLNSYKTKLSTMERKAFNERLEYANYL 456
Query: 252 ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT----K 307
L+ DK++ + + +++ ++ G ++ +A + +G A+E E R L K K
Sbjct: 457 ILVSPDKMSTLTILELLKIIFTGKNTTGIRTARAVISVGKAVELEYRSERLLSKEIDVFK 516
Query: 308 NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
N++ K + + +++ + L++ R L+ E W + +AK+GS
Sbjct: 517 NFRNMKNSKEFKRLVTTGS---KNTFTKLLQQSRSASIDTELE-ETLFNWPNEIKAKIGS 572
Query: 368 RLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
L+ LL+++A + V D P + I + G+++
Sbjct: 573 VLISLLLQSAKID--VQGKD---PITNEEVHGQVPAIFHQYQYANGNKIGILKFHHDFTS 627
Query: 428 GL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GN 484
L D + + Y+PMLV PK W +N GGY + + ++RT S +Q +K+ + N
Sbjct: 628 KLSKDNLSGAVQPQYLPMLVRPKPWLSHNLGGYYYTETSLIRTKDSPEQLAYVKAASENN 687
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMT 542
+ KV++ L LG+T W +N ++ +V+ +W SG + + + + P+ P D +
Sbjct: 688 TIDKVYQGLTVLGNTPWTINSEIFNVISEVWNSGNQFLDIPAIQDSPIYPPQPPSDADPS 747
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
++ WK+ VRK S RCD KL AR E Y+PHNLDFRGRAYP+ PH
Sbjct: 748 VIRDWKYQVRKVSNKFSSDRSMRCDANYKLETARGFIGER-IYFPHNLDFRGRAYPISPH 806
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ RG+L F EG+ LG+ GLRWLKIHLANL+ G++K + D R F + + I
Sbjct: 807 LNHLGNDMSRGLLLFWEGKELGERGLRWLKIHLANLY--GLDKETLDKREQFTDLNKANI 864
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
DSA P+ G WW ++E P+Q L+ CI L+EA K +P+ +SH+P+HQDG+CNGLQHY
Sbjct: 865 IDSATKPLAGKGWWKSSEKPWQTLSVCIELAEAWKLKNPNMFVSHIPVHQDGTCNGLQHY 924
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALG + A VNL+ KP DVYS +A +++++ + D + Q LA L +
Sbjct: 925 AALGGDVEGATQVNLMPDNKPNDVYSYVA----KLVQKRVDIDATNGHQ--LALKLQRHI 978
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
RK+VKQTVMTSVYGVT++GA +QI RRL+E
Sbjct: 979 KRKVVKQTVMTSVYGVTYIGASDQIDRRLKE 1009
>gi|294656558|ref|XP_002770286.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
gi|199431562|emb|CAR65641.1| DEHA2D08866p [Debaryomyces hansenii CBS767]
Length = 1312
Score = 361 bits (926), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 239/690 (34%), Positives = 362/690 (52%), Gaps = 75/690 (10%)
Query: 157 GLYKRIKLQEYREMKKRKFNLL---RRRQVKQETEAWERMVDEYKEL---EAKMIEKRLA 210
+YK +K E RE +L R+RQ++ R VD KE E + ++KR A
Sbjct: 352 AVYKCLKTDEQREKFNEALDLFNEGRQRQLEL------RGVDGAKEKWKHEFEDMQKRGA 405
Query: 211 PNL-PHIKGLFLGWFGPLSEAIEREQKM------------------QRTKKQKAAYAPHI 251
NL + W+ L +E E + K +A YAP++
Sbjct: 406 INLHKSLNVQLFKWYSDLLPYVEEEVNQCKKILDGEISLDNVKPDAKNLMKDRAYYAPYL 465
Query: 252 ELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR 311
L+P K+ VI + +++ L G ++ +A + +G A+E E + + ++
Sbjct: 466 TLIPPKKMCVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLMKAEGRSLS 525
Query: 312 KKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVE 371
KK+ + S+ K+LLR+R R Q + N E W AK+GS L
Sbjct: 526 KKL-----KTTSQWKKLLRQR--------RDYNKQDPIANNE---WDYPIYAKVGSVLTS 569
Query: 372 LLIETAYVQHPVNPADYSP----PDVRPAFRHRFKTILKHPGQKTTKRYGVVEC-DPLVL 426
LLI A V PV D + ++PAF H ++ + GQ R GV++ LV
Sbjct: 570 LLIHVAKV--PVKGTDPTTGKEVKGMQPAFHHTYQYL---QGQ----RLGVLKVHKSLVR 620
Query: 427 EGLDRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485
+ + + P +PMLVPP+ W YN GGYLF + ++R S + LK+ +
Sbjct: 621 QLAGNVLGNSVQPQMLPMLVPPRPWTSYNDGGYLFSQNSLVRIKDSAETNAYLKAASDLD 680
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMT 542
++++ L+ LG T W VN+ V +++ W +G +I +V+ + L + P++ +
Sbjct: 681 NLEIYDGLNVLGDTAWTVNRNVFNIISKFWNTGEKFLDIPPIVEEPE-LPKQLPMNAEPF 739
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
E +++ VRKA SQRCDT KL +AR E+ ++PHN+DFRGRAYP+ H
Sbjct: 740 EKAEYQRKVRKAMNEAASARSQRCDTNYKLEIARGFLGEK-LFFPHNVDFRGRAYPLSAH 798
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ R + F EGR +G GL WLKIHLAN++ G++K + R+ FV+++L I
Sbjct: 799 LNHLGNDMTRSLFLFWEGREVGDEGLNWLKIHLANVY--GIDKAPLNERIQFVDDNLENI 856
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ A NPINGS WW E P+Q L+ C L+EA + P +SH+P+HQDG+CNGLQHY
Sbjct: 857 LECARNPINGSGWWKKGEKPWQVLSVCFELNEAFQLDDPTKFVSHIPVHQDGTCNGLQHY 916
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALG + A VNL+ +KP DVY+ +A V + + D A L D++
Sbjct: 917 AALGGDIEGARQVNLIPADKPQDVYTFVAGLVQKRV------DAEAEAGNKYAIFLQDKI 970
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RK+VKQTVMT+VYGVTFVGA QI+++++
Sbjct: 971 TRKVVKQTVMTNVYGVTFVGAVLQIQKQID 1000
>gi|320593395|gb|EFX05804.1| mitochondrial DNA-directed RNA polymerase [Grosmannia clavigera
kw1407]
Length = 1496
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 229/631 (36%), Positives = 347/631 (54%), Gaps = 52/631 (8%)
Query: 203 KMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVA-V 261
K +E RLA L + LSEA + + K + Y P ++ ++A V
Sbjct: 406 KDLELRLAQELKKVD---------LSEATKNKNK---EDLDRCLYGPFLQQSATSRLAAV 453
Query: 262 IVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRK-----KIIA 316
++ + L M G D+ V + I E++I++ + ++ ++ RK
Sbjct: 454 TIVSTLSSLAMQGV-DKGVSIGNVITQIAKVAEEDIKLQAEAKQQASHGRKMSARLAAKQ 512
Query: 317 DTEEVLSKEKELLR-KRVNSLIKSKRVMEAQKLLKNEETKP-----WGRDTQAKLGSRLV 370
++ L K LLR ++ + ++K L+ + E W +AK+G+ L+
Sbjct: 513 AAKQALRKSSVLLRGTKLATAAEAKEDEPVPTLVADREPAAGKEMTWPITIKAKVGAALL 572
Query: 371 ELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVL 426
+L+ETA V +HP S +PAF R + K K+ G++ +P ++
Sbjct: 573 SMLLETAKVTAVKEHPETKTLIS--QQQPAF-SRLNQL------KRGKKVGMLIANPTLV 623
Query: 427 EGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTG 483
E + R + L ++PM+V P W + KGG+L P+ ++R SRK Q+ A ++
Sbjct: 624 ELMKREPRADFLARHLPMVVEPAPWTRFYKGGFLESPAPLVRVKDSRKDQKMYAEAAIQR 683
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKP-LSEDM 541
M +V LD LG T W+VN+ V +V+ W +G IA + D+ +P +P SED
Sbjct: 684 GDMDQVLRGLDVLGRTAWKVNRPVFAVMLEAWNTGEEIAEIPPLTPDISVPAEPDSSEDP 743
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ ++W +V+ A+ HS RC T ++ +AR +D+ FY+PHN+DFRGRAYP+ P
Sbjct: 744 MKRRQWLKAVKAAENQRSGLHSVRCFTNFQMEIARAFRDQT-FYFPHNVDFRGRAYPIPP 802
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+ NH+ +D RG+L FA+G+ LG+SGLRWL++HLAN+F G +K S R AF +L +
Sbjct: 803 YFNHMGADNVRGLLTFAKGKQLGESGLRWLQVHLANVF--GYDKASLSDRAAFAMENLDK 860
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DSA P+ G RWWL AEDP+QCLAAC L AL P + SHLP+HQDG+CNGLQH
Sbjct: 861 IRDSATAPLTGQRWWLEAEDPWQCLAACFELKAALDLEDPTTYESHLPVHQDGTCNGLQH 920
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALG ++ A VNL ++PADVYS +A V E + D + + AK L
Sbjct: 921 YAALGGDSWGARQVNLEPSDRPADVYSAVADIVKESIAEDLARGDAN------AKALTGL 974
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ RK+VKQTVMT+VYGVTF GAR+Q+ ++L+
Sbjct: 975 IKRKVVKQTVMTNVYGVTFAGARKQVLKQLD 1005
>gi|346319151|gb|EGX88753.1| mitochondrial DNA-directed RNA polymerase, putative [Cordyceps
militaris CM01]
Length = 1392
Score = 360 bits (925), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 206/493 (41%), Positives = 300/493 (60%), Gaps = 38/493 (7%)
Query: 333 VNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADY 388
V+ + +SK EA K ++ ++PW +A++G+ LV+ LI++A V+ HP +
Sbjct: 519 VSQITESK---EAAKRIEESASQPWSMQIKAQVGAFLVKALIDSAKVKAIKRHPTSGELV 575
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPP 447
S +PAF H ++ P + K+ G++ ++E L R L ++PM+V P
Sbjct: 576 S--QYQPAFTH-----IQQP--RKGKKVGMLIMHNTLVEQLKREPLGDFLAKHLPMIVEP 626
Query: 448 KKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC--MKKVFEALDTLGSTKWRVNK 505
K W+ N GG+L + V+R +Q +C MK+VF+ LD LG T W++N+
Sbjct: 627 KPWRNMNDGGFLESKTSVIRVQPGNVEQRLYAKAAVDCGDMKQVFKGLDVLGQTAWQINR 686
Query: 506 QVLSVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER- 561
VL+V+ W SG N+ L + DV P +P S + K KW +R K I ER
Sbjct: 687 GVLNVMMEAWNSGEEIANMPALEPKFDV--PAEPDSTANPALHK-KW-IRDIKAIENERS 742
Query: 562 --HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
HSQRC L+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L F +
Sbjct: 743 GLHSQRCYMNLQLEIARAFRNQT-VYFPHNVDYRGRAYPMPTYLNHMGADHARALLSFEK 801
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
G+PLG++GLRWLKIHLAN++ G++K S + R AF I +SA NP+NGSRWWL A
Sbjct: 802 GKPLGETGLRWLKIHLANVY--GLDKASFEEREAFANESASHIIESATNPLNGSRWWLKA 859
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
EDP+QCLAAC L AL+ P + +S LPI QDG+CNGLQHYAALG + A VNL
Sbjct: 860 EDPWQCLAACFELKGALELEDPTTYVSRLPIQQDGTCNGLQHYAALGGDLWGAKQVNLEP 919
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
G++PADVYS +A V E + +D+ +K+ L +L ++ RK+VKQTVMT+VYGVT
Sbjct: 920 GDRPADVYSAVADLVKEAIAKDA---AAKNKFGL---VLDGKITRKVVKQTVMTNVYGVT 973
Query: 800 FVGAREQIKRRLE 812
F GA++Q+ R+++
Sbjct: 974 FAGAKKQVCRQID 986
>gi|67901244|ref|XP_680878.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|40742605|gb|EAA61795.1| hypothetical protein AN7609.2 [Aspergillus nidulans FGSC A4]
gi|259483938|tpe|CBF79737.1| TPA: Putative DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q70TF3] [Aspergillus
nidulans FGSC A4]
Length = 1391
Score = 360 bits (925), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 221/605 (36%), Positives = 334/605 (55%), Gaps = 36/605 (5%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+++ Y P++ ++ +++A + + + + D+ +++ AV IG + +E+ +
Sbjct: 423 RERVDYGPYLRMVKPEELASLTILTTINNLTRNGLDKGIKLAPLAVAIGNDVYEEVALQR 482
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK-PWGRD 360
+E+ RKK + V ++ L ++ +K A K ++ EE W
Sbjct: 483 MVER-----RKKEMNSAHRVKLIKQIFLGRKDRDKLKGINWKNALKSMEQEEPDIVWATA 537
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPGQKTT 413
+AK+G+ L+ LL + A V PVN A + R P F+H ++
Sbjct: 538 IKAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQPVFQHSYQITW-------G 590
Query: 414 KRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS-YVMRTHGS 471
+R G + +P +++ L R A+ +L +PML P+ WKGY G Y + + +V T G
Sbjct: 591 RRTGYIHVNPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYFYHQNLFVRSTPGE 650
Query: 472 RKQQEALKSVTGN-CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
Q +K+ N +K + + LD LG T W +N+ V +V+ W +G IA L +
Sbjct: 651 SLQPTYVKAALENDGLKMIRKGLDILGGTGWVINRDVFNVMLEAWNTGEPIADLAPLDPD 710
Query: 531 LIPE-KPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L KP E+ E +K W VR + HSQRC ++ VAR +E FY PH
Sbjct: 711 LPIPPKPSPEEGYEAEKEWHTKVRDIENQRGGYHSQRCFQNFQMEVARSYLNET-FYLPH 769
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGRAYP+ P+LN +++D RG+L F+E +PLG+SGLRWLKI +ANL G +K S
Sbjct: 770 NMDFRGRAYPIPPYLNQMAADNARGLLLFSEAKPLGESGLRWLKIQIANL--AGFDKASL 827
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R F +HL ++ DSA N ++G RWWL AEDP+QCLAAC L AL+ +P S L
Sbjct: 828 SEREQFAMDHLDDVLDSANNGLHGRRWWLQAEDPWQCLAACCELRNALQHPNPTEYASRL 887
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPS 767
PIHQDGSCNGLQHYAALG + L A VNL ++P+DVYS +A V E + ++ + DP
Sbjct: 888 PIHQDGSCNGLQHYAALGGDKLGAQQVNLEPSDRPSDVYSAVAQYVKEAVATEAAQGDP- 946
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAA 827
+AK+L ++ RK+VKQTVMT+VYGVTF+GA +QI+++L D + A
Sbjct: 947 ------IAKMLEGKITRKVVKQTVMTNVYGVTFIGAMKQIRKQLANHYPELSDHEKKTGA 1000
Query: 828 CYAAK 832
Y A+
Sbjct: 1001 IYIAR 1005
>gi|346973344|gb|EGY16796.1| DNA-directed RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1409
Score = 360 bits (924), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 220/588 (37%), Positives = 339/588 (57%), Gaps = 48/588 (8%)
Query: 244 KAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR---- 298
+ Y P + L P+ AV ++ + + G D+ + + A + E++IR
Sbjct: 431 RCTYGPFLRLSTPSRLAAVTILGTLSSTAILG-VDKGMPLSAALSSLAKLAEEDIRAQLT 489
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK--- 355
+ + KT KR++++ +V SK +L R + E + L K+ E +
Sbjct: 490 VQNSKTKTNKSKRRRVV----QVASKSSKLDAVRAELGAEG----EVKPLAKDTEPRADT 541
Query: 356 PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
PW +AK+ + L+ LI+TA + +HP S +PAF H + +
Sbjct: 542 PWPVAVKAKVAAALLSALIDTAKIKVVKEHPETKTLIS--QYQPAFSHATQL-------R 592
Query: 412 TTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-H 469
K+ G+V + ++ + R + L ++PM+V P+ W ++KGG+L S ++R H
Sbjct: 593 RGKKIGMVLLNKELVNIMKREPQGDFLAKHLPMVVKPEPWSKFDKGGFLESTSNLVRVKH 652
Query: 470 GSRKQQ---EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
G + Q+ EA ++ M ++F+ LD LG T WR+N +L V+ + W SG +A +
Sbjct: 653 GDKDQRIYTEA--AIARGDMDQIFKGLDVLGQTAWRINAPILEVMLAAWNSGTALANIPA 710
Query: 527 RN-DVLIPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
N DV +P +P SED TE + W +V+ A+ HS RC +L +AR +++ F
Sbjct: 711 LNPDVHVPTEPAASEDPTERRLWLRAVKAAENERGGLHSVRCFMNFQLEIARAFRNQT-F 769
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+G+ LG+ GL+WLK+HLAN++ G +
Sbjct: 770 YFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFADGKELGEKGLKWLKVHLANVY--GFD 827
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
K S R +F ++L IFDSA P+ G+RWWL AEDP+QCLAAC L AL+S P
Sbjct: 828 KASLRDRESFAMDNLVNIFDSASKPMEGNRWWLKAEDPWQCLAACFELKAALESPEPTKF 887
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
+SHLP+HQDG+CNGLQHYAALG +T A VNL G+KPADVYS +A V + + +D
Sbjct: 888 VSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDKPADVYSAVANIVKDYIAKDLE- 946
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ +P A+ ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 947 --TNNPFAIAVN---GKITRKVVKQTVMTNVYGVTFQGAKKQVLKQLD 989
>gi|449295533|gb|EMC91554.1| hypothetical protein BAUCODRAFT_38669 [Baudoinia compniacensis UAMH
10762]
Length = 1478
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 234/690 (33%), Positives = 356/690 (51%), Gaps = 67/690 (9%)
Query: 151 SSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELE-AKMIEKRL 209
S I L L L+ RE + L+ V + W DE +++ + ++ R
Sbjct: 362 SFISLPPLPADAPLEAQRERAYERQRLMEETSVDIAIQRWREADDELRKIGISTQLQSR- 420
Query: 210 APNLPHIKGLFLGWFGPLSEAIERE---------QKMQRTKKQKAAYAPHIELLPADKVA 260
+ L W+ L A++ E Q ++ ++ YAP++ELLP DKVA
Sbjct: 421 -----PLGALMWQWYQALLPALKEELAECRKVMAQPDGAKEEDRSFYAPYLELLPMDKVA 475
Query: 261 VIVMHKMMGLVMAGHEDRC-------VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKK 313
+ ++ AG +DR +++ +G +E E +E+ K ++
Sbjct: 476 ANTILFVVSR-FAGGKDRHTKKYEVEMKLSHLTTSLGKQLEAEADASRSVEQMKERRQGG 534
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELL 373
I + ++R K + + E W D + KL + L++ L
Sbjct: 535 KIKAS-----------KRRQGMFAKGLKHKKGANSTLVESDDKWPLDAKVKLCAMLIQKL 583
Query: 374 IETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
E+A + +HP + ++PAF HR K +L K+ G+V +P +++ L
Sbjct: 584 KESAQLPVTREHPRTKQKIT--QLQPAFLHRIKYVL-------GKKVGIVAPNPALIDKL 634
Query: 430 DRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQQEALKSV-TGNCM 486
+ +I +PM+V PK W G++ GGY+ + V+R G + ++ + M
Sbjct: 635 ESEPMGSVIAKRMPMIVEPKPWTGWSVGGYIHYANDVLRLGPGDKSGRDYFHAAHNKGDM 694
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQ 545
+++ L LG W+V+ V V W SG IA + + +P +P + DM E +
Sbjct: 695 TQLYAGLTALGKVPWKVHPDVFRVQIEAWNSGEEIANFAPLHPQIDVPPEPPAGDMAERR 754
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
W +V + HS+RC ++ VAR M +E Y+PHN+DFRGRAYP+ P+LNH
Sbjct: 755 NWLKAVDDVENKRSGAHSKRCFQNFQMEVARAMLNET-IYFPHNMDFRGRAYPIPPYLNH 813
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+ +D RGVL FAEG+PLG GLRWLKIHLA + G +K S RL + E+HL +I+DS
Sbjct: 814 MGADNVRGVLVFAEGKPLGDKGLRWLKIHLATV--AGYDKASMSERLQYTEDHLDDIYDS 871
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
NP+NG RWWL AED +Q LAAC L++AL S P +S LPI QDG+CNGLQHYAAL
Sbjct: 872 VRNPLNGRRWWLKAEDSWQTLAACFELTKALDSPDPTKFLSTLPIQQDGTCNGLQHYAAL 931
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS---NKDPSKHPQALLAKILIDQV 782
G + + A VNL G++PADVY+ +A V + + RD+ NK +A+ L ++
Sbjct: 932 GGDEIGARQVNLEPGDRPADVYTAVAEEVKKAVARDAAAGNK---------IAQKLDGRL 982
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
RK VKQ VMT+VYGVTF GA+ Q++R+LE
Sbjct: 983 TRKCVKQPVMTNVYGVTFYGAKAQVQRQLE 1012
>gi|358396537|gb|EHK45918.1| hypothetical protein TRIATDRAFT_292168 [Trichoderma atroviride IMI
206040]
Length = 1435
Score = 358 bits (920), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 228/662 (34%), Positives = 358/662 (54%), Gaps = 57/662 (8%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIEREQ 235
L R + E W + K L+ + + LAP+ + W + I +E
Sbjct: 404 LERDSISSAIEKWRL---DNKTLQKRGVSTALAPSTKEGSMSQNMASWMSAMETRIAQEL 460
Query: 236 KM---QRTKKQKA-------AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
++ KK K+ Y P I+ ++A + + ++ + ++ + +
Sbjct: 461 RLIEQSEAKKSKSDWDLTRCIYGPFIQQGDPARLAAVTILSVINIGTVLGVEKGTPISRL 520
Query: 286 AVHIGMAIEQEIRIHS--FLEKTKNYKRK-KIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
HI A++++ ++ E+ +RK K + D SK+K + + + +
Sbjct: 521 ITHIAKAVQEDTEMYQKELAERKARRQRKLKFVGDK----SKDKAEASEDIKTPLLD--T 574
Query: 343 MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV---RPAFRH 399
E ++ L+ PW +A++GS L+++LIE+A + + V + S + +PAF H
Sbjct: 575 AEQERTLEENSKNPWTLQIKAQVGSILLQMLIESAKI-NVVAESSTSKELISQYQPAFSH 633
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGY 458
+T+L+ K+ G + + ++E L R + ++PM+V PK W + +GG+
Sbjct: 634 --QTLLRK-----GKKVGALFFNNHLIEQLKREPVGDFIAKHLPMVVEPKPWSSFTEGGF 686
Query: 459 LFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
L + +R +Q+ + ++ M++VF+ LD LG T W +NK L+V+ W
Sbjct: 687 LDCKTSFVRVKPGDIEQKLYSTAAIKRGDMEQVFKGLDVLGKTAWVINKDTLNVMMEAWN 746
Query: 517 SG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTEL 570
SG NI L + DV PE S D + W +R K I ER HSQRC L
Sbjct: 747 SGEEIANIPPLHPKFDV-PPEPDSSADPLARKSW---IRAVKAIENERSGLHSQRCFMNL 802
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
+L +AR +++ Y+PHN+D+RGRAYPM +LNH+ +D R +L+FA+G+ LG GLRW
Sbjct: 803 QLEIARAFRNQT-IYFPHNVDYRGRAYPMPTYLNHMGADHARSILKFAKGKELGVRGLRW 861
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHLAN++ G++K S D R AF +++ I DSA NP+ GSRWWL EDP+QCL+AC
Sbjct: 862 LKIHLANVY--GLDKASFDEREAFANDNVANIIDSATNPLKGSRWWLKGEDPWQCLSACF 919
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L AL+ P +S+LP+HQDG+CNGLQHYAALG +T A VNL GE+PADVYS +
Sbjct: 920 ELKAALELPDPTKFVSNLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGERPADVYSAV 979
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A V E + +D + AK L ++ RK+VKQTVMT+VYGVTF GA++QI ++
Sbjct: 980 ANLVKEAIAKDLEAGNA------FAKALDGKITRKVVKQTVMTNVYGVTFSGAKKQICKQ 1033
Query: 811 LE 812
++
Sbjct: 1034 ID 1035
>gi|240274975|gb|EER38490.1| mitochondrial DNA-directed RNA polymerase [Ajellomyces capsulatus
H143]
Length = 1265
Score = 358 bits (920), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/459 (42%), Positives = 273/459 (59%), Gaps = 18/459 (3%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W QAK+G+ L +L+ TA V PV D + + F+ + + + R
Sbjct: 433 WSPVVQAKIGACLASMLLSTATV--PVPTKDPKTNQQKQTDQAAFRRVYQ---LERGFRV 487
Query: 417 GVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQ 474
G V + ++E L R +L ++PM+ PP+ W GG+L PS VMR G Q
Sbjct: 488 GYVHANDYIVEKLRREPLGELLAKHLPMVCPPRPWTSARGGGFLEYPSTVMRVKQGDISQ 547
Query: 475 QEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
+++ + VF L LG T W++N+ VL+V+ W SG IA L N +++
Sbjct: 548 LSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLNVMLEAWNSGEEIANLAPENPNIIE 607
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
PEKP ++D ++ + + A HSQRC +L +AR ++E FY PHNLDF
Sbjct: 608 PEKPDTDDRDILKDYYRARMHATNARTGYHSQRCFQNFQLEIARAYRNET-FYLPHNLDF 666
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F G +K S R
Sbjct: 667 RGRAYPMPPYFNQMGADHCRGLLLFSKGRELGASGLRWLKIHLANVF--GFDKASFQERE 724
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
F +HL +I DSA N + G RWWL A DPFQCLAACI L+ A+ P +SHLP+HQ
Sbjct: 725 QFAMDHLEDIRDSAINGLKGKRWWLDAGDPFQCLAACIELTNAMALEDPTKYVSHLPVHQ 784
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V + +++D+ K
Sbjct: 785 DGSCNGLQHYAALGGDVIGAQQVNLEPSDRPSDIYTGVAEHVKQSIQKDAAKGNET---- 840
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
AK+L D++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 841 --AKLLEDKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 877
>gi|89148154|gb|ABD62820.1| mitochondrial single-subunit RNA polymerase [Stygamoeba sp.
ruffled]
Length = 661
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 193/436 (44%), Positives = 267/436 (61%), Gaps = 21/436 (4%)
Query: 405 LKHPGQKTTKR-YGVVECDPLVLEG-----LDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
KH TTKR G + C P VL+ L + A H + +PM+VPPK W + GGY
Sbjct: 56 FKHTYTYTTKRKVGAITCAPSVLQTIRDGHLAQEANHARM--LPMVVPPKPWTAPDVGGY 113
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
L + S VMR SR Q + L S TG + V+ +LD L + W++NK+VL V + +W G
Sbjct: 114 LVVKSNVMRVRDSRLQWDML-SKTGTDLSNVYRSLDELSAVPWKINKRVLRVAQELWQRG 172
Query: 519 GNIAGLVDRNDVLIPEKPLS-EDMTEVQKWKW--SVRKAKKINQERHSQRCDTELKLSVA 575
G I L R D+ +PE P + +DM ++ + +R+ ++ N + HS RCDT LKL VA
Sbjct: 173 GGIGDLPSRTDLPLPEAPDNYKDMDPAERSAYYRHLRRQQRANADLHSLRCDTTLKLGVA 232
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ ++ + FY+PHN+DFRGR YP+ PHLNHL SD+CRG+L F+EGR LG +GL WLK+ L
Sbjct: 233 EQFQNLDRFYFPHNMDFRGRTYPIPPHLNHLGSDLCRGLLCFSEGRELGPNGLGWLKVQL 292
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANLF G K S R F + ++ + +A +P + WW A+DP+Q L+ C L++A
Sbjct: 293 ANLF--GNNKCSFADRQRFADENMARVLATAADPATET-WWHAADDPWQALSTCYELTDA 349
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L S P +S+LPIH DGSCNGLQHYAALG + A VNL+ +P DVYS +A V
Sbjct: 350 LASPDPARHVSYLPIHMDGSCNGLQHYAALGGDEEGARKVNLLPAPQPDDVYSGVATIVS 409
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+++ D+ K S +A +L D++ R++VKQTVMTSVYGVT+VGAR QI+ L
Sbjct: 410 RLVEEDAQKGHS------IALLLRDRISRRIVKQTVMTSVYGVTYVGARAQIQNALSSTD 463
Query: 816 HITDDRQLFAAACYAA 831
+ DD A+ AA
Sbjct: 464 LLDDDAAWQASRYLAA 479
>gi|147820783|emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
Length = 1312
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 165/238 (69%), Positives = 202/238 (84%), Gaps = 1/238 (0%)
Query: 292 AIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351
+ +++RIHSFLEKTKN++R K + ++E L +EKE+LRKRV S I+ K+++E QKL+KN
Sbjct: 585 TVNEKVRIHSFLEKTKNFERHKTVGHSQEGL-REKEILRKRVKSFIRKKKIIEVQKLVKN 643
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
EE PWGRDTQAKLGSRL+ELL ETAYVQ PV + PPDVRPAFRH FKT+ K GQK
Sbjct: 644 EEITPWGRDTQAKLGSRLIELLTETAYVQTPVXQSADCPPDVRPAFRHTFKTVTKESGQK 703
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
++YGV+ECDPLVL GLDR+AKHM+IPYVPML+PPKKWKGY+KGGYLFLPSYVMRTHGS
Sbjct: 704 DWRKYGVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGS 763
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
RKQQ+A+KSV ++KVFEALDTLG+TKWR+N++VLSV+ESIW GGN+ GLVDR +
Sbjct: 764 RKQQDAVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDREN 821
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 143/180 (79%), Gaps = 10/180 (5%)
Query: 126 ENSTNHQLMCLEPRRRIFVQDPPWFSSIFLKGLYKR-------IKLQEYREMKKRKFNLL 178
++S+N Q+ E RIFVQDPPW SS +R +KL E+RE ++R + LL
Sbjct: 90 QDSSNIQVK--ESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKL-EFRETERRNYGLL 146
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ 238
RRRQVK ETEAWERMV+EY+E+E +M EK+LAPNLP++K LFLGWF PL EAIE+EQ+ Q
Sbjct: 147 RRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIEKEQRAQ 206
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
RTKKQKAAYAPHIELLPADK+AVIVMHKMMGLVM GHE+ CV+VVQAAV IGMAIEQE +
Sbjct: 207 RTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHEEGCVRVVQAAVQIGMAIEQEAK 266
>gi|301106056|ref|XP_002902111.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans
T30-4]
gi|262098731|gb|EEY56783.1| DNA-dependent RNA polymerase, putative [Phytophthora infestans
T30-4]
Length = 1070
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 252/778 (32%), Positives = 376/778 (48%), Gaps = 164/778 (21%)
Query: 176 NLLRR--RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
N+ RR RQ++ E +E +D+Y K+ + + + K L W + IE
Sbjct: 158 NMRRRYARQLRLECSVYEMAMDKYSASHDKVRQLGRSTSTNAAKDLITKWMPQAQKYIES 217
Query: 234 EQKMQRTKKQKA---AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIG 290
EQK ++ Y P + LL D +A I M+ M+ + + E + + ++ A+ +G
Sbjct: 218 EQKKIKSGTHSTDSNIYGPALMLLRHDILAAIGMNIMLNMCLM--ESKGPKFIKLALAMG 275
Query: 291 MAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
A++ EE++SK KE + KR K ++ K +K
Sbjct: 276 KAVQ------------------------EEIISK-KETISKRYQD--DDKFYLQVSKNIK 308
Query: 351 NEETK-----------PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV------ 393
E K W + Q K+G+ +V+ + T YV P + S P++
Sbjct: 309 LESLKMRMKEYVDSVGGWDKRLQLKVGAAVVDCIQRTCYV--PNEYGEVSTPELCAAKGL 366
Query: 394 ---RPAFRHRFKTILKHPGQKTTKRYGVVE-----CDPLVLEGLDRSAKHMLIPYVPMLV 445
PAF H + +R GV++ D ++ D + Y+PMLV
Sbjct: 367 PPPEPAFIHNYVF-------DRNRRAGVIQIHQRMADTVLATNPDANVLPWTARYLPMLV 419
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNK 505
PP+ W GGYL L + +MR S Q + ++ M + +AL+ + W +NK
Sbjct: 420 PPRPWTSVINGGYLKLRTKIMRQRDSAWQMDCVQR---GEMDGILKALNLMAEVPWVINK 476
Query: 506 QVLSVLESIWVSGGNIAGLVDRNDVLIPE------------------------------- 534
+VL V+ IW GGN L R DV +P+
Sbjct: 477 EVLDVVLQIWEDGGNFGDLPTRTDVPLPDPDSPEFADDPALYHKNVRKNQAHMMTISTSC 536
Query: 535 -----KPLSEDMTEVQKW------------KWSVRKAKKINQERHSQRCDTELKLSVARR 577
+S EV W +WS+ +++N+E HS RCDT KL VA
Sbjct: 537 GFKLIATVSGHCLEVVGWIFLSLEPSERLLRWSL--IEQLNREFHSLRCDTLYKLQVAEE 594
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
KDE YYP+N+DFRGR YP+ P+LNHL SD+ R +L F + +PLG+ GLRW+KIHLAN
Sbjct: 595 FKDEPELYYPYNMDFRGRVYPIPPNLNHLGSDLSRSLLIFRDRKPLGERGLRWMKIHLAN 654
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI--NGSRWWLTAEDPFQCLAACINLSEA 695
+F GV+K S D R+ F + HL ++ SA +P+ WW A+ PF L C L A
Sbjct: 655 VF--GVDKCSFDERVEFADAHLDKVVASASDPLGEGDCAWWKGADYPFLALGVCFELKRA 712
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
++S P +S++PIHQDGSCNGLQHYAALGR+ A VNLV ++P+DVY +A +V
Sbjct: 713 IESPDPTQYMSNIPIHQDGSCNGLQHYAALGRDHSGGAQVNLVPADRPSDVYMGVATQVM 772
Query: 756 EIMKRDSNKD-PS-KHPQALLAKI-----------------LIDQ-------------VD 783
++RD+ + P+ + +A+LA + L+DQ +
Sbjct: 773 AKVERDAALEVPTVEEVRAMLAAVPDDESTESLSRRTKFRTLLDQAHRKKYAQFLDGIIT 832
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEE----KGHITDDR---QLFAAACYAAKVS 834
RK+VKQTVMTSVYGVT++GAR+QI RL E KGHI DD+ ++ A+CY A+++
Sbjct: 833 RKVVKQTVMTSVYGVTYIGARKQISARLHETFLTKGHIMDDKLEDNIYHASCYCAELT 890
>gi|328769272|gb|EGF79316.1| hypothetical protein BATDEDRAFT_35464 [Batrachochytrium dendrobatidis
JAM81]
Length = 1404
Score = 357 bits (916), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 197/492 (40%), Positives = 291/492 (59%), Gaps = 34/492 (6%)
Query: 357 WGRDTQAKLGSRLVELLIETA----YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
WG + + K+G+ L+ LL++ V P P DV PAF H+ +L G
Sbjct: 598 WGEEAKVKIGTFLLHLLVQAGKIAVQVPDPNKPGHKMSMDV-PAFEHK---VLSSYG--- 650
Query: 413 TKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
K YG + V+E ++ +L ++PMLV P+ W N+GGYL S ++R +
Sbjct: 651 -KTYGYIIRHAAVMEMMENGCASVLPLHLPMLVQPRPWLSCNRGGYLQHGSQLVRILNNP 709
Query: 473 KQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ +E LK+ N + V A+D LGST W +N + V + W + + ++
Sbjct: 710 EHREYLKAADEANHLPLVLRAVDKLGSTAWVINPIIYKVASTFWNKKESAPSI--PKPIV 767
Query: 532 IPE--KPLSEDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYP 587
IPE KP D +WK+ + K++ Q HSQRCD K+ +AR+ E ++P
Sbjct: 768 IPEIPKPSDYDTNPDARWKYIKKNTKRLQQISNNHSQRCDLNYKMEIARKYLGET-IFFP 826
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HNLDFRGRAYPM P+LNH+ +D+CRG+L+F +PLG++G+RWLKI ++NL G +K S
Sbjct: 827 HNLDFRGRAYPMPPNLNHIGNDLCRGLLKFKVAKPLGENGMRWLKIQVSNL--AGNDKAS 884
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
D R F E+H +I DSAE+P++G RWWL +E+P+Q LA CI L++A K +P +S
Sbjct: 885 LDNRAKFAEDHRKDIIDSAEHPLDGKRWWLKSENPWQLLATCIELNQAWKCDNPLEFMSS 944
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+ IHQDGSCNGLQHYAALG + A VNL E P DVYS ++ +V +++K+ + ++
Sbjct: 945 IHIHQDGSCNGLQHYAALGGDVDGAKVVNLTRSEVPQDVYSSVSNQVMKLVKQQAEQNV- 1003
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL------EEKGHITDDR 821
P+ALL L+++++RKLVKQTVMT+ YG+TF GA +Q++ RL E D
Sbjct: 1004 --PEALL---LLNRINRKLVKQTVMTNTYGITFSGAHDQVRNRLLEARVKESGDKALTDE 1058
Query: 822 QLFAAACYAAKV 833
QL A A +A ++
Sbjct: 1059 QLHACALFATRL 1070
>gi|402220117|gb|EJU00189.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 988
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 223/641 (34%), Positives = 351/641 (54%), Gaps = 57/641 (8%)
Query: 216 IKGLFLGWFGPLSE-------AIEREQKMQRTKK--QKAAYAPHIELLPADKVAVIVMHK 266
+K W+ L E +E E+K+ + +K A P + LL +K+A + + +
Sbjct: 60 LKKWMWNWYQALKERLDNEIPTLEEEEKLAQRRKPTDGDAIGPFLRLLSTEKMATMTISE 119
Query: 267 MMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEK 326
L+ G D V+ + A+ +G +EQE L + ++ ++ +E L++
Sbjct: 120 ---LLRYGTSDGGVRTARTAITLGRVVEQEYNAEVALAQ-RSRGPDPVVLTSEGSLTELA 175
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH----P 382
+ ++ +S + + W + + ++G L+ +I+ A + P
Sbjct: 176 AIRQQARDSEDFTMAI-----------PPDWTQVIRGRVGGFLLNAVIDVATITRRGIRP 224
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-Y 440
+ S + +PAF H ++ + ++ G+++ +P + E L K L P
Sbjct: 225 STGEEVS--EEQPAFAHCYEFL-------HGRKIGLIKFNPELTEQLSSEPIKDALHPRQ 275
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGST 499
+PML+PP+ W +G Y++ + VMR S +Q L+S + ++ ++ ALD LGST
Sbjct: 276 LPMLIPPRPWIDVERGAYMYSRTSVMRYKDSLEQSSFLRSASSAGHLESMYAALDVLGST 335
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ-KWKWSVRKAKKIN 558
W +N+ + V+ ++W SG A + L E P+ D E K K +A +
Sbjct: 336 PWTINRPIFDVVIAVWNSGKQFAKIPPAG--LEGEDPVKPDNYETDPKAKRDFVRAMSTS 393
Query: 559 ----QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E HS RCDT KL +AR E FY+PHN+DFRGRAYP+ P+LNH+ D+CRG+
Sbjct: 394 IQKRHENHSMRCDTNYKLEIARAFLGER-FYFPHNVDFRGRAYPVPPNLNHMGDDLCRGL 452
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L FA+ + LG+ GLRWLKIH AN F G +K S + R+ + HL EI+DSA+ P++G R
Sbjct: 453 LTFADKKALGERGLRWLKIHAANKF--GYDKASFEERVTWTMEHLDEIYDSAKKPLDGQR 510
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WWL A+DP+Q LA+CI L AL+S +P S LP+HQDG+CNGLQHYAALG + A
Sbjct: 511 WWLKADDPWQFLASCIELHNALESPNPAEFESSLPVHQDGTCNGLQHYAALGGDGQGARQ 570
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL G++PADVY+ +A V + + + K K AK L ++ RK+VKQTVMT+
Sbjct: 571 VNLDVGDRPADVYTFVANMVEKRLDEAAAKGDEK------AKWLQGRIARKVVKQTVMTT 624
Query: 795 VYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKVS 834
VYGVTFVGAR+QI++++E G +++ +A A Y A+++
Sbjct: 625 VYGVTFVGARDQIRKQIEALPGVSISEQESYAMAVYVARLT 665
>gi|66827985|ref|XP_647347.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
gi|13991700|gb|AAK51466.1|AF361480_1 DNA-dependent RNA polymerase RpmA [Dictyostelium discoideum]
gi|15004256|gb|AAK73754.1| T3/T7 bacteriophage-like mitochondrial RNA polymerase
[Dictyostelium discoideum]
gi|60475225|gb|EAL73160.1| DNA-dependent RNA polymerase [Dictyostelium discoideum AX4]
Length = 950
Score = 355 bits (912), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 236/667 (35%), Positives = 358/667 (53%), Gaps = 60/667 (8%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR+ Q E EA + V Y++L K + I+ + + W L+E + QK
Sbjct: 150 LRKIQTLLEFEAIDDAVTRYRDLMLDSKGKSFVTSFKSIRDVLMQWNEGLTEKV---QKD 206
Query: 238 QRTKKQKAAYAPHIELLPADKVAVIVMHKMMG-LVMAGHEDRCVQVVQAAVHIGMAIEQE 296
TK Q AA+ ++ + K + ++ ++G V+ D ++ + + + E +
Sbjct: 207 LATKDQDAAWVTILKTVSVQKCILKSLNIIVGKSVLKDRYDFATNIIIETIGVSVYAEYK 266
Query: 297 IRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP 356
I E K K+I ++ L K L ++ ++ P
Sbjct: 267 SLIVKKKEPKTYKKISKLIPNS--ALKKFYNLSTDNLDVIV----------------LPP 308
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH--PGQKTTK 414
+D + +G LV + + +Q + D S PAF TI H G +TTK
Sbjct: 309 ESKDIFS-IGEFLVSQVFKHCTIQESLG-EDGSKQ--SPAF-----TIQSHYANGVRTTK 359
Query: 415 RYGVVECDPLVLEG--LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
L+ G + + L P M++ P W +G YL +MRT+GS
Sbjct: 360 VIPHKNIFKLIEAGHEIRETGGARLFP---MVIKPLPWITPTEGPYLHYKVPIMRTNGSA 416
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
Q L+++ + M ++ AL+ LG T W +N+ + +V+ W +GGNI + R D
Sbjct: 417 MQ---LRTLVDSDMSLIYRALNILGETPWVINRDLYNVILEAWANGGNIGDIPKRTDFEY 473
Query: 533 PEKPLSEDMT---EVQKWKWSV-RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
PE +S+DM E +K + ++ K +N HS RCDT KL VAR+ D Y+PH
Sbjct: 474 PE--ISDDMLFDHEARKELYKKEQRIKSLNFNLHSLRCDTNYKLEVARKFLDHT-LYFPH 530
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGR+YP+ PHLNHL SD CR +L+F + PLG+ GL WLKIH+ANL+ GV+K+
Sbjct: 531 NIDFRGRSYPIPPHLNHLGSDFCRSLLKFEKSLPLGEKGLEWLKIHVANLY--GVDKIPL 588
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ RLAF E ++ IFDS ++P+NG++WWL A++P+Q LAAC+ L++A++S P +S+L
Sbjct: 589 NERLAFTERNMENIFDSVDSPLNGNKWWLKADNPWQTLAACMELTKAIRSGKPAEFLSNL 648
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPS 767
PIHQDG+CNGLQHYAALG + A VNL+ + P DVYS +A V +I++ D+ N D
Sbjct: 649 PIHQDGTCNGLQHYAALGGDVWGAEKVNLLPSDCPQDVYSSVAQLVEQIVEEDAKNGDE- 707
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK--GHITDDRQLFA 825
+A+ + +VDRKLVKQTVMTSVYGVT++GAREQI+ + EK D+ +F
Sbjct: 708 ------IAQFFLGKVDRKLVKQTVMTSVYGVTYIGAREQIENAILEKFSDLDLDEDFIFK 761
Query: 826 AACYAAK 832
++ Y K
Sbjct: 762 SSTYITK 768
>gi|429243230|ref|NP_594459.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe
972h-]
gi|384872627|sp|O13993.2|RPOM_SCHPO RecName: Full=DNA-directed RNA polymerase, mitochondrial; Flags:
Precursor
gi|347834189|emb|CAB16197.2| mitochondrial RNA polymerase Rpo41 [Schizosaccharomyces pombe]
Length = 1154
Score = 355 bits (912), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 219/620 (35%), Positives = 333/620 (53%), Gaps = 49/620 (7%)
Query: 215 HIKGLFLGWFGPLSEAIEREQKM---------QRTKKQKAAYAPHIELLPADKVAVIVMH 265
++ LF W+ L + + E + K + Y P ++LL + K+A + +
Sbjct: 322 NVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIM 381
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL--EKTKNYKRKKIIADTEEVLS 323
++ L DR +V +G + E+E EK K+YK KK
Sbjct: 382 EVAQLSTNPRYDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKK---------- 431
Query: 324 KEKELLR--KRVNSLIKSKRVMEAQ-KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ 380
+ KEL ++ +K+ R+ + ++ N W K+GS + LL+ A ++
Sbjct: 432 RLKELFNDPRKFRQAVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIE 491
Query: 381 HPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM 436
V D S + AF H ++ G+K VE L+ +++ H+
Sbjct: 492 --VTAKDLSTGGILKQEVAAFVHTYQY---SNGRKVGMIVPHVEFYKLLSRDIEKP--HL 544
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
+PMLV PK W + GGY + ++R G+ +Q + L + N + ++F+A+ +
Sbjct: 545 HPQLLPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSS 604
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKA 554
LG WR+N+++ +VL IW SG + R +P P + K W R+
Sbjct: 605 LGKVSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMPPYP-KNSINPRDKVIWHTRRK 663
Query: 555 K--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+ + HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ HL+H+S+DVCR
Sbjct: 664 ELAALKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCR 722
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
G+LEF+ G+PLG GL WLK+HLANLF G+ K R AFV++++ E+FDSA+ P++G
Sbjct: 723 GLLEFSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDG 780
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
++WW A+DPFQ LAAC ++EA++S S ISH+PI QDG+CNGLQHYAALG + A
Sbjct: 781 NKWWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGA 840
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNL + P+DVY +A V +K+D+ +A L D+V R +VK TVM
Sbjct: 841 KQVNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDE------MANFLKDKVTRSVVKPTVM 894
Query: 793 TSVYGVTFVGAREQIKRRLE 812
T+VYGVT+VGAR+QI +LE
Sbjct: 895 TNVYGVTYVGARKQISEKLE 914
>gi|116195484|ref|XP_001223554.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
gi|88180253|gb|EAQ87721.1| hypothetical protein CHGG_04340 [Chaetomium globosum CBS 148.51]
Length = 1414
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 189/465 (40%), Positives = 284/465 (61%), Gaps = 27/465 (5%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
W +AK+G+ L+ L++TA + +HP S +PAF H + K
Sbjct: 573 WPMLIKAKVGAVLLAALMDTAKIVVQREHPETKEKLS--QTQPAFTHAVQL-------KK 623
Query: 413 TKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
++ GV++ + ++E + R + L ++PM+V P W ++KGG++ P+ ++R
Sbjct: 624 GRKIGVIQPNRELIELMKREPRGEALARHLPMVVEPVPWSKFDKGGFISAPTPLIRLKNH 683
Query: 472 RKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN- 528
K Q A ++ M+++ LD LG T W++N+ V V+ W +G A L +
Sbjct: 684 EKDQRIYAEAAIERGDMEQMMRGLDVLGKTAWKINRPVFDVMLEAWNTGEEFANLPALDP 743
Query: 529 DVLIPEKPLS-EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
+ IP +P S +D + + W SV+ A+ HS RC +L +AR +D+ FY+P
Sbjct: 744 KIPIPAEPDSTDDPMKKRVWLRSVKAAENEKSGLHSVRCFMNFQLEIARAFRDQT-FYFP 802
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYPM +LNH+ +D RG+L FA+G+PLG+ GL WLK+ L+N++ G +K S
Sbjct: 803 HNIDFRGRAYPMPTYLNHMGADHMRGLLLFAKGKPLGEKGLAWLKVQLSNVY--GFDKAS 860
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R F N+L IFDSA+NP+ G RWWL AEDP+QCL AC L AL S P + +SH
Sbjct: 861 LQEREDFATNNLENIFDSADNPLTGKRWWLQAEDPWQCLGACFELKAALSSPDPAAYVSH 920
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+HQDG+CNGLQHYAALG +T A VNL+ GE+PADVY+ +A V E +K++ +
Sbjct: 921 LPVHQDGTCNGLQHYAALGGDTWGAQQVNLLPGERPADVYAAVAQLVQEEVKQELAEGNE 980
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
AK + +++RK+VKQTVMT+VYGVTFVGA++Q++++L+
Sbjct: 981 ------FAKAVDGKINRKVVKQTVMTNVYGVTFVGAKKQVQKQLD 1019
>gi|328851510|gb|EGG00664.1| hypothetical protein MELLADRAFT_50335 [Melampsora larici-populina
98AG31]
Length = 854
Score = 354 bits (909), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/500 (40%), Positives = 293/500 (58%), Gaps = 36/500 (7%)
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
E W + +AK+G+ L++ L++TA + + V P + +PAF ++T G
Sbjct: 123 EHTDWTINQRAKVGAMLMKGLLQTAKITRSQVMPDGSIYKEEQPAF---YQTTQYFDG-- 177
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH 469
KR GV + + V E LDR ++ + Y+PM+ PP W G YL + MRT
Sbjct: 178 --KRVGVTKLNEAVAERLDRDPANVTLHPRYLPMISPPLPWTSPKNGAYLVHAAPFMRTK 235
Query: 470 GSRKQQ-EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL---- 524
S +Q +++ N + +F+ALD LG T W +N+ V V+ +W SG +AG+
Sbjct: 236 DSPEQHLHVMEAHRLNGLDDIFQALDKLGQTAWAINRPVFDVMAVVWNSGKELAGIPVRD 295
Query: 525 ----VDRNDV---LIPEKPLSEDMTEVQKW----KWSVRKAKKINQERHSQRCDTELKLS 573
+D +D+ L+ PL + E + K R + + QRC +L
Sbjct: 296 PHLNLDVSDLQSELLKNDPLEDGSQESPRMEGERKEIYRSLLATRRSAYGQRCSVNYQLE 355
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+AR +E FY+PHN+DFRGRAYP+ +LNH+ D+ RG+L FAE + LG+ GL WLK+
Sbjct: 356 IARAYLNET-FYFPHNVDFRGRAYPLPANLNHIGDDISRGLLTFAERKELGERGLFWLKV 414
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLAN G +K S D RLAF E HL +I DSA++P++G WWL +EDP+Q LAACI L+
Sbjct: 415 HLAN--KAGYDKASLDERLAFTEGHLKDINDSADHPLDGPGWWLKSEDPWQTLAACIELT 472
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
EAL+S P S LP+HQDGSCNGLQHYAALG + VNL+ G +P DVYS++A
Sbjct: 473 EALRSDDPTKYKSRLPVHQDGSCNGLQHYAALGGDVEGGREVNLIPGIRPGDVYSKVATE 532
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V++++ +D+ +AK L + RK+VKQTVMT+VYGVTFVGAREQI+R+L++
Sbjct: 533 VNKLVNQDAENGHD------IAKALKGHIKRKVVKQTVMTTVYGVTFVGAREQIRRQLKD 586
Query: 814 KGHITDDRQLFAAACYAAKV 833
G I L+ +A Y A +
Sbjct: 587 LGVIPVP-NLYISAAYVATL 605
>gi|307103643|gb|EFN51901.1| hypothetical protein CHLNCDRAFT_27382 [Chlorella variabilis]
Length = 599
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 181/412 (43%), Positives = 253/412 (61%), Gaps = 18/412 (4%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-------GNCMKKVFEA 492
Y+PML+PP W N GG+L L + VMR GSR QQE L + G + +V++A
Sbjct: 9 YLPMLIPPVPWLRNNLGGHLTLRNTVMRIRGSRLQQEMLDAADQEWGEGRGPGLSRVYDA 68
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE--KP--------LSEDMT 542
L++LGST W +N+ V V+E++W GG + + + ++ +P KP +
Sbjct: 69 LNSLGSTAWAINQDVFRVVETVWAWGGGVCDIPPKVNLPLPRDLKPGFRQHRHAPGQLQF 128
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
++ + + + +K N+E HS RCD E KL++AR E FY+PHN+DFRGRAYPMHPH
Sbjct: 129 YLRTRRADISRMQKKNRELHSLRCDMEYKLAIAREFVKEPRFYFPHNVDFRGRAYPMHPH 188
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
LNHL +D+ RG+L+FAEGRPLG+ GL WL + ANL+ GV+KL GR+ +VE+HL +I
Sbjct: 189 LNHLGADLSRGLLQFAEGRPLGEHGLFWLYVQAANLWGQGVDKLPLWGRVKWVEDHLAQI 248
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ +W AE+PFQ L+ C + +A S P +SH+P+HQDGSCNGLQHY
Sbjct: 249 LMTTRGSHGQVAYWWQAENPFQFLSTCFEIHKANASGDPARFVSHVPVHQDGSCNGLQHY 308
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALGR+ AVNL ++P R + ++ PS P L+ L +
Sbjct: 309 AALGRDFSGGHAVNLCPTDRPQAGGGARKPRTPDRACIHASNQPSNQPDLLMCHTLCAGL 368
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
DRKLVKQTVMTSVYGVTFVGAR Q+ RL+E+G D++ ++ +CY AKV+
Sbjct: 369 DRKLVKQTVMTSVYGVTFVGARAQVGNRLKERG-FEDNQFMYKVSCYTAKVT 419
>gi|225680077|gb|EEH18361.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb03]
Length = 1319
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 223/664 (33%), Positives = 345/664 (51%), Gaps = 54/664 (8%)
Query: 167 YREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGP 226
Y EM++R+ L V+ W + + +++ I P+ P + L W
Sbjct: 249 YAEMRQRR---LESDCVESAIARWHKESENLRKVGVNPI-----PSKP-MGALLYDWHTQ 299
Query: 227 LSEAIE----------REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L I+ ++ +M ++ +P++ + DK+A + + +
Sbjct: 300 LMSKIKEELERIEESEQKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGV 359
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLE----KTKNYKRKKIIADTEEVLSKEKELLRKR 332
D+ V++ +++G +I E F E + N + K I +++ ++ KR
Sbjct: 360 DKGVKLTILVMYLGKSIHDEFMAMQFRELENKSSSNGRTSKFIDKLVHKGTRKAQVQWKR 419
Query: 333 VNSLIK-SKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391
+ + + S+R +E W QAK+G+ L +L+ +A V PV D
Sbjct: 420 LIAKFEHSQRPVE------------WSPIVQAKIGACLALMLLSSATV--PVFSKDPKTN 465
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKW 450
+ + + F+ + + + R G V ++E L R +L ++PM+ PP+ W
Sbjct: 466 KTKRSDQMAFRRVYQ---LERGFRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPW 522
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVL 508
GG+L PS V+R G Q +++ + VF L LG T W++N+ VL
Sbjct: 523 TSARDGGFLKTPSPVLRVKEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVL 582
Query: 509 SVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W SG IA L D+ PE+P +ED + + + A HSQRC
Sbjct: 583 EVMFEAWNSGEEIANLAPETPDIPEPERPNTEDRDALTDYYRAKMHAANTRSSYHSQRCF 642
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L +AR ++E FY PHNLDFRGRAYPM P+ N + +D CRG+L F +GR LG SG
Sbjct: 643 QNFQLEIARAYRNET-FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSG 701
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKIHLAN+F G +K S R F +HL +I DSA N + G +WWL A DPFQCLA
Sbjct: 702 LRWLKIHLANVF--GFDKASFQEREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLA 759
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
ACI L+ A++ P +SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y
Sbjct: 760 ACIELTNAMQLEDPTKFVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIY 819
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +A V +++D+ AK+L +++ RK+VKQTVMT+VYGVTF+GA Q+
Sbjct: 820 TGVAEHVKASIQKDAADGNET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQV 873
Query: 808 KRRL 811
+++L
Sbjct: 874 RKQL 877
>gi|340508072|gb|EGR33869.1| hypothetical protein IMG5_034000 [Ichthyophthirius multifiliis]
Length = 926
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 234/688 (34%), Positives = 365/688 (53%), Gaps = 70/688 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L RQ+ E + ++ V+++ ++ + L N+ K + WF L + I EQ+
Sbjct: 32 LYERQLLLEQSSQDQAVNKFFQVYESLSNFGLNVNMGFAKQHIVQWFPNLCKVIREEQQQ 91
Query: 238 QRT---KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE----------DRCVQVVQ 284
R K ++ YA + + A+K+AVI + ++M ++ E DR +
Sbjct: 92 CRLGTLKGERKYYAQFLAQIEAEKLAVISLTELMKCILKLSEKEKKERLDQKDRVIVSKL 151
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
IG ++ + K ++K + +++ ++ + N L+ + +
Sbjct: 152 LFAQIGKSVNVQYIFQQEEALKKEKEKKDLDELVQQMKTENQ-------NQLLNNIYTNK 204
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIET----------------AYVQHPVNPADY 388
+ K+ N E ++TQ K+GS LV ++ E +Y++ N
Sbjct: 205 SNKIQINYEQLGIPKETQYKIGSLLVYVMKECIKIRNEDNFWVSLLVPSYIKSKRNQGFV 264
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPK 448
+V F H Q+T K D L + LDRS +PM+ PP
Sbjct: 265 GVINVNQYFLHSM-------NQETDK------TDSLFMH-LDRS--------LPMIYPPA 302
Query: 449 KWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
KW+ Y GGY P+++MR S+ Q+ KS+ + KV+E L+ +G T WR+NK+VL
Sbjct: 303 KWQDYEMGGYYLRPTHLMRFEDSQLQE---KSLFNTDLSKVYEILNIIGKTPWRINKRVL 359
Query: 509 SVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER--HSQRC 566
+V+E IW GG+I G + + + E + +K + +KI Q+R HS R
Sbjct: 360 NVMEKIWEEGGDI-GEIPKKYYDYTNYIHQYQVDECKDYKEKAKLMRKIQQQRDIHSNRS 418
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
D LKL VAR ++ + Y+PHN+DFRGR YP+ PHLNH+ +D CRG+LEF+E + +GK+
Sbjct: 419 DFLLKLKVARAFQNLDRIYFPHNVDFRGRLYPIPPHLNHIGADRCRGLLEFSESKRIGKT 478
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G WLK+H +NL GV+KLS D R+A+ E+ I A +PI +R WL ED +Q L
Sbjct: 479 GWYWLKVHTSNLL--GVDKLSFDQRVAYTESQFENIKRWASDPIK-NREWLQVEDCWQAL 535
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
+A +SEAL+ +P ISHL +H DGSCNGLQHYAA+GR+ A VNL KP D+
Sbjct: 536 SAIFEVSEALQLENPEDHISHLHVHMDGSCNGLQHYAAIGRDKYGAEQVNLRDSIKPGDL 595
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V + + D + S++ + +AK L Q+ RK+VKQTVMTSVYGVTFVGAR+Q
Sbjct: 596 YSHVASMVEQKIDEDCKNELSENYE--IAKKLQGQIKRKIVKQTVMTSVYGVTFVGARQQ 653
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVS 834
I R+L+++ + ++ + A+ Y A V+
Sbjct: 654 ILRQLKDRDFMNEEDN-YKASYYLATVT 680
>gi|298708570|emb|CBJ30655.1| mitochondrial DNA-directed RNA polymerase [Ectocarpus siliculosus]
Length = 1167
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 240/737 (32%), Positives = 372/737 (50%), Gaps = 111/737 (15%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIERE 234
++ L + Q+ +E ++ + ++Y ++ +++ + I+ L W+ L E+IERE
Sbjct: 281 YSTLYQMQLDREDQSHQEACEKYGKMVKELMTMGKGTQMKPIERLLTTWYPALKESIERE 340
Query: 235 Q---------------KMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
Q K + + Y + +L ADK AV+VMH+++ L++A ++
Sbjct: 341 QEAVWANVTDDNKGTVKTSGSFGGRGTYGAFLVMLKADKQAVLVMHEVVNLILASG-NKG 399
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
V V+A + ++ E+ + + K+ K+ + R +V+SL
Sbjct: 400 VSTVRACTRVAELVQAEV---NLMRMKKDGKKGQ----------------RVQVSSLRHV 440
Query: 340 KRV-MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP-------- 390
+ V +AQ L E W Q KLG+ L++LLIETA + +
Sbjct: 441 REVNKQAQDALDMLEDTHWPIGAQVKLGAALIKLLIETACWTYDKESGVVTAWDKGGAER 500
Query: 391 ----------PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP- 439
P + AF H I+K K +++ + + + +D + P
Sbjct: 501 GGGERDTEGFPMPKAAFVH---DIIKG---KNSRKGSLTMAPEIFSKMVDEDISRLATPR 554
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+VPMLVPP W N+GG+L L + +MRT G Q+ AL+ +++V++AL+ LG
Sbjct: 555 FVPMLVPPLDWIKPNRGGFLRLRAQIMRTKGEAAQKHALRRAD---LRQVYKALNCLGKV 611
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-------LSEDMTEVQ------- 545
+WR+N VL + + L D+ +P +P L VQ
Sbjct: 612 RWRINGHVLDTVMVCLRDKIAVGDLPVIKDLPLPPRPDGVTVDRLGRLRAPVQGEHEDEE 671
Query: 546 ----------KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+K + K K+ N HS RCD ++K+ +A+ +D Y+P+N+DFRGR
Sbjct: 672 VFKERRQKHYAYKRLLEKTKQKNANMHSLRCDMKIKVDIAQEFRDHV-IYFPYNMDFRGR 730
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+LN L SD RGVL F E +PLG+ GL WLK+HLANL+ G +K+S D R+AFV
Sbjct: 731 TYPIPPNLNILGSDFSRGVLVFDEAKPLGEKGLYWLKVHLANLY--GEDKVSFDDRVAFV 788
Query: 656 ENHL----YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
E H+ E+ DSA P+ G WW A+ P+QCLA C +L+ AL S P +S LP+H
Sbjct: 789 EKHMDESWREVRDSALRPLEGECWWKDADSPWQCLAVCADLTAALDSPDPARYLSRLPVH 848
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG + A VNL +P DVYS + V + + +++ P +
Sbjct: 849 QDGSCNGLQHYAALGLDANGGAQVNLSPSPEPQDVYSGVCDVVKKKVALEASTVPPEGAS 908
Query: 772 AL------LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK--GHITD---- 819
+ +AK++ +DRK+VKQTVMTSVYGVTFVGAR QI+ L +K GH +
Sbjct: 909 VVDLANHEIAKMVDGLIDRKVVKQTVMTSVYGVTFVGARAQIQNVLGDKMIGHTDESGVP 968
Query: 820 ----DRQLFAAACYAAK 832
+ ++ A+ Y AK
Sbjct: 969 SAEVEENVYKASAYVAK 985
>gi|254583510|ref|XP_002497323.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
gi|238940216|emb|CAR28390.1| ZYRO0F02882p [Zygosaccharomyces rouxii]
Length = 1311
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 235/686 (34%), Positives = 359/686 (52%), Gaps = 71/686 (10%)
Query: 164 LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPH 215
L ++ + ++R L R E W+ +E K IEKRL + LP
Sbjct: 366 LDDFNQERQRA---LENRATDAAKERWKHDFEEAKARGDISIEKRLNVKLWQWYSAMLPL 422
Query: 216 IK-------GLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
+K +F G+ A + + K +R + Y P++ L+ +K+ VI + +++
Sbjct: 423 VKEEVKLCSQVFDGYANEKKNASKEDAKQERARLD---YGPYLSLVDPEKMCVITILELL 479
Query: 269 GLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL 328
L G ++ +A + +G AIE E R L+ R L K
Sbjct: 480 KLNSTGGIIEGMRTARAVISVGKAIEMEFRSEQLLKSESQAFRD---------LGKNSHE 530
Query: 329 LRKRVNSLIKSKRVMEAQKLLKNEETK-PWGRDTQAKLGSRLVELLIETAYVQ-HPVNPA 386
L+K + +R + +K EE K W + +AK+GS L+ +LI + V+ V+P
Sbjct: 531 LKKYL------QRAKSTFRSMKIEENKIMWPQAARAKIGSILISMLIHVSKVEVEGVDPV 584
Query: 387 D----YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPY 440
Y PAF H ++ H G K GV++ ++ L+ R +
Sbjct: 585 TKQKVYGEA---PAFAHGYQY---HNGSK----LGVLKIHRSLVHQLNGERLVASVQPQL 634
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGST 499
+PMLV P+ WK + GGY + S ++R+ S +Q LK+V+ + V++ L+ LG T
Sbjct: 635 LPMLVKPRPWKNWKSGGYYYTQSTLIRSKDSPEQIAYLKAVSDATAINTVYDGLNVLGET 694
Query: 500 KWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKK 556
W VN+ + V+ +W SG +I G V L+P P D + ++WK ++
Sbjct: 695 PWTVNRPLFEVMSKVWNSGKPFLDIPG-VQEKLTLLPPPPREADPSVHREWKLKNKELAN 753
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
S RCD+ KL +AR E+ FY+PHNLDFRGRAYP+ PH NHL +D+ RG+L
Sbjct: 754 RFSSNRSTRCDSNYKLEIARAFLGEK-FYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLL 812
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F G+ LG GL+WLK+HL+NLF G +K S R+ F + H+ +I SA++P+ WW
Sbjct: 813 FWNGKRLGPQGLKWLKVHLSNLF--GFDKASLLERVQFADEHIDDIKQSAQDPLKEDAWW 870
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+ AE P+Q LA C+ L++A+K +P ISH P+HQDG+CNGLQHYAALG + A VN
Sbjct: 871 MKAEKPWQALATCMELNDAMKLDNPEDFISHQPVHQDGTCNGLQHYAALGGDIDGATQVN 930
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
LV ++P DVY+ +A V ++ + K +A IL D++ RK+VKQTVMT+VY
Sbjct: 931 LVPNDRPQDVYAHVAKLVIARLEIAAAKGDE------VAMILKDKITRKVVKQTVMTNVY 984
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQ 822
GVT+VGA QI ++L +I +DR+
Sbjct: 985 GVTYVGATFQIDKQL---SNIFEDRK 1007
>gi|226291871|gb|EEH47299.1| DNA-directed RNA polymerase [Paracoccidioides brasiliensis Pb18]
Length = 1408
Score = 353 bits (907), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 209/588 (35%), Positives = 320/588 (54%), Gaps = 35/588 (5%)
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
++ +M ++ +P++ + DK+A + + + D+ V++ +++G +
Sbjct: 429 QKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILVMYLGKS 488
Query: 293 IEQEIRIHSFLE----KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIK-SKRVMEAQK 347
I E F E + N + K I +++ ++ KR+ + + S+R +E
Sbjct: 489 IHDEFMAMQFRELENKSSSNGRTSKFIDKLAHKGTRKAQVQWKRLIAKFEHSQRPVE--- 545
Query: 348 LLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKH 407
W QAK+G+ L +L+ +A V PV D + + + F+ + +
Sbjct: 546 ---------WSPIVQAKIGACLALMLLSSATV--PVFSKDPKTNKTKRSDQMAFRRVYQ- 593
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ R G V ++E L R +L ++PM+ PP+ W GG+L PS V+
Sbjct: 594 --LERGFRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARDGGFLKTPSPVL 651
Query: 467 RT-HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
R G Q +++ + VF L LG T W++N+ VL V+ W SG IA L
Sbjct: 652 RVKEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKINRGVLEVMLEAWNSGEEIANL 711
Query: 525 V-DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
+ D+ PE+P +ED + + + A HSQRC +L +AR ++E
Sbjct: 712 APETPDIPEPERPNTEDRDALTDYYRAKVHAANTRSSYHSQRCFQNFQLEIARAYRNET- 770
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FY PHNLDFRGRAYPM P+ N + +D CRG+L F +GR LG SGLRWLKIHLAN+F G
Sbjct: 771 FYLPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFNKGRELGTSGLRWLKIHLANVF--GF 828
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K S R F +HL +I DSA N + G +WWL A DPFQCLAACI L+ A++ P
Sbjct: 829 DKASFQEREQFSMDHLEDIRDSAINGLKGKKWWLDAADPFQCLAACIELTNAMQLEDPTK 888
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
+SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V +++D+
Sbjct: 889 FVSHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKASIQKDAA 948
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
AK+L +++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 949 DGNET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 990
>gi|295667525|ref|XP_002794312.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286418|gb|EEH41984.1| DNA-directed RNA polymerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1405
Score = 352 bits (903), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 207/586 (35%), Positives = 320/586 (54%), Gaps = 31/586 (5%)
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
R+ +M ++ +P++ + DK+A + + + D+ V++ +++G +
Sbjct: 429 RKTRMLPEDAKRVEISPYLRAIKMDKLAALTILSTFNALNKNGVDKGVKLTILVMYLGKS 488
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 352
I E L + +N R + + + K V+ + +V + + + E
Sbjct: 489 IHDEFMAMQ-LRELENKSRSN---------GRTSKFIDKLVHKGTRKAQVQWKRLIARFE 538
Query: 353 ETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
+++ W QAK+G+ L +L+ +A V PV D + + + F+ + +
Sbjct: 539 QSQRPVEWSPIVQAKIGACLALMLLSSATV--PVFSNDPKTNKTKRSDQMAFRRVYQ--- 593
Query: 410 QKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+ R G V ++E L R +L ++PM+ PP+ W GG+L PS V+R
Sbjct: 594 LERGFRVGYVHAHDRIVEKLRREPLGDLLAKHLPMVCPPRPWTSARNGGFLESPSPVLRV 653
Query: 469 -HGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV- 525
G Q +++ + VF L LG T W+VN+ VL V+ W SG IA L
Sbjct: 654 KEGDVSQLSYVETAAARGDLDTVFAGLTVLGKTGWKVNRGVLEVMLEAWNSGEEIANLAP 713
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ D+ PE+P +ED + + + A HSQRC +L +AR ++E FY
Sbjct: 714 ETPDIPEPERPNTEDRDALIDYYRAKMHAANTRSSYHSQRCFQNFQLEIARAYRNET-FY 772
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHNLDFRGRAYPM P+ N + +D CRG+L F++GR LG SGLRWLKIHLAN+F G +K
Sbjct: 773 LPHNLDFRGRAYPMPPYFNQMGADHCRGLLLFSKGRELGTSGLRWLKIHLANVF--GFDK 830
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S R F +HL +I DSA N + G +WW+ A DPFQCLAACI L+ A++ P +
Sbjct: 831 ASFQEREQFSMDHLEDIRDSAINGLKGKKWWVDAADPFQCLAACIELTNAMQLEDPTKFV 890
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SHLP+HQDGSCNGLQHYAALG + + A VNL ++P+D+Y+ +A V +++D+
Sbjct: 891 SHLPVHQDGSCNGLQHYAALGGDIIGAQQVNLEPSDRPSDIYTGVAEHVKASIQKDAADG 950
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
AK+L +++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 951 NET------AKLLENKITRKIVKQTVMTNVYGVTFLGAIRQVRKQL 990
>gi|242818630|ref|XP_002487156.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713621|gb|EED13045.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1377
Score = 352 bits (902), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 228/674 (33%), Positives = 366/674 (54%), Gaps = 59/674 (8%)
Query: 162 IKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFL 221
I +E RE+++++ L + V + W+R E + + A I+ I L
Sbjct: 333 IDSEEVRELQRKRQAELEGKAVDTAKKRWQR---EMETMRAAGIDTSGGGKT--IASLLE 387
Query: 222 GWFGPLSEAIEREQKM----QRTKKQKA-----AYAPHIELLPADKVAVI-VMHKMMGLV 271
W+ + ++ E K+ +RT K A +A + +LP D +A I VMH +
Sbjct: 388 QWYNDMVLKLKEEIKIGRPSERTSKLSADEKNREHADFLRILPPDTLAAITVMHVIQLFA 447
Query: 272 MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT-KNYKRKKIIADTEEVLSKEKELLR 330
AG E + ++V +G ++ E S + K+ ++ + K I E R
Sbjct: 448 RAGVE-KGLKVPTIMTSLGQEVQNEFIAQSMIAKSERDSRHHKFIKQVVEN--------R 498
Query: 331 KRVNSLIKSKRVM-EAQKLLKNEETK-PWGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
K+ IK K+++ E + ++ E++ W D AK+G L+ +L + A + PV D
Sbjct: 499 KKKAGRIKFKKLLTEMKSNSRDVESEFTWPVDVHAKVGGALLSVLFDCA--KAPVIQED- 555
Query: 389 SPPDVR-------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML-IPY 440
PD + AF+H ++ +++G++ P V L R A + + +
Sbjct: 556 --PDTKKRIMVMESAFQHSYEI-------NRGRKFGLLHAHPEVTRRLIREAPNAVQARH 606
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGS 498
+PML P+ W ++KGG+L S +MRT Q + K++ N + +V LD LG
Sbjct: 607 MPMLSEPQPWTAFDKGGFLAQRSPIMRTTPGDTLQHSYMKKALENNGLPEVRAGLDILGK 666
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
T W +N V V+ W +G A + + + +PEKP ++ ++ + +R+ + +
Sbjct: 667 TAWTINNDVFDVMLEAWNTGEAFAKIPPLDPQIPMPEKPADDNPEAIKVYNNKLREVENL 726
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
HSQRC ++ +AR K++ FY PHN+DFRGRAYP+ +LN +S+D R +L F
Sbjct: 727 RSGLHSQRCFINFQMEIARAYKNQT-FYLPHNMDFRGRAYPLPAYLNQMSADNARSLLLF 785
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
+G+PLG++GLRWLKIHL+N++ G +K S R F HL ++ DSA ++G +W+L
Sbjct: 786 KKGKPLGEAGLRWLKIHLSNVY--GFDKASLKEREEFTMQHLEDVLDSANKGLHGRKWFL 843
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
AEDP+QCLAAC L ALK +P +S LP+HQDGSCNGLQHYAALG + A VNL
Sbjct: 844 EAEDPWQCLAACCELRNALKLENPTEYVSRLPVHQDGSCNGLQHYAALGGDMEGAQHVNL 903
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
G++P D+Y+ ++ V E ++RD+ + H +AK+L+ ++ RK+VKQTVMT+VYG
Sbjct: 904 EPGDRPKDIYTGVSDFVTEKVERDA---AAGHE---IAKLLVGKIKRKIVKQTVMTNVYG 957
Query: 798 VTFVGAREQIKRRL 811
VTFVGA Q++R++
Sbjct: 958 VTFVGAIRQVRRQI 971
>gi|302902552|ref|XP_003048669.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
gi|256729603|gb|EEU42956.1| hypothetical protein NECHADRAFT_95384 [Nectria haematococca mpVI
77-13-4]
Length = 1342
Score = 351 bits (901), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 210/600 (35%), Positives = 334/600 (55%), Gaps = 43/600 (7%)
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM--GLVMAGHEDRCVQVVQ 284
+ E+ ERE K + ++ Y P + ++A + + ++ G VM D+ V +++
Sbjct: 377 VEESEERESKTEE-DLERCIYGPILRAANPTRLAAVSILAVLNSGAVMG--LDKGVTMIR 433
Query: 285 AAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT----EEVLSKEKELLRKRVNSLIKSK 340
+ +++IR K +R + + T E+V + E+ ++ L +
Sbjct: 434 LVNDVAKVAQEDIRAQIADNAAKERRRLRKVKYTANPDEQVETSEQAIIADAHEPLPEID 493
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPA 396
+A+K+ W + ++GS LV+ L+ETA V Q+ + S V+PA
Sbjct: 494 DDSDARKV--------WSTTVRIRIGSILVKSLMETAEVNVIKQNQLTREKIS--QVQPA 543
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNK 455
F H + K+ GV +P ++E R L ++PM+ P+ WK N
Sbjct: 544 FSHMH-------AMRKGKKIGVFALNPFLVEQFKREPVGDFLAKHLPMIAEPQPWKNMNT 596
Query: 456 GGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG+L ++R +Q+ ++ M +VF+ LD LG T WR+N ++L V+
Sbjct: 597 GGFLQSKVSLVRIKSGDDEQKLYTKAAIQRGDMDQVFKGLDVLGKTPWRINDKLLDVMVE 656
Query: 514 IWVSGGNIAGLVDRNDVL-IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
W +G IA + N VL P +P + D + W +++ + HSQRC L+L
Sbjct: 657 AWNTGHEIANIPALNPVLQSPPEPETPDPLVRRTWMRALKSVENHRSALHSQRCFMNLQL 716
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR + ++ Y+PHN+D+RGRAYP+ +LNH+ +D R +L+FA G+ LG++GLRWLK
Sbjct: 717 EIARAFR-KQVIYFPHNVDYRGRAYPLPTYLNHMGADHMRSLLKFANGKELGETGLRWLK 775
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH+AN++ G +K S D R AF ++L +I +SA NP++GSRWWL EDP+QCLAAC L
Sbjct: 776 IHMANVY--GFDKASFDEREAFATDNLDKIIESATNPLHGSRWWLKGEDPWQCLAACFEL 833
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
A P +S+LP+HQDG+CNGLQHYAALG +T A VNL+ G +PADVYS +A
Sbjct: 834 KAAHDLPDPTKFVSNLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGSRPADVYSAVAN 893
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V E + +++ + LA+I D++ RK+VKQTVMT+VYGVTF GA++Q+ ++++
Sbjct: 894 LVRESISKEAESKEA------LAEICKDKITRKVVKQTVMTNVYGVTFEGAKKQVAKQID 947
>gi|452978725|gb|EME78488.1| hypothetical protein MYCFIDRAFT_205064 [Pseudocercospora fijiensis
CIRAD86]
Length = 1345
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 226/625 (36%), Positives = 336/625 (53%), Gaps = 53/625 (8%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKK---------QKAAYAPHIELLPADKVAVIVMHK 266
+ L W+ L A+E E +Q KK + Y P++E+LP KVA +
Sbjct: 299 MAALMWQWYRKLLPALEFE--LQEAKKTMTDMRKIDDRNVYGPYLEMLPIKKVAANTILF 356
Query: 267 MMGLVMAGHEDRCVQVVQA-------AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE 319
+M MA +DR V + V + +IE E + S + + + + T
Sbjct: 357 IMTR-MANGKDRSTGVYASEAKLNSLTVTLSKSIEAEC-LASVARQKASAPQNRKTNTTS 414
Query: 320 EVLSKEKELLRK---RVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
+ + L+K + N+ K+K +Q +L E W AKLG+ LV ++E
Sbjct: 415 HIRRQAVSALKKGIDKANTSPKTKAKKASQAMLAEVE---WPLVVHAKLGAMLVSKVLEC 471
Query: 377 AYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A++ QHP + ++PAF HR K G+KT G++ +P +L+ L
Sbjct: 472 AHLPVTRQHPRTKEMIT--QMQPAFLHRLKY---EKGKKT----GIISPNPALLDKLQSE 522
Query: 433 AKHMLIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEALKSVT-GNCMKKV 489
LI +PM+V PK W G++ GGYL + V+R G + +E + N + +
Sbjct: 523 PVGSLIAKRMPMVVEPKPWTGWSDGGYLHYSNPVLRLQQGDKSSKEYFMAADQNNDLDTL 582
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND--VLIPEKPLSEDMTEVQKW 547
++ L LG W+V+++V V W SG IA N + PE S D E +KW
Sbjct: 583 YKGLTALGKVPWKVHQEVFKVQLEAWNSGEAIANFAPLNPEMKMPPEPDSSADPLERRKW 642
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+R HS+RC +L +AR + +E Y+PHN+DFRGRAYP+ P+LNH+
Sbjct: 643 LAEIRALDNKKGGYHSKRCFQNFQLEIARTLLNET-LYFPHNMDFRGRAYPIPPYLNHMG 701
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+D RG+L FA+G+ LG++GLRWLKIH+A + G +K S + R+ F HL +I+DS
Sbjct: 702 ADNVRGLLVFADGKELGENGLRWLKIHMATV--AGHDKASLEERVEFTMGHLDDIYDSVR 759
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+P+ G RWWL AED +Q LAAC L+ AL S P +SHLP+ QDG+CNGLQHYAALG
Sbjct: 760 DPLGGRRWWLQAEDAWQTLAACFELTAALDSPDPTKFVSHLPVQQDGTCNGLQHYAALGG 819
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ AA VNL ++PADVY+ +A V +++D + +P +A+ L ++ RK V
Sbjct: 820 DKAGAAQVNLEPSDRPADVYTAVAEAVKAEVEKDVKEG---NP---IAQKLQGRITRKCV 873
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLE 812
KQ VMT+VYGVTF GAR Q++++LE
Sbjct: 874 KQPVMTNVYGVTFFGARAQVRKQLE 898
>gi|453081581|gb|EMF09630.1| DNA/RNA polymerase [Mycosphaerella populorum SO2202]
Length = 1450
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 223/598 (37%), Positives = 320/598 (53%), Gaps = 70/598 (11%)
Query: 247 YAPHIELLPADKVAV-IVMHKMMGLVMAGHEDRCVQVVQA-------AVHIGMAIEQEI- 297
Y P++ELLP KVA ++H M MAG ++ + ++ A+++ A+E E
Sbjct: 464 YGPYLELLPVKKVAANTILHVMT--RMAGDKNTITEQFESETKLGTLAINLSKALESEWL 521
Query: 298 -------------RIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
+ HS T N +R+ I A EK + + R KSKR E
Sbjct: 522 ATVAGKGGKSASKKPHS----TANLRRRAIRA-------LEKGIEKSRPG---KSKRKKE 567
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
Q L E W + KLG+ LV L+ETA + +HP + ++PAF HR
Sbjct: 568 IQAALAQVE---WPVSVKVKLGAMLVSKLMETAQLPVTREHPRTKEQVT--QMQPAFMHR 622
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGL-DRSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
K KR GV +P +++ + +L +PM+VPP W G+ KGGYL
Sbjct: 623 MKYY-------HGKRVGVFMPNPALIQKIKSEPVGSLLAKRMPMVVPPLPWTGWAKGGYL 675
Query: 460 FLPSYVMRTHGSRKQQEA--LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R K + + + + +++ L L W++++ V +V W S
Sbjct: 676 HYSNPILRLAAGDKSGKDYFMAADEKQDLSTLYKGLTALSKVPWKIHRGVFNVQLEAWNS 735
Query: 518 GGNIAGLVDRNDVLI--PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
G IA N L PE S D + +W+ R HS+RC +L +A
Sbjct: 736 GEEIANFAPLNPELPVPPEPDSSADPVQRLQWQQKCRDIANSRSGNHSKRCFQNFQLEIA 795
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R M +E Y+PHN+DFRGRAYP+ P+LNH+ +D RG+L F EG+ LG+SGLRWLKIH+
Sbjct: 796 RTMLNET-LYFPHNMDFRGRAYPIPPYLNHMGADNVRGLLVFGEGKELGESGLRWLKIHM 854
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
A + G +K S + R+ F HL +I+DSA+NP++G RWWL AED +Q LAAC L A
Sbjct: 855 ATV--AGYDKASMEERIEFTMQHLDDIYDSAKNPLSGRRWWLQAEDAWQTLAACFELVAA 912
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L S P ISHLP+ QDG+CNGLQHYAALG + AA VNL ++PADVY+ +A V
Sbjct: 913 LDSPDPTKYISHLPVQQDGTCNGLQHYAALGGDKAGAAQVNLEPSDRPADVYTAVAEAVK 972
Query: 756 EIMKRDS-NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ +D+ + +P +A+ L ++ RK VKQ VMT+VYGVTF GAR Q++R+LE
Sbjct: 973 AKIAKDAQDGNP-------VAQKLDGRITRKCVKQPVMTNVYGVTFWGARVQVRRQLE 1023
>gi|115388207|ref|XP_001211609.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
gi|114195693|gb|EAU37393.1| hypothetical protein ATEG_02431 [Aspergillus terreus NIH2624]
Length = 1382
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 221/678 (32%), Positives = 357/678 (52%), Gaps = 47/678 (6%)
Query: 175 FNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
+N LR++Q++ + + ER E+ + + I+ + + W L I+
Sbjct: 348 YNQLRQQQLEANSIRSSLERWRQEFNDRQKSGIDATAGGK--RLGSIMNQWHSDLVSRIQ 405
Query: 233 REQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
E K+ RT +K++ Y + L +++A + + ++ G ++ ++V
Sbjct: 406 EELKLIEEAESNPVRTFEQKERCEYGVFLRSLDPERLAALTILAVISTFSRGGMEKSIKV 465
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
IG ++ E+ L+K +++ A E + ++++ R R ++++S
Sbjct: 466 SAIVTTIGKELQDELIAEKTLQKQSGADARRVKAVKEMLAGRKQKDGRARWQNIVRS--- 522
Query: 343 MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV--RPAFRHR 400
L + + T W +AK+G+ L+ LL E + + +V +PAF+H
Sbjct: 523 -----LEQEDPTVVWPPRVKAKIGAVLMSLLFEVGKAPVAMQHSQSKKQEVTMQPAFQHS 577
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
++ G G + P +++ + + +L ++PM+ PK W G GGY
Sbjct: 578 YQISWGRKG-------GYIHLHPEIVKIITKEPTADLLGRHLPMICKPKPWGGMKDGGYF 630
Query: 460 FLPSYVMR-THGSRKQQEALKSVTGN-CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R T G Q +K+ N +K++ E LD LGST W +N+ V V+ W
Sbjct: 631 LYQNNIVRSTPGETLQPSYMKAALQNDGLKQIREGLDILGSTGWTINRDVFDVMLEAWNL 690
Query: 518 GGNIAGLVD-RNDVLIPEKPLSEDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVA 575
G IA L D+ P +P E+ E +K W ++R + HS RC ++ VA
Sbjct: 691 GEPIANLSPLEPDLPHPPRPAPEEGYEAEKKWDNAMRDIENRRAGMHSNRCFQNFQMEVA 750
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R ++E FY PHN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG +GL+WLKI +
Sbjct: 751 RAYRNET-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGTTGLKWLKIQI 809
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
ANL G +K S R F ++HL +I DSA ++G RWWL AEDP+QCLAAC L A
Sbjct: 810 ANL--AGFDKASLSEREKFADDHLDDILDSANKGLHGRRWWLNAEDPWQCLAACCELRNA 867
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L+ +P S LPIHQDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A V
Sbjct: 868 LQYQNPAEYPSRLPIHQDGSCNGLQHYAALGGDSIGAQQVNLEPSDRPSDVYTGVAEFVK 927
Query: 756 EIMKRDSNK-DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+ R++ + DP +AK L ++ RK+VKQTVMT+VYGVTF+GA +Q++++L +
Sbjct: 928 AAVAREAARGDP-------VAKFLDGRITRKIVKQTVMTNVYGVTFMGAMKQVRKQLVDH 980
Query: 815 GHITDDRQLFAAACYAAK 832
Q A Y A+
Sbjct: 981 YPDLSAEQKQTGALYIAR 998
>gi|350636444|gb|EHA24804.1| hypothetical protein ASPNIDRAFT_48810 [Aspergillus niger ATCC 1015]
Length = 1367
Score = 348 bits (894), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 232/694 (33%), Positives = 365/694 (52%), Gaps = 57/694 (8%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY E + R +NL R++Q++ + W + +D K L EKRL
Sbjct: 339 EYAEAESRDMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 391
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 392 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 451
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 452 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLRA-VKQTLS---- 506
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 507 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 563
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 564 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 616
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 617 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 676
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 677 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 736
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 737 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 795
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 796 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 853
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 854 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 913
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 914 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 967
Query: 801 VGAREQIKRRL-EEKGHITDDRQLFAAACYAAKV 833
+GA +Q++++L + +T D++ A A KV
Sbjct: 968 MGAMKQVRKQLIDHYPELTQDQKHQGAIYIARKV 1001
>gi|134082638|emb|CAK42532.1| unnamed protein product [Aspergillus niger]
Length = 1367
Score = 348 bits (893), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 232/694 (33%), Positives = 365/694 (52%), Gaps = 57/694 (8%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY E + R +NL R++Q++ + W + +D K L EKRL
Sbjct: 339 EYAEAESRDMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 391
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 392 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 451
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 452 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLRA-VKQTLS---- 506
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 507 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 563
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 564 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 616
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 617 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 676
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 677 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 736
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 737 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 795
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 796 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 853
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 854 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 913
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 914 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 967
Query: 801 VGAREQIKRRL-EEKGHITDDRQLFAAACYAAKV 833
+GA +Q++++L + +T D++ A A KV
Sbjct: 968 MGAMKQVRKQLIDHYPELTQDQKHQGAIYIARKV 1001
>gi|452838720|gb|EME40660.1| hypothetical protein DOTSEDRAFT_74265 [Dothistroma septosporum NZE10]
Length = 1467
Score = 348 bits (893), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 223/632 (35%), Positives = 335/632 (53%), Gaps = 59/632 (9%)
Query: 216 IKGLFLGWFGPLSEAIERE-QKMQRT----------KKQKAAYAPHIELLPADKVAVIVM 264
I L W+ L A+E+E +++++T + + Y P++ELLP KVA +
Sbjct: 414 IGALMWQWYDSLLPALEKELEEVKKTLGESVLGTPGEHDRHTYGPYLELLPLKKVAANTI 473
Query: 265 HKMMGLVMAGH-------EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIAD 317
M + G +++ + Q V + AIE E + + + +K + +
Sbjct: 474 LYTMAQMARGQRNSGDTWKEQEAALGQITVGLANAIEDECTA----DMSSKQQGRKSVQN 529
Query: 318 TEEVLSKEKELLRK-------RVNSLIKSKRVMEA-QKLLKNEETKPWGRDTQAKLGSRL 369
K+ LR S K R E Q++L E W + KLG+ L
Sbjct: 530 ARNPARLRKQALRSLQVAQKADSASKKKKGRSKETNQQILSQLE---WPVSMKVKLGAML 586
Query: 370 VELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
LIETA + +HP + ++PAF HR K + KR G+V +P +
Sbjct: 587 TSKLIETAQLPVTREHPRTKQKIT--QMQPAFLHRMK-------WQKGKRVGMVTPNPAL 637
Query: 426 LEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEA--LKSVT 482
L + +L +PM+V PK W+G+ GGYL + ++R K + + +
Sbjct: 638 LVKMQSEPLGSLLAKRMPMVVEPKPWQGWKDGGYLHYSNDILRLPAGDKSGKDYFMAADR 697
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEKPLSEDM 541
+ V++ L L W+VN V V W SG IA + ++ +P +P S D
Sbjct: 698 RKELDTVYKGLTALSKVPWKVNHDVFKVQLEAWNSGDAIANFAPLHPIISLPPEPDSSDA 757
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+KW V++ + HS+RC +L +AR + +E Y+PHN+DFRGRAYP+ P
Sbjct: 758 VARRKWLSEVKELENKKSGLHSKRCFQNFQLEIARTVLNET-LYFPHNMDFRGRAYPIPP 816
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ +D R +L FAEGR LG++GLRWLKIHLA + G +K S R+AF E HL +
Sbjct: 817 YLNHMGADNVRSLLTFAEGRELGENGLRWLKIHLATV--AGHDKASMSERVAFTEEHLDD 874
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I+DS NP++G +WWL AED +Q LAAC L++AL S P +S+LP+ QDG+CNGLQH
Sbjct: 875 IYDSVRNPLDGRKWWLEAEDAWQTLAACFELTKALDSLDPTKFVSYLPVQQDGTCNGLQH 934
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALG + A VNL G++PADVY+ +A V E ++RD+ + +A+ L +
Sbjct: 935 YAALGGDKAGAKQVNLEPGDRPADVYTAVADAVKEEIERDAAAGNA------IAQKLHGR 988
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK VKQ VMT+VYGVTF GAR Q++++LE+
Sbjct: 989 LTRKCVKQPVMTNVYGVTFYGARAQVRKQLED 1020
>gi|452824377|gb|EME31380.1| DNA-directed RNA polymerase, mitochondrial [Galdieria sulphuraria]
Length = 1125
Score = 348 bits (893), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 240/709 (33%), Positives = 367/709 (51%), Gaps = 81/709 (11%)
Query: 178 LRRRQVKQ---------ETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLS 228
+R+RQV+ E + +D ++ L +++ L + L L W PL+
Sbjct: 260 VRKRQVEDPKYAEELRLEFACLQESLDRFRNLLETAVKRGDIGWLSPAQRLILSWLSPLA 319
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
AI+REQ+ + K H+ L K+A+I + + + L + E + +
Sbjct: 320 FAIKREQQRLKVKISLTKDESHLLRLEPAKLALITIQETLRLTVPRKEG--YPYLSLCLE 377
Query: 289 IGMAIEQEIRIHSF--LEKTKNYKR-------KKIIADTEEVLSKEKELLRKRVNSLIKS 339
+G A++ + L K Y++ K + +T L++ E + I
Sbjct: 378 VGKAVQTQCNAEELERLRKKLQYEQVHQETMENKQVDNTNTTLTESSESKESSNSFRI-- 435
Query: 340 KRVMEAQKLLKNEET-----KP---------------WGRDTQAKLGSRLVELLIETAYV 379
R+ + +KLLK E +P W + T ++GS LV++L++ A
Sbjct: 436 -RLHQLKKLLKRNENDKNGHRPYINLFAYRLTGNAAFWDKLTTLRVGSYLVDMLLKNAPT 494
Query: 380 QHP-VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
Q V S AF H+ ++ G K G+V C +V + L R + +
Sbjct: 495 QQVLVRTKASSDSQFVSAFWHK---TVRGNGNKLQ---GLVGCRDIVYDILSRDLSNPFL 548
Query: 439 PYVP----MLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEAL 493
+P M+V PK W G GGYL + S +MR H R Q AL++ + KV+E L
Sbjct: 549 NPLPRLRPMVVVPKPWTGPKTGGYLRIRSDLMRCEHSHRSQWNALRTAN---LSKVYEGL 605
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-------DMTEVQK 546
+ LG+T W+VN ++L V E +W GG IAGLV+R + +P+ ++ +MT+++
Sbjct: 606 NALGATPWKVNTKILEVAEELWRRGGGIAGLVNRERIDVPKINFNDFRLLPRNEMTQIRG 665
Query: 547 WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
+R+AKK ERH+ C TE+ L AR + FY PHN+DFRGRAYP+ L+H+
Sbjct: 666 ---EIREAKKAVAERHALTCQTEIILQEAREFAKYDVFYLPHNMDFRGRAYPIPSTLHHM 722
Query: 607 SSDVCRGVLEFAE-GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SSD+ RG+L FA G+PLG+ G+ WLK+H+ANL G +K + + R+ + ENH EI
Sbjct: 723 SSDLHRGLLMFASPGKPLGERGVYWLKVHIANL--AGQDKATFEDRVRWTENHSLEIIQV 780
Query: 666 AENPI--NGSRWWLTAEDPFQCLAACINLSEALKSSSPHS-VISHLPIHQDGSCNGLQHY 722
A++P+ N WW T EDPFQ LAAC+ + A + S S +PI DGSCNGLQHY
Sbjct: 781 AQDPLDPNNLEWWSTREDPFQFLAACVEFANAASQGNSMSHYCSSVPIQMDGSCNGLQHY 840
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AAL R+ A VNL+ +KP DVYS + RV ++++D+ + + AK+ + +
Sbjct: 841 AALARDCEGAFKVNLLPCDKPQDVYSAVCDRVRVMVEKDAERGLEE------AKLALKCL 894
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
RK+VKQTVMTSVYGVT +GAR QI+ RL E + + +F + Y A
Sbjct: 895 SRKVVKQTVMTSVYGVTLIGARLQIENRLRE-AKLIEKEWIFKVSSYLA 942
>gi|317035455|ref|XP_001397108.2| DNA-dependent RNA polymerase family protein [Aspergillus niger CBS
513.88]
Length = 1640
Score = 348 bits (892), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 232/694 (33%), Positives = 365/694 (52%), Gaps = 57/694 (8%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY E + R +NL R++Q++ + W + +D K L EKRL
Sbjct: 612 EYAEAESRDMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 664
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 665 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 724
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 725 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLRA-VKQTLS---- 779
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 780 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 836
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 837 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 889
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 890 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 949
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 950 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 1009
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 1010 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 1068
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 1069 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 1126
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 1127 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 1186
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 1187 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 1240
Query: 801 VGAREQIKRRL-EEKGHITDDRQLFAAACYAAKV 833
+GA +Q++++L + +T D++ A A KV
Sbjct: 1241 MGAMKQVRKQLIDHYPELTQDQKHQGAIYIARKV 1274
>gi|145499932|ref|XP_001435950.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403087|emb|CAK68553.1| unnamed protein product [Paramecium tetraurelia]
Length = 1035
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 242/710 (34%), Positives = 372/710 (52%), Gaps = 89/710 (12%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
L RQ+ E + E +D ++++ + + A +L + + WF L +++EQ
Sbjct: 181 LFERQLIIEQVSNELALDRFQQVFDDLQKMSKAQHLFAAQKYIVEWFPKLCALVQQEQIQ 240
Query: 237 -MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG----HEDR----CVQ--VVQA 285
K++ Y +I + ++K+A+I + ++M + HE++ C Q V +
Sbjct: 241 CFSDPNKEQQGYHQYITAIQSEKLAIIALSELMKEFIEAAVLFHEEKTTLNCYQIRVTRL 300
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRK------KIIAD-------TEEVLSKEKELLRKR 332
A IG EQ ++ H + E+ KN +RK K+I + +EE + +KEL K+
Sbjct: 301 ANRIG---EQIMKQHLYEEEQKNLRRKSKEDIQKMIEEGTVPQDQSEEEIQNQKELFYKQ 357
Query: 333 VNSLIKSKRVMEAQKLLKNEETK-------------PWG----RDTQAKLGSRLVELLIE 375
V++A KLLK ++ K +G +D A++G LV L++
Sbjct: 358 A--------VVKAGKLLKTQQEKLRERIRNNRVYLAKYGQAMPKDIAAQIGMVLVHFLVD 409
Query: 376 TAYVQH------PVNPADYSP--PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
+ ++ PV Y D+ A + + L H K D
Sbjct: 410 SIKFRNENNFWVPVLVQGYKKVKQDIEVAIFNVNQLFLHHLSAGMHK-------DNSYFM 462
Query: 428 GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMK 487
LDR+ +PM+ PP KW GGY P+ ++R Q+EA K ++
Sbjct: 463 HLDRA--------LPMIYPPAKWMDTQIGGYYLKPTNLIRIQDQSLQEEAAKRAN---LQ 511
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR--NDVLIPEKPLSEDMTEVQ 545
+++ LD + WRVN +VL++ +W GG IA + R + + E + E + +
Sbjct: 512 NLYDILDNISKVAWRVNNKVLNIAMQVWEQGGGIAEVPKRQHDKTYVFEHQIKECKSYEE 571
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
K++ + K + ++ +S +CD LKL VA + Y+PHN+DFRGR YP+ PHLNH
Sbjct: 572 KYQ--LLKMIQSQRDLYSLQCDFTLKLGVALAFNGCQKIYFPHNMDFRGRLYPIPPHLNH 629
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+ D+ RG+LEF+EG+ LGKSGLRWLKIHLAN G +KLS + R A+V+ ++ I
Sbjct: 630 MGPDIARGLLEFSEGKKLGKSGLRWLKIHLAN--KMGKDKLSMEDREAYVDQNVDSIIKC 687
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
AE+PI W ED +Q LAA + A+KS +P SHL +HQDGSCNGLQHYAAL
Sbjct: 688 AEDPIKYQD-WAQLEDAWQSLAAMFDYVAAIKSPNPEEYESHLHVHQDGSCNGLQHYAAL 746
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
GR+ A VNL KP DVY+ +A V ++ D+ SK ++A L +Q+ RK
Sbjct: 747 GRDVEGATQVNLANTSKPGDVYTHVAGMVERRVEFDAKDSLSK--DHIIALKLQNQIKRK 804
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAACYAAKVS 834
+VKQTVMTSVYGVTF+GAREQI R+L++KG I +D L + A+ Y A+++
Sbjct: 805 IVKQTVMTSVYGVTFIGAREQIHRQLKDKGIIGEDEHLQYQASIYLARIT 854
>gi|296424611|ref|XP_002841841.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638090|emb|CAZ86032.1| unnamed protein product [Tuber melanosporum]
Length = 1416
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 225/684 (32%), Positives = 364/684 (53%), Gaps = 67/684 (9%)
Query: 162 IKLQEYR-EMKKRKFNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
+ QEY + ++F + R++ +++ A ER +++ L + + K+ A I
Sbjct: 337 MPFQEYDINLNDKEFQIERQKLLEEHAFDSARERWKRDFESLSERGVIKQDA----EINS 392
Query: 219 LFLGWFGPL----SEAIEREQKMQRTKKQKAA------YAPHIELLPADKVAVIVMHKMM 268
L W L E ++R Q + + + A Y P + ++ +K+A I + +++
Sbjct: 393 LLWEWHQALVPLIHEELKRVQHAEESGTKAAGAVDRCFYGPFMRVIEPEKLAAITIIELL 452
Query: 269 GLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL 328
++ +A + +G +E E + ++ + E + +++
Sbjct: 453 RTHTLNGVGAGLKASRAVLQLGREVELEYQAQEVAKQRGEGFFANMSKAELETIFRDRSA 512
Query: 329 LRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
R N + KSK + L EE W + KLG L+ +LI A + P +
Sbjct: 513 FR---NLISKSKSASD----LDFEEIPEWPNTVKVKLGGVLISMLIHVARI-----PVEA 560
Query: 389 SPPDVR-------------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE--GLDRSA 433
+ P + PAF+H ++ + ++ GVV+ P +++ G D
Sbjct: 561 AVPGLTEGTESSEKIVQHLPAFQHCYE-------YQRGRKLGVVKLHPELVKRLGTDDLN 613
Query: 434 KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEA 492
+ +PM+V P W +++GGY + S V+R S +Q++ +K+ + +F
Sbjct: 614 FTAIGKSLPMVVRPLPWTDWDEGGYFYTRSKVVRIRESVEQRQYVKAAAERGHLDHLFAG 673
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSV 551
LD LG T WR+N++V V+ +W A + N D+ P +P +V +W+W+
Sbjct: 674 LDVLGRTAWRINRRVFDVVLEVWNQEKAFAKIPALNPDINFPLEPEPNADPKV-RWEWA- 731
Query: 552 RKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
R+ K++N R HS RCD K+ +AR EE FY+PHN+DFRGRAYP+ P+LNH+ +
Sbjct: 732 REMKRVNTARKNNHSTRCDVNFKVEIARAFLFEE-FYFPHNIDFRGRAYPIPPNLNHIGN 790
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ RG+L F+E + +G++GLRW+KIHLANL G +K S R+AF E ++ I DSAEN
Sbjct: 791 DLSRGLLMFSEAKEVGETGLRWMKIHLANL--AGYDKASFSQRVAFTEENIENIHDSAEN 848
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P+ G+RWWL ++DP+Q LA+C L+EAL ++PH H+P+ QDG+CNGLQHYAALG +
Sbjct: 849 PLTGNRWWLKSDDPWQLLASCFALNEALSLNNPHEYKCHIPVAQDGTCNGLQHYAALGGD 908
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL + P DVY+ +A E++K D + A +A L D V RK+VK
Sbjct: 909 VAGARQVNLEPSDLPQDVYTGVA----ELVKASVELDAKRGLPAAVA--LKDLVTRKVVK 962
Query: 789 QTVMTSVYGVTFVGAREQIKRRLE 812
QTVMT+VYGVTF+GAR QI+ +L+
Sbjct: 963 QTVMTNVYGVTFIGARNQIENQLK 986
>gi|358373876|dbj|GAA90472.1| mitochondrial DNA-directed RNA polymerase [Aspergillus kawachii IFO
4308]
Length = 1367
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 225/671 (33%), Positives = 356/671 (53%), Gaps = 56/671 (8%)
Query: 166 EYREMKKRK-FNLLRRRQVKQET-----EAW-ERMVDEYKE-LEAKMIEKRLAPNLPHIK 217
EY + + R+ +NL R++Q++ + W + +D K L EKRL
Sbjct: 339 EYTDAESREMYNLSRQKQLEANSIQAALNRWRQETIDRQKAGLNTTGSEKRLG------- 391
Query: 218 GLFLGWFGPLSEAIEREQKM--------QRT--KKQKAAYAPHIELLPADKVAVIVMHKM 267
+ W L IE E K+ RT ++ Y + + +DK+A + + +
Sbjct: 392 SIINQWHTDLVSRIEAELKLVEQSEAKPPRTLEDTERCEYGVFLRCVDSDKLAALTILSV 451
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE 327
+ G D +++ A IG + E L+K ++ A ++ LS
Sbjct: 452 LSSFGRGGMDSGLKLASIATGIGSELHDEFLAELTLKKESAADAARLKA-VKQTLS---- 506
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
LRK+ + K ++ + L +++ W +AK+G+ L+ L E A ++ +
Sbjct: 507 -LRKQKDGRAKWHTIV--RNLEQDDPAVAWSARVKAKVGAALMSFLFEVAKAPVKIDNPE 563
Query: 388 YSPPDV--RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPML 444
P++ +PAF+H ++ +R G + P +++ + + +L ++PML
Sbjct: 564 TKKPEISMQPAFQHAYQI-------NWGRRAGFIHLHPEIVKIVTKEPTSDLLGRHLPML 616
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWR 502
P+ WKG + GGY S ++RT Q A ++ N ++++ + LD LG+T W
Sbjct: 617 SKPRPWKGVSDGGYHVYKSNLIRTTPGETLQPAYVKAALENNGLEQIRQGLDILGNTGWV 676
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQK-WKWSVRKAKKINQE 560
+N+ V V+ W SG +A L L KP E+ E +K W +R+ +
Sbjct: 677 INEDVFKVMLEAWNSGEPVADLAPLEPELPHPPKPSPEEGYEAEKKWDNDMREIENRRAG 736
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HSQRC ++ VAR ++E FY PHNLDFRGRAYP+ P+LN + +D RG+L F++
Sbjct: 737 FHSQRCFQNFQMEVARAYRNET-FYLPHNLDFRGRAYPLPPYLNQMGADNARGLLLFSQA 795
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+PLG+SGLRWLK+ +ANL G +K S R F +HL ++ DSA N ++G RWWL A+
Sbjct: 796 KPLGESGLRWLKVQIANL--SGFDKASLSEREKFTMDHLDDVLDSANNGLHGRRWWLKAD 853
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DP+QCLAAC L AL+ P S LP+HQDGSCNGLQHYAALG + + A VNL
Sbjct: 854 DPWQCLAACCELRNALQHPDPTQFASRLPVHQDGSCNGLQHYAALGGDKIGAQQVNLEPS 913
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
++P+DVY+ +A V E + R++ + S +AK L ++ RK+VKQTVMT+VYGVTF
Sbjct: 914 DRPSDVYTGVAEFVKEAVAREAAQGHS------VAKYLDGKITRKVVKQTVMTNVYGVTF 967
Query: 801 VGAREQIKRRL 811
+GA +Q++++L
Sbjct: 968 MGAMKQVRKQL 978
>gi|406603686|emb|CCH44839.1| DNA-directed RNA polymerase, mitochondrial [Wickerhamomyces ciferrii]
Length = 1332
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 246/731 (33%), Positives = 383/731 (52%), Gaps = 77/731 (10%)
Query: 136 LEPRRRIFVQDPPWFSSIFLKGLYKRIKL--QEYREMKKRKFNL-----LRRRQVKQETE 188
LE + F D ++ F +YK + L ++ E +FN+ L + ++ E
Sbjct: 320 LEEKLEFFTNDSETQANFF--EVYKSLPLDKRDLFEEALNEFNVERQTALENKSIEAAQE 377
Query: 189 AWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFG---PL-SEAIEREQKMQ----RT 240
W+ +E K+ + K L L GWF PL + IER + + +T
Sbjct: 378 KWKHEYEEIKKRGDLGMSKSLNARL-------WGWFEQMMPLVRDEIERCKNVDDIQIKT 430
Query: 241 KKQKA--------AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
K +A YAP++ LL KV VI + +M+ G ++ +A + + A
Sbjct: 431 LKNEAFAQHSERKKYAPYLRLLDPKKVTVITILEMLKNNSTGGISEGMRTARAVLSVSKA 490
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR-VMEAQKLLKN 351
+E E R L KN+ + D + LS K L +K SL K V+ K+
Sbjct: 491 LELEFRSEQILNTEKNFVKN---FDNSK-LSNPKNL-KKYSMSLSNFKNDVISDMKVY-- 543
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV----RPAFRHRFKTILKH 407
W +D + K+GS L+ +L+ A V+ V+ D S + PAF H F+ H
Sbjct: 544 -----WPQDIKVKIGSVLISILMHVAKVE--VSGVDPSTKQLVRGEAPAFYHSFQY---H 593
Query: 408 PGQKTTKRYGVVECDPLVLEGL--DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
G K G+++ ++ L D+ + +PML+ P+ W +N G Y + + +
Sbjct: 594 NGAKI----GILKIHKVLSSQLSADKLVGAVQPQSLPMLIQPRPWTSWNNGAYYYSQNQI 649
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
+R S +Q +K+ + + + KV++ L+ LG+T W VN++V V+ IW +G +
Sbjct: 650 IRLRDSPEQLAYIKA-SSDKLDKVYDGLNVLGNTAWTVNERVFKVMSKIWNTGDEFLDIP 708
Query: 526 DRNDVL-IPE-KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
++ L +PE P S D + + +WK V+ + S RCD KL +AR E+
Sbjct: 709 KAHESLELPEVPPRSSDPSVLNEWKIKVKALQDKYATDRSTRCDANYKLEIARAFLGEK- 767
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
FY+PHNLDFRGRAYP+ P+ NH+ SD+ RG+L F +G+ +G+ GLRWLKIHLANLF G+
Sbjct: 768 FYFPHNLDFRGRAYPISPNFNHMGSDLSRGLLLFWKGKEIGEEGLRWLKIHLANLF--GI 825
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K + R AFV +++ + +AE+P+ WW A+ P+Q LA I+L++ALK P
Sbjct: 826 DKAPLNEREAFVNDNIELVKRAAEDPMANQEWWTKADKPWQALATIIDLADALKLPDPTK 885
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH-EIMKRDS 762
ISH P+HQDG+CNGLQHYAALG + A VNL +KP DVY+ +A V ++ + +
Sbjct: 886 HISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLAPSDKPQDVYTHVAKLVRAKLEEAAA 945
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
N D + A++L D + RK+VKQTVMT+VYGVT VGA QI ++L+ ++ + Q
Sbjct: 946 NGDEN-------ARMLKDNIKRKVVKQTVMTNVYGVTQVGATNQIHKQLQ---NVFSEDQ 995
Query: 823 LFAAACYAAKV 833
+ + Y KV
Sbjct: 996 SYKLSVYLTKV 1006
>gi|384250319|gb|EIE23799.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 591
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 182/419 (43%), Positives = 253/419 (60%), Gaps = 37/419 (8%)
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTH----GSRKQQEALKSVTGNCMKKVFEALDTLGS 498
ML+PP W+ ++ GG+L + +MR H G + E + T + +V++AL+ +G
Sbjct: 1 MLIPPLPWRSHDSGGHLIMRGSIMRVHTYPKGVSRAIETAQERTPYGLSRVYDALNAVGE 60
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGL----VDRN-------------------DVLIPEK 535
W +NK +L+V+E W + I GL VD+ +L+ +
Sbjct: 61 VPWAINKPMLAVVERAWAAQLPICGLPVKYVDQKPQPKSTAKRFRTHHHRHQLQLLLTSQ 120
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+ T+ K R K +E HS RCD LKL VA KDE FY+PHNLDFRGR
Sbjct: 121 ETGAERTKRMK---GNRLLNKRIRETHSLRCDLNLKLGVANEFKDELRFYFPHNLDFRGR 177
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
AYP+HPHLNH+ DVCRG+L FAE RPLG G+ WL + +AN + ++K+ +GR F
Sbjct: 178 AYPLHPHLNHMGPDVCRGLLTFAEARPLGPDGIGWLYVLIANSWGKSIDKMDFEGRRQFA 237
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
+ +L + DSAE P++G RWW E P+Q LAAC+ + +AL S +P + +S LP+ DGS
Sbjct: 238 QRNLEAVLDSAERPLDGHRWWTKGEKPWQLLAACMEVRDALASGNPAAYLSRLPVQIDGS 297
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALGR+ +AVNL P DVY EIAV V++++ D+ K P+AL
Sbjct: 298 CNGLQHYAALGRDKAGGSAVNLRPAPAPQDVYGEIAVEVNKMVAADAEKGV---PEAL-- 352
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
L ++RKLVKQTVMTSVYGVT+VGAR+QI+ RL E+G +D QL+ A YAA+++
Sbjct: 353 -ALQGHINRKLVKQTVMTSVYGVTYVGARQQIQNRLLERGWSNND-QLYRCASYAARLT 409
>gi|402076916|gb|EJT72265.1| hypothetical protein GGTG_09131 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1501
Score = 346 bits (887), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 281/465 (60%), Gaps = 27/465 (5%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
W + ++G+ L++ +I+TA + +HP + S + +PAF H + K
Sbjct: 605 WPVGIKYQVGAALLQAIIQTATITVVKEHPETGSLVS--ESQPAFVHNQQ-------YKR 655
Query: 413 TKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
K+ GV+ + ++E L R + L ++PM+ P+ W +++GG++ P+ ++R
Sbjct: 656 GKKVGVLVVNKTLVEMLKREPRADFLARHLPMVCEPEPWTRFDRGGFIESPAQMVRVKPG 715
Query: 472 RKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN- 528
+ Q+ A ++ M+++ + LD+LG T W++NK V V+ +W SG +A + +
Sbjct: 716 ERDQKIYAEAAIENGHMEQIMKGLDSLGKTAWKINKNVFGVMLDVWNSGEALANIPPLDP 775
Query: 529 DVLIPEKPL-SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
+ +PE+P+ +ED +KW +V+ A+ + H RC +L +AR ++D+ Y+P
Sbjct: 776 KIPVPEEPVATEDPVARRKWLNAVKMAENLKSSLHGVRCFMNFQLEIARAVRDQT-IYFP 834
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYP+ + NH+ +D RG++ FA+G+ LG+ G RWLK+HLAN+F G +K S
Sbjct: 835 HNVDFRGRAYPLPTYFNHMGADHVRGLMLFAKGKELGEEGFRWLKVHLANVF--GFDKAS 892
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R F +L I DSA NP+ G RWWL EDP+QCLA C L A +S ISH
Sbjct: 893 LREREKFAMENLENIMDSATNPLTGRRWWLKGEDPWQCLATCYELKAAFESPDATKFISH 952
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+HQDG+CNGLQHYAALG + A VNL GE+PADVYS +A V E + RD+
Sbjct: 953 LPVHQDGTCNGLQHYAALGGDEWGARQVNLEPGERPADVYSAVADLVSEDLARDAEAG-- 1010
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+AK L ++ RK+VKQTVMT+VYGVTF GA++Q++++L+
Sbjct: 1011 ----NFMAKALNGKIKRKVVKQTVMTNVYGVTFAGAKKQVQKQLD 1051
>gi|398392013|ref|XP_003849466.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
gi|339469343|gb|EGP84442.1| hypothetical protein MYCGRDRAFT_47599 [Zymoseptoria tritici IPO323]
Length = 1299
Score = 346 bits (887), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 229/670 (34%), Positives = 349/670 (52%), Gaps = 54/670 (8%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--PHIKGLFLGWFGPLSEAI 231
K N +RQ+ E + E V+ +K+ + ++ +K ++ + + + W L A+
Sbjct: 244 KENRAAQRQIALERTSVEVAVERWKKADEELRKKGISTAMQTKDMSSMMWQWHQQLLPAL 303
Query: 232 EREQKMQRTKKQKA---------AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC--- 279
+ Q+++ +K+ A Y P +ELLP + +A + M + G +D
Sbjct: 304 K--QELEEVQKEMADPGREHDRHLYGPFLELLPLEHIAATTIMVAMSSIAHGKKDTSGQY 361
Query: 280 ---VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSL 336
V++ +G IE + + +++ +K A + + L +
Sbjct: 362 ETDVKLSHLVSALGNTIESDCKAEKAGSQSRRGAKKARSAGRLKKSAANPALEAPDADKT 421
Query: 337 IKSK---RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYS 389
SK + ++LL E W + KLG+ L+ L+ETA + +HP
Sbjct: 422 SASKGKPKKPSNKELLAELE---WSNPVKFKLGAMLISKLVETAKLACRREHPRTKEMIE 478
Query: 390 PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP-YVPMLVPPK 448
++PA H+ K I KR G + + +++ L LI +PM+V PK
Sbjct: 479 --QMQPALLHQMKWI-------RGKRQGTIAPNVELVKKLSSEPIPALIAKRMPMVVRPK 529
Query: 449 KWKGYNKGGYLFLPSYVMRTHGSRKQQE-----ALKSVTGNCMKKVFEALDTLGSTKWRV 503
WKG+ GGYL PS ++R KQ + A + G ++ V+ L L S WRV
Sbjct: 530 PWKGWEDGGYLRFPSPILRLPVGDKQGKSYFLAAAERNEGKDLETVYRGLTALSSVPWRV 589
Query: 504 NKQVLSVLESIWVSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
+ V V W SG IA R +P +P S D E +KW + + H
Sbjct: 590 HPGVFKVQLDAWNSGEEIANFAPLRPATDLPPEPESTDFAERRKWLAQCHEIRNKATGLH 649
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
S+RC +L +AR + +E Y+PHNLDFRGRAYP+ P+LNH+ +D RG+L FA+G+
Sbjct: 650 SKRCFQNFQLEIARTIVNET-IYFPHNLDFRGRAYPIPPYLNHMGADNVRGLLVFADGKE 708
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LG+ GLRWLK HLA + G +K S RL F E HL +I+DS NP+ G RWWL A+D
Sbjct: 709 LGEKGLRWLKTHLATV--AGHDKASMQERLDFTEAHLDDIYDSVRNPLTGRRWWLEADDA 766
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
+Q LAAC L+ AL S P +SHLP+ QDG+CNGLQHYAALG + AA VNL ++
Sbjct: 767 WQTLAACFELTAALDSPDPTKFVSHLPVQQDGTCNGLQHYAALGGDRAGAAQVNLEPSDR 826
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVY+ +A + +K + +KD ++ L+A++L ++ RK VKQ VMT+VYGVTF G
Sbjct: 827 PADVYTAVA----DAVKAEVDKDAAEG--NLVAQVLQGRLTRKCVKQPVMTNVYGVTFYG 880
Query: 803 AREQIKRRLE 812
A+EQ++++LE
Sbjct: 881 AKEQVRKQLE 890
>gi|212530466|ref|XP_002145390.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
gi|210074788|gb|EEA28875.1| mitochondrial DNA-directed RNA polymerase, putative [Talaromyces
marneffei ATCC 18224]
Length = 1378
Score = 345 bits (885), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 210/580 (36%), Positives = 326/580 (56%), Gaps = 45/580 (7%)
Query: 247 YAPHIELLPADKVAVI-VMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK 305
YA + LLP D +A I VMH + AG E + ++V +G ++ E S + K
Sbjct: 419 YADFLRLLPPDTLAAITVMHIIQLFARAGVE-KGLKVPTIMTSLGQEVQNEFIAQSMIAK 477
Query: 306 T-KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP--WGRDTQ 362
+ ++ + +K I E RK+ IK K+++ K + W D
Sbjct: 478 SERDSRHQKFIKQVVEN--------RKKKAGRIKFKKLLTEMKCDSRQIDSELNWPIDVH 529
Query: 363 AKLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPGQKTTKR 415
AK+G L+ LL + A + PV D P+ + PAF+H ++ ++
Sbjct: 530 AKVGGALLSLLFDCA--KTPVVQED---PETKKRITIMEPAFQHSYEI-------NRGRK 577
Query: 416 YGVVECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRK 473
+G++ P V L R A + + ++PML P+ W G++KGG+L S ++RT G
Sbjct: 578 FGLLHAHPEVTRRLIREAPNAVHARHMPMLSEPQPWTGFDKGGFLAQRSSIIRTTPGDTL 637
Query: 474 QQEALK-SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVL 531
QQ +K ++ + + +V LD LG T W +N V V+ W +G + + +
Sbjct: 638 QQSYMKKALEKDGLPEVRAGLDILGKTAWTINNDVFDVMLEAWNTGEAFPKIPPLDPKIP 697
Query: 532 IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+PEKP +D+ ++ + +R+A+ + HSQRC ++ +AR K++ FY PHN+D
Sbjct: 698 MPEKPADDDIEAMKVYNNKLREAENLRSGLHSQRCFINFQMEIARAYKNQT-FYLPHNMD 756
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ +LN +S+D R +L F +G+ LG++GLRWLKIHL+N++ G +K S R
Sbjct: 757 FRGRAYPLPAYLNQMSADNARSLLLFKKGKALGEAGLRWLKIHLSNVY--GFDKASLQER 814
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F HL ++ DSA ++G +W++ AEDP+QCLAAC L AL+ SP +S LP+H
Sbjct: 815 EEFTMKHLDDVLDSANKGLHGRKWFMEAEDPWQCLAACCELRNALQLESPAEYMSRLPVH 874
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG + A VNL G++P D+Y+ ++ V E + RD+ + H
Sbjct: 875 QDGSCNGLQHYAALGGDMEGAQHVNLEPGDRPKDIYTGVSDYVTEKVARDA---AAGHE- 930
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+AK+L ++ RK+VKQTVMT+VYGVTFVGA Q++R++
Sbjct: 931 --IAKLLEGKIKRKIVKQTVMTNVYGVTFVGAIRQVRRQI 968
>gi|408395694|gb|EKJ74870.1| hypothetical protein FPSE_04906 [Fusarium pseudograminearum CS3096]
Length = 1353
Score = 345 bits (884), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 212/596 (35%), Positives = 324/596 (54%), Gaps = 46/596 (7%)
Query: 232 EREQKMQRTKK--QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E+ +T++ ++ Y P + L ++A + + ++ D+ V + + +
Sbjct: 392 ESEESENKTEEDLERCIYGPILRLGDPTRLAAVTILTLLNTSAIQGVDKGVVIQRLLNDV 451
Query: 290 GMAIEQEIR--IHSFLEKTKNYKRK-KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+ +IR I E K +RK K D E + E+ K + +A
Sbjct: 452 SRVAQDDIRTQIQENAELEKRRRRKVKFTGDNAETQATEE-------------KTITDAD 498
Query: 347 K--LLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ L KN W +A++GS L++ LIETA V +HP++ S V+PAF H
Sbjct: 499 EPVLSKNPAMGLWSVQVRARVGSILIKSLIETAKVKVVREHPISKERIS--QVQPAFSH- 555
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
H +K K+ G++ + ++E L R L ++PM+ P+ W+ N+GG+L
Sbjct: 556 -----MHAPRKG-KKVGMLFINADLVERLKREPMGDFLAKHLPMVSEPQPWRRINEGGFL 609
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R +Q ++ M +VF+ LD LG T WR+N VL V+ W S
Sbjct: 610 SSKATLVRLKTGDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNS 669
Query: 518 GGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
G IA + +++ P +P D + W +V+ + HSQRC L+L +AR
Sbjct: 670 GDAIANMPTLTPNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIAR 729
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ ++ Y+PHN+D+RGRAYP+ +LNH+ +D R +L FA G+ LG+ GLRWLKIHLA
Sbjct: 730 AFR-KQVIYFPHNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLA 788
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NL+ G +K S R AF +L I +S NP+ GSRWWL AEDP+QCLAAC L A
Sbjct: 789 NLY--GYDKASFSEREAFATENLPNIVESVANPLGGSRWWLKAEDPWQCLAACFELKAAH 846
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
P +S LP+HQDG+CNGLQHYAALG +T A VNL+ G++PADVY +A V E
Sbjct: 847 DLEDPTKYVSSLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGDRPADVYMAVANLVKE 906
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ +++ K L + + ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 907 SIAKEAEKGNQ------LGQNCMGKITRKVVKQTVMTNVYGVTFSGAKQQVCKQLD 956
>gi|46121275|ref|XP_385192.1| hypothetical protein FG05016.1 [Gibberella zeae PH-1]
Length = 1357
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 212/596 (35%), Positives = 324/596 (54%), Gaps = 46/596 (7%)
Query: 232 EREQKMQRTKK--QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E+ +T++ ++ Y P + L ++A + + ++ D+ V + + +
Sbjct: 392 ESEESENKTEEDLERCIYGPILRLGDPTRLAAVTILTLLNTSAIQGVDKGVVIQRLLNDV 451
Query: 290 GMAIEQEIR--IHSFLEKTKNYKRK-KIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
+ +IR I E K +RK K D E + E+ K + +A
Sbjct: 452 SRVAQDDIRTQIQENAELEKRRRRKVKFTGDNAETQATEE-------------KTITDAD 498
Query: 347 K--LLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ L KN W +A++GS LV+ LIETA V +HP++ S ++PAF H
Sbjct: 499 EPVLSKNPAMGLWSVQVRARVGSILVKSLIETAKVKVVREHPISKERIS--QIQPAFSH- 555
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
H +K K+ G++ + ++E L R L ++PM+ P+ W+ N+GG+L
Sbjct: 556 -----MHAPRKG-KKVGMLFINADLVERLKREPMGDFLAKHLPMVSEPQPWRRINEGGFL 609
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ ++R +Q ++ M +VF+ LD LG T WR+N VL V+ W S
Sbjct: 610 SSKATLVRLKTGDVEQRLYTKAAIKRGDMDQVFKGLDVLGKTPWRINNNVLDVMVEAWNS 669
Query: 518 GGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
G IA + +++ P +P D + W +V+ + HSQRC L+L +AR
Sbjct: 670 GDAIANMPTLTPNLVTPAEPTGSDPLLRRAWYRNVKAVENERAALHSQRCYMNLQLEIAR 729
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ ++ Y+PHN+D+RGRAYP+ +LNH+ +D R +L FA G+ LG+ GLRWLKIHLA
Sbjct: 730 AFR-KQVIYFPHNMDYRGRAYPLPTYLNHMGADHTRALLRFANGKELGEKGLRWLKIHLA 788
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NL+ G +K S R AF +L I +S NP+ GSRWWL AEDP+QCLAAC L A
Sbjct: 789 NLY--GYDKASFTEREAFATENLPNIVESVTNPLGGSRWWLKAEDPWQCLAACFELKAAH 846
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
P +S LP+HQDG+CNGLQHYAALG +T A VNL+ G++PADVY +A V E
Sbjct: 847 DLEDPTKYVSSLPVHQDGTCNGLQHYAALGGDTWGAQQVNLMPGDRPADVYMAVANLVKE 906
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ +++ K L + + ++ RK+VKQTVMT+VYGVTF GA++Q+ ++L+
Sbjct: 907 SIAKEAEKGNQ------LGQNCMGKITRKVVKQTVMTNVYGVTFSGAKQQVCKQLD 956
>gi|219127811|ref|XP_002184121.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404352|gb|EEC44299.1| rpot-like RNA polymerase [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1188
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 247/774 (31%), Positives = 379/774 (48%), Gaps = 142/774 (18%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
L Q+ E EA + + Y+ + ++ +L ++ L W+ PL IE QK
Sbjct: 260 LEELQLWLECEAQQESITRYQHVIDSARTRKDYASLSLVQRHVLQWYQPLKHEIESLQKA 319
Query: 237 ----------MQRTKKQKAAYAPHIELLPADKVAVIVMHK--MMGLVMAGHEDRCVQVVQ 284
+ TK+ Y P I LP +K+AVI H+ M GL G + R
Sbjct: 320 YIFKEQDPEGVVLTKRAANVYGPFICSLPPEKLAVICAHEAIMSGLSNPGVDGRDGTAFT 379
Query: 285 A-AVHIGMAI---------------------------------EQEI---------RIHS 301
A A IG A+ E+E+ +I
Sbjct: 380 AVARRIGDAVEQEVVIQRMLHRRFKESQARHSTQDPNRILPKPEEEVEGDVELSTDKIDE 439
Query: 302 FLEKTKNYKRKKIIADTEEV----------------LSKEKELLRKRVNSLIKSKRVMEA 345
+ R K TE+V +S K ++KR L+ + A
Sbjct: 440 DMNDGNATTRSKSSTGTEDVHKWAYAASHLKNYLDEISYRKPSVKKR---LVIEYAIRRA 496
Query: 346 QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
+ +L+N+E W + +LG+ L ++L+ A V+ AF + I
Sbjct: 497 RTILENDEA--WTESQKIQLGAVLFQVLLNKANVRIDGKQ--------EKAFTYEKFWIS 546
Query: 406 KHPGQKTT----KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
K Q + + ++ D L G + + PM+VPPK W ++GGY L
Sbjct: 547 KQKVQSIVSMNDRLHKMLVSDKLQSFGTTTTRQK------PMIVPPKPWSRPDEGGYKML 600
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
+ ++R HG Q+E L++V + VF+ L+ LG WR+N++VL+V + W + +
Sbjct: 601 RTELLRYHGCNMQKEVLQNVD---LSIVFDGLNALGRVPWRINQRVLTVAQRCWDNNIPL 657
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWK-------------------WS-VRKAKKINQER 561
+ ++D +PE+PL E Q W+ W+ R+ K+ N +
Sbjct: 658 GDIPSKDDNPLPEEPLHPKRQE-QFWEPETPGYESYVEEYRLYRESWNKFRRVKQRNMDL 716
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
S RC LKL A + K+ E ++P+N+DFRGRAYP+ PHL+++ SD+CRGVL+FAE +
Sbjct: 717 RSLRCSAMLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEAK 776
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLG GL WLK+HLAN G +K+S D R+ FV+++L ++ SAE+P G RWW++ ED
Sbjct: 777 PLGPRGLYWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLED 834
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQ LA C+ + +A+ +P S + LP+H DGSCNGLQHYAALGR+++ AVNL A +
Sbjct: 835 PFQGLATCLEIIDAIDCGNPESFLCSLPVHMDGSCNGLQHYAALGRDSVGGKAVNLCAYD 894
Query: 742 KPADVY----SEIAVRVHEIMKRDSNKDPS-------KHPQAL----LAKILIDQVDRKL 786
+P DVY E+ RV +R + D S K + L AK++ +DR +
Sbjct: 895 EPQDVYVGVMHEVVRRVAAEAERQLDFDTSDLESLSRKQKKELSYNRAAKLVNGLIDRGV 954
Query: 787 VKQTVMTSVYGVTFVGAREQIKR----RLEEKGHITDD--RQLFAAACYAAKVS 834
VK+TVMTSVYGVT++GAR+QI+ +LE +GH D+ ++F A Y A ++
Sbjct: 955 VKRTVMTSVYGVTYIGARQQIQEKIISKLEAQGHDVDEMSNEIFQACGYVASLT 1008
>gi|190348218|gb|EDK40635.2| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC
6260]
Length = 1303
Score = 343 bits (879), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 231/696 (33%), Positives = 352/696 (50%), Gaps = 84/696 (12%)
Query: 157 GLYKRIKLQEYREMKKRKFNLL---RRRQ-----VKQETEAWERMVDEYKELEAKMIEKR 208
+Y+ +K E R+ +L R+RQ V E W+ +E ++ A I K
Sbjct: 342 AVYRSLKSDEQRQKFNEALDLFNESRQRQLELRGVDGAREKWKHEYEEMQKRGAFAIHKN 401
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQR------------------TKKQKAAYAPH 250
L L W+ + +E+E K+ R K+++ YAP+
Sbjct: 402 LNVQL-------FKWYSDMLPYVEKEAKICRKIVAGELDVKDCKPEEAAQMKERSYYAPY 454
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ L+P K+AVI + +++ L G ++ +A + +G A+E E + + +E
Sbjct: 455 MILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA----- 509
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE---TKPWGRDTQAKLGS 367
E+ L K++ + + K+++ +K E T W AK+GS
Sbjct: 510 --------------ERRSLSKKLKTTNQWKKILRTRKDYSKENPNATNEWDYPIYAKVGS 555
Query: 368 RLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
L LL+ A V PV ++PAF H ++ + GQ R GV++
Sbjct: 556 VLTSLLMHVAKVSVKGTDPVTGKQVKT--MQPAFHHTYQFL---QGQ----RLGVLKVHK 606
Query: 424 LVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
++ L +A + +PMLVPP+ W YN GGYLF + ++R S + LK+
Sbjct: 607 SLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRIKDSAETNAYLKAA 666
Query: 482 T--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
+ GN + +V+E L+ LG T W +N +V V+ W SG + + L P
Sbjct: 667 SDMGN-LDQVYEGLNVLGETCWTINHEVFDVISHYWNSGEKFLDIPSIVEELDIPPPPPI 725
Query: 540 DMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
D +QK + R + +N SQRCDT +L +AR E+ Y+ HN+DFRGRAY
Sbjct: 726 DADPLQKTDYQRRLRQLMNDAASARSQRCDTNYRLEIARAFLGEK-LYFSHNVDFRGRAY 784
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PH NHL +D+ R + F +G+ +G GL W+KIHLANL+ G+ K R+ FV++
Sbjct: 785 PLSPHFNHLGNDMTRSLFLFWDGKKVGARGLEWIKIHLANLY--GINKAPLHERVQFVDD 842
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+L+ I +SA+NP+ WW AE P+Q L C L A P ISHLPIHQDG+CN
Sbjct: 843 NLHHIIESAKNPLAEDAWWKKAEKPWQVLGVCFELKRAYDLEDPTEHISHLPIHQDGTCN 902
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
GLQHYAALG + A VNL+ ++P DVYS +A V KR + + + AL
Sbjct: 903 GLQHYAALGGDFEGARQVNLIPADRPQDVYSFVASLVQ---KRVDAEAEAGNEYALF--- 956
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
L D++ RK+VKQTVMT+VYGVTFVGA QI++++++
Sbjct: 957 LRDKITRKVVKQTVMTNVYGVTFVGAVAQIQKQIDQ 992
>gi|146413615|ref|XP_001482778.1| hypothetical protein PGUG_04733 [Meyerozyma guilliermondii ATCC
6260]
Length = 1303
Score = 342 bits (878), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 231/696 (33%), Positives = 352/696 (50%), Gaps = 84/696 (12%)
Query: 157 GLYKRIKLQEYREMKKRKFNLL---RRRQ-----VKQETEAWERMVDEYKELEAKMIEKR 208
+Y+ +K E R+ +L R+RQ V E W+ +E ++ A I K
Sbjct: 342 AVYRSLKSDEQRQKFNEALDLFNESRQRQLELRGVDGAREKWKHEYEEMQKRGAFAIHKN 401
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQR------------------TKKQKAAYAPH 250
L L W+ + +E+E K+ R K+++ YAP+
Sbjct: 402 LNVQL-------FKWYSDMLPYVEKEAKICRKIVAGELDVKDCKPEEAAQMKERSYYAPY 454
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ L+P K+AVI + +++ L G ++ +A + +G A+E E + + +E
Sbjct: 455 MILVPPKKMAVITILELLKLNSTGGIVDGMRTARAVISVGKALELEYKSQNLVEA----- 509
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE---TKPWGRDTQAKLGS 367
E+ L K++ + + K+++ +K E T W AK+GS
Sbjct: 510 --------------ERRSLSKKLKTTNQWKKILRTRKDYSKENPNATNEWDYPIYAKVGS 555
Query: 368 RLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
L LL+ A V PV ++PAF H ++ + GQ R GV++
Sbjct: 556 VLTSLLMHVAKVSVKGTDPVTGKQVKT--MQPAFHHTYQFL---QGQ----RLGVLKVHK 606
Query: 424 LVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
++ L +A + +PMLVPP+ W YN GGYLF + ++R S + LK+
Sbjct: 607 SLIRQLAGNALSNAVQPQLLPMLVPPRPWVAYNDGGYLFSQNNIIRIKDSAETNAYLKAA 666
Query: 482 T--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
+ GN + +V+E L+ LG T W +N +V V+ W SG + + L P
Sbjct: 667 SDMGN-LDQVYEGLNVLGETCWTINHEVFDVISHYWNSGEKFLDIPSIVEELDIPPPPPI 725
Query: 540 DMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
D +QK + R + +N SQRCDT +L +AR E+ Y+ HN+DFRGRAY
Sbjct: 726 DADPLQKTDYQRRLRQLMNDAASARSQRCDTNYRLEIARAFLGEK-LYFSHNVDFRGRAY 784
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ PH NHL +D+ R + F +G+ +G GL W+KIHLANL+ G+ K R+ FV++
Sbjct: 785 PLSPHFNHLGNDMTRSLFLFWDGKKVGARGLEWIKIHLANLY--GINKAPLHERVQFVDD 842
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+L+ I +SA+NP+ WW AE P+Q L C L A P ISHLPIHQDG+CN
Sbjct: 843 NLHHIIESAKNPLAEDAWWKKAEKPWQVLGVCFELKRAYDLEDPTEHISHLPIHQDGTCN 902
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777
GLQHYAALG + A VNL+ ++P DVYS +A V KR + + + AL
Sbjct: 903 GLQHYAALGGDFEGARQVNLIPADRPQDVYSFVASLVQ---KRVDAEAEAGNEYALF--- 956
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
L D++ RK+VKQTVMT+VYGVTFVGA QI++++++
Sbjct: 957 LRDKITRKVVKQTVMTNVYGVTFVGAVAQIQKQIDQ 992
>gi|71002430|ref|XP_755896.1| mitochondrial DNA-directed RNA polymerase [Aspergillus fumigatus
Af293]
gi|66853534|gb|EAL93858.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus Af293]
Length = 1375
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 203/581 (34%), Positives = 324/581 (55%), Gaps = 37/581 (6%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 424 QKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAE 483
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+ L+ +++ A E + ++K+ R + ++L+ QK+ K + T W
Sbjct: 484 AALKNEAGTDSRRLKALKELLAGRKKKGGRAKWHALV--------QKMQKEDATIMWSPR 535
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPAD----YSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
AK+G+ L+ LL E + PV D ++PAF+H ++ +R
Sbjct: 536 VTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAYQITWG-------RRT 586
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQ 474
G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G Q
Sbjct: 587 GYLHLHPAIVQIVAKEPTADLLGRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQ 646
Query: 475 QEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+K+ + N ++ + LD LGST W +N++VL+V+ W SG +A L L
Sbjct: 647 PTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEAVANLAPLEPDLPL 706
Query: 534 EKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+ + ++W VR+ + HS RC ++ +AR ++ FY PHN+D
Sbjct: 707 PPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAYRNVT-FYLPHNMD 765
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F+E +PLG SGLRWLKI +ANL G +K S R
Sbjct: 766 FRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDKASMSER 823
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S LPIH
Sbjct: 824 EQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSRLPIH 883
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK-HP 770
QDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A E +K++ ++ ++ HP
Sbjct: 884 QDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVA----EFVKKEVAREAAQGHP 939
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 940 ---IAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQL 977
>gi|159129951|gb|EDP55065.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
fumigatus A1163]
Length = 1376
Score = 342 bits (876), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 203/581 (34%), Positives = 324/581 (55%), Gaps = 37/581 (6%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 424 QKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAE 483
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+ L+ +++ A E + ++K+ R + ++L+ QK+ K + T W
Sbjct: 484 AALKNEAGTDSRRLKALKELLAGRKKKGGRAKWHALV--------QKMQKEDATIMWSPR 535
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPAD----YSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
AK+G+ L+ LL E + PV D ++PAF+H ++ +R
Sbjct: 536 VTAKIGAVLMSLLFEVG--KAPVTMEDPETKKKTVTMQPAFQHAYQITWG-------RRT 586
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQ 474
G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G Q
Sbjct: 587 GYLHLHPAIVQIVAKEPTADLLGRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQ 646
Query: 475 QEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+K+ + N ++ + LD LGST W +N++VL+V+ W SG +A L L
Sbjct: 647 PTYIKTALENNGLEDIRRGLDNLGSTGWTINREVLNVMLEAWNSGEAVANLAPLEPDLPL 706
Query: 534 EKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+ + ++W VR+ + HS RC ++ +AR ++ FY PHN+D
Sbjct: 707 PPKPAPEAGYHAEKEWDTLVREIENRRSGLHSMRCFQNFQMELARAYRNVT-FYLPHNMD 765
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F+E +PLG SGLRWLKI +ANL G +K S R
Sbjct: 766 FRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDKASMSER 823
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S LPIH
Sbjct: 824 EQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSRLPIH 883
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK-HP 770
QDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A E +K++ ++ ++ HP
Sbjct: 884 QDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVA----EFVKKEVAREAAQGHP 939
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 940 ---IAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQL 977
>gi|330812904|ref|XP_003291356.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
gi|325078456|gb|EGC32106.1| hypothetical protein DICPUDRAFT_95344 [Dictyostelium purpureum]
Length = 862
Score = 341 bits (875), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 176/401 (43%), Positives = 255/401 (63%), Gaps = 24/401 (5%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PM++ P W +G YL ++R +G++ Q + S+ + + +++ AL+ LG+T W
Sbjct: 294 PMVIKPLPWISPFEGPYLHYKVPILRANGNKSQ---ITSLLKSDLSQIYRALNVLGNTPW 350
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----MTEVQKWKWSVRKAKKI 557
+NK+ ++ W +GG+IA + + + P PL ED ++ +K +K K+
Sbjct: 351 VINKKAYDIINEAWEAGGDIADMPRKINYEYP--PLPEDVLTSLSSRKKHFLLEKKISKL 408
Query: 558 NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
N++ HS R D + KL VA + D Y+PHNLDFRGR+YP+ PHLNHL SD+CR +L+F
Sbjct: 409 NKDLHSLRSDCKYKLEVAEKFLDHT-IYFPHNLDFRGRSYPIPPHLNHLGSDLCRSLLKF 467
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
+ +PLGK GL WLKI ++NL+ GV+K+SH R+ F ++ I DSA+NP+ G RWWL
Sbjct: 468 EKSKPLGKRGLDWLKIQISNLY--GVDKVSHADRIKFTTENIENIMDSADNPLKGKRWWL 525
Query: 678 TAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
A+ P+Q LAACI L+EAL+S +P S+LPIHQDG+CNGLQHYAALG + L A VNL
Sbjct: 526 NADYPWQALAACIELTEALRSPNPEEFCSNLPIHQDGTCNGLQHYAALGGDELGAIKVNL 585
Query: 738 VAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
+ +KP DVY+ +A V EI+++++ + A ++DRKLVKQTVMTSVYG
Sbjct: 586 IPSDKPQDVYTGVAGLVAEIVEKEAEEGNK------FAIFFRGRIDRKLVKQTVMTSVYG 639
Query: 798 VTFVGAREQIKRRLEEKGH------ITDDRQLFAAACYAAK 832
VT++GAREQI L+EK DD +F+A+ Y K
Sbjct: 640 VTYIGAREQIHSSLKEKLDEETNPLEIDDEFMFSASSYITK 680
>gi|320582765|gb|EFW96982.1| mitochondrial RNA polymerase [Ogataea parapolymorpha DL-1]
Length = 1327
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 216/615 (35%), Positives = 333/615 (54%), Gaps = 60/615 (9%)
Query: 227 LSEAIEREQKMQRTKK-------QKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
++ +E+E +++ T +K + P++ LL K A+ + +++ ++
Sbjct: 442 VARKLEKENQLEDTSSFDKERYSEKLKHGPYLTLLKPSKSAITTILEVIKTCVSSDLAHG 501
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFL----EKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
V + + IG A+E E + L + KN++ I T E +K V
Sbjct: 502 APVSKVVMAIGRAMELEFKAQRLLAADIDVNKNFR---AIRKTPE--------FKKFVRG 550
Query: 336 LIKSKRVMEAQKLLKNEETKP-----WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP 390
S+ + EA+K ++ + W D++ ++GS ++ LL++ A V V D
Sbjct: 551 AKASQLIREAEKRAESSAGQSIAFVSWDTDSRCRVGSVMLSLLLQVAKVD--VEGTDPIT 608
Query: 391 PDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE--GLDRSAKHMLIPYVPML 444
D + PAF H + + + GV++ + G +R + ++PM+
Sbjct: 609 GDTKTALAPAFYHTYD-------YQNGSKVGVIKLNTKFASKLGTERVDNTLQPHFMPMI 661
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE-ALKSVTGNCMKKVFEALDTLGSTKWRV 503
P+ W +N GGY S V++ S +Q A + M V +AL+ LGST W V
Sbjct: 662 AKPRPWTTHNDGGYYLKKSAVLKAKNSPEQAAYARTAAIKGKMDTVLQALNNLGSTAWTV 721
Query: 504 NKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEKPLSE-DMTEVQKWKWSVRKAKKINQE- 560
NK+VL V+ +W +G + + L +P +P ++ + E K K RK + I +E
Sbjct: 722 NKEVLKVMIQVWNTGEEFLDIPKFRETLNLPPQPSTDASLEEFFKHK---RKCQLICREF 778
Query: 561 --RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
S RCDT KL +AR E Y+PH+LDFRGRAYPM P+ NHL +D+ RG+L+F
Sbjct: 779 SKDRSMRCDTNYKLEIARAYVGER-IYFPHSLDFRGRAYPMPPYFNHLGNDLSRGLLKFW 837
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
G+ LG+ GLRWLKIH+ NL G +KLS + R+ +V++HL EIF+SA +P+ GSR W+
Sbjct: 838 NGKQLGEEGLRWLKIHVCNLM--GFDKLSLNDRVKYVDDHLDEIFESARDPLGGSRMWVN 895
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A+ P+Q LA+ + L A + P ISH P+HQDG+CNGLQHYAALG + A VNLV
Sbjct: 896 ADKPWQFLASAMELERAYRLPDPTQFISHQPVHQDGTCNGLQHYAALGGDIEGARQVNLV 955
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
+KP+DVY+ +A V + ++ D + AK++ D + RKLVKQTVMTSVYGV
Sbjct: 956 PADKPSDVYTHVAHLVEKSVQEDLEAGSEE------AKLVKDVISRKLVKQTVMTSVYGV 1009
Query: 799 TFVGAREQIKRRLEE 813
T+VGAR QI +RL++
Sbjct: 1010 TYVGARAQITKRLKD 1024
>gi|448517808|ref|XP_003867858.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380352197|emb|CCG22421.1| Rpo41 mitochondrial RNA polymerase [Candida orthopsilosis]
Length = 1291
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 233/704 (33%), Positives = 367/704 (52%), Gaps = 74/704 (10%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL- 213
+YKR++ E RE FNL R+R++ E E +++K + + +KR NL
Sbjct: 344 IYKRLQTDEQREKYNEALETFNLDRQREI--EIRGIEGAKEKWKH-DFEEAQKRGDFNLN 400
Query: 214 PHIKGLFLGWFGPLSEAIEREQKMQR---------------TKKQKAAYAPHIELLPADK 258
+ W+ L IE+E KM + T K +A YAP + + A+K
Sbjct: 401 KSMNAQCYDWYQKLIPLIEKEHKMCKALLRDDEPVAQDDTTTTKDRAFYAPFLTKVGAEK 460
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
AVI + +++ L +G + ++ V+A +G AIE E R + ++ + +A +
Sbjct: 461 AAVITILELLKLNASGSNNGGMRAVKAITSVGRAIEMEYRTSNLADQEYKMSVSRKVAGS 520
Query: 319 EEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIETA 377
S+ K+++R ++S EE P W T++++G LV L+ A
Sbjct: 521 ----SQMKKIVRNSIDS---------------QEEADPEWDHATRSRVGGVLVSFLMAIA 561
Query: 378 YVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML 437
V+ + D PAF H + + GQ R+GV++ + + L ++
Sbjct: 562 KVKVRRQTPKGTIEDYHPAFFHSMQFV---GGQ----RFGVIKIHNEISKNLSGTSFMET 614
Query: 438 IP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEAL 493
I +PMLV PK W + G L+ + ++R + + + +K+ GN +++VF+ L
Sbjct: 615 IQPQSLPMLVKPKPWDSFYGGIGLYSKNALVRMKDAPETEAYVKAAAKRGN-LQEVFDGL 673
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTEVQKW---K 548
+ LG+T W +NK+V V+ W G + V + P+ LS D +++ K
Sbjct: 674 NVLGTTAWTINKKVFDVISHYWNKGDEFLTIPPVLESAQFPPK--LSPDADPSERYDHTK 731
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
+++ ++ + R SQRCD KL +AR E+ Y+PHNLDFRGRAYP+ PHLNHL
Sbjct: 732 ATIKAVREFSSSR-SQRCDYNYKLEIARGFIGEK-LYFPHNLDFRGRAYPISPHLNHLGG 789
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ R + F EG+ LG+ GL WLK+ LAN++ GV+K R+ F +H+ E SAE+
Sbjct: 790 DLTRSLFLFWEGKELGERGLEWLKVQLANVY--GVDKAPISERIQFATDHIEEAIKSAED 847
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P+ +WW AE P+Q L+ C L+EA K P +S+LP+HQDG+CNGLQHYAALG +
Sbjct: 848 PLE-YKWWTKAEKPWQALSVCFELAEAYKLPDPTKFVSYLPVHQDGTCNGLQHYAALGGD 906
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL ++P DVY+ ++ V + D+ K H A+ K D++ RK+VK
Sbjct: 907 IEGANQVNLNPSDRPQDVYTFVSKLVQNRVNADAEKG---HDIAIFFK---DKIKRKVVK 960
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
QTVMT+VYGVTFVGA QIK+++ + H +D+ Y K
Sbjct: 961 QTVMTNVYGVTFVGALAQIKKQVAQ--HFGEDQDAHIYTKYLTK 1002
>gi|407919789|gb|EKG13012.1| DNA-directed RNA polymerase bacteriophage type [Macrophomina
phaseolina MS6]
Length = 1456
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 199/495 (40%), Positives = 276/495 (55%), Gaps = 43/495 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR-------PAFRHRFKTILKHPG 409
W +AK+G+ + ++E A + P + R PAF H + G
Sbjct: 558 WAPLIKAKVGALCLSKILEAAKI-----PVTREEKETRRQLTSNEPAFYH---ATVYSAG 609
Query: 410 QKTTKRYGVVECDPLVLEGLDRSA-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+K+ G++ VL+ L R + PM+V P W GY +GGYL P +++
Sbjct: 610 RKS----GMIRLHQQVLDKLRREPMRGSFGTKYPMIVEPLPWTGYRRGGYLRYPEPIIKE 665
Query: 469 HGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
Q A+ ++ M +V L LG T W+VN+ V V+ W +G I +
Sbjct: 666 KKQDDAQRIYAMAAIEKGDMDQVLAGLSVLGKTAWKVNRDVFKVVVEAWNTGEPIGKIAP 725
Query: 527 RNDVL-IPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKLSVARRMKDEE 582
N + P +P E + + + K+I+ + HSQRC +L VAR KDE
Sbjct: 726 ENPKMEYPPEPGPE--ASKKDKALYLNEKKRIDNAKMSYHSQRCFQNFQLEVARAFKDEV 783
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY+PHN+DFRGRAYP+ P LNHL +D+ RG+L FA+G+ LG GL WLKIHLAN++ G
Sbjct: 784 -FYFPHNMDFRGRAYPIPPLLNHLGADLARGLLTFAKGKQLGPVGLSWLKIHLANVY--G 840
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K S R AF H+ +I+DS ENP+ G +WWL AEDP+QCLA C L A S P
Sbjct: 841 YDKASLKDREAFAMEHIQDIYDSCENPLTGRKWWLKAEDPWQCLATCFELKHAFDSPDPS 900
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
ISHLP+HQDG+CNGLQHYAALG + AA VNL G++P+D+YS +A EI+K++
Sbjct: 901 QYISHLPVHQDGTCNGLQHYAALGGDKAGAAQVNLEPGDRPSDIYSAVA----EIVKKEV 956
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE----EKGHIT 818
KD + A+IL + RK+VKQTVMT+VYGVTF GAR Q+ ++LE E+ +
Sbjct: 957 AKDAESGDR--FARILDGNITRKVVKQTVMTNVYGVTFTGARLQVIKQLEAILPEEYQV- 1013
Query: 819 DDRQLFAAACYAAKV 833
D LF Y AK+
Sbjct: 1014 -DSLLFTMGGYVAKL 1027
>gi|389643156|ref|XP_003719210.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
gi|351638979|gb|EHA46843.1| DNA-directed RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1422
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 199/565 (35%), Positives = 312/565 (55%), Gaps = 37/565 (6%)
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
A+ ++ M L M G D+ + + Q + + E++ + +++ KR+K++
Sbjct: 440 AALTILSVMSSLAMHG-VDKGITITQTIATVARSAEEDA---AAFQRSVRQKREKLMRKN 495
Query: 319 EEVLSKEK--ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
+K E +S ++ + + Q + + W + +GS L+ L++
Sbjct: 496 GFARAKAAGAEPNAPGTDSTLRVTDIYDIQ----TDSAERWPASIRLTIGSVLLSSLVDV 551
Query: 377 AYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A + +HP S +PAF + K K+YG + + +++ + R
Sbjct: 552 ATITVTKEHPETRETISAE--QPAFARSIQ-------YKQGKKYGTLAPNKSLVQLMMRE 602
Query: 433 A-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKV 489
K L ++PM+ P W ++KGGYL P++++R K Q+ A ++ M++V
Sbjct: 603 PRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVRIKRGEKDQKLYAEAAMARGDMEQV 662
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPL-SEDMTEVQKW 547
+ LD LG W +NK VL V+ +W SG I G+ + D+ PE+P SED +W
Sbjct: 663 AKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIPPLSVDIKAPEEPSPSEDPMVRFRW 722
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
++K + I HSQRC T +L +A +D+ Y+PHN+DFRGRAYP+ +LNH+
Sbjct: 723 IRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT-LYFPHNVDFRGRAYPLPIYLNHIG 781
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+D+ R +L F + +PLG+ GL+WLK+HLAN++ G +K S R F +H+ +I DSA
Sbjct: 782 ADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GFDKASLSERAQFALDHIEDIVDSAT 839
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP++G RWWL AEDP+QCLA C L A P LP+HQDG+CNGLQHYAALG
Sbjct: 840 NPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQYECRLPVHQDGTCNGLQHYAALGG 899
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
++ A VNL G++PADVY+ +A V E ++ D K +A L ++ RK+V
Sbjct: 900 DSWGARQVNLEPGDRPADVYTAVANLVSESIEEDIAKG------VKMAAALKGKIKRKVV 953
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLE 812
KQTVMT+VYGVTFVGA+ Q+K++L+
Sbjct: 954 KQTVMTNVYGVTFVGAKSQVKKQLD 978
>gi|119481989|ref|XP_001261023.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
gi|119409177|gb|EAW19126.1| mitochondrial DNA-directed RNA polymerase, putative [Neosartorya
fischeri NRRL 181]
Length = 1376
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 202/580 (34%), Positives = 321/580 (55%), Gaps = 35/580 (6%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
+K++ Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 424 QKERCEYGVYLRCLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELIAE 483
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+ L+ +++ A E + ++K+ R + ++L+ QK+ + + T W
Sbjct: 484 AALKNETGADSRRLKALKELLAGRKKKDGRAKWHALV--------QKMQQEDATIMWSPR 535
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPAD----YSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
AK+G+ L+ LL E + PV D ++PAF+H ++ +R
Sbjct: 536 VTAKVGAVLMSLLFEVG--KAPVTIEDPETKKKTVTMQPAFQHAYQITWG-------RRT 586
Query: 417 GVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQ 474
G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G Q
Sbjct: 587 GYLHLHPAIVQIIAKEPTADLLGRHLPMVCKPRPWKGMKDGGFLLYQSDIVRTTPGESLQ 646
Query: 475 QEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+K+ + N ++ + LD LGST W +N+ VL+V+ W SG +A L L
Sbjct: 647 PTYIKTALENNGLEDIRRGLDNLGSTGWTINRDVLNVMLEAWNSGEAVANLAPLEPDLPL 706
Query: 534 EKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+ + ++W VR+ + HS RC ++ +AR ++ FY PHN+D
Sbjct: 707 PPKPAPEAGYHAEKEWDTLVREVENRRSGLHSMRCFQNFQMELARAYRNVT-FYLPHNMD 765
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGRAYP+ P+LN + +D RG+L F+E +PLG SGLRWLKI +ANL G +K S R
Sbjct: 766 FRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLRWLKIQIANL--SGFDKASMSER 823
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S LPIH
Sbjct: 824 EQFTMDHLDDVLDSADKGLHGRRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSRLPIH 883
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A V + + R++ + HP
Sbjct: 884 QDGSCNGLQHYAALGGDSVGAQQVNLEPSDRPSDVYTGVAEFVKQEVAREAAQ---GHP- 939
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 940 --IAKILDGRITRKIVKQTVMTNVYGVTFMGAMRQVRKQL 977
>gi|334326802|ref|XP_001375862.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Monodelphis domestica]
Length = 1196
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/470 (39%), Positives = 282/470 (60%), Gaps = 25/470 (5%)
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKT 412
+ K W +LG++L+E+L+++ Y+ + ++P+ + + P H + + +
Sbjct: 524 QEKVWPDVLLVRLGTQLIEILVQSIYMPNSLSPSQATKRFI-PVLYHVYSFL-------S 575
Query: 413 TKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT- 468
K+ G ++ P ++ +D +A L + +PML PP W N G Y+ P+ +MR
Sbjct: 576 IKQIGFIKPHPSFIQLVDEAAYTTLTFDVSVMPMLCPPIPWTSPNFGAYVLHPTKLMRCL 635
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
G+ + Q+ L+S + V +AL LG+ W+VN+ VL ++ SI+ + GN V
Sbjct: 636 DGTVQHQQLLESCPQGQLNAVLDALTQLGNCAWKVNQPVLDLVISIFNAKGNKKLDVPPP 695
Query: 529 DVLIPEKPLSE-----DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
P P E +E K + + + K +E +S R D KLS+A ++D+
Sbjct: 696 VSEAPTPPSYELSKGASSSEKAKLRREIAQCHKTAREMYSLRMDALYKLSIAHHLRDQ-I 754
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
F++PHN+DFRGRAYP PH NHL SD+ R +L FAEG+PLG +GL WLKIHL NL +G
Sbjct: 755 FWFPHNMDFRGRAYPCPPHFNHLGSDMTRAILLFAEGKPLGPNGLDWLKIHLINL-TGLK 813
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K S RLA+ L +I DSA+NP+ G +WW+ ++P+Q LA C+ ++ A++S P +
Sbjct: 814 KKESLQARLAYANEILEDILDSADNPLTGRKWWMDVDEPWQALACCMEIANAIRSPDPTA 873
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISH PIHQDGSCNGLQHYAALG++ + A +VNL+ + P DVYS +A V E+ KRD+
Sbjct: 874 YISHFPIHQDGSCNGLQHYAALGQDVIGATSVNLMPCDVPQDVYSGVAQLVEELRKRDAA 933
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ S +A++L ++RKLVKQTVMT VYGVT G R QI++RL+E
Sbjct: 934 EGKS------IAQVLEGFINRKLVKQTVMTVVYGVTKYGGRLQIEKRLKE 977
>gi|118360511|ref|XP_001013489.1| DNA-dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89295256|gb|EAR93244.1| DNA-dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1410
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 229/709 (32%), Positives = 372/709 (52%), Gaps = 84/709 (11%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK- 236
L RQ+ E E+ + V+++ ++ + + LA N+ K + WF L + I+ EQ+
Sbjct: 405 LFERQLILEQESQSQAVNKFLKVYEDLNKFGLAVNIGFAKRYIMNWFPNLCKVIKEEQQQ 464
Query: 237 --MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVM----------AGHEDRCVQ--V 282
+ K ++ YA ++ L A+++A++ + ++M ++ E+ V +
Sbjct: 465 CLLGELKGERKYYATYLTKLSAERIAILSLTELMKQILRISNKFKESAENMENTIVDCSI 524
Query: 283 VQAAVH--IGMAIEQEI---------------RIHSFLEKTK------------NYKRKK 313
V A+ IG A+ + + S +EK + KK
Sbjct: 525 VSKAIFSSIGEAVNLQYIYEQEEKLNKEKEKKDLESLVEKINSNNTSNSSEEEVTQRAKK 584
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELL 373
+AD K KE +K + SL K K KL E P + Q K+GS L+ L+
Sbjct: 585 YLAD------KTKEANQKIMESLYKKKN--STSKLNYQEIGIP--KTIQLKIGSLLIYLM 634
Query: 374 IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
ET ++ N ++ + P+++ + GV+ + + L +
Sbjct: 635 KETIQIR---NEQNFWIHLLVPSYK---------KSKNNDGYVGVININEDFIISLYEQS 682
Query: 434 KHMLIPY------VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMK 487
+ P+ +PM+ P W+ Y GGY P+ +MR H S Q++ L + + +
Sbjct: 683 EKSESPFMHLERCLPMIYKPAPWQDYEIGGYYQRPTNLMRIHESPIQEKVL---SYSDLS 739
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
K++ L+T+ T WR+NK+V V+E IW GG G + R + + E +
Sbjct: 740 KMYNILNTVSQTAWRINKKVFDVMEKIWEEGGG-QGEIPRRFYDYKDYVYQYQLKECKNR 798
Query: 548 KWSVRKAKKINQER--HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
R KKI ++R HS R D +LK++VA+ ++ E Y+PHN+DFRGR YP+ PHLNH
Sbjct: 799 DEQQRLMKKIQEQRDMHSMRSDFQLKINVAKAFRNIEKIYFPHNVDFRGRIYPIPPHLNH 858
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+ +D+ RG+LE++E + +GK+G WLK+HL+NL G +KLS R+AF E+ +
Sbjct: 859 MGADISRGLLEYSESKKIGKTGWYWLKVHLSNLL--GQDKLSFPERVAFAESQFENVKRW 916
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
A +P+ R W+ ED +Q LA +++EALK +P ISHL +H DGSCNGLQHYAA+
Sbjct: 917 ASDPLK-HREWIQVEDAWQALATIFDVAEALKLENPEDYISHLHVHMDGSCNGLQHYAAI 975
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
GR+ A VNL+ +KP D+YS +A V + + +D+N D +K+ +AK L + RK
Sbjct: 976 GRDKDGAMQVNLMNAQKPGDLYSHVARMVEQRVGKDANDDLAKY--NAIAKKLSGNIKRK 1033
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+VKQTVMTSVYGVTFVGAR+QI ++L +K +T++ + + A+ Y A+ +
Sbjct: 1034 VVKQTVMTSVYGVTFVGARKQIYKQLRDKDFLTEE-EAYEASYYLAQTT 1081
>gi|219127813|ref|XP_002184122.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217404353|gb|EEC44300.1| polymerase dna-directed RNA polymerase [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 576
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 171/395 (43%), Positives = 256/395 (64%), Gaps = 19/395 (4%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PM+VPPK W ++GGY L + ++R HG Q+E L++V + VF+ L+ LG W
Sbjct: 19 PMIVPPKPWSRPDEGGYKMLRTELLRYHGCNMQKEVLQNVD---LSIVFDGLNALGRVPW 75
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
R+N++VL+V + W + + + ++D +PE+PL + Q+ W + +
Sbjct: 76 RINQRVLTVAQRCWDNNIPLGDIPSKDDNPLPEEPLH---PKRQEQFWEPETPGYESYDL 132
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
S RC LKL A + K+ E ++P+N+DFRGRAYP+ PHL+++ SD+CRGVL+FAE +
Sbjct: 133 RSLRCSAMLKLDQAEKFKEFEEIFFPYNMDFRGRAYPVPPHLSNVGSDLCRGVLKFAEAK 192
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLG GL WLK+HLAN G +K+S D R+ FV+++L ++ SAE+P G RWW++ ED
Sbjct: 193 PLGPRGLYWLKVHLANF--AGKDKMSFDDRVKFVDDNLEQVRLSAEDPFAGERWWMSLED 250
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
PFQ LA C+ + +A+ +P S + LP+H DGSCNGLQHYAALGR+++ AVNL A +
Sbjct: 251 PFQGLATCLEIIDAIDCGNPESFLCSLPVHMDGSCNGLQHYAALGRDSVGGKAVNLCAYD 310
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+P DVY + +HE+++R K+ S + A L LI DR +VK+TVMTSVYGVT++
Sbjct: 311 EPQDVYVGV---MHEVVRR---KELSYNRAAKLVNGLI---DRGVVKRTVMTSVYGVTYI 361
Query: 802 GAREQIKRRLEEKGHITDD--RQLFAAACYAAKVS 834
GAR+QI+ ++ KGH D+ ++F A Y A ++
Sbjct: 362 GARQQIQEKIISKGHDVDEMSNEIFQACGYVASLT 396
>gi|440472069|gb|ELQ40956.1| DNA-directed RNA polymerase [Magnaporthe oryzae Y34]
gi|440485237|gb|ELQ65213.1| DNA-directed RNA polymerase [Magnaporthe oryzae P131]
Length = 2046
Score = 340 bits (871), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 199/565 (35%), Positives = 312/565 (55%), Gaps = 37/565 (6%)
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
A+ ++ M L M G D+ + + Q + + E++ + +++ KR+K++
Sbjct: 440 AALTILSVMSSLAMHG-VDKGITITQTIATVARSAEEDA---AAFQRSVRQKREKLMRKN 495
Query: 319 EEVLSKEK--ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
+K E +S ++ + + Q + + W + +GS L+ L++
Sbjct: 496 GFARAKAAGAEPNAPGTDSTLRVTDIYDIQ----TDSAERWPASIRLTIGSVLLSSLVDV 551
Query: 377 AYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS 432
A + +HP S +PAF + K K+YG + + +++ + R
Sbjct: 552 ATITVTKEHPETRETISAE--QPAFARSIQ-------YKQGKKYGTLAPNKSLVQLMMRE 602
Query: 433 A-KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE--ALKSVTGNCMKKV 489
K L ++PM+ P W ++KGGYL P++++R K Q+ A ++ M++V
Sbjct: 603 PRKEFLARHLPMVCKPDPWTKFDKGGYLDQPTHLVRIKRGEKDQKLYAEAAMARGDMEQV 662
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPL-SEDMTEVQKW 547
+ LD LG W +NK VL V+ +W SG I G+ + D+ PE+P SED +W
Sbjct: 663 AKGLDALGRVGWNINKSVLDVVLQVWNSGEGIGGIPPLSVDIKAPEEPSPSEDPMVRFRW 722
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
++K + I HSQRC T +L +A +D+ Y+PHN+DFRGRAYP+ +LNH+
Sbjct: 723 IRELKKVENIKASYHSQRCHTNFQLEIAHAYRDQT-LYFPHNVDFRGRAYPLPIYLNHIG 781
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+D+ R +L F + +PLG+ GL+WLK+HLAN++ G +K S R F +H+ +I DSA
Sbjct: 782 ADLSRALLLFDKAKPLGEDGLQWLKVHLANVY--GFDKASLSERAQFALDHIEDIVDSAT 839
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP++G RWWL AEDP+QCLA C L A P LP+HQDG+CNGLQHYAALG
Sbjct: 840 NPLSGKRWWLGAEDPWQCLATCKELKAAFDMPDPAQYECRLPVHQDGTCNGLQHYAALGG 899
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
++ A VNL G++PADVY+ +A V E ++ D K +A L ++ RK+V
Sbjct: 900 DSWGARQVNLEPGDRPADVYTAVANLVSESIEEDIAKG------VKMAAALKGKIKRKVV 953
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLE 812
KQTVMT+VYGVTFVGA+ Q+K++L+
Sbjct: 954 KQTVMTNVYGVTFVGAKSQVKKQLD 978
>gi|241948027|ref|XP_002416736.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223640074|emb|CAX44320.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1300
Score = 337 bits (864), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 210/577 (36%), Positives = 303/577 (52%), Gaps = 45/577 (7%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K +A YAP + L DK ++ + ++ L G + +A +G AIE E RI
Sbjct: 455 KDRAMYAPFLLKLSPDKAIIVTILELFKLHATGGVISGFRAYKAIQSVGKAIEAEYRIGL 514
Query: 302 FLEK-TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRD 360
+K K + RK + ++++ +R M+ NE T W
Sbjct: 515 QAKKENKLFSRKHLSPQLQKLM-----------------RRTMQK----GNESTPEWDDA 553
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
T+A++G LV +L+ A ++ D PAF H + I R GV++
Sbjct: 554 TRARIGGVLVSILMSVAKLKVTRETPQGLIEDSHPAFFHSMQFI-------GGNRVGVIK 606
Query: 421 CDPLVLEGLDRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ L ++ I +PMLV PK W Y GG L+ + ++R S + + +
Sbjct: 607 VHTEISNILSGTSLTESIQPQALPMLVEPKPWNSYYGGGGLYSKTPLVRVRDSPETEAYI 666
Query: 479 KSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPE 534
K+ GN +K VFE L+ LG T W VNK+V +V+ W SG + V L +
Sbjct: 667 KAANERGN-LKAVFEGLNVLGKTAWTVNKKVFNVISHYWNSGEEFLSIPPVSEEPRLPKD 725
Query: 535 KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
P + D + + S +A SQRCD +L +AR E+ Y+PHNLDFRG
Sbjct: 726 VPDNSDPEVLLNYTMSKFRALDEYMSNKSQRCDNNYRLEIARAFIGEK-LYFPHNLDFRG 784
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
RAYP+ PH NHL D+ R + F +G+ LG+ GLRWLKI LAN++ GV+K S R+ F
Sbjct: 785 RAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLRWLKIQLANVY--GVDKESLTKRVEF 842
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
V+ +L ++F SA +P+ + WW AE P+Q L+ C L+EA K P +SHLP+HQDG
Sbjct: 843 VDANLEKVFASAADPLASNAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDG 902
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQHYAALG + A VNL +KP DVYS +A V ++ D+ K
Sbjct: 903 TCNGLQHYAALGGDVEGANQVNLKPADKPQDVYSYVAKLVEARVRADAEKGDE------F 956
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
A L D++ RK+VKQTVMT+VYGVTFVGA EQI++++
Sbjct: 957 AIFLQDKIKRKIVKQTVMTNVYGVTFVGAIEQIRKQI 993
>gi|396464712|ref|XP_003836965.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
gi|312213521|emb|CBX89951.1| similar to mitochondrial DNA-directed RNA polymerase [Leptosphaeria
maculans JN3]
Length = 1425
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 228/659 (34%), Positives = 338/659 (51%), Gaps = 50/659 (7%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPH--IKGLFLGWFGPLSEAIEREQKMQ 238
RQ++ E ++ + VD +K + KM E + L I+ + W+ L + R++
Sbjct: 363 RQLRMEQDSLDAAVDRWKREDEKMQEMGIHGVLKSKPIQAIMHNWYQALV-PLFRQRISH 421
Query: 239 RTK-----------KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGH-EDRCVQVVQA- 285
TK + +AY P + +K+A I + + + M GH ED + A
Sbjct: 422 ATKVLAAGPKDFVREDASAYGPWLTQSKPEKLAAITVARGINSCMRGHKEDGTAMKISAL 481
Query: 286 AVHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
+V +G I E +R +F+ K + RK+++ E LSK S I +
Sbjct: 482 SVSLGTDIQDALNSEVAVRRAAFIRKQRKQTRKQLV----EKLSKNS----PEEASTISA 533
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH-PVNPADYSPPDVR-PAF 397
+ ++L + + + KLG+ +ELL+ A + V+P AF
Sbjct: 534 TQSTTVPEVLPDFAKREIPLSIRTKLGAMCLELLLRAATMTVVAVDPKTGEEVSTNIAAF 593
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
H+ + H G+K Y V D L+ + + S + + +PM+V PKKW Y GG
Sbjct: 594 HHQ---VSFHQGKKVG--YIVPHHD-LMAKLRNDSVRAIANVKLPMVVEPKKWTSYEDGG 647
Query: 458 YLFLPSYVMRTH-GSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y P V+R G Q+ +S N M+KV LD LG W++N V V+ W
Sbjct: 648 YYTTPQKVVRQKLGDSAQRAYAQSAIDNGDMQKVLSGLDVLGKVPWQINNAVFDVMAQAW 707
Query: 516 VSGGNIAGLVDRNDVL--IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
+G +IAGLV + PE P + +W +++ + HSQRC +L
Sbjct: 708 NNGESIAGLVSEELRVQRPPEPPADAPYRDRAEWSKKLQEYENEKGGLHSQRCFQNFQLE 767
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
AR E+ Y+PH++DFRGRAYP+ P LNH+ SD+ RG+L+FA G+ LG GL+WLKI
Sbjct: 768 TARAFAREKAIYFPHSVDFRGRAYPIPPILNHIGSDISRGLLKFAHGKELGPVGLQWLKI 827
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HLANL+ G +K S R F + + EI DSA NP+ G RWW +AEDP+QCLA C+ L
Sbjct: 828 HLANLY--GFDKASLREREQFALDKMDEIRDSATNPLTGRRWWASAEDPWQCLACCMELK 885
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 886 SAFDLPDPTRYVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVAEL 945
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V E + D+ K S AK + + RK+VK+TVMT+VYGVTF+GA+ Q+ L+
Sbjct: 946 VKEEVAEDAAKGKSH------AKFIEGYITRKVVKRTVMTNVYGVTFMGAKAQVYDELK 998
>gi|317136824|ref|XP_001727312.2| DNA-dependent RNA polymerase family protein [Aspergillus oryzae
RIB40]
Length = 1648
Score = 336 bits (862), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 222/664 (33%), Positives = 351/664 (52%), Gaps = 49/664 (7%)
Query: 169 EMKKRKFNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGP 226
E K +N LR+RQ++ ++ + ER E+ +++ ++ + + + W
Sbjct: 617 EEKLELYNQLRQRQLETDSIRTSLERWRQEFTQMQKSGLD--MTGGGKKLGTIMNQWHMG 674
Query: 227 LSEAIEREQKMQ--------RT--KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L I+ E K+ RT +K++ Y ++ L +++A + + ++ G
Sbjct: 675 LVSRIQEELKLVDEAEANPIRTFEQKERYDYGVYLRSLDPERLAALTILAVISTFSRGGM 734
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSL 336
++ ++V A IG ++ E+ L+K + +++ A E + ++K+ R +
Sbjct: 735 EKGIKVSAIATGIGKDLQDELIAEMTLKKQQTGDARRLKALREILAGRKKKDGRASWQKI 794
Query: 337 IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPD 392
+ K + W +AK+G+ L+ L + V +HP D
Sbjct: 795 V--------HDFEKEDPAAIWPPRVKAKVGAVLMSFLFDVGKVPVLTEHPRT--DKKTIV 844
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
++PAF+H ++ K+ G V P V++ + R +L +PM+ PK W
Sbjct: 845 MQPAFQHSYQI-------NWGKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWN 897
Query: 452 GYNKGGYLFLPSYVMR-THGSRKQQEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G GGY S ++R T G Q +K+ + N +++V E L+ LG T WR+N+ V
Sbjct: 898 GPKDGGYFIYQSSIVRVTPGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFE 957
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W SG IA L N L P + E + +KW ++R+ + HS RC
Sbjct: 958 VMLEAWNSGEAIASLAPLNPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCF 1017
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L VAR +++ FY PHN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG G
Sbjct: 1018 QNFQLEVARAYRNDT-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARG 1076
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKI +ANL G +K S R + +HL E+ DSA ++G RWWL AEDP+QCLA
Sbjct: 1077 LRWLKIQIANL--AGFDKASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLA 1134
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
AC L AL+ P S LPIHQDGSCNGLQHYAALG + + A VNL ++P+DVY
Sbjct: 1135 ACCELRNALQHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDKVGAQQVNLEPSDRPSDVY 1194
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
S +A V E + R++ + +AK+L ++ RK+VKQTVMT+VYGVTF+GA +Q+
Sbjct: 1195 SGVAEFVKEAVAREAKEGIP------IAKLLDGKITRKIVKQTVMTNVYGVTFMGAMKQV 1248
Query: 808 KRRL 811
+++L
Sbjct: 1249 RKQL 1252
>gi|238488645|ref|XP_002375560.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|83770340|dbj|BAE60473.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697948|gb|EED54288.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
flavus NRRL3357]
gi|391866652|gb|EIT75920.1| DNA-directed RNA polymerase RPO41 [Aspergillus oryzae 3.042]
Length = 1375
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 222/664 (33%), Positives = 351/664 (52%), Gaps = 49/664 (7%)
Query: 169 EMKKRKFNLLRRRQVKQET--EAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGP 226
E K +N LR+RQ++ ++ + ER E+ +++ ++ + + + W
Sbjct: 344 EEKLELYNQLRQRQLETDSIRTSLERWRQEFTQMQKSGLD--MTGGGKKLGTIMNQWHMG 401
Query: 227 LSEAIEREQKMQ--------RT--KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
L I+ E K+ RT +K++ Y ++ L +++A + + ++ G
Sbjct: 402 LVSRIQEELKLVDEAEANPIRTFEQKERYDYGVYLRSLDPERLAALTILAVISTFSRGGM 461
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSL 336
++ ++V A IG ++ E+ L+K + +++ A E + ++K+ R +
Sbjct: 462 EKGIKVSAIATGIGKDLQDELIAEMTLKKQQTGDARRLKALREILAGRKKKDGRASWQKI 521
Query: 337 IKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPD 392
+ K + W +AK+G+ L+ L + V +HP D
Sbjct: 522 V--------HDFEKEDPAAIWPPRVKAKVGAVLMSFLFDVGKVPVLTEHPRT--DKKTIV 571
Query: 393 VRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWK 451
++PAF+H ++ K+ G V P V++ + R +L +PM+ PK W
Sbjct: 572 MQPAFQHSYQI-------NWGKKSGYVHLHPEVVQIVAREPTADVLGRQLPMICKPKPWN 624
Query: 452 GYNKGGYLFLPSYVMR-THGSRKQQEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G GGY S ++R T G Q +K+ + N +++V E L+ LG T WR+N+ V
Sbjct: 625 GPKDGGYFIYQSSIVRVTPGETLQPSYIKAAMENNGLEQVREGLNILGRTGWRINRDVFE 684
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQERHSQRCD 567
V+ W SG IA L N L P + E + +KW ++R+ + HS RC
Sbjct: 685 VMLEAWNSGEAIASLAPLNPDLPPPPKPAPEEGLAAEKKWDNAMREIENRRSGMHSNRCF 744
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
+L VAR +++ FY PHN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG G
Sbjct: 745 QNFQLEVARAYRNDT-FYLPHNMDFRGRAYPLPPYLNQMGADNARGLLLFSEAKPLGARG 803
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
LRWLKI +ANL G +K S R + +HL E+ DSA ++G RWWL AEDP+QCLA
Sbjct: 804 LRWLKIQIANL--AGFDKASLSEREQWTMDHLDEVLDSANKGLHGRRWWLDAEDPWQCLA 861
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
AC L AL+ P S LPIHQDGSCNGLQHYAALG + + A VNL ++P+DVY
Sbjct: 862 ACCELRNALQHPDPTQYPSRLPIHQDGSCNGLQHYAALGGDKVGAQQVNLEPSDRPSDVY 921
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
S +A V E + R++ + +AK+L ++ RK+VKQTVMT+VYGVTF+GA +Q+
Sbjct: 922 SGVAEFVKEAVAREAKEGIP------IAKLLDGKITRKIVKQTVMTNVYGVTFMGAMKQV 975
Query: 808 KRRL 811
+++L
Sbjct: 976 RKQL 979
>gi|189206131|ref|XP_001939400.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187975493|gb|EDU42119.1| DNA-directed RNA polymerase, mitochondrial precursor [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1430
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 224/660 (33%), Positives = 328/660 (49%), Gaps = 55/660 (8%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRL--APNLPHIKGLFLGWFGPLSEAIER----- 233
RQ++ E + + V+ +K K+ + + N I+ + W+ L A ++
Sbjct: 368 RQLQMEQDGVDAAVNRWKHENEKLADIGIHGVMNTKPIQAMMYSWYKALVPAFKKRIEHA 427
Query: 234 -----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVM--AGHEDRCVQVVQAA 286
E K++ +Y +E +K+A I + + + G ++ ++V +
Sbjct: 428 KQVLSESSKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSALS 487
Query: 287 VHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
IG I E + R +FL+K +RK+ D LSK +L+
Sbjct: 488 TSIGSEIQDYLDSESQARRDAFLKK----QRKQTRLDLFNKLSKNPPVLQTEPGQ----- 538
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFR 398
E+ L + E + KLG+ +E L+ A + R AF
Sbjct: 539 --RESVASLDSFEKTTIPLVARTKLGAMCLENLLSCATLTVTAKDPRTGEEKSRSMAAFH 596
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNKGG 457
H+ G K+ G + VL L + H + +PM++ PK W + GG
Sbjct: 597 HQV-------GFHQGKKLGFIVPHHEVLTKLRTESVHSIHNVRLPMVIEPKPWSSFEDGG 649
Query: 458 YLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y LP V+R G Q A ++ M KV LD LG W++N V V+ W
Sbjct: 650 YYTLPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQINAPVFDVMARAW 709
Query: 516 VSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELK 571
+G ++ L+ V E+P D T ++ KW + NQ HSQRC +
Sbjct: 710 NAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNQIGGLHSQRCFQNFQ 769
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SDV RG+L+FA G+ LG GL+WL
Sbjct: 770 LETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAHGKELGTVGLQWL 829
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R F ++L EI DSA NP++G RWW AEDP+QCLA CI
Sbjct: 830 KIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKAEDPWQCLACCIE 887
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L AL S P IS LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 888 LKNALDSPDPARFISQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVA 947
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V E++ +D+ K LAK + + RK+VK+TVMT+VYGVTF+GA+EQ+ L
Sbjct: 948 ELVKEMVTKDAAKGSE------LAKFVEGHISRKVVKRTVMTNVYGVTFMGAKEQVHDEL 1001
>gi|255730283|ref|XP_002550066.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
gi|240132023|gb|EER31581.1| hypothetical protein CTRG_04363 [Candida tropicalis MYA-3404]
Length = 1293
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 239/722 (33%), Positives = 367/722 (50%), Gaps = 83/722 (11%)
Query: 131 HQLMCLEPRRRIFVQDPPWFSSIFLKGLYKRIKLQEYREMKKRKFNLLRRRQVKQETEAW 190
H L+ LEP VQ I + GL ++ + K F + + Q ++ A+
Sbjct: 309 HSLLGLEPSTESVVQFSRQVKEI-IDGLDDEQVKEDIKAGKFNHFEVYSKLQTDEQRSAF 367
Query: 191 ERMVDEY-----KELEAKMIE--------------KRLAPNLPHIKGL---FLGWFGPLS 228
++ + K++E + IE KR NL KGL W +
Sbjct: 368 SEALETFNYERQKQIEIRGIEGAKEKWKHDFEEQQKRGDLNL--TKGLNAQCYEWVQEMV 425
Query: 229 EAIERE-----------QKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
I++E K K ++A YAP + +K AVI + +++ L G
Sbjct: 426 PIIQKELEACKELLNDGDKASDAKSERALYAPFFIKVDPEKAAVITILELLKLHSTGGVV 485
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLI 337
+ +A V +G AIE E R++ +++ E LS K R+ +LI
Sbjct: 486 NGFRAYKAVVGVGKAIEGEFRMNLQVQQ-------------ENKLSSSKNN-SPRLKNLI 531
Query: 338 KSKRVMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
+ + + K+E+ P W T++++G LV L+ + V+ + D+ PA
Sbjct: 532 R-------ETIKKDEDEIPEWDNVTRSRVGGVLVSALMTVSKVRVVKKTPEGVIKDLHPA 584
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRS--AKHMLIPYVPMLVPPKKWKGYN 454
F H + I GQ R GV++ + + L + A+ + Y+PML+ PK W ++
Sbjct: 585 FYHGVQFI---GGQ----RVGVIKVHAEISKLLTGTSFAESVQPQYLPMLIRPKPWTSFH 637
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
GG LF S ++R + + + +K+ + GN + +VF+ L+ LG+T W VNK+V V+
Sbjct: 638 GGGSLFSKSPLVRMKDAPETEAYVKAASKRGN-LDQVFDGLNVLGNTAWTVNKRVFDVIS 696
Query: 513 SIWVSGGNIAGLVD-RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTE 569
W G + + +PEK L D K S+ K + + SQRCD
Sbjct: 697 HYWNKGEEFLSIPPVMEEARLPEK-LPADADPQAKLDNSIALYKGLREFAGNRSQRCDYN 755
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
KL +AR E Y+PHNLDFRGRAYP+ PH NHL D+ R + F EG+ LG+ GLR
Sbjct: 756 YKLEIARGFIGER-LYFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWEGKQLGEEGLR 814
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLK+ LAN++ GV+K S DGR+ F+++++ + SA++P WW AE P+Q L+ C
Sbjct: 815 WLKVQLANVY--GVDKESIDGRVKFIDDNIENVIASAKDPYAPDAWWQRAEKPWQALSVC 872
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
L EA + P +SHLP+HQDG+CNGLQHYAALG + A VNL E+P DVYS
Sbjct: 873 FELGEAYQLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDIEGANQVNLNPAERPQDVYSY 932
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A V + ++ D+ +AK+L +++ RK+VKQTVMT+VYGVTFVGA +QIK+
Sbjct: 933 VARLVEKRVREDAANGNE------IAKLLQNEIKRKVVKQTVMTNVYGVTFVGAIQQIKK 986
Query: 810 RL 811
++
Sbjct: 987 QI 988
>gi|121716567|ref|XP_001275845.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
gi|119404002|gb|EAW14419.1| mitochondrial DNA-directed RNA polymerase, putative [Aspergillus
clavatus NRRL 1]
Length = 1375
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 204/584 (34%), Positives = 318/584 (54%), Gaps = 39/584 (6%)
Query: 239 RTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIR 298
R +K + Y ++ L D +A + + +M G ++ ++V IG ++ E+
Sbjct: 422 RDQKGRCEYGVYLRSLDTDTLAALTILAVMSTFSRGGMEKGLKVSAVVSTIGKDLQDELI 481
Query: 299 IHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWG 358
+ L+K ++ A E + + ++ R R +++ K+ + + T W
Sbjct: 482 AEAALKKQAGADARRAKALKEMLAQRRQKDGRTRWQAMV--------YKMQQEDSTIVWP 533
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD------VRPAFRHRFKTILKHPGQKT 412
AK+G+ L+ LL E + PV D P + ++PAF+H ++
Sbjct: 534 PRVIAKVGAVLMSLLFEVG--KAPVTMED--PENKKKMVTMQPAFQHAYQITWG------ 583
Query: 413 TKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-G 470
+R G + P +++ + + +L ++PM+ P+ WKG GG+L S ++RT G
Sbjct: 584 -RRTGYLHLHPAIVKIIAKEPTADLLGRHLPMVCKPRPWKGSKDGGFLLYQSDLVRTTPG 642
Query: 471 SRKQQEALKS-VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND 529
Q +K+ + N ++++ LD LGST W VN+ VL+V+ W SG A +
Sbjct: 643 ESLQPTYIKTALENNGLEEIRRGLDNLGSTGWVVNRDVLNVMLEAWNSGEATANIAPLEP 702
Query: 530 VLIPEKPLSEDMT-EVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
L + + E +K W VR + HS RC ++ +AR ++ FY P
Sbjct: 703 DLPLPPKPAPEAGYEAEKEWDVLVRDIENRRSGLHSMRCFQNFQMELARAYRNST-FYLP 761
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGRAYP+ P+LN + +D RG+L F+E +PLG SGL+WLKI +ANL G +K S
Sbjct: 762 HNMDFRGRAYPLPPYLNQMGADNSRGLLLFSEAKPLGASGLKWLKIQIANL--SGFDKAS 819
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R F +HL ++ DSA+ ++G RWWL AEDP+QCLAAC L AL+ P S
Sbjct: 820 LSEREQFAMDHLDDVLDSADKGLHGKRWWLKAEDPWQCLAACCELRNALRHPDPTQYPSR 879
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LPIHQDGSCNGLQHYAALG +++ A VNL ++P+DVY+ +A V + + RD+ + S
Sbjct: 880 LPIHQDGSCNGLQHYAALGGDSIGAQQVNLEPSDRPSDVYTGVAEFVKKAVARDAAQGNS 939
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
AKIL ++ RK+VKQTVMT+VYGVTF+GA Q++++L
Sbjct: 940 T------AKILEGKITRKIVKQTVMTNVYGVTFMGAMRQVRKQL 977
>gi|353240452|emb|CCA72321.1| related to RPO41-DNA-directed RNA polymerase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 1283
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 216/625 (34%), Positives = 332/625 (53%), Gaps = 69/625 (11%)
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
R K R +++ + + LLP +K+ +I M +++ ++ +G + + + + IG A
Sbjct: 362 RRAKAHRKGEERTPISFFLRLLPPEKLTLICMLELLNMLASGGYEDGARTTRVLLSIGAA 421
Query: 293 IEQEIRIHSFLEKTK------NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQ 346
IE E H F K ++K K + ++ EL ++RV K++ +E
Sbjct: 422 IEAE---HHFQMAKKHDIPVPDFKSKSELPTYS--VAGYLELHKERV----KARLELEG- 471
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+ PW ++ +A++G+ + + L+E A V D + + AF + ++
Sbjct: 472 ---RENWMPPWTQEVRARVGAFVADALMEQAKVIQTKVINDVVHEEEQQAFYNAYRY--- 525
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSA--KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY 464
+ + GV++ + ++++ L R + + ++PM+V P+ W +N GGYL+
Sbjct: 526 ----ERGFKIGVIKMNDMIIDKLSREPPRERLHARHLPMVVRPRPWLRHNAGGYLYSNLS 581
Query: 465 VMRTHGSRKQQEALKSVTG-NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
VMR S +Q L+ M+ V+ LD LG T W+ L
Sbjct: 582 VMRMKESNEQTSYLREADSRGAMELVYAGLDVLGKTAWKATLAFLL-------------- 627
Query: 524 LVDRNDVLIPEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
L + IP PL DM + +++K HS RC T K+ +AR E+
Sbjct: 628 LTSNKRIQIP--PLDHTDMRAKADYAVAMKKLALEQAANHSDRCSTNYKMEIARTFLGEK 685
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY PHN+DFRGRAYP+ PHLNHL D+ RG+L FAEG+PLGK G+RWLKIHLANL+ G
Sbjct: 686 -FYLPHNVDFRGRAYPIPPHLNHLGDDLSRGLLLFAEGKPLGKRGIRWLKIHLANLY--G 742
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
+K + D R F HL EI+DSAENP+ G +WWL A+DP+QCLA C+ L AL+S +P
Sbjct: 743 YDKATFDDRETFSTEHLEEIYDSAENPLTGRQWWLKADDPWQCLATCMELRNALESPNPE 802
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
S LP+HQDG+CNGLQHYAALG + + A VNL ++P+DVY+ +A ++ +
Sbjct: 803 MYESCLPVHQDGTCNGLQHYAALGGDVIGARQVNLDVSDRPSDVYTYVA----KMAEAQI 858
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV-------------YGVTFVGAREQIKR 809
NKD + +A+ L ++ RKLVKQTV TS + VTF+GAR+QI +
Sbjct: 859 NKDAEGGHE--IAQKLQGRITRKLVKQTVRTSAKYSAETHQTTGHDHWVTFIGARDQIYK 916
Query: 810 RLEEKGHITDDRQLFAAACYAAKVS 834
+L+ + D L+ A Y AKV+
Sbjct: 917 QLKTFDDL-DGMDLYPWAIYLAKVT 940
>gi|68473800|ref|XP_719003.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
gi|68474009|ref|XP_718901.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440694|gb|EAK99997.1| hypothetical protein CaO19.13462 [Candida albicans SC5314]
gi|46440800|gb|EAL00102.1| hypothetical protein CaO19.6041 [Candida albicans SC5314]
Length = 1300
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 234/688 (34%), Positives = 339/688 (49%), Gaps = 83/688 (12%)
Query: 158 LYKRIKLQEYREMKKRK---FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP 214
+Y ++K +E R+ FNL R++Q+ E E +++K + + +KR NL
Sbjct: 355 MYSKLKTEEQRQAFNEALNVFNLERQKQI--EIRGIEGAKEKWKH-DFEESQKRGDLNLS 411
Query: 215 HIKGL---FLGWFGPLSEAIEREQKM---------------QRTKKQKAAYAPHIELLPA 256
KGL W + +E+E K+ K +A YAP I +
Sbjct: 412 --KGLNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKDRAMYAPFILKISP 469
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
DK +I + ++ L G R + +A +G AIE E RI
Sbjct: 470 DKAIIITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIG---------------- 513
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVM-EAQKLLK------NEETKPWGRDTQAKLGSRL 369
L K+ N L K + + QKL++ NE T W T+A++G L
Sbjct: 514 -----------LQAKKENKLFSQKHLSPQLQKLMRRTMQKGNESTPEWDDATRARIGGVL 562
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
V +L+ A V D PAF H + I R GV++ + L
Sbjct: 563 VSILMSVAKVNVRKETPQGLIEDFHPAFYHGMQFI-------AGNRVGVIKVHTDISNIL 615
Query: 430 DRSAKHMLI--PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNC 485
++ I +PMLV PK W + GG L+ + ++R S + + LK+ GN
Sbjct: 616 SGTSLTESIQPQALPMLVEPKPWNSFYGGGSLYSKTPLVRVKDSPETEAYLKAANERGN- 674
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTE 543
+ VFE L+ LG+T W VNK+V +V+ W SG + V L + P + D +
Sbjct: 675 LTGVFEGLNVLGNTAWTVNKKVFNVISHYWNSGEEFLSIPPVSEEPQLPQDIPGNSDPQK 734
Query: 544 VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ S +A SQRCD +L +AR E+ ++PHNLDFRGRAYP+ PH
Sbjct: 735 LLHHTTSKYQALDEYISNKSQRCDNNYRLEIARAFIGEK-LFFPHNLDFRGRAYPISPHF 793
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NHL D+ R + F +G+ LG+ GL WLKI LAN++ GV+K S R+ FV +L ++
Sbjct: 794 NHLGGDLTRSLFLFWDGKELGEEGLNWLKIQLANVY--GVDKESLAKRVEFVNENLEKVL 851
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
+SA +P WW AE P+Q L+ C L+EA K P +SHLP+HQDG+CNGLQHYA
Sbjct: 852 ESAADPFATDAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDGTCNGLQHYA 911
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + A VNL +KP DVY+ +A V +K D+ K LA L D++
Sbjct: 912 ALGGDVEGANQVNLNPSDKPQDVYTYVAKLVETRVKADAEKGDE------LAIFLQDKIK 965
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRL 811
RK+VKQTVMT+VYGVTF+GA EQI++++
Sbjct: 966 RKVVKQTVMTNVYGVTFIGAIEQIRKQI 993
>gi|395513402|ref|XP_003775309.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Sarcophilus harrisii]
Length = 925
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 213/617 (34%), Positives = 340/617 (55%), Gaps = 48/617 (7%)
Query: 215 HIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG 274
H+K L W L + + + +KQ+A+ P + LL +++ + L
Sbjct: 134 HLKDLKSQWEEALMKTFKETKIHMSKQKQQASLFPFLCLLKNKDYVDLMLQALFNL--PP 191
Query: 275 HEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL---LRK 331
H D + +V + +GM + + I ++ + K+ + +L+K+ +L L +
Sbjct: 192 HGDSLIHLV---MDLGMKVYNKNLIQMKMKPFVLDELKRKYMNYLHLLAKDTQLDSYLPR 248
Query: 332 RVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP-ADYSP 390
++S+ + + ++ K W +LG++LVE+++++ ++ P N + +
Sbjct: 249 EHWEALESETTICSDFFIQE---KVWPDVVLVQLGTQLVEIMVQSIHM--PTNLFSSQAE 303
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPP 447
+ P H + + + K+ G ++ P + + +A L +PML PP
Sbjct: 304 KKLIPVLYHVYSFL-------SVKQIGFIKPHPSFSQLVADAACTKLTFDSSVMPMLCPP 356
Query: 448 KKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
W + G Y+ P+ +MR G+ + Q+ L+S + V +AL+ LGS W+VN+
Sbjct: 357 MPWISPHFGAYILHPTKLMRCLDGTVQHQQLLESCPKQNLHAVLDALNQLGSCAWKVNQP 416
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIP--EKP------LSEDMTEVQKWKW--SVRKAKK 556
VL ++ SI+ S G+ + DV P E P LS+D + +K K + + K
Sbjct: 417 VLDLIISIFNSKGS-----KKLDVPPPLSEAPVPPSYQLSKDASSSEKAKLRREIAQCHK 471
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
+E +S R D KLS+A ++D+ F++PHN+DFRGR YP PH NHL SD+ R +L
Sbjct: 472 TAREMYSLRTDALYKLSIAHHLRDQI-FWFPHNMDFRGRTYPCPPHFNHLGSDMTRAILL 530
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
FAEG+PLG +GL WLKIHL NL +G +K S RLA+ L +I DSA+NP+ G +WW
Sbjct: 531 FAEGKPLGPNGLDWLKIHLINL-TGLKKKESLQARLAYANEILEDILDSADNPLTGRKWW 589
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+ ++P+Q LA C+ ++ A++S P + ISH PIHQDGSCNGLQHYAALGR+ + A +VN
Sbjct: 590 MDVDEPWQALACCMEIARAVRSPDPEAYISHFPIHQDGSCNGLQHYAALGRDVIGATSVN 649
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L+ + P DVYS +A V E+ KRD+ S +A++L + RKLVKQTVMT VY
Sbjct: 650 LMPCDVPQDVYSVVAQMVEELRKRDAAAGRS------IAQVLEGFISRKLVKQTVMTVVY 703
Query: 797 GVTFVGAREQIKRRLEE 813
GVT+ G R QI++RL+E
Sbjct: 704 GVTYYGGRLQIEKRLKE 720
>gi|238879434|gb|EEQ43072.1| hypothetical protein CAWG_01309 [Candida albicans WO-1]
Length = 1280
Score = 333 bits (855), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 235/688 (34%), Positives = 339/688 (49%), Gaps = 83/688 (12%)
Query: 158 LYKRIKLQEYREMKKRK---FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP 214
+Y ++K +E R+ FNL R++Q+ E E +++K + + +KR NL
Sbjct: 335 MYSKLKTEEQRQAFNEALNVFNLERQKQI--EIRGIEGAKEKWKH-DFEESQKRGDLNLS 391
Query: 215 HIKGL---FLGWFGPLSEAIEREQKM---------------QRTKKQKAAYAPHIELLPA 256
KGL W + +E+E K+ K +A YAP I +
Sbjct: 392 --KGLNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKDRAMYAPFILKISP 449
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
DK +I + ++ L G R + +A +G AIE E RI
Sbjct: 450 DKAIIITILELFKLHSTGGVVRGFRAYKAIQSVGKAIEAEYRIG---------------- 493
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVM-EAQKLLK------NEETKPWGRDTQAKLGSRL 369
L K+ N L K + + QKL++ NE T W T+A++G L
Sbjct: 494 -----------LQAKKENKLFSQKHLSPQLQKLMRRTMQKGNESTPEWDDATRARIGGVL 542
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
V +L+ A V D PAF H + I R GV++ + L
Sbjct: 543 VSILMSVAKVNVRKETPQGLIEDFHPAFYHGMQFI-------AGNRVGVIKVHTDISNIL 595
Query: 430 D-RSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNC 485
S + P +PMLV PK W + GG L+ + ++R S + + LK+ GN
Sbjct: 596 SGTSLTESIQPQALPMLVEPKPWNSFYGGGSLYSKTPLVRVKDSPETEAYLKAANERGN- 654
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL--VDRNDVLIPEKPLSEDMTE 543
+ VFE L+ LG+T W VNK+V +V+ W SG + V L + P + D +
Sbjct: 655 LTGVFEGLNVLGNTAWTVNKKVFNVISHYWNSGEEFLSIPPVSEEPQLPQDIPGNSDPQK 714
Query: 544 VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ S +A SQRCD +L +AR E+ ++PHNLDFRGRAYP+ PH
Sbjct: 715 LLHHTTSKYQALDEYISNKSQRCDNNYRLEIARAFIGEK-LFFPHNLDFRGRAYPISPHF 773
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NHL D+ R + F +G+ LG+ GL WLKI LAN++ GV+K S R+ FV +L ++
Sbjct: 774 NHLGGDLTRSLFLFWDGKELGEEGLNWLKIQLANVY--GVDKESLAKRVEFVNENLEKVL 831
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
+SA +P WW AE P+Q L+ C L+EA K P +SHLP+HQDG+CNGLQHYA
Sbjct: 832 ESAADPFATDAWWQKAEKPWQALSVCFELAEAYKLDDPTKFVSHLPVHQDGTCNGLQHYA 891
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + A VNL +KP DVY+ +A V +K D+ K LA L D++
Sbjct: 892 ALGGDVEGANQVNLNPSDKPQDVYTYVAKLVETRVKADAEKGDE------LAIFLQDKIK 945
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRL 811
RK+VKQTVMT+VYGVTF+GA EQI++++
Sbjct: 946 RKVVKQTVMTNVYGVTFIGAIEQIRKQI 973
>gi|50543664|ref|XP_499998.1| YALI0A12001p [Yarrowia lipolytica]
gi|49645863|emb|CAG83927.1| YALI0A12001p [Yarrowia lipolytica CLIB122]
Length = 1345
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 211/602 (35%), Positives = 324/602 (53%), Gaps = 56/602 (9%)
Query: 249 PHIELLPADKVAVIVMHKMMGL--VMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
P+++L+ ++++ + +MM L + + V+ +G A+E E R + EK
Sbjct: 482 PYLKLMSPKTMSIVTIIEMMRLQTTVGRSVESGVKTTNLVTSVGQALEIEYRCSQWSEK- 540
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WGRDTQAKL 365
L K++ L+K + L + +VME E+T P W D +AK+
Sbjct: 541 ---------------LGKKRTFLKK-LTGLKRRLKVMEMIHAEDLEDTVPAWAIDVRAKV 584
Query: 366 GSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
G+ LV++LI+ A + + PV A + DV P F H ++ + + +R G+V
Sbjct: 585 GALLVDILIKVARMPVTAKDPVTGASVTA-DV-PVFCHSYQLVKR-------QRLGMVRM 635
Query: 422 DPLVLE-------GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
L+++ G + S + ++PML PK W + GGY + VMR S +Q
Sbjct: 636 HDLMIQKVISTDIGAESSEAFVTPQFLPMLAEPKPWVAWKTGGYYVSQASVMRARESSEQ 695
Query: 475 QEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLI 532
L + + + ++F L+ LGST W VN +V ++ +W +G + N D +
Sbjct: 696 TAYLDTASERGDLDRLFAGLNKLGSTAWTVNSKVFDIMSKVWNTGEAYLDIPAVNTDNSL 755
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
PE P D +W+ + HS RCD+ KL +AR E+ ++PHN+DF
Sbjct: 756 PECPEHNDPVARSEWRKMCTVILNKRKSDHSVRCDSNYKLEIARAHLGEK-LHFPHNVDF 814
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGRAYP+ PH NHL SD+ RG+L+F G+ LG+ GLRWLKIH+ANL G K + D R+
Sbjct: 815 RGRAYPLSPHFNHLGSDLSRGLLQFWHGKELGEEGLRWLKIHMANLHGAG--KANFDDRV 872
Query: 653 AFVENHLYEIFDSAENPI-NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
F E+++ +I + ENP+ + W A+ P+Q LAA L A P +SH+P+
Sbjct: 873 KFTEDNMAKIRAAVENPLAEENSIWREADYPWQFLAASYELVAAYDLPDPSKFVSHIPVQ 932
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSKHP 770
QDGSCNGLQHYAALG + A VNL +KP DVY+E+A V E++K D+ N +P
Sbjct: 933 QDGSCNGLQHYAALGGDIDGARQVNLTPFDKPQDVYAEVASIVSELVKEDAENGNP---- 988
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830
LA L+ +++RK+VK TVMT+VYGVTF+GA+ QI+ +L+E+ D Q+ A Y
Sbjct: 989 ---LADFLVGKINRKIVKPTVMTNVYGVTFIGAKAQIQTQLKEQ--YGDVAQIDEMAHYL 1043
Query: 831 AK 832
A+
Sbjct: 1044 AQ 1045
>gi|403169890|ref|XP_003329308.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168465|gb|EFP84889.2| hypothetical protein PGTG_10360 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1409
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 201/515 (39%), Positives = 291/515 (56%), Gaps = 55/515 (10%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP-PDVRPAFRHRFKTILKHPGQKTTKR 415
W ++K+G+ ++ L+ET+ + D S +V+PAF ++T G KR
Sbjct: 597 WTIQQRSKVGALVMRGLLETSKITRSTVLEDGSVYEEVQPAF---YQTTQYFDG----KR 649
Query: 416 YGVVECDPLVLEGLDRSAKHM-LIP-YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
GV + + V E LD ++ L P Y+PM+ P W G YL + +MRT S +
Sbjct: 650 VGVTKMNEAVAERLDLDPANVSLHPRYLPMVCRPMPWTHPKNGAYLVHGAPLMRTRDSPE 709
Query: 474 QQ-EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND--V 530
Q L++ + ++ V++ALD LG+T W +N+ V + ++W G +AG+ R+
Sbjct: 710 QALHLLEAHRFHGLENVYKALDKLGNTPWNINRPVFDTMSTVWNQGIQLAGIPIRDPHLN 769
Query: 531 LIPEK--------------PLSEDMTEVQKWKWSVRKAKKIN------------------ 558
L P++ P S+D Q S ++ N
Sbjct: 770 LKPDQIEKLFFSPPPSSTTPASDDEHHDQLENQSSSSSQLENPRSEGEKKEIYRSLLASR 829
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ + QRC +L +AR +E FY+PHN+DFRGRAYP+ +LNH+ D+ RG+L+FA
Sbjct: 830 RSAYGQRCSVNYQLEIARAYLNET-FYFPHNIDFRGRAYPIPANLNHIGDDISRGLLKFA 888
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
E + LG+ GLRWLKIHL+N + G +K S D R F+E L +FDSA+ P+ G RWWL
Sbjct: 889 EEKELGEDGLRWLKIHLSNKY--GNDKASLDDRAKFIEERLELVFDSADRPLEGKRWWLE 946
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+EDP+Q LA C+ L+ AL+S P + S LP+HQDGSCNGLQHYAALG + VNLV
Sbjct: 947 SEDPWQTLAGCMELTAALRSPDPTAYRSSLPVHQDGSCNGLQHYAALGGDIDGGKEVNLV 1006
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
GEKP DVYS++AV V +++ D+ +AK L + RK+VKQTVMT+VYGV
Sbjct: 1007 PGEKPGDVYSKVAVEVAKLVDFDAANGHD------IAKALKGHIKRKVVKQTVMTTVYGV 1060
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
TFVGAREQIKR+L++ G + L+ +A Y A +
Sbjct: 1061 TFVGAREQIKRQLKDLG-VIPIPNLYISAAYVATL 1094
>gi|260942581|ref|XP_002615589.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
gi|238850879|gb|EEQ40343.1| hypothetical protein CLUG_04471 [Clavispora lusitaniae ATCC 42720]
Length = 1311
Score = 332 bits (850), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 215/616 (34%), Positives = 331/616 (53%), Gaps = 61/616 (9%)
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
++ E+K Q K ++ YAP++ L+P K++VI + +++ L G ++ +A + +
Sbjct: 445 SLSSEEKKQM--KDRSFYAPYLVLIPPKKLSVITILELLKLNSTGGIVDGMRTARAVISV 502
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
G AIE E YK + ++A EK L ++ S + K+++ +K
Sbjct: 503 GKAIELE------------YKSQGLVA-------AEKRFLGRKAKSSNQWKKILRNRKPS 543
Query: 350 KNEE--TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP----PDVRPAFRHRFKT 403
+E + W AKLGS L LL+ A V PV D + +PAF H ++
Sbjct: 544 GDEAGLSTEWDYPVYAKLGSVLTSLLLHVAKV--PVTGTDPTTGKQVKGKQPAFHHTYQF 601
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPP-----KKWKGYNKGGY 458
+ +R G+++ +++ L A + LI V + P W +N+GGY
Sbjct: 602 V-------NGQRLGIIKLHKNLVKQL---ASNTLINSVQPQLLPMLLPPSDWTSHNQGGY 651
Query: 459 LFLPSYVMRTHGSRKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
F PS ++R S + +K+ + N + V+ L+ LG T W +N +VL V+ W +
Sbjct: 652 RFTPSTLVRIKDSAETVAYVKAASEANNLDDVYRGLNVLGHTPWTINAKVLEVISQYWNT 711
Query: 518 GG---NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
G +I +VD ++ P +E + +V+ ++ VR SQRCDT KL +
Sbjct: 712 GEAFLDIPPVVDEPELPPPLPLNAEPLEKVE-YQRKVRHVLNEAAAYRSQRCDTNYKLEI 770
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
AR E+ Y+PHN+DFRGRAYP+ PHLNHL +D+ R + F EGR LG+ GL WLKIH
Sbjct: 771 ARAFVGEK-MYFPHNVDFRGRAYPLPPHLNHLGNDLTRSLFLFWEGRELGERGLEWLKIH 829
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
LAN++ G++K R FV+++L +F+SA +P GS+WW E P+Q L+ C L E
Sbjct: 830 LANVY--GMDKAPLAQRAQFVDDNLEHVFESARDPTGGSKWWTKGEKPWQVLSVCFELLE 887
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
A K P +SH+P+HQDG+CNGLQHYAALG + A VNLV ++P DVY +A V
Sbjct: 888 AYKLDDPTKYVSHVPVHQDGTCNGLQHYAALGGDIEGAKQVNLVPADRPQDVYKFVAGLV 947
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+ ++ ++ A L ++ RK+VKQTVMT+VYGVTFVGA QI+++L
Sbjct: 948 EKRLQAEAEAGNK------YAIFLQGKISRKVVKQTVMTNVYGVTFVGAVAQIEKQL--- 998
Query: 815 GHITDDRQLFAAACYA 830
GH+ + + YA
Sbjct: 999 GHLFEKDDYDSVTLYA 1014
>gi|451993672|gb|EMD86144.1| hypothetical protein COCHEDRAFT_1198114 [Cochliobolus heterostrophus
C5]
Length = 1432
Score = 331 bits (849), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 212/660 (32%), Positives = 330/660 (50%), Gaps = 55/660 (8%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAP--NLPHIKGLFLGWFGPL----SEAIERE 234
RQ++ E + E V +K + K+ E + N I+ + GW+ L + IE
Sbjct: 375 RQIQMEQDGVEAAVKRWKAEDEKLQEIGIHGIMNKKPIQAIMYGWYTALVPLFKKRIEDA 434
Query: 235 QKM------QRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG--HEDRCVQVVQAA 286
+K+ T+ Y +E +K+A I + + + G + +++ +
Sbjct: 435 KKVLLEPPKATTRDDAHEYGVWLERCTPEKLAAITVARATSSAVKGKGEDSSALKIASLS 494
Query: 287 VHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ +G I E + R +FL+K + R +++ L K V S
Sbjct: 495 IAVGNDIQDYLNAETQTRRDAFLKKQRKQTRLNLVS-----------TLAKSVASSSAET 543
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRPAFR 398
A+ + E + KLG+ +E L+++A V +P S AF
Sbjct: 544 ETQSAKSSIFEFEKVDMPLSARTKLGAMCIEHLLQSATLVVTAKDPRTGKSVSRSMAAFH 603
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGYNKGG 457
H+ G K+ G + +++ + + H + +PM+V PK W + GG
Sbjct: 604 HQI-------GFHQGKKLGFLVPHHELMDKMRTDSVHSIQTVRLPMVVEPKPWSSFEDGG 656
Query: 458 YLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y +P ++R G Q A ++ M KV LD LG W++N V V+ W
Sbjct: 657 YYTVPQKIVRQKGGDSAQRAYAQLAIENGDMFKVMAGLDVLGKVPWQINAPVFDVMARAW 716
Query: 516 VSGGNIAGLVDRNDVLI---PEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+G +I LV + + P +P +E E +W ++++ + HSQRC +
Sbjct: 717 NAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGLHSQRCFQNFQ 776
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SD+ RG+L+FA G+ LG GL+WL
Sbjct: 777 LETARAYANEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGKELGTVGLQWL 836
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R F +H+ EI DSA P+ G RWW AEDP+QCLA CI
Sbjct: 837 KIHLANLY--GFDKASLREREQFTMDHMSEICDSASQPLEGQRWWTKAEDPWQCLACCIE 894
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L A P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 895 LKNAFDLPDPTRFVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVA 954
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V E++ +D+NK +A + + RK+VK+TVMT+VYGVTF+GA++Q++ L
Sbjct: 955 ELVQEMVAKDANKG------LPVANFIDGHISRKVVKRTVMTNVYGVTFIGAKQQVQDEL 1008
>gi|344304552|gb|EGW34784.1| hypothetical protein SPAPADRAFT_47865 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1287
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 226/686 (32%), Positives = 355/686 (51%), Gaps = 81/686 (11%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQ-----VKQETEAWERMVDEYKELEAKMIEKRL 209
+Y+ ++ QE R+ FNL R++Q V+ E W+ +E K+ ++ M K L
Sbjct: 348 MYQLLETQEQRDQFNHALANFNLDRQKQMEIRGVEGAKEKWKHEYEETKKRDSIMSTKNL 407
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQK-------------MQRTKKQKAAYAPHIELLPA 256
L W+ L +++E++ K++A YAP +
Sbjct: 408 NAQL-------YEWYQKLVPLLQKERQECLDLIDDKATNQKSSENKERAVYAPFFVKIDP 460
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
+K A+ + ++M L G ++ + A +G A+E + I L K K+ KR +
Sbjct: 461 EKAAMTTILEVMKLQSTGGISNGMRALTALQSVGKALEYDY-ITQKLSK-KDLKRTQT-- 516
Query: 317 DTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIET 376
SK K S + V A + NE+ W +D +LG+ V L+E
Sbjct: 517 ------SKHK-------GSRLLLNLVRNAAEGDPNEDFG-WSQDISIRLGAVFVSFLMEV 562
Query: 377 AYVQ---HPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
A V+ H V + AF H + I GQ R G ++ +++ ++RS+
Sbjct: 563 AKVRVSRHTVETE-------QSAFFHSIQYI---GGQ----RIGAIKLHSDLVKSINRSS 608
Query: 434 KHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVF 490
+ ++PM V PK W GY G + P ++R S + +K+ N + +V+
Sbjct: 609 LDSCVQPQHMPMPVKPKDWDGYYGRGQVMSP--LVRVRDSPETAAYVKTAARNGNLDQVY 666
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
L+ LG+T W VNK + V+ W +G +I G++D+ +L P+ S+D + K+
Sbjct: 667 AGLNVLGNTAWTVNKDIFKVISHYWNTGKEFLDIPGVLDK-PILPPKPERSDDPSIKYKY 725
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+ V + K SQRCD KL +AR E+ Y+PHNLDFRGRAYP+ PH NHL
Sbjct: 726 RKLVTQLKSEFSTMRSQRCDANYKLEIARAFIGEK-LYFPHNLDFRGRAYPISPHFNHLG 784
Query: 608 SDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+ R + F +G+ LG+ GLRWLKI LANL+ G +K D R+ FVE++L +F+SA+
Sbjct: 785 GDMTRSLFLFWDGKELGERGLRWLKIQLANLY--GFDKAPFDERVKFVEDNLQNVFESAK 842
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
NP + WW A+ P+Q L C +L A K P +SH+ +HQDG+CNGLQHYAALG
Sbjct: 843 NPYSEDAWWKKADKPWQALGVCFDLRRAYKLPDPTKYVSHMAVHQDGTCNGLQHYAALGG 902
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+ A VNL ++P DVY+ +A V E++++D+ K+ A L D+++RK+V
Sbjct: 903 DLEGAQQVNLARADRPQDVYAYVAGIVRELLEKDAQKNNK------YALFLKDKINRKVV 956
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEE 813
K TVMT+VYGVT++GA Q++++LE+
Sbjct: 957 KPTVMTNVYGVTYIGALAQVRKQLED 982
>gi|330914797|ref|XP_003296788.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
gi|311330907|gb|EFQ95107.1| hypothetical protein PTT_06972 [Pyrenophora teres f. teres 0-1]
Length = 1430
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 222/660 (33%), Positives = 328/660 (49%), Gaps = 55/660 (8%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRL--APNLPHIKGLFLGWFGPLSEAIER----- 233
RQ++ E + + V +K+ K+ + + N I+ + W+ L A ++
Sbjct: 368 RQLQMEQDGMDAAVKRWKQENEKLQDLGVHGVMNTKPIQAMMYSWYKALVPAFKKRIEHA 427
Query: 234 -----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVM--AGHEDRCVQVVQAA 286
E K++ +Y +E +K+A I + + + G ++ ++V +
Sbjct: 428 KKVLSESAKDMMKEEVNSYGVWLERCKPEKLAAITVARTTQAAVRNKGEDNSALKVSSLS 487
Query: 287 VHIGMAI------EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
IG I E + R +FL+K +RK+ D LSK V+ +
Sbjct: 488 TSIGGEIQDYLDSESQARRDAFLKK----QRKQTRLDLFSKLSKNPS-----VSQTESGQ 538
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFR 398
R E+ L + E + KLG+ +E L+ A + R AF
Sbjct: 539 R--ESIASLDSFEKTTIPLQARTKLGAMCLENLLSCATLTVTAKDPRTGEEKSRSMAAFH 596
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNKGG 457
H+ G K+ G + VL L + H + +PM++ PK W + GG
Sbjct: 597 HQV-------GFHQGKKLGFIVPHHEVLAKLRTESVHSIHNVRLPMVIEPKPWSSFEDGG 649
Query: 458 YLFLPSYVMRTHGSRKQQEAL--KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
Y +P V+R G Q A ++ M KV LD LG W++N V V+ W
Sbjct: 650 YYTIPQKVVRQKGGDSSQRAYAQSAIENGDMSKVMAGLDVLGRVPWQINAPVFDVMARAW 709
Query: 516 VSGGNIAGLVDRNDVLIPEKPLS--EDMTEVQKWKWSVRKAKKINQ--ERHSQRCDTELK 571
+G ++ L+ V E+P D T ++ KW + N HSQRC +
Sbjct: 710 NAGESLGSLIGEKAVAALERPKEPPADATYQERAKWGKALKEYDNHIGGLHSQRCFQNFQ 769
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SDV RG+L+FA G+ LG GL+WL
Sbjct: 770 LETARAFLNEKKIYFPHSVDFRGRAYPIPPILNHIGSDVARGLLKFAHGKELGTVGLQWL 829
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIHLANL+ G +K S R F ++L EI DSA NP++G RWW AEDP+QCLA CI
Sbjct: 830 KIHLANLY--GFDKASLREREQFAMDNLDEIRDSASNPLDGRRWWAKAEDPWQCLACCIE 887
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
L AL S P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A
Sbjct: 888 LKSALDSPDPTRFLSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVA 947
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V E++ +D+ K LAK + + RK+VK+TVMT+VYGVTF+GA+EQ+ L
Sbjct: 948 ELVKEMVSKDAAKGSE------LAKFVDGHISRKVVKRTVMTNVYGVTFMGAKEQVHDEL 1001
>gi|89029825|gb|ABD59451.1| mitochondrial single-subunit RNA polymerase [Acanthamoeba
castellanii]
Length = 512
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/333 (50%), Positives = 224/333 (67%), Gaps = 12/333 (3%)
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
+ +N ++ V+ W +GG IA L R ++ L P D+ QK+ +KAK N
Sbjct: 4 FSINNRMHEVICEAWDNGGGIADLPSRTNLPELEPPADYYSDLEVKQKFDRERKKAKIAN 63
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
HS RCD KL VA+ +D FYYPHN+DFRGR YP+ PHLNHL D+CRG+L FA
Sbjct: 64 YNLHSLRCDVTYKLQVAKECQDRT-FYYPHNMDFRGRTYPIPPHLNHLGQDLCRGLLTFA 122
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
EG+PLG+SGLRWLK+HLAN+F G +K++ + R+ FVEN++ I DSA NP+ G RWWL
Sbjct: 123 EGKPLGESGLRWLKVHLANVF--GNDKITFEDRVRFVENNMEHIMDSASNPLGGQRWWLK 180
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A+ P+QCLAA I L A S P + +S LPIHQDGSCNGLQHYAALG + + A VNL+
Sbjct: 181 ADKPWQCLAASIELINAYNSGQPETYVSTLPIHQDGSCNGLQHYAALGGDEMGARQVNLL 240
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGV 798
E+P DVYS + E++ R D + + +A+ L+ +VDRK++KQTVMTSVYGV
Sbjct: 241 PSERPQDVYSGVV----ELVVRRLEDDAANGVE--IAQRLLGKVDRKVIKQTVMTSVYGV 294
Query: 799 TFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
TF+GAR+QI+ L++KG ++DD +F A+ Y A
Sbjct: 295 TFIGARQQIENALKDKGKVSDD-DMFLASRYLA 326
>gi|169621404|ref|XP_001804112.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
gi|111057416|gb|EAT78536.1| hypothetical protein SNOG_13911 [Phaeosphaeria nodorum SN15]
Length = 1542
Score = 330 bits (845), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 239/404 (59%), Gaps = 13/404 (3%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
K+ G + P ++ L + + + P +PM+V PK W + GGY P V+R
Sbjct: 617 KKIGYLSPHPELVGKLRKDSVANIQPVNLPMIVEPKPWTSFQDGGYYTQPQRVVRQKAGD 676
Query: 473 KQQEAL--KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
Q A ++ M KV LD LG W++N +L V+ W G IAGL+ N
Sbjct: 677 PAQRAYAESAIENGDMAKVLAGLDVLGKVPWQINAPILEVMLQAWNKGEGIAGLIPENHG 736
Query: 531 LIP--EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
L P E P E KW +++ + + HSQRC +L +AR E+ Y+PH
Sbjct: 737 LEPPVEPPADAPRVERAKWAKKLQEHENLKSGLHSQRCFQNFQLEIARAFAAEKKIYFPH 796
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
++DFRGRAYP+ P LNH+ +D+ RG+L+FA G+ LG GL WLKIHLANL+ G +K S
Sbjct: 797 SVDFRGRAYPLSPVLNHIGADLARGLLKFANGKELGTVGLHWLKIHLANLY--GYDKASL 854
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R F ++L +I+DSA NP++G RWWL AEDP+QCLA C+ L A S+ P S
Sbjct: 855 KEREQFAMDNLSDIYDSATNPLDGRRWWLNAEDPWQCLACCMELKNAFDSADPTRYKSQF 914
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDG+CNGLQHYAALG + A VNL ++P D+Y+ +A V ++K+D+ K
Sbjct: 915 PVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYTGVAELVKGMVKKDAEKGVD- 973
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+AK + ++ RK+VK+TVMT+VYGVTF+GA++Q++ L+
Sbjct: 974 -----VAKFVDGRITRKVVKRTVMTNVYGVTFMGAKKQVEDELK 1012
>gi|451856581|gb|EMD69872.1| hypothetical protein COCSADRAFT_32528 [Cochliobolus sativus ND90Pr]
Length = 1438
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 215/663 (32%), Positives = 329/663 (49%), Gaps = 61/663 (9%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRL--APNLPHIKGLFLGWFGPL----------S 228
RQ++ E + E V +K + KM E + N I+ + GW+ L +
Sbjct: 380 RQIQMEQDGMEAAVKRWKAEDEKMQEIGIHGVMNTKSIQAMMYGWYTALVPLFKKRIEHA 439
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM--GLVMAGHEDRCVQVVQAA 286
+ + E T+ Y +E +K+A I + + + G + +++ +
Sbjct: 440 KQVLLEPPKATTRDDAHEYGVWLERCKPEKLAAITVARSTQSAVKGKGEDSSALKIAALS 499
Query: 287 VHIGMAIEQ------EIRIHSFLEKTKNYKRKKII---ADTEEVLSKEKELLRKRVNSLI 337
+ +G IE + R +FL+K + R ++ A + S EK+ + N L
Sbjct: 500 IAVGNDIEDYLNAETQTRRDAFLKKQRKQTRLNLVSTLAKSGSTSSTEKQPQSAKSNMLE 559
Query: 338 KSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETA-YVQHPVNP-ADYSPPDVRP 395
K M + KLG+ +E L+++A V +P S
Sbjct: 560 FEKVHMPLS--------------ARTKLGAMCIEQLLQSATLVVTAKDPRTGKSVSRSMA 605
Query: 396 AFRHRFKTILKHPGQKTTKRYG-VVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYN 454
AF H+ G K+ G +V L+ + S + +PM+V PK W +
Sbjct: 606 AFHHQV-------GFHQGKKLGFLVPHHELMAKMRTDSVHSIQTVRLPMVVEPKPWSSFE 658
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
GGY +P ++R G Q A ++ M KV LD LG W++N V V+
Sbjct: 659 DGGYYTVPQKIVRQKGGDTAQRAYAQLAIENGDMSKVMAGLDVLGKVPWQINAPVYDVMA 718
Query: 513 SIWVSGGNIAGLVDRNDVLI---PEKPLSE-DMTEVQKWKWSVRKAKKINQERHSQRCDT 568
W +G +I LV + + P +P +E E +W ++++ + HSQRC
Sbjct: 719 RAWNAGESIGSLVGEDAITSLKRPSEPSAEASFQERSRWNKALQEYEDTIGGLHSQRCFQ 778
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
+L AR +E+ Y+PH++DFRGRAYP+ P LNH+ SD+ RG+L+FA G+ LG GL
Sbjct: 779 NFQLETARAYVNEKKIYFPHSVDFRGRAYPIPPILNHIGSDLSRGLLKFAHGKELGAVGL 838
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
+WLKIHLANL+ G +K S R F +H+ EI DSA P+ G RWW AEDP+QCLA
Sbjct: 839 QWLKIHLANLY--GFDKASLREREQFAMDHMSEICDSASQPLEGQRWWTKAEDPWQCLAC 896
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
CI L A P +S LP+HQDG+CNGLQHYAALG + A VNL ++P D+Y+
Sbjct: 897 CIELKNAFDLPDPTRFVSQLPVHQDGTCNGLQHYAALGGDHAGARQVNLEPSDRPQDIYT 956
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+A V E++ +D++K LA + + RK+VK+TVMT+VYGVTF+GA++Q++
Sbjct: 957 GVAELVKEMVAKDASKG------VPLANFIDGHISRKVVKRTVMTNVYGVTFMGAKQQVQ 1010
Query: 809 RRL 811
L
Sbjct: 1011 DEL 1013
>gi|300120043|emb|CBK19597.2| unnamed protein product [Blastocystis hominis]
Length = 595
Score = 328 bits (842), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 175/390 (44%), Positives = 243/390 (62%), Gaps = 11/390 (2%)
Query: 426 LEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC 485
L+ D + I Y PMLVPP+ W + GG++ + MRTHGS+ Q + L
Sbjct: 12 LDQGDSRGEISFIRYKPMLVPPRPWLSVDSGGFISQKTVFMRTHGSKLQTDCLYQAD--- 68
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545
+ VF +L+ LG W +NK VL V E++W +GG + R D+ +P+ SE +E +
Sbjct: 69 LTSVFRSLNILGKVGWVINKDVLKVAEAVWENGGGELDIPSRTDLKMPDP--SEFESE-K 125
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
K++ ++ K K+ N + HS RCD KL +AR +++ Y+P NLDFRGR YP+ PHLNH
Sbjct: 126 KYRKAMMKIKQKNYDLHSLRCDLGYKLDIAREFQNDT-IYFPMNLDFRGRVYPIPPHLNH 184
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +D+CRG+L FA +PLG+ GL WLKI +ANL+ G +K+S D R +V+ HL I +S
Sbjct: 185 LGNDLCRGLLSFARKKPLGERGLFWLKIQVANLY--GNDKISFDDRSKWVDEHLPAIRES 242
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
NP+ + WW +DP+Q LA C+ A+ S P + +S++P+HQDGSCNGLQHYAAL
Sbjct: 243 VRNPLAPNAWWKEGDDPWQLLATCMEYIRAIDSPHPEAYLSNIPVHQDGSCNGLQHYAAL 302
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD-SNKDPSKHPQALLAKILIDQVDR 784
G + VNLV KP DVYS + V E + D N D S A L + ++V+R
Sbjct: 303 GLDKTGGTQVNLVPSSKPGDVYSAVLRIVKERIHEDLRNPDASIRAMAELLRG-GEEVNR 361
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
K+VKQTVMTSVYGVTFVGAREQI+ +L +
Sbjct: 362 KVVKQTVMTSVYGVTFVGAREQIEGQLNAR 391
>gi|326678540|ref|XP_685138.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Danio rerio]
Length = 1248
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 193/502 (38%), Positives = 282/502 (56%), Gaps = 44/502 (8%)
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-K 411
+ PW +LGS LV+L++ +Q + + PA + IL H +
Sbjct: 575 DDTPWPMILMVQLGSFLVDLMVHELKIQSNI---------LNPALEKKLIPILYHMYTFR 625
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLI--PYV-PMLVPPKKWKGYNKGGYLFLPSYVMR- 467
+ + G ++ P++ L + + L YV PML PP W G YL P+ +MR
Sbjct: 626 SNHKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRA 685
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
+ G+ + Q L+ + V ++L+ +GS W++NK +L ++ SI+ G+
Sbjct: 686 SDGAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGS------- 738
Query: 528 NDVLIPEKPLSE------------DMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLS 573
D L PLSE T+V+K K KAKK+ E HS R D KLS
Sbjct: 739 -DKLSIPPPLSEAPEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLS 797
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A ++D+ F++PHN+DFRGR YP+ P+ NHL SDV R +L FAEGRPLG GL WLKI
Sbjct: 798 IANHVRDK-IFWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKI 856
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HL NL +G ++ S DGRL + E+ + +I DSA++P++G +WW+ A++P+Q LA C+ ++
Sbjct: 857 HLVNL-TGLKKQSSLDGRLEYAESIMEDILDSADHPLDGRKWWMNADEPWQALACCMEIA 915
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A +S H IS+ P+HQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +
Sbjct: 916 NASRSPDHHKFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCALPQDVYSGVAKQ 975
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E RD+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 976 VEEFRVRDAERGLK------IAQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKE 1029
Query: 814 KGHITDDRQLFAAACYAAKVSN 835
D A+ +V N
Sbjct: 1030 IDDFPKDYVWDASHYLVVQVFN 1051
>gi|432853790|ref|XP_004067873.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Oryzias
latipes]
Length = 1366
Score = 325 bits (834), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 192/491 (39%), Positives = 285/491 (58%), Gaps = 44/491 (8%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ ++T W +LG+ LV+++++ + + + P+ + IL H
Sbjct: 692 LQGDDTS-WPHIVTLELGTHLVDIMVKNLKINSDI---------LNPSQDRKLIPILYHM 741
Query: 409 GQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI--PYV-PMLVPPKKWKGYNKGGYLFLPSY 464
++T++ G ++ P++++ + + L YV PML PP W G Y+ P+
Sbjct: 742 YTFRSTRQVGFIKPHPILVQMQQEAMETRLTFDSYVMPMLCPPVPWTSVKFGAYVLTPTK 801
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+MRT Q E L + + ++ VF++L+ LG+ W++NK +L ++ SI+ G+
Sbjct: 802 LMRTVEGATQHEQLLEKSQH-LEPVFDSLNQLGNCAWKINKPLLDIIISIFNDRGS---- 856
Query: 525 VDRNDVLIPE---------KPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLS 573
D+ D+ P P T QK K V AKK E HS R D KLS
Sbjct: 857 -DKLDIPPPMSEAPKIPHFNPQDPAYTASQKALMKREVINAKKKGSEMHSLRMDALYKLS 915
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A M+ EE F++PHN+DFRGR YP P+ NHL SDV R +L FAEG+PLG GL WLKI
Sbjct: 916 IAHHMR-EETFWFPHNMDFRGRTYPCPPYFNHLGSDVTRAMLVFAEGKPLGPKGLDWLKI 974
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
HL NL +G ++ S GRL + + + +I DSA+NP++G +WW+ A++P+Q LA C+ ++
Sbjct: 975 HLVNL-TGLKKRSSLQGRLQYANSIMEDILDSADNPLHGRKWWMNADEPWQALACCMEIA 1033
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A +S P +SH P+HQDGSCNGLQHYAALGR+ + A +VNLV + P DVYS +A +
Sbjct: 1034 RAARSPDPAKFVSHFPVHQDGSCNGLQHYAALGRDVIGATSVNLVPCDVPQDVYSGVAQQ 1093
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E+ RD+ +D K +A++L + RK+VKQTVMT VYGVT G R QI++RL+E
Sbjct: 1094 VEELRARDA-RDGLK-----IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKE 1147
Query: 814 -----KGHITD 819
K HI D
Sbjct: 1148 IENFPKEHIWD 1158
>gi|260830109|ref|XP_002610004.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
gi|229295366|gb|EEN66014.1| hypothetical protein BRAFLDRAFT_287284 [Branchiostoma floridae]
Length = 804
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 181/492 (36%), Positives = 284/492 (57%), Gaps = 41/492 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W + LGS LV+ ++ + + + S + PA H + + K+
Sbjct: 134 WPINLIINLGSLLVDAMVREVKIDNNLF-RKTSEQKLIPALYHMYTY-------RNIKQV 185
Query: 417 GVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
G+++ P++++ ++ + L+ +PML+PP W KGG+L P+ +MR++ +
Sbjct: 186 GIIKPHPMLVQLVEGAQDTSLVFDSSLLPMLMPPVPWSSVKKGGFLLSPTKLMRSNDATL 245
Query: 474 QQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
Q E L G + + ++L+ LG+ W++N+ +L ++ ++ + G+ ++ I
Sbjct: 246 QHELLLEKVGTSELYPILDSLNQLGACAWKINQPILDLVIRVFNNKGS-------KELDI 298
Query: 533 PEKPLSEDMT------------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
P+ P+SE T + Q + + + +K+ E HS R D KLS+A R +
Sbjct: 299 PQ-PVSEAPTFPKLGTEILTNGDKQAMRKQMAQVRKLRSEMHSLRMDMLYKLSIANRFR- 356
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E FY+PHN+DFRGR YP PH NHL SDV R +L FAEGRPLG+ GL WLKIHL NL +
Sbjct: 357 HEIFYFPHNMDFRGRVYPCPPHFNHLGSDVARSILVFAEGRPLGEKGLEWLKIHLVNL-T 415
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G +K S RL + + EIFDSA++P+ G +WW+TA++P+Q LA C+ ++ A++S
Sbjct: 416 GFKKKNSQMERLEYANEMMEEIFDSADDPMTGHKWWMTADEPWQALACCMEIANAVRSPD 475
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + +SH P+HQDGSCNGLQHYAALGR+ A VNL+ E P DVYS +A +V ++ +
Sbjct: 476 PQAYVSHFPVHQDGSCNGLQHYAALGRDITGAHQVNLMPAESPQDVYSGVARQVEKLRAK 535
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
D+ + +A++L + RK+VKQTVMT VYGVT G R QI+R+L++ D
Sbjct: 536 DAEEG------VKVAQVLDGFIKRKVVKQTVMTVVYGVTRYGGRLQIQRQLKDIPDFPQD 589
Query: 821 RQLFAAACYAAK 832
++ A+ Y K
Sbjct: 590 -HVWEASGYLVK 600
>gi|402903464|ref|XP_003914585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Papio anubis]
Length = 1226
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 199/592 (33%), Positives = 318/592 (53%), Gaps = 38/592 (6%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K + + P + LL +V I++ + L G + +A + Q R+
Sbjct: 455 KGRFSLYPFLCLLDEREVVRILLQVLQALPAQGESFTTLARELSARTFSRHVVQRRRLSG 514
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
++ + Y RK + VL+ + +V + ++ EA + +PW
Sbjct: 515 QVQALETYYRKYL-----HVLASDT-----KVPNPCLPRQYWEALGAPEALREQPWPLPV 564
Query: 362 QAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
Q +LG +L E+L++ + ++ + + + P H + + ++ G+++
Sbjct: 565 QMELGKQLAEMLVQATRMPSSLD-SQHGSSRLVPVLYHVYSF-------RNVQQIGILKP 616
Query: 422 DPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEA 477
P ++ L+ +A+ L VPML PP W + G +L P+ +MRT G+ + QE
Sbjct: 617 HPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEGATQHQEL 676
Query: 478 LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK-- 535
L++ + +AL LG+ WRVN +VL ++ ++ + G V P+
Sbjct: 677 LETCPPAALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAPASEAPQPAE 736
Query: 536 ---PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
P S + + + + +K+ +E HS R + +LS+A+ ++ F+ PHN+DF
Sbjct: 737 AHLPQSAAPARKAELRRELARCQKMAREMHSLRAEARYRLSLAQHLRGRV-FWLPHNMDF 795
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RL
Sbjct: 796 RGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLNWLKIHLVNL-TGSKKREPLRKRL 854
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
AF E + +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A++SS P + +SHLP+HQ
Sbjct: 855 AFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRSSDPAAYVSHLPVHQ 914
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 915 DGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAERGTQ----- 969
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+A++L + RK+VKQTVMT VYGVT G R QI++RL E +TD Q F
Sbjct: 970 -VAQMLEGFITRKVVKQTVMTVVYGVTHYGGRLQIEKRLRE---LTDFPQEF 1017
>gi|410209414|gb|JAA01926.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410265918|gb|JAA20925.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
gi|410349645|gb|JAA41426.1| polymerase (RNA) mitochondrial (DNA directed) [Pan troglodytes]
Length = 1230
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 197/575 (34%), Positives = 310/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQILQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + V +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1016
>gi|348504337|ref|XP_003439718.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Oreochromis niloticus]
Length = 1352
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 186/483 (38%), Positives = 275/483 (56%), Gaps = 45/483 (9%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ ET W +LG+ +V+++++ + + + PA+ + IL H
Sbjct: 659 LQGGETS-WPYIVTLELGTYMVDMMVKNLKINSDI---------LNPAYDRKLIPILYHM 708
Query: 409 GQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI--PYV-PMLVPPKKWKGYNKGGYLFLPSY 464
++T++ G ++ P++ + + + L YV PML PP W G YL P+
Sbjct: 709 YTFRSTRQIGFIKPHPILTQMQQEAMETKLTFDSYVMPMLCPPVPWTSVKFGAYLLTPTK 768
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+MRT Q E L N + ++++L+ LG+ W++NK +L ++ SI+ G+
Sbjct: 769 LMRTVDGATQHEELLEKCQN-LHAIYDSLNQLGNCAWKINKPLLDIIISIFNDRGS---- 823
Query: 525 VDRNDVLIPEKPLSE--------------DMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
D+ D+ PLSE +E K V AKK E HS R D
Sbjct: 824 -DKLDI---PPPLSEAPKIPHFNPQDPTYTASEKAHMKRQVINAKKKCSEMHSLRMDALY 879
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLS+A M+DE F++PHN+DFRGR YP P+ NHL SDV R +L FAEG+ LG GL W
Sbjct: 880 KLSIANHMRDEI-FWFPHNMDFRGRTYPCPPYFNHLGSDVTRAILMFAEGKLLGPKGLDW 938
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G ++ S GRL + + +I DSA+NP+NG +WW+ A++P+Q LA C+
Sbjct: 939 LKIHLVNL-TGLKKRSSLQGRLEYANTIMEDILDSADNPLNGRKWWMNADEPWQALACCM 997
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++S P IS+ P+HQDGSCNGLQHYAALGR+ + A +VNL+ + P DVYS +
Sbjct: 998 EIANAVRSPDPTQFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCDVPQDVYSGV 1057
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V E+ RD+ +A++L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 1058 AQQVEELRARDAESGLK------IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 1111
Query: 811 LEE 813
L+E
Sbjct: 1112 LKE 1114
>gi|71052166|gb|AAH98387.1| Polymerase (RNA) mitochondrial (DNA directed) [Homo sapiens]
Length = 1230
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 310/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHHSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1016
>gi|119581581|gb|EAW61177.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Homo
sapiens]
Length = 1021
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 309/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 361 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 420
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 421 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 470
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 471 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 521
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 522 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 581
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 582 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 641
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 642 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 700
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 701 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 759
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 760 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 819
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 820 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 873
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 874 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 908
>gi|354543834|emb|CCE40556.1| hypothetical protein CPAR2_105920 [Candida parapsilosis]
Length = 1292
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 227/704 (32%), Positives = 360/704 (51%), Gaps = 74/704 (10%)
Query: 158 LYKRIKLQEYREMKK---RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL- 213
+YKR++ E RE +FN R+RQ+ E E +++K + + +KR NL
Sbjct: 345 IYKRLQTDEQREKYNAALEEFNWDRQRQI--EIRGIEGAKEKWKH-DFEEAQKRGDFNLN 401
Query: 214 PHIKGLFLGWFG----------PLSEAIEREQKMQ-----RTKKQKAAYAPHIELLPADK 258
+ W+ L +A+ RE+K+ T K++A YAP + + +K
Sbjct: 402 KSMNAQCYDWYQKLIPLIKKEHELCKALLREEKVNVQDDTTTAKERAFYAPFLIKVDVEK 461
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIAD 317
AVI + +++ L ++ +A +G AIE E R + ++ K +K++
Sbjct: 462 AAVITILELLKLNANRGSLGGMRAAKAVGSVGRAIELEYRTSNLAAQEYKMSISRKVVGS 521
Query: 318 TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP-WGRDTQAKLGSRLVELLIET 376
S+ K ++RK ++SL +ET P W T++++G LV L+
Sbjct: 522 -----SQMKRIVRKSIDSL---------------DETDPQWDHATRSRIGGVLVSFLMAI 561
Query: 377 AYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM 436
A V+ + D PAF H + + +R GV++ + + L ++
Sbjct: 562 AKVKVVRQSPNGVIQDYHPAFFHSMQFV-------NGQRIGVIKVHNEISKNLSGTSFME 614
Query: 437 LIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEA 492
I +P+LV PK W+ + G L+ ++R + + + +++ GN +K+VF+
Sbjct: 615 SIQPQSLPLLVKPKPWESFYGGVGLYSKKALVRMKDAPETEAYVRAAAKRGN-LKEVFDG 673
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGG---NIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
L+ LG+T W +NK+V ++ W G +I +++ P ++ T + K
Sbjct: 674 LNVLGTTAWTINKKVFDIISHYWNKGEEFLSIPPVLETAQFPAKLSPDADPSTRFEHAKA 733
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
+ + + + R SQRCD KL +AR E+ Y+PHNLDFRGRAYP+ PHLNHL D
Sbjct: 734 TTKAVRDFSSSR-SQRCDYNYKLEIARGFIGEK-LYFPHNLDFRGRAYPISPHLNHLGGD 791
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+ R + F EG LG+ GL WLK+ LAN++ GV+K R+ F +HL E SAE+P
Sbjct: 792 LTRSLFLFWEGTKLGERGLEWLKVQLANVY--GVDKAPISERIQFATDHLQEAIKSAEDP 849
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
+N +WW AE P+Q L+ C L+EA K P +S+LP+HQDG+CNGLQHYAALG +
Sbjct: 850 LN-HKWWTKAEKPWQALSVCFELAEAYKLPDPTEFVSYLPVHQDGTCNGLQHYAALGGDF 908
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL ++P DVY+ ++ V + D+ N D +A D++ RK+VK
Sbjct: 909 EGAKQVNLYPSDRPQDVYTFVSKLVQNRVNADAENGDD-------IAIFFKDKITRKVVK 961
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
QTVMT+VYGVTFVGA QIK+++ + H D+ Y K
Sbjct: 962 QTVMTNVYGVTFVGALAQIKKQVAQ--HFGDEHDAHIYTKYLTK 1003
>gi|62089426|dbj|BAD93157.1| DNA-directed RNA polymerase variant [Homo sapiens]
Length = 1072
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 310/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 311 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 370
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 371 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 420
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 421 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 471
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 472 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 531
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 532 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 591
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 592 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 650
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 651 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 709
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 710 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 769
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 770 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 823
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 824 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 858
>gi|347948643|pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 310/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 373 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 432
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 433 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 482
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 483 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 533
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 534 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 593
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 594 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 653
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 654 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 712
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 713 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 771
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 772 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 831
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 832 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 885
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 886 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 920
>gi|359322171|ref|XP_542220.4| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Canis lupus
familiaris]
Length = 1210
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 181/472 (38%), Positives = 267/472 (56%), Gaps = 33/472 (6%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRFKTILKHPGQ 410
+PW +LG RL ELL+ET + P + P + P H +
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-----PGSLAAPQGACTLIPVLYHVYSF------- 599
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
++ ++ G+++ P E L +A+H LI VPML PP W + G +L P+ +MR
Sbjct: 600 RSFRQIGILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMR 659
Query: 468 T-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
+ G+ + Q L S + +AL LG+ WRVN +VL ++ ++ + G V
Sbjct: 660 SLEGTMQHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVP 719
Query: 527 RNDVLIPEKP---LSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
P P L D + QK + + + K+ +E HS R D +LS+A+ ++
Sbjct: 720 APPSEAPRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHR 779
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL +G
Sbjct: 780 V-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNL-TG 837
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
+ RL F + + +I DSA+ P+ G +WW+ ++P+Q LA C+ ++ A++S P
Sbjct: 838 LKKHEPLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDP 897
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ +SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V ++D
Sbjct: 898 TAFVSHFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQD 957
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ + +A++L + RK+VKQTVMT VYGVT G R QI+RRL E
Sbjct: 958 AQRG------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRE 1003
>gi|2114396|gb|AAB58255.1| mitochondrial RNA polymerase [Homo sapiens]
Length = 1230
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 309/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 982 ESFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1016
>gi|110618253|ref|NP_005026.3| DNA-directed RNA polymerase, mitochondrial precursor [Homo sapiens]
gi|50403691|sp|O00411.2|RPOM_HUMAN RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|2979529|gb|AAC06147.1| RPOM_HUMAN [Homo sapiens]
Length = 1230
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 309/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1016
>gi|119581582|gb|EAW61178.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Homo
sapiens]
Length = 1245
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 309/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 484 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 543
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 544 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 593
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 594 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 644
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 645 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 704
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 705 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 764
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 765 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 823
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 824 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 882
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 883 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 942
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 943 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 996
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 997 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1031
>gi|224116234|ref|XP_002331994.1| predicted protein [Populus trichocarpa]
gi|222832118|gb|EEE70595.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 161/343 (46%), Positives = 231/343 (67%), Gaps = 28/343 (8%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
+ R +L+ + RK +LRRRQVK E EAWE EYKEL M E +LAPNLP++K
Sbjct: 66 FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKS 125
Query: 219 LFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
LFLGWF P +AI +EQ++ RT K + YA + +LLPADK++VI MH++ +VM G +
Sbjct: 126 LFLGWFEPFRDAIAKEQELIRTGKSRQGYALYFDLLPADKMSVIAMHQLAAMVMTGGQHG 185
Query: 279 CVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIK 338
C +VV AA IG AIEQE +++ L RK+V LIK
Sbjct: 186 CARVVTAACMIGDAIEQE-KVNPLLS-------------------------RKKVTDLIK 219
Query: 339 SKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAF 397
+++ +K++K +++KPW D +AK+GSRL+ELL++TAY+Q P + + + RPAF
Sbjct: 220 KQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADTSSEPRPAF 279
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
H F+T+ + +K K+YGV++CDPLVL+GL+++A+HM+IPY+PMLVPP +W+GY+KG
Sbjct: 280 VHTFRTV-SYENKKGAKKYGVIQCDPLVLKGLEKTARHMVIPYMPMLVPPLRWRGYDKGA 338
Query: 458 YLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+LFLPSYVMR HG+++Q+EA+K ++ VFEALDTLG+TK
Sbjct: 339 HLFLPSYVMRIHGAKQQREAVKRAPRKQLQPVFEALDTLGNTK 381
>gi|157823583|ref|NP_001100236.1| DNA-directed RNA polymerase, mitochondrial [Rattus norvegicus]
gi|149034664|gb|EDL89401.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_c [Rattus norvegicus]
Length = 1203
Score = 322 bits (824), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 524 LVD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
V R++ P K L T V K + + + K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
+G ++ S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ +++A++S
Sbjct: 818 -TGLRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRS 876
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E+
Sbjct: 877 PDPTAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELR 936
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
++D+ + +A+ L V RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 937 QQDAKEGLQ------VAQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 985
>gi|149034662|gb|EDL89399.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 1076
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 524 LVD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
V R++ P K L T V K + + + K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
+G ++ S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ +++A++S
Sbjct: 818 -TGLRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRS 876
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E+
Sbjct: 877 PDPTAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELR 936
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
++D+ + +A+ L V RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 937 QQDAKEGLQ------VAQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 985
>gi|149034663|gb|EDL89400.1| polymerase (RNA) mitochondrial (DNA directed) (predicted), isoform
CRA_b [Rattus norvegicus]
Length = 1164
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/475 (39%), Positives = 276/475 (58%), Gaps = 27/475 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKH 407
L+ +PW +LG +L ELL++ VQ P + A + + P H +
Sbjct: 528 LETPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVYSF---- 581
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSY 464
++ ++ G+++ P L+ +A+ L VPML PP W + G YL +
Sbjct: 582 ---RSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTK 638
Query: 465 VMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 IMRATEGTTQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRL 698
Query: 524 LVD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
V R++ P K L T V K + + + K +E HS R + +LS+A+ +
Sbjct: 699 GVPPPRSEAPRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHL 758
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+D F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 759 RDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL 817
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
+G ++ S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ +++A++S
Sbjct: 818 -TGLRKRDSLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRS 876
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E+
Sbjct: 877 PDPTAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELR 936
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
++D+ + +A+ L V RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 937 QQDAKEGLQ------VAQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 985
>gi|149244242|ref|XP_001526664.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449058|gb|EDK43314.1| hypothetical protein LELG_01492 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1307
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 216/679 (31%), Positives = 356/679 (52%), Gaps = 65/679 (9%)
Query: 158 LYKRIKLQEYREMKKR---KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLP 214
+Y +++ E ++ R +FN R+RQ+ E E +++K + + KR N+
Sbjct: 360 IYNKLETAEQKKQFNRALDEFNHDRQRQI--EVRGMEGAREKWKH-DFEEATKRGDLNMS 416
Query: 215 HIKGL---FLGWFGPLSEAIEREQKMQRT---------------KKQKAAYAPHIELLPA 256
KGL WF L I+REQ + R +++A YAP++ +PA
Sbjct: 417 --KGLNAKCYEWFQELMPLIKREQDLCRDLINGDKSAKQGSTEDARERALYAPYLIQVPA 474
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK-TKNYKRKKII 315
++ AVI + ++ A ++ +++ Q +G + E E ++ +K K + KK
Sbjct: 475 ERAAVITILDVLRQHAANTSNKGMRISQTMAGVGKSFEAESKVSKLAKKDAKLFASKKFA 534
Query: 316 ADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
T+ +RV+ ++++ W ++K+G L+ L+
Sbjct: 535 GSTQ-------------------LQRVIRKSLEKQDDKGLVWDPLIRSKIGGVLLSFLMS 575
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
+A V+ + + PAF F ++ + G K+ + + VL G ++ +
Sbjct: 576 SAKVKVTRDVDGKKESAIHPAF---FHSVTVNSGSKSG-MFNIHSEVRKVLSG-NQFSDT 630
Query: 436 MLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEAL 493
++ +PMLV PK W Y GG L+ ++R S + +K+ GN + +VF+ L
Sbjct: 631 IMPQSMPMLVEPKPWSSYYGGGSLYSEESLIRLKESPETSAYVKAAAKRGN-LTEVFDGL 689
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND-VLIPEKPLSEDMTEVQKWKWSVR 552
+ LGST W +N+++ V+ W +G + +D +P +P + D ++ ++ +
Sbjct: 690 NVLGSTPWTMNRKIFDVVSHYWNTGEEYLTIPPVSDQANLPARPETMDPRQIFEYDKAFN 749
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
KA + S+RCD KL +AR E+ Y+P NLDFRGRAYP+ P LNHL D+ R
Sbjct: 750 KAAREFASNRSRRCDYNYKLEIARAYLGEK-LYFPCNLDFRGRAYPITPFLNHLGGDITR 808
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+ F +G+ LGK GL WLK+ LAN++ G++K R+ FVE L + SAE+P N
Sbjct: 809 SLFLFWDGKELGKRGLEWLKVQLANVY--GIDKAPLSERIQFVEERLEDAIKSAEDPYN- 865
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
++WW AE P+Q L+ C L+EA K P +SHLP+HQDG+CNGLQHYAALG + A
Sbjct: 866 NKWWTKAEKPWQALSVCFELAEAYKLEDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGA 925
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VN++ ++P DVY+ +A V E + R + + ++H AK L ++ RK+VKQTVM
Sbjct: 926 TQVNMMPRDRPQDVYTFVANLVEERL-RVAAAEGNEH-----AKFLQGKIKRKVVKQTVM 979
Query: 793 TSVYGVTFVGAREQIKRRL 811
T+VYGVT+VGA +QIK+++
Sbjct: 980 TNVYGVTYVGALQQIKKQI 998
>gi|410921290|ref|XP_003974116.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Takifugu rubripes]
Length = 1102
Score = 318 bits (816), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 188/494 (38%), Positives = 275/494 (55%), Gaps = 50/494 (10%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ ET+ W +LG+ +V+++++ + + D + P H +
Sbjct: 428 LQGGETQ-WPYIVTLELGTYMVDMMVKNLKINSNILNPDQDRKLI-PVLYHMYTF----- 480
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSY 464
++T++ G ++ P +L + + A + + +PML PP W N G YL P+
Sbjct: 481 --RSTRQIGFIKPHP-ILSQMQQDATETKLTFDSYVMPMLCPPMPWSSVNFGAYLLTPTK 537
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+MRT Q E L N + V ++L+ LG+ W++NK VL ++ SI+ G+
Sbjct: 538 LMRTVEGAMQHEMLLEKCQN-LHPVLDSLNQLGNCAWKINKPVLDIIISIFNDRGS---- 592
Query: 525 VDRNDVLIPEKPLSE--------------DMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
+ IP PLSE + +E K V AKK E HS R D
Sbjct: 593 ---EKLDIP-PPLSEAPTIPYFNPNDPNINASEKALLKRQVMSAKKKYGEMHSLRMDALY 648
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLS+A ++DE F++PHN+DFRGR YP P+ NHL SDV R L FAEG+PLG GL W
Sbjct: 649 KLSIANHVRDE-IFWFPHNMDFRGRTYPCPPYFNHLGSDVTRATLLFAEGKPLGTKGLDW 707
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G ++ S RL + + +IFDSA+NP+ G +WW+ A++P+Q L+ C+
Sbjct: 708 LKIHLVNL-TGLKKRSSLQERLEYANTIMEDIFDSADNPLTGKKWWMNADEPWQTLSCCM 766
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++S ISH P+HQDGSCNGLQHYAALGR+ + A +VNL+ E P DVYS +
Sbjct: 767 EIANAVRSPDSAQFISHFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCELPQDVYSSV 826
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V E+ RD+ +A++L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 827 AQQVEELRMRDAKSGMK------IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 880
Query: 811 LEE-----KGHITD 819
L+E K H+ D
Sbjct: 881 LKEIDEFPKEHVWD 894
>gi|332255805|ref|XP_003277019.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Nomascus
leucogenys]
Length = 1230
Score = 318 bits (814), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 201/609 (33%), Positives = 325/609 (53%), Gaps = 37/609 (6%)
Query: 216 IKGLFLGWFGPLSEAI-EREQKMQR-TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMA 273
+K L W L A+ E + +++R + + + P + LL +V +++ + L
Sbjct: 434 LKTLRDQWEKALCRALKETKNRLEREVHEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQ 493
Query: 274 GHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV 333
G + +A + Q R+ ++ +N+ RK + + + L R+
Sbjct: 494 GESFTTLARELSARTFSRHVVQRQRLSGQVQALQNHYRKYLCLLASDTTVPKPCLPRQYW 553
Query: 334 NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
+L + + E +PW Q +LG L E+L++ + ++ S V
Sbjct: 554 EALGAPEALRE----------QPWPLPVQMELGKLLAEMLVQATQMPSSLDKLRRSSRLV 603
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKW 450
P H + + ++ G+++ P ++ L+++A+ L VPML PP W
Sbjct: 604 -PVLYHVYSF-------RNVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPW 655
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
+ G +L P+ +MRT G+ + QE L++ + +AL LG+ WRVN VL
Sbjct: 656 TSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGPVLD 715
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKP---LSEDMTEVQK--WKWSVRKAKKINQERHSQ 564
++ ++ + G V P+ P L T +K + + +K+ ++ HS
Sbjct: 716 LVLQLFQAKGCPQLGVPAPPSEAPQPPEVHLPHSATPARKAELRRELAHCQKVARDMHSL 775
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV R +L FA+GRPLG
Sbjct: 776 RVEALYRLSLAQHLRDCV-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLVFAQGRPLG 834
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
GL WLKIHL NL +G ++ RLAF E + +I DSA+ P+ G +WW+ AE+P+Q
Sbjct: 835 PHGLDWLKIHLVNL-TGFKKREPLQKRLAFAEEVMDDILDSADRPLTGRKWWMGAEEPWQ 893
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
LA C+ +++A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P
Sbjct: 894 TLACCMEVAKAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQ 953
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYS +A +V ++D+ + +A++L + RK+VKQTVMT VYGVT G R
Sbjct: 954 DVYSGVAAQVEVFRRQDAQRG------TRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGR 1007
Query: 805 EQIKRRLEE 813
QI++RL E
Sbjct: 1008 LQIEKRLRE 1016
>gi|387541882|gb|AFJ71568.1| DNA-directed RNA polymerase, mitochondrial precursor [Macaca mulatta]
Length = 1228
Score = 318 bits (814), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 275/479 (57%), Gaps = 28/479 (5%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW Q +LG +L E+L++ + ++ + + P H + + +
Sbjct: 558 QPWPLPVQMELGKQLAEMLVQATRMPSSLD-NRHGSSRLVPVLYHVYSF-------RNVQ 609
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P ++ L+ +A+ L VPML PP W + G +L P+ +MRT G
Sbjct: 610 QIGILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEG 669
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+ + QE L++ + +AL LG+ WRVN +VL ++ ++ + G V
Sbjct: 670 ATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPKLGVPAPAS 729
Query: 531 LIPEK-----PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
P+ P S + + + + +K+ +E HS R + +LS+A+ ++ F+
Sbjct: 730 EAPQPAEAHVPQSAAPARKAELRRELARCQKVAREMHSLRAEALYRLSLAQHLRGRV-FW 788
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
PHN+DFRGR YP PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++
Sbjct: 789 LPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGFKKR 847
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
RLAF E + +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A++ S P + +
Sbjct: 848 EPLRKRLAFAEEVMDDILDSADQPMTGRKWWMGAEEPWQTLACCMEVANAVRCSDPAAYV 907
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 908 SHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG 967
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
+A++L + RK+VKQTVMT VYGVT G R QI++RL E +TD Q F
Sbjct: 968 ------TRVAQMLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---LTDFPQEF 1017
>gi|148235669|ref|NP_001080987.1| polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
gi|6625742|gb|AAF19376.1|AF200705_1 RNA polymerase [Xenopus laevis]
gi|213626594|gb|AAI69686.1| Polymerase (RNA) mitochondrial (DNA directed) [Xenopus laevis]
Length = 1235
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 203/588 (34%), Positives = 317/588 (53%), Gaps = 59/588 (10%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P++ LL D+ I++ + + G + + +G I IH L+
Sbjct: 465 PYLCLLEEDQYVDIMLQSLTNIPPTGES-----FLVMSRDMGTKINNRYSIHKKLKAYNL 519
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEAQKL----LKNEETKPWGRDTQ 362
K K + D ++L+K +V+ L+ + +E +K L N +T W
Sbjct: 520 NKIKVLYRDYCQLLAKNG-----KVSGLLPREMWEQLEQEKYGGPSLMNVDTI-WPNTLL 573
Query: 363 AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
+LG+ LV+L+++ V + + + P + P H + ++TK+ G+++
Sbjct: 574 VQLGTHLVDLMVQEIKVPNDLL-SSRDDPKLIPVLYHMYSF-------RSTKQIGLIKPH 625
Query: 423 PLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEA 477
P + + A+ + + +PML PP W G YL P+ +MR G+ + Q
Sbjct: 626 P-IFSQIQLDARESCLTFESSVMPMLCPPVPWMSPRFGAYLLSPAKLMRCMEGAVQHQLL 684
Query: 478 LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV------- 530
L+ + V ++L+ LG WR+N+ +L ++ SI+ GN ++ D+
Sbjct: 685 LEKSPPGQLYPVLDSLNQLGMCAWRINQTILDIIVSIFNLKGN-----EKLDIPPPISEA 739
Query: 531 -LIPEKPL----SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+PE+P S+D Q+ + + +K + E HS R D KLS+A ++D+ F+
Sbjct: 740 PKMPEQPHGDVNSKDKLMHQR---ELARCRKKSSEMHSLRMDALYKLSIASHLRDK-IFW 795
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGR YP P+ NHL SDV R +L FAEGRPLG GL WLKIHL NL +G ++
Sbjct: 796 FPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKIHLINL-TGLKKR 854
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
S R + + + +I DSA+NP+ G RWW+ A++P+Q LA C+ +++A +S P I
Sbjct: 855 NSLKERKEYADAIMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAKASRSPDPTKYI 914
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
SH P+HQDGSCNGLQHYAALGR+ + A +VNL+ + P DVYS +A +V E KRD+ +
Sbjct: 915 SHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDTPQDVYSGVAQQVEEFCKRDAQRG 974
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+A+IL + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 975 ------VKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1016
>gi|432101125|gb|ELK29409.1| DNA-directed RNA polymerase, mitochondrial [Myotis davidii]
Length = 1219
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/483 (36%), Positives = 280/483 (57%), Gaps = 33/483 (6%)
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD-VRPAFRHRFK 402
EA + + +PW +LG +L E+L++T V+ P N A + P H +
Sbjct: 543 EALGTTEASQDQPWPLTVVVQLGKQLAEVLVQT--VKMPSNLAQQQDTQKLIPVLYHVYS 600
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYL 459
++ ++ G+++ P ++ + +A+ + VPML PP W + G +L
Sbjct: 601 F-------QSFRQIGILKPHPAFIQLQETAAERTMTFESAEVPMLCPPLPWTSPHSGAFL 653
Query: 460 FLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
P+ +MR+ G+ + Q L+ + +AL LG+ WRVN +VL ++ +I+ +
Sbjct: 654 LSPTKLMRSLEGTIQHQRLLEGCPPTELHGALDALTQLGNCAWRVNGRVLDLVLTIFNAK 713
Query: 519 G-------NIAGLVDR-NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
G + A R + +P E TE+++ + + K+ +E HS R D
Sbjct: 714 GCPRLGVPSPASEAPRPSKHRLPANASPERKTELRR---ELARCLKVAREMHSLRTDALY 770
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
+LS+A+ ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL W
Sbjct: 771 RLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLNW 829
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G ++ S RLAF + + +I DSA+ P+ G +WW+ A++P+Q LA C+
Sbjct: 830 LKIHLVNL-TGLKKRESLQARLAFADEIMDDILDSADQPMTGRKWWMEADEPWQALACCM 888
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+++A+++ +P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNLV + P DVYS +
Sbjct: 889 EIAKAVRAPNPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVPSDVPQDVYSSV 948
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V ++D+ + +A +L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 949 AAQVEVFRRQDAERG------VQVATVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 1002
Query: 811 LEE 813
L E
Sbjct: 1003 LRE 1005
>gi|301620987|ref|XP_002939816.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Xenopus
(Silurana) tropicalis]
Length = 1242
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 199/582 (34%), Positives = 316/582 (54%), Gaps = 47/582 (8%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P++ LL D+ I++ + + G + + +G I IH L+++
Sbjct: 472 PYLCLLGEDQYVDIMLQSLASIPPTGES-----FLVMSRDMGTKINNRYSIHKKLQESHI 526
Query: 309 YKRKKIIADTEEVLSKEKE---LLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKL 365
+ + + D ++L+K + LL + + ++ K+ A L N +T W +L
Sbjct: 527 NRIQDLYRDYCQLLAKNGKVSGLLPREMWEQLEQKKYGGAS--LMNLDTI-WPNSLLVQL 583
Query: 366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
G+ LV+L+++ V + + + P + P H + ++TK+ G+++ P+
Sbjct: 584 GTHLVDLMVQEIKVPNDL-LSSRDDPKLIPVLYHMYSF-------RSTKQIGLIKPHPIF 635
Query: 426 LEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSV 481
+ + + L +PML PP W G YL P+ +MR G+ + Q L+
Sbjct: 636 SQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQHQLLLEKS 695
Query: 482 TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV--------LIP 533
+ V ++L+ LG WR+N+ +L ++ SI+ GN ++ D+ +P
Sbjct: 696 PPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGN-----EKLDIPPPLSEAPKLP 750
Query: 534 EKPLSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
E+P D+ K + + + +K + E HS R D KLS+A ++D+ F++PHN+D
Sbjct: 751 EQP-HGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDK-IFWFPHNMD 808
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
FRGR YP P+ NHL SDV R +L FAEGRPLG GL WLK HL NL +G ++ S R
Sbjct: 809 FRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINL-TGLKKRNSLQER 867
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+ ++ + +I DSA+NP+ G RWW+ A++P+Q LA C+ ++ A +S P ISH P+H
Sbjct: 868 KEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIANASRSPDPTKYISHFPVH 927
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+ + A +VNL+ + P DVYS +A +V E KRD+ +
Sbjct: 928 QDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDAQRG------ 981
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+A+IL + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 982 VKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1023
>gi|47215657|emb|CAG01374.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 316 bits (809), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 183/484 (37%), Positives = 272/484 (56%), Gaps = 45/484 (9%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP-GQKTTKR 415
W +LG+ +V+L+++ + + + PA + +L H ++T++
Sbjct: 143 WPYIVTLELGTYMVDLMVKNLKINSDI---------LNPAHDRKLIPVLYHMYAFRSTRQ 193
Query: 416 YGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
G ++ P +L + + A + + +PML PP W G YL P+ +MRT
Sbjct: 194 IGFIKPHP-ILSQMQQEAMETKLTFDSYVMPMLCPPVPWTSVRFGAYLLTPTKLMRTVEG 252
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
Q + L N + V ++L+ LG+ W++NK VL ++ SI+ G+ ++ D+
Sbjct: 253 AMQHDVLLEKCQN-LHPVLDSLNQLGNCAWKINKPVLDIIISIFNDRGS-----EKLDIP 306
Query: 532 IPE---------KPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
P P + T +K K V AKK E HS R D KLS+A M+D
Sbjct: 307 PPLTEAPRIPHFNPHDPNYTASEKALMKRQVMSAKKKYSEMHSLRMDALYKLSIAHHMRD 366
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E F++PHN+DFRGR YP P+ NHL SDV R L FAEG+PLG GL WLKIHL NL +
Sbjct: 367 EI-FWFPHNMDFRGRTYPCPPYFNHLGSDVTRATLLFAEGKPLGAKGLDWLKIHLVNL-T 424
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G ++ S GRL + + + +I DSA+NP+ G +WW+ A++P+Q L+ C+ ++ A+++
Sbjct: 425 GLKKRSSLQGRLEYADTIMEDILDSADNPLKGKKWWMNADEPWQALSCCMEIANAVRAPD 484
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
ISH P+HQDGSCNGLQHYAALGR+ + A +VNL+ E P DVYS +A +V E+ R
Sbjct: 485 STQFISHFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCEVPQDVYSGVAQQVEELRAR 544
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-----KG 815
D+ +A++L + RK+VKQTVMT VYGVT G R QI++RL+E K
Sbjct: 545 DAKSGLK------IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDEFPKE 598
Query: 816 HITD 819
H+ D
Sbjct: 599 HVWD 602
>gi|196004815|ref|XP_002112274.1| hypothetical protein TRIADDRAFT_25308 [Trichoplax adhaerens]
gi|190584315|gb|EDV24384.1| hypothetical protein TRIADDRAFT_25308, partial [Trichoplax
adhaerens]
Length = 607
Score = 315 bits (808), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 278/478 (58%), Gaps = 26/478 (5%)
Query: 361 TQAKLGSRLVELLIETAYVQHPVNPA-DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
++ +LGS +VE+ + A V VN + + PAF H + + ++ G +
Sbjct: 2 SRLQLGSAIVEIFLRVAKVN--VNLMKEKAEEKFIPAFYHVYVF-------QKQRQVGFI 52
Query: 420 ECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL 478
+ P V+ + K ++ +PMLVP + W ++ GGY+ P+ +MR Q+ L
Sbjct: 53 KPHPNVM----KLGKFLMETSMLPMLVPSRPWLCHHDGGYVATPAPIMRYREDCFDQDVL 108
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGLVDRNDVLIPEKPL 537
+ + ++ ++++++ LGS W+VNK+VL +E +G +I + D + +P P+
Sbjct: 109 LAKSSRKLRSIYDSINYLGSCPWKVNKRVLDKCIECFNETGSDILDIPDPRLIPMPPYPV 168
Query: 538 SEDMTEVQKWKWSV--RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
D+ +K + R+ K +E HS R D KLSVA+ +++ F+ PHN+DFRGR
Sbjct: 169 DPDIEPQEKRRIIELRRQVAKKQREHHSLRMDVLYKLSVAKHFEND-IFWLPHNMDFRGR 227
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ PHL+H+ +D+ R ++ FA GRPLG G W+K+HLAN+ G + K S R+ F
Sbjct: 228 VYPIPPHLSHVGNDLSRSLMLFAIGRPLGTEGFDWIKVHLANV-HGQMSKASLTDRINFT 286
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGS 715
E+ EI DSA+NP G +WW T E P+Q LA C+ L++ + +P IS+ P+HQDG+
Sbjct: 287 ESLKNEILDSADNPFTGDKWWQTGEHPWQTLATCMELADVWRCDNPEQYISYFPVHQDGT 346
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALGR+TL A VNLV+ P D+YS +A V E +D+ K+ A
Sbjct: 347 CNGLQHYAALGRDTLGAEQVNLVSRGIPQDIYSAVARLVEEHRAKDAKKN------NFNA 400
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
L +V RK+VKQTVMT VYGVT VG REQI R+LE + ++ ++F A+ Y ++
Sbjct: 401 LWLEGKVSRKVVKQTVMTIVYGVTRVGGREQIARQLERLQELENEERIFTASQYLVRI 458
>gi|403309070|ref|XP_003944953.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 1233
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 185/484 (38%), Positives = 278/484 (57%), Gaps = 27/484 (5%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRH 399
++ +A +L+ + +PW Q +LGS L E+L VQ P P+D + +P
Sbjct: 548 RQYWDALGVLEPPQEQPWPLPVQVELGSLLAEIL-----VQAPKMPSDLT----KPRGDS 598
Query: 400 RFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
R +L H + + G ++ P +E L +A+ L VPML PP W +
Sbjct: 599 RLVPVLYHVYSFRNVYQIGFLKPHPAYVELLATAAEPTLTFEAVDVPMLCPPLPWTSPHT 658
Query: 456 GGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLES 513
G +L P+ +MR G+ Q L+ + + L LG+ WRVN +VL VLE
Sbjct: 659 GAFLLSPTKLMRAVDGTMHHQRLLERCPPAALHGALDTLTQLGNCAWRVNGRVLDLVLEL 718
Query: 514 IWVSGGNIAGLVDR-NDVLIPEK---PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
G G+ R ++V P + P S + + + + + + K +E HS R +
Sbjct: 719 FQEEGCPKLGVPARPSEVAAPHEAALPSSTGLADKAELRRELARCLKEAREMHSLRTEAL 778
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A+ +++ F+ PHN+DFRGR YP PH NHL +D+ R +LEFA+GRPLG GL
Sbjct: 779 YRLSLAQHLRNRI-FWLPHNMDFRGRTYPCPPHFNHLGNDLARALLEFAQGRPLGPHGLD 837
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIH+ NL +G ++ R AF E + +I DSA++P+ G +WW+ +E+P+Q LA C
Sbjct: 838 WLKIHVVNL-TGLKKREPLQARRAFAEEVMGDILDSADHPMTGRKWWMDSEEPWQTLACC 896
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ +++A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL E P DVYS+
Sbjct: 897 MEIAKAVRTSDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPAEVPQDVYSD 956
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A +V D+ + +A++L V RK+VKQTVMT VYGVT G R QI++
Sbjct: 957 VAAQVEFFRSLDARRG------VRVAQVLEGFVTRKVVKQTVMTVVYGVTRYGGRLQIEK 1010
Query: 810 RLEE 813
RL E
Sbjct: 1011 RLRE 1014
>gi|417406183|gb|JAA49758.1| Putative mitochondrial/chloroplast dna-directed rna polymer [Desmodus
rotundus]
Length = 1222
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 281/484 (58%), Gaps = 27/484 (5%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD-YSPPDVRPAFR 398
++ EA + + +PW +LG +L E+L++T V+ P + A ++ P
Sbjct: 542 RQYWEALGMPEAPHEQPWPLAVVVQLGKQLAEVLVQT--VKMPGHLAQRQGTHNLIPVLY 599
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
H + ++ ++ G+++ P + L+ +A+ + VPML PP W +
Sbjct: 600 HVYSF-------RSFRQIGILKPHPAFKQLLETAAERTMTFEAAEVPMLCPPLPWTSPHS 652
Query: 456 GGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G +L P+ +MR+ G+ + Q L+S + + L LG+ WRVN +VL ++ ++
Sbjct: 653 GAFLLSPTKLMRSVEGTMQHQRLLESCPPTNLHGALDTLTQLGNCAWRVNGRVLDLVLTL 712
Query: 515 WVSGGNIAGLVDRNDVLIPEKP---LSEDMTEVQKWKWSVRKAK--KINQERHSQRCDTE 569
+ G V P P LS + +K + + A+ K+ +E HS R D
Sbjct: 713 FNKKGCPRLGVPAPASEAPRPPENRLSTKASPERKVELRRQLARCLKVAREMHSLRTDAL 772
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A+ +++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL
Sbjct: 773 YRLSLAQHLRNSV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLD 831
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHL NL +G ++ S RLAF + + +I DSA+ P+ G +WW+ A++P+Q LA C
Sbjct: 832 WLKIHLVNL-TGLKKRESLQARLAFADEMMNKILDSADKPMTGHKWWMEADEPWQALACC 890
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ +++A+++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNLV + P DVYS
Sbjct: 891 MEIAQAVRAPDPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVPSDLPQDVYSS 950
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A +V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI++
Sbjct: 951 VAAQVEVFRRQDAEQG------VQVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEK 1004
Query: 810 RLEE 813
RL E
Sbjct: 1005 RLRE 1008
>gi|74193237|dbj|BAE20618.1| unnamed protein product [Mus musculus]
Length = 1069
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 271/474 (57%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 392 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 443
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 444 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 503
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 504 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 563
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 564 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 623
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 624 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 681
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 682 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 741
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 742 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 801
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 802 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 849
>gi|344243361|gb|EGV99464.1| DNA-directed RNA polymerase, mitochondrial [Cricetulus griseus]
Length = 1232
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 186/474 (39%), Positives = 276/474 (58%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW LG +L E+L++ VQ P N S P A RH +
Sbjct: 527 LETPMQQPWSLTVLLHLGKQLAEMLVQA--VQMPRN---LSTPQ---ASRHLIPVLYHVY 578
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P + L+ +A+ LI VPML PP W + G YL + +
Sbjct: 579 SFRSYRQIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKL 638
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG--NIA 522
MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 MRATEGTTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLG 698
Query: 523 GLVDRNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
R++ P + L T + K + + + KI +E HS R + +LS+A+ ++
Sbjct: 699 VPPPRSEAPQPAQLRLPPGATPLHKAELRKELSRCLKIAREMHSLRIEALYRLSLAQHLR 758
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+ F+ PHN+DFRGR YP P+ NHL SD+ R +LEFAEGRPLG GL W+KIHL NL
Sbjct: 759 NRV-FWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL- 816
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G ++ S RL F + + EI DSA+NP+ G +WW+ A++P+Q LA CI ++ A++S
Sbjct: 817 TGLRKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSP 876
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ +SHLP+HQDGSCNGLQHYAALGR++ AA+VNL+ + P DVY E+A +V E+ +
Sbjct: 877 DAAAYVSHLPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSDLPQDVYREVAAQVEELRQ 936
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
RD+ KD + +A +L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 937 RDA-KDGLQ-----VAHVLKGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 984
>gi|354480822|ref|XP_003502602.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Cricetulus
griseus]
Length = 1202
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 186/474 (39%), Positives = 276/474 (58%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW LG +L E+L++ VQ P N S P A RH +
Sbjct: 527 LETPMQQPWSLTVLLHLGKQLAEMLVQA--VQMPRN---LSTPQ---ASRHLIPVLYHVY 578
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P + L+ +A+ LI VPML PP W + G YL + +
Sbjct: 579 SFRSYRQIGILKPHPAFSKLLETAAEPTLILETTEVPMLCPPLPWTTPHTGAYLLSSTKL 638
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG--NIA 522
MR T G+ + Q L+ + +AL LG+ WRVN ++L ++ I+ G +
Sbjct: 639 MRATEGTTQHQHLLERCAPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCTRLG 698
Query: 523 GLVDRNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
R++ P + L T + K + + + KI +E HS R + +LS+A+ ++
Sbjct: 699 VPPPRSEAPQPAQLRLPPGATPLHKAELRKELSRCLKIAREMHSLRIEALYRLSLAQHLR 758
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+ F+ PHN+DFRGR YP P+ NHL SD+ R +LEFAEGRPLG GL W+KIHL NL
Sbjct: 759 NRV-FWLPHNMDFRGRTYPCPPYFNHLGSDLARALLEFAEGRPLGPRGLDWIKIHLVNL- 816
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G ++ S RL F + + EI DSA+NP+ G +WW+ A++P+Q LA CI ++ A++S
Sbjct: 817 TGLRKRDSLRMRLRFADEVMEEILDSADNPMTGRKWWMEADEPWQTLACCIEVARAVRSP 876
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ +SHLP+HQDGSCNGLQHYAALGR++ AA+VNL+ + P DVY E+A +V E+ +
Sbjct: 877 DAAAYVSHLPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSDLPQDVYREVAAQVEELRQ 936
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
RD+ KD + +A +L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 937 RDA-KDGLQ-----VAHVLKGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 984
>gi|26351727|dbj|BAC39500.1| unnamed protein product [Mus musculus]
Length = 1207
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 271/474 (57%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 987
>gi|281332113|ref|NP_766139.2| DNA-directed RNA polymerase, mitochondrial precursor [Mus musculus]
gi|50401559|sp|Q8BKF1.1|RPOM_MOUSE RecName: Full=DNA-directed RNA polymerase, mitochondrial;
Short=MtRPOL; Flags: Precursor
gi|26343407|dbj|BAC35360.1| unnamed protein product [Mus musculus]
gi|74185846|dbj|BAE32793.1| unnamed protein product [Mus musculus]
gi|84570033|gb|AAI10698.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|109734947|gb|AAI17941.1| Polymerase (RNA) mitochondrial (DNA directed) [Mus musculus]
gi|148699719|gb|EDL31666.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_a [Mus
musculus]
Length = 1207
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 271/474 (57%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 987
>gi|148699721|gb|EDL31668.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_c [Mus
musculus]
Length = 1166
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 271/474 (57%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 987
>gi|148699720|gb|EDL31667.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_b [Mus
musculus]
Length = 1078
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 271/474 (57%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 HRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 987
>gi|395831257|ref|XP_003788721.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Otolemur
garnettii]
Length = 1227
Score = 312 bits (800), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 186/469 (39%), Positives = 275/469 (58%), Gaps = 27/469 (5%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTT 413
+PW +LG +L E+L++ VQ P + A P R +L H ++
Sbjct: 563 QPWPVPVLLQLGRQLAEILVQA--VQMPGSLAA-------PQGSCRLIPVLYHVYSFRSY 613
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-TH 469
++ G+++ P ++ L ++A+ L VPML PP W + G +L P+ +MR
Sbjct: 614 RQIGILKPHPAFVQLLAKAAEPTLTFETVDVPMLCPPLPWTSPHSGAFLLSPTKLMRAVE 673
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGLVD-- 526
G+ + Q L+ + +AL LG+ WRVN +VL VLE G + G+
Sbjct: 674 GTTQHQRLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFRGKGCSHLGVPPPA 733
Query: 527 RNDVLIPEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
PE L D +K + + + K+ +E HS R D +LS+A+ ++ F
Sbjct: 734 SEAPRPPEGHLPPDAPPARKAELRRELARCLKVAREMHSLRADALYRLSLAQHLR-HHIF 792
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHLANL +G +
Sbjct: 793 WLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLANL-TGLKK 851
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
+ S RLAF + + +I DSA+ P+ G +WW+ A++P+Q LA C+ ++ A+++ +P +
Sbjct: 852 RASLHERLAFADEVMDDILDSADQPMMGRKWWMGADEPWQALACCMEIARAVRTPNPATY 911
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
+SHLP+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V EI +R K
Sbjct: 912 VSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLMPLDLPQDVYSGVAAQV-EIFRRQDAK 970
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 971 EGLQ-----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1014
>gi|351714005|gb|EHB16924.1| DNA-directed RNA polymerase, mitochondrial [Heterocephalus glaber]
Length = 1213
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 177/424 (41%), Positives = 251/424 (59%), Gaps = 24/424 (5%)
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
+ ++ G + P ++ LD +A+ ++I +PML PP W GG+L P+ +MR
Sbjct: 597 RGIRQIGFLRPHPAFIQLLDDAAEPLMIFEATDMPMLCPPLPWASSQSGGFLLSPTKLMR 656
Query: 468 T-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
+ GS + Q L S + + L LG+ WRVN +VL ++ I+ + G V
Sbjct: 657 SVDGSLQHQNLLDSWPPTELHGALDTLTQLGNCAWRVNGRVLDLVLEIFRNKGCARLGVP 716
Query: 527 RNDVLIPEKPLSEDMT------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
P PL ED+ + + V KI +E H R + +L+ R
Sbjct: 717 PPASEAPRPPL-EDLPPNASPHRKAELRQEVASCLKIAREMHGLRREALYRLAQHLR--- 772
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
+ F+ PHN+DFRGR+YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL +
Sbjct: 773 HQVFWLPHNMDFRGRSYPCPPHFNHLGSDLARALLEFAEGRPLGPHGLDWLKIHLINL-T 831
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G ++ S RLAF + +I DSA+ P+ G +WW+ AEDP+Q LA C+ ++ A++S
Sbjct: 832 GVKKRESLRVRLAFANTVMDDILDSADQPMTGRKWWMEAEDPWQTLACCMEVAGAVRSPD 891
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
P + +SHLPIHQDGSCNGLQHYAALGR+++ AA+VNL+A +KP DVYS +A +V E+ +
Sbjct: 892 PAAYVSHLPIHQDGSCNGLQHYAALGRDSVGAASVNLMASDKPQDVYSGVAAQV-EVFRT 950
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
K K +A++L + RK+VKQTVMT VYGVT G R QI++RL E ++D
Sbjct: 951 QDAKQGLK-----VAQVLEGFISRKVVKQTVMTVVYGVTLYGGRLQIEKRLRE---LSDF 1002
Query: 821 RQLF 824
Q+F
Sbjct: 1003 PQVF 1006
>gi|344307837|ref|XP_003422585.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Loxodonta
africana]
Length = 1234
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 177/460 (38%), Positives = 259/460 (56%), Gaps = 22/460 (4%)
Query: 364 KLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECD 422
+LG +L E+L+ ++ P + P + A +L H ++ ++ G+++
Sbjct: 569 QLGKQLAEVLVRAVHM-----PRNLGAPAGKGAGTEPLIPVLYHVYSFRSVRQIGILKPH 623
Query: 423 PLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSRKQQEAL 478
P + L +A+ L VPML PP W + G +L P+ +MR G+ Q+ L
Sbjct: 624 PAFSQLLAAAAEPTLTFEAAEVPMLCPPLPWTSPHSGAFLLSPAKLMRAVEGTMLHQQRL 683
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGNIAGL----VDRNDVLIP 533
+ + F+AL LG+ WRVN +VL VLE G G+ D
Sbjct: 684 EHCPPAALHGAFDALTQLGNCAWRVNGRVLDLVLELFHAHGCTRLGVPPPASDAPCPPAR 743
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
P + + + V + K +E S R D +LS+A+ ++ F+ PHN+DFR
Sbjct: 744 RPPPGTPPARLAELRREVARCLKAARELRSLRADALYRLSLAQHLRHHGAFWLPHNMDFR 803
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GR YP PHL+HL SD+ R +LEFA+G PLG GL WLK+HL NL +G ++ S RLA
Sbjct: 804 GRTYPCPPHLSHLGSDLARALLEFAQGCPLGPHGLDWLKLHLVNL-TGLKKRESLQARLA 862
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F + L E+ DSA+ P+ G +WW+ A++P+Q LA C+ L+ AL+S P S +SH P+HQD
Sbjct: 863 FADQVLDEVLDSADRPMTGRKWWMEADEPWQTLACCMELARALRSPDPTSFVSHFPVHQD 922
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
GSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 923 GSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYSGVAAQVEVFRRQDAEQG------VR 976
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+A++L V RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 977 VAQVLEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1016
>gi|281341337|gb|EFB16921.1| hypothetical protein PANDA_012709 [Ailuropoda melanoleuca]
Length = 1170
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 268/480 (55%), Gaps = 44/480 (9%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRFKTILKHPGQ 410
+PW +LG +L E+L+E + P P + P H +
Sbjct: 511 QPWPLPVLVQLGKKLAEVLVEVVRM-----PGSLVTPQGSCTLIPVLYHVYSF------- 558
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
++ ++ G+++ P E L +A+H L VPML PP W + G +L P+ +MR
Sbjct: 559 RSFRQIGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMR 618
Query: 468 T-HGSRKQQEALKSVTGNC-----MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
+ G+ + Q L + +AL LG+ WRVN +VL ++ ++ + G
Sbjct: 619 SLEGTMQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCP 678
Query: 522 AGLVDRNDVLIPEKP---LSEDMTEVQKW--KWSVRKAKKINQERHSQRCDTELKLSVAR 576
V P P L + QK + V + K+ +E HS R D +LS+A+
Sbjct: 679 RLGVPAPPSEAPRPPDGRLPPSASSAQKAEVRREVARCLKVAREMHSLRSDALYRLSLAQ 738
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
++D F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL
Sbjct: 739 HLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLV 797
Query: 637 NLFSGGVEKLSHD---GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
NL G++K H+ RL F + + +I DSA+ P+ G +WW+ A++P+Q LA C+ ++
Sbjct: 798 NL--TGLKK--HEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCMEIA 853
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
A++++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +
Sbjct: 854 RAVRTADPTAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLLPSDLPQDVYSGVAAQ 913
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI+RRL E
Sbjct: 914 VEVFRRQDAERG------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRE 967
>gi|301776278|ref|XP_002923551.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 1228
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 182/483 (37%), Positives = 268/483 (55%), Gaps = 50/483 (10%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD----VRPAFRHRFKTILKHPGQ 410
+PW +LG +L E+L+E + P P + P H +
Sbjct: 559 QPWPLPVLVQLGKKLAEVLVEVVRM-----PGSLVTPQGSCTLIPVLYHVYSF------- 606
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR 467
++ ++ G+++ P E L +A+H L VPML PP W + G +L P+ +MR
Sbjct: 607 RSFRQIGILKPHPAFTELLAVAAEHTLTFEAAEVPMLCPPLPWMSPHTGAFLLSPTKLMR 666
Query: 468 T-HGSRKQQEALKSVTGNC-----MKKVFEALDTLGSTKWRVNKQVLS-VLESIWVSGGN 520
+ G+ + Q L + +AL LG+ WRVN +VL VLE G
Sbjct: 667 SLEGTMQHQRLLPPPPPPPPPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFTAKGCP 726
Query: 521 IAGLVDRN-------DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
G+ D +P S EV++ V + K+ +E HS R D +LS
Sbjct: 727 RLGVPAPPSEAPRPPDGRLPPSASSAQKAEVRR---EVARCLKVAREMHSLRSDALYRLS 783
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ ++D F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKI
Sbjct: 784 LAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKI 842
Query: 634 HLANLFSGGVEKLSHD---GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
HL NL G++K H+ RL F + + +I DSA+ P+ G +WW+ A++P+Q LA C+
Sbjct: 843 HLVNL--TGLKK--HEPLRARLLFADEVMDDILDSADRPMTGRKWWMEADEPWQALACCM 898
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +
Sbjct: 899 EIARAVRTADPTAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASVNLLPSDLPQDVYSGV 958
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI+RR
Sbjct: 959 AAQVEVFRRQDAERG------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERR 1012
Query: 811 LEE 813
L E
Sbjct: 1013 LRE 1015
>gi|167524739|ref|XP_001746705.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774975|gb|EDQ88601.1| predicted protein [Monosiga brevicollis MX1]
Length = 1253
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 190/527 (36%), Positives = 290/527 (55%), Gaps = 68/527 (12%)
Query: 334 NSLIKSKRVMEAQKLLKNEET------KPWGRDTQAKLGSRLVELLIETAYVQHPVNPAD 387
N+L + R +E + +K ++ PW G+ L+E++++T+ H N
Sbjct: 140 NALADTWRRVEQRLGIKTDDQYDSDLLSPWPIPVLLACGTSLLEVVLQTSSTGHLPNH-- 197
Query: 388 YSPPDVRP--AFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA--KHMLIP---- 439
D +P AF H + KR G + C LVL+ + A + +P
Sbjct: 198 ----DKKPVAAFYHMMQL-------DGVKRVGYIRCHKLVLDRVSGQASDRGSCVPSKVA 246
Query: 440 ----YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDT 495
+PM +PP+ W KG YL PS +MRT Q AL S + + +VF A+
Sbjct: 247 IDASQLPMTIPPRPWTSVRKGAYLICPSAIMRTGDWAFQHFALLSEATHNLARVFNAISA 306
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-DMTEVQKWKWSVRKA 554
L +T W+VN QVL V+ ++ S L + P + E D T+ + S++
Sbjct: 307 LSATAWKVNGQVLRVVTELFHSEDGYDDLG-----IAPFRVNYEVDKTDPK----SLKTH 357
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
KK++ E HS R D L+L VA + +++ F+ PHNLDFRGRAY M P+L H+ +D+ RG+
Sbjct: 358 KKLSNEAHSLRSDLHLRLMVAHWLGEKQ-FWLPHNLDFRGRAYSMPPYLTHIGNDMARGL 416
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING-- 672
L FAE +PLG G RWLK+HLAN++ G +KL D R F E+++ + SA+ P+ G
Sbjct: 417 LTFAETKPLGADGWRWLKVHLANVY--GKDKLPMDERAKFAEDNMENVLSSADRPLAGLL 474
Query: 673 ----SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
WWL E+P+Q LA C+ L+ A +S +P + S P+HQDG+CNGLQHYAA+G +
Sbjct: 475 EPGEKSWWLKGENPWQVLATCMELAAAYRSGNPEAYESGFPVHQDGTCNGLQHYAAMGGD 534
Query: 729 TLEAAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSN-----------KDPSKHPQALL 774
A VN++ ++P DVYS +A +V E++ + KDP ++ Q L
Sbjct: 535 IAGARHVNVIPTPEDDRPQDVYSAVAAKVDELLHMQATTGNFEHFPREVKDPERYKQ--L 592
Query: 775 AKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
A++L++Q + RK+VKQTVMT+VYGVT++G R+QI R+L+ ++ D
Sbjct: 593 ARLLMEQGPMKRKIVKQTVMTNVYGVTYIGGRDQILRQLKAHDYVPD 639
>gi|223995603|ref|XP_002287475.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220976591|gb|EED94918.1| rpot-like RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 1217
Score = 308 bits (790), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 162/408 (39%), Positives = 243/408 (59%), Gaps = 43/408 (10%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PM+VPPK WK + GGY + + MRT + Q++A++ + +VFE L+ LG W
Sbjct: 612 PMVVPPKDWKAVDDGGYETIKTEFMRTRHCKTQKDAIRHAD---LTQVFEGLNVLGRIPW 668
Query: 502 RVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP----------LSEDMTEVQKWKWSV 551
++N+ VL W G + + +++ +P P L +D +VQ + +
Sbjct: 669 KINQNVLDAACKCWDDGIALGDIPSQDNHQVPPLPTPLDYRDFNLLDDDEKKVQVDAFRI 728
Query: 552 RKA--------KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
K K+ N + HS RC LKL+ A++ +D E ++P+N+DFRGRAYP+ PHL
Sbjct: 729 YKDAITKHFRFKQKNMDLHSLRCSAMLKLNQAKKFRDFEEIFFPYNVDFRGRAYPVPPHL 788
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
+ + SD+CR +L FA +PLG +GL WLK+HLANL G K+S DGR F ++++ I
Sbjct: 789 SIVGSDLCRALLMFAHPKPLGPNGLYWLKVHLANL--AGANKMSFDGRAQFADDNMESIR 846
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
+ +NP G+ WW+ +DPFQ LA C + +A+ S P + + LP+H DGSCNGLQHYA
Sbjct: 847 AAVDNPFGGNDWWMGFDDPFQGLATCHEIVKAIDSGDPANYMCSLPVHMDGSCNGLQHYA 906
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR------------DSNKDPSKHPQ 771
ALGR+ + AVNL ++P DVY I V +HE+++R ++ D +K +
Sbjct: 907 ALGRDKVGGKAVNLCIADEPQDVY--IGV-MHEVIRRVAEDAQEMLPFDETKADLTKAEK 963
Query: 772 ALLAKI----LIDQ-VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
L+ KI L++ +DR +VK+TVMTSVYGVT++GAR QI ++EEK
Sbjct: 964 ELMKKIKSARLVNGLIDRGVVKRTVMTSVYGVTYIGARNQISEKIEEK 1011
>gi|156386128|ref|XP_001633765.1| predicted protein [Nematostella vectensis]
gi|156220840|gb|EDO41702.1| predicted protein [Nematostella vectensis]
Length = 496
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 241/396 (60%), Gaps = 18/396 (4%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC----MKKVFEALDTL 496
+PMLVPP+ W+G GG+L P +MR+ + C + V ++L+ L
Sbjct: 6 LPMLVPPRPWRGIRDGGFLIQPVQLMRSTQEMDDNHD-HMLRYKCDSRELSAVLDSLNYL 64
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV---RK 553
G+ W+ N ++L + ++ G+ + V + +PL + + E + + R+
Sbjct: 65 GTCAWKTNNRILDLAIQVFNDQGDDTLAIPGPVVPLELEPLEKSVKEPEARMKQIQEHRR 124
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
A+K+ +E +S R KLSVA +D F+ P N+DFRGR YP+ PH H+ D+ RG
Sbjct: 125 ARKLAREHYSLRMTALYKLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRG 183
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L+FAEG PLG GLRWLKIHLANL+ G +K S D R+ + + + E+ DSA+NP+ G+
Sbjct: 184 MLQFAEGVPLGPDGLRWLKIHLANLY-GAKKKSSLDERVEYTDQMMSEVLDSADNPLTGA 242
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
RWW+ ++P+Q LA C+ +++A++S P +SH P+HQDGSCNGLQHYAALG + A
Sbjct: 243 RWWMHGDEPWQVLATCMEIAKAVRSPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGAR 302
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VNL+ ++P DVY+E+A V E D+ + +A +L D+V R++VKQTVMT
Sbjct: 303 QVNLIPADRPQDVYAEVAKLVEEARLHDAEQGHR------IATLLEDKVTRRVVKQTVMT 356
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
VYGVTFVG R QI+R+L++ D+R LF A+ Y
Sbjct: 357 IVYGVTFVGGRLQIERQLKDLD--LDERVLFEASAY 390
>gi|348679853|gb|EGZ19669.1| hypothetical protein PHYSODRAFT_354222 [Phytophthora sojae]
Length = 576
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/390 (42%), Positives = 234/390 (60%), Gaps = 43/390 (11%)
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545
M + +AL+ + W +NK+VL V+ IW GGN L R DV +P+ E +
Sbjct: 9 MDGILKALNLMAEVPWVINKEVLEVVLKIWEDGGNFGDLPTRTDVPLPDPDSPEFADDPA 68
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+ +VRK +++N+E HS RCDT KL VA KDE YYP+N+DFRGR YP+ P+LNH
Sbjct: 69 LYHRNVRKIEQLNREFHSLRCDTLYKLQVAEEFKDEPELYYPYNMDFRGRVYPIPPNLNH 128
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L SD+ R +L F + +PLG+ GLRW+KIHLAN+F GV+K S D R+ F + +L ++ S
Sbjct: 129 LGSDLSRSLLIFRDRKPLGERGLRWMKIHLANVF--GVDKCSFDERVEFADANLDKVVAS 186
Query: 666 AENPI--NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A NP+ WW A+ PF L C L A++S P +S++PIHQDGSCNGLQHYA
Sbjct: 187 ASNPLGEGDCAWWKGADYPFLALGVCFELRRAIESPDPTKYMSNIPIHQDGSCNGLQHYA 246
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD-PS-KHPQALLAKI---- 777
ALGR+ + VNLV +P+DVY +A V ++ D+ PS + +A+LA +
Sbjct: 247 ALGRDYSGGSQVNLVPAPRPSDVYMGVATEVMAKVENDAALGVPSVEEVRAMLAGVPDDD 306
Query: 778 -------------LIDQ-------------VDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
L+DQ + RK+VKQTVMTSVYGVT++GAR+QI RL
Sbjct: 307 TAETKARRIKLRTLLDQAQRKKCAQFLNGIITRKVVKQTVMTSVYGVTYIGARKQISARL 366
Query: 812 EE----KGHITDDR---QLFAAACYAAKVS 834
E KGHI D++ +++ A+CY A+++
Sbjct: 367 HETFLTKGHIMDEKLEDEIYHASCYCAELT 396
>gi|121483706|gb|ABM54185.1| mitochondrial RNA polymerase [Paracentrotus lividus]
Length = 1421
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 171/447 (38%), Positives = 261/447 (58%), Gaps = 24/447 (5%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKW 450
PA H + ++ K G ++ P +++ L ++AK + + +PM+ PP W
Sbjct: 790 PALYHMYTY-------RSFKHVGFIKPHPTLVD-LFQTAKDPNLEFDTNMLPMMTPPIPW 841
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G Y + +MR+ G+ + QE L+ + + +AL+ L S W +N +L
Sbjct: 842 TSVKFGAYPLSSTKIMRSKDGANQHQEVLEKTPSQELYPILDALNQLSSVPWIINNPILD 901
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKP-LSEDMT--EVQKWKWSVRKAKKINQERHSQRC 566
+ S++ + G+ V + P P ++ D++ E+ + A+K+ E HS R
Sbjct: 902 TVISVFRNNGSKELDVAQPASACPYPPRITSDVSREELAQIHRERAAARKMQAEMHSLRM 961
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
D KLS+A +++++ F++PHN+DFRGR YP PH NH +DV R +L FA GRPLG+
Sbjct: 962 DMLYKLSIADKVRNDV-FWFPHNMDFRGRVYPCPPHFNHFGNDVTRSLLLFARGRPLGEE 1020
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G RWLKIHL NL +G ++ S RL + + + EI DSA+NP++G++WW A++ +Q L
Sbjct: 1021 GFRWLKIHLVNL-TGHKKRCSVAERLQYAHDMMPEIMDSADNPLDGNKWWQGADEQWQTL 1079
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
AACI +++A++S P + ISHLPIHQDGSCNGLQHYAALGR+ + A VNL + P DV
Sbjct: 1080 AACIEVTKAIRSGDPTTYISHLPIHQDGSCNGLQHYAALGRDLIGAEQVNLHPFDVPQDV 1139
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
YS +A V ++ K+D+ K +A L + R +VKQTVMT VYGVT G R Q
Sbjct: 1140 YSGVAQMVEDLRKQDAEKGNK------IAIALDGLIKRNVVKQTVMTVVYGVTSYGGRRQ 1193
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKV 833
I ++L E+ ++ D++ FAA KV
Sbjct: 1194 ILKQLREEDDLSMDQKWFAAGYITLKV 1220
>gi|359817571|gb|AEV66615.1| mitochondrial RNA polymerase [Oxytricha trifallax]
gi|403362099|gb|EJY80764.1| DNA-dependent RNA polymerase family protein [Oxytricha trifallax]
Length = 1305
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 224/690 (32%), Positives = 366/690 (53%), Gaps = 69/690 (10%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L +RQ+K E ++E ++YK +I+ L L W L +I +QK+
Sbjct: 471 LFQRQLKIEELSFELSQNKYKNQLDSLIKIGRGDQLAVSHRYILSWMRLLETSIAEQQKI 530
Query: 238 ------QRTKKQKAAYAPHIELLPADKVAVI-VMHKMMGL-------------------V 271
K K Y ++ +P++K+A + V+H M L +
Sbjct: 531 FIKRGNLDPKNSKIGY--YLIQMPSEKIASLCVLHLMKHLFKQFIHDIRQFDDEDFTEKI 588
Query: 272 MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK--EKELL 329
HE + + +Q +G E+E++ ++ + K+ K+ D E++L + E+E+
Sbjct: 589 EQNHEIK-IPAIQLFDELGKLFEKELK-NTLMTGKKSQKKPD---DEEDILQEDMEQEIG 643
Query: 330 RKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADY- 388
+R N+L K + L+++ RD Q K+G+ L L+ + +++ + Y
Sbjct: 644 DER-NALNKK---IAKHMLMEDNFIGHLPRDVQLKIGAFLTNLMCKN--LKYKIGNKSYL 697
Query: 389 --SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVP 446
P ++ + I+ + T + + L L+ L+RS +PM+
Sbjct: 698 LLKPQVLKQQEKKYLGYIIFNRSFIETFVGELDKIHDLSLQ-LERS--------LPMIYQ 748
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
P WK + GGY + + + + K EA K + + + + LD LGS KWR+N++
Sbjct: 749 PAPWKNFTFGGYYLKQTKMAKVIPNFK--EAQKYLQRVDLTNMCQVLDILGSVKWRINRR 806
Query: 507 VLSVLESIWVSGGNIAGLVDR-NDVLI-PEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+L ++E +W GG + + R ND I PE + E K + K + N+E H+
Sbjct: 807 ILEIIEYVWSIGGGLGEVPKRFNDRQITPEMIKETNFRE----KLKLLKEHQKNRETHAL 862
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RC+ L+LS+A+ K Y+PHN+DFRGR YP+ PHLNH+ +DV RG+L+FAEG+PLG
Sbjct: 863 RCEFLLRLSIAQSFKHVNQIYFPHNMDFRGRVYPIPPHLNHMGADVNRGLLQFAEGQPLG 922
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
K GL WLK+H++N G +KL R A+ E+ + I A++P N WL +++P+Q
Sbjct: 923 KDGLFWLKVHVSNKI--GKDKLPIVDRAAYAESEMDMIHRCADDPKNNLD-WLQSDNPWQ 979
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
L+A I LS+A++ +P IS+ +H DGSCNG+QHYAALGR+ A VNL E+P
Sbjct: 980 TLSAMIELSQAVRCKNPEEYISYQHVHVDGSCNGMQHYAALGRDDRGARQVNLADSERPG 1039
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVY+ I V E ++ + +D + H +A+ L V+RK +KQTVMTSVYGVTF+GAR
Sbjct: 1040 DVYTAILRLVIEHIENE--QDQALHE---VAEGLKGNVNRKTIKQTVMTSVYGVTFIGAR 1094
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+QI+R+L+++ + +L+ A+ Y AKV+
Sbjct: 1095 KQIQRQLKDRKLYETNGELYKASQYLAKVT 1124
>gi|348550224|ref|XP_003460932.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Cavia porcellus]
Length = 1267
Score = 305 bits (780), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 228/379 (60%), Gaps = 14/379 (3%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEALDTLGST 499
+PML PP W GG+L P +M + G + L+S + EAL LG+
Sbjct: 680 MPMLCPPLPWSSSQAGGFLLSPIKLMGSLGGPSSTSSRLESCPPAQLHGALEALTQLGNC 739
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ-----KWKWSVRKA 554
WRVN ++L ++ +++ G V P PL + + Q + + V +
Sbjct: 740 AWRVNGRLLDLVLEVFLDKGCCRLGVPPPVSEAPRPPLDQLAPDTQPHLKAQLRQEVARC 799
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
K+ +E H R + +LS+A+ ++D F+ PHN+DFRGR YP PH NHL SD+ R +
Sbjct: 800 LKVAREMHGLRQEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARAL 858
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LEFA+GRPLG GL WLKIHL NL +G ++ RL+F + + +I DSAE P+ G +
Sbjct: 859 LEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREPLHARLSFADAMMDDILDSAERPMTGRK 917
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW+ A+DP+Q LA C+ ++ A++S P + +SHLP+HQDGSCNGLQHYAALGR+++ AA+
Sbjct: 918 WWMEADDPWQTLACCMEVARAVQSPDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAAS 977
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL + + P DVYS +A +V +D+ K +A++L + RK+VKQTVMT
Sbjct: 978 VNLASSDVPQDVYSGVAAQVEVFRAQDAQKG------VKVAQVLEGFIGRKVVKQTVMTV 1031
Query: 795 VYGVTFVGAREQIKRRLEE 813
VYGVT G R QI++RL E
Sbjct: 1032 VYGVTLYGGRLQIEKRLRE 1050
>gi|148699722|gb|EDL31669.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_d [Mus
musculus]
Length = 1144
Score = 305 bits (780), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 244/406 (60%), Gaps = 17/406 (4%)
Query: 417 GVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGSR 472
G+++ P L+ +A+ L VPML PP W + G YL + +MR T G+
Sbjct: 527 GILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGTT 586
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--RNDV 530
+ Q L+ + +AL LG+ WRVN +L ++ I+ G + V R++
Sbjct: 587 QHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEA 646
Query: 531 LIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
P + L T V K + + + K+ +E HS R + +LS+A+ ++ F+ P
Sbjct: 647 PRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWLP 705
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL +G + S
Sbjct: 706 HNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGDS 764
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S P + ISH
Sbjct: 765 LRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYISH 824
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
LP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E ++D+ +
Sbjct: 825 LPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEG-- 882
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 883 ----LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 924
>gi|390478301|ref|XP_003735468.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Callithrix jacchus]
Length = 1294
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 281/484 (58%), Gaps = 27/484 (5%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRH 399
++ EA + + + +PW Q +LG L E+L++ + P N A +P
Sbjct: 609 RQYWEALGVSEPPQEQPWPLPVQVELGRLLAEILVQA--TKMPSNLA-------KPRNSS 659
Query: 400 RFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
R +L H + + G ++ P ++ L +A+ + VPML PP W +
Sbjct: 660 RLVPLLYHVYSFRNVYQIGFLKPHPAYVQLLATAAEPTVTFEAVDVPMLCPPLPWTSPHT 719
Query: 456 GGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G +L P+ +MR G+ Q L++ + + L LG+ WRVN +VL ++ +
Sbjct: 720 GAFLLNPTKLMRAVDGTMHHQRLLENCPPAALHGALDTLTQLGNCAWRVNGRVLDLVLEL 779
Query: 515 WVSGG--NIAGLVDRNDVLIP-EKPL--SEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
+ G ++ ++V P E PL S + + + + + ++ K ++E HS R D
Sbjct: 780 FQDKGCPKLSVPAPPSEVAAPHEAPLPSSTGLVDKAELRRELARSLKESREMHSLRADAL 839
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A +++ F+ PHN+DFRGR YP PH NHL +D+ R +LEFA+G PLG GL
Sbjct: 840 YRLSLADHLRNCV-FWLPHNMDFRGRTYPCPPHFNHLGNDLARALLEFAQGCPLGPHGLD 898
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIH+ NL +G ++ R AF E + +I DSA+NP+ G +WW+ +E+P+Q LA C
Sbjct: 899 WLKIHVVNL-TGLKKREPLQVRHAFAEEVMDDILDSADNPMTGRKWWMGSEEPWQTLACC 957
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ +++A+++S P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVYS+
Sbjct: 958 MEIAKAVRTSDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSD 1017
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A +V E+ +R + S+ +A++L V RK+VKQTVMT VYGVT G R QI++
Sbjct: 1018 VAAQV-EVFRRQDARRGSR-----VAQVLEGFVTRKVVKQTVMTVVYGVTRFGGRLQIEK 1071
Query: 810 RLEE 813
RL E
Sbjct: 1072 RLRE 1075
>gi|390342830|ref|XP_001198516.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 1480
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 169/450 (37%), Positives = 261/450 (58%), Gaps = 30/450 (6%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKW 450
PA H + ++ K G ++ P +++ L ++AK + + +PML PP W
Sbjct: 849 PALYHMYT-------YRSFKHVGFIKPHPTLVD-LFQTAKDPNLEFDTNMLPMLTPPIPW 900
Query: 451 KGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
G Y + +MR+ G+ + + L+ + + +AL+ L + W +NK +L
Sbjct: 901 TSVRFGAYPLSSTKIMRSKDGAHQHLDLLEKTPPQELYPILDALNQLSTVPWIINKPILD 960
Query: 510 VLESIWVSGGNIAGLVDRNDVLIPEKPL------SEDMTEVQKWKWSVRKAKKINQERHS 563
+ S++ + G+ A V + P P E++ ++ + + + A+K+ E HS
Sbjct: 961 TVISVFRNSGSKALDVPQPASACPHPPRITSEVSREELAQIHRERAA---ARKMQAEMHS 1017
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
R D KLS+A ++++E F++PHN+DFRGR YP PH NH +DV R +L FA G PL
Sbjct: 1018 LRMDMLYKLSIADKVRNE-IFWFPHNMDFRGRVYPCPPHFNHFGNDVTRSLLLFARGMPL 1076
Query: 624 GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPF 683
G+ G RWLKIHL NL +G ++ S + RL + + L EI DSA+ P++G++WW +++ +
Sbjct: 1077 GEEGFRWLKIHLVNL-TGHKKRCSVEERLQYAHDMLPEIMDSADKPLDGNKWWQNSDEQW 1135
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
Q LA+C+ +++A++S P S ISHLPIHQDGSCNGLQHYAALGR+ + A VNL + P
Sbjct: 1136 QTLASCMEVTKAIRSGDPTSYISHLPIHQDGSCNGLQHYAALGRDLIGAEQVNLHPFDIP 1195
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
DVYS +A V E+ ++D+ K +A L + R +VKQTVMT VYGVT G
Sbjct: 1196 QDVYSGVAQMVEELRRQDAEKGNK------IALALAGHIKRNVVKQTVMTVVYGVTSYGG 1249
Query: 804 REQIKRRLEEKGHITDDRQLFAAACYAAKV 833
R QI ++L E+ +T D++ FAA KV
Sbjct: 1250 RRQILKQLREEDDLTMDQKWFAAGYITLKV 1279
>gi|449273005|gb|EMC82634.1| DNA-directed RNA polymerase, mitochondrial, partial [Columba livia]
Length = 1035
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 180/489 (36%), Positives = 275/489 (56%), Gaps = 38/489 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +LG ++ELL+ A V ++ +NP P + P H + +++ +
Sbjct: 374 WPYVLLMRLGMHMLELLVRAAKVPRNILNPR--LEPKLIPVLYHIYSF-------RSSGQ 424
Query: 416 YGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGS 471
G+++ P+ + + +A+ L +PML PP W N G ++ + +MR G+
Sbjct: 425 VGLIKPHPIFSQIMSDAAEATLTFNSSAIPMLCPPVPWTSPNFGAFVLNDTKLMRFVDGA 484
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ Q L+ + V +AL+ LG+ W++N+ VL ++ SI+ GN +R D+
Sbjct: 485 VQHQLLLEQCPPVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----ERLDIP 539
Query: 532 IPEK--------PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
P P ++ QK + + K K E HS R D KLS+A ++D+
Sbjct: 540 PPVSEAPRPPTVPGGSAGSKTQKHELLLYKKKV--AEMHSLRMDALYKLSIANYVRDKV- 596
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
F++PHN+DFRGR YP P+ NHL +DV R +L FAEGRPLG GL WLKIHL NL +G
Sbjct: 597 FWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLVNL-TGLK 655
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K + RL + + EI DSA+ P+ G RWW+ ++P+Q LA C+ +++A + P +
Sbjct: 656 KKNALQERLEYANEIMEEILDSADRPLTGRRWWMDTDEPWQALACCMEIAKASRCPDPAA 715
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
+SH PIHQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +V E K+D+
Sbjct: 716 YVSHFPIHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSVVAQQVEEFRKKDAE 775
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
+ +A++L + RK+VKQTVMT VYGVT G R Q+++RL+E ++ L
Sbjct: 776 QG------VRIAQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQMEKRLKEIDGFPEEY-L 828
Query: 824 FAAACYAAK 832
+ A+ Y K
Sbjct: 829 WEASQYLVK 837
>gi|456754161|gb|JAA74232.1| polymerase (RNA) mitochondrial (DNA directed) [Sus scrofa]
Length = 1219
Score = 302 bits (773), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 178/492 (36%), Positives = 276/492 (56%), Gaps = 37/492 (7%)
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPD---VRPA 396
++ EA L + + +PW +LG RL E+L++ V+ P N A +P D + P
Sbjct: 532 RQYWEALGLPEYPQEQPWSLSVLVQLGKRLAEMLVQA--VRMPSNLA--TPRDSNTLIPV 587
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGY 453
H + ++ ++ G+++ P + L+ +A+ L VPML PP W
Sbjct: 588 LYHVYSF-------RSFRQIGILKPHPAFRQLLETAAEGTLTFESTEVPMLCPPLPWTSP 640
Query: 454 NKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLE 512
+ G +L P+ +MR+ G+++ Q L+ + +AL LG+ W+VN VL ++
Sbjct: 641 HSGAFLLSPTKMMRSVEGTQQHQVLLERCRPAELHGALDALTQLGNCAWQVNGPVLDLVL 700
Query: 513 SIWVSGGNIAGLVDRNDVLIPEKP---------LSEDMTEVQKWKWSVRKAK--KINQER 561
++ + G V + P P L ++ QK + A+ K+ +E
Sbjct: 701 ELFNNKGCPHLGVPAPPLEAPRPPEGRQAPDACLQPNVPPTQKAELRRELARRLKMAREM 760
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
HS R + +LS+A+ ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GR
Sbjct: 761 HSLRTEALYRLSMAQHLRGRI-FWLPHNMDFRGRTYPFPPHFNHLGSDLARALLEFAQGR 819
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLG GL WLKIHL NL +G + S R + + +I DSA+ P+ G +WW+ A++
Sbjct: 820 PLGPQGLNWLKIHLVNL-TGLKKHESLQARRDLADELMEDILDSADRPMTGRKWWMEADE 878
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
P+Q LA C+ ++ A+++ P + +SH P+HQDGSCNGLQHYAALGR++ AA+VNL+ +
Sbjct: 879 PWQTLACCMEIARAVRAPDPTAYVSHFPVHQDGSCNGLQHYAALGRDSAGAASVNLMPSD 938
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
P DVYS +A +V ++D+ + +A++L + RK+VKQTVMT VYGVT
Sbjct: 939 LPQDVYSGVAAQVEVFRRQDAEQG------MRVAQVLEGFISRKVVKQTVMTVVYGVTRY 992
Query: 802 GAREQIKRRLEE 813
G R QI+RRL E
Sbjct: 993 GGRLQIERRLRE 1004
>gi|340380901|ref|XP_003388960.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Amphimedon queenslandica]
Length = 554
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 174/395 (44%), Positives = 245/395 (62%), Gaps = 19/395 (4%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+PM VPP+ W G +L PS V+RTH S QQ LK+ + + V ++L+ L
Sbjct: 10 IPMRVPPQPWTDATNGAFLLTPSSVVRTHYDSFHQQLLLKA--ADSLSPVLDSLNYLSLY 67
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEV----QKWKWSVRKA- 554
WRVN ++L + I+ GG+ + + +++ +KPL + + ++ +K + R A
Sbjct: 68 PWRVNNRILDMAIDIFNQGGDKSLDIPTDELF--DKPLPKYIKDIDEETRKKIYKERFAI 125
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
KK N E S + LS+ +D F+ PHN+DFRGR YP+ PHL+H+SSD+ R +
Sbjct: 126 KKENAENFSLKMTLLYNLSMCNHFRDCL-FWLPHNMDFRGRVYPIPPHLSHMSSDLSRSL 184
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L+F G+PLG+ GL WLKIH+A L G K S + RL + ++ + +I DSA+ P+ G
Sbjct: 185 LQFGVGQPLGRRGLEWLKIHIATL-HGAKSKSSLNERLEYTDSIIDDIADSADKPLEGRG 243
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW TA+ P+Q LAA + L +AL+S P + ISH IHQDGSCNGLQHYAA+GR+ A
Sbjct: 244 WWRTADVPWQTLAASMELMDALRSGDPENFISHTTIHQDGSCNGLQHYAAMGRDVYGAHQ 303
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNLV EKPA++Y+E+A V E K D+ D + +AKIL +V RK+VKQTVMT
Sbjct: 304 VNLVPSEKPANLYAEVAKLVDEKRKVDATSDKNVE----IAKILEGKVHRKVVKQTVMTV 359
Query: 795 VYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
VYGVTFVG R QI+++L KG I D+ LF A+ Y
Sbjct: 360 VYGVTFVGGRLQIEKQL--KGTIP-DKHLFEASSY 391
>gi|329663210|ref|NP_001192480.1| DNA-directed RNA polymerase, mitochondrial [Bos taurus]
Length = 1224
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 186/529 (35%), Positives = 286/529 (54%), Gaps = 46/529 (8%)
Query: 310 KRKKIIADTEEVLSKEKELLR-----KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAK 364
KRK++ EE+ + E L +V ++ EA + + +PW +
Sbjct: 499 KRKRLRNQVEELEQRYFEYLHLLASDTQVAEPCLPRQRWEALGVPEAPPEQPWPVSVLVQ 558
Query: 365 LGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDP 423
LG +L E+L+ VQ P + A P + P H + ++ ++ G+++ P
Sbjct: 559 LGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSF-------RSFRQIGILKPHP 609
Query: 424 LVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALK 479
+ + +A+ LI VPML PP W + G +L P+ +MR+ G+++ Q L+
Sbjct: 610 AFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEGTQQHQLLLE 669
Query: 480 SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---------------NIAGL 524
+ +AL LG+ WRVN +VL ++ ++ G G
Sbjct: 670 RCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPTEAPRPPEGR 729
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
L+PE D E+++ + + K+ +E S R D +LS+A+ +++ F
Sbjct: 730 QTPKGCLLPEAS-PADKAEMRR---ELARRLKVAREMQSLRADALYRLSLAQHLRNHV-F 784
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIHL NL +G +
Sbjct: 785 WLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLINL-TGLKK 843
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
+ S R + + + +I DSAE P+ G +WW+ A++P+Q LA C+ +++ + S P +
Sbjct: 844 RESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQVVHSPDPTTY 903
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
ISH P+HQDGSCNGLQHYAALGR++ A +VNL + P DVYSE+A +V E+ +R K
Sbjct: 904 ISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQV-EVFRRQDAK 962
Query: 765 DPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 963 QGVR-----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1006
>gi|296485392|tpg|DAA27507.1| TPA: CG4644-like [Bos taurus]
Length = 1224
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 267/479 (55%), Gaps = 41/479 (8%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPAFRHRFKTILKHPGQKTT 413
+PW +LG +L E+L+ VQ P + A P + P H + ++
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVYSF-------RSF 599
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-H 469
++ G+++ P + + +A+ LI VPML PP W + G +L P+ +MR+
Sbjct: 600 RQIGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLE 659
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---------- 519
G+++ Q L+ + +AL LG+ WRVN +VL ++ ++ G
Sbjct: 660 GTQQHQLLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPP 719
Query: 520 -----NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
G L+PE D E+++ + + K+ +E S R D +LS+
Sbjct: 720 TEAPRPPEGRQTPKGCLLPEAS-PADKAEMRR---ELARRLKVAREMQSLRADALYRLSL 775
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A+ +++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLKIH
Sbjct: 776 AQHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIH 834
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
L NL +G ++ S R + + + +I DSAE P+ G +WW+ A++P+Q LA C+ +++
Sbjct: 835 LINL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQ 893
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
+ S P + ISH P+HQDGSCNGLQHYAALGR++ A +VNL + P DVYSE+A +V
Sbjct: 894 VVHSPDPTTYISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQV 953
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
E+ +R K + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 954 -EVFRRQDAKQGVR-----VAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1006
>gi|326934436|ref|XP_003213296.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Meleagris gallopavo]
Length = 1203
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 173/472 (36%), Positives = 269/472 (56%), Gaps = 40/472 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +LG L+E+L+ V ++ +NP P + P H + +++ +
Sbjct: 543 WPYVLLMRLGMYLLEILVHAVKVPRNTLNPR--LPSKLIPVLYHIYSF-------RSSWQ 593
Query: 416 YGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGS 471
G+++ P+ + + +A+ ML +PML PP W + G ++ + +MR G+
Sbjct: 594 VGLIKPHPIFSQIVSDAAEAMLTFNSSAIPMLCPPVPWTSPHFGAFVLGDTKLMRYVDGA 653
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ Q+ L + V +AL+ LG+ W++N+ VL ++ SI+ GN ++ D+
Sbjct: 654 IQHQQLLDQCPQXNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDI- 707
Query: 532 IPEKPLSEDMTEV----------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
P+SE + K + KK E HS R D KLS+A ++D+
Sbjct: 708 --PPPVSEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK 765
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
F++PHN+DFRGR YP P+ NHL +DV R +L FAEGRPLG GL WLKIHL NL +G
Sbjct: 766 -VFWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TG 823
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
+K + RL + + EI DSA++P+ G +WW+ ++P+Q LA C+ +++A +S +P
Sbjct: 824 LKKKNALQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPNP 883
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ +SH P+HQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +V E K+D
Sbjct: 884 AAFVSHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCSVPQDVYSAVAQQVEEFRKKD 943
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ + +A++L + RK+VKQTVMT VYGVT G R Q+++RL+E
Sbjct: 944 AEEG------LRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKE 989
>gi|363743780|ref|XP_418204.3| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Gallus gallus]
Length = 1236
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 174/472 (36%), Positives = 268/472 (56%), Gaps = 40/472 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +LG L+E+L+ V ++ +NP P + P H + +++ +
Sbjct: 576 WPYVLLMRLGMYLLEILVHAVKVPRNTLNPR--LPSKLIPVLYHIYSF-------RSSWQ 626
Query: 416 YGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THGS 471
G+++ P+ + + +A+ ML +PML PP W + G ++ + +MR G+
Sbjct: 627 VGLIKPHPIFSQIVSDAAETMLTFNSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGA 686
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL 531
+ Q+ L + V +AL+ LG+ W++N+ VL ++ SI+ GN ++ D+
Sbjct: 687 IQHQQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDI- 740
Query: 532 IPEKPLSEDMTEV----------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
P+SE + K + KK E HS R D KLS+A ++D+
Sbjct: 741 --PPPVSEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDK 798
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
F++PHN+DFRGR YP P+ NHL +DV R +L FAEGRPLG GL WLKIHL NL +G
Sbjct: 799 -VFWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TG 856
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
+K + RL + + EI DSA++P+ G +WW+ ++P+Q LA C+ +++A +S P
Sbjct: 857 LKKKNALQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDP 916
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH P+HQDGSCNGLQHYAALGR+ + A +VNL+ P DVYS +A +V E K+D
Sbjct: 917 AAFISHFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCNVPQDVYSAVAQQVEEFRKKD 976
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ + +A++L + RK+VKQTVMT VYGVT G R Q+++RL+E
Sbjct: 977 AEEG------LRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKE 1022
>gi|326437615|gb|EGD83185.1| single-subunit RNA polymerase [Salpingoeca sp. ATCC 50818]
Length = 1301
Score = 298 bits (763), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 196/565 (34%), Positives = 303/565 (53%), Gaps = 54/565 (9%)
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKP--WG 358
S LE+T + +I++D E++ +K K L+K + E+ + NE++ W
Sbjct: 556 SDLERTVYARYHQIMSDREQM---KKHSPSKLWRQLMKEYSI-ESGVSVPNEDSGLAFWT 611
Query: 359 RDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGV 418
+G +++L++ A + A+ PAF H ++ + TKR+G
Sbjct: 612 PRMLGAVGGEMIDLVLRKATLSAITGRAEDKE---LPAFYHTYEF-------EGTKRFGF 661
Query: 419 VECDPLVLE------------GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V + G + + + +PMLV PK W G G L P +M
Sbjct: 662 IRTHDTVQDYSYNFVATNAQLGKNVFRRSIDAVNLPMLVLPKPWTGVRTGASLVSPVTIM 721
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RT S AL + T + + +F+AL L S WRVN +V V+ + + + + L
Sbjct: 722 RTFDSHFHHYALLAETTHLLDDMFDALTYLSSMAWRVNTKVFDVVRAAFEAEVGVEELAI 781
Query: 527 RNDVL----IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
++ +P + + K++ V + +K + E +SQR LKL VA+ ++D++
Sbjct: 782 APHIIQPPPVPARTADMSAEDKAKYQRQVMEHRKQSSEAYSQRTTLHLKLMVAQALRDQD 841
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
FY PHNLDFRGRAY + P+L H+ D+ RG+L FAE +PLGK+GLRWLKIHLAN++ G
Sbjct: 842 -FYLPHNLDFRGRAYTIAPYLTHIGDDLSRGLLVFAEKKPLGKNGLRWLKIHLANVY--G 898
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPI----NGS-RWWLTAEDPFQCLAACINLSEALK 697
+K S D R F E++++ + ++ NP+ +G WWL ++P+Q LA C L +A+
Sbjct: 899 NDKCSLDDREKFAEDNMHHVEETVRNPLRFLEDGEPMWWLQGDNPWQVLAVCNELHDAMC 958
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV---AGEKPADVYSEIAVRV 754
+ +P S P+HQDG+CNGLQHYAALGR+ A VNLV ++P DVYS +A +
Sbjct: 959 APNPEEFESGFPVHQDGTCNGLQHYAALGRDVEGARHVNLVRVPEDDRPQDVYSAVARTI 1018
Query: 755 HEIMKRDSNKD-------PSKHPQAL-LAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAR 804
++R + D P H A LA +L+ Q + RK+VKQTVMT+VYGVTFVG R
Sbjct: 1019 DTHLQRHAQGDFSSTSKLPVSHEVAQELASLLVAQGPMKRKIVKQTVMTNVYGVTFVGGR 1078
Query: 805 EQIKRRLEEKGHITDDRQLFAAACY 829
EQI R+L + + +++A A Y
Sbjct: 1079 EQIGRQL-KAAKVVPPEKVYATASY 1102
>gi|355712786|gb|AES04465.1| polymerase mitochondrial [Mustela putorius furo]
Length = 375
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 155/378 (41%), Positives = 229/378 (60%), Gaps = 14/378 (3%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PML PP W + G +L P+ +MR+ G+ + Q L S + +AL LG+
Sbjct: 1 PMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTVQHQRLLDSCPPADLHGALDALTQLGNCA 60
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSEDMTEVQKW--KWSVRKAK 555
WRVN +VL ++ ++ + G V P P L + QK + + +
Sbjct: 61 WRVNGRVLDLVLELFTAKGCPHLGVPAPASEAPRPPDGRLPPGASPAQKAEVRRELARCL 120
Query: 556 KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVL 615
K+ +E HS R D +LS+A+ ++ F+ PHN+DFRGR YP PH +HL SD+ R +L
Sbjct: 121 KVAREMHSLRSDALYRLSLAQHLRHRV-FWLPHNMDFRGRTYPCPPHFHHLGSDLARALL 179
Query: 616 EFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRW 675
EFA+GRPLG GL WLK+HL NL +G ++ S RLAF + + +I DSA+ P+ G +W
Sbjct: 180 EFAQGRPLGARGLDWLKVHLVNL-TGLKKRESLQARLAFADEVMKDILDSADRPMTGRKW 238
Query: 676 WLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAV 735
W+ ++P+Q LA C+ ++ A+++ P + +SH P+HQDGSCNGLQHYAALGR+++ AA+V
Sbjct: 239 WMQVDEPWQALACCMEIARAVRAPDPAAYVSHFPVHQDGSCNGLQHYAALGRDSVGAASV 298
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
NL+ + P DVYS +A +V ++D+ + +A++L + RK+VKQTVMT V
Sbjct: 299 NLLPSDVPQDVYSGVAAQVEVFRRQDAKRGVG------VAQVLEGFISRKVVKQTVMTVV 352
Query: 796 YGVTFVGAREQIKRRLEE 813
YGVT G R QI+RRL E
Sbjct: 353 YGVTRYGGRLQIERRLRE 370
>gi|332026140|gb|EGI66288.1| DNA-directed RNA polymerase, mitochondrial [Acromyrmex echinatior]
Length = 1257
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 210/620 (33%), Positives = 313/620 (50%), Gaps = 63/620 (10%)
Query: 223 WFGPLSEAIER-----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
W ++EA ER +QK + K P +++L ++ +M+++ L E
Sbjct: 462 WKSTVTEAFERNLTYLKQKETKMKSDLKILYPFLQVLSKEEYIKAIMNEINQLTKFS-EG 520
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV---- 333
+ + +G I + + F K K+ +I ++ ++ K E K+
Sbjct: 521 FSHNMTYLYLTMGQYIYKR---YEFQRKMKD----GVIDNSIQIYKKYLEWYTKKNPADR 573
Query: 334 --NSLIKSKRVM-EAQKL-LKNEETKP-WGRDTQAKLGSRLVELLIETAYVQHPVNPADY 388
N IK ++++ EAQK + E + P W R+T +G L +++ + H P
Sbjct: 574 INNGRIKWQQLVDEAQKSGMCCELSVPEWSRNTMINVGKFLYNIIVNDVKIPHVPKPG-- 631
Query: 389 SPPDVRPAFRHRFKT---------ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP 439
+P PAF F+ I HP + + Y + L E +
Sbjct: 632 APERQIPAFYLLFRLHSNNFFKEEIKPHP--QLYRFYKDAHSETLSFETI---------- 679
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+P+ PP+ W N GGYL + +R K L++ + VF+ L+ LGS
Sbjct: 680 LLPIFSPPRPWVNVNTGGYLLSKAAFVR-DPYMKPSHLLRNTPTKQLYPVFDCLNQLGSI 738
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDM--TEVQKWKWSVRKA--- 554
W++N +L +L I+ GG+ V + +IP S D+ +E K + K
Sbjct: 739 PWKINIPMLDILIQIFRDGGSKELNVPQPSTVIPS---STDIIASETNKSPKEISKLLLQ 795
Query: 555 -KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
K++ E HS CD KLS+A +D+ F+ PHNLDFRGRAYP+ PHL HLSSD+ R
Sbjct: 796 FKRMKNEMHSLWCDCLYKLSLANHFRDK-VFWMPHNLDFRGRAYPVPPHLTHLSSDLGRS 854
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+L FA+G+PLG GL WLKIH N+ SG ++ RL F L I DSA NP+ G
Sbjct: 855 ILMFAQGKPLGSDGLDWLKIHAINM-SGLKKREPMYKRLEFANEILDLIVDSARNPLTGK 913
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A++P+Q LA C + AL+S + I LPIHQDGSCNGLQHYAALGR+ + A
Sbjct: 914 MWWTKADEPWQTLATCKEIDNALQSPNVEKYICRLPIHQDGSCNGLQHYAALGRDLIGAK 973
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
+VNL ++P DVYS +A V + K D++ +A++L + RK++KQTVMT
Sbjct: 974 SVNLYPSDRPQDVYSVVAKMVDDYRKSDADAGDK------IAQVLEGHISRKVMKQTVMT 1027
Query: 794 SVYGVTFVGAREQIKRRLEE 813
+VYGVT GAR QI R+L +
Sbjct: 1028 TVYGVTKFGARLQIARQLSD 1047
>gi|83376024|gb|ABC17816.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 169/410 (41%), Positives = 245/410 (59%), Gaps = 32/410 (7%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDR-------NDVLIPEKPLSE----DMTEVQKWK 548
W +NK +L + ++ + R D+ P + +S+ DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAISKAKFRDMTRDQYTA 701
Query: 549 WSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P+L
Sbjct: 702 FQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYL 760
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 761 NHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSLFL 819
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQHYA
Sbjct: 820 DSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYA 879
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQV 782
A+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L +
Sbjct: 880 AMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNGAI 932
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 933 QRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLA 982
>gi|83376020|gb|ABC17814.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 939
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+ + + N + +AL+ LGST
Sbjct: 506 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVHTPRSANKLLPTLDALNQLGST 561
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 562 PWIINKPILECIVEVFRHPKKYGAYLKR--VGIPRHPENIEPPAEVRSKAKFRDMTRDQY 619
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 620 SAFQQGQAQRQAFIQLQAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 678
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 679 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGLXKKSSIRERMQYAEDNLSL 737
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S+ P + +SHLPIHQDGSCNGLQH
Sbjct: 738 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSADPANYVSHLPIHQDGSCNGLQH 797
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + HP A+L L
Sbjct: 798 YAAMGRDSLGAKFVNLIPSECPQDVYGEIAF----ILERKRSEDAQAGHPIAIL---LNG 850
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A
Sbjct: 851 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIESPVIPSEKLGEASVYLA 902
>gi|83376040|gb|ABC17824.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1172
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 168/410 (40%), Positives = 245/410 (59%), Gaps = 32/410 (7%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDR-------NDVLIPEKPLSE----DMTEVQKWK 548
W +NK +L + ++ + R D+ P + +S+ DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKAKFRDMTRDQYTA 701
Query: 549 WSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P+L
Sbjct: 702 FQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYL 760
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + +++L
Sbjct: 761 NHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLFL 819
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQHYA
Sbjct: 820 DSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYA 879
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQV 782
A+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L +
Sbjct: 880 AMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNGAI 932
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 933 QRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLA 982
>gi|83376038|gb|ABC17823.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 168/410 (40%), Positives = 245/410 (59%), Gaps = 32/410 (7%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDR-------NDVLIPEKPLSE----DMTEVQKWK 548
W +NK +L + ++ + R D+ P + +S+ DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKRVGIPRHPEDIEPPSEAMSKAKFRDMTRDQYTA 701
Query: 549 WSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P+L
Sbjct: 702 FQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPPYL 760
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + +++L
Sbjct: 761 NHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYADDNLSLFL 819
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQHYA
Sbjct: 820 DSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQHYA 879
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQV 782
A+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L +
Sbjct: 880 AMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNGAI 932
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 933 QRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLA 982
>gi|83376032|gb|ABC17820.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1171
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLA 982
>gi|83376026|gb|ABC17817.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 292 bits (748), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLA 982
>gi|83376034|gb|ABC17821.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 292 bits (748), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 243/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSXARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLSEASVYLA 982
>gi|83376028|gb|ABC17818.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 170/412 (41%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 KAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G WWL +E+P+Q L ACI L AL SS P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKMWWLESEEPWQTLGACIELRNALSSSDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLA 982
>gi|449491870|ref|XP_002193465.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Taeniopygia
guttata]
Length = 1263
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 204/632 (32%), Positives = 323/632 (51%), Gaps = 57/632 (9%)
Query: 223 WFGPLSEAIEREQKMQRTKKQKAAY---APHIELLPADKVAVIVMHKMMGLVMAGHEDRC 279
W + +A++ ++ K+ + Y P++ LLP ++ I+M + L G
Sbjct: 468 WHDAILQALQNSKRSMARPKRLSKYNILYPYLCLLPDEEYVDIMMQVLNDLSPQGES--- 524
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE----LLRKRVNS 335
+ A +G + I L + K ++I + ++L+K+ + + R+
Sbjct: 525 --LAVLARELGSKVYDRYIIQRKLRSGQLEKVQEIYENYIQLLAKDSQPKQYMPREYWEK 582
Query: 336 LIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV-QHPVNPADYSPPDVR 394
L+ + L +T W +LG ++ELL++ V ++ +N S P
Sbjct: 583 LVAEAGFGPSLNL----KTCSWPCVLLMRLGMHMLELLVKAVKVPRNILNRRLESKP--V 636
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWK 451
P H + + + G++ P+ + + +A+ L +PML PP W
Sbjct: 637 PVLYHVYSFY-------SNWQVGLIRPHPVFSQLVSNAAETTLTFNSSAMPMLCPPVPWT 689
Query: 452 GYNKGGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
G ++ + +MR + Q+ L+ + V +AL+ LG+ W++N+ VL +
Sbjct: 690 SPTFGAFVLNDTKLMRFMDETTYHQQLLEQCPLVNLHAVLDALNQLGNCAWKINQPVLDI 749
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS----------VRKAKKINQE 560
+ SI+ GN ++ D+ PLSE S V KK E
Sbjct: 750 IISIFNDKGN-----EKLDI---PPPLSEAPKPPTPPSNSSSWSKSFKHEVFLCKKKAAE 801
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
HS R D KLS+A ++D+ F++PHN+DFRGR YP P+ NHL +DV R +L FAEG
Sbjct: 802 MHSLRMDALYKLSIANYVRDKV-FWFPHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEG 860
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
RPLG GL WLKIHL NL +G +K + RL + + +I DSA+ P+ G +WW+ +
Sbjct: 861 RPLGPRGLDWLKIHLINL-TGLKKKNALQERLEYANEIMEDILDSADRPLTGRKWWMDTD 919
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
+P+Q LA C+ +++A +S P + ISH P+HQDGSCNGLQHYAALGR+ AA+VNLV
Sbjct: 920 EPWQALACCMEIAKASRSPDPAAYISHFPVHQDGSCNGLQHYAALGRDLSGAASVNLVPC 979
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
P DVYS +A +V E K+D+ + +A++L + RK+VKQTVMT VYGVT
Sbjct: 980 GLPQDVYSAVAQQVEEFRKKDAERGLK------VAQVLQGFISRKVVKQTVMTVVYGVTR 1033
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
G R QI++RL+E ++ L+ A+ Y K
Sbjct: 1034 YGGRLQIEKRLKEIDEFPEE-YLWEASHYLVK 1064
>gi|83376042|gb|ABC17825.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPDEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLA 982
>gi|270012086|gb|EFA08534.1| hypothetical protein TcasGA2_TC006188 [Tribolium castaneum]
Length = 1258
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/493 (36%), Positives = 269/493 (54%), Gaps = 45/493 (9%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT---ILKHPGQK 411
+ W T +G L ++++ V A+ + PAF F+T +LK
Sbjct: 591 RTWSPSTLQTIGKFLYKIVMHDLKVDVNAMKANIKHKNNHPAFYTVFRTQGRVLKEE--- 647
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMR 467
V+ P VL L R++ + + +PM PP W + GGYL +P V+R
Sbjct: 648 -------VKPHP-VLARLFRASMPETLTFPANELPMFCPPVPWTCVDNGGYLIVPCEVVR 699
Query: 468 TH-GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
+ Q++ L + +AL+ L + W+VN VL V+ ++ +GG+
Sbjct: 700 LPPQATSQKQRLYQSEVQQLYPPLDALNQLAAVAWKVNTDVLDVILEVFNNGGSAK---- 755
Query: 527 RNDVLIPEKP--------LSEDMTEVQKWKWSVRKA--KKINQERHSQRCDTELKLSVAR 576
+ +PE P ++ DM + QK+K +K ++ E +S CD +LS+A
Sbjct: 756 ---LDVPEPPTALARPQAITNDMDKAQKFKLFRQKLQYRRKKAEMYSLWCDCLYRLSLAN 812
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ + F+ PHN+DFRGR YP+ PHLNHL SD+ R +L FAE RPLG GL WLK+HL
Sbjct: 813 HFR-SDIFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLVFAESRPLGPDGLNWLKLHLI 871
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NL +G ++ S RLA+ + + +I DSA++P+ G +WW +E+P+Q LA CI +++A
Sbjct: 872 NL-TGLKKRDSITDRLAYADTIMDDILDSADSPLTGRQWWAESEEPWQTLACCIEIAKAT 930
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
+S +P + SH P+HQDGSCNGLQHYAALGR++ A +VNL E P DVYS + V +
Sbjct: 931 RSGNPETYRSHFPVHQDGSCNGLQHYAALGRDSAGAYSVNLCPSEVPQDVYSAVVALVEQ 990
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
D+ +AK L V RK++KQT+MT+VYGVT GAR QI R+L++
Sbjct: 991 QRLVDAANGVE------VAKALHGFVKRKVIKQTIMTTVYGVTKYGARLQIARQLKDIDD 1044
Query: 817 ITDDRQLFAAACY 829
D ++AA+ Y
Sbjct: 1045 FPKDL-VWAASSY 1056
>gi|242009042|ref|XP_002425302.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
gi|212509067|gb|EEB12564.1| DNA-directed RNA polymerase, putative [Pediculus humanus corporis]
Length = 1102
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/444 (38%), Positives = 257/444 (57%), Gaps = 27/444 (6%)
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDR-SAKHMLIPY--VPMLVPPKKWKGYNKGG 457
F TI++ +K+ + ++C P++ + + + H+ IP PM+ PPK WK GG
Sbjct: 495 FYTIMRQEKEKSLEE---IKCHPIISKLYQQCNLDHLYIPAKECPMVCPPKPWKSVTDGG 551
Query: 458 YLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
YL S +R Q K + + + F+AL+TL +T W VNK+VL V ++
Sbjct: 552 YLLSTSDFVRVPKEPNSQILDFKPINSHQLYVTFDALNTLQNTPWIVNKEVLDVALEVFQ 611
Query: 517 SGGNIAGLVDRNDVLIP---EKPL--SEDMTEVQKWKWSVRKAKKINQERHSQR---CDT 568
+GG+ +D + P PL + +M++ ++++ +K K ER +Q C+
Sbjct: 612 NGGD--DELDVPSFVTPVNNHNPLNITSEMSQEERFE-EYKKKKSSAMERQNQYALWCEA 668
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
KLS+A ++ F+ PHN DFRGR YP+ PHL+H+ D+ R +L FA+G+PLG G
Sbjct: 669 LYKLSLANHYRNR-IFWLPHNYDFRGRVYPIPPHLSHIGGDLFRSLLIFAKGKPLGPKGF 727
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLK H+ NL +G +K S RL + L EI DSAE P+ G++WW+ +E+P+Q LAA
Sbjct: 728 DWLKTHVINL-TGIKKKESLADRLKYANEMLPEILDSAEKPLTGNKWWVKSEEPWQTLAA 786
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C+ + + LK S+P +SH P+HQDGSCNGLQHYAALGR+ A +VNL + P DVYS
Sbjct: 787 CMEIKKVLKHSNPEEYVSHFPVHQDGSCNGLQHYAALGRDYAGAKSVNLTPSQVPQDVYS 846
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
I + E+ +D+ +A+ L + RK+VKQT+MT+VYGVT GA QI
Sbjct: 847 SIIEIIEEMRAKDAENGLK------IAQKLEGYIKRKVVKQTIMTTVYGVTRYGAIRQII 900
Query: 809 RRLEEKGHITDDRQLFAAACYAAK 832
++LE+ + + L+ AA Y ++
Sbjct: 901 KQLEDIPNFP-QKDLWPAATYLSE 923
>gi|91088063|ref|XP_967600.1| PREDICTED: similar to CG4644 CG4644-PA, partial [Tribolium
castaneum]
Length = 1176
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/400 (40%), Positives = 235/400 (58%), Gaps = 27/400 (6%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTH-GSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+PM PP W + GGYL +P V+R + Q++ L + +AL+ L +
Sbjct: 591 LPMFCPPVPWTCVDNGGYLIVPCEVVRLPPQATSQKQRLYQSEVQQLYPPLDALNQLAAV 650
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--------LSEDMTEVQKWKWSV 551
W+VN VL V+ ++ +GG+ + +PE P ++ DM + QK+K
Sbjct: 651 AWKVNTDVLDVILEVFNNGGSAK-------LDVPEPPTALARPQAITNDMDKAQKFKLFR 703
Query: 552 RKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
+K ++ E +S CD +LS+A + + F+ PHN+DFRGR YP+ PHLNHL SD
Sbjct: 704 QKLQYRRKKAEMYSLWCDCLYRLSLANHFR-SDIFWLPHNMDFRGRVYPVPPHLNHLGSD 762
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+ R +L FAE RPLG GL WLK+HL NL +G ++ S RLA+ + + +I DSA++P
Sbjct: 763 LARSMLVFAESRPLGPDGLNWLKLHLINL-TGLKKRDSITDRLAYADTIMDDILDSADSP 821
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
+ G +WW +E+P+Q LA CI +++A +S +P + SH P+HQDGSCNGLQHYAALGR++
Sbjct: 822 LTGRQWWAESEEPWQTLACCIEIAKATRSGNPETYRSHFPVHQDGSCNGLQHYAALGRDS 881
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
A +VNL E P DVYS + V + D+ +AK L V RK++KQ
Sbjct: 882 AGAYSVNLCPSEVPQDVYSAVVALVEQQRLVDAANGVE------VAKALHGFVKRKVIKQ 935
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
T+MT+VYGVT GAR QI R+L++ D ++AA+ Y
Sbjct: 936 TIMTTVYGVTKYGARLQIARQLKDIDDFPKDL-VWAASSY 974
>gi|83376044|gb|ABC17826.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLA 982
>gi|322785441|gb|EFZ12112.1| hypothetical protein SINV_03744 [Solenopsis invicta]
Length = 1179
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 211/638 (33%), Positives = 313/638 (49%), Gaps = 66/638 (10%)
Query: 222 GWFGPLSEAIER-----EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHE 276
W +++A ER +QK + K P +++LP ++ +++++ L E
Sbjct: 383 SWKSSVAQAFERNLTYLKQKETKMKTDFKILYPFLQVLPKEEYINAILNEISQLTKFS-E 441
Query: 277 DRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE-LLRKRVNS 335
+ + +G I + + F +K K+ II ++ EV K E ++K +
Sbjct: 442 GYSYTMTHLYLTLGTYIYKR---YEFQQKMKD----GIIENSIEVYKKYLEWYMQKDSDD 494
Query: 336 LIKSKRVMEAQKLLKNEETKP----------WGRDTQAKLGSRLVELLIETAYVQHPVNP 385
I + RV Q L +E K W R+T +G L +++ + H P
Sbjct: 495 KIGNGRVKWQQ--LVHEAGKSGICCEMAVPEWSRNTLINVGKFLYNIIVNDVKIPHVPKP 552
Query: 386 ADYSPPDVRPAFRHRFKT---------ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM 436
+P PAF F+ I HP + Y + L E +
Sbjct: 553 G--APERQIPAFYLLFRLHSNKFLMEEIKPHP--HLHRFYKDSHSETLSFETIS------ 602
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTL 496
+P PP+ W N GGYL +R K LK+ + V + ++ L
Sbjct: 603 ----LPTFSPPRPWIDINTGGYLLSKVPFVR-DIYMKPSRLLKNTPTKQLYPVLDCVNQL 657
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMT-EVQKWKWSVRKA- 554
GS WR+N +L +L I+ GG+ V + ++P SE ++ E K + K
Sbjct: 658 GSIPWRINVPILDILIQIFREGGSKELNVPQPSTVVPSS--SEVISNETDKNSREIAKLL 715
Query: 555 ---KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
K+ E ++ CD KLS+A +D+ F+ PHNLDFRGRAYP+ PHL HLSSD+
Sbjct: 716 LQLKRTRNEMYALWCDCLYKLSLANHFRDK-VFWMPHNLDFRGRAYPIPPHLTHLSSDLG 774
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +L FA+G+PLG GL WLKIH N+ +G ++ RL F L I DSA NP+
Sbjct: 775 RSILMFAQGKPLGPEGLDWLKIHTINM-TGLKKREPMHKRLEFANKILDLIVDSARNPLT 833
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
G WW A++P+Q LAAC + AL++ +P I LPIHQDGSCNGLQHYAALGR+ +
Sbjct: 834 GEMWWAKADEPWQTLAACKEIDNALQAPNPEKYICRLPIHQDGSCNGLQHYAALGRDLIG 893
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
A +VNL ++P DVYS +A V E K D+ +A+ L V RK++KQTV
Sbjct: 894 AKSVNLYPSDRPQDVYSVVANMVDEYRKIDAEAGNK------IARALEGHVSRKVMKQTV 947
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
MT+VYGVT GAR QI R+L + D + +++ + Y
Sbjct: 948 MTTVYGVTKFGARLQIARQLSDLKDF-DQKYVWSGSMY 984
>gi|83376030|gb|ABC17819.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 289 bits (740), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 169/412 (41%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL SS P + IS LPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSSDPTNYISXLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPLDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + I +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPIIPSDKLGEASVYLA 982
>gi|83376022|gb|ABC17815.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAFIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNYISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLA 982
>gi|83376036|gb|ABC17822.1| mitochondrial RNA polymerase [Tigriopus californicus]
Length = 1176
Score = 289 bits (739), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 242/412 (58%), Gaps = 36/412 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEALDTLGST 499
+PM+VPP+ W + GGYL + R R +EA+++ + N + +AL+ LGST
Sbjct: 586 LPMVVPPRPWVSDSSGGYLLHEVEMTR----RPVEEAVETPRSPNTLLPTLDALNQLGST 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-------------EDMTEVQK 546
W +NK +L + ++ + R V IP P + DMT Q
Sbjct: 642 PWIINKPILECIVEVFRHPKKYNAYLKR--VGIPRHPENIEPPSEAMSKARFRDMTRDQY 699
Query: 547 WKWSVRKAKK-----INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ +A++ + E +S CDT +LS+A+ +D Y+PHN+DFRGR YP+ P
Sbjct: 700 TAFQQGQAQRQAYIQLKAESYSLWCDTLYRLSIAQHFQDRV-LYFPHNIDFRGRVYPIPP 758
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+LNH+ D+ R +L FAEG+PLG GL WLK+H NL SG +K S R+ + E++L
Sbjct: 759 YLNHMGCDLSRSLLVFAEGKPLGPKGLDWLKLHTVNL-SGFKKKSSIRERMQYAEDNLSL 817
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
DSA +P G +WWL +E+P+Q L ACI L AL S P + ISHLPIHQDGSCNGLQH
Sbjct: 818 FLDSASDPFGGKKWWLESEEPWQTLGACIELRNALSSPDPTNXISHLPIHQDGSCNGLQH 877
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILID 780
YAA+GR++L A VNL+ E P DVY EIA I++R ++D + +P A+L L
Sbjct: 878 YAAMGRDSLGAKFVNLIPSECPQDVYGEIA----SILERKRSEDAQAGNPIAIL---LNG 930
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE-KGHITDDRQLFAAACYAA 831
+ RK++KQTVMT+VYGVT GA+ QI ++L++ + + +L A+ Y A
Sbjct: 931 AIQRKVIKQTVMTTVYGVTKYGAKLQIAKQLKDIENPLIPSDKLGEASVYLA 982
>gi|391337783|ref|XP_003743244.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1172
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 161/381 (42%), Positives = 219/381 (57%), Gaps = 19/381 (4%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
++PML PPK W +L +P + Q A+ V + +AL+ L
Sbjct: 584 FLPMLCPPKPWTRPKDTPFLISGVPLIRVMPDVGEHQMCAINDVPPENIYPALDALNVLS 643
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKI 557
T WRVN VL VL ++++ G+ V ++ P K + D+ ++ S + + +
Sbjct: 644 RTPWRVNVPVLDVLTTVFLGEGDKKLSVPKD----PAKMVQPDIAAIRAQSKSAARTRAM 699
Query: 558 N-----QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
E S CD KLS+A K + F++PHN+DFRGR YP PH +HL DV R
Sbjct: 700 QFRREKAENFSLWCDMLYKLSIAHHFK-HDVFFFPHNMDFRGRVYPCPPHFHHLGGDVIR 758
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
G+L FAEG+PLG+ GL WLK+HL NL +G ++ + R+AF + + EI DSA+NP+ G
Sbjct: 759 GLLLFAEGKPLGEKGLWWLKLHLINL-TGFKKRRPIEERVAFADEIMDEILDSAQNPLTG 817
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+WW T++DP+Q LAAC ++ AL S P I HLPIHQDGSCNGLQHYAALGR+ A
Sbjct: 818 RKWWQTSDDPWQTLAACKEIANALASPEPEKYICHLPIHQDGSCNGLQHYAALGRDLEGA 877
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNLV + P DVYS IA V + + DS +A IL + RK+VKQTVM
Sbjct: 878 LQVNLVPMDAPQDVYSGIADTVESLRQIDSANG------VEIATILEGHIKRKVVKQTVM 931
Query: 793 TSVYGVTFVGAREQIKRRLEE 813
T VYGVT GA QI R+L++
Sbjct: 932 TVVYGVTRFGAHLQILRQLQD 952
>gi|193599102|ref|XP_001946877.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Acyrthosiphon pisum]
Length = 1249
Score = 288 bits (737), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 250/445 (56%), Gaps = 29/445 (6%)
Query: 395 PAFRHRFKTILKHPGQKT------TKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPK 448
PAF F+ +H Q+ +K Y + E + L+ + + +PML PP
Sbjct: 622 PAFYTVFRGQCQHVKQEIKPHPVLSKLYQLSEPNDLIFD----------VTMIPMLSPPV 671
Query: 449 KWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
W N GGY+ + ++R + Q L+ + +AL+ L S W +NK V
Sbjct: 672 PWTSINSGGYIAAKADLIRLPQQAILQWHRLEQTPKQELYPALDALNQLASIPWNINKPV 731
Query: 508 LSVLESIWVSGGNIAGLVDRNDVLIPE-KPLSEDMTEVQKWKWSVRKA--KKINQERHSQ 564
L V+ ++ SGG+ + + P +P+ + M++ ++ + +A K+ E S
Sbjct: 732 LDVVLQVFRSGGSSKLDIPKPVSAFPSPQPILQSMSKDERSRLYKERAILKRQKAEMFSL 791
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
CD +LS+A + F+ PHN+DFRGR YP PHLNHL SD+ R +L FA+G PLG
Sbjct: 792 WCDALYRLSLANHFCGK-TFWLPHNMDFRGRVYPCPPHLNHLGSDMARSLLCFAKGEPLG 850
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+GL WLKIH NL +G ++ S RL + E L +I +SA NP+ G+ WW +E+P+Q
Sbjct: 851 SNGLNWLKIHCVNL-TGLKKRNSVKERLQYAEEILPDILNSAHNPLGGNMWWAESENPWQ 909
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
LA CI +S AL+ +P + ISH P+HQDGSCNGLQHYAALG++ A +VNL + P
Sbjct: 910 TLACCIEISHALQLENPENFISHFPVHQDGSCNGLQHYAALGKDFAGAVSVNLTPSDIPQ 969
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYS +A V +D+ D ++AK L V RK++KQTVMT+VYGVT GAR
Sbjct: 970 DVYSCVAAMVERERSKDAAND------VVIAKYLDGFVRRKVIKQTVMTTVYGVTRFGAR 1023
Query: 805 EQIKRRLEEKGHITDDRQLFAAACY 829
QI ++L++ D+ +++A+ Y
Sbjct: 1024 LQIAKQLKDIDSFPKDK-VWSASTY 1047
>gi|89148152|gb|ABD62818.1| mitochondrial single-subunit RNA polymerase [Liceales sp. orange
ball]
Length = 392
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/279 (50%), Positives = 188/279 (67%), Gaps = 10/279 (3%)
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
RK +++N + HS CD KL VA +M D FY PHN+DFRGRAYP+ PHLN L SD+C
Sbjct: 4 RKVRQLNNDLHSLWCDATYKLDVAAKMMDHT-FYLPHNVDFRGRAYPLPPHLNQLGSDLC 62
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
RG+L +PLG GL WLK+HLANL+ GV+K+ + R+AFV+ ++ + D+ +NP+
Sbjct: 63 RGLLLLDTAKPLGPRGLWWLKVHLANLY--GVDKVPFEARVAFVDKNIDNVMDAGDNPLG 120
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
G WWL A+DP+QCLA C L+ A++S P + S +P+HQDGSCNGLQHYAALG + +
Sbjct: 121 GRMWWLKADDPWQCLATCTELTAAIRSGDPENFKSRIPVHQDGSCNGLQHYAALGGDEIG 180
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
A VNL+ + P DVY+ +A V KR + + H L K+L +VDRK+VKQTV
Sbjct: 181 ARKVNLIPSDSPQDVYAGVATLV---AKRIHDDAEAGHE---LGKLLDGKVDRKVVKQTV 234
Query: 792 MTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACY 829
MTSVYGVT++GAR QI L++K DD QL+ A+ Y
Sbjct: 235 MTSVYGVTYIGARLQIHNALQDKEIDWRDDDQLYHASAY 273
>gi|345489940|ref|XP_001599095.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Nasonia vitripennis]
Length = 622
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 199/590 (33%), Positives = 303/590 (51%), Gaps = 43/590 (7%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
K+ P++ +L D I+M ++ L M G E + H+G +Q +++
Sbjct: 58 KRASIMLYPYLSILKPDDYICIIMREVRKLGM-GSEMYSLPFNSLCRHMG---DQVYKMY 113
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK------LLKNEET 354
K N KI EV K L KR + L + M + + E
Sbjct: 114 EAKTKQTNGINDKIF----EVHMKYCHWLIKRNDKLNNRLKWMTLESEGNKYGVTLGAEV 169
Query: 355 KPWGRDTQAKLGSRLVELLI-----ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
W + A +G L +++ + Y++ A + PAF FK I +H G
Sbjct: 170 PVWQANIHASIGRFLFNIIVNDLKLDANYIKK--KKAYHGRGHYIPAF---FK-IFRHSG 223
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V+ P+V + S L VP L PP+ W + GGY+ + ++
Sbjct: 224 VMLKEE---VKPHPIVSKLYRDSQPENLTFDTTLVPSLCPPRPWVSVHSGGYIVTKTDIV 280
Query: 467 R-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R TH +Q + L + + ++L+ LGS W VN VL V ++ + G++ V
Sbjct: 281 RVTHMGNQQWDRLINAQPKQLYPALDSLNQLGSIPWAVNTSVLDVAIKVFQNDGSVKLNV 340
Query: 526 DRNDVL---IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
+ + I P+ D E +K + + K+ E +S CD +LS+A ++E
Sbjct: 341 PQPPSVLAHILSVPIDADPKEKKKINKAKIELKRKKNEMYSLWCDALYRLSLANHFRNEI 400
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
F+ PHN+DFRGR YP+ PHLNHL SD+ R +L FA +PLG GL WLK+H NL +G
Sbjct: 401 -FWLPHNMDFRGRVYPIPPHLNHLGSDLARSMLVFALKKPLGPKGLDWLKLHTINL-TGF 458
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPH 702
++ S RL + + + I DSAENP+ G WW T+++P+Q LAAC+ +++ALKSS+P
Sbjct: 459 KKRESISERLKYADKIIENILDSAENPLTGKMWWATSDEPWQTLAACMEIAKALKSSNPT 518
Query: 703 SVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS 762
++ PIHQDGSCNGLQHYAALGR+ + A +VNL P DVYS +A V E + D+
Sbjct: 519 HYMTGFPIHQDGSCNGLQHYAALGRDQIGAQSVNLFPSHFPQDVYSSVATMVDERRREDA 578
Query: 763 NKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ L+A +L + RK++KQT+MT+VYGVT+ GA+ QI R+L+
Sbjct: 579 SNG------NLIANVLEGFIKRKVIKQTIMTTVYGVTWFGAKLQIARQLK 622
>gi|307191463|gb|EFN75004.1| DNA-directed RNA polymerase, mitochondrial [Camponotus floridanus]
Length = 1223
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 252/477 (52%), Gaps = 38/477 (7%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W R+ +G L ++++ + H P D S + PAF F+ K T +
Sbjct: 570 WPRNVLLNVGEFLYKIILNDVKISHVPKP-DTSERQI-PAFYALFR--------KQTNNF 619
Query: 417 GVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
E P L L + + + + +P PP+ W + GGYLF + +R
Sbjct: 620 LTEEIKPHPYLHRLYKDSHPETLTFETVLLPTCSPPRPWIDIDTGGYLFSKTSFIR-DPY 678
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV- 530
L++ + F+ L+ LGS WR+N +L +L I+ GG+ ++ DV
Sbjct: 679 MTPTILLRNTPMKQLYPAFDCLNQLGSIPWRINVPMLDILIKIFREGGS-----EKLDVP 733
Query: 531 -------LIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
+ E S D+ + +K K + + +K N E ++ CD+ KLSVA +D+
Sbjct: 734 QSPSSLPSLSELITSSDIDKSKKMKLAFQLRRKKN-EMYALWCDSLYKLSVANHFRDK-V 791
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV 643
F+ PHNLDFRGRAYP+ PHL HL+SD+ R +L FA+G+PLG GL WLKIH NL +G
Sbjct: 792 FWLPHNLDFRGRAYPVPPHLTHLASDLSRSILLFAQGKPLGPKGLDWLKIHTINL-TGMK 850
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+K S D RL F L I DSA NP+ G WW +++P+Q LAAC + AL+S
Sbjct: 851 KKESIDQRLKFANEILDLIVDSARNPLTGEMWWTKSDEPWQTLAACKEIDNALQSPDVEK 910
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
I LPIHQDGSCNGLQHYAALGR+ + A +VNL P DVYS +A V E K D+
Sbjct: 911 YICRLPIHQDGSCNGLQHYAALGRDQIGAESVNLYPSNTPQDVYSVVANMVDEYRKIDAE 970
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
+AK L V RK++KQTVMT+VYGVT G R QI R+L + D
Sbjct: 971 AGDK------VAKALEGFVTRKVIKQTVMTTVYGVTKFGGRLQIARQLSDLKEFNQD 1021
>gi|320170252|gb|EFW47151.1| T7 bacteriophage-type single subunit RNA polymerase [Capsaspora
owczarzaki ATCC 30864]
Length = 948
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 202/607 (33%), Positives = 297/607 (48%), Gaps = 41/607 (6%)
Query: 240 TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRI 299
T YAP +E+L K+A I + + V+ R V AA HIG + +
Sbjct: 170 TNSPNPVYAPLLEVLSRRKLASIAISTLTREVVGSAGCRHVL---AASHIGRQVHMAYSL 226
Query: 300 HSFLEKTKNYKRKKIIADTEEVLSKEKE--LLRKRVNSLIKSKRVMEAQKL-LKNEETKP 356
+ R + A + ++K K+ + K V + K ++ + +K
Sbjct: 227 KRLGAGGNEFAR--LAASFPKFMAKFKKSAMPGKVVPDHVVWKTFIQHHLIGVKAVSVPD 284
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W DT +G L+ LI A ++ P D P H K + P + + +
Sbjct: 285 WSEDTFVAIGGALLSHLIAAAEIR----PGMADVVDFVPHVEHNRKVTMLCPNEHLVQFF 340
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLP----SYVMRTHGSR 472
V D R+ +PM+VPP W +N GGYL L S +MRT
Sbjct: 341 KVHPRDV-------RNQTFQFAKMLPMVVPPIPWISHNHGGYLLLSATGRSTLMRT--IH 391
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI-AGLVDRNDVL 531
Q + ++ N + VF+AL+ + +T+WRVN +VL++ +IW GG+ + D D+
Sbjct: 392 NDQRRILKLSQNRLGGVFDALNAIQTTEWRVNSRVLAIQIAIWNQGGDPELDIPDVKDIP 451
Query: 532 IPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
P +P D T + ++ + ++ ++ N+ HS RC + +L +A +++ Y P N
Sbjct: 452 EPRQPTGADATHTVMAEYFATRQQIREENRNMHSMRCTVQYQLLIAYKLRHNR-LYMPVN 510
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LD+RGRAY + P+L HL D+ R L F + RPLG++GL WLK+HLANL G +K S
Sbjct: 511 LDWRGRAYTVSPNLTHLGGDMTRSTLMFHQRRPLGENGLFWLKVHLANLC--GADKCSLQ 568
Query: 650 GRLAFVENHLYEIFDSAENPI---NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
R+ FV+++ I DSA +P+ G WW E+P+Q LAAC L A
Sbjct: 569 DRVKFVDSNWKHIIDSARDPLKERGGLGWWRQQENPWQALAACFELDAATSLPDHRLYEC 628
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
LP+ DGSCNGLQHYAALG + L A VNL+ +P DVY +A V E + D
Sbjct: 629 GLPVQMDGSCNGLQHYAALGGDVLGALQVNLLPSPQPMDVYQAVATIVSE--RIDQLAAE 686
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
H L + V RK+VKQTVMTSVYGVT VGA QI R+L H+ D+ Q
Sbjct: 687 GNHNAIRLKGL----VKRKIVKQTVMTSVYGVTVVGANAQIARQLAALPHL-DESQAHQL 741
Query: 827 ACYAAKV 833
A + A +
Sbjct: 742 ATFLAPI 748
>gi|324503368|gb|ADY41467.1| DNA-directed RNA polymerase [Ascaris suum]
Length = 827
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 188/504 (37%), Positives = 282/504 (55%), Gaps = 41/504 (8%)
Query: 364 KLGSRLVELLIETAYVQHPVNPADY--SPPDVRP-AFRHRFKTILKHPGQKTTKRYGVVE 420
+LGS L+ + +E+ P+ P D+ S D R AF R I + + + +
Sbjct: 144 QLGSFLLNVAMESC--TFPLPPKDHPSSMKDRRAQAFSIRNVVIEEENLMMEEDKMNLCK 201
Query: 421 CDPLVLEGLDRSAKH----MLIPY--VPMLVPPKKWKGYNKGGYLFL-PSYVMRTHGSRK 473
L LD +H +L P +PM +PP+ W Y GG L+ PS V R
Sbjct: 202 MVALNARMLDLFDEHQFEWLLFPSDNLPMKIPPRPWIDYGDGGPLYTKPSDVFRNLPDYP 261
Query: 474 Q----QEALKSVTGNCMKK-VFEALDTLGSTKWRVNKQVLSVLESIW-----VSGGNIA- 522
+ E + + G + VF+AL+ LG+T WR+N +L +L ++ +S G++
Sbjct: 262 RMIISDEVRRRIRGRSQARPVFDALNDLGATPWRINSAMLDILIEVFKMTPDLSKGDMLH 321
Query: 523 --GLVDRNDVL-IPE------KPLSEDMTEVQKWK-WSVRK--AKKINQERHSQRCDTEL 570
+ R+D + IP+ + + D KW+ +S K A K E +S
Sbjct: 322 RLAIPLRSDTIKIPDFVATFGEKVRVDEIPSDKWREYSKNKYEAVKKRNELNSLWYWLMY 381
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
+L +A +++ ++ HN+DFRGR YP+ P+L+H+ D+ R +L FAEG+ LG G RW
Sbjct: 382 RLVMAEHFRNDV-LFFAHNMDFRGRVYPISPYLSHMGDDISRSLLRFAEGKQLGDDGFRW 440
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LK+H NL +G +++ S + RLAF + L +I DSA NP+NG +WW+ +++P+Q LAACI
Sbjct: 441 LKLHCINL-TGHLKRESIENRLAFFDKILPKILDSANNPLNGDQWWMRSDEPWQTLAACI 499
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ +AL+S P + +SHLPIHQDGSCNGLQHYAALGR+ + VNL+ + PADVYS +
Sbjct: 500 EIRDALRSGDPSTFVSHLPIHQDGSCNGLQHYAALGRDRQGGSEVNLLPSKLPADVYSSV 559
Query: 751 AVRVHEI-MKRDSNKDPSKHPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
A RV + ++ + + DP A+ L L V RK++KQTVMT+VYGVT GA +QIK
Sbjct: 560 AKRVEDKRLEDEKSGDPDVKELAIALRAALPSPVPRKVIKQTVMTTVYGVTMYGATQQIK 619
Query: 809 RRLEEKGHITDDRQLFAAACYAAK 832
R+L K + QL A Y A+
Sbjct: 620 RQL--KALEIESDQLGKFASYLAQ 641
>gi|393906843|gb|EFO18076.2| DNA-dependent RNA polymerase [Loa loa]
Length = 1117
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 180/503 (35%), Positives = 273/503 (54%), Gaps = 41/503 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+G + +LGS L+ +++E + V P F H K ++
Sbjct: 433 FGSGIREQLGSFLMSVVLEACKLH--VEAGSRGNSICIPVFSH--KDVVNEESSLDGDVL 488
Query: 417 GVVECDPLVLEGLDRSAKH----MLIPY--VPMLVPPKKWKGYNKGG-YLFLPSYVMRTH 469
V + + ++ +KH M+ P +PM VPP+ W +GG Y P V+R H
Sbjct: 489 CVTKMIKICNAMMEVVSKHQFEWMVFPTDSLPMEVPPRPWLDSGEGGPYYGSPFNVLRAH 548
Query: 470 G-------SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
+ + ++ LKS + VF+AL+ LG T W++N VL V ++ A
Sbjct: 549 PDYSTINVNYEMKKRLKSRKQ--ARPVFDALNDLGVTPWKINGPVLDVALRVFEMAQLEA 606
Query: 523 GLVDRNDVLIPEKP--------------LSEDMTEVQKWKWSVR---KAKKINQERHSQR 565
+ IP P + D V +W+ + +A K E +S
Sbjct: 607 DEKFLEKLSIPIHPSRVSIPDYVAKFGNMEVDKLPVNEWREYSKAKYEAMKKRNELNSLW 666
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C +L++A K E ++PH++DFRGR YP+ P+LNH+ D+ R +L FAEGRPLG
Sbjct: 667 CWLLYRLTMANHFK-ESVLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGD 725
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLK+H NL +G ++K S+ R + + L ++ +SA +P++G WW +E+P+Q
Sbjct: 726 DGLRWLKLHCINL-TGILKKESNFTRAIYADEMLPKMLESANSPLSGEMWWTKSEEPWQT 784
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
L+AC+ + AL++ P + ISHLP++QDGSCNGLQHYAALGR+ VNLV EKP+D
Sbjct: 785 LSACMEIRNALQTGDPVTFISHLPVYQDGSCNGLQHYAALGRDQEGGMEVNLVPAEKPSD 844
Query: 746 VYSEIAVRVHEI-MKRDSNKDPSKHPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
VYS +AVRV + ++ + + D H AL L I+ D V RK++KQTVMT+VYGVT GA
Sbjct: 845 VYSSVAVRVEQKRLEDEKSPDSEAHDLALSLRTIMPDPVSRKVIKQTVMTTVYGVTMNGA 904
Query: 804 REQIKRRLEEKGHITDDRQLFAA 826
R QI+R+L+ G +++R +A
Sbjct: 905 RRQIERQLKAIGIDSNERMKYAT 927
>gi|312088786|ref|XP_003145994.1| DNA-dependent RNA polymerase [Loa loa]
Length = 1131
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 182/503 (36%), Positives = 274/503 (54%), Gaps = 41/503 (8%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+G + +LGS L+ +++E + V P F H K ++
Sbjct: 447 FGSGIREQLGSFLMSVVLEACKLH--VEAGSRGNSICIPVFSH--KDVVNEESSLDGDVL 502
Query: 417 GVVECDPLVLEGLDRSAKH----MLIPY--VPMLVPPKKWKGYNKGG-YLFLPSYVMRTH 469
V + + ++ +KH M+ P +PM VPP+ W +GG Y P V+R H
Sbjct: 503 CVTKMIKICNAMMEVVSKHQFEWMVFPTDSLPMEVPPRPWLDSGEGGPYYGSPFNVLRAH 562
Query: 470 G-------SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
+ + ++ LKS + VF+AL+ LG T W++N VL V ++ A
Sbjct: 563 PDYSTINVNYEMKKRLKSRKQ--ARPVFDALNDLGVTPWKINGPVLDVALRVFEMAQLEA 620
Query: 523 GLVDRNDVLIPEKP--------------LSEDMTEVQKWK-WSVRK--AKKINQERHSQR 565
+ IP P + D V +W+ +S K A K E +S
Sbjct: 621 DEKFLEKLSIPIHPSRVSIPDYVAKFGNMEVDKLPVNEWREYSKAKYEAMKKRNELNSLW 680
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
C +L++A K E ++PH++DFRGR YP+ P+LNH+ D+ R +L FAEGRPLG
Sbjct: 681 CWLLYRLTMANHFK-ESVLFFPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGD 739
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
GLRWLK+H NL +G ++K S+ R + + L ++ +SA +P++G WW +E+P+Q
Sbjct: 740 DGLRWLKLHCINL-TGILKKESNFTRAIYADEMLPKMLESANSPLSGEMWWTKSEEPWQT 798
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
L+AC+ + AL++ P + ISHLP++QDGSCNGLQHYAALGR+ VNLV EKP+D
Sbjct: 799 LSACMEIRNALQTGDPVTFISHLPVYQDGSCNGLQHYAALGRDQEGGMEVNLVPAEKPSD 858
Query: 746 VYSEIAVRVHEI-MKRDSNKDPSKHPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
VYS +AVRV + ++ + + D H AL L I+ D V RK++KQTVMT+VYGVT GA
Sbjct: 859 VYSSVAVRVEQKRLEDEKSPDSEAHDLALSLRTIMPDPVSRKVIKQTVMTTVYGVTMNGA 918
Query: 804 REQIKRRLEEKGHITDDRQLFAA 826
R QI+R+L+ G +++R +A
Sbjct: 919 RRQIERQLKAIGIDSNERMKYAT 941
>gi|224120774|ref|XP_002330948.1| predicted protein [Populus trichocarpa]
gi|222873142|gb|EEF10273.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/289 (47%), Positives = 193/289 (66%), Gaps = 30/289 (10%)
Query: 173 RKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE 232
RK +LRRRQVK E EAWE EYKEL M E +LAPNLP++K LFLGWF P ++AI
Sbjct: 130 RKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIA 189
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
+EQ++ RT K + YAP+ +LLPADK++VI MH++ +VM G E C +VV AA IG A
Sbjct: 190 KEQELIRTGKSRQGYAPYFDLLPADKMSVIAMHQLAAMVMTGGEHGCARVVTAACMIGDA 249
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN- 351
IEQE E+E LRK+V LIK +++ +K++K
Sbjct: 250 IEQE----------------------------EQENLRKKVTDLIKKQKLPAVRKIVKGK 281
Query: 352 EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
+++KPW D +AK+GSRL+ELL++TAY+Q P + SP + RPAF H F+T+ + +K
Sbjct: 282 DDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTV-SYENKK 340
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
K+YGV++CDPLVL+GL+++A+HM+IPY+PMLVPP +W+GY Y++
Sbjct: 341 GAKKYGVIQCDPLVLKGLEKTARHMVIPYMPMLVPPLRWRGYVNLFYIY 389
>gi|198414501|ref|XP_002124660.1| PREDICTED: similar to RNA polymerase [Ciona intestinalis]
Length = 1114
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 188/596 (31%), Positives = 305/596 (51%), Gaps = 49/596 (8%)
Query: 231 IEREQKMQRTKKQK-AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
+ E K R +K + + P + +LP + I++ MM + +G+ A +
Sbjct: 337 VSEEDKWTRYRKHRFSGVYPFLCVLPPETFVDIIIQFMMSMSASGN---------IASVL 387
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
+ + H + + K+ + + S + R N L + ++ + +
Sbjct: 388 CYELGSSVYSHHLINQLKH---DGYFENLRMIYSDYTSMYTHRCN-LSPRQSWLQLEDKI 443
Query: 350 KNEETK----PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR--PAFRHRFKT 403
N T+ PW +G +L+E+++ T N S +R PA + +K
Sbjct: 444 GNISTRHRIEPWHNMWLFTVGLKLLEVMVSTL----TFNLDWGSGVKLRNIPAVFNSYKV 499
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPPKKWKGYNKGGYLF 460
K YG+ P + L AKH +PM+VPP W ++GGYL
Sbjct: 500 W-------GGKMYGMAVPHPGYVAMLS-DAKHDFEFETGILPMVVPPLPWVNPSQGGYLA 551
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
P+ +R++ QE ++ + + V ++L+ LGS W++N++VL V ++ + G+
Sbjct: 552 SPTKFVRSYRDVIGQEE-DTIDQSDVTTVMDSLNILGSVGWKINQRVLDVQLCLFRNNGD 610
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKW-----SVRKAKKINQERHSQRCDTELKLSVA 575
+ P+ P ++ ++ K + R A K+ E +S D KLS+A
Sbjct: 611 KKLSIPPPATSAPKPPDLSNVADLPPNKRGEMFEAARAATKLKLEMNSLHADGLYKLSIA 670
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+D+ ++PHNLDFRGR YP+ HLN++ SDV R + FA+G+PLG GL WLKIHL
Sbjct: 671 DYYRDDI-VWFPHNLDFRGRTYPVSRHLNYMGSDVSRSLFLFADGKPLGGDGLNWLKIHL 729
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G +K RL + + EI DSA+ P++G WW +++P+Q LAAC L++A
Sbjct: 730 VNL-TGEKKKEGMAARLDYANEMMDEILDSADRPLDGRCWWKESDEPWQTLAACFVLADA 788
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
L++ +P + +LP++QDGSCNGLQHYAALGR+TL A VNL P D+Y+ +A +V
Sbjct: 789 LRTRNPEDYVCNLPVYQDGSCNGLQHYAALGRDTLGAQQVNLAPSSVPQDIYAGVAAKVE 848
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
I D+++ +AK+L V R++VKQTVMT+VYGVT G Q++R+L
Sbjct: 849 NIRSLDADRGSE------VAKVLEGFVTRQVVKQTVMTTVYGVTRYGGVLQVQRQL 898
>gi|195051970|ref|XP_001993208.1| GH13202 [Drosophila grimshawi]
gi|193900267|gb|EDV99133.1| GH13202 [Drosophila grimshawi]
Length = 1379
Score = 279 bits (713), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 200/632 (31%), Positives = 321/632 (50%), Gaps = 58/632 (9%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKKQ-----KAAYAPHIELLPADKVAVIVMHKMMGL 270
+K L GW +S AI R+ R + + Y ++++L + A I++ ++ L
Sbjct: 549 LKELEQGWRKQISAAIVRDLNTLRAQVRFKPHGYMNYYTYLKVLDTTQFADILIKELYKL 608
Query: 271 VMAGHEDRCVQVVQAAVHIGMAIEQEIRI-----HSFLEKTKN-YKRKKIIADTEEVLSK 324
G E V Q +G ++Q +I + LEK + Y + D+
Sbjct: 609 A-EGSETFSPTVSQLYKELGQKVQQCYQIEQKKHNGILEKIGDIYSAYCELWDSGRTTDN 667
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPV- 383
+++ ++ V+ S M+ ++ PW + A +G L +L+ + +
Sbjct: 668 TRQMWQRLVHDERHSGPSMDLPEV-------PWPTNVLAGVGRFLYNILMRDIKIDAHIM 720
Query: 384 --------NPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
A + ++ PAF T+ ++ G+ + V+ P VL L R+++
Sbjct: 721 RQKSKAKTTSATMASHNLLPAF----YTLFRNQGRLVKEE---VKPHP-VLSRLLRASRQ 772
Query: 436 MLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVF 490
+ + VPML PP+ W + GGYL S ++R H + +Q E ++S +
Sbjct: 773 QTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERIRSSNPQHLYPAI 832
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL-------SEDMTE 543
++L+ L S WRVN Q+L V+ ++ +GGN V + +P P SE ++
Sbjct: 833 DSLNQLASVPWRVNTQLLDVIIKVFRNGGNAKLDVPQPPSSLPPLPTLPSSDKDSETVSP 892
Query: 544 VQKWKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
++ K K ++ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P
Sbjct: 893 AERAKQFRDKLGHRRKQAEMYSLWCDALYRLSLAQHYRDK-VFWLPHNMDFRGRVYPVPP 951
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
HLNHL SD+ R +L F + +PLG G WLK+H NL +G ++ S RL + E + +
Sbjct: 952 HLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGMKKRDSVRERLLYAEEIMPD 1010
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DSA+NP+ G WW +++P+Q L C+ +++ +S P + +S PIHQDGSCNGLQH
Sbjct: 1011 ILDSADNPLTGRMWWAKSDEPWQTLGCCMEIAKVQRSPDPAAYLSRFPIHQDGSCNGLQH 1070
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ A +VNL P DVYS +A V K D+ +A+ L
Sbjct: 1071 YAALGRDQAGACSVNLSPSAIPQDVYSAVATMVERTRKTDAQSGLH------VAQALEGF 1124
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1125 VRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1156
>gi|358334198|dbj|GAA52636.1| DNA-directed RNA polymerase mitochondrial [Clonorchis sinensis]
Length = 1130
Score = 278 bits (712), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 167/413 (40%), Positives = 233/413 (56%), Gaps = 34/413 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMR----THGSRKQQEALKSVTGNCMKK---VFEAL 493
+PML PP W + GYL +Y R T S + AL K+ V +AL
Sbjct: 500 LPMLCPPVPWTDLHDAGYLVSRNYATRLMRQTRASPVAEPALDDDLDFDAKRIPSVLDAL 559
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-------KPLSEDMT---- 542
+ L S WRVN+ +L+ L + +GGN + IPE PLS T
Sbjct: 560 NCLASCPWRVNEPILNALIKVARAGGN-------RKLSIPEIVRQTMPSPLSITNTMSYE 612
Query: 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
E + R+A+K E S +LS+A + + F++PH++DFRGR YP PH
Sbjct: 613 ERRAADRQAREAQKQYDEMRSLWATELYRLSIANQYRGRV-FWFPHSMDFRGRVYPCPPH 671
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
+H+ SDV RG++ FA+G PLG+ GL WLKIHL NL +G ++ S+ RL F E L ++
Sbjct: 672 FHHMGSDVSRGLIVFAKGLPLGEHGLDWLKIHLVNL-TGLKKRCSNRDRLKFAEQLLDDV 730
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQH 721
DSA NP NG RWW E+P+Q LA C L A++ S PH+ +SH P+HQDGSCNGLQH
Sbjct: 731 LDSARNPFNGRRWWQEQEEPWQVLACCKELMAAMEHPSGPHNYVSHFPVHQDGSCNGLQH 790
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ A +VNL A ++P DVYS++A E+++ D + +AK+L
Sbjct: 791 YAALGRDCRGAESVNLTARDQPQDVYSDVA----EVVEAQRQADAAA--GIPVAKVLEGF 844
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
V RK++KQ+VMT+VYGVT GA EQI+R+L + + A Y A+++
Sbjct: 845 VRRKVIKQSVMTTVYGVTLYGASEQIRRQLRDLEDFPGREWIGPAGTYLARLT 897
>gi|157124670|ref|XP_001654145.1| hypothetical protein AaeL_AAEL001847 [Aedes aegypti]
gi|108882774|gb|EAT46999.1| AAEL001847-PA [Aedes aegypti]
Length = 1271
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 245/438 (55%), Gaps = 38/438 (8%)
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPP 447
P + PAF F+ K ++ ++ P++++ +S + L I VPM+ PP
Sbjct: 634 PKLVPAFYSLFRYEAKIAKEQ-------IKPHPVLIKLYRKSQQENLKFDINLVPMVCPP 686
Query: 448 KKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
+ W GGY+ S ++R + +Q E + M +AL+ L S W+VN++
Sbjct: 687 QPWSTPVNGGYILAKSDLIRLPQQAHQQSERINEANPQDMYPTLDALNQLASIPWKVNEE 746
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS----------EDMTEVQKWKWSVRKA-- 554
VL ++ ++ +GGN + +PE P S +MT ++ +K
Sbjct: 747 VLDIVLEVFNNGGNAK-------LDVPEPPSSLPSIVETIPRNEMTGFDRFNMVRKKMTH 799
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
++ + +S CD +LS+A +D+ F+ P N+DFRGR YP+ PHLNHL D+ R +
Sbjct: 800 RRKQGDMYSLWCDALYRLSLANHFRDK-VFWLPQNIDFRGRVYPIPPHLNHLGHDLARCL 858
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
+ F + +PLG G WLK+H NL +G ++ S + RL + + + +I DSA+ P+ G
Sbjct: 859 MVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDSVEDRLKYADEIMDDILDSADRPLTGRM 917
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
WW ++++P+Q LA CI +++ +S +P +S PIHQDGSCNGLQHYAALGR+T A +
Sbjct: 918 WWSSSDEPWQTLACCIEIAKVHRSPNPAKFMSGFPIHQDGSCNGLQHYAALGRDTAGAVS 977
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
VNL P DVYS +A V + +D+ D +AKIL + RK++KQTVMT+
Sbjct: 978 VNLAPSPVPQDVYSAVAALVEDSRTKDAEND------VKVAKILEGFIKRKVIKQTVMTT 1031
Query: 795 VYGVTFVGAREQIKRRLE 812
VYGVT GAR+QI R+LE
Sbjct: 1032 VYGVTRYGARKQIARQLE 1049
>gi|157111313|ref|XP_001651483.1| DNA-dependent RNA polymerase, putative [Aedes aegypti]
gi|108868341|gb|EAT32566.1| AAEL015297-PA [Aedes aegypti]
Length = 767
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 164/462 (35%), Positives = 251/462 (54%), Gaps = 40/462 (8%)
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPP 447
P + PAF F+ K ++ ++ P++++ +S + L I VPM+ PP
Sbjct: 185 PKLVPAFYSLFRYEAKIAKEQ-------IKPHPVLIKLYRKSQQENLKFDINLVPMVCPP 237
Query: 448 KKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQ 506
+ W GGY+ S ++R + +Q E + M +AL+ L S W+VN++
Sbjct: 238 QPWSTPVNGGYILAKSDLIRLPQQAHQQSERINEANPQDMYPTLDALNQLASIPWKVNEE 297
Query: 507 VLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS----------EDMTEVQKWKWSVRKA-- 554
VL ++ ++ +GGN + +PE P S +MT ++ VRK
Sbjct: 298 VLDIVLEVFNNGGNAK-------LDVPEPPSSLPSIVETIPRNEMTGFDRFN-MVRKKMT 349
Query: 555 -KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
++ + +S CD +LS+A +D+ F+ P N+DFRGR YP+ PHLNHL D+ R
Sbjct: 350 HRRKQGDMYSLWCDALYRLSLANHFRDKV-FWLPQNIDFRGRVYPIPPHLNHLGHDLARC 408
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
++ F + +PLG G WLK+H NL +G ++ S + RL + + + +I DSA+ P+ G
Sbjct: 409 LMVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDSVEDRLKYADEIMDDILDSADRPLTGR 467
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW ++++P+Q LA CI +++ +S P +S PIHQDGSCNGLQHYAALGR+T A
Sbjct: 468 MWWSSSDEPWQTLACCIEIAKVHRSPDPAKFMSGFPIHQDGSCNGLQHYAALGRDTAGAV 527
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
+VNL P DVYS +A V + +D+ D +AKIL + RK++KQTVMT
Sbjct: 528 SVNLAPSPVPQDVYSAVAALVEDSRTKDAEND------VKVAKILEGFIKRKVIKQTVMT 581
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVSN 835
+VYGVT GAR+QI R+LE D A++ K N
Sbjct: 582 TVYGVTRYGARKQIARQLEYIDEFPKDWVWPASSYLTVKTFN 623
>gi|350395973|ref|XP_003484395.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Bombus
impatiens]
Length = 1000
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 162/437 (37%), Positives = 249/437 (56%), Gaps = 34/437 (7%)
Query: 388 YSPPDVRPAFRHRFKTILKH--PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
YS P FR++ + + P +K Y V L + L +P
Sbjct: 371 YSIPAFYTLFRNKGNYLSEQIKPHPLVSKLYRKVHLKTLTFKSL----------LLPSYS 420
Query: 446 PPKKWKGYNKGGYLFLPSYVMRTHGS-RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
PP W + GGYL + +R + ++ + +F++L+ L S W++N
Sbjct: 421 PPSPWVSIHLGGYLITKTDFIRISSDFDRLWHKFENTEPEQLFPIFDSLNQLSSIPWKIN 480
Query: 505 KQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH- 562
+L ++ I+ GG++ V ++ VLIP P++++ T +K K ++ A+ NQE++
Sbjct: 481 TAILDIVIKIFQDGGSVELNVPQSVSVLIPPGPINKNATVEEKQKAAIAIAQ-YNQEKYD 539
Query: 563 --SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
S CDT KLS+A +D+ F+ PHNLDFRGR YP+ P+LNHLSSD+ R +L F +G
Sbjct: 540 MYSLWCDTLYKLSIANHFRDK-IFWLPHNLDFRGRVYPVPPYLNHLSSDLGRSLLLFGKG 598
Query: 621 RPLGKSGLRWLKIHLANLF----SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
+PLG +GL WLK+H+ NL +G V++ RL + ++ I DSA P+ G WW
Sbjct: 599 KPLGPNGLDWLKLHVINLTNFKKAGSVKE-----RLEYANQNMDNILDSATKPLTGKMWW 653
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+E P+Q LA C+ ++ ALK+ + +S P+HQDGSCNGLQHYAALG++ + A +VN
Sbjct: 654 KQSEAPWQTLAGCMEIANALKTPNVEEYVSSFPVHQDGSCNGLQHYAALGKDKIGAESVN 713
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
L + P DVYSE+ V + E ++ K+ K +A+IL V RK++KQTVMT+VY
Sbjct: 714 LHPFDTPKDVYSEV-VSIIETQRQIDAKNNVK-----IAQILEGYVKRKVIKQTVMTTVY 767
Query: 797 GVTFVGAREQIKRRLEE 813
GVT GA+ QI ++L++
Sbjct: 768 GVTKYGAKHQIAKQLKD 784
>gi|321470970|gb|EFX81944.1| hypothetical protein DAPPUDRAFT_49577 [Daphnia pulex]
Length = 975
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 241/390 (61%), Gaps = 19/390 (4%)
Query: 450 WKGYNKGGYLFLPSYVMR--THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQV 507
W + GGYL ++R H S KQ+ L + + +AL+ LGS WR+N +
Sbjct: 406 WSSHKCGGYLVTDVSLVRLPAHAS-KQRLRLANTPPQQLYPALDALNALGSIPWRINGSI 464
Query: 508 LSVLESIWVSGGNIAGLVDR--NDVLIPEKPLSEDMTEVQKWK-WSVRKA-KKINQERHS 563
L ++ I+ + G+ + + + + IP P++ + K K + R A K+ E +S
Sbjct: 465 LDLVTQIFNANGSKELHIPQPPSALAIP-SPVAAEADGSHKVKAYRDRIAFKRQKAEMYS 523
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFR-GRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
CD+ +LS+A +D+ F+ PHN+DFR GR YP PHL HLS D+ R +L FA+G+P
Sbjct: 524 LWCDSLYRLSLANHFRDKV-FWLPHNMDFRLGRVYPCSPHLTHLSHDMARSLLFFAQGKP 582
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LG G WLK+H+ NL +G ++ R A+ E + EI DSA+NP+ G +WW+ +++P
Sbjct: 583 LGADGFNWLKLHVINL-TGTKKREPISERYAYAEKIMPEILDSADNPLTGRQWWVNSDEP 641
Query: 683 FQCLAACINLSEALKS-SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
+Q LAAC+ ++ AL+ P + + HLPIHQDGSCNGLQHYAALGR+T+ A +VNL +
Sbjct: 642 WQTLAACMEVANALRCPDGPEAYVCHLPIHQDGSCNGLQHYAALGRDTVGAESVNLTPAD 701
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
+P DVYS +A +++R+ +KD + + + +A++L ++RK++KQTVMT+VYGVT
Sbjct: 702 RPQDVYSNVA----NLVERERSKDAANNVE--IAQLLAGLINRKIIKQTVMTTVYGVTRY 755
Query: 802 GAREQIKRRLEEKGHITDDRQLFAAACYAA 831
GAR QI ++L+E +T + Q+ + Y A
Sbjct: 756 GARLQIAKQLKELPSLTTE-QVQVGSVYLA 784
>gi|170582929|ref|XP_001896353.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
gi|158596464|gb|EDP34803.1| DNA-dependent RNA polymerase family protein [Brugia malayi]
Length = 1129
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 179/507 (35%), Positives = 277/507 (54%), Gaps = 49/507 (9%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+G + +LGS L +++E Q + D P F +K ++ +
Sbjct: 445 FGSGIREQLGSFLTSVVLEAC--QAHIKAGDLGKTISIPVFS--YKDVVNEESSFDGEVL 500
Query: 417 GVVECDPLVLEGLDRSAKH----MLIP--YVPMLVPPKKWKGYNKGGYLFLPSY-VMRTH 469
V + + ++ +KH M+ P +PM VPP+ W +GG + S+ V+R H
Sbjct: 501 CVTKMVKICNAMMEVVSKHQFEWMVFPTDLLPMEVPPRPWLDSGEGGPYYGSSFNVLRPH 560
Query: 470 G-------SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV-LESIWVSGGNI 521
+ + ++ LKS + VF+AL+ LG T W++N+ VL V L+ ++ N
Sbjct: 561 PDYSMINVNYEMKKRLKSRKQ--ARPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNT 618
Query: 522 AG--------------------LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
+V ++ + E P++ D E K K+ +A K E
Sbjct: 619 DEKFLEKLSIPIHPSRVPIPDYVVKFGNMEVDELPIN-DWREYSKAKY---EAMKKRNEL 674
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
+S C +L++A K F+ PH++DFRGR YP+ P+LNH+ D+ R +L FAEGR
Sbjct: 675 NSLWCWLLYRLTMANHFKGSVLFF-PHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGR 733
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
PLG GLRWLK+H NL +G ++K S+ R+A+ + L +I +SA P++G WW +E+
Sbjct: 734 PLGDDGLRWLKLHCINL-TGILKKESNFSRVAYADEMLPKILESANEPLSGEMWWTKSEE 792
Query: 682 PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGE 741
P+Q L+ACI + AL++ +P + +SHLP++QDGSCNGLQHYAALGR+ VNLV E
Sbjct: 793 PWQTLSACIEIRNALQTGNPTTFVSHLPVYQDGSCNGLQHYAALGRDQEGGKEVNLVPAE 852
Query: 742 KPADVYSEIAVRVHEIMKRDSNKDPSK-HPQAL-LAKILIDQVDRKLVKQTVMTSVYGVT 799
KP+DVYS +A RV + D S+ H AL L ++ + RK++KQTVMT+VYGVT
Sbjct: 853 KPSDVYSSVAARVEQKRLEDEQSPESEVHDLALSLRTVMPGPISRKVIKQTVMTTVYGVT 912
Query: 800 FVGAREQIKRRLEEKGHITDDRQLFAA 826
GAR QI+R+L+ +++R +A
Sbjct: 913 MNGARRQIERQLKAMEIDSNERMKYAT 939
>gi|195437825|ref|XP_002066840.1| GK24692 [Drosophila willistoni]
gi|194162925|gb|EDW77826.1| GK24692 [Drosophila willistoni]
Length = 1353
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 197/628 (31%), Positives = 317/628 (50%), Gaps = 44/628 (7%)
Query: 216 IKGLFLGWFGPLSEAIEREQKMQRTKKQ-----KAAYAPHIELLPADKVAVIVMHKMMGL 270
+K L W +S AI R+ R + + Y ++++L IV+ ++ L
Sbjct: 532 LKELEQNWRKQISVAIVRDMNTLRAQVRFKPHGYMNYYTYLKVLDTSHYTDIVIKELYKL 591
Query: 271 VMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR 330
G E V Q +G +++ +I E+ K+ + I D + R
Sbjct: 592 A-EGSETFSPTVGQLYKELGQKVQRRYQI----EQKKHNGTLEKIGDIYSSYCDIWDSGR 646
Query: 331 KRVNSLIKSKRVMEAQKLLKNEETK----PWGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
+ N+ +R++ Q+ + PW + +G L +L+ + +
Sbjct: 647 TQDNTRQIWQRLVHDQREIGGPSMDLPEIPWPSNVLTGVGRFLYNILMRDIKIDSHIMRQ 706
Query: 387 D--YSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY---- 440
+ S ++ PAF T+ ++ G+ + V+ P VL L R+++ + +
Sbjct: 707 NNRQSTQNLMPAFY----TLFRNQGRLVKEE---VKPHP-VLSRLLRASRQQTLTFDSNL 758
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
VPML PP+ W + GGYL S ++R H + +Q E + + + ++L+ L S
Sbjct: 759 VPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERINATNPEQIYPALDSLNQLASV 818
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-----DMTEVQKWKWSVRKA 554
WRVN Q+L V+ ++ +GG+ V + +P P ++ D++ + K K
Sbjct: 819 PWRVNTQLLDVIIEVFQNGGDAKLDVPQPPSALPPLPANQAIDTKDISNADRAKQFRDKL 878
Query: 555 --KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
++ E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R
Sbjct: 879 GHRRKQAEMYSLWCDALYRLSLAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLAR 937
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+L F + +PLG G WLK+H NL +G ++ S RL + E + EI DSA+NP+ G
Sbjct: 938 SILIFDQAQPLGLDGFSWLKLHCINL-TGMKKRDSVRERLLYAEEIMPEILDSADNPLTG 996
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+ WW +++P+Q LA C+ +++ +S P + +S PIHQDGSCNGLQHYAALGR+ A
Sbjct: 997 NMWWSKSDEPWQTLACCMEIAKVQRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDQAGA 1056
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
+VNL P DVYS +A V K D+ +A+ L V RK++KQTVM
Sbjct: 1057 CSVNLAPSPLPQDVYSAVAALVERTRKSDAVNGLH------VAQALEGFVRRKVIKQTVM 1110
Query: 793 TSVYGVTFVGAREQIKRRLEEKGHITDD 820
T+VYGVT GAR QI R+L++ D
Sbjct: 1111 TTVYGVTRYGARLQIARQLKDIDEFPKD 1138
>gi|170029524|ref|XP_001842642.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
gi|167863226|gb|EDS26609.1| DNA-directed RNA polymerase, mitochondrial [Culex quinquefasciatus]
Length = 1308
Score = 272 bits (695), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/388 (38%), Positives = 223/388 (57%), Gaps = 28/388 (7%)
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTL 496
I VPML PP+ W GGY+ S ++R + +Q E + + M +AL+ L
Sbjct: 713 INLVPMLCPPQPWSTAVNGGYILAKSDLIRLPQQAHQQSERIAEASPQDMYPTLDALNQL 772
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS----------EDMTEVQK 546
GS W++N +VL V+ +++ GGN + + +PE P S +MT +
Sbjct: 773 GSIPWKINDEVLDVVLAVFNKGGN-------SKLDVPEPPASLAPIEETIPRNEMTGYDR 825
Query: 547 WKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
+ +K ++ + +S CD +LS+A + + F+ P N+DFRGR YP+ PHLN
Sbjct: 826 FNLMRKKMTHRRKQGDMYSLWCDALYRLSLANHFRGKV-FWLPQNIDFRGRVYPIPPHLN 884
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
HL D+ R ++ F + +PLG G WLK+H NL +G ++ S RL + + + +I D
Sbjct: 885 HLGHDLARCLMVFHQKKPLGPDGFNWLKLHCINL-TGLKKRDSVQDRLRYADEIMDDILD 943
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAA 724
SA+ P+ G WW +++P+Q LA C+ +++ + +P +S PIHQDGSCNGLQHYAA
Sbjct: 944 SADRPLTGRMWWSHSDEPWQTLACCMEIAKVHRCPNPAKFMSGFPIHQDGSCNGLQHYAA 1003
Query: 725 LGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDR 784
LGR+T A +VNL + P DVYS +AV V E +D+ + +A IL + R
Sbjct: 1004 LGRDTPGAISVNLAPADVPQDVYSAVAVLVEENRAKDAANN------VKVAAILEGFIKR 1057
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLE 812
K++KQTVMT+VYGVT GAR+QI R+LE
Sbjct: 1058 KVIKQTVMTTVYGVTRYGARKQIARQLE 1085
>gi|294948962|ref|XP_002785982.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239900090|gb|EER17778.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1162
Score = 271 bits (694), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 172/455 (37%), Positives = 256/455 (56%), Gaps = 29/455 (6%)
Query: 396 AFRHRF-KTILKHPGQKTTKRYGVVECDPLVLEG---------LDRSAKHMLIPYV-PML 444
AFRHR + K G+ ++ V D L+ G L+ S H+L + P++
Sbjct: 525 AFRHRLVRRQSKIQGELCLRK---VAADALLRTGNGSSSSSSRLEGSPAHLLATKLQPLV 581
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
P W+G+ +GGYL + +R GSR ++ V + +V LD LGST +++N
Sbjct: 582 CKPNPWQGFWEGGYLTHRTPFIRFTGSRITSRDIRHVD---LTRVQRILDYLGSTPFKIN 638
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS-EDMTE--VQKWKWSVRKAKKINQER 561
++VL V+E +W I + R D+ IP P E +TE ++ K +V KA K N++
Sbjct: 639 EKVLDVVEEVWRQDLRIGDIPPRADLDIPNLPGEKEGLTEKAMKSAKLAVMKAYKDNEKL 698
Query: 562 HSQRCDTELKLSVARRMKD-EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
S R LKL AR ++ G Y+PHNLDFRGR YP+ PHL H D+CRG+L F E
Sbjct: 699 ASVRPTFLLKLKSARAFRNVSTGLYFPHNLDFRGRCYPLPPHLQHQGDDLCRGLLMFNEK 758
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+ LG+ G WL++HLANLF G +KL R+ + + I SA +P+ + +WL A+
Sbjct: 759 KRLGERGWWWLRLHLANLF--GHDKLKLQDRVDWTDRQTESILVSAADPLGNAEFWLEAD 816
Query: 681 DPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
DP+Q LA ++EAL+ P + + +HQDGSCNGLQHYAALGR+ A AVN++
Sbjct: 817 DPWQALAVIFEVAEALRHPGGPEEYSTGISVHQDGSCNGLQHYAALGRDEWGATAVNILP 876
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
+ DVY + V ++R +++ + QA+ +L RK+VKQTVMT YGVT
Sbjct: 877 NAEVQDVYMIVLDIVKGKVERHADQGHALARQAIELGVL----KRKVVKQTVMTICYGVT 932
Query: 800 FVGAREQIKRRLEE-KGHITDDRQLFAAACYAAKV 833
+GAR+Q+K++LE+ G D +L A Y +++
Sbjct: 933 SLGARDQVKKQLEDLVGDTLDSEELMQMAKYLSQL 967
>gi|383863127|ref|XP_003707034.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Megachile rotundata]
Length = 1152
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 164/464 (35%), Positives = 248/464 (53%), Gaps = 29/464 (6%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
W D +G L +++ + HP PAF F+ + ++
Sbjct: 496 WSLDVLINIGKFLYNIILNDI-ILHPNMLKGQDLKCSIPAFYTLFRNRENYLSEQ----- 549
Query: 417 GVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSR 472
++ PLV L R +K ++ + +P PP+ W GGYL MR S
Sbjct: 550 --IKPHPLV-SKLYRDSKTRILTFDSHILPSHAPPRPWTSIYSGGYLMTKIDFMRL-PSD 605
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
L++ G + +F++L+ L S W VN +L + I+ +GG+ V R ++
Sbjct: 606 SPWHKLQNTPGKQLFPIFDSLNQLSSIPWMVNTDILDIAIKIFQNGGSEKLNVPRPISVL 665
Query: 533 PEKPLSEDMTEVQKWKWSVRKAKKINQERH---SQRCDTELKLSVARRMKDEEGFYYPHN 589
P ++ +Q+ + +V + Q+R+ S CD +LS+A ++++ F+ PHN
Sbjct: 666 SLPPSVKENATIQEKRSAVLALAQYKQKRYDMYSLWCDALYRLSIANHLRNK-VFWLPHN 724
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL--FSGGVEKLS 647
LDFRGR YP+ PHLNHLSSD+ R L FA G+PLG GL WLK+H+ NL F G S
Sbjct: 725 LDFRGRVYPVPPHLNHLSSDLGRSFLLFANGKPLGPDGLNWLKLHVINLTNFKKGS---S 781
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
RL + ++ I DSA P+ G WW AE+P+Q LA C+ ++ ALK+ + +S
Sbjct: 782 VQERLEYANQNMENILDSATKPLTGKMWWAEAEEPWQTLAGCMEIANALKTPNVEEYVSR 841
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
P+HQDGSCNGLQHYAALGR+ + A +VNL + P DVY+ +A + + + D+ D
Sbjct: 842 FPVHQDGSCNGLQHYAALGRDQIGAESVNLYPFDVPNDVYTAVATIIEKQRQIDAKND-- 899
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+A++L V RK++KQTVMT+VYGVT GA+ QI ++L
Sbjct: 900 ----VKIAQLLEGFVKRKVIKQTVMTTVYGVTKYGAKHQIAKQL 939
>gi|195388547|ref|XP_002052941.1| GJ17831 [Drosophila virilis]
gi|194149398|gb|EDW65096.1| GJ17831 [Drosophila virilis]
Length = 1374
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 259/480 (53%), Gaps = 38/480 (7%)
Query: 356 PWGRDTQAKLGSRLVELLIETAYVQHPV--------NPADYSPPDVRPAFRHRFKTILKH 407
PW + A +G L +L+ + + A +P ++ PAF T+ ++
Sbjct: 689 PWPTNVLAGVGRFLYNILMRDIKIDAHIMRQKSKTKTTATTTPQNLLPAF----YTLFRN 744
Query: 408 PGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPS 463
G+ + V+ P VL L R+++ + + VPML PP+ W GGYL S
Sbjct: 745 QGRLVKEE---VKPHP-VLSRLLRASRQQTLTFDSNLVPMLCPPQPWSTPQNGGYLLNKS 800
Query: 464 YVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
++R H + +Q E +++ + ++L+ L S WRVN Q+L V+ ++ GG+
Sbjct: 801 ELIRLPHQAVQQWERIRAANPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQKGGDAK 860
Query: 523 GLVDRNDVLIPEKPL----SEDMTEVQKWKWSVRKAKKINQER-----HSQRCDTELKLS 573
V + +P P +D + V + + K+ R +S CD +LS
Sbjct: 861 LDVPQPPSSLPPLPTLPTGEKDGSSVSPAERAKLFRDKLGHRRRQAEMYSLWCDALYRLS 920
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+
Sbjct: 921 LAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKL 979
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
H NL +G ++ S RL + E + EI DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 980 HCINL-TGTKKRDSVRERLLYAEEIMPEILDSADNPLTGRMWWAKSDEPWQTLACCMEIA 1038
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+ +S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A
Sbjct: 1039 KVQRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGACSVNLAPSAIPQDVYSAVAAL 1098
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1099 VERSRKTDAQNGLH------VAQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1152
>gi|195118034|ref|XP_002003545.1| GI21974 [Drosophila mojavensis]
gi|193914120|gb|EDW12987.1| GI21974 [Drosophila mojavensis]
Length = 1366
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 261/480 (54%), Gaps = 38/480 (7%)
Query: 356 PWGRDTQAKLGSRLVELL-----IETAYVQHPVNPADYS----PPDVRPAFRHRFKTILK 406
PW + + +G L +L I+ ++ N + + P ++ PAF T+ +
Sbjct: 681 PWPNNVLSGVGRFLYNILMRDIKIDAHIMRQRSNKSKATGTTMPQNMLPAFY----TLFR 736
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLP 462
+ G+ + V+ P VL L R+++ + + VPML PP+ W + GGYL
Sbjct: 737 NQGRLVKEE---VKPHP-VLSRLLRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNK 792
Query: 463 SYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
S ++R H + +Q E + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 793 SELIRLPHQAVQQWERIHASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDA 852
Query: 522 ---AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER-----HSQRCDTELKLS 573
+ +P P+ ED + V + + K+ R +S CD +LS
Sbjct: 853 KLDVPQPPSSLPPLPTLPVGEDGSGVSPADRAKQFRDKLGHRRKQAEMYSLWCDALYRLS 912
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+
Sbjct: 913 LAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKL 971
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
H NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 972 HCINL-TGIKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIA 1030
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A
Sbjct: 1031 NVYRSPDPAAYMSRFPIHQDGSCNGLQHYAALGRDQAGACSVNLAPSPIPQDVYSSVAAL 1090
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1091 VERTRKTDAENGLH------VAQALEGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1144
>gi|194759172|ref|XP_001961823.1| GF14737 [Drosophila ananassae]
gi|190615520|gb|EDV31044.1| GF14737 [Drosophila ananassae]
Length = 1362
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 198/639 (30%), Positives = 315/639 (49%), Gaps = 75/639 (11%)
Query: 223 WFGPLSEAIEREQKMQRTKKQ-----KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED 277
W +S AI R+ R + + Y +++ + I++ ++ L AG E
Sbjct: 543 WRKQISAAIVRDLNTLRVQVRFKPHGYMNYYTYLKTMDTSHFVDILIKELYKLA-AGSET 601
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI---------IADTEEVLSKEKEL 328
V Q +G ++Q +I +K +N +KI I D+ + ++
Sbjct: 602 FSPTVGQLYKELGQKVQQRYQIE---QKKQNGTLEKIGEIYSSYCDIWDSGKTQDNTRQA 658
Query: 329 LRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPAD 387
++ V+ S M+ ++ PW + +G L +L+ + H +
Sbjct: 659 WQRLVHEQRTSGPSMDQPEV-------PWPSNVLTGVGRFLYNILMRDIKIDSHLMRTKS 711
Query: 388 YS-----PPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPY-- 440
S P ++ PAF T+ ++ G+ + V+ P VL L R+++ + +
Sbjct: 712 KSKTASQPQNLLPAFY----TLFRNQGRLVKEE---VKPHP-VLARLLRASRQQTLTFDS 763
Query: 441 --VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLG 497
VPML PP+ W + GGYL S ++R H + +Q E +++ + ++L+ L
Sbjct: 764 NLVPMLCPPQPWSTPHNGGYLLNKSELIRLPHQAVQQWERIRASNPQQLYPALDSLNQLA 823
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK----WSVRK 553
S WRVN Q+L V+ ++ +GG+ + +P+ P S K +V
Sbjct: 824 SVPWRVNTQLLDVIIKVFQNGGDAK-------LDVPQPPSSLPPLSSLPPKNAEGSNVSN 876
Query: 554 AKKINQ------------ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
A + Q E +S CD +LS+A+ +D+ F+ PHN+DFRGR YP+ P
Sbjct: 877 ADRAKQFRDKLVHRRRQAEMYSLWCDALYRLSLAQHFRDKV-FWLPHNMDFRGRVYPVPP 935
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
HLNHL SD+ R +L F + +PLG G WLK+H NL +G ++ S RL + E + +
Sbjct: 936 HLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHCINL-TGLKKRDSVRERLLYAEEIMPD 994
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DSA+NP+ G WW +++P+Q LA C+ ++ +S P + +S PIHQDGSCNGLQH
Sbjct: 995 ILDSADNPLTGRMWWAKSDEPWQTLACCMEIANVHRSPDPAAYLSRFPIHQDGSCNGLQH 1054
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ A +VNL P DVYS +A V + K D+ +A+ L
Sbjct: 1055 YAALGRDQAGACSVNLAPSAIPQDVYSAVAALVEKSRKADAQNGLH------VAEALAGF 1108
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
V RK++KQTVMT+VYGVT GAR QI R+L++ D
Sbjct: 1109 VRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDEFPKD 1147
>gi|20129143|ref|NP_608565.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|442625108|ref|NP_001259853.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
gi|7296127|gb|AAF51421.1| mitochondrial RNA polymerase, isoform A [Drosophila melanogaster]
gi|40882523|gb|AAR96173.1| LD36213p [Drosophila melanogaster]
gi|440213109|gb|AGB92390.1| mitochondrial RNA polymerase, isoform B [Drosophila melanogaster]
Length = 1369
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 171/482 (35%), Positives = 260/482 (53%), Gaps = 44/482 (9%)
Query: 356 PWGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
PW + +G L +L+ + Q + A P ++ PAF T+ ++ G
Sbjct: 686 PWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFY----TLFRNQG 741
Query: 410 QKTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSY 464
R+ E P VL L R+++ + + VPML PP+ W + GGYL +
Sbjct: 742 -----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKTE 796
Query: 465 VMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
++R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG++
Sbjct: 797 LIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDVKL 856
Query: 524 LVDRNDVLIPEKPL------------SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
V + +P P SED + + K R+ + E +S CD +
Sbjct: 857 DVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQA---EMYSLWCDALYR 913
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
LS+A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG GL WL
Sbjct: 914 LSLAQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSWL 972
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
K+H NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+
Sbjct: 973 KLHCINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCME 1031
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
++ + P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A
Sbjct: 1032 IANVHRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVA 1091
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
V + K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L
Sbjct: 1092 ALVEKSRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQL 1145
Query: 812 EE 813
++
Sbjct: 1146 KD 1147
>gi|195575683|ref|XP_002077706.1| GD22928 [Drosophila simulans]
gi|194189715|gb|EDX03291.1| GD22928 [Drosophila simulans]
Length = 1369
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 194/598 (32%), Positives = 300/598 (50%), Gaps = 60/598 (10%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y +++ L A A I++ ++ L G E V Q +G ++Q +I +K
Sbjct: 579 YYTYLKTLDASHFADILIKELYKLA-EGSETFSPTVGQLYKELGQKVQQRYQIE---QKK 634
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK----------P 356
N +KI E+ S EL +S + +A + L +E+ + P
Sbjct: 635 HNGTLEKI----GEIYSSYCELW----DSGMSQDNTRQAWQRLVHEQRESGPSMDLPEVP 686
Query: 357 WGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + +G L +L+ + Q + A P ++ PAF T+ ++ G
Sbjct: 687 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFY----TLFRNQG- 741
Query: 411 KTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYV 465
R+ E P VL L R+++ + + VPML PP+ W + GGYL S +
Sbjct: 742 ----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 797
Query: 466 MRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 798 IRLPHQAIQQWDRIMASNPQQLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAKLD 857
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSVA 575
V + +P P S +AK+ E +S CD +LS+A
Sbjct: 858 VPQPPSSLPPLPTLPAKDAEGNATSSADRAKQFRDKLGHRRKQAEMYSLWCDALYRLSLA 917
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 918 QHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 976
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 977 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANV 1035
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+ P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1036 HRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVE 1095
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1096 KSRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1147
>gi|195470409|ref|XP_002087499.1| GE15788 [Drosophila yakuba]
gi|194173600|gb|EDW87211.1| GE15788 [Drosophila yakuba]
Length = 1366
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 194/598 (32%), Positives = 300/598 (50%), Gaps = 60/598 (10%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y +++ L A A I++ ++ L G E V Q +G ++Q +I +K
Sbjct: 576 YYTYLKTLDASHFADILIKELYKLA-EGSETFSPTVGQLYKELGQKVQQRYQIE---QKK 631
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK----------P 356
N +K+ E+ S EL +S + +A + L +E+ + P
Sbjct: 632 HNGTLEKV----GEIYSSYCELW----DSGMSQDNSRQAWQRLVHEQRESGPSMDLPEVP 683
Query: 357 WGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + +G L +L+ + Q A P ++ PAF T+ ++ G
Sbjct: 684 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKAKAATQPQNLLPAFY----TLFRNQG- 738
Query: 411 KTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYV 465
R+ E P VL L R+++ + + VPML PP+ W + GGYL S +
Sbjct: 739 ----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 794
Query: 466 MRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 795 IRLPHQAIQQWDRITASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIGVFQNGGDAKLD 854
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSVA 575
V + +P P+ S +AK+ E +S CD +LS+A
Sbjct: 855 VPQPPSSLPPLPMLPAKDAEGNATSSADRAKEFRDKLGHRRKQAEMYSLWCDALYRLSLA 914
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 915 QHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 973
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 974 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIANV 1032
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1033 HRSPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVE 1092
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ K D+ +A L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1093 KSRKTDAQNGLH------VADALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1144
>gi|340730181|ref|XP_003403364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Bombus terrestris]
Length = 1248
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/467 (34%), Positives = 258/467 (55%), Gaps = 29/467 (6%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPV---NPADYSPPDVRPAFRHRFKTILKH--PGQK 411
W +D +G + +++ ++ + YS P FR++ + + P
Sbjct: 594 WPQDVIINIGKFMYHIILNDIMLKPEMLKGQDLKYSIPAFYTLFRNKGTYLSEQIKPHPL 653
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMR-THG 470
+K Y + + L E L +P PP W GGYL + +R +
Sbjct: 654 VSKLYREIHLETLTFESL----------LLPSCSPPSPWVSIYLGGYLITNTDFIRISSD 703
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-D 529
++ + +F++L+ L S W++N +L ++ I+ GG++ V ++
Sbjct: 704 CSVLWHKFENTKPEQLFPIFDSLNQLSSIPWKINTAILDIVIKIFQDGGSVELNVPQSVS 763
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH---SQRCDTELKLSVARRMKDEEGFYY 586
L P P++++ T +K K ++ A+ NQ+++ S CDT KLS+A +++ F+
Sbjct: 764 ALTPPNPINKNATVEEKQKAAIAIAQ-YNQKKYDMYSLWCDTLYKLSIANHFRNK-IFWL 821
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHNLDFRGR YP+ P+LNHLSSD+ R +L F +G+PLG +GL WLK+H+ NL + +
Sbjct: 822 PHNLDFRGRVYPVPPYLNHLSSDLGRSLLLFGKGKPLGPNGLDWLKLHIINL-TNFKKAD 880
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S RL + ++ I DSA P+ G WW +E+P+Q LA C+ ++ ALK+ + IS
Sbjct: 881 SVKERLEYANQNMDNILDSATKPLTGKMWWKQSEEPWQTLAGCMEIANALKAPNVEEYIS 940
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
P+HQDGSCNGLQHYAALG++ + A +VNL + P DVYSE+ V + E ++ K+
Sbjct: 941 TFPVHQDGSCNGLQHYAALGKDKIGAESVNLHPFDTPKDVYSEV-VSIIETQRQIDAKNN 999
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
K +A+IL V RK++KQTVMT+VYGVT GA+ QI ++L++
Sbjct: 1000 VK-----IAQILEGYVKRKVIKQTVMTTVYGVTKYGAKIQIIKQLKD 1041
>gi|444509517|gb|ELV09312.1| DNA-directed RNA polymerase, mitochondrial [Tupaia chinensis]
Length = 1350
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/265 (49%), Positives = 183/265 (69%), Gaps = 8/265 (3%)
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
+S R +++ +E HS R D +LS+A+ ++ + F+ PHN+DFRGR YP PHLNHL S
Sbjct: 896 YSFRSYRQVAREMHSLRADALYRLSLAQHLR-QRVFWLPHNMDFRGRTYPCPPHLNHLGS 954
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
D+ R +LEFAEGRPLG GL WLKIHL NL +G ++ S RLAF + +I DSA+
Sbjct: 955 DLARALLEFAEGRPLGPQGLDWLKIHLINL-TGLKKRESLQARLAFANEVMDDILDSADR 1013
Query: 669 PINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
P+ G +WW+ A++P+Q LA C+ ++ A++S P + +SHLP+HQDGSCNGLQHYAALGR+
Sbjct: 1014 PMTGRKWWMEADEPWQTLACCMEVARAMRSPDPTAYVSHLPVHQDGSCNGLQHYAALGRD 1073
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
++ AA+VNL+ + P DVYS +A +V ++D+ + +A+ L V RK+VK
Sbjct: 1074 SVGAASVNLLPSDLPQDVYSGVAAQVELFRQQDAAQG------VRVAQELEGFVRRKVVK 1127
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEE 813
QTVMT VYGVT G R QI++RL E
Sbjct: 1128 QTVMTVVYGVTRYGGRLQIEKRLRE 1152
>gi|195350263|ref|XP_002041660.1| GM16628 [Drosophila sechellia]
gi|194123433|gb|EDW45476.1| GM16628 [Drosophila sechellia]
Length = 1364
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 194/598 (32%), Positives = 300/598 (50%), Gaps = 60/598 (10%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKT 306
Y +++ L A A I++ ++ L G E V Q +G ++Q +I +K
Sbjct: 574 YYTYLKTLDASHFADILIKELYKLA-EGSETFSPTVGQLYKELGQKVQQRYQIE---QKK 629
Query: 307 KNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK----------P 356
N +KI E+ S EL +S + +A + L +E+ + P
Sbjct: 630 HNGTLEKI----GEIYSSYCELW----DSGMSQDNTRQAWQRLVHEQRESGPSMDLPEVP 681
Query: 357 WGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + +G L +L+ + Q + A P ++ PAF T+ ++ G
Sbjct: 682 WPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFY----TLFRNQG- 736
Query: 411 KTTKRYGVVECDPL-VLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYV 465
R+ E P VL L R+++ + + VPML PP+ W + GGYL S +
Sbjct: 737 ----RFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSEL 792
Query: 466 MRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
+R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 793 IRLPHQAIQQWDRIMASNPQHLYPGLDSLNQLASVPWRVNTQLLDVIIKVFQNGGDAKLD 852
Query: 525 VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSVA 575
V + +P P S +AK+ E +S CD +LS+A
Sbjct: 853 VPQPPSSLPPLPTLPAKDAEGNATSSADRAKQFRDKLGHRRKQAEMYSLWCDALYRLSLA 912
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 913 QHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLHC 971
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 972 INL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANV 1030
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+ P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1031 HRCPDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVE 1090
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1091 KSRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1142
>gi|332850851|ref|XP_003316023.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan
troglodytes]
Length = 1273
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 183/540 (33%), Positives = 275/540 (50%), Gaps = 52/540 (9%)
Query: 293 IEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNE 352
+ Q R+ ++ +N+ RK + + E L R+ +L + + E
Sbjct: 624 VVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE-------- 675
Query: 353 ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-K 411
+PW Q +LG L E+L++ + ++ +P R +L H +
Sbjct: 676 --QPWPLPVQMELGKLLAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFR 724
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
++ G+++ P ++ L+++A+ L VPML PP W + G +L P+ +MRT
Sbjct: 725 NVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRT 784
Query: 469 -HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR 527
G+ + QE L++ + +AL LG+ WRVN +VL ++ ++ + G V
Sbjct: 785 VEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPA 844
Query: 528 NDVLIPEKP---LSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
P+ P L +K + V +K+ +E HS R + +LS+A+ ++D
Sbjct: 845 PPSEAPQPPEAHLPHSAAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV 904
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGG 642
F+ PHN+DFRGR YP PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G
Sbjct: 905 -FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGL 962
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS---S 699
++ RLAF E + I DSA+ P+ A P C L A
Sbjct: 963 KKREPLRKRLAFAEEVMDHILDSADQPLT------RAGAPVHLAGGCTALGTARPGGWFG 1016
Query: 700 SPH-----SVISHL-PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
PH IS L P+ QDGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +
Sbjct: 1017 VPHVSASLGSISRLPPLPQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQ 1076
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 1077 VEVFRRQDAQRG------MRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1130
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 101/163 (61%), Gaps = 22/163 (13%)
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+ WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR+++ A
Sbjct: 428 THWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGA 487
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMK-------RDSNKDPSKHPQAL------------ 773
A+VNL + P DVYS +A +V + S + P A+
Sbjct: 488 ASVNLEPSDVPQDVYSGVAAQVECALLPGGISAWGQSGLTRAPRPPAVQVEVFRRQDAQR 547
Query: 774 ---LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 548 GMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 590
>gi|198475283|ref|XP_001356998.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
gi|198138752|gb|EAL34064.2| GA18324 [Drosophila pseudoobscura pseudoobscura]
Length = 1363
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 257/479 (53%), Gaps = 40/479 (8%)
Query: 356 PWGRDTQAKLGSRLVELL-----IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
PW + A +G L +L I+ ++ S ++ PAF T+ ++ G+
Sbjct: 682 PWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKSKSKTTSSQNLLPAFY----TLFRNQGR 737
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V+ P VL L R ++ + + VPML PP+ W + GGYL S ++
Sbjct: 738 LVKEE---VKPHP-VLSRLLRGSRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 793
Query: 467 RT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
R H + +Q E +++ + ++L+ L S WRVN Q+L V+ ++ +GG+ V
Sbjct: 794 RLPHQAIQQWERIRASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQNGGDAKLDV 853
Query: 526 DRNDVLIPEKPL-----------SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
+ +P P + D+ + + K R+ K E +S CD +LS+
Sbjct: 854 PQPPTSLPPLPTILKNSEGSGVSNADLAKQFREKLGHRRKKA---EMYSLWCDALYRLSL 910
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 911 AQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLH 969
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
NL +G ++ S RL + E + EI DSA+NP+ G WW ++ P+Q L C+ ++
Sbjct: 970 CINL-TGLKKRDSVRERLLYAEEIMPEILDSADNPLTGGMWWAKSDAPWQTLGCCMEIAN 1028
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
+S P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1029 VHRSPDPAAYMSRFPIHQDGSCNGLQHYAALGRDKAGAYSVNLAPSPIPQDVYSAVATLV 1088
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1089 ERGRKADAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1141
>gi|425885852|gb|ADK56281.1| putative T7-like RNA polymerase [Heterocapsa triquetra]
Length = 1106
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 215/689 (31%), Positives = 329/689 (47%), Gaps = 98/689 (14%)
Query: 179 RRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE------ 232
RRRQ+ E E + ++ E +A++I++ A + +++ W L E IE
Sbjct: 259 RRRQLVIERETLTMALRDFLEDQARLIQEGNAAAAHGSRKVWMDWVRALVEQIEALRDDD 318
Query: 233 --REQKMQRTKKQKAAYAPHIELLPADK--VAVIVMHKMMGLVMAGH-----EDRCVQVV 283
E K + + + A A + LP D +AVI H ++ ++ H E V
Sbjct: 319 ADNEVKARVLQGKGAKAAKLMRDLPLDAQLLAVITCHTVLNQMLVPHYRNENEPGMAPFV 378
Query: 284 QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
V +G A+E E I ++E+ ++ K +R +N L +
Sbjct: 379 SLVVAVGDAVENEC-----------------IYRSQELPTQAKREIRVLINQLQR----- 416
Query: 344 EAQKLLKNEETKPWGRDTQA-KLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
+N + W + +Q +G+ LV++L+E VQ + P D S + AF H
Sbjct: 417 ------RNSLGRLWDKASQTVPIGAALVDMLLEVGQVQDGLAP-DGS--GMAKAFTHELV 467
Query: 403 TILKHPGQKTTKRYGVVEC-----DPLVLEGLDRSAKHMLIP-YVPMLVPPKKWKGYN-- 454
KH K G V+ LV+ L+P + PM+VPP W+
Sbjct: 468 WEGKH------KLCGYVKLTDRARQALVIGTDAEGLMRYLVPKHQPMVVPPVPWRPSGES 521
Query: 455 -KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+G YL +RT ++L + V +D++GST WRVNK +L ++E
Sbjct: 522 PQGCYLMRSVPFIRT-----PMQSLAQLRAYSPTTVARVMDSVGSTPWRVNKDILRLMEE 576
Query: 514 IWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK-WSVRK--AKKINQERHSQRCDTEL 570
+ +AG+ ++ +P P + Q K +R+ A K Q+ S R L
Sbjct: 577 VSQRDLAVAGVPPHHNPEVPVLPKDQGSLSEQALKDLKLRRDNAMKQCQQLASDRPTFFL 636
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KL A+ + E Y+PHN+DFRGRAYP+ PHLNH+ DVCRG+L+FA+ +PLGK GL W
Sbjct: 637 KLRSAQDFEHAERIYFPHNVDFRGRAYPVPPHLNHIGDDVCRGLLQFADPKPLGKDGLYW 696
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS--RWWLTAED-PFQCLA 687
LK+ + L G K++ D R+ +++ I AE+P+ ++W A+D P+Q LA
Sbjct: 697 LKVTICGLL--GKNKITFDARVEYIDGLKELIIAVAEDPLAEEHLKFWAEADDGPWQTLA 754
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L+ A KS P S +S PIH DG+CNGLQHYAALGR+ AVNL ++P DVY
Sbjct: 755 RCQELAAAWKSGDPESFMSAQPIHLDGTCNGLQHYAALGRDEAGGHAVNLTPSDRPQDVY 814
Query: 748 SEIAVRVHEIMKRDSNKDPSKHP-----------------------QALLAKILIDQVDR 784
+ + V E ++R++N K Q + I + + R
Sbjct: 815 TIVLGVVTEKVEREANPVAVKGGKPKGNAADAEAEEAVDAKLEETRQLAVQAIELGVLQR 874
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
K+VKQTVMT YGVT +GA QI+ +LE+
Sbjct: 875 KVVKQTVMTICYGVTKIGAIAQIQGQLED 903
>gi|194853889|ref|XP_001968243.1| GG24614 [Drosophila erecta]
gi|190660110|gb|EDV57302.1| GG24614 [Drosophila erecta]
Length = 1365
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 169/479 (35%), Positives = 253/479 (52%), Gaps = 38/479 (7%)
Query: 356 PWGRDTQAKLGSRLVELLIETAYV------QHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
PW +G L +L+ + Q A P ++ PAF T+ ++ G
Sbjct: 682 PWPSTVLIGVGRFLYNILMRDIKIDAHIMRQKSKAKAATQPQNMLPAFY----TLFRNQG 737
Query: 410 QKTTKRYGVVECDP-LVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSY 464
R+ E P VL L R+++ + + VPML PP+ W + GGYL S
Sbjct: 738 -----RFVKEEVKPHPVLSRLFRASRKQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSE 792
Query: 465 VMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
++R H + +Q + + + + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 793 LIRLPHQAIQQWDRIMTSNPQNLYPALDSLNQLASVPWRVNTQLLDVIVHVFQNGGDAKL 852
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ---------ERHSQRCDTELKLSV 574
V + +P P+ S +AK+ E +S CD +LS+
Sbjct: 853 DVPQPPSSLPPLPMLPAKDAEGNAASSAERAKEFRDKLGYRRKQAEMYSLWCDALYRLSL 912
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A+ +D+ F+ PHN+DFRGR YP+ PHLNHL SD+ R +L F + +PLG G WLK+H
Sbjct: 913 AQHYRDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGFSWLKLH 971
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
NL +G ++ S RL + E + +I DSA+NP+ G WW +++P+Q LA C+ ++
Sbjct: 972 CINL-TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWAKSDEPWQTLACCMEIAN 1030
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
+ P + +S PIHQDGSCNGLQHYAALGR+ A +VNL P DVYS +A V
Sbjct: 1031 VHRCPDPTAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALV 1090
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ K D+ +A+ L V RK++KQTVMT+VYGVT GAR QI R+L++
Sbjct: 1091 EKSRKTDAQNGLH------VAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD 1143
>gi|302423578|ref|XP_003009619.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261352765|gb|EEY15193.1| DNA-directed RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1299
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 175/243 (72%), Gaps = 9/243 (3%)
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
++L +AR +++ FY+PHN+DFRGRAYP+ +LNH+ +D RG+L FA+G+ LG+ GL+
Sbjct: 648 VRLEIARAFRNQT-FYFPHNIDFRGRAYPLPTYLNHMGADHVRGLLRFADGKELGEKGLK 706
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLK+HLAN++ G +K S R +F ++L IFDSA P+ G+RWWL AEDP+QCLAAC
Sbjct: 707 WLKVHLANVY--GFDKASLRERESFAMDNLVNIFDSASKPMEGNRWWLKAEDPWQCLAAC 764
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
L AL+S P +SHLP+HQDG+CNGLQHYAALG +T A VNL G+KPADVYS
Sbjct: 765 FELKAALESPEPTKFVSHLPVHQDGTCNGLQHYAALGGDTWGAKQVNLEPGDKPADVYSA 824
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A V + + +D + +P A+ ++ RK+VKQTVMT+VYGVTF GA++Q+ +
Sbjct: 825 VANIVKDYIAKDLE---TNNPFAIAVN---GKITRKVVKQTVMTNVYGVTFQGAKKQVLK 878
Query: 810 RLE 812
+L+
Sbjct: 879 QLD 881
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 110/242 (45%), Gaps = 31/242 (12%)
Query: 244 KAAYAPHIEL-LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302
+ Y P + L P+ AV ++ + + G D+ + + A + E++IR
Sbjct: 431 RCTYGPFLRLSTPSRLAAVTILGTLSSTAILG-VDKGMPLSAALSSLAKLAEEDIRAQMT 489
Query: 303 LE----KTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETK--- 355
++ KT KR++++ +V SK +L R + E + L K+ E +
Sbjct: 490 VKNSKTKTNKSKRRRVV----QVASKSSKLDAVRAELGAEG----EVKPLAKDTEPRADT 541
Query: 356 PWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
PW +AK+ + L+ LI+TA + +HP S +PAF H + +
Sbjct: 542 PWPVAVKAKVAAALLSALIDTAKIKVVKEHPETKTLIS--QYQPAFSHATQL-------R 592
Query: 412 TTKRYGVVECDPLVLEGLDRSAK-HMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
K+ G+V + ++ + R + L ++PM+V P+ W ++KGG+L S ++R
Sbjct: 593 RGKKIGMVLLNKELVNIMKREPQGDFLAKHLPMVVKPEPWSKFDKGGFLESTSNLVRLEI 652
Query: 471 SR 472
+R
Sbjct: 653 AR 654
>gi|431922184|gb|ELK19275.1| DNA-directed RNA polymerase, mitochondrial [Pteropus alecto]
Length = 800
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/254 (50%), Positives = 175/254 (68%), Gaps = 8/254 (3%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E HS R D +LS+A+ ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFAE
Sbjct: 341 EMHSLRTDALYRLSLAQHLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAE 399
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
GRPLG GL WLKIHL NL +G ++ S RLAF E + +I DSA+ P+ G +WW+ A
Sbjct: 400 GRPLGPHGLDWLKIHLVNL-TGLKKRESLQARLAFAEEVMPDILDSADRPMTGRKWWMEA 458
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
++P+Q LA C+ ++ A+++ P + ISH P+HQDGSCNGLQHYAALGR+++ AA+VNLV
Sbjct: 459 DEPWQALACCMEIARAVRAPDPAAHISHFPVHQDGSCNGLQHYAALGRDSVGAASVNLVP 518
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
+ P DVYS +A +V ++D+ + +A++L + RK+VKQTVMT VYGVT
Sbjct: 519 SDLPQDVYSGVATQVEVFRRQDAEQG------MRVAQVLEGFISRKVVKQTVMTVVYGVT 572
Query: 800 FVGAREQIKRRLEE 813
G R QI++RL E
Sbjct: 573 RYGGRLQIEKRLRE 586
>gi|410949947|ref|XP_003981678.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Felis catus]
Length = 875
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 184/283 (65%), Gaps = 10/283 (3%)
Query: 533 PEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
PE L D + QK + + + K+ +E HS R D +LS+A+ ++ F+ PHN+
Sbjct: 383 PEGRLPPDASPAQKAELRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FWLPHNM 441
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGR YP PH NHL SD+ R +LEFA+GRPLG GL WLK+HL NL +G ++
Sbjct: 442 DFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPRGLDWLKVHLVNL-TGLKKREPLQA 500
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
RL F + + +I DSA+ P+ G +WW+ E+P+Q LA C+ ++ A+++ P + ISH P+
Sbjct: 501 RLVFADEVMEDILDSADRPMTGRKWWMEVEEPWQALACCMEIARAVRAPDPAAYISHFPV 560
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
HQDGSCNGLQHYAALGR+++ AA+VNL+ + P DVYS +A +V +D+ +
Sbjct: 561 HQDGSCNGLQHYAALGRDSIGAASVNLLPSDVPQDVYSGVAAQVEVFRSQDAKRG----- 615
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+A++L + RK+VKQTVMT VYGVT G R QI+RRL E
Sbjct: 616 -VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRE 657
>gi|193203366|ref|NP_001122532.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
gi|148879471|emb|CAN99761.1| Protein Y105E8A.23, isoform b [Caenorhabditis elegans]
Length = 1156
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 238/412 (57%), Gaps = 29/412 (7%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVTGNCMKK-VFEAL 493
+PM+VPP+ W GG L+ S +M R +E +T + VF+AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIA--GLVD------RNDVL-IPE------KPLS 538
+ LGST W +N+ +L VL+ ++ GN GL++ R+D IP+ +
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIK 657
Query: 539 EDMTEVQKWKWSVRK---AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
++ +V+K++ +K A K+ E +S C + ++ +A + + ++PHN+DFRGR
Sbjct: 658 KEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQT-LFFPHNMDFRGR 716
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+L+H+ DV R +L+FA+ + LG+ G WLK+H NL +G +++ S R+
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEA 775
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDG 714
E + + DSA +P+NG +WW+++++P+Q LAAC+ + A + S ++ S LPIHQDG
Sbjct: 776 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDG 835
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL- 773
SCNGLQHYAALGR+ VNL + P DVYS++A RV + ++D + A
Sbjct: 836 SCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARK 895
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
L + L V RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA
Sbjct: 896 LREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFA 947
>gi|401412922|ref|XP_003885908.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
gi|325120328|emb|CBZ55882.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
Length = 2032
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 165/429 (38%), Positives = 233/429 (54%), Gaps = 54/429 (12%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDT----- 495
P PKK + KGG G R++ L M + F A +T
Sbjct: 1404 TPAETSPKKGEKRAKGG------------GKREKIAFLGGAGRVKMARDFHAYNTALPRA 1451
Query: 496 ----LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ------ 545
LG+ WR+NK VLSV+E+ W G I L R+ + E+ L
Sbjct: 1452 VVSALGAQAWRINKDVLSVMEAAWQRGLEIGRLPPRDSAALDEEILQLRKVATDPGAGAA 1511
Query: 546 ---------KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ + +++A K+ ER S LKL VA ++ + Y+PHN+DFRGR
Sbjct: 1512 SGASSAASIRLRHLLQQAGKLQSERPS----FLLKLQVASCFQNLDAVYFPHNIDFRGRC 1567
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ PHLNH+ D+CR +L FAE +PLG +GL WLK+H+ANLF GV K+S R A+V+
Sbjct: 1568 YPLPPHLNHMGDDICRSLLVFAEPKPLGPNGLGWLKVHIANLF--GVNKVSFADRQAWVD 1625
Query: 657 NHLYEIFDSAENPINGSRWWL---TAEDPFQCLAACINLSEALKSSSPHSV--ISHLPIH 711
L ++ A++P+N L A+DP+Q L+A + L + L + +S +S LPIH
Sbjct: 1626 ARLDQLLQVADDPLNPRSLHLLDQEADDPWQALSALLELKKVLAHGAENSAQFLSRLPIH 1685
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH-- 769
QDGSCNGLQHYAALGR+ AVNLV GEKP DVYS + V + + D+ + P
Sbjct: 1686 QDGSCNGLQHYAALGRDRRGGEAVNLVGGEKPRDVYSFVLEVVKQRVHADAARGPGPEGL 1745
Query: 770 --PQALLAKILI--DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK-GHITDDRQLF 824
P+ LA +L+ + + RK+VKQTVMT YGVT +GAR+Q+ R+LE+ G D+ L
Sbjct: 1746 APPEKRLAGLLMHHNLLQRKVVKQTVMTICYGVTAIGARDQVTRQLEDLIGETVDEATLK 1805
Query: 825 AAACYAAKV 833
+ Y ++V
Sbjct: 1806 SLGGYLSRV 1814
>gi|221485456|gb|EEE23737.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 2101
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 218/385 (56%), Gaps = 43/385 (11%)
Query: 486 MKKVFEALDT---------LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK- 535
M + F A DT LGS WR+NK VL V+E++W G + L R+ + E+
Sbjct: 1513 MARDFHAYDTALPRAVVSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGLEEEI 1572
Query: 536 ---------PLSEDMTEVQ-KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
P S + + + +++A K+ ER S LKL VAR + + Y
Sbjct: 1573 FQLRRVVSNPRSSGTSAASIRLRHLLQQAGKLQSERPS----FLLKLQVARCFQHLDAVY 1628
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGR YP+ PHLNH+ D+CR +L FAE +PLG GL WLK+H+ANLF GV K
Sbjct: 1629 FPHNIDFRGRCYPLPPHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNK 1686
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWL---TAEDPFQCLAACINLSEALKSSSPH 702
+S R A+V+ ++ AE+P+N L A+DP+Q L+A + L + + +
Sbjct: 1687 VSFAERQAWVDARREQLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKN 1746
Query: 703 SV--ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS----EIAVRVHE 756
S +S LPIHQDGSCNGLQHYAALGR+ AVNL+ GEKP DVYS + RVH
Sbjct: 1747 SAQFLSALPIHQDGSCNGLQHYAALGRDRRGGEAVNLIGGEKPRDVYSFVLEVVKQRVHA 1806
Query: 757 IMKRDSNKDPSKH-----PQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKR 809
R S P++ LA +LI+ + RK+VKQTVMT YGVT +GAR+Q+ R
Sbjct: 1807 DAARGSEGSGCSGAAPPPPESRLAALLIEHNLLQRKVVKQTVMTICYGVTAIGARDQVTR 1866
Query: 810 RLEEK-GHITDDRQLFAAACYAAKV 833
+LE+ G D+ L + Y ++V
Sbjct: 1867 QLEDLIGETVDEATLKSLGGYLSRV 1891
>gi|193203364|ref|NP_001122531.1| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
gi|148879470|emb|CAD21670.3| Protein Y105E8A.23, isoform a [Caenorhabditis elegans]
Length = 1138
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 152/412 (36%), Positives = 238/412 (57%), Gaps = 29/412 (7%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVTGNCMKK-VFEAL 493
+PM+VPP+ W GG L+ S +M R +E +T + VF+AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIA--GLVD------RNDVL-IPE------KPLS 538
+ LGST W +N+ +L VL+ ++ GN GL++ R+D IP+ +
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIK 657
Query: 539 EDMTEVQKWKWSVRK---AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
++ +V+K++ +K A K+ E +S C + ++ +A + + ++PHN+DFRGR
Sbjct: 658 KEDVDVEKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQT-LFFPHNMDFRGR 716
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ P+L+H+ DV R +L+FA+ + LG+ G WLK+H NL +G +++ S R+
Sbjct: 717 VYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEA 775
Query: 656 ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDG 714
E + + DSA +P+NG +WW+++++P+Q LAAC+ + A + S ++ S LPIHQDG
Sbjct: 776 ERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDG 835
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL- 773
SCNGLQHYAALGR+ VNL + P DVYS++A RV + ++D + A
Sbjct: 836 SCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARK 895
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
L + L V RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA
Sbjct: 896 LREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMDIPGEDAAIFA 947
>gi|237835433|ref|XP_002367014.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211964678|gb|EEA99873.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221506312|gb|EEE31947.1| DNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 2084
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 218/385 (56%), Gaps = 43/385 (11%)
Query: 486 MKKVFEALDT---------LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK- 535
M + F A DT LGS WR+NK VL V+E++W G + L R+ + E+
Sbjct: 1496 MARDFHAYDTALPRAVVSALGSQAWRINKAVLGVMEAVWERGLEVGRLPPRDSAGLEEEI 1555
Query: 536 ---------PLSEDMTEVQ-KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
P S + + + +++A K+ ER S LKL VAR + + Y
Sbjct: 1556 FQLRRVVSNPRSSGTSAASIRLRHLLQQAGKLQSERPS----FLLKLQVARCFQHLDAVY 1611
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PHN+DFRGR YP+ PHLNH+ D+CR +L FAE +PLG GL WLK+H+ANLF GV K
Sbjct: 1612 FPHNIDFRGRCYPLPPHLNHMGDDICRSLLVFAEAKPLGPQGLGWLKVHIANLF--GVNK 1669
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWL---TAEDPFQCLAACINLSEALKSSSPH 702
+S R A+V+ ++ AE+P+N L A+DP+Q L+A + L + + +
Sbjct: 1670 VSFAERQAWVDARREQLLQVAEDPLNPRSLHLLEQEADDPWQALSALLELKKVVAHGEKN 1729
Query: 703 SV--ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS----EIAVRVHE 756
S +S LPIHQDGSCNGLQHYAALGR+ AVNL+ GEKP DVYS + RVH
Sbjct: 1730 SAQFLSALPIHQDGSCNGLQHYAALGRDRRGGEAVNLIGGEKPRDVYSFVLEVVKQRVHA 1789
Query: 757 IMKRDSNKDPSKH-----PQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQIKR 809
R S P++ LA +LI+ + RK+VKQTVMT YGVT +GAR+Q+ R
Sbjct: 1790 DAARGSEGSGCSGAAPPPPESRLAALLIEHNLLQRKVVKQTVMTICYGVTAIGARDQVTR 1849
Query: 810 RLEEK-GHITDDRQLFAAACYAAKV 833
+LE+ G D+ L + Y ++V
Sbjct: 1850 QLEDLIGETVDEATLKSLGGYLSRV 1874
>gi|308470906|ref|XP_003097685.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
gi|308239803|gb|EFO83755.1| hypothetical protein CRE_14239 [Caenorhabditis remanei]
Length = 1135
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/411 (37%), Positives = 235/411 (57%), Gaps = 29/411 (7%)
Query: 441 VPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQEALKSVTGNCMKK-VFEALD 494
+PM VPP+ W GG L+ + +M R E + +T + VF+AL+
Sbjct: 537 LPMTVPPRPWIDKGTGGPLYTVGQDIIRNMMEFKSVRLNDEMRQRITSPSQGRPVFDALN 596
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNI--------AGLVDRNDVL-IPE------KPLSE 539
LGST W +N+ +L L++++ G+ R D +P+ K E
Sbjct: 597 QLGSTPWVINEPMLDTLKTVFNKSNQKDSEELLEKLGIPMRQDTFDVPDFVTEFGKVKKE 656
Query: 540 DMTEVQKWK-WSVRKAK--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D+ +V+K++ ++ RKA+ K+ E +S C ++ +A + + ++PHN+DFRGR
Sbjct: 657 DI-DVEKFRGYAKRKAEAIKMRNESNSLWCWMLYRVVLADHFRGQ-TLFFPHNMDFRGRV 714
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
YP+ P+L+H+ DV R +L+FA+ +PLG G WLK+H NL +G +++ S R+ E
Sbjct: 715 YPLSPYLSHMGDDVNRCILKFAKSQPLGSKGFDWLKLHCINL-TGTMKRSSVTDRMVEAE 773
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGS 715
L I DSA +P+ G +WW+++++P+Q LAAC+ + +A++ S S S LP+HQDGS
Sbjct: 774 RLLPMILDSARDPLGGEKWWMSSDEPWQTLAACVEIEQAMRYGSDVSSFQSQLPVHQDGS 833
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL-L 774
CNGLQHYAALGR+ VNL + P DVYS++A RV + K+D + AL L
Sbjct: 834 CNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRKQDEESNGEDRDVALKL 893
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
L V RK++KQTVMT+VYGVT GA QIKR+L+ +D +FA
Sbjct: 894 RDALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKALDIPGEDAAIFA 944
>gi|156341453|ref|XP_001620765.1| hypothetical protein NEMVEDRAFT_v1g176655 [Nematostella vectensis]
gi|156206078|gb|EDO28665.1| predicted protein [Nematostella vectensis]
Length = 417
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/259 (49%), Positives = 177/259 (68%), Gaps = 10/259 (3%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KLSVA +D F+ P N+DFRGR YP+ PH H+ D+ RG+L+FAEG PLG GLRW
Sbjct: 6 KLSVANHFRDRV-FWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPLGPDGLRW 64
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHLANL+ G +K S D R+ + + + E+ DSA+NP+ G+RWW+ ++P+Q LA C+
Sbjct: 65 LKIHLANLY-GAKKKSSLDERVEYTDQMMPEVLDSADNPLTGARWWMHGDEPWQVLATCM 123
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+++A++S P +SH P+HQDGSCNGLQHYAALG + A VNL+ ++P DVY+E+
Sbjct: 124 EIAKAVRSPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGARQVNLIPADRPQDVYAEV 183
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A V E D+ + +A +L D+V R++VKQTVMT VYGVTFVG R QI+R+
Sbjct: 184 AKLVEEARLHDAEQGHR------IATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQ 237
Query: 811 LEEKGHITDDRQLFAAACY 829
L++ D+R LF A+ Y
Sbjct: 238 LKDLD--LDERVLFEASAY 254
>gi|405963522|gb|EKC29086.1| DNA-directed RNA polymerase, mitochondrial [Crassostrea gigas]
Length = 689
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 205/344 (59%), Gaps = 24/344 (6%)
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSV-LESIWVSGGNIAGLVDRNDVL----IP----- 533
N + V ++L+ LG+ W++N ++L V LE + G L L P
Sbjct: 206 NSLHPVMDSLNILGTCGWKINTKMLDVVLELFRENAGAFLDLPPAKHTLQKPVFPLQETK 265
Query: 534 --EKPLSEDMTEVQKWK---WSV-RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
EK ++++ E++K K W+V KK E HS C L++A ++DE ++P
Sbjct: 266 ELEKQYAQEVEELKKRKADLWTVFYNLKKQRAETHSLWCHLHRTLTIADSLRDE-VIWFP 324
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
H+LDFRGR YP PHLN+ DV R + +FA G+PLG+ GL WLKIHL NL +G ++ S
Sbjct: 325 HSLDFRGRCYPFMPHLNYHGDDVRRSLFQFANGKPLGEKGLDWLKIHLINL-TGFAKRSS 383
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+ RL + +I DSA+NP+ G +WW T+++PFQ LAACI ++ A++S P +S+
Sbjct: 384 NKERLHLANTLMSDIMDSADNPLKGGKWWQTSDEPFQTLAACIEVTAAMRSKDPTQFVSY 443
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
P HQDGSCNGLQHYAALGR+ A +VNL P DVYS++ V +I +RD+ +
Sbjct: 444 FPTHQDGSCNGLQHYAALGRDQAGAESVNLSPFTHPQDVYSDVVDLVEKIRQRDAEEGLE 503
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+A+ L + RK +KQTVMTSVYGVT GA+ QI +++
Sbjct: 504 ------IAQKLDGLIKRKTIKQTVMTSVYGVTMYGAKLQIHKQI 541
>gi|456738227|gb|EMF62904.1| DNA-directed RNA polymerase [Stenotrophomonas maltophilia EPM1]
Length = 811
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 167/481 (34%), Positives = 249/481 (51%), Gaps = 54/481 (11%)
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV--LEGLDRSA 433
TA ++H + A+++P D + + +L G K + + VE LV + +R
Sbjct: 152 TAVMRHVIADAEFAPEDDKRLYLSDKDALLV--GMKLIELF--VEATGLVELVTVAERGK 207
Query: 434 KHMLIP----------------------YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+H+LI +PM+VPP+ W GGYL R
Sbjct: 208 RHLLIAGNQKVLDWLTKAHDSAALYQPVLMPMVVPPRPWTTPRDGGYL--TDIGGRADLV 265
Query: 472 RKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
R + A K M V++AL+ + +T W+VN VL V+ +W +GG +AGL +R +
Sbjct: 266 RTRNRAYKRELALVDMPNVYQALNAIQATAWKVNVPVLEVMRELWNAGGGVAGLPERELM 325
Query: 531 LIPEKP--LSED--------MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+P +P L D E ++WK K + N S R K+++A + +
Sbjct: 326 DLPSRPALLETDPDYFKEHHADEFKEWKRDRAKVYEANARSVSTRLAAAQKIALAEKFAE 385
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
Y+PHNLDFRGR YP+ P L D +G+L FA+G PLG+ G WL IH+AN F
Sbjct: 386 YPAIYFPHNLDFRGRCYPLPPTLTPQGDDAAKGLLTFAQGVPLGEDGAYWLAIHVANCF- 444
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GV+K+S + R+A+V H +I DSA +P++G R+W+ A+ PF LAAC +
Sbjct: 445 -GVDKVSFEERVAWVREHEEQILDSALDPLDGQRFWMDADSPFCALAACFEWLGYSLNGR 503
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK- 759
H +SHLPI DGSCNGLQ+++A+ R+++ AA NL+ KPAD+YS + E ++
Sbjct: 504 DH--VSHLPIALDGSCNGLQNFSAMLRDSVGGAATNLIPQPKPADIYSRVKDVAQEKLRA 561
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
R + DP LA L Q+ R +VKQ VMT YGVT G R Q+ + ++ G + D
Sbjct: 562 RAESGDP-------LAIKLDGQLTRDIVKQPVMTLPYGVTKSGMRAQVLSKFKKLG-MED 613
Query: 820 D 820
D
Sbjct: 614 D 614
>gi|26325937|dbj|BAB22998.2| unnamed protein product [Mus musculus]
Length = 462
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/243 (51%), Positives = 170/243 (69%), Gaps = 8/243 (3%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
+LS+A ++ F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL W
Sbjct: 8 RLSLAHDLR-HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDW 66
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL NL +G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+
Sbjct: 67 LKIHLINL-TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCM 125
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
++ A++S P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+
Sbjct: 126 EVAHAVRSPDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREV 185
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
A +V E ++D+ + +A++L + RK+VKQTVMT VYGVT G R QI++R
Sbjct: 186 ATQVEEFRQQDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKR 239
Query: 811 LEE 813
L E
Sbjct: 240 LRE 242
>gi|156088049|ref|XP_001611431.1| DNA-dependent RNA polymerase [Babesia bovis T2Bo]
gi|154798685|gb|EDO07863.1| DNA-dependent RNA polymerase, putative [Babesia bovis]
Length = 1088
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 171/531 (32%), Positives = 258/531 (48%), Gaps = 70/531 (13%)
Query: 351 NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPA-------------------DYSPP 391
++ K W A +G L+ L+E+ YVQ + A + + P
Sbjct: 395 TDDQKQWNSKQSAAVGGYLLHALVESCYVQVDLTTALRQTNSFAELDASMLIPDLNNADP 454
Query: 392 DVRPAFRHRFKTILKHPGQK-------------------TTKRYGVVECDPLVLEGL-DR 431
D RH K + Q K YGV+E + L D
Sbjct: 455 DSTKKKRHWLKKTVSRIRQSRFDASKVEIAAFAHKVHRHGVKVYGVLEMRECCMIHLRDA 514
Query: 432 SAKHML-IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
A+ ++ + +PM+ PK W GG L Y +RT Q V + +V
Sbjct: 515 VARGLVNLSCLPMVCEPKPWTSVASGGLALLKHYFIRT-----QCRPTYDVRVYDLSRVL 569
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
+ + G W++N VL VL+ +W D ++P + D T V+ +
Sbjct: 570 KVATSFGKVPWKINGNVLQVLQKLW-----------ETDAVLPVRSFLPDKTLVEADPST 618
Query: 551 VRKAKKINQERHSQRCDT-ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
+ +++ C E +L VA E Y+P N+DFRGR YP+ PHLNH++ D
Sbjct: 619 L--VNVMDRANALSECSLFERRLRVASDFLMEPRIYFPQNIDFRGRMYPLSPHLNHMADD 676
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
VCRG+L+FA+ +PLG+ G WLK+H++NL+ G++K+ R+A+VE + I +P
Sbjct: 677 VCRGLLKFADKKPLGERGFFWLKVHISNLY--GIDKVPLAERVAWVEKNTNMIQQLVADP 734
Query: 670 IN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+W E PFQ AA ++ AL+S +P+S S +P+HQDGSCNGLQHYAALGR
Sbjct: 735 FAELSQSFWRRVESPFQFYAASVDYVAALRSGNPYSYQSDIPVHQDGSCNGLQHYAALGR 794
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP---QALLAKILIDQ--V 782
+ AAVNL+ E+P DVY ++ + V ++ D S P ++ +AK+ ++ +
Sbjct: 795 DLSGGAAVNLIPDERPQDVYQQVLLEVIAKVRTDYQCTASIEPISKRSFMAKLCLEHGIL 854
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD--DRQLFAAACYAA 831
RK+VKQTVMT YGVT GA QI+ RL+E I ++Q+ A Y A
Sbjct: 855 RRKIVKQTVMTICYGVTRTGAVSQIEARLKEIDTIASMGNQQVKQLASYIA 905
>gi|391337781|ref|XP_003743243.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like
[Metaseiulus occidentalis]
Length = 1126
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 170/572 (29%), Positives = 278/572 (48%), Gaps = 28/572 (4%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P++ L ++ +++ +M +A V A +G +E I S + +
Sbjct: 372 PYVLALDKSRLVNLLLQEMRAFALAPGSS-SVSFTTVAARLGQKVELLYNIRSKVNGGVS 430
Query: 309 YKRKKIIAD-TEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGS 367
++ D E S+ R+ SLI + + N + PW R TQ +G
Sbjct: 431 DAITRLYGDYLERSGSQTTTPGREIWQSLIAKNP--QLAPCIGNLQENPWTRSTQVSVGR 488
Query: 368 RLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
L +L Q V+ P + H ++ + + + E +
Sbjct: 489 FLYSML-----RQLKVDVNIMKPNCDKRKLIHALYSVYRTNSARKHEELKAHEVLNTLYS 543
Query: 428 GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNC 485
+ H +PML PPK W Y+ +P + + S KQ A++
Sbjct: 544 KAEIENLHFDATSLPMLCPPKPWTRPEDTPYMISGVPLIRIPSEFSNKQMSAIRESPPEN 603
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--LSEDMTE 543
+ +AL+ LG T W+VN +L VL ++++ G++ ++ +P+KP +++
Sbjct: 604 IYPALDALNALGRTPWKVNNPILDVLTTVFLGEGDM-------ELSVPKKPSNMTKPEPS 656
Query: 544 VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHL 603
K + +++ E+++ CDT KLS+A K++ F++PHN+DF GRA+P
Sbjct: 657 AHKARVQATLSERKKAEKYALWCDTLHKLSIAHHFKNDV-FFFPHNMDFCGRAHPCPAQF 715
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
+HL D+ RG+L FAEG+PLG+ GL WLK+HL L +G + S + R+A+ + + +I
Sbjct: 716 HHLGDDLIRGLLLFAEGKPLGERGLWWLKLHLMKL-TGFSNERSAEERVAYADGIMDDIL 774
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSA NP+NG +WW T+EDP+Q LAAC ++ AL S P I HLPIH DG G QHYA
Sbjct: 775 DSARNPLNGRKWWQTSEDPWQTLAACKEIANALASPKPEEYICHLPIHHDGHYGGPQHYA 834
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
A G ++ A + + E P DVYS++A V + + +S +A +L +
Sbjct: 835 AFGNDSEGALPADTIPMETPRDVYSKVADAVESLREAESAAGSD------IASVLKGFIK 888
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
K VK++V T+VYG GA QI R+L+ +G
Sbjct: 889 GKTVKESVKTAVYGENRFGAYIQILRKLQVEG 920
>gi|307214460|gb|EFN89497.1| DNA-directed RNA polymerase, mitochondrial [Harpegnathos saltator]
Length = 1166
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 158/464 (34%), Positives = 228/464 (49%), Gaps = 64/464 (13%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAF------RHRFKTILKHPGQ 410
W R +G L +++ + + + P +P + PAF +H + T P
Sbjct: 550 WPRHILVNIGKFLYSIIVNDVKIPYGIKPG--APERLIPAFYLLFRNQHAYLTEEIKPHP 607
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
+ + + L E + +P +PP+ W N GG+LF + +R
Sbjct: 608 HLHRTFSESHPETLTFETV----------LLPTYIPPRPWINTNIGGFLFSKTDFIRDPY 657
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV-LESIWVSGGNIAGLVDRND 529
+E GS + V + LS S W+
Sbjct: 658 VGIFREG-------------------GSEELNVPQSPLSFPFLSEWM------------- 685
Query: 530 VLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHN 589
K L+E K + ++ E +S CD KLS+A +D+ F+ PHN
Sbjct: 686 -----KELAEKEKSRSKISTLAIQHRRKKNEMYSLWCDCLYKLSLANHFRDQ-VFWLPHN 739
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LDFRGRAYP+ PHL HL+SD+ R L FA+ +PLG GL WLKIH NL +G ++
Sbjct: 740 LDFRGRAYPVAPHLTHLTSDLGRSFLVFAQKKPLGPKGLDWLKIHAINL-TGMKKREPMK 798
Query: 650 GRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLP 709
RL F L I DSA NP+ G RWW +++P+Q LAAC + AL+S +P ++ P
Sbjct: 799 KRLEFANEILDLIIDSARNPLKGKRWWTESDEPWQTLAACKEIDNALQSPNPEEYLTGFP 858
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ + A +VNL + P DVYS + V E K+D+
Sbjct: 859 VHQDGSCNGLQHYAALGRDQIGAESVNLYPSDTPQDVYSVVVGMVEEFRKKDAENGVE-- 916
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+AK+L + RK++KQT+MT+VYGVT GA+ QI R+L +
Sbjct: 917 ----IAKVLEGHISRKVIKQTIMTTVYGVTKFGAKLQITRQLSD 956
>gi|75301087|sp|Q8L6J2.1|RPO2A_TOBAC RecName: Full=DNA-directed RNA polymerase 2A; AltName:
Full=NictaRpoT2-syl; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2A
gi|21425675|emb|CAC95025.1| mitochondrial and plastid RNA polymerase [Nicotiana tabacum]
Length = 332
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 114/154 (74%), Positives = 138/154 (89%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DPFQCLA CINLSEA++SSSP + +SH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAG
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
EKPADVYS IA RV +IMKRD+ +DP++ P A+ A++L++QVDRKLVKQTVMTSVYGVT+
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+GAR+QIKRRL+E+G I DD +LF AACYAAKV+
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVT 154
>gi|357516853|ref|XP_003628715.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522737|gb|AET03191.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 251
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 166/222 (74%), Gaps = 2/222 (0%)
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSR 368
K + + A+ E L+KE++ LR +V SLIK ++ +A ++K ++ KPWG++ Q K+GSR
Sbjct: 24 KGENLTAEENEKLAKEEKRLRNKVASLIKKQKKQQALGIVKGRDQAKPWGQEAQVKVGSR 83
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
L++LLIETAY++ P N PD+ PAF+H KTI + ++RYGV+ECDP++ +G
Sbjct: 84 LIQLLIETAYLEPPANKFGDGGPDIFPAFKHTLKTI-SNDSNNGSRRYGVIECDPMIQKG 142
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK 488
L+++A++M+IPY+PMLVPP W GY+KG YLFLPSYVMR HG+++Q++ALK N +
Sbjct: 143 LEKTARNMVIPYMPMLVPPNNWIGYDKGAYLFLPSYVMRIHGAKQQRDALKWAPKNQLDS 202
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+FEAL+TLG+TKWRVNK VL V++ IW +GG +A LVDR+DV
Sbjct: 203 IFEALNTLGNTKWRVNKSVLGVIDQIWANGGRVADLVDRDDV 244
>gi|341876528|gb|EGT32463.1| hypothetical protein CAEBREN_29975 [Caenorhabditis brenneri]
Length = 1223
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/417 (36%), Positives = 227/417 (54%), Gaps = 34/417 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY-----VMRTHGSRKQQEALKSVTGNCMKK-VFEALD 494
+PM VPP+ W GG L+ S ++ R E + +T + VF+AL+
Sbjct: 529 LPMTVPPRPWIDKGTGGPLYKTSQEIIRKMLEFKAVRLNDEMRQRITSPSQARPVFDALN 588
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIA--------GLVDRNDVL-IPE--------KPL 537
LGST W +N+ +L L+ ++ + A G+ R+D IP+ K
Sbjct: 589 QLGSTPWVINEPMLDTLKEVFEKSKDSASEPLLEKLGIPMRHDTFDIPDFVREFGKVKRE 648
Query: 538 SEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
D+ +++ +A K E +S C + ++ +A + ++PHN+DFRGR Y
Sbjct: 649 DVDVDRFREYAKKKAEAVKARNESNSLWCWMQYRVVLADHFRGR-TLFFPHNMDFRGRVY 707
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ P+L+H+ DV R +L+FA+ +PLG G WLK+H NL +G +++ S R+ E
Sbjct: 708 PLSPYLSHMGDDVNRCILKFAKSQPLGDKGYDWLKLHCINL-TGTMKRASVADRMLEAER 766
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-SHLPIHQDGSC 716
L I DSA NP+ G +WW+++++P+Q LAAC+ + +A S + S LP+HQDGSC
Sbjct: 767 LLPLILDSARNPLGGEKWWMSSDEPWQTLAACVEIEQATHFGSDIPLFPSQLPVHQDGSC 826
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL-LA 775
NGLQHYAALGR+ VNL E P DVYS++A+R+ D H AL L
Sbjct: 827 NGLQHYAALGRDNEGGVQVNLTRCETPNDVYSDVAMRLESTTSED-------HDVALKLR 879
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
+ L V RK++KQTVMT+VYGVT GA QIKR+L+ +D Q A Y A+
Sbjct: 880 QSLPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKALDIPGEDFQAALFARYLAR 936
>gi|427781025|gb|JAA55964.1| Putative mitochondrial/chloroplast dna-directed rna polymer
[Rhipicephalus pulchellus]
Length = 492
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/270 (48%), Positives = 175/270 (64%), Gaps = 9/270 (3%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E +S CD KLS+A +D F++PHN+DFRGR YP PH NHL SDV RG+L FA
Sbjct: 22 EMYSLWCDALYKLSIANHFRDRV-FWFPHNMDFRGRVYPCPPHFNHLGSDVVRGILLFAR 80
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
G PLG++GL WLKIHL NL +G ++ RL F + EI DSA+NP+ G RWW +
Sbjct: 81 GEPLGENGLDWLKIHLVNL-TGLKKREPVSERLRFANEMMPEILDSADNPMTGRRWWTKS 139
Query: 680 EDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA 739
++P+Q LA C ++ A++S P I +LP+HQDGSCNGLQHYAALGR+ AA VNL
Sbjct: 140 DEPWQTLACCKEVAAAVRSPDPTRHICYLPVHQDGSCNGLQHYAALGRDAQGAAQVNLQP 199
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
++P DVYS +A +++++ KD + Q +AK+L + RK+VKQTVMT VYGVT
Sbjct: 200 ADRPQDVYSGVAA----LVEQERQKDAANGLQ--IAKVLEGHIQRKVVKQTVMTVVYGVT 253
Query: 800 FVGAREQIKRRLEEKGHITDDRQLFAAACY 829
GA QI ++L++ + +AAA Y
Sbjct: 254 RFGAHLQILKQLKDLDDFPQE-HCWAAAHY 282
>gi|70937775|ref|XP_739650.1| DNA-dependent RNA polymerase [Plasmodium chabaudi chabaudi]
gi|56516804|emb|CAH79196.1| DNA-dependent RNA polymerase, putative [Plasmodium chabaudi
chabaudi]
Length = 485
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 239/413 (57%), Gaps = 26/413 (6%)
Query: 416 YGVV----ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
YGV+ C +L S H+ + Y+PM+ PKKW+ ++GG L L + +R +
Sbjct: 2 YGVIHMRESCANFLLSNAINS--HVPLNYLPMICKPKKWED-DQGGMLLLKNNFIRYN-- 56
Query: 472 RKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL-VDRNDV 530
+ L ++ M ++ + +G+ W+VNK++L +E +++G I + +++N
Sbjct: 57 ---IKPLFNLNVCNMTRIKNIVSEIGNVGWKVNKEILHYIEYAYMNGKTIGKIPLNKNYN 113
Query: 531 L---IPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYP 587
L I K + + E++K+ + ++N+ S+R KL+VA+ K+ E Y+P
Sbjct: 114 LPYNIDFKNNNNNNEEIKKYYLLKEEIARLNKCLISERPTFLQKLAVAKTFKENEKIYFP 173
Query: 588 HNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLS 647
HN+DFRGR YP+ PHL+H+ D+CR ++ F++ + +G +GL WLKIHLAN F G +KL+
Sbjct: 174 HNIDFRGRMYPLSPHLHHMGDDICRSLIVFSDDKEIGPNGLYWLKIHLANNF--GKDKLN 231
Query: 648 HDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
R+ +V+N++ I +NP + +W A++P+Q L+ I+L A+ S P S+
Sbjct: 232 FKKRIEWVDNNIDNIKKLRDNPFDNLEFWGLADNPWQALSVSIDLINAINCSDPSKYKSN 291
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+PI QDG+CNGLQHYAALG++ AVN++ ++P D+Y+ + V +K D + S
Sbjct: 292 IPIQQDGTCNGLQHYAALGKDKDGGRAVNILPSDEPQDIYTVVLDIVINKIKNDMDNGGS 351
Query: 768 KH--------PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
K+ PQ + + RK+VKQT+MT YGVT +GA+ Q+K +++
Sbjct: 352 KNESSTFLSKPQLANYCFKYNLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQ 404
>gi|294658854|ref|XP_461193.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
gi|202953437|emb|CAG89581.2| DEHA2F19470p [Debaryomyces hansenii CBS767]
Length = 1271
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 163/445 (36%), Positives = 239/445 (53%), Gaps = 36/445 (8%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP---YVPMLVPPKKWK 451
PAF + L++ K+ GV++ P + E +S + + Y+PML PPK W
Sbjct: 483 PAFLWGY---LRNHDSPAYKKTGVIKIHPYLSEEF-KSYESFFVDRSLYLPMLCPPKPWT 538
Query: 452 GYNKGGYLFLPSYVMRTHGSRKQQEALKSV--TGNCMKKVFEALDTLGSTKWRVNKQVLS 509
GGYL ++ T L TG +K ++E L+ LGS W +N L+
Sbjct: 539 SPVVGGYLNDLKPIINTDDISTSLFYLNKAHKTGQ-LKSLYEGLNVLGSLAWAINPSTLN 597
Query: 510 VLE---SIWVSGGNIAGLVDRNDVLIPEKPLSEDMT---EVQK--WKWSVRKAKKINQER 561
+ S+ I + V++P++P D + E K WK+ ++ K + QE
Sbjct: 598 IFNQAMSVNKEFLKIPPNFNELQVILPQEPKKPDYSSESEYNKAIWKYRIQVGKSL-QEY 656
Query: 562 H---SQRCDTELKLSVARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
H SQR + L +A K+ + FY PHN+DFRGRAYPM L+H D+ R +L F
Sbjct: 657 HAIKSQRVELNLIQQLANSFNKNGDMFYLPHNVDFRGRAYPMVSLLSHYQDDLVRSLLMF 716
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWL 677
+PLG +G WLK LA ++ G +KLS D R+ F++ +L I DSAENPI G WW
Sbjct: 717 WFAKPLGPNGFNWLKYQLAGVY--GKDKLSMDERIDFIDKNLNLIVDSAENPIKGKMWWK 774
Query: 678 TAEDPFQCLAACINLSEALK-----SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+ E P+Q L+ C +++ L+ + + +PIHQDGSCNGLQHYAALG++
Sbjct: 775 SGEKPWQTLSLCFEINKVLQYCQNDGNKVEEYLCRIPIHQDGSCNGLQHYAALGKDKEGG 834
Query: 733 AAVNLVAGEKP----ADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
+VNL+ + +DVY+E+ V + + + S +DPS Q LA + + + RK+VK
Sbjct: 835 ISVNLLQTDSSRPIRSDVYTEVLNIVKDQVLKHS-QDPSNQYQE-LAALALSILSRKVVK 892
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEE 813
QTVMTSVYGVT GA QI R++E
Sbjct: 893 QTVMTSVYGVTRHGATLQINMRIKE 917
>gi|428673226|gb|EKX74139.1| DNA-dependent RNA polymerase domain containing protein [Babesia
equi]
Length = 1194
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/443 (34%), Positives = 241/443 (54%), Gaps = 35/443 (7%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
PAF H+ IL++ G +T + EC L L D A+ ++ + +PM+ PK W
Sbjct: 569 PAFVHK---ILRN-GVRTYGTLEMKECCMLKLR--DVVARGLINLSALPMICEPKPWVTV 622
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
++GG L L Y +RT A + + VF ++ G W++N VL VL+
Sbjct: 623 SQGGSLILKHYFIRT-----TNRASFDIRVFDLSNVFSITNSFGKVPWKINAGVLDVLKK 677
Query: 514 IWVSGGNI---AGLVDRNDVLIPEKPLSEDMTEVQ-----KWKWSVRKAKKINQERHSQR 565
+W + ++ A L D++ + EK +++ ++ + K +W+ + K S+
Sbjct: 678 LWDADSSVPMRAYLPDKS--CLKEKGETKNTSDSKEIYNPKNRWANEEDKVRIANAISEC 735
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
E ++ +A E+ Y P ++DFRGR YP+ P+LNH D CR +L F+E RPLG+
Sbjct: 736 SLFERRIYIAENFIHEQKLYLPASIDFRGRLYPLSPYLNHACDDACRSLLTFSEVRPLGE 795
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR--WWLTAEDPF 683
GL WLK+H++NL+ G++KL D R+ +V+N + I +NP + S +W AE PF
Sbjct: 796 RGLFWLKVHVSNLY--GIDKLPFDDRIVWVDNQMSSIEKLVKNPFSDSSQDFWSKAEKPF 853
Query: 684 QCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKP 743
Q A+ L A+ S PH +S +P+ QDGSCNGLQHY+ALGR+ +VNL+ +KP
Sbjct: 854 QFFASACELVSAIHSKDPHKYLSSIPVQQDGSCNGLQHYSALGRDYNGGLSVNLIDTDKP 913
Query: 744 ADVYSEIAVRVHEIMKRDSNKDPSKHPQALL-------AKILIDQ--VDRKLVKQTVMTS 794
DVY ++ + V + R+ + P + AK+ ID + RK VKQTVMT
Sbjct: 914 QDVYKKVLLEVISKVTREFQRAPPTSGAVGIANTPYDCAKLCIDHGLLKRKTVKQTVMTI 973
Query: 795 VYGVTFVGAREQIKRRLEEKGHI 817
YGVT +GA +QI +L+++ +
Sbjct: 974 CYGVTRMGAIDQIDNKLKDEASL 996
>gi|399219089|emb|CCF75976.1| unnamed protein product [Babesia microti strain RI]
Length = 1095
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 210/392 (53%), Gaps = 28/392 (7%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
Y+PM++ P+ W YNKGG + +RT ++ T +VF ++ +
Sbjct: 507 YLPMVIEPRPWTKYNKGGCYSSKAIFIRTPTGSYCDYSVYDFT-----RVFNIVNAISRV 561
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ 559
W++N ++L ++ W S L + L +D+ E++ K + K +
Sbjct: 562 PWKINTRMLKLISLAWDSSSARLNLWPHLPIKSKISLLPDDLNEIENIKMYAKDPKVV-- 619
Query: 560 ERHSQRCDTEL-----KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E + R TE +LS+A+ + Y+PHN+DFRGR YPM HLNH+ D+CR +
Sbjct: 620 EFQNARLSTETPLLQRRLSIAKEFSNAAEIYFPHNIDFRGRLYPMSSHLNHMGDDLCRSL 679
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH------LYEIF----- 663
L FA G+PLG GL WLKIH+ANLF G +K+ RL +VE++ L +IF
Sbjct: 680 LLFARGKPLGDRGLFWLKIHIANLF--GQDKIQFQHRLDWVEDNIKNFERLVKIFNPSLI 737
Query: 664 DSAENPINGSRW--WLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
D + W W++A+DP+Q +A L ALK P IS +PI QDGSCNGLQH
Sbjct: 738 DIPTKLLEDDVWNFWISADDPWQAYSAITELLNALKLDDPEEYISCIPIQQDGSCNGLQH 797
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ +AVNL + P DVYS + V E ++ D N K + + +
Sbjct: 798 YAALGRDYNGGSAVNLTPSDSPQDVYSTVLQAVIEKVQND-NVIGEKDYEISAKCVQLGL 856
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT YGVT GA EQIKR++ E
Sbjct: 857 LKRKVVKQTVMTICYGVTRSGAVEQIKRQIIE 888
>gi|68070003|ref|XP_676913.1| DNA-dependent RNA polymerase [Plasmodium berghei strain ANKA]
gi|56496821|emb|CAH94868.1| DNA-dependent RNA polymerase, putative [Plasmodium berghei]
Length = 845
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 244/438 (55%), Gaps = 41/438 (9%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVV----ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKW 450
P F H + K YGV+ C +L S H+ + Y+PM+ PKKW
Sbjct: 224 PVFVHSYI-------WKNNNWYGVIHMRESCANFLLNNAINS--HVPLNYLPMICKPKKW 274
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ ++GG L L + +R + + L ++ M ++ + +G+ W+VNK++L
Sbjct: 275 EN-DQGGMLLLKNNFIRYN-----IKPLFNLNVCNMSRIKNIVSEIGNVGWKVNKEILHY 328
Query: 511 LESIWVSGGNIAGL-VDRNDVLIPEKPLSEDMTEVQKWKWSV-------RKAKKINQERH 562
+E +++G I + +++N L P + D+ + + + ++N+
Sbjct: 329 IEYAYMNGKTIGKIPLNKNYNL----PYNIDLKKNNNNNEEIKKFYLLKEEITRLNKCLI 384
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
S+R KL+VA+ K+ E Y+PHN+DFRGR YP+ PHL+H+ D+CR ++ F+ G
Sbjct: 385 SERPTFLQKLAVAKTFKENEQIYFPHNIDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEE 444
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
+G +GL WLK+HLAN F G +KL+ R+ +V+ ++ I +ENP +W A++P
Sbjct: 445 IGPNGLYWLKVHLANNF--GKDKLNFKKRIEWVDQNINNIKKLSENPFENLEFWGLADNP 502
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
+Q LA I+L AL SS P S++PI QDG+CNGLQHYAALG++ AVN++ ++
Sbjct: 503 WQALAVSIDLINALNSSDPSKYKSNMPIQQDGTCNGLQHYAALGKDKDGGRAVNILPSDE 562
Query: 743 PADVYS---EIAV-RVHEIMKRDSNKDPSKH--PQALLAKILI--DQVDRKLVKQTVMTS 794
P D+Y+ +I + ++ M NK+ S + ++ LA + + RK+VKQT+MT
Sbjct: 563 PQDIYTVVLDIVISKIKNDMDNGGNKNESTNFLNKSELANYCFKYNLLKRKVVKQTIMTI 622
Query: 795 VYGVTFVGAREQIKRRLE 812
YGVT +GA+ Q+K +++
Sbjct: 623 CYGVTSIGAKNQVKGKIQ 640
>gi|255585837|ref|XP_002533596.1| conserved hypothetical protein [Ricinus communis]
gi|223526525|gb|EEF28787.1| conserved hypothetical protein [Ricinus communis]
Length = 395
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 168/241 (69%), Gaps = 4/241 (1%)
Query: 168 REMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPL 227
R M +K+ +L++RQVK ETEAWE V EYKEL M EK+LAPNLP++K LFLGWF P
Sbjct: 150 RGMGSKKYQMLKKRQVKIETEAWEWAVKEYKELLMDMCEKKLAPNLPYMKSLFLGWFEPF 209
Query: 228 SEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAV 287
+AI +EQ++ R K + A+AP+ + LPAD +AVI MHK++ LVM G E C +VV AA
Sbjct: 210 RDAILKEQELIRVGKNRTAFAPYFDQLPADMMAVITMHKLVALVMTGGEHGCARVVAAAC 269
Query: 288 HIGMAIEQEIRIHSFLEKTK---NYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
IG AIEQE+RIH FLEKTK + KK D KE+E LRK+V LIK +++
Sbjct: 270 LIGAAIEQEVRIHKFLEKTKKRNSNDSKKNEEDESNGAVKEQEKLRKKVTDLIKKQKLPA 329
Query: 345 AQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
++++K ++++ W +DT+AK+GSRL+ELLI+TAY+Q P + PPD+RPAF H F+
Sbjct: 330 VRQIVKGHDDSQSWTQDTKAKVGSRLIELLIQTAYIQPPADQLADGPPDIRPAFAHTFRN 389
Query: 404 I 404
+
Sbjct: 390 V 390
>gi|82706057|ref|XP_727223.1| DNA-dependent RNA polymerase [Plasmodium yoelii yoelii 17XNL]
gi|23482964|gb|EAA18788.1| DNA-dependent RNA polymerase-related [Plasmodium yoelii yoelii]
Length = 697
Score = 245 bits (625), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/434 (33%), Positives = 233/434 (53%), Gaps = 33/434 (7%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVV----ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKW 450
P F H + K YGV+ C +L S H+ + Y+PM+ PKKW
Sbjct: 76 PVFVHSYI-------WKNNNWYGVIHMRESCANFLLNNAINS--HVPLNYLPMICKPKKW 126
Query: 451 KGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
+ ++GG L L + +R + + L ++ M ++ + +G+ W+VNK++L
Sbjct: 127 EN-DQGGMLLLKNNFIRYN-----IKPLFNLNVCDMSRIKNIVSEIGNVGWKVNKEILHY 180
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK----KINQERHSQRC 566
+E +++G I + + +P ++ + K ++N+ S+R
Sbjct: 181 IEYAYMNGKTIGKIPLNKNYNLPNNIDLKNNNNNNEEIKKYYLLKEEITRLNKCLISERP 240
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
KL+VA+ K E Y+PHN+DFRGR YP+ PHL+H+ D+CR ++ F+ G +G +
Sbjct: 241 TFLQKLAVAKTFKKNEQIYFPHNIDFRGRMYPLSPHLHHMGDDICRSLIVFSNGEEIGPN 300
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
GL WLK+HLAN F G +KL+ R+ +V+ ++ I ENP +W A++P+Q L
Sbjct: 301 GLYWLKVHLANNF--GKDKLNFKKRIEWVDQNINNIKKLKENPFENLEFWGLADNPWQAL 358
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
A I+L AL SS+P S++PI QDG+CNGLQHYAALG++ AVN++ ++P D+
Sbjct: 359 AVSIDLINALNSSNPSKYKSNIPIQQDGTCNGLQHYAALGKDKDGGRAVNILPSDEPQDI 418
Query: 747 YSEIAVRVHEIMKRD-SNKDPSKHPQALLAK-------ILIDQVDRKLVKQTVMTSVYGV 798
Y+ + V +K D N D +L K + + RK+VKQT+MT YGV
Sbjct: 419 YTVVLDIVINKIKNDIDNGDNKNENTNILTKSELANYCFKYNLLKRKVVKQTIMTICYGV 478
Query: 799 TFVGAREQIKRRLE 812
T +GA+ Q+K +++
Sbjct: 479 TSIGAKNQVKGKIQ 492
>gi|156098707|ref|XP_001615369.1| DNA-dependent RNA polymerase [Plasmodium vivax Sal-1]
gi|148804243|gb|EDL45642.1| DNA-dependent RNA polymerase, putative [Plasmodium vivax]
Length = 1306
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/421 (33%), Positives = 242/421 (57%), Gaps = 32/421 (7%)
Query: 416 YGVVECDPLVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
YGV+ L +A + IP ++PM+ PKKW +++GG L L + +R +
Sbjct: 689 YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT-HSEGGMLLLKNNFIRCN---- 743
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ L ++ ++++ + +G+ +W VN+++L ++E + G I + + + +P
Sbjct: 744 -VKPLFNIDVCNLERIKSVVSQMGNVRWEVNEEILHLIEYAYNKGITIGNIPRKQNYSLP 802
Query: 534 EKP---LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
P +++ +++K+ + ++N+ S+R K+++A+ +K+ + Y+PHN+
Sbjct: 803 SGPSHTAKQNVEDIKKYYLLREEISRLNKCLISERPTFLQKIAIAKTLKNCKVIYFPHNI 862
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGR YP+ PHL+H+S D+CR ++ F + +G GL WLKIHLAN F G +KL+ +
Sbjct: 863 DFRGRMYPLSPHLHHMSDDICRSLITFHDREEIGPRGLFWLKIHLANNF--GKDKLTFEQ 920
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R+ +V+++L I +ENP +W TAE P+Q L+ ++L+ AL+ P S++P+
Sbjct: 921 RINWVDSNLGNIKRLSENPFQHVDFWSTAEKPWQALSVSMDLTRALECPDPSKYRSNIPV 980
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD--------- 761
QDG+CNGLQHYAALGR+ AVN++ ++P D+Y+ + V +K D
Sbjct: 981 QQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVLEIVRSKVKADLDGAASPPK 1040
Query: 762 -----SNKDPSKHP---QALLAKIL--IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
S+ P+ P + LAK D + RK+VKQT+MT YGVT VGA++Q+K ++
Sbjct: 1041 GDRGKSSGTPNCAPPRCREHLAKCCFQFDLLKRKVVKQTIMTICYGVTSVGAKDQVKGKI 1100
Query: 812 E 812
+
Sbjct: 1101 Q 1101
>gi|2330562|emb|CAA74929.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 282
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/212 (60%), Positives = 155/212 (73%), Gaps = 8/212 (3%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ--RTKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q ++KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQE 282
>gi|9857985|gb|AAG00950.1|AF273674_1 DNA-dependent RNA polymerase [Plasmodium falciparum]
Length = 1503
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 233/453 (51%), Gaps = 61/453 (13%)
Query: 411 KTTKRYGVVE----CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
K YGV+ C +L S H+ + Y+PM+ PK+W+ + +GG L L + +
Sbjct: 856 KNNNWYGVIHMRECCANYLLNNAINS--HIPLNYLPMICKPKRWENF-EGGMLLLKNSFI 912
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
R + + L ++ + ++ + +G+ W++NK++L +E ++ G I +
Sbjct: 913 RCN-----IKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPL 967
Query: 527 RNDVLIPE--KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
+ +P+ ++ E++K+ + ++N+ S+R KL+VA+ KD +
Sbjct: 968 YKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDII 1027
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F G +
Sbjct: 1028 YFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKD 1085
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
KLS R+ +V+ ++ I + P + +W AE P+Q LA I+L AL+S +
Sbjct: 1086 KLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKY 1145
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
S +PI QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1146 KSSIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMN 1205
Query: 765 DPSKHPQALLAKIL---------------------------------------------I 779
+ H +++ +
Sbjct: 1206 ISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKF 1265
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
D + RK+VKQT+MT YGVT +GA+ Q+K +++
Sbjct: 1266 DLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQ 1298
>gi|124804211|ref|XP_001347935.1| DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
gi|23496188|gb|AAN35848.1|AE014839_57 DNA-dependent RNA polymerase [Plasmodium falciparum 3D7]
Length = 1531
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 233/453 (51%), Gaps = 61/453 (13%)
Query: 411 KTTKRYGVVE----CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
K YGV+ C +L S H+ + Y+PM+ PK+W+ + +GG L L + +
Sbjct: 884 KNNNWYGVIHMRECCANYLLNNAINS--HIPLNYLPMICKPKRWENF-EGGMLLLKNSFI 940
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
R + + L ++ + ++ + +G+ W++NK++L +E ++ G I +
Sbjct: 941 RCN-----IKPLFNLNVCNLNRIKNIVSEIGNVGWKINKEILHYIEYAYIHGITIGKIPL 995
Query: 527 RNDVLIPE--KPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGF 584
+ +P+ ++ E++K+ + ++N+ S+R KL+VA+ KD +
Sbjct: 996 YKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFLQKLAVAKTFKDNDII 1055
Query: 585 YYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVE 644
Y+PHN+DFRGR YP+ PHL+H+S D+CR ++ FAE + +G GL WLKIHLAN F G +
Sbjct: 1056 YFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLFWLKIHLANTF--GKD 1113
Query: 645 KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSV 704
KLS R+ +V+ ++ I + P + +W AE P+Q LA I+L AL+S +
Sbjct: 1114 KLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVAIDLKNALESPNASKY 1173
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK 764
S +PI QDG+CNGLQHYAALG++ AVN++ ++P D+YS + V +K D
Sbjct: 1174 KSSIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSVVLDIVISKIKNDLMN 1233
Query: 765 DPSKHPQALLAKIL---------------------------------------------I 779
+ H +++ +
Sbjct: 1234 ISNGHHNNIISFSINENIKTNKKYNNNINNNINNYNNNNHNRNSNSNVNKNELASYCFKF 1293
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
D + RK+VKQT+MT YGVT +GA+ Q+K +++
Sbjct: 1294 DLLKRKVVKQTIMTICYGVTSIGAKNQVKGKIQ 1326
>gi|221056236|ref|XP_002259256.1| dna-dependent rna polymerase [Plasmodium knowlesi strain H]
gi|193809327|emb|CAQ40029.1| dna-dependent rna polymerase, putative [Plasmodium knowlesi strain H]
Length = 1348
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 242/437 (55%), Gaps = 52/437 (11%)
Query: 416 YGVVECDPLVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
YGV+ L +A + IP ++PM+ PKKW + +GG + L + +R +
Sbjct: 719 YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT-HAEGGMILLKNNFIRCN---- 773
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ L ++ ++++ + +G+ +W++N+++L+++E + G I + + + +P
Sbjct: 774 -VKPLFNIDVCNLERIKNIVSQIGNVRWKINEEILNLIEYAYAQGITIGNIPRKQNYDLP 832
Query: 534 EKPLS---EDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
P +D+ +++K+ + ++N+ S+R K++VA+ +K+ E Y+PHN+
Sbjct: 833 NGPSDMGRKDVEDIKKYYLLKEEISRLNKCLISERPTFLQKIAVAKTLKNCEMIYFPHNI 892
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
DFRGR YP+ PHL+H+S D+CR ++ F + +G GL WLKIHL+N F G +KL+ +
Sbjct: 893 DFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGPRGLFWLKIHLSNNF--GKDKLNFEE 950
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
R+ +V+++L I +ENP +W AE P+Q L+ ++L+ AL+ P S++PI
Sbjct: 951 RIKWVDDNLDNIKKLSENPFEHLDFWNMAEKPWQALSVSMDLTRALECPDPSKYRSNIPI 1010
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR--DSNKDPSK 768
QDG+CNGLQHYAALGR+ AVN++ ++P D+Y+ + EI+K ++ D +
Sbjct: 1011 QQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVL----EIVKSKISADLDGTA 1066
Query: 769 HPQAL-------------------------------LAKILI--DQVDRKLVKQTVMTSV 795
P + LAK D + RK+VKQT+MT
Sbjct: 1067 TPTTMGPTNSTSGSINSINSGNGGNAAMSTPACRGELAKYCFKYDLLKRKVVKQTIMTIC 1126
Query: 796 YGVTFVGAREQIKRRLE 812
YGVT VGA++Q+K +++
Sbjct: 1127 YGVTSVGAKDQVKGKIQ 1143
>gi|256080007|ref|XP_002576275.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna
polymerase [Schistosoma mansoni]
Length = 976
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 220/381 (57%), Gaps = 31/381 (8%)
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
+R S+ ++A +V +FE L T+ ++L L + SGGN
Sbjct: 394 VRHEFSKSDEKASSNVRRKDTPAIFEVLAEF-PTEVTNEIKILDYLIQVARSGGN----- 447
Query: 526 DRNDVLIPE---KP----LSEDMTEVQKWKWSVRKAKKINQERHSQRCD---TEL-KLSV 574
++ IPE KP L +MT ++ + + RK Q+ + + C TEL +LS+
Sbjct: 448 --ENLSIPEWRSKPKRVDLRNNMTAKER-RLAYRKYHSDRQD-YGEFCSLWSTELYRLSI 503
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A + +D+ ++PH++DFRGR YP PH NH SDV R ++ FA+G PLG +GL WLKIH
Sbjct: 504 ANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIVFAKGLPLGPNGLDWLKIH 562
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
L NL +G ++ +H RL + ++ + +I DSAE P +G RWW +P+Q LA C+ L
Sbjct: 563 LVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGRRWWQNQAEPWQILACCMELKN 621
Query: 695 ALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
AL S P S +SH P+HQDGSCNGLQHYAALGR+ A +VNL + P D+YS++
Sbjct: 622 ALSHPSGPESYVSHFPVHQDGSCNGLQHYAALGRDLRGAKSVNLTSMNCPQDLYSDVVEI 681
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + D++ S +AK L V RK++KQ++MT+VYGVT GA EQI+++L +
Sbjct: 682 VEEQRRIDADGGNS------IAKTLEGFVRRKVIKQSIMTTVYGVTSYGATEQIRKQLRD 735
Query: 814 KGHITDDRQLFAAACYAAKVS 834
+ L A+ Y A+++
Sbjct: 736 LPDFPKE-SLLPASRYLARLT 755
>gi|353230079|emb|CCD76250.1| t3/t7 bacteriophage-related mitochodrial DNA-directed rna
polymerase [Schistosoma mansoni]
Length = 976
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/381 (38%), Positives = 220/381 (57%), Gaps = 31/381 (8%)
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
+R S+ ++A +V +FE L T+ ++L L + SGGN
Sbjct: 394 VRHEFSKSDEKASSNVRRKDTPAIFEVLAEF-PTEVTNEIKILDYLIQVARSGGN----- 447
Query: 526 DRNDVLIPE---KP----LSEDMTEVQKWKWSVRKAKKINQERHSQRCD---TEL-KLSV 574
++ IPE KP L +MT ++ + + RK Q+ + + C TEL +LS+
Sbjct: 448 --ENLSIPEWRSKPKRVDLRNNMTAKER-RLAYRKYHSDRQD-YGEFCSLWSTELYRLSI 503
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A + +D+ ++PH++DFRGR YP PH NH SDV R ++ FA+G PLG +GL WLKIH
Sbjct: 504 ANQYRDKI-IWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIVFAKGLPLGPNGLDWLKIH 562
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
L NL +G ++ +H RL + ++ + +I DSAE P +G RWW +P+Q LA C+ L
Sbjct: 563 LVNL-TGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGRRWWQNQAEPWQILACCMELKN 621
Query: 695 ALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
AL S P S +SH P+HQDGSCNGLQHYAALGR+ A +VNL + P D+YS++
Sbjct: 622 ALSHPSGPESYVSHFPVHQDGSCNGLQHYAALGRDLRGAKSVNLTSMNCPQDLYSDVVEI 681
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + D++ S +AK L V RK++KQ++MT+VYGVT GA EQI+++L +
Sbjct: 682 VEEQRRIDADGGNS------IAKTLEGFVRRKVIKQSIMTTVYGVTSYGATEQIRKQLRD 735
Query: 814 KGHITDDRQLFAAACYAAKVS 834
+ L A+ Y A+++
Sbjct: 736 LPDFPKE-SLLPASRYLARLT 755
>gi|224116192|ref|XP_002331984.1| predicted protein [Populus trichocarpa]
gi|222832108|gb|EEE70585.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 171/257 (66%), Gaps = 28/257 (10%)
Query: 196 EYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLP 255
EYKEL M E +LAPNLP+ K LFLGWF P ++AI +EQ++ R K + YAP+ +LLP
Sbjct: 5 EYKELLKDMCEHKLAPNLPYTKSLFLGWFEPFTDAIAKEQELIRMGKSRKGYAPYFDLLP 64
Query: 256 ADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKII 315
ADK++VI MH++ +VM G E C +VV AA IG AIEQEIRIH+ LEKT+ K+K+
Sbjct: 65 ADKMSVIAMHQLGAMVMTGGEHGCARVVTAACMIGDAIEQEIRIHNILEKTR--KKKEKA 122
Query: 316 ADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
D++ + E S VM+ Q+ L+ K+GSRL+ELL++
Sbjct: 123 NDSKNGVEGE-------------SPAVMKEQENLRK------------KVGSRLIELLLQ 157
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
TAY+Q P + SP + RPAF H F+T+ + +K K+YGV++CDPLVL+GL+++A+H
Sbjct: 158 TAYIQPPSDQLADSPSEPRPAFVHTFRTV-SYENKKGAKKYGVIQCDPLVLKGLEKTARH 216
Query: 436 MLIPYVPMLVPPKKWKG 452
M+IPY+PMLVPP +W+G
Sbjct: 217 MVIPYMPMLVPPLRWRG 233
>gi|426230933|ref|XP_004009513.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Ovis aries]
Length = 981
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 169/258 (65%), Gaps = 10/258 (3%)
Query: 556 KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVL 615
++ +E S R D +LS+A+ +++ F+ PHN+DFRGR YP PH NHL SD+ R +L
Sbjct: 516 RVAREMQSLRADALYRLSLAQHLRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALL 574
Query: 616 EFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRW 675
EFA+GRPLG GL WLKIHL NL +G ++ S R + + + +I DSAE P+ G +W
Sbjct: 575 EFAQGRPLGPHGLDWLKIHLVNL-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKW 633
Query: 676 WLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAV 735
W+ A++P+Q LA C+ +++ + S P + ISH P+HQ GLQHYAALGR++ A +V
Sbjct: 634 WMEADEPWQTLACCMEIAQVVHSPDPTTYISHFPVHQ-APGMGLQHYAALGRDSTGATSV 692
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
NL + P DVYSE+A +V K+D+ + +A++L + RK+VKQTVMT V
Sbjct: 693 NLSPSDLPQDVYSEVAAQVEVFRKQDAKQG------VRVAQVLEGFISRKVVKQTVMTVV 746
Query: 796 YGVTFVGAREQIKRRLEE 813
YGVT GAR QI+RRL E
Sbjct: 747 YGVT-RGARLQIERRLRE 763
>gi|317487306|ref|ZP_07946101.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
gi|316921496|gb|EFV42787.1| DNA-dependent RNA polymerase [Bilophila wadsworthia 3_1_6]
Length = 882
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 197/685 (28%), Positives = 320/685 (46%), Gaps = 93/685 (13%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
L RQ++ E E +R D Y A+ E+ N + K L P++ AI +
Sbjct: 25 LFARQIELEKEMADRGRDRYYTTVARNTERNAEANTSYGKMLLKRGIEPMARAI---SEF 81
Query: 238 QRTKKQKAAYAPH-----IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMA 292
+ KQ A H +E + VA I + K++ + + + ++ +G
Sbjct: 82 MESAKQGGAGRRHKAVGMLEGMDVQVVAFIALRKVLDTF-----SQSMPYQRVSILVGRE 136
Query: 293 IEQEIRIHSFLEKTKNYKR--KKIIADTEEVLSKEKELLRKRVN-SLIKSKRVMEAQKLL 349
+E E ++ E+ + R ++ IA SK ++ R +N + KS V
Sbjct: 137 VEMEKKLTELKEQDPDRYRMTQRYIAG-----SKARKYRRTVLNYAFGKSTTV------- 184
Query: 350 KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
E +PW LG +L+EL +E+ + H V P+ + + KT+ +
Sbjct: 185 ---EYEPWAEADCLHLGQKLIELAMESCGIFHLVQ---------VPSQKVKGKTMFQ--- 229
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKH--MLIP-YVPMLVPPKKWKGYNKGGYL--FLPSY 464
+ Y + E P E ++R H M+ P Y+P L+ PK W+G GGY LP
Sbjct: 230 ---STHYSL-EPTPSCREWVERHKDHASMMYPDYLPTLIEPKPWEGAGGGGYYSDALPRL 285
Query: 465 VMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW-VSGGNIA 522
+ G+ EAL K + M V A++ L +T W +N V V +W + G +A
Sbjct: 286 SLVKTGNLGYLEALDKRIQAGEMDTVINAVNALQNTGWSINPTVFEVASYLWDETDGGVA 345
Query: 523 GLVDRNDVLIPEKP-LSEDMTEV------------------QKWKWSVRKAKKINQERHS 563
GL R+ +P P D+T+ +WK + +++N
Sbjct: 346 GLPPRDGYRLPPCPTCGADLTDTAAARVRHTCLDALPLEDFNEWKKEAFRIRELNISLFG 405
Query: 564 QRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL 623
QR L++A R KDE F++P+ LDFRGR Y + +L +D+ +G+L FAEG+PL
Sbjct: 406 QRIGVAKTLTMAARFKDEPRFFFPYQLDFRGRIYAVPSYLTPQGTDLAKGLLRFAEGKPL 465
Query: 624 GK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
G +RWL IH +N F G +K+S D R ++V H EI + AE+P + + WW A++P
Sbjct: 466 GTMQAVRWLAIHGSNCF--GNDKVSLDDRHSWVLQHQQEILECAEDPFSHA-WWHEADEP 522
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
F LA C+ + ++ +SH+P+ DG+CNGLQ ++ + R+ + +AVNL+ K
Sbjct: 523 FCFLAFCLEWAGYVREGL--DFVSHIPVAMDGTCNGLQIFSLILRDKVGGSAVNLLPAAK 580
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSK------------HPQALLAKILIDQ-VDRKLVKQ 789
P D+Y +A +V +K D+ DP K + A A IL+D ++RK K+
Sbjct: 581 PQDIYQIVADKVIGKLKTDA-ADPDKDAIVTTKEGKAFYNPAKSAAILLDMGINRKTTKR 639
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEK 814
VM YG T RE + +++K
Sbjct: 640 QVMVLPYGGTKESCREYSEEWVKDK 664
>gi|389583795|dbj|GAB66529.1| DNA-dependent RNA polymerase [Plasmodium cynomolgi strain B]
Length = 1486
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 241/441 (54%), Gaps = 65/441 (14%)
Query: 416 YGVVECDPLVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
YGV+ L +A + IP ++PM+ PKKW +++GG + L + +R +
Sbjct: 862 YGVIHMRECCANYLLNNAINSHIPLNHLPMISKPKKWT-HSEGGMILLKNNFIRCN---- 916
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ L ++ ++++ + +G+ +W++N ++L ++E +++G I + + + ++P
Sbjct: 917 -VKPLFNIDVCNLERIKNIVSQIGNIRWKINDEILYLIEYAYMNGITIGNIPRKQNYVLP 975
Query: 534 EKPLSEDMT-----EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
PL DMT +++K+ + ++N +C L +A+ +K+ E Y+PH
Sbjct: 976 NSPL--DMTKKNADDIKKYYLLREEISRLN------KC-----LIMAKTLKNCEVIYFPH 1022
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
N+DFRGR YP+ PHL+H+S D+CR ++ F + +G GL WLK+HLAN F G +KL+
Sbjct: 1023 NIDFRGRMYPLSPHLHHMSDDICRSLITFHDKEEIGPRGLFWLKVHLANNF--GKDKLNF 1080
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
+ R+++V+ +L I +ENP +W AE P+Q L+ I+L++A++ P S++
Sbjct: 1081 EQRISWVDANLGNIKRLSENPFEHMEFWNLAEKPWQALSVAIDLTKAMQCPDPSKYRSNI 1140
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN----- 763
P+ QDG+CNGLQHYAALGR+ AVN++ ++P D+Y+ + V ++ D +
Sbjct: 1141 PVQQDGTCNGLQHYAALGRDYDGGKAVNIIPSDEPQDIYTVVLEIVRSKIRADLDGAAVT 1200
Query: 764 ------------------------------KDPSKHPQALLAKIL--IDQVDRKLVKQTV 791
K S + + LA+ D + RK+VKQT+
Sbjct: 1201 PTGGSSGTSGGVSADSSSGVSGDISGGGAPKSSSTYSRGDLAQYCFQFDLLKRKVVKQTI 1260
Query: 792 MTSVYGVTFVGAREQIKRRLE 812
MT YGVT VGA++Q+K +++
Sbjct: 1261 MTICYGVTSVGAKDQVKGKIQ 1281
>gi|15888521|ref|NP_354202.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
gi|15156227|gb|AAK86987.1| DNA-directed RNA polymerase [Agrobacterium fabrum str. C58]
Length = 863
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/561 (29%), Positives = 269/561 (47%), Gaps = 83/561 (14%)
Query: 286 AVHIGMAIEQEIRIHSFLEKTKN---YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
++ + +E E+ ++F K+ Y RKKI ++ ++ + KR
Sbjct: 129 SIRLAAMVEDELFFNAFKGHDKDAYEYARKKI---------------SEQTHNAVHQKRA 173
Query: 343 MEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFK 402
M K E + W +D +AK+G +L+E+ +E + F+
Sbjct: 174 MTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQTGL---------------------FE 212
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIP-YVPMLVPPKKWKGYNKGGYLFL 461
+ + G T Y V + L + S L P Y+P LVPP+ W +GGY
Sbjct: 213 IVRQSEGAHNTNIYVVATKETLDWLATENSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSG 272
Query: 462 PSYVMRT--HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+R G+R+ L+SV M KV+ +++ + +T W +N +V V+ S+W +
Sbjct: 273 RVRNLRLIKTGNRQYLMDLESVD---MPKVYHSINAMQNTAWSINHRVYEVMASLWDNQS 329
Query: 520 NIAGLVDRNDVLIPEKPL-------SEDMT-----EVQKWKWSVRKAKKINQERHSQRCD 567
+A + +D+ +PEKP+ EDM+ E +WK + N S+R
Sbjct: 330 TLACIPQADDMPLPEKPMWLAPEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLA 389
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKS 626
L VA R KDEE FY+PH +DFRGR Y + LN D G+L+FA P+ +
Sbjct: 390 FSRMLGVATRFKDEEEFYFPHQMDFRGRVYAVPLFLNPQGDDASHGLLQFANSVPITNEE 449
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
G WL IH A L+ GV+K S + R+ +V + EI SAENP + +R+WLTAE P+Q L
Sbjct: 450 GADWLAIHGAGLW--GVDKCSMNERVEWVMANQREILASAENPYD-NRFWLTAEKPWQAL 506
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
A C + + + SHLP+ DG+CNGLQ+++A+ + + AAVNLV +KP D+
Sbjct: 507 AFCFEWQGYV--AEGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPSDKPNDI 564
Query: 747 YSEIA-----------------VRVHEIMKRDSNKDPS---KHPQALLAKILIDQVDRKL 786
Y+ +A E+ +++ ++ + + ++ K L + RK+
Sbjct: 565 YATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVVESDGSMARKWLAYGITRKV 624
Query: 787 VKQTVMTSVYGVTFVGAREQI 807
K+ VMT YG + G REQ+
Sbjct: 625 TKRPVMTLAYGASEFGFREQV 645
>gi|146421878|ref|XP_001486882.1| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC
6260]
Length = 1144
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 169/486 (34%), Positives = 240/486 (49%), Gaps = 38/486 (7%)
Query: 364 KLGSRLVELLIET-------AYVQHPVNPADYSPPDVRPAFRHRFKTIL---KHPGQKTT 413
+L S LV+L IE Y P N + D + AF IL K P +
Sbjct: 347 RLFSHLVKLAIENCTIPPQLVYKSFPKN--THYLLDSKGAFSKNQAFILLMIKSPDSTSY 404
Query: 414 KRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
++ G + P ++ + +PMLVP + W ++GGYL ++ + +
Sbjct: 405 RQVGTIVPHPFLVYDFKGRQEMPETTSILLPMLVPARNWTSPDEGGYLGDLQPILHSDFT 464
Query: 472 RKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLES-IWVSGG--NIAGLVDR 527
K + L+ ++ F+ LD LGS W VN +L V S + S G NI V
Sbjct: 465 EKSLQYLRLANRTSQLQSTFKGLDYLGSQAWAVNLSMLEVFSSAMQRSDGMLNIVPPVSS 524
Query: 528 NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ-------RCDTELKLSVARRM-K 579
+V IP P +D ++ +++ KK ++R + R + E L AR
Sbjct: 525 MEVNIPPNPSRKDFGSETEYYIALKNVKKEREKRLQEFHNLKGLRVELETLLKAARAFGA 584
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
+ + Y PH LDFR RAYPM L+H SD+ R +L F +PLG G +WL+ LA +
Sbjct: 585 NGDMVYLPHQLDFRSRAYPMVSVLSHYQSDLVRSLLTFWHSKPLGPDGDKWLRYQLAAHY 644
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-- 697
G++KLS DGRL FV +++ I A+NP G WW AE P+Q LA C ++ K
Sbjct: 645 --GMDKLSLDGRLKFVADNMETILKCAQNPF-GEVWWQKAEKPWQTLAMCFEFAKLQKYI 701
Query: 698 --SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
S H LPI DGSCNGLQHYAALG + L A +VN++ EK V ++ V
Sbjct: 702 AEGKSVHDYPCRLPISLDGSCNGLQHYAALGADKLGAQSVNVMPSEKDNGVRQDVYSAVL 761
Query: 756 EIMKRDSNKDPSKHPQ--ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
EI+ + K + P + LAK L+ RKL+KQTVMTSVYGVT GA QI+ R+ +
Sbjct: 762 EIVTQKVLKSEADEPNITSSLAKHLL---SRKLIKQTVMTSVYGVTAFGAAAQIRNRISD 818
Query: 814 KGHITD 819
+ D
Sbjct: 819 VIDLAD 824
>gi|190344480|gb|EDK36161.2| hypothetical protein PGUG_00259 [Meyerozyma guilliermondii ATCC
6260]
Length = 1144
Score = 232 bits (591), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 170/488 (34%), Positives = 244/488 (50%), Gaps = 40/488 (8%)
Query: 357 WGRDTQAKLGSRLVELLIET-------AYVQHPVNPADYSPPDVRPAFRHRFKTIL---K 406
+ ++ +L S LV+L IE Y P N + D + AF IL K
Sbjct: 340 FTKEDGIRLFSHLVKLAIENCTIPPQLVYKSFPKN--THYLLDSKGAFSKNQAFILSMIK 397
Query: 407 HPGQKTTKRYGVVECDPLVL---EGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
P + ++ G + P ++ +G + I +PMLVP + W ++GGYL
Sbjct: 398 SPDSTSYRQVGTIVPHPFLVYDFKGRQEMPETTSI-LLPMLVPARNWTSPDEGGYLGDLQ 456
Query: 464 YVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLES-IWVSGG-- 519
++ + + K + L+ ++ F+ LD LGS W VN +L V S + S G
Sbjct: 457 PILHSDFTEKSLQYLRLANRTSQLQSTFKGLDYLGSQAWAVNLSMLEVFSSAMQRSDGML 516
Query: 520 NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ-------RCDTELKL 572
NI V +V IP P +D ++ +++ KK ++R + R + E L
Sbjct: 517 NIVPPVSSMEVNIPPNPSRKDFGSETEYYIALKNVKKEREKRLQEFHNLKGLRVELETLL 576
Query: 573 SVARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
AR + + Y PH LDFR RAYPM L+H SD+ R +L F +PLG G +WL
Sbjct: 577 KAARAFGANGDMVYLPHQLDFRSRAYPMVSVLSHYQSDLVRSLLTFWHSKPLGPDGDKWL 636
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
+ LA + G++KLS DGRL FV +++ I A+NP G WW AE P+Q LA C
Sbjct: 637 RYQLAAHY--GMDKLSLDGRLKFVADNMETILKCAQNPF-GEVWWQKAEKPWQTLAMCFE 693
Query: 692 LSEALK----SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
++ K S H LPI DGSCNGLQHYAALG + L A +VN++ EK V
Sbjct: 694 FAKLQKYIAEGKSVHDYPCRLPISLDGSCNGLQHYAALGADKLGAQSVNVMPSEKDNGVR 753
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQ--ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGARE 805
++ V EI+ + K + P + LAK L+ RKL+KQTVMTSVYGVT GA
Sbjct: 754 QDVYSAVLEIVTQKVLKSEADEPNITSSLAKHLL---SRKLIKQTVMTSVYGVTAFGAAA 810
Query: 806 QIKRRLEE 813
QI+ R+ +
Sbjct: 811 QIRNRISD 818
>gi|339245165|ref|XP_003378508.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
gi|316972574|gb|EFV56247.1| DNA-directed RNA polymerase domain protein [Trichinella spiralis]
Length = 1230
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/297 (42%), Positives = 171/297 (57%), Gaps = 33/297 (11%)
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
KK+ E +S C KL++A +D+ ++PHNLDFRGR YP PH NH+ DVCRG+
Sbjct: 727 KKLKNENYSLWCSLLYKLTIANHFRDD-IIWFPHNLDFRGRVYPCPPHFNHMGDDVCRGI 785
Query: 615 ------------------------LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
L FA+G+PLG+ GL WLK+HL NL +G ++ +
Sbjct: 786 WLIFYLLILLQFSHYSRLFKIEGLLLFAKGQPLGEKGLDWLKVHLINL-TGIMKHETFTA 844
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS-SSPHSVISHLP 709
RLAF + + +I DSA P+ G RWW +E+P+Q LA C+ ++ A+ + SH P
Sbjct: 845 RLAFANSIIEDILDSAAKPLTGRRWWTLSEEPWQTLACCMEIAAAINCPDGCENFQSHFP 904
Query: 710 IHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769
+HQDGSCNGLQHYAALGR+ A VNL ++P DVYS +A V + D+
Sbjct: 905 VHQDGSCNGLQHYAALGRDREGAFQVNLCPDDRPQDVYSGVAQLVEKKRVEDAKNGNE-- 962
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
+A L V RK+VKQTVMT+VYGVT GAR+QI ++L+ + DD Q A+
Sbjct: 963 ----IAIQLDGIVKRKVVKQTVMTTVYGVTQFGARQQISKQLKALDSLPDDVQFQAS 1015
>gi|84998152|ref|XP_953797.1| DNA-directed RNA polymerase (mitochondrial precursor) [Theileria
annulata]
gi|65304794|emb|CAI73119.1| DNA-directed RNA polymerase (mitochondrial precursor), putative
[Theileria annulata]
Length = 1222
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 146/462 (31%), Positives = 245/462 (53%), Gaps = 51/462 (11%)
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
AFRH +L G KT +GV+E + +L+ D AK ++ + +PM+ PK+W
Sbjct: 606 AFRH----VLLRQGVKT---FGVLEMRESCMLKLRDFVAKSLVSLAALPMVCKPKRWINA 658
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG + L +R GS+ L V + VF+ ++ W +N+Q+L++++
Sbjct: 659 TTGGSILLKHNFIR--GSK-----LNEVKVYDLGNVFDIVNKFSQVPWIINRQMLNLIKH 711
Query: 514 IWVSGGNIAGLVDRNDVLIPEK-PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
I S + D+ I + P++ ++ S+ ++ S+ ++
Sbjct: 712 ICSS---------QTDMQIKQHLPVNTTTNIMENINTSISNITSLSSNELSELSLFLRRI 762
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+A +E+ Y P N+DFRGR YP+ P+LNH++ D+CR +L F+E R LG GL WLK
Sbjct: 763 KIADAFANEKRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSEKRKLGNRGLFWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACI 690
+H +N++ G +K+S + R+ +V+ H+ I + ++P +W+ A+ PFQ A+C+
Sbjct: 823 VHCSNMY--GNDKISFEDRVKWVDEHIAIITELVKSPFKDFNQNFWVKADKPFQFFASCV 880
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L A++S++P ++HLPI QDG+CNGLQHYAALG + A VNLV E+P D+Y+ I
Sbjct: 881 ELVRAIESNNPDEYMTHLPIQQDGTCNGLQHYAALGLDERGAKYVNLVNSEQPQDLYTHI 940
Query: 751 AVRVHEIMKRDSNKDPSKHPQALL-----------------AKILIDQ--VDRKLVKQTV 791
+ + + D N S L ++I ++ + RK++KQTV
Sbjct: 941 LQLIIQKVYNDLNYTNSTVSNNTLVTSGNGKLSNVESNKKYSEICVNNNILCRKVIKQTV 1000
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAA 831
MT YGVT +GA +Q++ +L++ I+ +L A Y A
Sbjct: 1001 MTICYGVTRIGAIDQVESKLKDIKKISYLSPSELRGLAAYLA 1042
>gi|448106266|ref|XP_004200703.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|448109383|ref|XP_004201334.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382125|emb|CCE80962.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
gi|359382890|emb|CCE80197.1| Piso0_003299 [Millerozyma farinosa CBS 7064]
Length = 1253
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/448 (34%), Positives = 235/448 (52%), Gaps = 39/448 (8%)
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-----SAKHMLIPYVPMLVP 446
D PAF I G+ K+ G + P + E S+K + Y+PML
Sbjct: 468 DGYPAF---LSGISIQNGKSKFKKSGAMAIHPYLAEEFKTYSALYSSKSV---YLPMLSF 521
Query: 447 PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL----KSVTGNCMKKVFEALDTLGSTKWR 502
PK W ++GGYL + + S +Q AL ++ + F+ LD L ST W
Sbjct: 522 PKAWISPSEGGYL---NDLKPLVSSEEQSTALLYLKEADRSGSLLPAFKCLDILSSTPWA 578
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-----EKPLSEDMTEVQKWKWSVRKAKKI 557
+N+ VL+V+ + + + D LIP E P ++ + + + +V K K+
Sbjct: 579 INQAVLNVINQVANIKEGFLKIPPKVDHLIPMVAAKEFPEKQNYSCEKDYLRAVYKYKQD 638
Query: 558 N----QERHSQRC---DTELKLSVARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
Q+ H+ +C + E+ L +A K+ + + PHN+DFRGR YPM L+H SD
Sbjct: 639 KKQNLQDYHASKCQRMEFEIFLRLANAFGKNGDIMFIPHNMDFRGRVYPMVSFLSHYQSD 698
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+ R +L F E +PLG+SG RWLK HLA LF G +K + + R+ F++ + + DS + P
Sbjct: 699 IVRSLLMFWEPKPLGESGFRWLKYHLAGLF--GKDKWTLEERVRFIDESISLVVDSGKKP 756
Query: 670 INGSRWWLTAEDPFQCLAACINLSEAL----KSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
++G WW A+ P+Q L+ C+ ++ L K + + +PIH DGSCNGLQHYAAL
Sbjct: 757 LDGLMWWKKADKPWQALSLCMEITNVLSYIEKGHNIEDYLCRIPIHLDGSCNGLQHYAAL 816
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
G + A +VN++ E ++++ +V ++ + N K L A++L + RK
Sbjct: 817 GADKEAAESVNVIPSEHQGSKFNDVYTQVLNLVVEEINHRVQK--GELYAQLLSKILSRK 874
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEE 813
L+KQTVMTSVYGVT GA EQI R +E
Sbjct: 875 LIKQTVMTSVYGVTRHGAMEQINERFKE 902
>gi|150865890|ref|XP_001385284.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
gi|149387146|gb|ABN67255.2| mitohcondrial RNA polymerase [Scheffersomyces stipitis CBS 6054]
Length = 1202
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 206/389 (52%), Gaps = 38/389 (9%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL-KSVTGNCMKKVFEALDTLGS 498
Y PML PPK W GGYL ++ + + + + ++ + + +EAL+ LGS
Sbjct: 478 YFPMLYPPKPWVSPTNGGYLLDLKPIITSSDIKTSMKYIDRANSSGQLNSTYEALNYLGS 537
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
W +N +VL V + +D + IP P + + ++ ++ K K+I
Sbjct: 538 NAWAINSEVLQVFNEVMK--------LDEGFLKIP--PTLKVLKTEEQEDYNDLKTKRIL 587
Query: 559 QERHSQRCDTELKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
+ V D G + PHN+DFRGRAYPM L H D RG++
Sbjct: 588 FNL----------VHVVANSYDVNGDMLFLPHNVDFRGRAYPMASLLTHYQEDAVRGIMM 637
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
F +PLG +GL WLK LA +F G +KLS + R+ FV+ +L I +SAENP++ + WW
Sbjct: 638 FWHSQPLGSTGLNWLKYQLAGVF--GKDKLSFENRIQFVDENLESIRESAENPLSKNSWW 695
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVI----SHLPIHQDGSCNGLQHYAALGRNTLEA 732
A+ P+Q LA CI L+ A + I S +P+HQDGSCNGLQHYAALG +T
Sbjct: 696 KEADKPWQTLALCIELNRAYNYVEQGNKIEEFRSRMPVHQDGSCNGLQHYAALGADTAGG 755
Query: 733 AAVNLVAGEKP----ADVYSEIAVRVHEIMKRD----SNKDPSKHPQALLAKILIDQVDR 784
AVN+V ++ DVYS + V E +++D N D S + L+ I + ++R
Sbjct: 756 EAVNIVPNKENLSQRGDVYSSVLQIVIEKVQKDLTGEGNSD-SSNSNFELSSIAMQILNR 814
Query: 785 KLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
KL+KQTVMT+VYGVT G QI R+++
Sbjct: 815 KLIKQTVMTTVYGVTTYGGASQIYLRIKD 843
>gi|395750053|ref|XP_003779053.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial [Pongo abelii]
Length = 1169
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 151/503 (30%), Positives = 253/503 (50%), Gaps = 43/503 (8%)
Query: 229 EAIEREQKMQRTKKQKAAYA------PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
+A+ R + + + ++A Y P + LL +V +++ + L G +
Sbjct: 443 KALCRALRDTKNRLERAVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLAR 502
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKII---ADTEEVLSKEKELLRKRVNSLIKS 339
+A + Q R+ ++ +N+ RK + DTE V +
Sbjct: 503 ELSARTFSRHVVQRQRLSGQVQALQNHYRKYLCLLACDTE-------------VPNPCLP 549
Query: 340 KRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRH 399
++ EA K +PW Q +LG L E+L++ + ++ +P
Sbjct: 550 RQYWEALGAPKALREQPWPLPVQMELGKLLAEMLVQATQMPCSLD---------KPHRSS 600
Query: 400 RFKTILKHPGQ-KTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNK 455
R +L H + ++ G+++ P ++ L+++A+ LI VPML PP W +
Sbjct: 601 RLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLIFEAVDVPMLCPPLPWTSPHS 660
Query: 456 GGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
G +L P+ +MRT G+ + QE L++ + +AL LG+ WRVN +VL ++ +
Sbjct: 661 GAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQL 720
Query: 515 WVSGGNIAGLVDRNDVLIPEK-----PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTE 569
+ + G V P+ P S + + + +K+ +E HS R +
Sbjct: 721 FQAKGCPQLGVPAPPSEAPQPAEAHLPHSAAPARKAEVRRGLAHCQKVAREMHSLRAEAL 780
Query: 570 LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+LS+A+ ++D F+ PHN+DFRGR YP PH NHL SDV R +LEFA+GRPLG GL
Sbjct: 781 YRLSLAQHLRDRV-FWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPRGLD 839
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIHL NL +G ++ RLAF E + +I DSA+ P+ G +WW+ AE+P+Q LA C
Sbjct: 840 WLKIHLVNL-TGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACC 898
Query: 690 INLSEALKSSSPHSVISHLPIHQ 712
+ +++A+++S P + +SHLP+HQ
Sbjct: 899 MEVAKAVRASDPAAYVSHLPVHQ 921
>gi|260943574|ref|XP_002616085.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
gi|238849734|gb|EEQ39198.1| hypothetical protein CLUG_03326 [Clavispora lusitaniae ATCC 42720]
Length = 995
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 150/420 (35%), Positives = 217/420 (51%), Gaps = 29/420 (6%)
Query: 414 KRYGVVECDPLVLEGLD------RSAKHMLIPYVPMLVPPKKWKGYNKGGYL--FLPSYV 465
KR GVV+ P + + + S ++L PML PPK+W GG+ +P
Sbjct: 464 KRVGVVKVHPFLPKQFETCLELFSSGSYLL----PMLHPPKEWVSPENGGFFDDLVPLVK 519
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG---NIA 522
S A TG + ++E+L+ LGS W +N +L V G +I
Sbjct: 520 SIDQESTSFYMAQAHRTGQ-LDSIYESLNALGSVSWAINPSMLGVFNDAMSDKGGFMHIP 578
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQKW------KWSVRKAK-KINQERHSQRCDTELKLSVA 575
G+ + + EKP D + + S R+A+ K +E HS R EL ++A
Sbjct: 579 GIKAPDSCEMLEKPQRCDFKAEKDYLSALARHRSTREARLKKKKEAHSLRVYYELVNTLA 638
Query: 576 RRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
R + K+ + +YP N+DFRGR YP L+H S D+ R +L F E +PLG G WL+
Sbjct: 639 RSLEKNGDSIFYPQNIDFRGRVYPCVSFLSHHSEDLVRSLLMFWEAKPLGPKGYDWLQYQ 698
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694
LANL S LS + AFV N+ I +SA++P++ WW + P+QCLA C+ L
Sbjct: 699 LANLHSDHF--LSMEKSKAFVANNKEAIIESAKSPMSPQSWWRKGDSPWQCLAMCMELKN 756
Query: 695 ALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+ +S +PIH DG+CNGLQHYAALG + A +VNL+ K DVY + R
Sbjct: 757 VWEYEGKKEEYLSRIPIHMDGTCNGLQHYAALGADKDAAVSVNLIPDTKKHDVYVTVLNR 816
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
V E + S+ + A A+ ++ + RK+VKQTVMT+VYGVT GA QI+ +L+E
Sbjct: 817 VRE--RVVSDLESVSDETAETARQVLPLLSRKIVKQTVMTTVYGVTLYGAFRQIREKLDE 874
>gi|71033709|ref|XP_766496.1| DNA-directed RNA polymerase [Theileria parva strain Muguga]
gi|68353453|gb|EAN34213.1| DNA-directed RNA polymerase, putative [Theileria parva]
Length = 1225
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 244/463 (52%), Gaps = 52/463 (11%)
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
AFRH +L G KT +GV+E + +L+ D AK ++ + +PM+ PKKW
Sbjct: 608 AFRH----VLLRQGVKT---FGVLEMRESCMLQLRDFVAKSLVSLAALPMVCRPKKWINA 660
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG + L +R GS+ L V ++ VF+ ++ W +N Q+L +++
Sbjct: 661 TTGGSILLKHNFIR--GSK-----LNEVKVYNLENVFDIVNKFSQVPWIINSQMLKLIKH 713
Query: 514 IWVSGGNIAGLVDRNDVLIPEK-PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
I S + D+ I + P++ ++ ++ ++ ++ S+ ++
Sbjct: 714 ICNS---------QTDMPIKQHLPVNTNINLMENINTTISNITSLSSNELSELSLFLRRI 764
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+A +E Y P N+DFRGR YP+ P+LNH++ D+CR +L F+E R LG GL WLK
Sbjct: 765 KIADAFANERRLYMPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSEKRKLGNRGLFWLK 824
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACI 690
+H +N++ G +K+S + R+ +V+ H+ I + ++P +W+ A+ PFQ A+C+
Sbjct: 825 VHSSNMY--GNDKISFEDRVKWVDEHISIITELVKSPFKDFNQNFWVKADKPFQFFASCV 882
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
L A++S++P ++HLPI QDG+CNGLQHYAALG + A VNLV E P D+Y+ I
Sbjct: 883 ELVRAIESNNPEDYMTHLPIQQDGTCNGLQHYAALGLDEKGAKYVNLVDCEHPQDLYTHI 942
Query: 751 ------------------AVRVHEIMKRDSNKDPSKHPQALLAKILIDQ--VDRKLVKQT 790
V + ++ + K + ++I ++ + RK++KQT
Sbjct: 943 LQLIIQKVYNDLNYTSGSGVSNNSLVTTGNGKLSNVESNKKYSEICVNNNILCRKVIKQT 1002
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAA 831
VMT YGVT +GA +Q++ +L++ I+ +L A Y A
Sbjct: 1003 VMTICYGVTRIGAIDQVESKLKDIKKISYLSPSELRGLAAYLA 1045
>gi|345893809|ref|ZP_08844601.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
gi|345045845|gb|EGW49744.1| hypothetical protein HMPREF1022_03261 [Desulfovibrio sp.
6_1_46AFAA]
Length = 898
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 156/499 (31%), Positives = 245/499 (49%), Gaps = 58/499 (11%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW R LG +++EL++E+ + H V RP R + G T
Sbjct: 203 RPWSRPDCLHLGQKMLELIMESTGIFHLVR---------RPLPGRRISSAADSSGWVYT- 252
Query: 415 RYGVVECDPLVLEGLDR---SAKHMLIPYVPMLVPPKKWKGYNKGGYLFL----PSYVMR 467
+E P + L R +A M Y+P +VPPK W+G GGY L P +++
Sbjct: 253 ----LELSPSCRDWLQRHRETAGLMYPDYLPTIVPPKPWRGAGGGGYYSLDDTRPLSLVK 308
Query: 468 THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW-VSGGNIAGLVD 526
Q++ + + +K V A++ + +T W +N VL V +W V+GG++AGL
Sbjct: 309 LGDMDYQRDLDRRIQNGELKDVLMAVNAMQNTAWSINAPVLEVARRLWDVTGGDVAGLPK 368
Query: 527 RNDVLIPEKPL-SEDMT------------------EVQKWKWSVRKAKKINQERHSQRCD 567
R+ +P P+ D+T E+ WK + + + N +S+R
Sbjct: 369 RDGWRLPLCPVCGADITDSATAYVKHDCLDTLAPEELADWKRAALRIHEKNVANNSRRLT 428
Query: 568 TELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-S 626
L++A R + E FYYP+ LDFRGR Y + +LN +D+ +G+L F+EG+PLG
Sbjct: 429 VAKILTLAERFQREHHFYYPYQLDFRGRIYAVPTYLNPQGTDLAKGLLRFSEGKPLGDMK 488
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCL 686
+RWL IH +N + G +K+S D R ++V H I A +P+ WW+ A+ PF L
Sbjct: 489 AVRWLAIHGSNTW--GNDKVSLDERHSWVLEHQEHILAQAADPL-ADGWWMEADAPFCFL 545
Query: 687 AACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
A C + ++ +S LPI DG+CNGLQ Y+ + R+ + AVNL EKP D+
Sbjct: 546 AFCFEWAGYVREGL--GFLSRLPIALDGTCNGLQIYSLMLRDAVGGHAVNLTPTEKPQDI 603
Query: 747 YSEIAVRVHEIMKRDSN-KDPSK---------HPQALLAKILID-QVDRKLVKQTVMTSV 795
Y +A +V ++K D++ P++ + AL A+ L+ +DRK K+ VM
Sbjct: 604 YGIVAEKVRAVLKHDADHGGPAQGRKKDEGPLYDSALCARFLLGLGIDRKTTKRQVMVLP 663
Query: 796 YGVTFVGAREQIKRRLEEK 814
YG T R+ K L K
Sbjct: 664 YGGTNESCRKYTKEWLTGK 682
>gi|207345728|gb|EDZ72452.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 236
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 149/219 (68%), Gaps = 11/219 (5%)
Query: 604 NHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
NHL +D+ RG+L F G+ LG SGL+WLKIHL+NLF G +KL R+AF E+HL +I
Sbjct: 1 NHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPLKDRVAFTESHLQDIK 58
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
DSAENP+ G RWW TA+ P+Q LA C L+E +K +P ISH P+HQDG+CNGLQHYA
Sbjct: 59 DSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQPVHQDGTCNGLQHYA 118
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD 783
ALG + A VNLV +KP DVY+ +A V + ++ + K AKIL D++
Sbjct: 119 ALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDEN------AKILKDKIT 172
Query: 784 RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQ 822
RK+VKQTVMT+VYGVT+VGA QI ++L I DDR+
Sbjct: 173 RKVVKQTVMTNVYGVTYVGATFQIAKQLSP---IFDDRK 208
>gi|224102445|ref|XP_002334173.1| predicted protein [Populus trichocarpa]
gi|222869927|gb|EEF07058.1| predicted protein [Populus trichocarpa]
Length = 160
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/161 (64%), Positives = 139/161 (86%), Gaps = 5/161 (3%)
Query: 140 RRIFVQDPPWFSSIFLKGLYK----RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVD 195
+R+F++D PW S+++ KG +K ++KL E ++++KRK+NLLRRRQ+++ETEAWERM +
Sbjct: 1 KRVFIRDSPWISALYWKGTHKIANKKVKL-ELKDIEKRKYNLLRRRQIREETEAWERMAE 59
Query: 196 EYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLP 255
EY L +M E++LAPNLP++K LFLGWF PL EAIEREQK++++KKQK+A++P+IELLP
Sbjct: 60 EYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLP 119
Query: 256 ADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQE 296
ADK+AVIVMHKMMGLVM GHED CV+VVQAAV IG+AIEQE
Sbjct: 120 ADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQE 160
>gi|443730014|gb|ELU15709.1| hypothetical protein CAPTEDRAFT_156688 [Capitella teleta]
Length = 601
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/403 (34%), Positives = 215/403 (53%), Gaps = 31/403 (7%)
Query: 425 VLEGLDRSAKHMLIPYVPM----LVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
VL L R+AK + + P+ ++PP W + G +F ++R H +++ L S
Sbjct: 5 VLCMLFRTAKLKQVTFSPIELPSVIPPVPWTSHKHGADIFSTVELIR-HADDVRRDTLLS 63
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
+ +AL+T+G+ W +NK+VL V+ ++ +GG+ V + IP P
Sbjct: 64 TPLQKVLPTLDALNTVGACPWIINKKVLDVMVEVFKTGGSEQLDVPCSIHDIPLPPKIHS 123
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM- 599
W + + S D +S R +K ++ P R + +
Sbjct: 124 WCPAAVWHRLLLEG--------SIAVDFSSNVSKCRNVKQQKEKNSPVEKSLRSDVWTLL 175
Query: 600 --------HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG- 650
P + SD+ RG++ F +G+PLG SGL WLKIH NL G++K S +
Sbjct: 176 TSMSLKSTFPAVEVPGSDLSRGIMVFGQGKPLGASGLDWLKIHCINL--TGLKKRSPNSE 233
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
RLA+ + +I DSAE P++G WW A++P+Q LA C+ ++ A +S P + +SHLP+
Sbjct: 234 RLAYANEVMDDILDSAERPLSGRGWWKDADEPWQTLATCMEIAAASQSPDPSAFVSHLPV 293
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
HQDGSCNGLQHYAALGR+ A ++NL + P DVYS++ V + D+ K
Sbjct: 294 HQDGSCNGLQHYAALGRDVEGAKSINLHPMDTPRDVYSDVVELVESVRADDAMKGNE--- 350
Query: 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+AK+L + RK++KQT+MT+VYGVT GAR+QI+ +LE+
Sbjct: 351 ---IAKVLEGHIQRKVIKQTIMTTVYGVTIYGARKQIQGQLED 390
>gi|254504157|ref|ZP_05116308.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|254505310|ref|ZP_05117458.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222436154|gb|EEE42836.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
gi|222440228|gb|EEE46907.1| DNA-dependent RNA polymerase domain protein [Labrenzia alexandrii
DFL-11]
Length = 573
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 199/371 (53%), Gaps = 23/371 (6%)
Query: 456 GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
GGY + +MR + +++ + ++ L+ LG+T R+N++V +VL W
Sbjct: 10 GGYYMIQEDIMRCGIFKHSGSNPNAISDDALR----TLNALGATPKRINQRVFAVLNEAW 65
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH-------SQRCDT 568
++G IAGL +D ++P + E+ ++ K + S KA + +E H S R
Sbjct: 66 MAGDQIAGLPSAHDPVVPGRKEDEEWEDMSKDEQSEHKASR--EEAHMEIVRLGSSRKQF 123
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
KLSVAR M D FY P LDFRGR YPM + DVC+G++EFA G+PLG GL
Sbjct: 124 LDKLSVAREMADHPEFYEPFFLDFRGRFYPMCETFHSQGDDVCKGLIEFARGKPLGSRGL 183
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WL + AN F G +KL D R + +HL +I + A +P++GSRWW A++P+ LA
Sbjct: 184 YWLAVRAANCF--GEDKLPLDERYQWTLDHLDQIIECAMDPLDGSRWWTQADEPWGFLAT 241
Query: 689 CINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
C L EA +SHL I DGSCNGLQH +A+ ++ + A A NL+A + D+Y
Sbjct: 242 CFELDEATALGDRSVEYVSHLAIPLDGSCNGLQHLSAMSKDPVGAKATNLMARAQREDIY 301
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV-DRKLVKQTVMTSVYGVTFVGAREQ 806
E+A I+ D Q L +L D RK+VK+ VMT+ YGVT G
Sbjct: 302 LEVAASARRILASDITNGVEWSAQWL--AVLEDTAKGRKVVKRAVMTTPYGVTERG---- 355
Query: 807 IKRRLEEKGHI 817
I +L + GH+
Sbjct: 356 IATQLYKDGHV 366
>gi|189427200|ref|YP_001949750.1| gp1 [Salmonella phage phiSG-JL2]
gi|189085853|gb|ACD75668.1| gp1 [Salmonella phage phiSG-JL2]
Length = 884
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 179/631 (28%), Positives = 302/631 (47%), Gaps = 86/631 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ AYAP ++LL + A I +
Sbjct: 75 LATLLPKLTARIVEWL---------EEYASKKGRKPVAYAP-LQLLKPEASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNIAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGVYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVAHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSK------------------HPQALLAK 776
NL+ E D+Y +A +V+EI+K+D+ N P++ L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L V R + K++VMT YG G R+Q+
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQV 651
>gi|261334540|emb|CBH17534.1| mitochondrial DNA-directed RNA polymerase,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1317
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 201/392 (51%), Gaps = 44/392 (11%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 732 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 783
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--- 559
I G + R D+ + +D + + + R+ ++ Q
Sbjct: 784 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 843
Query: 560 -----ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +
Sbjct: 844 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 903
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +
Sbjct: 904 LEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 961
Query: 675 WWLTAEDPFQCLAACINLSEALKSS-SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A
Sbjct: 962 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 1021
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQVDRKL 786
VNLV E+PAD Y+ I + +K D+ +D HP A + L D + RK
Sbjct: 1022 LVNLVPSERPADAYTGILKEMMSSIKADAERD---HPVA--QRCLGTGKGQDRDHIKRKT 1076
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRL--EEKGH 816
+K+ +MT VYGVT G EQI L + K H
Sbjct: 1077 IKRPIMTQVYGVTGYGMSEQILDELVKQNKNH 1108
>gi|426347255|ref|XP_004041272.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase,
mitochondrial-like [Gorilla gorilla gorilla]
Length = 943
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 149/221 (67%), Gaps = 7/221 (3%)
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
R R H NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ L
Sbjct: 516 RQRXXXXXXHFNHLGSDVARALLEFAQGRPLGPRGLDWLKIHLVNL-TGLKKREPLRKCL 574
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
AF E + +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQ
Sbjct: 575 AFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQ 634
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQA 772
DGSCNGLQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ +
Sbjct: 635 DGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGTR----- 689
Query: 773 LLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 690 -VAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 729
>gi|71755477|ref|XP_828653.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei
TREU927]
gi|70834039|gb|EAN79541.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1274
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/381 (35%), Positives = 197/381 (51%), Gaps = 42/381 (11%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 740
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--- 559
I G + R D+ + +D + + + R+ ++ Q
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 800
Query: 560 -----ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +
Sbjct: 801 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 860
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +
Sbjct: 861 LEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 918
Query: 675 WWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A
Sbjct: 919 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 978
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQVDRKL 786
VNLV E+PAD Y+ I + +K D+ +D HP A + L D + RK
Sbjct: 979 LVNLVPSERPADAYTGILKEMMSSIKADAERD---HPVA--QRCLGTGKGQDRDHIKRKT 1033
Query: 787 VKQTVMTSVYGVTFVGAREQI 807
+K+ +MT VYGVT G EQI
Sbjct: 1034 IKRPIMTQVYGVTGYGMSEQI 1054
>gi|17570792|ref|NP_523301.1| RNA polymerase [Enterobacteria phage T3]
gi|133452|sp|P07659.1|RPOL_BPT3 RecName: Full=DNA-directed RNA polymerase
gi|15562|emb|CAA26719.1| unnamed protein product [Enterobacteria phage T3]
gi|15683|emb|CAA35121.1| 1 [Enterobacteria phage T3]
gi|17384276|emb|CAC86264.1| RNA polymerase [Enterobacteria phage T3]
Length = 884
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 179/631 (28%), Positives = 303/631 (48%), Gaps = 86/631 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ +AYAP ++LL + A I +
Sbjct: 75 LATLLPKLTTRIVEWL---------EEYASKKGRKPSAYAP-LQLLKPEASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVTHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSK------------------HPQALLAK 776
NL+ E D+Y +A +V+EI+K+D+ N P++ L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L V R + K++VMT YG G R+Q+
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQV 651
>gi|194694606|gb|ACF81387.1| unknown [Zea mays]
Length = 323
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/145 (70%), Positives = 126/145 (86%)
Query: 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+NL+EAL+SSSP + ISH+P+HQDGSCNGLQHYAALG++ L A AVNLVAGEKPADVY+
Sbjct: 1 MNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADVYTG 60
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
IA RV EIM+ D+ KDPS P A A++++DQVDRKLVKQTVMTSVYGVT++GAREQI+R
Sbjct: 61 IANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRR 120
Query: 810 RLEEKGHITDDRQLFAAACYAAKVS 834
RL+E+G I +D +LF A+CYAAKV+
Sbjct: 121 RLKERGVIPNDSELFGASCYAAKVT 145
>gi|403221340|dbj|BAM39473.1| DNA-directed RNA polymerase precursor [Theileria orientalis strain
Shintoku]
Length = 1221
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 236/446 (52%), Gaps = 55/446 (12%)
Query: 396 AFRHRFKTILKHPGQKTTKRYGVVEC-DPLVLEGLDRSAKHML-IPYVPMLVPPKKWKGY 453
AFRH +L G KT +GV+E + +L+ D AK +L + +PM+ PKKW
Sbjct: 603 AFRH----VLLRQGIKT---FGVLEMRESCMLQLRDFVAKSLLSLAALPMVCRPKKWINA 655
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
GG L L +R GS+ + + + G VF+ ++ W +N+ +L ++++
Sbjct: 656 TTGGSLLLKHNFIR--GSKLNEVKVYDLEG-----VFDIVNRFSQVPWVINRDMLQIIKA 708
Query: 514 IWVSGGNIAGLVDRNDVLIPEK---PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
I + + IP K P++ + S K+N ++ S+
Sbjct: 709 I-----------NNDPNSIPMKQFVPITGNNGISGNNGVSGGADTKLNSDQLSELSLFLR 757
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
++ +A +E+ Y P N+DFRGR YP+ P+LNH++ D+CR +L F+E R +G+ GL W
Sbjct: 758 RIKIADSFVNEKKLYVPLNIDFRGRMYPLSPYLNHMNDDLCRSLLLFSERRRMGERGLFW 817
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAA 688
LKIH++N+F G +K S + R+ +V+ H I D NP +W A+ PFQ AA
Sbjct: 818 LKIHVSNMF--GNDKKSFEERIRWVDEHYAIIADLTRNPWGDFNQNFWAKADKPFQFFAA 875
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ L A++S P + +++PI QDG+CNGLQHYAALG + A VN+V +P D+YS
Sbjct: 876 SLELVRAVESGDPANYRTNIPIQQDGTCNGLQHYAALGLDEEGARYVNMVDAAEPQDLYS 935
Query: 749 EIAVRVHEIMKRDSNK---DPSKHP----------QALL------AKILIDQ--VDRKLV 787
I V + + +D N DP +A L A++ I+ + RK+V
Sbjct: 936 HILQVVIKKVYQDLNSAAGDPGTDTGHAGKRKTDGKATLESNRRHAELCINNNLLSRKVV 995
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEE 813
KQTVMT YGVT VGA +Q++ +L++
Sbjct: 996 KQTVMTICYGVTRVGAIDQVEAKLKD 1021
>gi|26988990|ref|NP_744415.1| DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
gi|24983810|gb|AAN67879.1|AE016420_1 DNA-directed RNA polymerase, bacteriophage and mitochondrial type
[Pseudomonas putida KT2440]
Length = 852
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 176/582 (30%), Positives = 280/582 (48%), Gaps = 84/582 (14%)
Query: 256 ADKVAVIVM-HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI 314
AD +A + + H + G+ + R +Q V +V I ++E E+R+ +K +RKK
Sbjct: 97 ADVLAYLTLKHTLAGI----SQPRTLQHV--SVSIAQSVEDEMRLSGIRDK----ERKKY 146
Query: 315 IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLI 374
++++ + + +R + I + RV A N W + + +G++L+ELL+
Sbjct: 147 ----DQLVERANKRSSQR-HKHIYATRVASALDTWSN-----WSNNDRIHVGTKLLELLM 196
Query: 375 ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR--S 432
+ + H + G+ T K V+ LE + R +
Sbjct: 197 NSVGLIH-----------------------IATNGEGTEKALKYVKPLESTLEWIARKNN 233
Query: 433 AKHMLIP-YVPMLVPPKKWKGYNKGGYL---FLPSYVMRTHGSRKQQEALKSVTGNCMKK 488
ML P Y PM+VPP+ W GGYL P +++T +R E L +V M
Sbjct: 234 VTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRMVKTR-NRAYLEELGNVD---MPM 289
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK-- 546
V+ AL+ + +T W++N +L+++ ++W G GL R + P KP D EV +
Sbjct: 290 VYTALNAIQATAWQINTPILNIMTTLWEQGATWCGLPPREGIPQPVKPFDIDTNEVARAA 349
Query: 547 WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
W+ + KA N E R + + L +A R Y+P+ LDFRGR Y + PHLN
Sbjct: 350 WRKAAFKAHSDNLEIQGARINVSMSLDIANRYSPFRKIYFPYQLDFRGRIYAV-PHLNPQ 408
Query: 607 SSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSA 666
+D +G+L FA G+PLG+ G +WL IH AN+ G +K S + R+ +V +H EI A
Sbjct: 409 GADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKASLEDRVKWVHDHQAEILAIA 466
Query: 667 ENPINGSRWW-----LTAEDPFQCLAACINLSEALKSSSPHS--VISHLPIHQDGSCNGL 719
+P W + P+Q LA C+ K H +S LPI DGSC+G+
Sbjct: 467 ADPFQARGWADHVGAQAIDKPWQFLAFCLEW----KGYCEHGDRFVSKLPIAMDGSCSGI 522
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS---NKDPSKHPQALLAK 776
QH++A+ R+ + AAVNLV + PADVY +A +V E D+ +D KH A
Sbjct: 523 QHFSAMLRDEVGGAAVNLVPSDLPADVYGLVAKKVIERAIHDAKHGTEDVLKHDADGKAY 582
Query: 777 I------LIDQ-----VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ L Q ++RK+ K++VMT YG G ++Q+
Sbjct: 583 VQEGTKNLAQQWTRFGINRKVTKRSVMTLAYGSKEYGFKDQV 624
>gi|328786720|ref|XP_001121402.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Apis
mellifera]
Length = 664
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 129/392 (32%), Positives = 211/392 (53%), Gaps = 40/392 (10%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR---PAFRHRFKT--------IL 405
W D +G L ++++ +Q P D++ PAF F+ I
Sbjct: 294 WPMDVITNIGKFLYKIILNDIMLQ----PEMLKGQDIKHSIPAFYTLFRNKGNYLSEQIK 349
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
HP +K Y + + L + + +P PP W + GGYL +
Sbjct: 350 PHPF--LSKLYKKLHMETLTFD----------VRLLPSYSPPLPWTSIHSGGYLITKTNF 397
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
+R+ + +++ + VF++L+ + S W++N +L ++ I+ GG++ V
Sbjct: 398 IRS----PIEHQFQNIKSKQLFPVFDSLNQISSIPWKINTAILDIVIKIFQDGGSVELNV 453
Query: 526 DRN-DVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
++ VL P L+++ T E Q+ ++ + K+ ++ ++ CDT KLS+A +++
Sbjct: 454 PQSVSVLSPPCSLNKNATIEEKQQIAIAIAQYKQKKKDMYALWCDTLYKLSIANHFRNK- 512
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL--FS 640
F+ P+NLDFRGR YP+ P+LNHLSSD+ R +L FA+G+PLG +G+ WLK+H+ NL F
Sbjct: 513 IFWLPYNLDFRGRVYPIPPYLNHLSSDLGRSLLLFAKGKPLGPNGINWLKLHVINLTNFK 572
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
G S RL + + ++ I DSA P+ G WW +E+P+Q LA CI ++ ALKS +
Sbjct: 573 KGS---SLKERLEYADQNMDNIIDSATKPLTGKMWWKQSEEPWQTLAGCIEIANALKSPN 629
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
I+ P+HQDGSCNGLQHYAALG++ + A
Sbjct: 630 IEKYITSFPVHQDGSCNGLQHYAALGKDQIGA 661
>gi|15843563|gb|AAK97228.2|AF303582_1 RNA polymerase [Trypanosoma brucei]
Length = 1274
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 135/381 (35%), Positives = 195/381 (51%), Gaps = 42/381 (11%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 740
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--- 559
I G + R D+ + +D + + + R+ ++ Q
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDISYESTGMDDDDDKTEVYNLQQRREYELQQDED 800
Query: 560 -----ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +
Sbjct: 801 WKNLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRAL 860
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +
Sbjct: 861 LEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVCSAEQPLYGDK 918
Query: 675 WWLTAEDPFQCLAACINLSEALKSS-SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A
Sbjct: 919 WWQEAAEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAT 978
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQVDRKL 786
VNLV E+PAD Y+ I + +K D+ +D L + L D + RK
Sbjct: 979 LVNLVPSERPADAYTGILKEMMSSIKADAERD-----HQWLQRCLGTGKGQDRDHIKRKT 1033
Query: 787 VKQTVMTSVYGVTFVGAREQI 807
+K+ +MT VYGVT G EQI
Sbjct: 1034 IKRPIMTQVYGVTGYGMSEQI 1054
>gi|9633997|ref|NP_052071.1| RNA polymerase [Yersinia phage phiYeO3-12]
gi|6598988|emb|CAB63592.1| RNA polymerase [Yersinia phage phiYeO3-12]
Length = 884
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 179/631 (28%), Positives = 300/631 (47%), Gaps = 86/631 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ AYAP L P + A I +
Sbjct: 75 LATLLPKLTTRIVEWL---------EEYATKKGRKPVAYAPLQSLKP-EASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNIAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVAHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSK------------------HPQALLAK 776
NL+ E D+Y +A +V+EI+K+D+ N P++ L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L V R + K++VMT YG G R+Q+
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQV 651
>gi|325272855|ref|ZP_08139190.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
gi|324102004|gb|EGB99515.1| DNA-directed RNA polymerase [Pseudomonas sp. TJI-51]
Length = 848
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/583 (30%), Positives = 278/583 (47%), Gaps = 86/583 (14%)
Query: 256 ADKVAVIVM-HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKI 314
AD +A + + H + G+ + R +Q V +V I ++E E+R+ +K +RKK
Sbjct: 93 ADVLAYLTLKHTLAGI----SQPRTLQHV--SVSIAQSVEDEMRLSGIRDK----ERKKY 142
Query: 315 IADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLI 374
++++ + + +R + I + RV A N W + + +G++L+ELL+
Sbjct: 143 ----DQLVERANKRSSQR-HKHIYATRVASALDTWSN-----WSNNDRIHVGTKLLELLM 192
Query: 375 ET-AYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR-- 431
+ +Q N G+ T K V+ LE + R
Sbjct: 193 NSVGLIQIATN------------------------GEGTEKALKYVKPLESTLEWIARKN 228
Query: 432 SAKHMLIP-YVPMLVPPKKWKGYNKGGYL---FLPSYVMRTHGSRKQQEALKSVTGNCMK 487
+ ML P Y PM+VPP+ W GGYL P +++T +R E L +V M
Sbjct: 229 NVTAMLRPVYEPMVVPPRNWTSPTDGGYLSSSLKPLRMVKTR-NRAYLEELGNVD---MP 284
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK- 546
V+ AL+ + +T W++N +L ++ ++W G GL R + P KP D EV +
Sbjct: 285 MVYTALNAIQATAWQINTPILKIMTTLWEQGSTWCGLPPREGIPQPAKPFDIDTNEVARA 344
Query: 547 -WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
W+ + K N E R + + L +A R Y+P+ LDFRGR Y + PHLN
Sbjct: 345 AWRKAAFKVHSDNLEIQGARINVSMSLDIANRYSPFRKIYFPYQLDFRGRIYAV-PHLNP 403
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
+D +G+L FA G+PLG+ G +WL IH AN+ G +K S + R+ +V +H EI
Sbjct: 404 QGADHTKGLLRFAYGKPLGEHGAKWLAIHGANV--AGYDKASLEDRVKWVHDHQAEILAI 461
Query: 666 AENPINGSRWW-----LTAEDPFQCLAACINLSEALKSSSPHS--VISHLPIHQDGSCNG 718
A +P W + P+Q LA C+ K H +S LPI DGSC+G
Sbjct: 462 AADPFQARGWADHVGAQAIDKPWQFLAFCLEW----KGYCEHGDRFVSKLPIAMDGSCSG 517
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS---NKDPSKHPQALLA 775
+QH++A+ R+ + AAVNLV + PADVY +A +V E D+ +D KH A
Sbjct: 518 IQHFSAMLRDEVGGAAVNLVPSDLPADVYGLVAKKVIERAIHDAKHGTEDVLKHDADGKA 577
Query: 776 KI------LIDQ-----VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ L Q ++RK+ K++VMT YG G ++Q+
Sbjct: 578 YVQEGTKNLAQQWTRFGINRKVTKRSVMTLAYGSKEYGFKDQV 620
>gi|342185708|emb|CCC95193.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343472868|emb|CCD15094.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1278
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 199/386 (51%), Gaps = 48/386 (12%)
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+K Y LPS ++ GS Q + + +ALD + WR++K +L V E+
Sbjct: 689 DKSVYNVLPSVAVK--GSTNQAMIISQA------PMMKALDAISRVPWRISKYMLHVQEA 740
Query: 514 IWVSGGNIAGL-----------VDRNDVLIPEKPLSEDMTEVQKWKWSV-----RKAKKI 557
I G + R D+ P SE++++ + V R+ +
Sbjct: 741 IVREGYGFGKIRPAFYPLHYCAKSRGDI-CHTLPGSENVSDADDDRAEVYNLQQRREYDL 799
Query: 558 NQ--------ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
Q E S R L AR + Y+P+++DFRGR YP+ LNH SD
Sbjct: 800 QQDEDWKSLSELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSD 859
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
R +LE+AE +PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P
Sbjct: 860 PFRALLEYAEPKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVRSAEQP 917
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
+ G +WW A +P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+
Sbjct: 918 LYGDKWWQEAAEPMQCLMACKELADALKYSQGPENFLSRIPVAVDGSYNGLQHYSAIGRD 977
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI-------DQ 781
A VNLV E+PAD Y+ I + + D+N+D HP A + L D
Sbjct: 978 AFGATLVNLVPSERPADAYTGILKEMMSSITADANRD---HPVA--QRCLGTGKGQDRDH 1032
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ RK +K+ +MT VYGVT G EQI
Sbjct: 1033 IKRKTIKRPIMTQVYGVTGYGMSEQI 1058
>gi|344299821|gb|EGW30174.1| hypothetical protein SPAPADRAFT_57614 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1073
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 212/405 (52%), Gaps = 27/405 (6%)
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQ 474
+Y V++ P +LE D S + PM+VPPK W +GGYL V +
Sbjct: 353 KYPVIKIHP-ILEN-DLSNCRGKVSRFPMVVPPKPWTNLFEGGYLVHKECVFMARFDKTY 410
Query: 475 QEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
K V+ + + VF L+ LGS W +N +L +L N A + + + IP
Sbjct: 411 LNYFKQVSYDGHLDSVFMTLNKLGSLAWAINPDMLKIL--------NRAANMPQGFLKIP 462
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
+P+S+ +V K+K + K I+ + R + L +A K+ E Y P+ LDF
Sbjct: 463 -RPISD---KVPKFKDKFAQQKYISSK--GARITFNMLLDMANGFSKNGEMLYTPYQLDF 516
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP +L+H+ SD R + F + LG G WLK HL+++F G + +
Sbjct: 517 RGRVYP-SSNLSHILSDEFRCLFMFWHSKALGNDGFNWLKYHLSSMF--GNSGFHMEQAI 573
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI----SHL 708
F + H +I DSA+ P +G +WWL ++ P+Q L+AC+ L++ + I +
Sbjct: 574 GFCDKHKQDIIDSAKYPFDGKQWWLKSKTPYQTLSACMELTKVWEFEEQGGNIEEFRTRF 633
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P+HQDGSCNGLQHYAAL R+ AVNL+ K D+Y E+A V K + D
Sbjct: 634 PVHQDGSCNGLQHYAALTRDERGGKAVNLLDEPKKQDIYMEVANIVES--KLQALIDSPD 691
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ L AK+ + + RKLVK TVMT+VYGVT +GA Q++ R+++
Sbjct: 692 ETERLYAKLGLIVLSRKLVKTTVMTTVYGVTTIGAAGQVRNRIKD 736
>gi|148699723|gb|EDL31670.1| polymerase (RNA) mitochondrial (DNA directed), isoform CRA_e [Mus
musculus]
Length = 935
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 203/376 (53%), Gaps = 19/376 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 537 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 588
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 589 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 648
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 649 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 708
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 709 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 768
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 769 HRV-FWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 826
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 827 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 886
Query: 700 SPHSVISHLPIHQDGS 715
P + ISHLP+HQ G+
Sbjct: 887 DPAAYISHLPVHQVGT 902
>gi|304274392|gb|ADM18943.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274394|gb|ADM18944.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274400|gb|ADM18947.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274402|gb|ADM18948.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 214 bits (545), Expect = 1e-52, Method: Composition-based stats.
Identities = 96/156 (61%), Positives = 118/156 (75%), Gaps = 3/156 (1%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KL +AR DE+ FY+PHNLDFRGRAYP+ P+L+H+ D+CRG+L F E +PLG+ GLRW
Sbjct: 4 KLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERGLRW 62
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL+NL G +K S D R AF HL +IFDSA+ P++G RWWL A+DP+QCLA CI
Sbjct: 63 LKIHLSNL--TGFDKASFDEREAFAMEHLDDIFDSADQPLDGKRWWLKADDPWQCLATCI 120
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
L+ AL+S P LPIHQDG+CNGLQHYAALG
Sbjct: 121 ELAAALRSPIPTEYACALPIHQDGTCNGLQHYAALG 156
>gi|304274396|gb|ADM18945.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
gi|304274398|gb|ADM18946.1| DNA-dependent RNA polymerase [Sporidiobolus salmonicolor]
Length = 165
Score = 214 bits (544), Expect = 2e-52, Method: Composition-based stats.
Identities = 95/156 (60%), Positives = 118/156 (75%), Gaps = 3/156 (1%)
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
KL +AR DE+ FY+PHNLDFRGRAYP+ P+L+H+ D+CRG+L F E +PLG+ GLRW
Sbjct: 4 KLEIARAFIDEK-FYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERGLRW 62
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIHL+NL G +K S D R AF HL ++FDSA+ P++G RWWL A+DP+QCLA CI
Sbjct: 63 LKIHLSNL--TGFDKASFDEREAFAMEHLDDVFDSADQPLDGKRWWLKADDPWQCLATCI 120
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALG 726
L+ AL+S P LPIHQDG+CNGLQHYAALG
Sbjct: 121 ELAAALRSPVPTEYACALPIHQDGTCNGLQHYAALG 156
>gi|89148158|gb|ABD62822.1| mitochondrial single-subunit RNA polymerase [Heterolobosea sp. OSA]
Length = 310
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 159/240 (66%), Gaps = 20/240 (8%)
Query: 606 LSSDVCRGVLEFAEGRPLG-----------KSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
L SD+ RG+L+FA+ P+G + G+ WLKIHLANL G +KLS D R+ +
Sbjct: 1 LGSDLNRGLLKFAKKVPIGAKYDFNYYINTRRGIFWLKIHLANLC--GQDKLSFDDRIKY 58
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
+++++ I DSA++P++G RWWL +E+P+Q LA+C L+ ++S +P S +P+ DG
Sbjct: 59 IDDNISNIMDSADHPLSGKRWWLDSENPWQSLASCFELTNVIRSPTPELFESQIPVQMDG 118
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQHYAALGR+ L A VNL+ KP DVYS + V + ++ D+ ++HP L
Sbjct: 119 SCNGLQHYAALGRDNLGALHVNLLPTIKPMDVYSGVLNVVKKNIEMDAK---NEHP---L 172
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
A IL V R +KQTVMTSVYGVT+VGAREQI++RL+E+ I D+ + ACY A V+
Sbjct: 173 ATILNGNVYRSTIKQTVMTSVYGVTWVGAREQIQKRLKERKEI-DEEMAYKCACYLATVT 231
>gi|238883374|gb|EEQ47012.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 1218
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 198/409 (48%), Gaps = 41/409 (10%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S +
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQ 564
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ ++ + + LD +G+T W +N +L V + GN G + IP
Sbjct: 565 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS-----IP 616
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
P D T QK K E S R E+ +A ++ + Y+ ++LDF
Sbjct: 617 --PSVPDETLPQKTK----------TELKSLRITFEIMNKLANAFGENGDLLYHCYSLDF 664
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP P L H D+ R + F PLG +G W+K LA+LF L
Sbjct: 665 RGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCL 716
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HL 708
F E + I DSA NP+ G +WW+ A+ PF LA C + + L I L
Sbjct: 717 EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRL 776
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYA L + AAVNL+ E DVY+ +V EI+K+ +D S+
Sbjct: 777 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYT----KVLEIVKKKIEQDISE 832
Query: 769 HPQALL----AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ AK + ++RKLVK+ VMT+VYGVT GA QI + ++E
Sbjct: 833 QNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE 881
>gi|68469100|ref|XP_721337.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|68470125|ref|XP_720824.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|77022784|ref|XP_888836.1| hypothetical protein CaO19_6499 [Candida albicans SC5314]
gi|46442714|gb|EAL02001.1| hypothetical protein CaO19.13852 [Candida albicans SC5314]
gi|46443252|gb|EAL02535.1| hypothetical protein CaO19.6499 [Candida albicans SC5314]
gi|76573649|dbj|BAE44733.1| hypothetical protein [Candida albicans]
Length = 1218
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 198/409 (48%), Gaps = 41/409 (10%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y +V+ P + L + Y+PML PPK W GGYL + + + T+ S +
Sbjct: 505 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQ 564
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ ++ + + LD +G+T W +N +L V + GN G + IP
Sbjct: 565 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS-----IP 616
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
P D T QK K E S R E+ +A ++ + Y+ ++LDF
Sbjct: 617 --PSVPDETLPQKTK----------TELKSLRITFEIMNKLANAFGENGDLLYHCYSLDF 664
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP P L H D+ R + F PLG +G W+K LA+LF L
Sbjct: 665 RGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCL 716
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HL 708
F E + I DSA NP+ G +WW+ A+ PF LA C + + L I L
Sbjct: 717 EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRL 776
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYA L + AAVNL+ E DVY+ +V EI+K+ +D S+
Sbjct: 777 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYT----KVLEIVKKKIEQDISE 832
Query: 769 HPQALL----AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ AK + ++RKLVK+ VMT+VYGVT GA QI + ++E
Sbjct: 833 QNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE 881
>gi|154338315|ref|XP_001565382.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134062431|emb|CAM42292.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1299
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 188/352 (53%), Gaps = 35/352 (9%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIW--------------------VSGGNIAGLVDR- 527
+ +ALD + WR+NK +L V E+I +S G+I DR
Sbjct: 730 MMKALDAISRVPWRINKYMLHVQEAIVREGFGFGKIRPGFYPLHYYSMSDGDIKYPSDRR 789
Query: 528 -NDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ--------ERHSQRCDTELKLSVARRM 578
+ +L +D+ + R+ + Q E S R L L AR +
Sbjct: 790 RSALLNSNDNDGDDLAAGDVFNLQQRRQCTLQQRQDWKELCELRSSRIHYLLGLRQARSI 849
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
Y+P+++DFRGR YP+ LNH SD RG+LE+AE +PLG+ GL WLK+HLAN
Sbjct: 850 VQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLLEYAEPKPLGEVGLYWLKVHLANK 909
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK- 697
G+ KLS D R+ +V+ H+ ++ SAENP++G RWW A +P QCL AC +++A K
Sbjct: 910 M--GMSKLSFDERVHYVDEHMEDVVQSAENPLSGDRWWQEASEPIQCLMACKEVADAAKC 967
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
S +S LP+ DGS NGLQHY+A+GR+ A VNLV E+PAD Y+ I + +
Sbjct: 968 SQGAEKFLSRLPVAVDGSYNGLQHYSAIGRDAFGAKLVNLVPSERPADAYTGILKEMLKS 1027
Query: 758 MKRDSNKDPSKHPQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ D+++D + L D+ + RK +K+ +MT VYGVT G EQI
Sbjct: 1028 ICIDADRDHQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQI 1079
>gi|89148156|gb|ABD62821.1| mitochondrial single-subunit RNA polymerase [Paravahlkampfia sp.
LA]
Length = 400
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 157/229 (68%), Gaps = 9/229 (3%)
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
L +DV RG+L FAEG+P+ + G+ WLKIHLANL G +KLS + R+ ++++++ +I DS
Sbjct: 1 LGADVNRGLLLFAEGQPISEKGIFWLKIHLANL--DGKDKLSFEERVQYIDDNIDDIMDS 58
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAAL 725
A+ P+ G RW+L E+P+Q LAACI L+ L++ P +S LP+ DGSCNGLQHYAAL
Sbjct: 59 ADRPLEGKRWFLGTENPWQALAACIELTNCLRAPVPTEYVSKLPVQMDGSCNGLQHYAAL 118
Query: 726 GRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRK 785
GR+ L A VNL+ EKP DVY+ + V + ++ D+ LAK L+ ++ R
Sbjct: 119 GRDNLGALHVNLLPTEKPMDVYNGVLALVVKYLENDARNGNQ------LAKSLVGKIYRS 172
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+KQTVMTSVYGVT+VGAREQI+RRL+EK I +D ++ CY A V+
Sbjct: 173 TIKQTVMTSVYGVTYVGAREQIQRRLKEKKEI-EDELVYQGPCYLASVT 220
>gi|441463239|gb|AGC35521.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph01]
Length = 858
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 169/604 (27%), Positives = 282/604 (46%), Gaps = 81/604 (13%)
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
K AA H + DK+ V + + V+ R + + ++ IG +E E
Sbjct: 73 KSGAAGRRHTAVAFIDKLDVDTVANITARVILDEVTRKSNLTKTSLAIGSMLENEFNSRK 132
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDT 361
F E+ +K + +E L R++ + L+ R++ E + W
Sbjct: 133 FEEEMPKAHKKFLKKAQKESLD------RRKWSHLLYPARLLGV-------ELEEWSEKD 179
Query: 362 QAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVE 420
+ +G +LV++ I+ T ++ V V+ A RF T+ + T R+
Sbjct: 180 RILVGLKLVDIFIQSTGLIEREV---------VQSA---RFGTLELLTANEATMRW---- 223
Query: 421 CDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYL--FLPSYVMRTHGSRKQQEAL 478
+E + +H+ Y+P +VPPK W GGY F +++TH Q+ L
Sbjct: 224 -----METENSRLEHLFPIYMPTIVPPKPWTSPFDGGYYTAFRRLKLVKTH----NQQYL 274
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-- 536
+ + + +V+EA++ L T W +N QVL V+ +++ +G +AGL + + +P +P
Sbjct: 275 EELANRDLSEVYEAINALQDTAWAINTQVLDVVRTLYETGAGVAGLPQADKLRMPARPHW 334
Query: 537 --------LSEDMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
EDMTE Q WK + N +R L VA + KDEE
Sbjct: 335 LPEGKEKMAVEDMTEEQVEEFKAWKAETHRTHVENAAISGRRASFLRTLGVAEKFKDEEA 394
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGG 642
F+YPH LD+RGRAYP+ +L +D+ RG+L F+ P+ + WL IH A + G
Sbjct: 395 FFYPHTLDWRGRAYPLPLYLTPQGNDLQRGLLTFSNAVPIHDQEAAEWLAIHGAGCW--G 452
Query: 643 VEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA---EDPFQCLAACINLSEALKSS 699
+K+ + R+ +V + +I SAENP + +R+W+ A E +Q LA C + LK
Sbjct: 453 YDKVDMEERVQWVLRNEEQIIASAENPYD-NRFWMDADKGEKKWQFLAFCFEWA-GLKRE 510
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ +S LPI DG+CNGLQ+++A+ + + AAVNL+ ++P D+Y ++ V E +
Sbjct: 511 G-YGYMSCLPIQMDGTCNGLQNFSAMLLDEVGGAAVNLIPADEPQDIYQKVCDIVCEQLA 569
Query: 760 RDSNK----------DPSKHPQ------ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGA 803
RD N D + + A +A + ++ RK+ K+ VMT YG G
Sbjct: 570 RDLNSSDMVMIKGKTDSGEEYEKVVCTVAEMASGWLPKMGRKVTKRPVMTLAYGARRFGF 629
Query: 804 REQI 807
Q+
Sbjct: 630 VSQV 633
>gi|422935529|ref|YP_007005430.1| RNA polymerase, partial [Erwinia phage vB_EamP-L1]
gi|339507913|gb|AEJ81474.1| RNA polymerase [Erwinia phage vB_EamP-L1]
Length = 900
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 166/584 (28%), Positives = 289/584 (49%), Gaps = 71/584 (12%)
Query: 254 LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKK 313
L A+ A I + L + +C V Q A +IGM IE E+R ++ + + +++
Sbjct: 125 LSAESAAAITLK--CALATLAKDVQC-PVTQVANNIGMTIEDELRFGRIRDQEQKFYKER 181
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET-KPWGRDTQAKLGSRLVEL 372
+ E+ L++ K + K+ + +++E + +LK E+T W + G R++EL
Sbjct: 182 V----EKALNQRKGQVYKKAFMQVIEGKMLE-KGILKPEDTWTRWTKGETINTGIRMLEL 236
Query: 373 LIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDR 431
LIE T V+ A + DV + K +KR G L G+
Sbjct: 237 LIESTGLVELERLHAGNAAKDVETV------RLTKEYADALSKRAGA-------LAGIAP 283
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKK 488
Y P +VPPK W GGY P ++RT + AL+ M +
Sbjct: 284 M-------YQPCVVPPKPWTEAVGGGYWAAGRKPLQLVRT----RSLAALRRYEEVSMPE 332
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEV 544
V +A++ +T WRVNK+VL V +I W ++ + DR + +P +PL D E+
Sbjct: 333 VIKAVNIAQNTAWRVNKKVLDVANAITQWQHCPVADVPAM-DRGE--MPARPLDIDTNEI 389
Query: 545 --QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPH 602
+ WK + ++ R S+R E LS A + + + ++P N+D+RGR Y + P
Sbjct: 390 ALKAWKKEASAFYRKDKARVSRRLSMEFMLSQANKFANYKAIWFPQNMDWRGRVYAV-PM 448
Query: 603 LNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEI 662
N +D+ +G+L FA+G+P+G+ G WLKIH AN + GV+K+ R+ FVE++ I
Sbjct: 449 FNPQGNDMTKGLLTFAQGKPIGEDGFYWLKIHGAN--TAGVDKVPFPQRIKFVEDNHTNI 506
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ A+ P+ + WW + PF LA C + + ++ LP+ DGSC+G+QH+
Sbjct: 507 MECAKAPLENT-WWAEQDSPFCFLAFCFEYAGVINHGLSYNC--SLPLAFDGSCSGIQHF 563
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD------------SNK------ 764
+A+ R+ + AVNL+ + D+Y ++ +V+E++K+D ++K
Sbjct: 564 SAMLRDEIGGKAVNLLPSAEVQDIYRIVSDKVNEVLKQDLINGTSTTLETVTDKKTGEIT 623
Query: 765 DPSKHPQALLAKILIDQ-VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ +K+ ++A+ ++ V+R + K++VMT YG G R+Q+
Sbjct: 624 ERTKYGTKVMAQWWLEHGVNRGVTKRSVMTLAYGSKEFGFRDQV 667
>gi|323512132|gb|ADX87591.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2008_A]
Length = 883
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 177/601 (29%), Positives = 290/601 (48%), Gaps = 90/601 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEHGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 I 807
+
Sbjct: 650 V 650
>gi|281416168|ref|YP_003347903.1| RNA polymerase [Vibrio phage N4]
gi|237701475|gb|ACR16468.1| RNA polymerase [Vibrio phage N4]
Length = 883
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 177/601 (29%), Positives = 290/601 (48%), Gaps = 90/601 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDSNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANILASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 I 807
+
Sbjct: 650 V 650
>gi|323512084|gb|ADX87544.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_A]
Length = 883
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 177/601 (29%), Positives = 290/601 (48%), Gaps = 90/601 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 I 807
+
Sbjct: 650 V 650
>gi|323512181|gb|ADX87639.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2007_A]
Length = 883
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 177/601 (29%), Positives = 290/601 (48%), Gaps = 90/601 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 I 807
+
Sbjct: 650 V 650
>gi|383389390|gb|AFH14406.1| RNA polymerase [Vibrio phage VP3]
Length = 883
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 177/601 (29%), Positives = 290/601 (48%), Gaps = 90/601 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 I 807
+
Sbjct: 650 V 650
>gi|325171278|ref|YP_004251249.1| RNA polymerase [Vibrio phage ICP3]
gi|323511984|gb|ADX87446.1| RNA polymerase [Vibrio phage ICP3]
Length = 883
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 177/601 (29%), Positives = 290/601 (48%), Gaps = 90/601 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWANCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 I 807
+
Sbjct: 650 V 650
>gi|68299728|ref|YP_249577.1| RNA polymerase [Vibriophage VP4]
gi|66473267|gb|AAY46276.1| RNA polymerase [Vibriophage VP4]
Length = 883
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 177/601 (29%), Positives = 290/601 (48%), Gaps = 90/601 (14%)
Query: 249 PHIE-----LLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL 303
PH+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR
Sbjct: 98 PHVSKGYFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIR 154
Query: 304 -EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKP 356
E+ K++K + K L KR N I K MEA K N +
Sbjct: 155 DEEIKHFKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEA 201
Query: 357 WGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
W +D + +G R +E+LIE T VQ +FK I K
Sbjct: 202 WEKDVKFHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKD 238
Query: 416 YGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTH 469
+ + P +E L A + + P Y PM+V PK+W G GGY P ++R
Sbjct: 239 HEALHLAPEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV- 297
Query: 470 GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IAGLVDR 527
GS++ + + V M +V++A++T+ T WR+NK VL+V+ ++ V+ N + +
Sbjct: 298 GSKRALDRYRQVD---MPEVYDAINTIQETAWRINKDVLAVVNNV-VTWTNCPVEDVPSI 353
Query: 528 NDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
+ + +PEKP D E ++KWK + + + R S+R E LS A + Y
Sbjct: 354 DKLALPEKPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIY 413
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P+N+D+RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K
Sbjct: 414 FPYNMDWRGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDK 470
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+S + R+ +V ++ I SAE P++ + WW + PF LA C + +K+ S
Sbjct: 471 VSLEDRVKWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFE 529
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DS 762
S LP+ DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++
Sbjct: 530 SSLPLAFDGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYGIVAVKVNEVLRDLVISG 589
Query: 763 NKDPSK----------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+D + + L A+ L V R + K++VMT YG G +Q
Sbjct: 590 TEDEMQTLEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQ 649
Query: 807 I 807
+
Sbjct: 650 V 650
>gi|241957393|ref|XP_002421416.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223644760|emb|CAX40751.1| DNA-directed RNA polymerase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 1211
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 135/405 (33%), Positives = 196/405 (48%), Gaps = 32/405 (7%)
Query: 414 KRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
K Y VE P + L + Y+PML PPK W GGYL + + + T+ S +
Sbjct: 497 KTYITVEVHPYIESKLQSLKLGTHLHYLPMLHPPKPWVSPESGGYLTIKTNFVSTNDSIQ 556
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ ++ + + LD +G+T W +N +L + + N G + IP
Sbjct: 557 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPFMLDIFNKLMEEEPN--GFLS-----IP 609
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
PL D T QK K E S R E+ +A K+ + Y+ ++LDF
Sbjct: 610 --PLVPDATLPQKTK----------TELKSLRITFEIMNKLANAFGKNGDLLYHCYSLDF 657
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP P L H D+ R + F PLG +G W+K LA+LF + L
Sbjct: 658 RGRVYPFSP-LTHYGGDLARSLFMFWHSEPLGPNGFYWIKYQLASLFG-------QNNCL 709
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS----HL 708
F E + I DSA NP+ G +WW+ A+ PF LA C + + L I
Sbjct: 710 EFYEENHDNIVDSARNPMGGRKWWMKADKPFSALAVCFEIIKILDHCRSGGRIEDYKCRF 769
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
PIHQDGSCNGLQHYA L + AAVNL+ E DVY+++ V + +++D + +
Sbjct: 770 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRSETKQDVYTKVLEIVKKKIEQDVVEQNLE 829
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ A+ + ++RKLVK+ VMT+VYGVT GA QI + ++E
Sbjct: 830 IDKLETAEFFLPILNRKLVKRPVMTTVYGVTLAGASSQILQTIKE 874
>gi|401422884|ref|XP_003875929.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322492169|emb|CBZ27443.1| mitochondrial DNA-directed RNA polymerase,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1511
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/295 (39%), Positives = 172/295 (58%), Gaps = 22/295 (7%)
Query: 516 VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
++ G++ L+ R ++ +K Q WK ++++ R S R L L A
Sbjct: 1016 LAAGDVFNLLQRRQCILQQK---------QDWK-------ELSELR-SSRIHYLLGLRQA 1058
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R + Y+P+++DFRGR YP+ LNH SD RG+LE+AE +PLG GL WLK+HL
Sbjct: 1059 RSIVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRGLLEYAEPKPLGAVGLYWLKVHL 1118
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN G+ KLS D R+ +V+ H+ ++ SAE+P+ G RWW A +P QCL AC +++A
Sbjct: 1119 ANKM--GMSKLSFDERVHYVDEHMEDVVQSAESPLVGDRWWQEASEPIQCLMACKEVADA 1176
Query: 696 LK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
+K S P +S LP+ DGS NGLQHY+A+GR+ A VNLV E+PAD Y+ I +
Sbjct: 1177 MKCSQGPEKFLSRLPVAVDGSYNGLQHYSAIGRDAFGAKLVNLVPSERPADAYTGILKEM 1236
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ + D+++D + L D+ + RK +K+ +MT VYGVT G EQI
Sbjct: 1237 LKSICIDADRDHQVAQRCLGTGRGQDKDHIKRKTIKRPIMTQVYGVTGYGMSEQI 1291
>gi|149234804|ref|XP_001523281.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146453070|gb|EDK47326.1| hypothetical protein LELG_05507 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1259
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 134/426 (31%), Positives = 207/426 (48%), Gaps = 31/426 (7%)
Query: 395 PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYN 454
P F ILK + R+ ++ +P + + + + + P+L PP+ W G++
Sbjct: 518 PGLYRAFTDILKSNKKHAKVRFILI--NPALSKSVKLGSTFGDQHFFPLLCPPQPWLGHS 575
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
GG + + Q+ K+ + + F LD +G T W VN +L V
Sbjct: 576 TGGMMNSAINFVAGFDKLHQRFLQKAQLQGKLDRAFLCLDQMGKTGWCVNTDILDVFNKA 635
Query: 515 WVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSV 574
+ + D + P KP + +V R +KI + +K
Sbjct: 636 MDLPSGLLKIPPPLDTM-PTKPKDQTARDV-------RNQRKIYET---------IKAVA 678
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
+ + ++ + DFRGRAY + +NH D+ R + +F E +PLG+ G WLK
Sbjct: 679 NAYGVNGDILFHCYLFDFRGRAYAL-SQINHYGEDIMRSLFQFWEAKPLGERGFYWLKYQ 737
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS---RWWLTAEDPFQCLAACIN 691
LA+LF G E + F E H I +A NP++ RWWL A+ PFQ LA C+
Sbjct: 738 LASLFKPGKETSCEE----FFEKHKNNILQAASNPLDDEALRRWWLQADKPFQFLATCME 793
Query: 692 LSEALK----SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
+++ LK ++ + I +PIHQDGSCNGLQHYA L R+ L +VNL+ E DVY
Sbjct: 794 VAKVLKHLGNGNNVATFICRMPIHQDGSCNGLQHYAGLARDDLGGRSVNLLPLETKMDVY 853
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
E+ V + ++ D + + AK+++ +DRKLVK+ VMT+VYGVT GA EQI
Sbjct: 854 VEVRDLVEKKIRNDIGTQLAAPEEVAKAKLILQILDRKLVKRPVMTTVYGVTRYGASEQI 913
Query: 808 KRRLEE 813
R++E
Sbjct: 914 YSRIKE 919
>gi|157870161|ref|XP_001683631.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
gi|68126697|emb|CAJ04832.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania major
strain Friedlin]
Length = 1509
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/393 (35%), Positives = 202/393 (51%), Gaps = 56/393 (14%)
Query: 455 KGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
K Y LPS ++ GS Q + + +ALD + WR+NK +L V E++
Sbjct: 913 KSVYGVLPSVAVK--GSANQAMIVSQA------PMLKALDAISRVPWRINKYMLHVQEAV 964
Query: 515 --------------------WVSGGNIAGLVDRNDVLIPEKPLSEDMTEV---------- 544
++S G I DR + +D +++
Sbjct: 965 VREGFGFGKIRPGFYPLHYYYMSDGEIRYPSDRRRSALLNGNDDDDDSDLAAGDVFNLLQ 1024
Query: 545 -------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
QK W K++++ R S R L L AR + Y+P+++DFRGR Y
Sbjct: 1025 RRQCILQQKQDW-----KELSELR-SSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMY 1078
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ LNH SD RG+LE+AE +PLG GL WLK+HLAN G+ KLS D R+ +V+
Sbjct: 1079 PLPGRLNHTGSDPFRGLLEYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDE 1136
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS-SPHSVISHLPIHQDGSC 716
H+ ++ SAE+P+ G RWW A +P QCL AC +++A+K S P +S LP+ DGS
Sbjct: 1137 HMEDVVQSAESPLVGDRWWQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSY 1196
Query: 717 NGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
NGLQHY+A+GR+ A VNLV E+PAD Y+ I + + + D+++D + L
Sbjct: 1197 NGLQHYSAIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDADRDHQVAQRCLGTG 1256
Query: 777 ILIDQ--VDRKLVKQTVMTSVYGVTFVGAREQI 807
D+ + RK +K+ +MT VYGVT G EQI
Sbjct: 1257 RGQDKDHIKRKTIKRPIMTQVYGVTSYGMSEQI 1289
>gi|321454096|gb|EFX65282.1| hypothetical protein DAPPUDRAFT_264936 [Daphnia pulex]
Length = 399
Score = 208 bits (530), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR YP PHL HLS D+ R +L FA+G+PLG G WLK+H+ NL +G ++ R
Sbjct: 52 RGRVYPCSPHLTHLSHDMARSLLFFAQGKPLGADGFNWLKLHVINL-TGTKKREPISERH 110
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS-SSPHSVISHLPIH 711
A+ E + EI DSA+NP+ G +WW+ +++P+Q LAAC+ ++ AL+ P + HLPIH
Sbjct: 111 AYAEKIMPEILDSADNPLTGRQWWVNSDEPWQTLAACMEVANALRCPEGPEAYGCHLPIH 170
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
QDGSCNGLQHYAALGR+T+ A +VNL ++P DVYS +A +++R+ +KD + + +
Sbjct: 171 QDGSCNGLQHYAALGRDTVGAESVNLTPTDRPQDVYSNVA----NLVERERSKDAANNVE 226
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVT-FVGARE 805
+A++L ++RK++KQTV+T+VYGVT F A++
Sbjct: 227 --IAQLLAGLINRKIIKQTVITTVYGVTRFTSAKD 259
>gi|255731650|ref|XP_002550749.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131758|gb|EER31317.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 1205
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 200/406 (49%), Gaps = 36/406 (8%)
Query: 416 YGVVECD--PLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
Y V D P + L+ Y+P+L PPK W GGYL + ++ T +
Sbjct: 491 YAVYTIDIHPYLESKLETFTTGTYFRYLPLLCPPKPWTNSQNGGYLNYQTRLIATTDTVH 550
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
++ K+ + + LD +G+T W +N Q+L V + ++ N G ++ +IP
Sbjct: 551 KKLLEKAGVRGQLDSAYNCLDQIGNTPWAINPQMLDVFNKV-INYPN--GFLEI-PAIIP 606
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDF 592
+ L K +E + R E+ VA K+ + Y+ + LDF
Sbjct: 607 DSNL----------------PSKERRELKNLRTSIEITNKVANAFGKNGDLLYHCYMLDF 650
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR Y P L H SD+ R + F + +PLG++G W+K LA+LF G++
Sbjct: 651 RGRVYTFSP-LTHYGSDLTRSLFLFWKSQPLGENGFYWVKYQLASLF--GIKNCEE---- 703
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL----KSSSPHSVISHL 708
F E + I DSA NP++GSRWW+ A+ PF L+ C + L ++ +S L
Sbjct: 704 -FYEENKQNIIDSAMNPLDGSRWWMKADKPFCALSVCFEIKNILDFQESGNNIEDYLSRL 762
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVA-GEKPADVYSEIAVRVHEIMKRDSNKDPS 767
PIHQDGSCNGLQHYAAL + AVNL+ G+ DVY E+ V +++D
Sbjct: 763 PIHQDGSCNGLQHYAALAADENGGRAVNLIGVGDSKQDVYIEVMKVVRGKIEKDIKDAKL 822
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
LAK + + RKLVK+ VMT+VYGVT GA QIK ++E
Sbjct: 823 PEETIDLAKFYLKILCRKLVKRPVMTTVYGVTLAGASAQIKSTIKE 868
>gi|398016041|ref|XP_003861209.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
gi|322499434|emb|CBZ34507.1| mitochondrial DNA-directed RNA polymerase, putative [Leishmania
donovani]
Length = 1510
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 160/266 (60%), Gaps = 11/266 (4%)
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
QK W K++++ R S R L L AR + Y+P+++DFRGR YP+ LN
Sbjct: 1033 QKQDW-----KELSELR-SSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLN 1086
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
H SD RG+LE+AE +PLG GL WLK+HLAN G+ KLS D R+ +V+ H+ ++
Sbjct: 1087 HTGSDPFRGLLEYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQ 1144
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYA 723
SAE+P+ G RWW A +P QCL AC +++A+K S P +S LP+ DGS NGLQHY+
Sbjct: 1145 SAESPLVGDRWWQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQHYS 1204
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ-- 781
A+GR+ A VNLV E+PAD Y+ I + + + D+ +D + L D+
Sbjct: 1205 AIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDAGRDHQVAQRCLGTGRGQDKDH 1264
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ RK +K+ +MT VYGVT G EQI
Sbjct: 1265 IKRKTIKRPIMTQVYGVTSYGMSEQI 1290
>gi|146087926|ref|XP_001465944.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
gi|134070045|emb|CAM68377.1| putative mitochondrial DNA-directed RNA polymerase [Leishmania
infantum JPCM5]
Length = 1510
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 160/266 (60%), Gaps = 11/266 (4%)
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
QK W K++++ R S R L L AR + Y+P+++DFRGR YP+ LN
Sbjct: 1033 QKQDW-----KELSELR-SSRIHYLLGLRQARSIVQFSHIYFPNSMDFRGRMYPLPGRLN 1086
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
H SD RG+LE+AE +PLG GL WLK+HLAN G+ KLS D R+ +V+ H+ ++
Sbjct: 1087 HTGSDPFRGLLEYAEPKPLGAVGLYWLKVHLANKM--GMSKLSFDERVHYVDEHMEDVVQ 1144
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALKSS-SPHSVISHLPIHQDGSCNGLQHYA 723
SAE+P+ G RWW A +P QCL AC +++A+K S P +S LP+ DGS NGLQHY+
Sbjct: 1145 SAESPLVGDRWWQEASEPIQCLMACKEVADAMKCSQGPEKFLSRLPVAVDGSYNGLQHYS 1204
Query: 724 ALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ-- 781
A+GR+ A VNLV E+PAD Y+ I + + + D+ +D + L D+
Sbjct: 1205 AIGRDAFGAKLVNLVPSERPADAYTGILKEMLKSICIDAGRDHQVAQRCLGTGRGQDKDH 1264
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQI 807
+ RK +K+ +MT VYGVT G EQI
Sbjct: 1265 IKRKTIKRPIMTQVYGVTSYGMSEQI 1290
>gi|344229620|gb|EGV61505.1| DNA/RNA polymerase [Candida tenuis ATCC 10573]
Length = 1100
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 150/458 (32%), Positives = 233/458 (50%), Gaps = 50/458 (10%)
Query: 363 AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECD 422
KL S +V+LL+ VQ P + F H+ I++ P K YG + +
Sbjct: 360 VKLFSIIVKLLVGHCKVQVPQEFEGETNWFGGNLFHHQ---IIRLPKSK----YGKLSLN 412
Query: 423 PLVLEGLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS 480
P V + S + ++PMLVPPKKW ++GGYL ++ LK
Sbjct: 413 PYVFYEMKASELQIGFDRLFLPMLVPPKKWVSPDEGGYLNNIKSIISNLNEPAYLLYLKR 472
Query: 481 V-TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
T + ++ L +GS W +++ +L V + G I G+ + D++
Sbjct: 473 ANTSGQLDFLYRNLSYMGSVPWCLDQDMLKVFNTAMEKEGGILGIPPKIDLI-------- 524
Query: 540 DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599
T++ K ++S K + + + S+R L + +A KD Y PHN+DFRGR YPM
Sbjct: 525 --TKLDKSRYS----KLMYERQKSKRVKYNLIMKIANAFKDN-IMYLPHNVDFRGRVYPM 577
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
L++ DV R +L+F + PLG +GL WLK LA L+ G +KL + R+ FV+ +
Sbjct: 578 VSVLSYQDEDVTRSLLQFWDPHPLGSNGLNWLKYQLAGLY--GKDKLPMEDRIEFVDANY 635
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH----LPIHQDGS 715
+ SA +P+ ++WW+ A+ P+Q L C E LK S IS +PIHQDGS
Sbjct: 636 NFVLSSARDPMQ-NKWWMEADSPWQVLRLC---KEFLKISEFSGDISEYKSRVPIHQDGS 691
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR--DSNKDPSKHPQAL 773
CNGLQHYAAL +++ AVNL+ E D+Y+E+ + I+ + D+ D ++
Sbjct: 692 CNGLQHYAALSQDSGGGKAVNLIPSETRQDIYNEV---LETILTKVEDTPID------SI 742
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+ KI + RK++K+ +MT VYGVT G EQ++ L
Sbjct: 743 IGKI----ITRKVIKRPIMTKVYGVTPHGVIEQLQEEL 776
>gi|281416282|ref|YP_003347522.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
gi|262410401|gb|ACY66666.1| T3/T7-like RNA polymerase [Klebsiella phage KP32]
Length = 906
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 188/690 (27%), Positives = 323/690 (46%), Gaps = 108/690 (15%)
Query: 178 LRRRQVKQETEAWERMVDEY-KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE---R 233
L R Q+ E EA+E + K LE ++ A N+ K L L L++ I+
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 234 EQKMQRTKKQKAAY------APHIEL------------LPADKVAVIVMHKMMGLVMAGH 275
EQ R KK +A Y A + L + ++ +A++ + ++G +
Sbjct: 91 EQANARGKKPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTLTDAS 150
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
+ + Q + +G A+E E R E+ Y +K + + L KRV
Sbjct: 151 K---ATIQQVSSQLGKALEDEARFGRIREQEATYFKKNV-----------ADQLDKRVGH 196
Query: 336 LIKSK--RVMEA----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADY 388
+ K +V+EA + +L + W D Q +G++L+ELLIE T V+ N
Sbjct: 197 VYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMAD 256
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLV 445
DV +V+ P +E L + A + + P Y P +V
Sbjct: 257 GSDDV--------------------TSMQMVQLAPAFVELLSKRAGALAGISPMYQPCVV 296
Query: 446 PPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY + P ++RTH + AL+ M +V++A++ +T W+
Sbjct: 297 PPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWK 352
Query: 503 VNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--K 556
VNK+VL+V+ I W G++ ++R + +P +P D EV + W A +
Sbjct: 353 VNKKVLAVVNEIINWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYR 409
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ R S+R E ++ A + + + ++P+N+D+RGR Y + N +D+ +G+L
Sbjct: 410 KDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGMLT 468
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
A+G+P+G G WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW
Sbjct: 469 LAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WW 525
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
T + PF LA C + ++ LP+ DGSC+G+QH++A+ R+++ AVN
Sbjct: 526 TTQDSPFCFLAFCFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVN 583
Query: 737 LVAGEKPADVYSEIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKI 777
L+ + D+Y +A +V+E++ ++ ++K+ + + L A+
Sbjct: 584 LLPSDTVQDIYKIVADKVNEVLHQHAVNGSQTVVEQIADKETGEFREKVTLGESVLAAQW 643
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L V RK+ K++VMT YG G R+Q+
Sbjct: 644 LQYGVTRKVTKRSVMTLAYGSKEFGFRQQV 673
>gi|71665631|ref|XP_819783.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70885100|gb|EAN97932.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1278
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 151/251 (60%), Gaps = 5/251 (1%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E+ S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 810 EQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 869
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A
Sbjct: 870 PKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVQSAESPLHGDKWWQEA 927
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 928 AEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 987
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVY 796
E+PAD Y+ I + + D+ KD + L D V RK +K+ +MT VY
Sbjct: 988 PSERPADAYTGILKEMMRSIMADAEKDNPVAQRCLGTGKGQDCNHVKRKTIKRPIMTQVY 1047
Query: 797 GVTFVGAREQI 807
GVT G EQI
Sbjct: 1048 GVTGYGMSEQI 1058
>gi|407860406|gb|EKG07407.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1277
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 151/251 (60%), Gaps = 5/251 (1%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E+ S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 809 EQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 868
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A
Sbjct: 869 PKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVQSAESPLHGDKWWQEA 926
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 927 AEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 986
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVY 796
E+PAD Y+ I + + D+ KD + L D V RK +K+ +MT VY
Sbjct: 987 PSERPADAYTGILKEMMRSIMADAEKDNPVAQRCLGTGKGQDCNHVKRKTIKRPIMTQVY 1046
Query: 797 GVTFVGAREQI 807
GVT G EQI
Sbjct: 1047 GVTGYGMSEQI 1057
>gi|340058755|emb|CCC53117.1| mitochondrial DNA-directed RNA polymerase,putative, (fragment),
partial [Trypanosoma vivax Y486]
Length = 517
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/256 (43%), Positives = 151/256 (58%), Gaps = 15/256 (5%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 49 ELRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 108
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLGK GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE P+ G +WW A
Sbjct: 109 PKPLGKEGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIDDVVRSAELPLYGDKWWQEA 166
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S P + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 167 AEPMQCLMACKELADALKCSQGPENFLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 226
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL-------IDQVDRKLVKQTV 791
E+PAD Y+ I + + D+ +D HP A + L D + RK +K+ +
Sbjct: 227 PSERPADAYTGILKEMMRSITADAARD---HPVA--QRCLGTGKGQDCDHIKRKTIKRPI 281
Query: 792 MTSVYGVTFVGAREQI 807
MT VYGVT G EQI
Sbjct: 282 MTQVYGVTGYGMSEQI 297
>gi|338826814|ref|YP_004678728.1| RNA polymerase [Enterobacteria phage K30]
gi|335335277|gb|AEH41021.1| RNA polymerase [Enterobacteria phage K30]
Length = 906
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 187/690 (27%), Positives = 323/690 (46%), Gaps = 108/690 (15%)
Query: 178 LRRRQVKQETEAWERMVDEY-KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE---R 233
L R Q+ E EA+E + K LE ++ A N+ K L L L++ I+
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNVA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 234 EQKMQRTKKQKAAY------APHIEL------------LPADKVAVIVMHKMMGLVMAGH 275
EQ R KK +A Y A + L + ++ +A++ + ++G +
Sbjct: 91 EQANARGKKPRAYYPIKHGVASELALSMGAEVLNEKRGVSSEAIALLTIKVVLGTLTDAS 150
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
+ + Q + +G A+E E R E+ +Y +K + + L KRV
Sbjct: 151 K---ATIQQVSSQLGKALEDEARFGRIREQEASYFKKNV-----------ADQLDKRVGH 196
Query: 336 LIKSK--RVMEA----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADY 388
+ K +V+EA + +L + W D Q +G++L+ELLIE T V+ N
Sbjct: 197 VYKKAFMQVVEADMISKGMLGGDNWSSWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMAD 256
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLV 445
DV +V+ P +E L + A + + P Y P +V
Sbjct: 257 GSDDV--------------------TSMQMVQLAPAFVELLSKRAGALAGISPMYQPCVV 296
Query: 446 PPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY + P ++RTH + AL+ M +V++A++ +T W+
Sbjct: 297 PPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYEDVHMPEVYKAVNLAQNTPWK 352
Query: 503 VNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--K 556
VNK+VL+V+ I W G++ ++R + +P +P D EV + W A +
Sbjct: 353 VNKKVLAVVNEIINWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYR 409
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ R S+R E ++ A + + + ++P+N+D+RGR Y + N +D+ +G+L
Sbjct: 410 KDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGMLT 468
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
A+G+P+G G WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW
Sbjct: 469 LAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEANILASAADPLNNT-WW 525
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+ PF LA C + ++ LP+ DGSC+G+QH++A+ R+++ AVN
Sbjct: 526 TQQDSPFCFLAFCFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVN 583
Query: 737 LVAGEKPADVYSEIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKI 777
L+ + D+Y +A +V+E++ ++ ++K+ + + L A+
Sbjct: 584 LLPSDTVQDIYKIVADKVNEVLHQHVINGSQTVVEQIADKETGEFREKVMLGESVLAAQW 643
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L V RK+ K++VMT YG G R+Q+
Sbjct: 644 LQYGVTRKVTKRSVMTLAYGSKEFGFRQQV 673
>gi|407425509|gb|EKF39474.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi marinkellei]
Length = 1328
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 151/251 (60%), Gaps = 5/251 (1%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E+ S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 860 EQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 919
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A
Sbjct: 920 PKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVRSAESPLHGDKWWQEA 977
Query: 680 EDPFQCLAACINLSEALKSS-SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 978 AEPMQCLMACKELADALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 1037
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVY 796
E+PAD Y+ I + + D+ KD + L D V RK +K+ +MT VY
Sbjct: 1038 PSERPADAYTGILKEMMRSILADAEKDNPVAQRCLGTGKGQDCNHVKRKTIKRPIMTQVY 1097
Query: 797 GVTFVGAREQI 807
GVT G EQI
Sbjct: 1098 GVTGYGMSEQI 1108
>gi|241568699|ref|XP_002402558.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
gi|215500047|gb|EEC09541.1| DNA-directed RNA polymerase 2A, putative [Ixodes scapularis]
Length = 389
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/275 (42%), Positives = 164/275 (59%), Gaps = 11/275 (4%)
Query: 541 MTEVQKWKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
MT+++K K S + K+ E +S CD KLS+A + + F L R
Sbjct: 1 MTKLEKAKVSRERMVLKRKRAEMYSLWCDALYKLSIANHVTINKAFL--PKLPCSRRHLL 58
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
P + + DV RG+L FA G PLG+ GL WLK+HL NL +G ++ RL F
Sbjct: 59 CSPGESAVGRDVVRGILLFARGEPLGEKGLDWLKVHLINL-TGLKKREPASERLKFANKM 117
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
L EI DSA+NP+ G RWW ++E+P+Q LA C ++ A++S P + HLP+HQDGSCNG
Sbjct: 118 LPEILDSADNPMTGRRWWASSEEPWQTLACCREVAAAVRSPDPRRYVCHLPVHQDGSCNG 177
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+ A VNL+ ++P DVYS +A V +R+ KD + +A++L
Sbjct: 178 LQHYAALGRDAHGARQVNLLPEDRPQDVYSGVAAMV----ERERTKDAAN--GVAIAQVL 231
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT GA QI ++L++
Sbjct: 232 EGFIKRKVVKQTVMTVVYGVTRFGAHLQIMKQLKD 266
>gi|323512036|gb|ADX87497.1| T3/T7-like RNA polymerase [Vibrio phage ICP3_2009_B]
Length = 883
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 176/594 (29%), Positives = 284/594 (47%), Gaps = 83/594 (13%)
Query: 250 HIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL-EKTKN 308
+ ++ + A I++ + ++ ++ V V + A+ IG IE EIR E+ K+
Sbjct: 104 YFAMIKPESAAFIIVKTTLNILA---KEESVPVQRVAMAIGGNIEDEIRFGRIRDEEIKH 160
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA------QKLLKNEETKPWGRDTQ 362
+K + K L KR N I K MEA K N + W +D +
Sbjct: 161 FKERV------------KPNLDKR-NGFIYKKAYMEAVEAGMQDKGELNSTHEAWEKDVK 207
Query: 363 AKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
+G R +E+LIE T VQ +FK I K + +
Sbjct: 208 FHVGIRAIEMLIEATGMVQ----------------LERKFKGI-------PDKDHEALHL 244
Query: 422 DPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQ 475
P +E L A + + P Y PM+V PK+W G GGY P ++R GS++
Sbjct: 245 APEYVEKLTNRAHALAGISPMYQPMIVKPKRWTGVQGGGYWAKGRRPLNLIRV-GSKRAL 303
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPE 534
+ + V M +V++A++T+ T WR+NK VL+V+ ++ V D L +PE
Sbjct: 304 DRYRQVG---MPEVYDAINTIQETAWRINKDVLAVVNNVVTWVNCPVEDVPSIDKLALPE 360
Query: 535 KPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDF 592
KP D E ++KWK + + + R S+R E LS A + Y+P+N+D+
Sbjct: 361 KPEDIDNNEESLKKWKKAAAAIYRKEKARQSRRISLEFALSQANKFSKYNEIYFPYNMDW 420
Query: 593 RGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRL 652
RGR Y + P N +D+ +G+L FA+ P+G G WL +H AN GV+K+S + R+
Sbjct: 421 RGRVYAI-PMFNPQGNDMVKGLLTFAKKVPVGIDGGYWLAVHGAN--CAGVDKVSLEDRV 477
Query: 653 AFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQ 712
+V ++ I SAE P++ + WW + PF LA C + +K+ S S LP+
Sbjct: 478 KWVNDNEANIIASAEAPLDFT-WWAEQDSPFCFLAFCFEWAAYVKAGKKPSFESSLPLAF 536
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR---DSNKDPSK- 768
DG+C+GLQH++A+ R+ + AAVNL+ +KP D+Y +AV+V+E+++ +D +
Sbjct: 537 DGTCSGLQHFSAMLRDEIGGAAVNLLPADKPQDIYDIVAVKVNEVLRDLVISGTEDEMQT 596
Query: 769 ---------------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ L A+ L V R + K++VMT YG G +Q+
Sbjct: 597 LEDKKTGEITERLVLGTRTLAAQWLEYGVTRSVTKRSVMTLAYGSKEYGFADQV 650
>gi|268570220|ref|XP_002640721.1| Hypothetical protein CBG19789 [Caenorhabditis briggsae]
Length = 1030
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 177/312 (56%), Gaps = 26/312 (8%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY-----VMRTHGSRKQQEALKSVTGNCMKK-VFEALD 494
+PM VPP+ W GG L+ + R E + + + VF+AL+
Sbjct: 519 LPMTVPPRPWIDRGTGGPLYTAGQDIIRNMFEFKSVRLNDEMRQRIQSPAQGRPVFDALN 578
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGG--------NIAGLVDRNDVL-IPE-----KPLSED 540
LGST W +N+ +L L++++ G G+ R+D +P+ + ++
Sbjct: 579 QLGSTPWVINESMLDTLKTVFGQSGCKESEPLLEKLGIPMRHDTFDVPDFVREFGNVKKE 638
Query: 541 MTEVQKWKWSVRK---AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
+V+K++ +K A K+ E +S C + ++ +A + + ++PHN+DFRGR Y
Sbjct: 639 DVDVEKFRRYAKKKAEAVKMRNESNSLWCWMQYRVVLADHFRGQT-LFFPHNMDFRGRVY 697
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
P+ P+L+H+ DV R +L+FA+ +PLG G WLK+H NL +G +++ S R+ E
Sbjct: 698 PLSPYLSHMGDDVNRCILKFAKSQPLGSHGFDWLKLHCVNL-TGTMKRASVADRMVEAER 756
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSC 716
+ I DSA NP+NG +WW+++++P+Q LAAC+ + A+K S S S LP+HQDGSC
Sbjct: 757 LIPSILDSARNPLNGEKWWMSSDEPWQTLAACVEIENAMKYGSDVASFPSQLPVHQDGSC 816
Query: 717 NGLQHYAALGRN 728
NGLQHYAALGR+
Sbjct: 817 NGLQHYAALGRD 828
>gi|448537583|ref|XP_003871363.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis Co 90-125]
gi|380355720|emb|CCG25238.1| hypothetical protein CORT_0H01220 [Candida orthopsilosis]
Length = 1236
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 198/387 (51%), Gaps = 48/387 (12%)
Query: 440 YVPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHGSRKQQEALKSV-TGNCMKKVFEAL 493
+ P+L PP+ W G NKG YL FL + + QQ L++ + F+ L
Sbjct: 514 HFPLLCPPEPWLGVNKGAYLERSTPFLSGF------DQLQQTILQNAHLQGKLDSAFKCL 567
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
D +G T W +N +LSV + G +D IP K + EV K
Sbjct: 568 DQMGKTAWSINPDLLSVFNKVMEIP---QGFLD-----IPPK-----VIEVSS------K 608
Query: 554 AKKINQERHSQRCDTE-LKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+K+ + R + E +K+ ++ + Y+ + DFRGR YP+ P L H D+ R
Sbjct: 609 SKQEIIDIKGLRSNFETVKMLANAFGRNGDMLYHCYVFDFRGRVYPLSP-LTHYGGDLTR 667
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+ +F G+PLG +G W+K L ++F GG D F +N + EI DSA +P++
Sbjct: 668 SLFQFWHGQPLGANGFYWIKYQLMSVFGGGT-----DCEQFFNQNRV-EIIDSAVDPLH- 720
Query: 673 SRWWLTAEDPFQCLAACINLSEALK-----SSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+RWW+ A++PF L+ CI + + L+ S + LPIHQDGSCNGLQHYAAL
Sbjct: 721 NRWWMKADEPFSALSVCIEIRKILQFLEQGKGSIEEYVCRLPIHQDGSCNGLQHYAALAA 780
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVH-EIMKRDSNKDPSKHPQALLAKILIDQVDRKL 786
+ L AVNLV + DVYS + V +I+ NK K A+ ++ +DRKL
Sbjct: 781 DGLGGKAVNLVPMDTKQDVYSTVRDIVECKIIDDVENKLLEKDRDH--AEFMLKILDRKL 838
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEE 813
+K+ VMT+VYGVT GA QI +E+
Sbjct: 839 IKRPVMTTVYGVTLAGASRQILENIEK 865
>gi|414090089|ref|YP_006990207.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
gi|409995511|gb|AFV51444.1| DNA-directed RNA polymerase [Stenotrophomonas phage IME15]
Length = 883
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 178/674 (26%), Positives = 303/674 (44%), Gaps = 99/674 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKEL-EAKMIEKRLAPN----------LPHIKGLFLGWFGP 226
L R Q+ E EA+E ++++ E ++ +A N LP + WF
Sbjct: 32 LAREQLALEHEAYEMGEARFRKIFERQLKAGEVADNAAAKPLVATLLPKMIERIHAWF-- 89
Query: 227 LSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
E+ + K+ A+ E+ P + +A I + ++G + + E VQ +A
Sbjct: 90 -------EEVSAKRGKRPTAFKFLQEVKP-EAIAYITIKTVLGTLTSA-EQTTVQAAASA 140
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVME 344
V G AIE E R + + +K + +E L KRV + K +V+E
Sbjct: 141 V--GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFLQVVE 187
Query: 345 A----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRH 399
A + L+ E W ++ +G R +E+LIE T V A D
Sbjct: 188 ADMLSKGLMGGEAWSSWHKEDSIHVGVRCIEMLIEATGLVVLERQNAGVVGADAET---- 243
Query: 400 RFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYL 459
++ T+ + P+ Y P +VPPK W GGY
Sbjct: 244 -LSLASEYADAIATRAGALAGISPM---------------YQPCVVPPKPWTTVTGGGYW 287
Query: 460 F---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI-- 514
P ++RTHG + AL M +V++A++ ST W++NK+VL+V I
Sbjct: 288 ANGRRPLALVRTHGKK----ALMRYEDVYMPEVYKAVNLAQSTAWKINKKVLAVANEITK 343
Query: 515 W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL 572
W +I ++R ++ + + E+ + WK + + ++ R S+R E L
Sbjct: 344 WKHCPVEDIPA-IEREELPVKPDDIDENPEALTNWKRAAAAVYRKDKARKSRRLSLEFML 402
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+ +GK G WLK
Sbjct: 403 EQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGLLTLAKGKAIGKEGFYWLK 461
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH AN GV+K+ R+ F+E++ I SA+NP+ + WW + PF LA C
Sbjct: 462 IHGAN--CAGVDKVPFPERIKFIEDNHEHIMASAKNPLEYT-WWAEQDSPFCFLAFCFEY 518
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ + ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A
Sbjct: 519 AGVMHHGLSYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAK 576
Query: 753 RVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTVMT 793
+V+EIM+RD ++K + + L + L +R + K++VMT
Sbjct: 577 KVNEIMQRDVISGTDDELVTETDKTTGEITEKAVLGTRTLAGQWLAYGANRSVTKRSVMT 636
Query: 794 SVYGVTFVGAREQI 807
YG G R+Q+
Sbjct: 637 LAYGSKEFGFRQQV 650
>gi|269838910|ref|YP_003324580.1| RNA polymerase [Morganella phage MmP1]
gi|265232571|gb|ACY74627.1| RNA polymerase [Morganella phage MmP1]
Length = 883
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 161/593 (27%), Positives = 279/593 (47%), Gaps = 67/593 (11%)
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIH 300
K +K H++ + + +A I + ++ +AG +D +Q + A IG +IE E R
Sbjct: 99 KGRKPIAYTHLKDIKPETLAFITIKVVLN-KLAGKDDAFMQPL--AYAIGSSIEDEARFG 155
Query: 301 SFLEKTKNYKRKKIIADTEEVLSKEK-ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359
E + +K EE L+K + RK S++++ M + LL E W +
Sbjct: 156 RIRELEMAHFKKC----AEENLNKRRGTAYRKAFLSVVEAD--MLDKGLLGGESWGTWNK 209
Query: 360 DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
+G ++E LIE + ++ D R ++ T+ +
Sbjct: 210 TDVMNIGISMLEKLIEATGLVELREKRNFEEMD-------RIVIAEEYVKAMATRAQSLA 262
Query: 420 ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQE 476
P+ Y P +VPPK W GGY P+ ++RTH +RK
Sbjct: 263 GISPM---------------YQPCVVPPKPWVSITGGGYWANGRKPTALIRTH-TRK--- 303
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN-IAGLVDRNDVLIPEK 535
AL M +V++A++ T WR+N++VL+V+ + N + + + + +P++
Sbjct: 304 ALYRYEDVYMPEVYKAINYAQETPWRINRKVLAVVNELVKWKNNPVKDMPSIDKLELPQR 363
Query: 536 PLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFR 593
P D E ++ WK + +++R S+ L A + +++ Y+P+N+D+R
Sbjct: 364 PDDIDTNEEALRSWKREAAAVYRKDEQRKSRYLSMSFALEQANKFSNKKAIYFPYNMDWR 423
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLA 653
GR Y + P N +D+ +G+L A+G+P+GK G WLKIH AN + GV+K++ R+
Sbjct: 424 GRVYAL-PMFNPQGNDMVKGLLTLAKGKPIGKDGFYWLKIHGAN--TAGVDKVTFPERIK 480
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
F+E++ I AE+P++ + WW + PF LA C ++ K + LPI D
Sbjct: 481 FIEDNHDNIMQCAESPLD-NLWWTEQDSPFCFLAFCFEYAQVTKKG--LGWVCSLPIALD 537
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR----------DSN 763
GSC+G+QH++A+ R+ + AVNL+ E D+Y +A +V+E +K D+
Sbjct: 538 GSCSGIQHFSAMLRDDIGGRAVNLLPSETVQDIYGIVADKVNEALKELVINGTDNYTDTV 597
Query: 764 KDPSK---------HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
D S + L + L V R + K++VMT YG G R+Q+
Sbjct: 598 TDKSTGEIIERYRLGEKELARQWLEFGVTRSVTKRSVMTLAYGSKEYGFRDQV 650
>gi|194100420|ref|YP_002003793.1| gp1 [Klebsiella phage K11]
gi|193201359|gb|ACF15837.1| gp1 [Klebsiella phage K11]
Length = 906
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 186/690 (26%), Positives = 321/690 (46%), Gaps = 108/690 (15%)
Query: 178 LRRRQVKQETEAWERMVDEY-KELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIE---R 233
L R Q+ E EA+E + K LE ++ A N K L L L++ I+
Sbjct: 32 LAREQLALEHEAYELGEQRFLKMLERQVKAGEFADNAA-AKPLVLTLHPQLTKRIDDWKE 90
Query: 234 EQKMQRTKKQKAAY------------APHIELL------PADKVAVIVMHKMMGLVMAGH 275
EQ R KK +A Y + E+L ++ +A++ + ++G +
Sbjct: 91 EQANARGKKPRAYYPIKHGVASKLAVSMGAEVLKEKRGVSSEAIALLTIKVVLGTLTDAS 150
Query: 276 EDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNS 335
+ + Q + +G A+E E R E+ Y +K + + L KRV
Sbjct: 151 K---ATIQQVSSQLGKALEDEARFGRIREQEAAYFKKNV-----------ADQLDKRVGH 196
Query: 336 LIKSK--RVMEA----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADY 388
+ K +V+EA + +L + W D Q +G++L+ELLIE T V+ N
Sbjct: 197 VYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMAD 256
Query: 389 SPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLV 445
DV +V+ P +E L + A + + P + P +V
Sbjct: 257 GSDDV--------------------TSMQMVQLAPAFVELLSKRAGALAGISPMHQPCVV 296
Query: 446 PPKKWKGYNKGGYLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY + P ++RTH + AL+ M +V++A++ +T W+
Sbjct: 297 PPKPWVETVGGGYWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWK 352
Query: 503 VNKQVLSVLESI--W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--K 556
VNK+VL+V+ I W G++ ++R + +P +P D EV + W A +
Sbjct: 353 VNKKVLAVVNEIVNWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYR 409
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
++ R S+R E ++ A + + + ++P+N+D+RGR Y + N +D+ +G+L
Sbjct: 410 KDKARQSRRLSMEFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGMLT 468
Query: 617 FAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
A+G+P+G G WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW
Sbjct: 469 LAKGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WW 525
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
+ PF LA C + ++ LP+ DGSC+G+QH++A+ R+++ AVN
Sbjct: 526 TQQDSPFCFLAFCFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVN 583
Query: 737 LVAGEKPADVYSEIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKI 777
L+ + D+Y +A +V+E++ ++ ++K+ + + L A+
Sbjct: 584 LLPSDTVQDIYKIVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQW 643
Query: 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L V RK+ K++VMT YG G R+Q+
Sbjct: 644 LQYGVTRKVTKRSVMTLAYGSKEFGFRQQV 673
>gi|211939287|pdb|3E2E|A Chain A, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 7nt Of Rna
gi|211939296|pdb|3E3J|C Chain C, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
gi|211939297|pdb|3E3J|B Chain B, Crystal Structure Of An Intermediate Complex Of T7 Rnap
And 8nt Of Rna
Length = 889
Score = 199 bits (505), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 186/681 (27%), Positives = 306/681 (44%), Gaps = 113/681 (16%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 38 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 93
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 94 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 147
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 148 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 196
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQ-HPVNPA----DYSPPDVRPAF 397
+ LL E W ++ +G R +E+LIE T V H N D ++ P +
Sbjct: 197 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVVGQDSETIELAPEY 256
Query: 398 RHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGG 457
T R G + L+ + P +VPPK W G GG
Sbjct: 257 AEAIAT-----------RAGALAGISLMFQ--------------PCVVPPKPWTGITGGG 291
Query: 458 YLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RTH + AL M +V++A++ +T W++NK+VL+V I
Sbjct: 292 YWANGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVI 347
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDT 568
W +I ++R + +P KP DM + WK + + ++ R S+R
Sbjct: 348 TKWKHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISL 404
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G
Sbjct: 405 EFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGY 463
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA
Sbjct: 464 YWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAF 520
Query: 689 CINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
C + H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D
Sbjct: 521 CFEYA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQD 575
Query: 746 VYSEIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKL 786
+Y +A +V+EI++ D+ +AL + L V R +
Sbjct: 576 IYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSV 635
Query: 787 VKQTVMTSVYGVTFVGAREQI 807
K++VMT YG G R+Q+
Sbjct: 636 TKRSVMTLAYGSKEFGFRQQV 656
>gi|3891671|pdb|1ARO|P Chain P, T7 Rna Polymerase Complexed With T7 Lysozyme
Length = 883
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 184/677 (27%), Positives = 306/677 (45%), Gaps = 105/677 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +VPPK W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 V-SGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKL 572
S ++R + +P KP DM + WK + + ++ R S+R E L
Sbjct: 345 KHSPVEDIPAIEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFML 402
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLK
Sbjct: 403 EQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLK 461
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
IH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 462 IHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEY 518
Query: 693 SEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSE 749
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 519 A-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGI 573
Query: 750 IAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQT 790
+A +V+EI++ D+ +AL + L V R + K++
Sbjct: 574 VAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRS 633
Query: 791 VMTSVYGVTFVGAREQI 807
VMT YG G R+Q+
Sbjct: 634 VMTLAYGSKEFGFRQQV 650
>gi|216012|gb|AAA32569.1| RNA polymerase [Enterobacteria phage T7]
Length = 883
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 181/673 (26%), Positives = 309/673 (45%), Gaps = 97/673 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + HR +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNAGVVGQ 239
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
+T +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 240 DSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
+I ++R + +P KP DM + WK + + ++ R S+R E L A
Sbjct: 350 EDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDRARKSRRISLEFMLEQAN 406
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH A
Sbjct: 407 KFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGA 465
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
N GV+K+ R+ F+E + I A++P+ + WW + PF LA C +
Sbjct: 466 N--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA--- 519
Query: 697 KSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A +
Sbjct: 520 --GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKK 577
Query: 754 VHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTS 794
V+EI++ D+ +AL + L V R + K++VMT
Sbjct: 578 VNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAHGVTRSVTKRSVMTL 637
Query: 795 VYGVTFVGAREQI 807
YG G R+Q+
Sbjct: 638 AYGSKEFGFRQQV 650
>gi|385867953|gb|AFI93668.1| T7 RNA polymerase [Binary vector pVCPGUS(I)23010]
gi|385867959|gb|AFI93673.1| T7 RNA polymerase [Binary vector pVCPGUS23010]
Length = 884
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 184/678 (27%), Positives = 307/678 (45%), Gaps = 107/678 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 33 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 88
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 89 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 142
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 143 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 191
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 192 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 237
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +VPPK W G GGY
Sbjct: 238 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 289
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 290 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 345
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 346 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 402
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 403 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 461
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 462 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 518
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 519 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 573
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 574 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 633
Query: 790 TVMTSVYGVTFVGAREQI 807
+VMT YG G R+Q+
Sbjct: 634 SVMTLAYGSKEFGFRQQV 651
>gi|9627432|ref|NP_041960.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|251784243|ref|YP_002998547.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253774277|ref|YP_003037108.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254287609|ref|YP_003053357.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|12643995|sp|P00573.2|RPOL_BPT7 RecName: Full=DNA-directed RNA polymerase
gi|2781155|pdb|4RNP|A Chain A, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781156|pdb|4RNP|B Chain B, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|2781157|pdb|4RNP|C Chain C, Bacteriophage T7 Rna Polymerase, High Salt Crystal Form,
Low Temperature Data, Alpha-Carbons Only
gi|5107544|pdb|1CEZ|A Chain A, Crystal Structure Of A T7 Rna Polymerase-T7 Promoter
Complex
gi|7245970|pdb|1QLN|A Chain A, Structure Of A Transcribing T7 Rna Polymerase Initiation
Complex
gi|27065076|pdb|1H38|A Chain A, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065077|pdb|1H38|B Chain B, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065078|pdb|1H38|C Chain C, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065079|pdb|1H38|D Chain D, Structure Of A T7 Rna Polymerase Elongation Complex At
2.9a Resolution
gi|27065724|pdb|1MSW|D Chain D, Structural Basis For The Transition From Initiation To
Elongation Transcription In T7 Rna Polymerase
gi|46015618|pdb|1S0V|A Chain A, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015619|pdb|1S0V|B Chain B, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015620|pdb|1S0V|C Chain C, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|46015621|pdb|1S0V|D Chain D, Structural Basis For Substrate Selection By T7 Rna
Polymerase
gi|47169080|pdb|1S76|D Chain D, T7 Rna Polymerase Alpha Beta Methylene Atp Elongation
Complex
gi|47169084|pdb|1S77|D Chain D, T7 Rnap Product Pyrophosphate Elongation Complex
gi|431189|emb|CAA24390.1| unnamed protein product [Enterobacteria phage T7]
gi|37956644|gb|AAP33914.1| gene 1 [Enterobacteria phage T7]
gi|45861229|gb|AAS78492.1| T7 RNA polymerase [Cloning vector pPRCG]
gi|45861242|gb|AAS78503.1| T7 RNA polymerase [Cloning vector pTCCR-Auto]
gi|71534851|gb|AAZ32820.1| protein 1 [Enterobacteria phage T7.1]
gi|125743113|gb|ABN54763.1| T7 RNA polymerase [Expression vector pR6K-lys-Gm]
gi|125743121|gb|ABN54770.1| T7 RNA polymerase [Expression vector pUC19-T7pol-lacI-lys]
gi|125743124|gb|ABN54772.1| T7 RNA polymerase [Expression vector pBT20-Dbla-T7pol]
gi|194021543|gb|ACF32352.1| T7 DNA-directed RNA polymerase [Enterobacteria phage DE3]
gi|226440714|gb|ACO57213.1| RNA polymerase [Enterobacteria phage T7]
gi|242376516|emb|CAQ31221.1| enterobacteria phage T7 RNA polymerase [Escherichia coli BL21(DE3)]
gi|253325321|gb|ACT29923.1| DNA-directed RNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253976916|gb|ACT42586.1| T7 DNA-directed RNA polymerase [Escherichia coli BL21(DE3)]
gi|265524972|gb|ACY75835.1| T7 RNA polymerase [Enterobacteria phage T7]
gi|283825308|gb|ADB43112.1| T7 RNA polymerase [Expression vector pCAGGS-T7]
gi|299008115|gb|ADJ00046.1| T7 RNA polymerase [T7RNA polymerase vector pGemT7cat]
gi|299008117|gb|ADJ00047.1| T7 RNA polymerase [Mariner mini-transposon delivery vector
pMaT7cat]
Length = 883
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 184/678 (27%), Positives = 307/678 (45%), Gaps = 107/678 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQI 807
+VMT YG G R+Q+
Sbjct: 633 SVMTLAYGSKEFGFRQQV 650
>gi|385663996|gb|AFI71020.1| T7* RNAP [Cloning vector SBa_000560]
Length = 885
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 184/678 (27%), Positives = 307/678 (45%), Gaps = 107/678 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 34 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 89
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 90 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 143
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 144 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 192
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 193 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 237 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 290
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 291 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 346
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 347 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 403
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 404 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 462
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 463 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 519
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 520 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 574
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 575 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 634
Query: 790 TVMTSVYGVTFVGAREQI 807
+VMT YG G R+Q+
Sbjct: 635 SVMTLAYGSKEFGFRQQV 652
>gi|150261381|pdb|2PI4|A Chain A, T7rnap Complexed With A Phi10 Protein And Initiating Gtps.
gi|150261384|pdb|2PI5|A Chain A, T7 Rna Polymerase Complexed With A Phi10 Promoter
Length = 878
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 181/673 (26%), Positives = 309/673 (45%), Gaps = 97/673 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 27 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 82
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 83 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 136
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 137 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 190
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + R +
Sbjct: 191 LGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGVV---- 232
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
GQ + +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 233 GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 288
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 344
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
+I ++R + +P KP DM + WK + + ++ R S+R E L A
Sbjct: 345 EDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQAN 401
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH A
Sbjct: 402 KFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGA 460
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
N GV+K+ R+ F+E + I A++P+ + WW + PF LA C +
Sbjct: 461 N--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA--- 514
Query: 697 KSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A +
Sbjct: 515 --GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKK 572
Query: 754 VHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTS 794
V+EI++ D+ +AL + L V R + K++VMT
Sbjct: 573 VNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTL 632
Query: 795 VYGVTFVGAREQI 807
YG G R+Q+
Sbjct: 633 AYGSKEFGFRQQV 645
>gi|441463322|gb|AGC35603.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph02]
gi|441463383|gb|AGC35663.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph03]
Length = 812
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 173/640 (27%), Positives = 294/640 (45%), Gaps = 79/640 (12%)
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
+R ++ Y++ + ++ + L + PL+EA+E ++ A H
Sbjct: 3 QRGIEAYRKAKEAALDGGRGSETGFARRLMDEYIQPLTEALEAAIVPRKGPGYAARAHVH 62
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ + +DK + + + + + V A G IE EIR F ++ K Y
Sbjct: 63 LRGIASDKAIFLTLRCIFNAFQNSRQGKEATPVSIANVCGRLIEDEIRFSKFQQQFKAY- 121
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLV 370
++I AD + SK+ + RV+ + KPW + +G RL+
Sbjct: 122 YQEIAADFKRKGSKDYRYMH----------RVLTHSANSHEDGWKPWSVSERVDVGMRLL 171
Query: 371 ELLIETAYVQHP--VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+L+ VQH + +Y R+ I+ P T + ++
Sbjct: 172 DLV-----VQHTDLIEKGEYK--------RNGQTIIVIRPTDATLE----------FIQK 208
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVT 482
D A+ + +P ++ P W ++GGY + P+ V+ H KQ++ L+
Sbjct: 209 YDEVAELIHPRQMPCIIKPDDWTAIDQGGY-YSPTLRSACHLVLTRH--PKQKKILRRAD 265
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLS--- 538
+ V +A++ S +W+VNK+VL VL+ +W N+ V ++ L+P E P+
Sbjct: 266 ---LSSVMQAVNGAQSVEWKVNKKVLEVLKLVWAK--NLQVGVPSSEKLVPSECPIKDKK 320
Query: 539 -EDMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE----EGFYYPH 588
E+MT+ + +WK R+A ++ R +R +++ R +E + F+Y
Sbjct: 321 KEEMTDAEALVFMEWK---RQASEVYT-REKERIGKCFQITSILRAANEYSLYDRFWYVW 376
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
LDFRGR Y + DV +G+L FA G+PLG G+ WLK+HLAN + G +K +
Sbjct: 377 QLDFRGRLYTATSGFSPQGPDVAKGLLTFAGGKPLGSRGVYWLKVHLANRY--GFDKGHY 434
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA----LKSSSPHSV 704
D R+ +V+ +A +PI W A+ P+Q LAA E L P
Sbjct: 435 DERVQWVDQRHNAFIAAAADPIAHIDVWKDADKPYQFLAALFEYKEMHDGRLVGKRPEEY 494
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-- 762
IS+LPI DGSCNGLQH++A+ R+ + AA NLVA E+P D+Y+++A + +K++S
Sbjct: 495 ISYLPIGLDGSCNGLQHFSAMLRDPVGGAATNLVAAERPNDIYAQVAQVCLDKVKKESIA 554
Query: 763 NKDPSKHPQ---ALLAKILIDQVDRKLVKQTVMTSVYGVT 799
D S + + ++ RK+ K+ VMT YG T
Sbjct: 555 GSDVSAVATEWVSFAVRYGDGKMPRKVAKRPVMTMPYGST 594
>gi|133450|sp|P18147.1|RPOL_BPK11 RecName: Full=DNA-directed RNA polymerase
gi|14985|emb|CAA37330.1| unnamed protein product [Enterobacteria phage K11]
Length = 906
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 158/558 (28%), Positives = 271/558 (48%), Gaps = 82/558 (14%)
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA 345
+G A+E E R E+ Y +K + + L KRV + K +V+EA
Sbjct: 160 QLGKALEDEARFGRIREQEAAYFKKNV-----------ADQLDKRVGHVYKKAFMQVVEA 208
Query: 346 ----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHR 400
+ +L + W D Q +G++L+ELLIE T V+ N DV
Sbjct: 209 DMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMADGSDDV------- 261
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
T ++ +V+ P +E L + A + + P + P +VPPK W GG
Sbjct: 262 --TSMQ-----------MVQLAPAFVELLSKRAGALAGISPMHQPCVVPPKPWVETVGGG 308
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y + P ++RTH + AL+ M +V++A++ +T W+VNK+VL+V+ I
Sbjct: 309 YWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEI 364
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDT 568
W G++ ++R + +P +P D EV + W A + ++ R S+RC
Sbjct: 365 VNWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRCRC 421
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E ++ A + + + ++P+N+D+RGR Y + N +D+ +G L A+G+P+G G
Sbjct: 422 EFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGSLTLAKGKPIGLDGF 480
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW + PF LA
Sbjct: 481 YWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WWTQQDSPFCFLAF 537
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C + ++ LP+ DGSC+G+QH++A+ R+++ AVNL+ + D+Y
Sbjct: 538 CFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYK 595
Query: 749 EIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKILIDQVDRKLVKQ 789
+A +V+E++ ++ ++K+ + + L A+ L V RK+ K+
Sbjct: 596 IVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQWLQYGVTRKVTKR 655
Query: 790 TVMTSVYGVTFVGAREQI 807
+VMT YG R+Q+
Sbjct: 656 SVMTLAYGSKESLVRQQV 673
>gi|441463685|gb|AGC35961.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph08]
gi|441463740|gb|AGC36015.1| putative DNA-dependent RNA polymerase protein [Rhizobium phage
RHEph09]
Length = 812
Score = 195 bits (496), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 171/640 (26%), Positives = 294/640 (45%), Gaps = 79/640 (12%)
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
+R ++ Y++ + ++ + L + PL+EA+E ++ A H
Sbjct: 3 QRGIEAYRKAKEAALDGGRGSETGFARRLMDEYIQPLTEALEAAIVPRKGPGYAARAHVH 62
Query: 251 IELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYK 310
+ + +DK + + + + + V A G +E EIR F ++ K Y
Sbjct: 63 LRGIASDKAIFLTLRCIFNAFQNSRQGKEATPVSIANVCGRLVEDEIRFSKFQQQFKAY- 121
Query: 311 RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLV 370
++I AD + SK+ + RV+ + KPW + +G RL+
Sbjct: 122 YQEIAADFKRKGSKDYRYMH----------RVLTHSANSHEDGWKPWSVSERVDVGMRLL 171
Query: 371 ELLIETAYVQHP--VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEG 428
+L+ VQH + +Y R+ I+ P T + ++
Sbjct: 172 DLV-----VQHTDLIEKGEYK--------RNGQTIIVIRPTDATLE----------FIQK 208
Query: 429 LDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSY------VMRTHGSRKQQEALKSVT 482
D A+ + +P ++ P W ++GGY + P+ V+ H KQ++ L+
Sbjct: 209 YDEVAELIHPRQMPCIIKPDDWTAIDQGGY-YSPTLRSACHLVLTRH--PKQKKILRRAD 265
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP-EKPLS--- 538
+ V +A++ S +W+VNK+VL VL+ +W N+ V ++ L+P E P+
Sbjct: 266 ---LSSVMQAVNGAQSVEWKVNKKVLEVLKLVWAK--NLQVGVPSSEKLVPSECPIKDKK 320
Query: 539 -EDMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE----EGFYYPH 588
E+MT+ + +WK R+A ++ R +R +++ R +E + F+Y
Sbjct: 321 KEEMTDAEALVFMEWK---RQASEV-YTREKERIGKCFQITSILRAANEYSLYDRFWYVW 376
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSH 648
LDFRGR Y + DV +G+L FA G+PLG G+ WLK+HLAN + G +K +
Sbjct: 377 QLDFRGRLYTATSGFSPQGPDVAKGLLTFAGGKPLGSRGVYWLKVHLANRY--GFDKGHY 434
Query: 649 DGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA----LKSSSPHSV 704
D R+ +V+ +A +PI W A+ P+Q LAA E L P
Sbjct: 435 DERVQWVDQRHNAFIAAAADPIAHIDIWKDADKPYQFLAALFEYKEMHDGRLVGKRPEEY 494
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDS-- 762
+S+LPI DGSCNGLQH++A+ R+ + AA NLVA E+P D+Y+++A + +K++S
Sbjct: 495 LSYLPIGLDGSCNGLQHFSAMLRDPVGGAATNLVAAERPNDIYAQVAQVCLDKVKKESIA 554
Query: 763 NKDPSKHPQ---ALLAKILIDQVDRKLVKQTVMTSVYGVT 799
D S + + ++ RK+ K+ VMT YG T
Sbjct: 555 GSDVSAVATEWVSFAVRYGDGKMPRKVAKRPVMTMPYGST 594
>gi|282857708|ref|ZP_06266917.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
gi|282584378|gb|EFB89737.1| DNA-directed RNA polymerase [Pyramidobacter piscolens W5455]
Length = 868
Score = 195 bits (495), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 133/418 (31%), Positives = 211/418 (50%), Gaps = 39/418 (9%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALD 494
Y+P+ +PP+ W GGY LP +++ Q+E L VFEA++
Sbjct: 259 YLPLPIPPRHWTNTQNGGYWTVYGGQLP--LVKNRNEAYQEEILNQPEQ--FATVFEAVN 314
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP-LSEDMTE---------- 543
T WR+N++V +VL + G +AGL + + +P P + E
Sbjct: 315 AAQDTAWRINQRVYTVLTELVHEGKAVAGLPSADKLPLPNCPKCGAKIVEGVKHECLQSP 374
Query: 544 --VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ WK R + N + QR + + +A + ++E FYY + DFRGR YP+
Sbjct: 375 EVLDSWKGLARAVYRKNAKAIGQRLRLGMSMEIAALLLNDERFYYVYQTDFRGRLYPVG- 433
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
+L +D +G+LEFA+G PLG G +WL +H+AN + G +K+ +D R+ + +++
Sbjct: 434 NLTPQGTDWEKGILEFADGVPLGAHGAKWLAVHVANCW--GNDKVDYDERVQWAKDNTQW 491
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I D A P+ R W A+ PF LAACI + + +SH P+ DGSC+G+QH
Sbjct: 492 IRDCANEPLI-HREWTEADSPFMFLAACIEWDGYCREGDGY--LSHTPVGLDGSCSGIQH 548
Query: 722 YAALGRNTLEAAAVN---LVAGEKPADVYSEIAVRVHEIMKRD---SNKDPSKHPQALLA 775
Y+A+ R+ + A A N L K +D+Y +A + + D ++ D +K+ LLA
Sbjct: 549 YSAMLRDEVGAIATNVKCLPNQHKKSDIYGLVAEEAVKQFREDATGADADKAKYAMFLLA 608
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAA 831
L+ DRK+ K+ VMT YG TF ARE + L E+ I D +++ + YAA
Sbjct: 609 HNLM---DRKITKRAVMTLPYGSTFQTAREYVCEALSERTEIEQYDTKEVKSLLMYAA 663
>gi|89148148|gb|ABD62817.1| mitochondrial single-subunit RNA polymerase [Rosculus sp. ATCC
50888]
Length = 1285
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 156/636 (24%), Positives = 272/636 (42%), Gaps = 162/636 (25%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIERE------- 234
Q+ E + + VDEY EL +M + A +L ++ L WF PL+E+IE+E
Sbjct: 109 QLNLEHTSITKAVDEYTELTEQMTKMGRASHLSPLQDHVLRWFKPLAESIEKEILDCRAK 168
Query: 235 --------------------------QKMQRTKKQKAAYA----------PHIELLPADK 258
K T +Q+ + P+I L +
Sbjct: 169 LAVLANNSGDGSSTNNDEDDNGDNEPTKGGNTAQQRQQLSAQLNDLKLILPYINQLKPTE 228
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADT 318
+ I +H+ + ++ + ++V+ ++ IG + E + N++R +
Sbjct: 229 LGCIALHETLSRIL--NAPNGMRVIDLSISIGRVVNTEANFLQLRQDRANFQRLRRYYPG 286
Query: 319 EEVLSKEKELLRKRVNS--------------------------LIKSKRVMEAQKLLK-- 350
++ ++++R+ VN+ + R + Q+L
Sbjct: 287 AKL---NEQVIRRAVNNQSKNNNDKDGDNNTSNNSNNQQMPNNMSTFNRYKDNQQLKSIG 343
Query: 351 ------------NEETKPWGRDTQAKLGSRLVELLIE--------TAYVQHPVNPADYSP 390
N E W QAK+GS L++ +++ T + H + +
Sbjct: 344 PNQPSDQYGYALNSENATWSDLVQAKVGSFLIKHMLQHHQLSKKLTQSLVHFTSVENQHQ 403
Query: 391 PDVR------------PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI 438
P + PAF + +++ H T + V VL + +
Sbjct: 404 PRLPTSANSTIQQIEVPAFTYEHRSVGNHYVGYITCHHDVRN----VLNSAHTDVSTLAV 459
Query: 439 PYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGS 498
+PM++PP+ W+ GGYL +PS ++R+ GSRKQ +A V + +K V E+L+ LG
Sbjct: 460 RLLPMVIPPRPWRSVRDGGYLSVPSSIIRSKGSRKQIDA---VVASDIKTVQESLNYLGR 516
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL--------------------- 537
W +N VLSV++ W GG +A + R D+ +P++P+
Sbjct: 517 VAWSINNHVLSVIDQAWDEGGGLASMPTRRDIPLPQQPVLNLLQYDEKKNRYFAPSAATI 576
Query: 538 -----SEDMTEVQKWKWSV---------------RKAKKINQ---ERHSQRCDTELKLSV 574
+E + + S R ++I+Q + HS RCD L+L+
Sbjct: 577 KAMTKNEGDVDTSDGQLSTSDQLVQQTQQWRQYQRDMQRISQHNADLHSLRCDLSLRLNQ 636
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIH 634
A+++ Y+P N+DFRGRAYP+ PHLNHL SD+ R +L F +PLG+ GL WL+ H
Sbjct: 637 AKQLTGNP-VYFPLNMDFRGRAYPIPPHLNHLGSDLARALLLFHHKKPLGEKGLYWLQAH 695
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
LA F GV+K+S D R+ ++E H++ + D+A+ P+
Sbjct: 696 LAAQF--GVDKVSFDDRVKYIEQHMHLVRDTAKRPM 729
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 107/170 (62%), Gaps = 20/170 (11%)
Query: 669 PINGSR-------WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
P++G R WW A++P+Q L+ C + A+ S +P + + LP+HQDGSCNGLQH
Sbjct: 809 PLDGERDVRAKLPWWQLADNPWQALSTCHEIINAIDSGNPATYETGLPVHQDGSCNGLQH 868
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
YAALGR+ + VNL +KP DVYS + V M++D + + +P LAK+L+
Sbjct: 869 YAALGRDYQGGSRVNLTKSDKPQDVYSHVLNEVKRRMEQDIKE--TNNP---LAKMLLPH 923
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRL--------EEKGHITDDRQL 823
+ RK+VKQTVMTSVYGVTF+GAR+QI ++L EE + D+Q+
Sbjct: 924 MARKVVKQTVMTSVYGVTFIGARDQILKQLRDLKDVPWEEASQLVMDQQV 973
>gi|326424965|ref|YP_004286187.1| putative RNA polymerase [Pseudomonas phage phi15]
gi|325048369|emb|CBZ41982.1| putative RNA polymerase [Pseudomonas phage phi15]
Length = 882
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 169/607 (27%), Positives = 284/607 (46%), Gaps = 76/607 (12%)
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
E +M+ +++ A I+++ ++VAVI + ++ + G D +Q + A IG I
Sbjct: 87 EHQMKNVRRKSVAL-KFIQMVATERVAVITIKTVINAMSQG--DVVLQAI--AGRIGRGI 141
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E+E R ++ + +K I E L+K KR R++EA +L N
Sbjct: 142 EEEARFGRIRDQEAKHFKKYI----REALNKRNGHTYKRAYMHAVEDRMLEAGEL--NGA 195
Query: 354 TKPWGRDTQ---AKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
W + A +G R +E LIE++ + VR I +
Sbjct: 196 WSDWDNEDPTIIAHIGLRCIEALIESSGL-------------VR---------ITRRSAG 233
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHML---IPYVPMLVPPKKWKGYNKGGYLF---LPSY 464
+ V+E +P +E L++ A + + P +VPP+ W GGY P+
Sbjct: 234 NVKEDCNVLELEPQWVEMLNQRAFTLAGVNTYHQPCVVPPRPWTRPVGGGYWGKGRRPTR 293
Query: 465 VMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN--IA 522
+R H ++AL+ M+ V++A++ +T W +NK++L V E++ S N I+
Sbjct: 294 FIRVH----NKKALERYRDVDMEAVYKAVNIAQNTAWSINKRILEVAEAL-ASWTNVPIS 348
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+P KP + E + WK + R S+R E L AR+ D
Sbjct: 349 KWPKAETQELPVKPHDIETNEEARNAWKKQASGVYRSESSRVSRRMSLETTLETARKFAD 408
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E Y+PHNLD+RGR Y + P N D+ +G+L+ ++G P+G+ G++WL IH AN +
Sbjct: 409 FEAIYFPHNLDWRGRVYAL-PVFNPQRDDLTKGLLQASKGEPVGEDGIKWLMIHGAN--T 465
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
GV+K+ D R +V ++ I AE+P+ + W ++ + PF LA C + +K
Sbjct: 466 AGVDKVPFDERQQWVRDNERTILQCAEDPLTHTEW-MSMDSPFCFLAFCFEWAGVVKDGP 524
Query: 701 PHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKR 760
H +S LPI DGSC+G+QH++A+ R+ AVNL+ E+ D+Y ++ V+ ++
Sbjct: 525 NH--VSALPIAFDGSCSGIQHFSAMLRDETGGRAVNLLPSERVQDIYRLVSDGVNAALRD 582
Query: 761 DS--NKDPSKH-----------------PQALLAKILIDQVDRKLVKQTVMTSVYGVTFV 801
D+ D S + L A L VDR + K++VMT YG
Sbjct: 583 DAVHGTDDSTDVHVDEKTGEITERRVLGTRTLAAAWLAHGVDRSVTKRSVMTLAYGSKEF 642
Query: 802 GAREQIK 808
G +Q++
Sbjct: 643 GFTDQVR 649
>gi|37956752|gb|AAP34020.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 179/673 (26%), Positives = 308/673 (45%), Gaps = 97/673 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNITVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + R +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGVV---- 237
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
GQ + +E P E + A + + P + P ++P K W G GGY P
Sbjct: 238 GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVIPSKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYENVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
+I ++R + +P KP DM + WK + + ++ R S+R + E L A
Sbjct: 350 EDIPA-IEREE--LPMKPKDIDMNPEALTAWKRAAAAVYRKDKARKSRRINLEFMLEQAN 406
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH A
Sbjct: 407 KFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGA 465
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
N GV+K+ R+ F+E + I A++P+ + WW PF LA C +
Sbjct: 466 N--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQNSPFCFLAFCFEYA--- 519
Query: 697 KSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A +
Sbjct: 520 --GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKK 577
Query: 754 VHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTS 794
V+EI++ D+ +AL + L V R + K++VMT
Sbjct: 578 VNEILQADAINGTDNEVVTVTDENTGEISEKIKLGTKALAGQWLAYGVTRSVTKRSVMTL 637
Query: 795 VYGVTFVGAREQI 807
YG G R+Q+
Sbjct: 638 AYGSKEFGFRQQV 650
>gi|354544408|emb|CCE41131.1| hypothetical protein CPAR2_301200 [Candida parapsilosis]
Length = 1239
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 152/515 (29%), Positives = 233/515 (45%), Gaps = 72/515 (13%)
Query: 320 EVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV 379
E+ S + ++ V+ + KS + K + +++ KL S LV+ +IE+ +
Sbjct: 394 EIFSSMRTTFKRDVSLMKKSDHKSQLFKFISDDDFD--------KLSSILVKSVIESCMI 445
Query: 380 QHPVNPADYSPPDVRPAFRHR-----FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAK 434
VN DV F + TI P + T V+ +P++ + +
Sbjct: 446 SR-VNAEGSDADDVASGFTNEDFAFHLDTIYVSPVKSET----VINFNPVLKQKVTSIPV 500
Query: 435 HMLIPYVPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
+ P+L PP+ W G NKG Y+ FL + H + + L +
Sbjct: 501 GSNSHHFPLLCPPEPWLGVNKGAYMERNTPFLSGFDQLQHRILQNAQHLGK-----LDSA 555
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
F+ LD +G T W +N VLSV + G +D IP K E
Sbjct: 556 FKCLDQMGQTAWAINPDVLSVFNQVMELPN---GFLD-----IPPKHCDEST-------- 599
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRM-KDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
K+K+ + R + E +A ++ + Y+ + DFRGR YP+ P L H
Sbjct: 600 ---KSKQEIIDIKGLRSNFETVNMLANTFDRNGDMLYHCYVFDFRGRVYPLSP-LTHYGG 655
Query: 609 DVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG--GVEKLSHDGRLAFVENHLYEIFDSA 666
D+ R + +F G+PLG +G W+K L ++F EK F ++ +I SA
Sbjct: 656 DLTRSLFQFWYGQPLGVNGFYWVKYQLMSVFGNETDCEK--------FYNHNKEQILASA 707
Query: 667 ENPINGSRWWLTAEDPFQCLAACINLSEALK-----SSSPHSVISHLPIHQDGSCNGLQH 721
+P++ + WW+ A++PF L+ CI + + L+ S I LPIHQDGSCNGLQH
Sbjct: 708 SDPLH-NHWWMKADEPFSALSVCIEIQKILQFVQHGKGSIEEYICRLPIHQDGSCNGLQH 766
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK---DPSKHPQALLAKIL 778
YAAL + AVNLV + DVYS + V + + D + A + KIL
Sbjct: 767 YAALAADESGGKAVNLVPMDTKQDVYSTVKDIVEQKIIADVENRLMGEDRDHAAFMLKIL 826
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
DRKL+K+ VMT+VYGVT GA QI +E+
Sbjct: 827 ----DRKLIKRPVMTTVYGVTLAGASRQILENIED 857
>gi|37956700|gb|AAP33969.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 193 bits (490), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 179/673 (26%), Positives = 308/673 (45%), Gaps = 97/673 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNITVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + R +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGVV---- 237
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
GQ + +E P E + A + + P + P ++P K W G GGY P
Sbjct: 238 GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVIPSKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYENVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
+I ++R + +P KP DM + WK + + ++ R S+R + E L A
Sbjct: 350 EDIPA-IEREE--LPMKPKDIDMNPEALTAWKRAAAAVYRKDKARKSRRINLEFMLEQAN 406
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
+ + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH A
Sbjct: 407 KFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGA 465
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
N GV+K+ R+ F+E + I A++P+ + WW PF LA C +
Sbjct: 466 N--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQNSPFCFLAFCFEYA--- 519
Query: 697 KSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A +
Sbjct: 520 --GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKK 577
Query: 754 VHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTS 794
V+EI++ D+ +AL + L V R + K++VMT
Sbjct: 578 VNEILQADAINGTDNEVVTVTDENTGEISEKIKLGTKALAGQWLAYGVTRSVTKRSVMTL 637
Query: 795 VYGVTFVGAREQI 807
YG G R+Q+
Sbjct: 638 AYGSKEFGFRQQV 650
>gi|194100470|ref|YP_002003315.1| gp1 [Yersinia phage Yepe2]
gi|193201203|gb|ACF15684.1| gp1 [Yersinia phage Yepe2]
gi|387941867|gb|AFK13447.1| DNA-directed RNA polymerase [Yersinia phage YpP-G]
Length = 883
Score = 192 bits (487), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 172/589 (29%), Positives = 284/589 (48%), Gaps = 88/589 (14%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ +++E
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLE 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHR-FK 402
A +L T W + +G R++ELLI T V+ HR F
Sbjct: 194 AGQLHTKWTT--WTPEEVIHVGVRMLELLIGSTGLVE-----------------LHRPFA 234
Query: 403 TILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
++ G+ + T++Y ++ L + A + + P Y P +VPPK W GG
Sbjct: 235 GNIEKDGEYIQLTEQY---------VDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGG 285
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 286 YWAAGRKPLSMVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEI 341
Query: 515 WVSGGN--IAGLVDRNDVLIPEKPLSEDMTEV--QKWKWSVRKAKKINQERHSQRCDTEL 570
VS + +A + +P KP+ D EV + WK + + + R S+R E
Sbjct: 342 -VSWKHCPVADVPAMERGELPVKPVDIDTNEVALKAWKKAASAIYRKEKARVSRRMSMEF 400
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G W
Sbjct: 401 MLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGFYW 459
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA C
Sbjct: 460 LKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWTEQDSPFCFLAFCF 516
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y +
Sbjct: 517 EYAGVQHHGMNYN--CSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIYRIV 574
Query: 751 AVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTV 791
A RV+EI+ +D +NKD + + L + L V RK+ K++V
Sbjct: 575 AERVNEILNQDVINGTDNEVETLTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKV 833
MT YG G R+Q+ LE+ + I D + L AA Y AK+
Sbjct: 635 MTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKL 680
>gi|37956803|gb|AAP34070.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 184/678 (27%), Positives = 305/678 (44%), Gaps = 107/678 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ AA I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQA--AASAI 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + R
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGV 236
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ GQ + +E P E + A + + P + P +V PK W G GGY
Sbjct: 237 V----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVLPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
NI ++R + +P KP + DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVENIPA-IEREE--LPMKPENIDMNPEALIAWKRAAAAVYRKDKARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIIACAKSPLENT-WWAEQDSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH +A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHXSAMLRDEVGGRAVNLLPSETVXDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYSVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQI 807
+VMT YG G R+Q+
Sbjct: 633 SVMTLAYGSKEFGFRQQV 650
>gi|431811028|ref|YP_007238103.1| putative RNA polymerase [Xanthomonas phage CP1]
gi|394556921|dbj|BAM29105.1| putative RNA polymerase [Xanthomonas phage CP1]
Length = 804
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 175/646 (27%), Positives = 294/646 (45%), Gaps = 89/646 (13%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK 241
QV+ E +A+ + ++ A+ EK +A N P+ + ++ + PL++A++ EQ+ R K
Sbjct: 4 QVELELQAYSFGKERMEKAIARNEEKGVADNNPYAQAVYRRFVLPLADALKAEQQADRGK 63
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHS 301
+K A+ +E + + A + + + +M D + ++ +G A+ E+ +
Sbjct: 64 GRKPAHLKLLEAVDPEPSAFVAVRAALVHLMGNPADNALILLS---RVGSAVYHELLLRD 120
Query: 302 FLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR--VMEAQKLLKNEETKPWGR 359
F T + K +A+ E R V ++R V+ ++ E W
Sbjct: 121 F--DTLDPKLFHSLANGAGRNMYAGERYRLEVFKAEGARRGVVLPEWEMADIERVGAWFS 178
Query: 360 DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
D A LG L I T H+ + KH + T V
Sbjct: 179 DQLATLGM----LSIST----------------------HQLAS--KHSTMEATLSEEVT 210
Query: 420 ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQ 474
E +++G+ ++P + PK W+ Y++GG+ L Y ++TH +
Sbjct: 211 E----LIDGIRDEVVENAAYFLPCVEKPKDWESYDEGGWHTDQMRRLMPYAIKTHAGVRH 266
Query: 475 QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG--NIAGLVDRNDVLI 532
+ G + K L+TL +T+WR+N+++LSV+ + GG N+ ++ + +
Sbjct: 267 L-----LGGADLSKELACLNTLQATRWRINRRILSVMSRL---GGKINLGEVLAQGEEPR 318
Query: 533 PEKP-----------LSED-MTEVQKWK-----WSVRKAKKINQ-ERHSQRCDTELKLSV 574
P++P + ED + E + WK W RK K++ + R+ Q D V
Sbjct: 319 PDRPAWLLEKMEESQMDEDQLQEFRTWKRLMALWHARKKKRVTKWGRYRQAMD------V 372
Query: 575 ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR-WLKI 633
A R D E Y+ + DFRGR Y M ++ SD+ + +LEFAEG+PL G + W I
Sbjct: 373 ATRFADYENLYFVYFCDFRGRKYAMTTGVSPQGSDLQKALLEFAEGKPLHTKGAKDWFCI 432
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
AN + G +K+ R+ +V H I +A +P N S WWL A P Q LA C+
Sbjct: 433 TGANRY--GYDKVDLGSRIEWVHTHHEFILSAARDPAN-SEWWLQASKPLQFLAWCMEYR 489
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVR 753
+ + S SHL DGSCNGLQ+++A+ R+ + A NLV +P D+Y + +
Sbjct: 490 DWQEQGE--SFESHLSAGMDGSCNGLQNFSAMLRDEVGGEATNLVPLPQPQDIYGRVG-K 546
Query: 754 VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
V E + DP + LA V+R +VK++VMT YG T
Sbjct: 547 VTEQLLLQVPADPEGYRDRWLAH----GVNRSVVKRSVMTLPYGST 588
>gi|37956858|gb|AAP34124.1| gene 1 [Enterobacteria phage T7]
Length = 883
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 179/672 (26%), Positives = 306/672 (45%), Gaps = 95/672 (14%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ AA I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQA--AASAI 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + R +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSLHRQNAGVV---- 237
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
GQ + +E P E + A + + P + P +V PK W G GGY P
Sbjct: 238 GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVLPKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--WVSGG- 519
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 520 NIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARR 577
++R + +P KP + DM + WK + + ++ R S+R E L A +
Sbjct: 350 EYIPAIEREE--LPMKPENIDMNPEALIAWKRAAAAVYRKDKARKSRRISLEFMLEQANK 407
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
+ + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 408 FANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN 466
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALK 697
GV+K+ R+ F+E + I A++P+ + WW + PF LA C +
Sbjct: 467 --CAGVDKVPFPERIKFIEENHENIIACAKSPLENT-WWAEQDSPFCFLAFCFEYA---- 519
Query: 698 SSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +A +V
Sbjct: 520 -GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKV 578
Query: 755 HEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTSV 795
+EI++ D+ +AL + L V R + K++VMT
Sbjct: 579 NEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYSVTRSVTKRSVMTLA 638
Query: 796 YGVTFVGAREQI 807
YG G R+Q+
Sbjct: 639 YGSKEFGFRQQV 650
>gi|30387455|ref|NP_848264.1| RNA polymerase [Yersinia phage phiA1122]
gi|30314092|gb|AAP20500.1| RNA polymerase [Yersinia phage phiA1122]
gi|432142747|gb|AGB07325.1| RNA polymerase [Yersinia phage R]
Length = 883
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 176/671 (26%), Positives = 313/671 (46%), Gaps = 93/671 (13%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + VN HR +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIESTGM---VN-------------LHRQNAGVVGQ 239
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
+T +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 240 DSET------IELTPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
+I ++R ++ + + + + + WK + + ++ R S+R E L A +
Sbjct: 350 EDIPA-IEREELPMKPEDIDTNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKF 408
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 409 ANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN- 466
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 467 -CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA----- 519
Query: 699 SSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ D+Y +A +V+
Sbjct: 520 GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIYGIVAKKVN 579
Query: 756 EIMKRD------------SNKDPSKHPQ-------ALLAKILIDQVDRKLVKQTVMTSVY 796
I++ D ++++ + P+ AL + L V R + K++VMT Y
Sbjct: 580 VILQADVINGTDNEVVTVTDENTGEIPEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAY 639
Query: 797 GVTFVGAREQI 807
G G R+Q+
Sbjct: 640 GSKEFGFRQQV 650
>gi|119637750|ref|YP_918986.1| RNA polymerase [Yersinia phage Berlin]
gi|119391781|emb|CAJ70654.1| hypothetical protein [Yersinia phage Berlin]
gi|312436348|gb|ADQ83157.1| RNA polymerase [Yersinia phage Yep-phi]
Length = 883
Score = 190 bits (483), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 170/589 (28%), Positives = 282/589 (47%), Gaps = 88/589 (14%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHR-FK 402
A +L T W + +G R++ELLI T V+ HR F
Sbjct: 194 AGQLQTKWTT--WTPEEVIHVGVRMLELLIGSTGLVE-----------------LHRPFA 234
Query: 403 TILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
++ G+ + T++Y ++ L + A + + P Y P +VPPK W GG
Sbjct: 235 GNIEKDGEYIQLTEQY---------VDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGG 285
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 286 YWAAGRKPLSMVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEI 341
Query: 515 --WVSGGNIAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDTEL 570
W +A + +P KP+ D E ++ WK + + + R S+R E
Sbjct: 342 VNW-KHCPVADVPAMERGELPVKPVDIDTNEASLKAWKKAASAIYRKEKARVSRRMSMEF 400
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G W
Sbjct: 401 MLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGFYW 459
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN + GV+K+ R+ F+E++ I A +PI + WW + PF LA C
Sbjct: 460 LKIHGAN--TAGVDKVDFAERIKFIEDNHENIMSVAADPI-ANTWWTEQDSPFCFLAFCF 516
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y +
Sbjct: 517 EYAGVQHHGMNYN--CSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIYRIV 574
Query: 751 AVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQTV 791
A RV+EI+ +D +NKD + + L + L V RK+ K++V
Sbjct: 575 AERVNEILNQDVINGTDNEVETLTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKRSV 634
Query: 792 MTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKV 833
MT YG G R+Q+ LE+ + I D + L AA Y AK+
Sbjct: 635 MTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKL 680
>gi|194100364|ref|YP_002003938.1| gp1 [Enterobacteria phage 13a]
gi|193201411|gb|ACF15888.1| gp1 [Enterobacteria phage 13a]
Length = 883
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 174/671 (25%), Positives = 305/671 (45%), Gaps = 93/671 (13%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLA-CLTSVDNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + HR +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNAGVVGQ 239
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
+T +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 240 DSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
+I ++R ++ + + + + + WK + + ++ R S+R E L A +
Sbjct: 350 EDIPA-IEREELPMKPEDIDTNPDALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKF 408
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 409 ANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN- 466
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 467 -CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA----- 519
Query: 699 SSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ E D+Y +A +V+
Sbjct: 520 GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEIGGRAVNLLPSETVQDIYGIVAKKVN 579
Query: 756 EIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTSVY 796
I++ D +AL + L V R + K++VMT Y
Sbjct: 580 VILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAY 639
Query: 797 GVTFVGAREQI 807
G G R+Q+
Sbjct: 640 GSKEFGFRQQV 650
>gi|387941817|gb|AFK13398.1| DNA-directed RNA polymerase [Yersinia phage YpP-R]
Length = 883
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 175/671 (26%), Positives = 307/671 (45%), Gaps = 93/671 (13%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + VN HR +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIESTGM---VN-------------LHRQNAGVVGQ 239
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
+T +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 240 DSET------IELTPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 294 LALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
+I ++R ++ + + + + + WK + + ++ R S+R E L A +
Sbjct: 350 EDIPA-IEREELPMKPEDIDTNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKF 408
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 409 ANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN- 466
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 467 -CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA----- 519
Query: 699 SSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ D+Y +A +V+
Sbjct: 520 GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIYGIVAKKVN 579
Query: 756 EIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTSVY 796
I++ D +AL + L V R + K++VMT Y
Sbjct: 580 VILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAY 639
Query: 797 GVTFVGAREQI 807
G G R+Q+
Sbjct: 640 GSKEFGFRQQV 650
>gi|387941914|gb|AFK13493.1| DNA-directed RNA polymerase [Yersinia phage YpsP-G]
Length = 903
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 175/671 (26%), Positives = 308/671 (45%), Gaps = 93/671 (13%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 52 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 107
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 108 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 161
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 162 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSKGL 215
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + VN HR +
Sbjct: 216 LGGEAWSSWHKEDSIHVGVRCIEMLIESTGM---VN-------------LHRQNAGVVGQ 259
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
+T +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 260 DSET------IELTPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 313
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH ++AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 314 LALVRTH----SKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPV 369
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
+I ++R ++ + + + + + WK + + ++ R S+R E L A +
Sbjct: 370 EDIPA-IEREELPMKPEDIDTNPEALTAWKRAAAAVYRKDKARKSRRISLEFMLEQANKF 428
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WLKIH AN
Sbjct: 429 ANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGAN- 486
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
GV+K+ R+ F+E++ I A++P+ + WW + PF LA C +
Sbjct: 487 -CAGVDKVPFPERIKFIEDNHENIMACAKSPLENT-WWAEQDSPFCFLAFCFEYA----- 539
Query: 699 SSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
H +S+ LP+ DGSC+G+QH++A+ + + AVNL+ D+Y +A +V+
Sbjct: 540 GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLLDEVGGLAVNLLPSATVQDIYGIVAKKVN 599
Query: 756 EIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTVMTSVY 796
I++ D +AL + L V R + K++VMT Y
Sbjct: 600 VILQADVINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKRSVMTLAY 659
Query: 797 GVTFVGAREQI 807
G G R+Q+
Sbjct: 660 GSKEFGFRQQV 670
>gi|344170841|emb|CCA83277.1| DNA-directed RNA polymerase from phage [blood disease bacterium
R229]
Length = 795
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 162/610 (26%), Positives = 279/610 (45%), Gaps = 64/610 (10%)
Query: 212 NLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLV 271
N P+ +F W P+ + IE ++AA+ + L +A I + +
Sbjct: 13 NNPYSSAVFRRWLVPVRDMIEESVAATGKPGRRAAHVMLLRSLDPAAIAFIAVRSALTHT 72
Query: 272 MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRK 331
++G D + IG + E+ + +F E ++ D ++ SK R
Sbjct: 73 VSGGGDNARNL---GNDIGKGVYGELVLATF-EHINPELYWEVSHDLDKRRSKSS---RH 125
Query: 332 RVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ-HPVNPADYSP 390
R +L S + E E W + ++G LVEL+ E ++ V+ Y
Sbjct: 126 RYQTLRHSAQKAEI-------EVPYWSPSDRTQVGLWLVELMREVGLLEVQRVHETRYG- 177
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRY-GVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPK 448
+ R + +L + +R GVVE M +P+ P + PPK
Sbjct: 178 -----KHKERLEVMLSEEAAQIVQRIRGVVE---------------MTMPFHQPCIEPPK 217
Query: 449 KWKGYNKGGYLF------LPSYV-MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
W N GGY LP V MR R ++ + M V +A++ L +W
Sbjct: 218 DWVSVNDGGYHTQEMRRQLPHCVNMRRQHLRTMRDQIAKAD---MTNVLDAINHLQRVRW 274
Query: 502 RVNKQVLSVLESIWVS--GGNIAGLVDRNDVLIPEKPL----SEDMTEVQ-----KWKWS 550
+VN +L V+ ++ G + G + +PE ++DMTE Q +WK +
Sbjct: 275 QVNTDILDVVLALGKGRDSGEVVGQTWEDKPAVPEWLTPGMKADDMTEAQAEQFKQWKRA 334
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+ + N+ R + A + +D ++ + DFRGR Y M ++ SD+
Sbjct: 335 MAQWHTDNKARGIKWGRFYSATQTALKYRDYPAIHFVYQADFRGRLYAMTTGVSPQGSDM 394
Query: 611 CRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+ +L FA+G+PL + +RW KI+ AN + G++K++ + R+A+V+ H I A++P
Sbjct: 395 QKALLRFADGKPLEDTEAVRWFKINGANRY--GIDKVTFEERIAWVDAHEAMILRIADDP 452
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
++ W + P Q LA CI + +S P + +S +P+ DGSCNGLQH++A+ R++
Sbjct: 453 VSRHDDWKEVDSPLQFLAWCIEYARWRRS--PGTFVSRIPVGFDGSCNGLQHFSAMLRDS 510
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
+ AVNLV KP D+Y ++A V ++ + ++ + L+K L ++RKLVK+
Sbjct: 511 VGGRAVNLVPAGKPNDIYQQVADLVQRKLQAMDPETLAERDRPFLSKWLAHGMNRKLVKR 570
Query: 790 TVMTSVYGVT 799
+VMT YG T
Sbjct: 571 SVMTLPYGST 580
>gi|326536115|ref|YP_004300538.1| gp1 [Enterobacteria phage 285P]
gi|256861504|gb|ACV32460.1| gp1 [Enterobacteria phage 285P]
Length = 883
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 170/591 (28%), Positives = 284/591 (48%), Gaps = 92/591 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHR-FK 402
A +L T W + +G R++ELLI T V+ HR F
Sbjct: 194 AGQLQTKWTT--WTPEESIHVGVRMLELLIGSTGLVE-----------------LHRPFA 234
Query: 403 TILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
++ G+ + T++Y ++ L + A + + P Y P +VPPK W GG
Sbjct: 235 GNVEKDGEYIQLTEQY---------VDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGG 285
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 286 YWAAGRKPLSLVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEI 341
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQRCDT 568
W ++ L +R + +P KP D E ++ WK + + + R S+R
Sbjct: 342 VNWKHCPVEDVPAL-ERGE--LPVKPEDIDTNEASLKAWKKAASAIYRKEKARVSRRMSM 398
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G
Sbjct: 399 EFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGY 457
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA
Sbjct: 458 YWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFLAF 514
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C + ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y
Sbjct: 515 CFEYAGVQHHGMNYNC--SLPLAFDGSCSGIQHFSAMLRDEIGGRAVNLLPSKEVQDIYR 572
Query: 749 EIAVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQ 789
+A RV+EI+ +D +NKD + + L + L V RK+ K+
Sbjct: 573 IVAERVNEILNQDVINGTDNEVETVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKV 833
+VMT YG G R+Q+ LE+ + I D + L AA Y AK+
Sbjct: 633 SVMTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKL 680
>gi|71654288|ref|XP_815767.1| mitochondrial DNA-directed RNA polymerase [Trypanosoma cruzi strain
CL Brener]
gi|70880845|gb|EAN93916.1| mitochondrial DNA-directed RNA polymerase, putative [Trypanosoma
cruzi]
Length = 1022
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 130/207 (62%), Gaps = 3/207 (1%)
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
E+ S R L AR + Y+P+++DFRGR YP+ LNH SD R +LE+AE
Sbjct: 812 EQRSNRIHYLQALRQARSLVQFSHIYFPNSMDFRGRMYPLPGRLNHTGSDPFRALLEYAE 871
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTA 679
+PLG++GL WLK+HLAN G+ KLS D R+ +V H+ ++ SAE+P++G +WW A
Sbjct: 872 PKPLGETGLYWLKVHLANKM--GMSKLSFDERVHYVNEHIEDVVRSAESPLHGDKWWQEA 929
Query: 680 EDPFQCLAACINLSEALK-SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
+P QCL AC L++ALK S + +S +P+ DGS NGLQHY+A+GR+ A VNLV
Sbjct: 930 AEPMQCLMACKELTDALKCSQGAENYLSRIPVAVDGSYNGLQHYSAIGRDAFGAQLVNLV 989
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKD 765
E+PAD Y+ I + + D+ KD
Sbjct: 990 PSERPADAYTGILKEMMRSIMADAEKD 1016
>gi|326633044|ref|YP_004306655.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
gi|301170517|emb|CBV65202.1| predicted DNA-directed RNA polymerase [Salmonella phage Vi06]
Length = 883
Score = 186 bits (473), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 150/568 (26%), Positives = 262/568 (46%), Gaps = 75/568 (13%)
Query: 272 MAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLR 330
+ ++ VQ V +A IG AIE E R + ++ + K + EE L+K + +
Sbjct: 126 LTSMDNTTVQAVASA--IGRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYK 179
Query: 331 KRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSP 390
K +I++ M ++ LL E W ++ +G R +E+LIE+
Sbjct: 180 KAFMQVIEAD--MLSKGLLGGESWSSWHKEDSIHVGVRCIEMLIEST------------- 224
Query: 391 PDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPP 447
+ R + GQ + +E P E + A + + P + P +VPP
Sbjct: 225 -GMVSLHRQNAGVV----GQDSE----TIELAPEYAEAIATRAGALAGISPMFQPCVVPP 275
Query: 448 KKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
K W + GGY P ++RTH ++AL M +V++A++ +T WR+N
Sbjct: 276 KPWTSISGGGYWANGRRPLALVRTH----SKKALMRYADVYMPEVYKAVNIAQNTAWRIN 331
Query: 505 KQVLSVLESI--WVSGG-NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQER 561
K+VL+V + W + ++R ++ + + + + + WK + + ++ R
Sbjct: 332 KKVLAVANVVTKWKHCPVDYIPTIEREELPMKPEDIDTNPEALASWKRAAAAVYRKDKAR 391
Query: 562 HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGR 621
S+R E L A + + ++P+N+D+RGR Y + N +D+ +G+L A+G+
Sbjct: 392 KSRRMSLEFMLEQANKFANHRAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGK 450
Query: 622 PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAED 681
P+GK G WLKIH AN GV+K+ R+ F+E++ I A++P+ + WW +
Sbjct: 451 PIGKEGFYWLKIHGAN--CAGVDKVPFPERIKFIEDNHENILACAKSPLENT-WWSEQDS 507
Query: 682 PFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
PF LA C + H +S+ LP+ DGSC G+QH++ + R+ + AVNL+
Sbjct: 508 PFCFLAFCFEYA-----GGQHHGLSYNCSLPLAFDGSCFGIQHFSVMLRDEVGGRAVNLL 562
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILI 779
E D+Y +A +V+EI++ D + L + L
Sbjct: 563 PSETVQDIYGIVAKKVNEILQVDMINGTDNEVVTVTDDKTGEIYEKIKLGTKELAGQWLA 622
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQI 807
V R + K++VMT YG G R+Q+
Sbjct: 623 YGVTRSVTKRSVMTLAYGSKEFGFRQQV 650
>gi|326536914|ref|YP_004306321.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
gi|318054490|gb|ADV35666.1| RNA polymerase [Pseudomonas phage phiIBB-PF7A]
Length = 891
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 163/636 (25%), Positives = 295/636 (46%), Gaps = 88/636 (13%)
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
E +M + +++ A ++ ++ ++VA + + ++ + +D +V IG I
Sbjct: 89 EHQMTKVRRKSVAL-KYLNMVRPERVAALTIKLVITEMARQRQD----LVSVTTRIGRTI 143
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E+E R ++ + +K I ++ L+K K+ +++EA +L N
Sbjct: 144 EEEARFGRIRDEEAKHFQKHI----KDALNKRNGHTYKKAFMEAVESKMLEAGEL--NGA 197
Query: 354 TKPWGR---DTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
W D +G+R +E+LI+ TA V+ + K+ G
Sbjct: 198 WADWANSDSDVMHHIGARCLEILIKSTALVE----------------------IVRKNAG 235
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHML-IPYV--PMLVPPKKWKGYNKGGYLF---LPS 463
K + VV+ LE L + A + I + PM+VPP+ W GGY P+
Sbjct: 236 TKDDQ--NVVQLSGPWLEQLSKRAFSLAGINTINQPMVVPPRPWTRPVGGGYWGKGRRPT 293
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W----VS 517
+ +RTH ++ E + V M +V++A++ +T W +NK VL+V E++ W V
Sbjct: 294 HFIRTH-TKASLERYRDVD---MAEVYKAVNIAQNTAWAINKPVLAVAEALLAWPNVPVK 349
Query: 518 GGNIAGLVDRNDVLIPEKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
A + + +P KP + E+ ++ WK + R S+R E+ + A
Sbjct: 350 KWPSAAVSE-----LPTKPDDIDENPESLKAWKKEAAGVYRGEAARISRRLSLEMNVETA 404
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+ D E Y+PHNLD+RGR Y + + +D+ +G+L+ ++G P+G G+ WL IH
Sbjct: 405 RKFADYEAIYFPHNLDWRGRVYSL-TSFSPQGNDITKGILQASKGEPVGAEGIEWLMIHG 463
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEA 695
AN + GV+K+ D R +V ++ I A +P+ + W ++ + PF LA C +
Sbjct: 464 AN--TAGVDKVPFDERKQWVRDNEDCILRCARDPLQNTEW-MSMDSPFCFLAFCFEWAGV 520
Query: 696 LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVH 755
+ H +S LPI DGSC+G+QH++A+ R+ + AVNL+ D+Y ++ V+
Sbjct: 521 KRDGENH--VSALPIAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSPTVQDIYRLVSDGVN 578
Query: 756 EIMKRDSNKDPSKHPQALL-------------------AKILIDQVDRKLVKQTVMTSVY 796
I++ D + + ++ A L VDR + K++VMT Y
Sbjct: 579 NILRDDVDNGTDDSSETIVDKKTGEIRERRIIGTRTLAAMWLAYGVDRSVTKRSVMTLAY 638
Query: 797 GVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
G G +Q++ + + I + +F A A++
Sbjct: 639 GSKEFGFCDQVRDDIVQPA-IDAGKTMFTDAQQASR 673
>gi|147770014|emb|CAN63269.1| hypothetical protein VITISV_026360 [Vitis vinifera]
Length = 798
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 101/120 (84%), Gaps = 1/120 (0%)
Query: 612 RG-VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
RG +LEF EGR LGKS L WL IHL NL++GG++KLS++G +AF+ENHL +IFDS + P+
Sbjct: 672 RGSILEFVEGRLLGKSSLHWLNIHLENLYAGGLDKLSYEGWVAFIENHLEDIFDSTDRPL 731
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
G WL+AEDPFQCLAACINLSEAL+SSSP + ISH+P+HQDGSCN LQH AALGR+T+
Sbjct: 732 EGRHGWLSAEDPFQCLAACINLSEALRSSSPETTISHMPVHQDGSCNDLQHSAALGRDTV 791
>gi|77118172|ref|YP_338094.1| RNA polymerase [Enterobacteria phage K1F]
gi|72527916|gb|AAZ72968.1| RNA polymerase [Enterobacteria phage K1F]
gi|83308114|emb|CAJ29347.1| gp1 protein [Enterobacteria phage K1F]
Length = 893
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 154/582 (26%), Positives = 266/582 (45%), Gaps = 71/582 (12%)
Query: 254 LPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKK 313
+ + AVI++ ++ ++ + + + A IG +E EIR +K K + KK
Sbjct: 122 ISCESAAVIILKVILSKLV---KPEGIPITPMASAIGRTLEDEIRFGRIRDKEKEH-FKK 177
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSK--RVMEAQKLLKNEETKPWG--RDTQA-KLGSR 368
IAD L KR + K + +EA L + + WG T+A +G +
Sbjct: 178 AIADN----------LNKRAGASYKKAYMQAVEASMLEQGQLEDAWGTWSPTEAVHVGIK 227
Query: 369 LVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLE 427
++E++I+ T V+ A + DV H +K Q+ G+
Sbjct: 228 MLEIVIQSTQLVELKRYGAGNAAADVE--MVHLSDFWVKKMAQRGFSLAGIAPV------ 279
Query: 428 GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGN 484
Y P +VPPK W G GGY P ++R GS+ + V
Sbjct: 280 ------------YQPCVVPPKPWTGVVGGGYWAKGRRPLPLIRL-GSKSAVARYEDV--- 323
Query: 485 CMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEV 544
M +V+EA++ + +T W+VNK+VL V+ + + + + L PE E E+
Sbjct: 324 YMPEVYEAVNIIQNTPWKVNKKVLDVVNMVEKLNNTPIDDIPQMEPLKPEAYAGETEEEL 383
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
+ WK + + + R S+R ++ A + + ++P+N+D+RGR Y + P N
Sbjct: 384 KAWKKAAAGIYRREKARQSRRLSLSFIVNQANKFSQFKAIWFPYNMDWRGRVYAV-PMFN 442
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
+D+ +G+L A G+P+G G +WLK+H AN GV+K++ + R+ +VE++ I
Sbjct: 443 PQGNDMQKGLLTLAVGKPIGADGFKWLKVHGAN--CAGVDKVTFEERIKWVEDNHDNIMA 500
Query: 665 SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAA 724
+A+ P++ WW + PF LA C + + +S LPI DGSC+G+QH++A
Sbjct: 501 AAKAPMDSIEWWGKLDSPFCFLAFCFEYAGVMHHGLSYSC--SLPIAFDGSCSGIQHFSA 558
Query: 725 LGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK----RDSNKDPSKHPQALLAKI--- 777
+ R+ + AVNL K D+Y ++ R+ E +K ++ + H +I
Sbjct: 559 MLRDHIGGHAVNLTPSGKVQDIYRIVSDRIEEELKVLLVNGTDNEMVTHEDKKTGEITER 618
Query: 778 ------------LIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L + RK+ K++VMT YG G +Q+
Sbjct: 619 LKLGTRELARQWLTYGMSRKVTKRSVMTLAYGSKEYGFADQV 660
>gi|194100256|ref|YP_002003454.1| gp1 [Enterobacteria phage BA14]
gi|193201251|gb|ACF15731.1| gp1 [Enterobacteria phage BA14]
Length = 883
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 171/591 (28%), Positives = 282/591 (47%), Gaps = 92/591 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 139 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 193
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHR-FK 402
A +L T W + +G R++ELLI T V+ HR F
Sbjct: 194 AGQLQTKWTT--WTPEESIHVGVRMLELLIGSTGLVE-----------------LHRPFA 234
Query: 403 TILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
++ G+ + T++Y ++ L + A + + P Y P +VPPK W GG
Sbjct: 235 GNVEKDGEYIQLTEQY---------VDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGG 285
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 286 YWAAGRKPLSLVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEI 341
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE--RHSQRCDT 568
W ++ L +R + +P KP D E W + +E R S+R
Sbjct: 342 VNWKHCPVDDVPAL-ERGE--LPIKPEDIDTNEAALKAWKKAASAIYRKEKARVSRRMSM 398
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G
Sbjct: 399 EFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGY 457
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA
Sbjct: 458 YWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFLAF 514
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C + ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y
Sbjct: 515 CFEYAGVQHHGMKYNC--SLPLAFDGSCSGIQHFSAMLRDEIGGRAVNLLPSKEVQDIYR 572
Query: 749 EIAVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQ 789
+A RV+EI+K+D +NKD + + L + L V RK+ K+
Sbjct: 573 IVAERVNEILKQDVINGTDNEVEIVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKR 632
Query: 790 TVMTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKV 833
+VMT YG G R+Q+ LE+ + I D + L AA Y AK+
Sbjct: 633 SVMTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKL 680
>gi|194100311|ref|YP_002003741.1| gp1 [Enterobacteria phage EcoDS1]
gi|193201306|gb|ACF15785.1| gp1 [Enterobacteria phage EcoDS1]
Length = 893
Score = 180 bits (456), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 148/556 (26%), Positives = 253/556 (45%), Gaps = 68/556 (12%)
Query: 280 VQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKS 339
+ + A IG +E EIR +K K + KK IAD L KR + K
Sbjct: 145 IPITPMASAIGRTLEDEIRFGRIRDKEKEH-FKKAIADN----------LNKRAGASYKK 193
Query: 340 K--RVMEAQKLLKNEETKPWG--RDTQA-KLGSRLVELLIE-TAYVQHPVNPADYSPPDV 393
+ +E L + + WG T+A +G +++E++I+ T V+ A + DV
Sbjct: 194 AYMQAVETSMLEQGQLEDAWGTWSPTEAVHVGIKMLEIVIQSTQLVELKRYGAGNAAADV 253
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGY 453
H +K Q+ G+ Y P +VPPK W G
Sbjct: 254 E--MVHLSDFWVKKMAQRGFSLAGIAPV------------------YQPCVVPPKPWTGV 293
Query: 454 NKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
GGY P ++R GS+ + V M +V++A++ + +T W+VNK+VL V
Sbjct: 294 VGGGYWAKGRRPLPLIRL-GSKSAVARYEDV---YMPEVYDAVNIIQNTPWKVNKKVLEV 349
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTEL 570
+ + + + + L PE E E++ WK + + + R S+R
Sbjct: 350 VNMVEKLNNTPIDDIPQMEPLKPEDYAGETEEELKAWKKAAAGIYRREKARQSRRLSLSF 409
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
++ A + + ++P+N+D+RGR Y + P N +D+ +G+L A G+P+G G +W
Sbjct: 410 IVNQANKFSQFKAIWFPYNMDWRGRVYAV-PMFNPQGNDMQKGLLTLAVGKPIGADGFKW 468
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LK+H AN G++K++ + R+ +VE++ I +A+ P++ WW + PF LA C
Sbjct: 469 LKVHGAN--CAGIDKVTFEERIKWVEDNHDNIMATAKAPMDSIEWWGKLDSPFCFLAFCF 526
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ + +S LPI DGSC+G+QH++A+ R+ + AVNL K D+Y +
Sbjct: 527 EYAGVMHHGLSYSC--SLPIAFDGSCSGIQHFSAMLRDHIGGHAVNLTPSGKVQDIYRIV 584
Query: 751 AVRVHEIMK----RDSNKDPSKHPQALLAKI---------------LIDQVDRKLVKQTV 791
+ R+ E +K ++ + H +I L + RK+ K++V
Sbjct: 585 SDRIEEELKVLLVNGTDNEMVTHEDKKTGEITERLKLGTRELARQWLTYGMSRKVTKRSV 644
Query: 792 MTSVYGVTFVGAREQI 807
MT YG G +Q+
Sbjct: 645 MTLAYGSKEYGFADQV 660
>gi|197935879|ref|YP_002213715.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
gi|197927042|dbj|BAG70384.1| DNA-directed RNA polymerase [Ralstonia phage RSB1]
Length = 805
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 175/655 (26%), Positives = 297/655 (45%), Gaps = 84/655 (12%)
Query: 210 APNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELL----PADKVAVIVMH 265
A N P+ L+ + PL + I ++ +TK + + H+ LL PA A I +
Sbjct: 21 ADNNPYATALYRQYVLPLRDLITSTIELHKTKAGR--HGAHVSLLKQVDPA-VAAYIAVR 77
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE 325
+ +++AG + + HIG++I++E+ + F E + ++ D + SK
Sbjct: 78 TAITVLLAGAANSARALSN---HIGLSIQREVTLAGF-EISNPDLFWEVSHDLDRRHSKA 133
Query: 326 KELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385
+ R +L+ + R E E WG + ++GS ++E L V+ ++
Sbjct: 134 SQ---HRYAALMGAARNKEI-------ELPMWGVGDREQIGSWMLETLRTLGMVE-VLHH 182
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRY-GVVECD-PLVLEGLDRSAKHMLIPYVPM 443
+++ R R R + L T +R G+VE PL ++P
Sbjct: 183 KEWN----RGKMRERIEASLSEDAMHTVQRISGLVELTMPL---------------HMPC 223
Query: 444 LVPPKKWKGYNKGGY------LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
+ PPK W N+GGY +P V+ H K L + + V A++ L
Sbjct: 224 IEPPKPWTSLNEGGYHSKEMRYIMPHCVVMRH--VKSPALLDELRAHNWGTVLTAINALQ 281
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--LSEDMT----------EVQ 545
T W++N ++L + ++ N+ +V + + P KP L++DM E
Sbjct: 282 QTAWQINGEMLQTILTV-AKHHNMDEIVSQAESPKPGKPDWLADDMKKEDMDEDQLREFH 340
Query: 546 KWKWSVRKAKKINQERHSQ-----RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
WK R+ + + +R Q R T + VA MKD E Y+ + DFRGR Y
Sbjct: 341 MWK---REMAQWHTDRKLQGTKWGRFYTATR--VANEMKDYESIYFTYQADFRGRLYAQT 395
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLG-KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHL 659
++ SD+ + +L FA+G PLG + ++W KI+ AN F GV+K+ + R+A+V+ H
Sbjct: 396 TGVSPQGSDLQKSLLRFAKGLPLGTDAAVQWFKINGANRF--GVDKVPYAERIAWVDEHA 453
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
I A++P++ W A+ P Q LA + + P + +S + + DGSCNGL
Sbjct: 454 ARIIAMADDPVSNFGW-AEADSPLQFLAWAKEFARWKRD--PANFVSQIAVGMDGSCNGL 510
Query: 720 QHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
QH++A+ R+ + A NL+ G KP D+Y+++A + D + L
Sbjct: 511 QHFSAMLRDDVGGRATNLLPGAKPNDIYAQVATVTQARLAALILPDDDARGREFQRLWLK 570
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
++RKLVK++VMT YG T + I + KG + F A YA+ S
Sbjct: 571 HGINRKLVKRSVMTLPYGSTRFSCADFIVQDYLRKGLAPE----FEQAQYASAAS 621
>gi|33300837|ref|NP_877465.1| putative DNA-dependent RNA polymerase [Pseudomonas phage phiKMV]
gi|195546670|ref|YP_002117751.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|387935474|ref|YP_006299950.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
gi|33284808|emb|CAD44217.1| putative DNA-dependent RNA polymerase [Enterobacteria phage phiKMV]
gi|158187631|gb|ABW23108.1| DNA-dependent RNA polymerase [Pseudomonas phage PT5]
gi|378407720|gb|AFB83282.1| RNA polymerase [Pseudomonas phage vB_Pae-TbilisiM32]
Length = 816
Score = 176 bits (447), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 194/395 (49%), Gaps = 29/395 (7%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W + GGY + V RT R +Q L+ + + M KV+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQAQLRHLGQDKMPKVYEAVNV 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N+ V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINRDVYEIIERVFNSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMY-YWGTPNP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F + R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHDKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + AE P +A + L A S +P S +H D +C+GLQHY+
Sbjct: 468 ALAEGPENYPGLFPEAESPLCAIAGLLELRAAYASGNPEGYRSGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V+E ++RD + P +A +L D+
Sbjct: 528 AILRDEIGGAYVNLLPPGLAKADIYSRVLGLVNESLERD--RAPGAEGEARGYALLWDKA 585
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ R L K+ MT VYG TF G + L+E G
Sbjct: 586 GLSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDESG 620
>gi|225626353|ref|YP_002727849.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
gi|225594862|emb|CAX63147.1| putative phage-specific RNA polymerase [Pseudomonas phage phikF77]
Length = 816
Score = 175 bits (444), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 192/395 (48%), Gaps = 29/395 (7%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W+ + GGY + V RT R +Q L+ + + M +V+EA++
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNV 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + AE P +A + L A S +P S +H D +C+GLQHY+
Sbjct: 468 ALDEGPENYPSLFPEAESPLCAIAGLLELRAAYASGNPEGYASGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V+E ++RD + + +L D+
Sbjct: 528 AILRDEIGGAYVNLLPPGLAKADIYSRVLGLVNEALERDRAEGADGEARGY--ALLWDKA 585
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ R L K+ MT VYG TF G + L+E G
Sbjct: 586 GLTRNLTKKPCMTLVYGTTFKGVVDHCLDYLDESG 620
>gi|212671387|ref|YP_002308386.1| RNA polymerase [Kluyvera phage Kvp1]
gi|211997231|gb|ACJ14548.1| RNA polymerase [Kluyvera phage Kvp1]
Length = 882
Score = 175 bits (443), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 168/591 (28%), Positives = 280/591 (47%), Gaps = 92/591 (15%)
Query: 286 AVHIGMAIEQEIRIHSFL-EKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVME 344
A IG +IE E+R E+ K++K +E L+K ++ K+ ++++
Sbjct: 138 ATKIGRSIEDELRFGRIRDEEAKHFKNH-----VQEALNKRVGIVYKKAFMQAVEGKMLD 192
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHR-FK 402
A +L T W + +G R++ELLI T V+ HR F
Sbjct: 193 AGQLQTKWTT--WTPEESIHVGVRMLELLIGSTGLVE-----------------LHRPFA 233
Query: 403 TILKHPGQ--KTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
++ G+ + T++Y ++ L + A + + P Y P +VPPK W GG
Sbjct: 234 GNVEKDGEYIQLTEQY---------VDLLSKRAGALAAIAPMYQPCVVPPKPWTSPVGGG 284
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y P ++RT GS+K E V M +V++A++ +T W++NK+VL+V+ I
Sbjct: 285 YWAAGRKPLSLVRT-GSKKGLERYNDV---YMPEVYKAVNIAQNTPWKINKKVLAVVNEI 340
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE--RHSQRCDT 568
W ++ L +R + +P KP D E W + +E R S+R
Sbjct: 341 VNWKHCPVEDVPAL-ERGE--LPVKPEDIDTNEAALKAWKKAASAIYRKEKARVSRRMSM 397
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E L A + + ++P N+D+RGR Y + P N +D+ +G+L A+G+P+G G
Sbjct: 398 EFMLGQANKFAQFKAIWFPMNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIGVDGY 456
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN + GV+K+ R+ F++++ I A +PI + WW + PF LA
Sbjct: 457 YWLKIHGAN--TAGVDKVDFAERIKFIDDNHENIMSVAADPI-ANTWWAEQDSPFCFLAF 513
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C + ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ ++ D+Y
Sbjct: 514 CFEYAGVQHHGMNYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSKEVQDIYR 571
Query: 749 EIAVRVHEIMKRD------------SNKDPSK-------HPQALLAKILIDQVDRKLVKQ 789
+A RV+E+++ +NKD + + L + L V RK+ K+
Sbjct: 572 IVAERVNEMLREAVINGTDNEVETVTNKDTGEITEKLKLGTKELAGQWLAYGVTRKVTKR 631
Query: 790 TVMTSVYGVTFVGAREQIKRRLEE--KGHITDDRQLF-----AAACYAAKV 833
+VMT YG G R+Q+ LE+ + I D + L AA Y AK+
Sbjct: 632 SVMTLAYGSKEYGFRDQV---LEDTIQPAIDDGKGLMFTQPNQAAGYMAKL 679
>gi|29366702|ref|NP_813747.1| T3/T7-like RNA polymerase [Pseudomonas phage gh-1]
gi|29243561|gb|AAO73140.1|AF493143_1 putative RNA-polymerase [Pseudomonas phage gh-1]
Length = 885
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 157/586 (26%), Positives = 264/586 (45%), Gaps = 77/586 (13%)
Query: 282 VVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKR 341
+ + AV IG A+E+E R + + +K I ++ L++ + K
Sbjct: 134 ITEMAVSIGGALEEEARFGRIRVLEQQHYQKHI----KKALAQRNGMTYKVAYMEKVEAH 189
Query: 342 VMEAQKLLKNEETKPW---GRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
++EA +L NE W G D + +G R++ELLIE+ +
Sbjct: 190 MIEAGQL--NEPWTEWDQSGADVRYHMGIRMLELLIESTQL------------------- 228
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLI------PYVPMLVPPKKWKG 452
+ + +H G K V L E D+ I Y PM+VPPK W G
Sbjct: 229 --IEVVREHKGNKKLDGEYVY----LKAEWADKLQSRAYILSGVFPRYQPMVVPPKPWNG 282
Query: 453 YNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLS 509
GGY P +R R AL M +V++A++ +T W +N++VL+
Sbjct: 283 VRGGGYWAKGRKPVTFIRVPTKR----ALNRYRDVHMPEVYKAVNLAQATPWAINQKVLA 338
Query: 510 VLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKINQERHSQR 565
V ++ +S N I +P KP + E ++ WK + + + R S+R
Sbjct: 339 VANAV-MSWENVPIKEFPSTEREALPIKPGDIETNEEALKAWKKAAAGVYRKDAARVSRR 397
Query: 566 CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK 625
E L A + + + Y+P+NLD+RGR Y + P N S+D+ +G+L+ A+G P+GK
Sbjct: 398 LSYEFSLEQANKFAEYDAIYFPYNLDWRGRVYAI-PAFNPQSNDMTKGILQAAKGEPVGK 456
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC 685
G+ WL IH AN GV+K+ R +++++ I A +P+ + W+ + PF
Sbjct: 457 DGIEWLMIHGAN--CAGVDKVDFSQRKQWIKDNEEMILRCAHDPLINTD-WMDMDSPFCF 513
Query: 686 LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPAD 745
LA C H +S LPI DGSC+G+QH++A+ R+ AVNL+ + D
Sbjct: 514 LAFCFEWQGVKLHGEAH--VSALPIAFDGSCSGIQHFSAMLRDERGGRAVNLLQSDDVQD 571
Query: 746 VY----SEIAVRVHEIMKR--------DSNKDPSK-------HPQALLAKILIDQVDRKL 786
+Y E+ + + +K D+N+D + + L L + RK+
Sbjct: 572 IYKLVSDEVEIALQWDLKYGTEDSTVLDTNEDTGEITERRVLGTKTLAMAWLTYGMSRKV 631
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
K++VMT YG G +Q++ + +K D ++F + A++
Sbjct: 632 TKRSVMTLAYGSKAYGFADQVREDIVKKAIDNGDGEMFTSPGEASR 677
>gi|158345053|ref|YP_001522818.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
gi|114796406|emb|CAK25962.1| putative DNA-dependent RNA polymerase [Pseudomonas phage LKD16]
Length = 816
Score = 172 bits (435), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 191/395 (48%), Gaps = 29/395 (7%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W+ + GGY + V RT R +Q L+ + + M +V+EA++T
Sbjct: 233 MLAPPRPWQDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQIQLRHLGRDKMPRVYEAVNT 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V +++ ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIDRVFTSGGGVLGIPKRTYPDKPEFPLGDEWSKENASEQELESFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRVLGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + E P +A + L A S +P S +H D +C+GLQHY+
Sbjct: 468 ALEEGPENYPNLFPEDESPLCAIAGLLELRAAYASGNPEGYASGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V E ++RD + + +L D+
Sbjct: 528 AILRDEIGGAYVNLLPPGLAKADIYSRVLGLVSESLERDRAEGTDGEARGY--ALLWDKA 585
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ R L K+ MT VYG TF G + L+E G
Sbjct: 586 GLTRSLTKKPCMTLVYGTTFKGVVDHCLDYLDESG 620
>gi|313892513|ref|ZP_07826102.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
gi|313119092|gb|EFR42295.1| DNA-directed RNA polymerase [Dialister microaerophilus UPII 345-E]
Length = 861
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 207/425 (48%), Gaps = 38/425 (8%)
Query: 442 PMLVPPKKWKGYNKGGY----------LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFE 491
PM+VPP WK +KGGY + + ++ + + K + + +VFE
Sbjct: 251 PMVVPPLPWKNRHKGGYHGELKRFHSFIRTAKFTWKSCKNYYYDKYKKQLDQTNLTRVFE 310
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551
++ + +T W++NK V+ +LE + GG +AGL P + ++Q+ K +
Sbjct: 311 VVNHIQATPWKINKDVMHILEKVIDRGGELAGLPRLQPFEHPPMLKNPTQEQLQEHKKKL 370
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
K R + T + A+ + Y+PHN+DFRGR YP+ P + +D+
Sbjct: 371 HTLYKHEASRSGKAIRTFMNFDTAKTYAKYDKIYFPHNIDFRGRIYPI-PTFSPQGNDLN 429
Query: 612 RGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
+G+L A+ +PL K L+W I A L G++K+ + + +V++H +I +A++P+
Sbjct: 430 KGLLLLADPQPLKKEEDLKWFFIAGAEL--AGIDKVPFEECIKWVQDHEKQIMATAQDPM 487
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSS----SPHSVISHLPIHQDGSCNGLQHYAALG 726
WW + P+Q L C + K +P ++ L I DG+C+GLQH++AL
Sbjct: 488 KNISWWGELDSPWQFLGFCYEYKKYKKYIEEHKTPIGFMTGLVIPFDGTCSGLQHFSALL 547
Query: 727 RNTLEAAAVNLVAGEKPADVYSEIA-VRVHEIMK-------------RDSNKDPSKHPQA 772
R+ + AAAVNL KP D+Y E+A V + E+ K + + K+ K+
Sbjct: 548 RDEVGAAAVNLKPDTKPHDIYQEVADVVIEEVEKEAQTGTQDAYVKNKKTGKEKLKYGTR 607
Query: 773 LLAK-ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL----EEKGHITDDRQLFAAA 827
LA+ L + RK+ K+ VMT YG G EQ+ + + G T+D FA A
Sbjct: 608 TLAQGWLAYGITRKVTKRNVMTLAYGSKQFGFTEQLLQDIIIPNIGAGIFTEDNS-FAYA 666
Query: 828 CYAAK 832
Y +K
Sbjct: 667 QYMSK 671
>gi|313211715|emb|CBY40657.1| unnamed protein product [Oikopleura dioica]
Length = 1238
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/393 (27%), Positives = 184/393 (46%), Gaps = 20/393 (5%)
Query: 441 VPMLVPPKKWKGYN---KGGYLFLPSYVMRTHGSR-------KQQEALKSVTGNCMKKVF 490
+PML PP+ +K ++ KG +L P +++ R ++ + + +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIA---GLVDRNDVLIPEKPLSEDMTEVQKW 547
A + + W +NK+++ VLE + GG + D D+ K + T +
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+ ++ E + L + + + F+ P +LD+RGR YP +N LS
Sbjct: 721 NRHKQVETRLRVEEKGLYVTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIMNPLS 780
Query: 608 SDVCRGVLEFAEGRPLGK------SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
SD R F + + LG +G WL I +L S +K +H L + + +
Sbjct: 781 SDPYRASFLFGKAKKLGGRQKNGFTGFDWLLIQCISL-SDKKKKATHGEMLHYAWQNFHA 839
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
I DS +P+ G RWW T E PFQ LAAC+ + +A + P + + +H DG+CNG QH
Sbjct: 840 ICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVHMDGTCNGFQH 899
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
Y+A+GR+T+ A N++ E+P+D Y I ++M D + + + +AKI
Sbjct: 900 YSAMGRDTIGAIFTNVLPTERPSDFYQSILDSALKLMDEDIAAEGANFEKLRVAKIARKV 959
Query: 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
V R +VK+ VM YG++ GA + + L K
Sbjct: 960 VTRSIVKRPVMAIPYGLSVRGAVDICRNNLHGK 992
>gi|167600472|ref|YP_001671971.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
gi|161168335|emb|CAP45499.1| phage-specific RNA polymerase [Pseudomonas phage LUZ19]
Length = 815
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 187/395 (47%), Gaps = 30/395 (7%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W + GGY + V RT R +Q L+ + + M +V+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + E P +A + L A S P S +H D +C+GLQHY+
Sbjct: 468 ALDEGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V E + RD +A +L D+
Sbjct: 528 AILRDEVGGAYVNLLPPGLAKADIYSRVLALVAESLARDRE---GAEGEARGYAVLWDKA 584
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ R L K+ MT VYG TF G + L+E G
Sbjct: 585 GLSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDEAG 619
>gi|448936997|gb|AGE60541.1| RNA polymerase [Pelagibacter phage HTVC011P]
Length = 880
Score = 170 bits (430), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/401 (31%), Positives = 203/401 (50%), Gaps = 33/401 (8%)
Query: 437 LIP-YVPMLVPPKKWKGYNKGGYLFL-------PSYVMRTHGSRKQQ--EALKSVTGNC- 485
L P Y+PM +PP+KW GGY P ++ S K + L+ +
Sbjct: 279 LFPKYMPMKMPPRKWTSPFIGGYYGKKHNFENKPKDIINALQSSKSKYRRYLEELNNKVH 338
Query: 486 -MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL-VDRNDVLIPEKP--LSEDM 541
M V+E+++T+ T+W +NK + ++++ + N+ L V+ + +P KP + +
Sbjct: 339 EMPVVYESINTIQETEWVINKPIFDLIKTCMENDFNLGQLPVNPQSMELPPKPFDIKTNK 398
Query: 542 TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
+ KWK + K + S+ L + A +++ GF+YP+ DFR R YP
Sbjct: 399 EALIKWKREAQHVHKSIGQAMSKFIQVRLVMEEATVLQNIGGFFYPYQFDFRFRIYPKPA 458
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
L+ S+D R +L+F G+P+G + I ANL+ G V+K R +V+++
Sbjct: 459 LLSPQSADYSRALLKFKFGKPMGNNDSYSVFAIAGANLY-GEVDKEELPIREQWVKDNTD 517
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
I +A NP+ + WW +A+ P+ LA I E + S I+ LPI D S +GLQ
Sbjct: 518 RIIATATNPLEDT-WWASADKPYCFLAWAIEFKEFVASGYSPDFITTLPIQADCSNSGLQ 576
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK-RDSNKDPSKHPQALLAKILI 779
HY+A+ R+ + A NLV KP+DVY+ +A ++ IMK RD +P LAK I
Sbjct: 577 HYSAMMRDEIGGKATNLVPSNKPSDVYNLVAQKL--IMKLRDMKDEP-------LAKKWI 627
Query: 780 DQ-VDRKLVKQTVMTSVYGVTFVGAR----EQIKRRLEEKG 815
D +DRKL K+ VM Y +T R E +K++L EKG
Sbjct: 628 DYGIDRKLCKKPVMCLPYSLTKFSCRKYIEEHMKKQLNEKG 668
>gi|315518929|dbj|BAJ51806.1| RNA polymerase-like protein [Ralstonia phage RSB2]
Length = 863
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 155/612 (25%), Positives = 277/612 (45%), Gaps = 78/612 (12%)
Query: 234 EQKMQRTKKQKA----AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E+ + T+ KA A A + + ++ A I + ++ + V + +
Sbjct: 69 EEFLALTQSGKAGRRHAAAKFLSQVSVERAAFITLRCILNAMTQTSGGSGSSKVPTVISV 128
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLL 349
MAI ++ + + ++ +K A +++ KR + + +A +L
Sbjct: 129 TMAIGHDMEDEARFGRMRDENQKHFDARIAPAIAQRSGDHFKRAYARAVEVAMQDAGEL- 187
Query: 350 KNEETKPWGRDTQAKLGSRLVELLIETAYV-----QHPVNPADYSPPDVRPAFRHRFKTI 404
+E W +A +G +LVE++I++ + +H +P RHR
Sbjct: 188 --DEWDGWSNQERAAVGLKLVEIVIQSTGLIELKQEHKGDPK-----------RHRV--- 231
Query: 405 LKHPGQKTTKRYGVVECDPLVLEGLDR---SAKHMLIPYVPMLVPPKKWKGYNKGGYLF- 460
VVE E L + + M Y P +VPPK W + GGY F
Sbjct: 232 -------------VVEITDQYAEWLAKRTHTLADMTPAYAPCVVPPKPWINHRAGGYWFN 278
Query: 461 -LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--WVS 517
+ +M GS K+ + V + KV +L+ + +T W +NK+VL V E + W
Sbjct: 279 EDKAPLMLVRGSPKRNRRYRDVD---LTKVLASLNAIQNTPWTINKRVLEVAEQVAQW-E 334
Query: 518 GGNIAGLVDRNDVLIPEK--PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVA 575
+ + + PE+ + ED +++WK A + + R S+R E L A
Sbjct: 335 NPPVKKMPSHVTLEKPERLDEMDEDEAVLKQWKKQAALAYRKEKARRSRRYQLETSLFQA 394
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHL 635
R+ E ++P++LDFRGR Y + D+ + +L FA+ +G G WL++HL
Sbjct: 395 RKYAGFERLWFPYSLDFRGRIYAA-TKFSPQGQDLDKALLLFADAPEIGVGGEFWLRMHL 453
Query: 636 ANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT-AEDPFQCLAACINLSE 694
AN +GG++K + + R+ + +++ I A NP++ WW T A+ PF LAA +
Sbjct: 454 AN--TGGMDKATMEERIQWTKDNEEMILAVAANPLD-CLWWATDADSPFCFLAAAFEYAN 510
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV 754
K+ P S L I DGSC+G+QH++A+ R+ + AVNL+ EKP+D+Y ++ +V
Sbjct: 511 -WKAIGP-SYRCGLAIAFDGSCSGIQHFSAMLRDEIGGKAVNLIPSEKPSDIYRIVSDKV 568
Query: 755 HEIMKRDSNKDPSKHPQAL------------------LAKILID-QVDRKLVKQTVMTSV 795
++++ +D + + + LA+ +D +V R + K++VMT
Sbjct: 569 NKVLLKDLADGTADYTDTITDKETGEITERPRRGTKTLARHWMDYKVTRSVTKRSVMTLP 628
Query: 796 YGVTFVGAREQI 807
YG G +Q+
Sbjct: 629 YGSKKYGFTDQL 640
>gi|448937046|gb|AGE60589.1| RNA polymerase [Pelagibacter phage HTVC019P]
Length = 814
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 154/584 (26%), Positives = 275/584 (47%), Gaps = 62/584 (10%)
Query: 266 KMMGLVMAGHEDRCV----QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV 321
K++ L+ A H + + A+ +G IE EI + KN+K + E
Sbjct: 90 KIVALITAKHVINTITNTKNLTACAITLGGRIETEISL-------KNFKG----LNPELY 138
Query: 322 LSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQH 381
+ +K+L ++ N K +++ E+ K + + W + +G LV LLIE+ +
Sbjct: 139 ETVKKDLDKRSWNYNYKRRKLRESAKRDEVMRWEEWTTTERLHVGMELVSLLIESTGLIE 198
Query: 382 PVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYV 441
+H+ KT+ TK + ++ ++ + + Y+
Sbjct: 199 IATE------------QHKHKTVKVIKQTAKTKDW---------IDNRNKFNELLNPEYL 237
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTK 500
M++PPK G+ + S + +++ + NC M +V A++ + ST
Sbjct: 238 MMVMPPKSVVDGKVTGHGYWTSEMPELDLVKQKGKKFNKEMENCAMPEVTTAVNLMQSTA 297
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--LSEDMTEVQKWKWSVRKAKKIN 558
+++N +LSV+++ W G +I G+ ++ +P KP + + ++K+K N
Sbjct: 298 YKINPFILSVMQNAWDKGLSIGGMPPIKNLDLPNKPHDIETNPEALKKFKKDSVIVHTEN 357
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
S+R + +A + KD Y+P LDFRGRAY + LN+ S + + +L F+
Sbjct: 358 NRMVSKRLLYAKIIWLAEKFKDYATLYFPLQLDFRGRAYCVPAFLNYQSINGAKALLNFS 417
Query: 619 EGRPLGKS--GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWW 676
+G+ + K G+ WL +H +N++ G +K+S + R + ++L I + AE+PI +R W
Sbjct: 418 QGKAITKENRGVFWLAVHGSNMW--GNDKVSFEDREKWSYDNLQWITECAEDPI-ANRQW 474
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A++PFQ LA C ++ +SH+P++ DGSCNGLQ Y+ L ++ + VN
Sbjct: 475 EDADNPFQFLAFCDEWKRYQETGD--GFVSHIPVNVDGSCNGLQIYSLLLKDKVAGKLVN 532
Query: 737 LVAGEKPADVYSEIAVRVHEIMK-RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
+ E P D+Y +A V + +K + S DP L K L V R K+ +MT
Sbjct: 533 CLPSEIPQDIYQLVANEVIKTLKVKASEGDP------LAQKWLDYGVKRSTCKRPIMTIC 586
Query: 796 YGVT------FVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
YG T FV + KR+ + + H DD +F A Y +K+
Sbjct: 587 YGSTRYSCTDFV-VEDLTKRKDKGEMHPFDD--MFKPATYLSKI 627
>gi|223304|prf||0706231A polymerase,RNA
Length = 883
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 176/676 (26%), Positives = 301/676 (44%), Gaps = 103/676 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAFQ--FLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKE-KELLRKRVNSLIKSKRVMEAQKL 348
G AIE E R + ++ + K + EE L+K + +K ++++ M ++ L
Sbjct: 142 GRAIEDEAR----FGRIRDLEAKHFKKNVEEQLNKRVGHVYKKAFMQVVEAD--MLSEGL 195
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L E W ++ +G R +E+LIE+ + + R +
Sbjct: 196 LGGEAWSSWHKEDSIHVGVRCIEMLIEST--------------GMVSSHRQNAGVV---- 237
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF---LP 462
GQ + +E P E + A + + P + P +VPPK W G GGY P
Sbjct: 238 GQDSE----TIELAPEYAEAIAIRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRP 293
Query: 463 SYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W--VSG 518
++RTH ++AL M +V++A++ +T W++N++VL+V I W
Sbjct: 294 LALVRTH----SKKALMRYEDVYMPEVYKAINIAQNTAWKINRKVLAVANVIARWKHYPV 349
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMT--EVQKWK-----WSVRKAKKINQERHSQRCDTE-L 570
+I ++R + +P KP DM + WK + R C ++ +
Sbjct: 350 EDIPA-IEREE--LPMKPEDIDMNPEALTAWKRLPLLCTARTGLASLAVSALSSCLSKPI 406
Query: 571 KLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRW 630
L R P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G W
Sbjct: 407 SLLTIRPPGS------PYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYW 459
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
LKIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 460 LKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCF 516
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+ ++ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y +
Sbjct: 517 EYAGVRHHGLSYNC--SLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIV 574
Query: 751 AVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQTV 791
A +V+EI++ D+ +AL + L V R + K++V
Sbjct: 575 AKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAHGVTRSVTKRSV 634
Query: 792 MTSVYGVTFVGAREQI 807
MT YG G R+Q+
Sbjct: 635 MTLAYGSKEFGFRQQV 650
>gi|195546732|ref|YP_002117810.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
gi|165880741|gb|ABY70996.1| putative DNA-dependent RNA polymerase [Pseudomonas phage PT2]
Length = 815
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/395 (31%), Positives = 186/395 (47%), Gaps = 30/395 (7%)
Query: 443 MLVPPKKWKGYNKGGYLFLPS-----YVMRT--HGSRKQQEALKSVTGNCMKKVFEALDT 495
ML PP+ W + GGY + V RT R +Q L+ + + M +V+EA++
Sbjct: 233 MLAPPRPWNDWCDGGYYSAKAQKHHVLVRRTKHQTKRARQMQLRHLGRDKMPRVYEAVNA 292
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----------MTEVQ 545
L S + +N V ++E ++ SGG + G+ R PE PL ++ +
Sbjct: 293 LQSVAYEINHDVYEIIERVFTSGGGVLGIPQRTYPDKPEFPLGDEWAKENASEQELEAFN 352
Query: 546 KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+WK SV + +E H+ + L R + Y+P ++D RGR Y N
Sbjct: 353 RWKRSVHRWYTGERE-HTAKLREFAALYRVVREHHGKAVYFPMHVDSRGRMYYWGTP-NP 410
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
SD+ + L F E R LGK GL WLK+H+AN S G +K+ D R A+V+ ++ F
Sbjct: 411 QGSDIAKACLRFHEKRALGKRGLYWLKVHVAN--SLGCDKVYFDDRAAWVDER-WDDFQR 467
Query: 666 A--ENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
A E P N + E P +A + L A S P S +H D +C+GLQHY+
Sbjct: 468 ALDEGPENYPGLFPEDESPLCAIAGLLELRAAYASGQPERYQSGFIVHMDATCSGLQHYS 527
Query: 724 ALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
A+ R+ + A VNL+ G AD+YS + V + RD +A +L D+
Sbjct: 528 AILRDEVGGAYVNLLPPGLTKADIYSRVLALVAGSLARDRE---GAEGEARGYAVLWDKA 584
Query: 782 -VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ R L K+ MT VYG TF G + L+E G
Sbjct: 585 GLSRSLTKKPCMTLVYGTTFKGVVDHCLDYLDEAG 619
>gi|158425231|ref|YP_001526523.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
gi|158332120|dbj|BAF89605.1| DNA-directed RNA polymerase [Azorhizobium caulinodans ORS 571]
Length = 841
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 190/416 (45%), Gaps = 62/416 (14%)
Query: 440 YVPMLVPPKKWK-----GYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALD 494
++P ++PPK+W GY+ G LP R + L+ + G + V+ A++
Sbjct: 233 FLPTIIPPKRWTTPFDGGYHSGLVQRLPFVKTR------NRNYLEELAGRDLSAVYAAVN 286
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE-------------KPLSEDM 541
+ T W+VN+ VL VL+ W DR D+ P+ KP
Sbjct: 287 AMQETPWQVNRDVLRVLKEAW----------DR-DLKSPKLKLPPRDPLDLPPKPADIAT 335
Query: 542 TEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599
EV + WK + N + S+R + +A + + Y+P+ LDFRGR Y +
Sbjct: 336 NEVSRKEWKKAASLIHAANAKLKSKRVQIRKIIELAGQFSEYAEIYFPYQLDFRGRVYAV 395
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
LN D + +L FA G+P+G WL IH AN++ G +K S + R+++VE
Sbjct: 396 PMFLNPQGPDHAKALLTFARGKPIGDGVAAGWLAIHGANVY--GYDKASLEDRISWVEER 453
Query: 659 LYEIFDSAENPIN-GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
I A +P G +W A+ P+Q LA C + L+ + +S LP+ DGSCN
Sbjct: 454 NALIASVAADPWGEGFEFWTEADKPWQFLAFCFEWAGFLREGFDY--VSTLPVALDGSCN 511
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK------------------ 759
GLQHY+A R+ + AAVNLV KP D+Y+ +A ++
Sbjct: 512 GLQHYSAALRDPVGGAAVNLVPSGKPQDIYARVAEVALGLVTAFVCPNGSTTGTIPNLSR 571
Query: 760 -RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
R + + + + L +DRK+ K+ VMT YG T RE I+ + EK
Sbjct: 572 LRKTWAEHGIDELDMANRWLAFGIDRKVTKRAVMTLPYGSTQYSCREFIEEAVREK 627
>gi|397502338|ref|XP_003821818.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial [Pan
paniscus]
Length = 1273
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 191/400 (47%), Gaps = 30/400 (7%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQILQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + V +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRREVVHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL 848
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 103/146 (70%), Gaps = 6/146 (4%)
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
+P G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHYAALGR
Sbjct: 916 SPTCGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGR 975
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787
+++ AA+VNL + P DVYS +A +V ++D+ + +A++L + RK+V
Sbjct: 976 DSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVLEGFITRKVV 1029
Query: 788 KQTVMTSVYGVTFVGAREQIKRRLEE 813
KQTVMT VYGVT G R QI++RL E
Sbjct: 1030 KQTVMTVVYGVTRYGGRLQIEKRLRE 1055
>gi|238695622|ref|YP_002922649.1| P35 [Xanthomonas phage phiL7]
gi|190343989|gb|ACE75775.1| P35 [Xanthomonas phage phiL7]
Length = 804
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 200/420 (47%), Gaps = 50/420 (11%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALD 494
++P + PP W +++GG+ L Y ++TH + L +T K L+
Sbjct: 227 FLPCVEPPIPWTKHDEGGWHTDEMRRLMPYAIKTHAGVRHLLDLADLT-----KELACLN 281
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI------PEKP--LSEDMT---- 542
L TKWR+N+ +LE++ + GG I D +VL PE+P L E M
Sbjct: 282 ALQETKWRINR---PILEALRLMGGKI----DLGEVLAQGEEPRPERPEWLGERMKVEAM 334
Query: 543 ------EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
E + WK K + +ER + + VA + + + ++ + DFRGR
Sbjct: 335 DVDQAKEFRAWKRLTAKWHRKKKERAVKWGRYRHAMQVATKFVEYDALHFVYFCDFRGRK 394
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR-WLKIHLANLFSGGVEKLSHDGRLAFV 655
Y M ++ SD+ + +L FAEG+PL G + W +I AN + G +K+ GR+ +V
Sbjct: 395 YAMTTGVSPQGSDLQKALLHFAEGKPLHTQGAKDWFRITGANRY--GYDKVDLQGRIDWV 452
Query: 656 ENHLYEIFDSAENPI-NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
H +I +A +P+ NG WWL P Q LA C +E S +SHL DG
Sbjct: 453 REHHEDILAAAGDPVANG--WWLKGSKPLQFLAWCFEYAEWQVFGD--SFLSHLSAGMDG 508
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
SCNGLQ+++A+ R+ + A NLV KP D+Y RV E+ + P P A
Sbjct: 509 SCNGLQNFSAMLRDEVGGKATNLVPMPKPQDIYG----RVGEVTTTLLLEVPPD-PLAFH 563
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT--DDRQLFAAACYAAK 832
+ L V+R LVK++VMT YG T E I + +G I D+ + AA Y +K
Sbjct: 564 NRWLAHGVNRSLVKRSVMTLPYGSTRFSCAEFIMQDYLREGLIPEFDELEHAKAAQYLSK 623
>gi|167841470|ref|ZP_02468154.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|424904041|ref|ZP_18327551.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
gi|390930019|gb|EIP87421.1| DNA-directed RNA polymerase [Burkholderia thailandensis MSMB43]
Length = 818
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 162/629 (25%), Positives = 279/629 (44%), Gaps = 68/629 (10%)
Query: 214 PHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMA 273
P+ ++ W PL++ IE E + ++AA+ ++ L VA I + ++ VM
Sbjct: 39 PYAAAVYRRWLLPLADVIEAEVQSTGKAGRRAAHVALLKPLDPRAVAHIAVRSVLVSVMQ 98
Query: 274 GHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRV 333
D V A +G + E+ + +F + K + A +L RV
Sbjct: 99 ADND----VRTTARLLGRHVYGELVLSTF----AHGKPEIYWALMRNLLENRSTAAAHRV 150
Query: 334 NSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDV 393
N + + E E W + ++ L+E L V DV
Sbjct: 151 NVIRNAANSHEV-------ELPQWLPSDREQVALWLIEQLRLLGMV------------DV 191
Query: 394 RPAFRHRFKTILKHPGQKTTKRYGVVECDPL--VLEGLDRSAKHMLIPYVPMLVPPKKWK 451
KT+ K GQ+ + ++ V+ + + +H + +P + PK W
Sbjct: 192 T-------KTLRKGLGQRLSTEMDIMLTAQAQDVVSSIRGTVEHTMPYSLPFIEQPKDWI 244
Query: 452 GYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNK 505
GGY PSYV T +R+ +A++ + M V A++ L + KWRVN+
Sbjct: 245 SMFDGGYHTGMMRRQTPSYVNLTK-NRRTLDAMRDLD---MPDVRSAINHLQAVKWRVNQ 300
Query: 506 QVLSVLESIWVSGGNIAGLVDRNDVLIPEKP--LSEDM----------TEVQKWKWSVRK 553
+VL ++ G ++ ++ + + P +P L++DM E WK + +
Sbjct: 301 RVLDAVKDCARHGIDMDEIISQAEQPKPPRPEWLTDDMRKEDMTGDELVEFSGWKRRMAE 360
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
+ R ++ + +A + K+ Y+ + DFRGR Y ++ SD+ +
Sbjct: 361 WHTDRKLRGTRWGRFYMATRMADKFKEYPAIYFLYQADFRGRLYAQTTGISPQGSDLQKS 420
Query: 614 VLEFAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+L+FAEG+ L +RW KI AN F GV+K+ + R+A+V I A +P++
Sbjct: 421 LLQFAEGKRLDTPEAVRWFKIAGANRF--GVDKVPFEDRIAWVNQREQFILQFAADPVS- 477
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
R W A+ P Q LA C ++ +S P + S + + DGSCNGLQH++A+ R+++
Sbjct: 478 HREWQDADSPLQFLAWCFEYADWRQS--PDTFESRIAVGLDGSCNGLQHFSAMLRDSVGG 535
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ--ALLAKILIDQVDRKLVKQT 790
AVNLV G++P D+Y ++A V +K P +H + K ++R +VK++
Sbjct: 536 RAVNLVPGDRPNDIYQQVADVV--ALKLADPNLPLRHERDSVFKGKWKAHGMNRSIVKRS 593
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITD 819
VMT YG T E I +KG T+
Sbjct: 594 VMTLPYGSTRFSCAEFIVEDYLKKGAATE 622
>gi|19547987|gb|AAL87357.1| At1g68990/T6L1_17 [Arabidopsis thaliana]
Length = 305
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 119/176 (67%), Gaps = 7/176 (3%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEK--TKNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIK 338
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLME 302
>gi|15505|emb|CAA24333.1| unnamed protein product [Enterobacteria phage T7]
Length = 883
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 178/680 (26%), Positives = 293/680 (43%), Gaps = 111/680 (16%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH ++AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTH----SKKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLS 573
+I ++R + +P KP DM W A + R + + L
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKTRLASLAVSALSSC 401
Query: 574 VARRMK----DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+++ + G R A M N +D+ +G L A+G+P+GK G
Sbjct: 402 LSKPISLLTIRPSGSLTTWTGAVRVYAVSM---FNPQGNDMTKGRLTLAKGKPIGKEGYY 458
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC 689
WLKIH AN GV+K+S R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 459 WLKIHGAN--CAGVDKVSFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFC 515
Query: 690 INLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADV 746
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+
Sbjct: 516 FEYA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDI 570
Query: 747 YSEIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLV 787
Y +A +V+EI++ D+ +AL + L V R +
Sbjct: 571 YGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVT 630
Query: 788 KQTVMTSVYGVTFVGAREQI 807
K++VMT YG G R+Q+
Sbjct: 631 KRSVMTLAYGSKEFGFRQQV 650
>gi|449669690|ref|XP_002168863.2| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 404
Score = 159 bits (401), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 115/172 (66%), Gaps = 10/172 (5%)
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
E F S N G +WW DP+Q L ACI ++ AL+S P S +++ P+H DGSCNGLQ
Sbjct: 48 ETFKSWVN--KGKQWWREGTDPWQTLVACIEITNALRSPDPSSYVTYAPVHMDGSCNGLQ 105
Query: 721 HYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID 780
HYA+LG+++ A VNL +KP DVYSE+A+ V + +RD++K + LAK L
Sbjct: 106 HYASLGQDSYGARQVNLTPADKPQDVYSEVALLVEKARQRDASKGDT------LAKELDG 159
Query: 781 QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAK 832
++ RK+VKQTVMT VYGVTFVG R QI+++L+E G +++D +F A+ Y K
Sbjct: 160 KITRKVVKQTVMTVVYGVTFVGGRLQIEKQLKEMG-VSNDI-IFKASVYIVK 209
>gi|31711650|ref|NP_853568.1| DNA-directed RNA polymerase [Enterobacteria phage SP6]
gi|31505654|gb|AAP48747.1| gp8 [Enterobacteria phage SP6]
gi|40787026|gb|AAR90000.1| 7 [Enterobacteria phage SP6]
Length = 874
Score = 159 bits (401), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 156/631 (24%), Positives = 278/631 (44%), Gaps = 85/631 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDATLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++TQ ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P ++PP+ W+ GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ G L+W I+ ANL+ G +K + D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDAPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGTELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ R L K+ VMT YG T + RE +
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESV 642
>gi|133451|sp|P06221.1|RPOL_BPSP6 RecName: Full=DNA-directed RNA polymerase
gi|15463|emb|CAA68288.1| unnamed protein product [Shigella phage Sf6]
Length = 874
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 156/631 (24%), Positives = 278/631 (44%), Gaps = 85/631 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDATLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++TQ ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P ++PP+ W+ GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ G L+W I+ ANL+ G +K + D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDAPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGTELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ R L K+ VMT YG T + RE +
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESV 642
>gi|266634771|gb|ACY78114.1| putative DNA-dependent RNA polymerase [Acinetobacter phage phiAB1]
Length = 804
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 197/416 (47%), Gaps = 44/416 (10%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R + + ++ N
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKHWVIDNLN-NG 276
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----- 540
+ V A++ S +R+NK +L++L I GL P P ++D
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPKPAFPFTDDWLKSE 336
Query: 541 -----MTEVQKWK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
+ + Q WK W ++AK++ ++ EL + +DEE Y+P +
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELV-----KYQDEERLYFPTFI 391
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
D+RGR Y +N S+D +G LEFAEG+PLGK+GL+WLKIH+AN G +K D
Sbjct: 392 DWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDL 448
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISH 707
+ + +++ I + NP + + A +P F L A + L AL+ +P S I H
Sbjct: 449 KEKWCDDNWNYIQNFINNPFD-----VEAPEPDTAFTLLQAGLALQSALELETPESYICH 503
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+ D +C+GLQH +AL R+ + NL+ + D S+I +RV I D +K
Sbjct: 504 VPVAMDATCSGLQHLSALTRDEVGGLYTNLL--DNGEDQKSDIYMRVAHIA--DESKLEL 559
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
A+ + + R + K+ VMT VYG + + + + E G D+ QL
Sbjct: 560 ADSPAVRQYWVDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQL 613
>gi|312062870|gb|ADQ12732.1| putative RNA polymerase [Acinetobacter phage phiAB1]
Length = 805
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 197/416 (47%), Gaps = 44/416 (10%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R + + ++ N
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKHWVIDNLN-NG 276
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----- 540
+ V A++ S +R+NK +L++L I GL P P ++D
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPKPAFPFTDDWLKSE 336
Query: 541 -----MTEVQKWK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
+ + Q WK W ++AK++ ++ EL + +DEE Y+P +
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELV-----KYQDEERLYFPTFI 391
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
D+RGR Y +N S+D +G LEFAEG+PLGK+GL+WLKIH+AN G +K D
Sbjct: 392 DWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDL 448
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISH 707
+ + +++ I + NP + + A +P F L A + L AL+ +P S I H
Sbjct: 449 KEKWCDDNWNYIQNFINNPFD-----VEAPEPDTAFTLLQAGLALQSALELETPESYICH 503
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+ D +C+GLQH +AL R+ + NL+ + D S+I +RV I D +K
Sbjct: 504 VPVAMDATCSGLQHLSALTRDEVGGLYTNLL--DNGEDQKSDIYMRVAHIA--DESKLEL 559
Query: 768 KHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
A+ + + R + K+ VMT VYG + + + + E G D+ QL
Sbjct: 560 ADSPAVRQYWVDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQL 613
>gi|108862033|ref|YP_654105.1| putative RNA polymerase [Enterobacteria phage K1-5]
gi|19338936|gb|AAL86891.1|AF478466_1 putative RNA polymerase [Enterobacteria phage K1-5]
Length = 875
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 181/707 (25%), Positives = 307/707 (43%), Gaps = 118/707 (16%)
Query: 155 LKGLYKRIKLQEYREMKK---RKFNLLRRRQVKQETE---AWERMVDEYKELEAKMIEKR 208
++GL+ I+LQ EM R+F ++RQ+ E AW R R
Sbjct: 1 MQGLHA-IQLQLEEEMFNGGIRRFEADQQRQIASGNESDTAWNR---------------R 44
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKM 267
L L P++E I+ ++ K+ +A A I + + A I M +
Sbjct: 45 LLSEL----------IAPMAEGIQAYKEEYEGKRGRAPRALAFINCVENEVAAYITMKIV 94
Query: 268 MGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKE 325
M ++ + D +Q + A+++ IE ++R Y K KK + SK
Sbjct: 95 MDML---NTDVTLQAI--AMNVADRIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASKT 144
Query: 326 KELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNP 385
K +++ K V + E W +DT ++G L+E+L + +
Sbjct: 145 KSYRHAHNVAVVAEKSVADRDADFSRWEA--WPKDTLLQIGMTLLEILENSVFFNG---- 198
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVP 442
+P F +T G K Y ++ V E + +H+ L P Y P
Sbjct: 199 --------QPVFLRTLRT----NGGKHGVYY--LQTSEHVGEWITAFKEHVAQLSPAYAP 244
Query: 443 MLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
++PP+ W GG+ + S + G+R E ++ +T M +V++A++ L +TK
Sbjct: 245 CVIPPRPWVSPFNGGFHTEKVASRIRLVKGNR---EHVRKLTKKQMPEVYKAVNALQATK 301
Query: 501 WRVNKQVLSVLESIW---VSGG--NIAGLVDRNDVLIPEKP------------LSEDMTE 543
W+VNK+VL V+E + + G + L+DR + P P L E +T
Sbjct: 302 WQVNKEVLQVVEDVIRLDLGYGVPSFKPLIDRENK--PANPVPLEFQHLRGRELKEMLTP 359
Query: 544 VQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
Q WK K +R S+ T + AR+ + Y+ + LD R R Y
Sbjct: 360 EQWQAFINWKGECTKLYTAETKRGSKSAATVRMVGQARKYSQFDAIYFVYALDSRSRVYA 419
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVEN 657
L+ S+D+ + +L F EG+ L + L+W ++ AN + G +K + D R A V +
Sbjct: 420 QSSTLSPQSNDLGKALLRFTEGQRLDSAEALKWFLVNGAN--NWGWDKKTFDVRTANVLD 477
Query: 658 HLYEIF--DSAENPINGSRWWLTAEDPFQCLAACINLS---EALKSSSPHSVISHLPIHQ 712
++ D A +P+ ++W + A+ P+ LA C + +AL + ++HLP+HQ
Sbjct: 478 SEFQDMCRDIAADPLTFTQW-VNADSPYGFLAWCFEYARYLDALDEGTQDQFMTHLPVHQ 536
Query: 713 DGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRV----HEIMKRDSNKDPSK 768
DGSC+G+QHY+A+ R+ + A AVNL + P D+Y +A V + M + + +
Sbjct: 537 DGSCSGIQHYSAMLRDAVGAKAVNLKPSDSPQDIYGAVAQVVIQKNYAYMNAEDAETFTS 596
Query: 769 HPQALLAKIL--------IDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L L + + R L K+ VMT YG T + RE +
Sbjct: 597 GSVTLTGAELRSMASAWDMIGITRGLTKKPVMTLPYGSTRLTCRESV 643
>gi|378406358|gb|AFB82771.1| RNA polymerase [Vibrio phage phi-A318]
Length = 928
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 161/681 (23%), Positives = 286/681 (41%), Gaps = 108/681 (15%)
Query: 226 PLSEAIEREQKMQRTKKQK-AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQ 284
P+++AI+ ++ K +A H++ L + A I + + ++ HE +
Sbjct: 53 PMADAIQAYIDYYTGRRGKPSACLMHLKCLSPEAAAYIAIKTIFD-GLSNHE---ITAQN 108
Query: 285 AAVHIGMAIEQEIR-----------IHSFLEKTKNYKRKKIIADTEEVLSKEKEL-LRKR 332
A +IG IE E+R I + E K D + ++ EKEL L
Sbjct: 109 LANNIGRRIEDEVRFTKLNNAAPKYIQAIKESLKKRNSNSYKFDHDVMVHAEKELKLLAD 168
Query: 333 VNSLIKS-KRVMEAQKLLKNEETK------------------PWGRDTQAKLGSRLVELL 373
+L+ + + +E +LL + K PW + +LG++L+E+
Sbjct: 169 FQALLGAGEEKLEIMRLLSIDNDKYQHLLDKAEFAIDIDRWIPWSDNDVIQLGAKLIEIF 228
Query: 374 IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA 433
+ + D +P K + KTT + + ++G
Sbjct: 229 GKNMLM------------DGQPLIA---KQVNGQGRGKTTAKIVATDALETWIQGYKEVV 273
Query: 434 KHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 493
+M Y P +VPPK+WK GGY + ++ L+ +T M KV++AL
Sbjct: 274 GNMSPAYEPCVVPPKEWKSPFNGGYHSKEVSSNLPIAKVRDKKHLRRLTRKQMPKVYQAL 333
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPL--------SEDMTEV- 544
+ L + KW++N + ++ I + + G+ + P P+ ED+ +V
Sbjct: 334 NALQNVKWQINPSIYAIANEIRLRELPL-GMPEFKKYNKPACPVPAIYSDLRGEDLMQVL 392
Query: 545 --------QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ WK + +R S + L A + KD E ++ + LDFRGR
Sbjct: 393 DDDQKAAFKNWKRQIASIYAKENKRKSDVREVVATLDQANKFKDFENLHFVYTLDFRGRV 452
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y ++ D+ + ++ FA+ PLG +G W K+H AN++ G +K + R++ E
Sbjct: 453 YCHSSLVSPQGGDLQKALIRFADSMPLGSTGAYWFKVHGANVW--GWDKETFAERVSRCE 510
Query: 657 NHLYE--IFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL----KSSSPHSVISHLPI 710
++ D A +PI + W A+ P+Q LA C + L + ++ SH+ +
Sbjct: 511 TEEFKEMCLDIAADPITFTD-WTKADKPWQFLAWCYEYAALLEWIDEGNNEQDFPSHIAV 569
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770
DGSC+G+QHY+A+ R+++ VNL+ EKP D+Y ++ V E M+ +N D P
Sbjct: 570 AMDGSCSGIQHYSAMLRDSVGGKEVNLLPSEKPQDIYGAVSKVVVEWMEAITNNDERDCP 629
Query: 771 ------QALLAKI------------------------LIDQVDRKLVKQTVMTSVYGVTF 800
+L+AK L V R + K+ VMT YG +
Sbjct: 630 IYDKLIDSLVAKFEKAKLTGDLESKARIMAYKFCEEWLRIGVTRSMTKKPVMTLPYGSSQ 689
Query: 801 VGAREQIKRRLEEKGHITDDR 821
+ R+ I L++ D++
Sbjct: 690 LTCRDSIADYLKDLQEKADNK 710
>gi|414087588|ref|YP_006987773.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
gi|383396018|gb|AFH19836.1| putative RNA polymerase [Enterobacteria phage vB_EcoP_ACG-C91]
Length = 875
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 164/632 (25%), Positives = 280/632 (44%), Gaps = 86/632 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ K+ +A A I + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKRGRAPRALAFINCVENEVAAYITMKIVMDML---NTDVTLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+++ IE ++R Y K KK + SK K +++ K
Sbjct: 107 I--AMNVADRIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASKTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V + E W +DT ++G L+E+L + + +P F
Sbjct: 160 SVADRDADFSRWEA--WPKDTLLQIGMTLLEILENSVFFNG------------QPVFLRT 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
+T G K Y ++ V E + +H+ L P Y P ++PP+ W GG
Sbjct: 206 LRT----NGGKHGVYY--LQTSEHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG 259
Query: 458 YLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
+ + S + GSR E ++ +T M V++A++ L +TKW+VNK+VL V+E +
Sbjct: 260 FHTEKVASRIRLVKGSR---EHVRKLTKKQMPAVYKAVNALQATKWQVNKEVLQVVEDVI 316
Query: 516 ---VSGG--NIAGLVDRNDVLIPEKP------------LSEDMTEVQ-----KWKWSVRK 553
+ G + L+DR + P P L E +T Q WK K
Sbjct: 317 RLDLGYGVPSFKPLIDRENK--PANPVPLEFQHLRGRELKEMLTPEQWQAFINWKGECTK 374
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
+R S+ T + AR+ + Y+ + LD R R Y L+ S+D+ +
Sbjct: 375 LYTAETKRGSKSAATVRMVGQARKYSQFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGKA 434
Query: 614 VLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPI 670
+L F EG+ L + L+W ++ AN + G +K + D R A V + ++ D A +P+
Sbjct: 435 LLRFTEGQRLDSTEALKWFLVNGAN--NWGWDKKTFDVRTANVLDGEFQDMCRDIAADPL 492
Query: 671 NGSRWWLTAEDPFQCLAACINLS---EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
++W + A+ P+ LA C + +AL + ++HLP+HQDGSC+G+QHY+A+ R
Sbjct: 493 TFTQW-VNADSPYGFLAWCFEYARYLDALDEGTQDQFMTHLPVHQDGSCSGIQHYSAMLR 551
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRV----HEIMKRDSNKDPSKHPQALLAKIL----- 778
+ + A AVNL + P D+Y +A V + M + + + L L
Sbjct: 552 DEVGAKAVNLKPSDSPQDIYGAVAQVVIQKNYAYMNAEDAETFTSGSVTLTGAELRSMAS 611
Query: 779 ---IDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ + R L K+ VMT YG T + RE +
Sbjct: 612 AWDMIGITRGLTKKPVMTLPYGSTRLTCRESV 643
>gi|449682634|ref|XP_004210133.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Hydra
magnipapillata]
Length = 645
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 143/232 (61%), Gaps = 5/232 (2%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+PM++PP+ W G YL L S +RT G K E K+ + ++F++L+ LG+
Sbjct: 373 LPMVMPPRPWVSLTSGAYLLLHSDFVRTVSGQYKLHELSKASKEGQLSRIFDSLNYLGNC 432
Query: 500 KWRVNKQVLSVLESIWVSGGNIA-GLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
W+VN ++L ++ ++ + G++ ++ + ++ + EDMT + K + R KK++
Sbjct: 433 GWKVNTKILDIMLEMFNNKGDMKLDIIGPIETMMQQYDYKEDMTAIDKKT-NKRLKKKLH 491
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
E + R D KLS++ +D+ F+ P+NLDFRGRAYP+ PH +H+ SD RG+L FA
Sbjct: 492 HELFALRMDLLYKLSISNHYRDK-IFWIPNNLDFRGRAYPIAPHCSHIGSDAARGLLLFA 550
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
+G+ LG++GL W+K+HL N+ G ++K S R+ + +NHL EI DSA+ P+
Sbjct: 551 KGKKLGENGLNWIKVHLVNV-HGHLKKSSLKERIEYADNHLEEIMDSADKPL 601
>gi|83571724|ref|YP_424976.1| putative RNA polymerase [Enterobacteria phage K1E]
gi|83308175|emb|CAJ29407.1| gp7 protein [Enterobacteria phage K1E]
Length = 875
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 163/632 (25%), Positives = 280/632 (44%), Gaps = 86/632 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ K+ +A A I + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKRGRAPRALAFINCVGNEVAAYITMKIVMDML---NTDVTLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+++ IE ++R Y K KK + SK K +++ K
Sbjct: 107 I--AMNVADRIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASKTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V + E W +DT ++G L+E+L + + +P F
Sbjct: 160 SVADRDADFSRWEA--WPKDTLLQIGMTLLEILENSVFFNG------------QPVFLRT 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
+T G K Y ++ V E + +H+ L P Y P ++PP+ W GG
Sbjct: 206 LRT----NGGKHGVYY--LQTSEHVGEWITAFKEHVAQLSPAYAPCVIPPRPWVSPFNGG 259
Query: 458 YLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW 515
+ + S + G+R E ++ +T M V++A++ L +TKW+VNK+VL V+E +
Sbjct: 260 FHTEKVASRIRLVKGNR---EHVRKLTKKQMPAVYKAVNALQATKWQVNKEVLQVVEDVI 316
Query: 516 ---VSGG--NIAGLVDRNDVLIPEKP------------LSEDMTEVQ-----KWKWSVRK 553
+ G + L+DR + P P L E +T Q WK K
Sbjct: 317 RLDLGYGVPSFKPLIDRENK--PANPVPLEFQHLRGRELKEMLTPEQWQAFINWKGECTK 374
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
+R S+ T + AR+ + Y+ + LD R R Y L+ S+D+ +
Sbjct: 375 LYTAETKRGSKSAATVRMVGQARKYSQFDAIYFVYALDSRSRVYAQSSTLSPQSNDLGKA 434
Query: 614 VLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPI 670
+L F EG+ L + L+W ++ AN + G +K + D R A V + ++ D A +P+
Sbjct: 435 LLRFTEGQRLDSAEALKWFLVNGAN--NWGWDKKTFDVRTANVLDSEFQDMCRDIAADPL 492
Query: 671 NGSRWWLTAEDPFQCLAACINLS---EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGR 727
++W + A+ P+ LA C + +AL + ++HLP+HQDGSC+G+QHY+A+ R
Sbjct: 493 TFTQW-VNADSPYGFLAWCFEYARYLDALDEGTQDQFMTHLPVHQDGSCSGIQHYSAMLR 551
Query: 728 NTLEAAAVNLVAGEKPADVYSEIAVRV----HEIMKRDSNKDPSKHPQALLAKIL----- 778
+ + A AVNL + P D+Y +A V + M + + + L L
Sbjct: 552 DAVGAKAVNLKPSDSPQDIYGAVAQVVIQKNYAYMNAEDAETFTSGSVTLTGAELRSMAS 611
Query: 779 ---IDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ + R L K+ VMT YG T + RE +
Sbjct: 612 AWDMIGITRGLTKKPVMTLPYGSTRLTCRESV 643
>gi|291235121|ref|XP_002737494.1| PREDICTED: CG4644-like, partial [Saccoglossus kowalevskii]
Length = 767
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 117/193 (60%), Gaps = 12/193 (6%)
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
EK S RL + + + +I DSA+NP G++WW TA++P+Q L+ C+ +++A++S P
Sbjct: 569 EKNSLQERLEYADTIMDDILDSADNPTTGNKWWQTADEPWQTLSCCMEVAKAVRSPDPTK 628
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSN 763
ISHLP+HQDGSCNGLQHYAALGR+ + A VNL + P DVYS +A +V E D+
Sbjct: 629 FISHLPVHQDGSCNGLQHYAALGRDVIGAQQVNLHPFDVPQDVYSGVAQKVEEARAIDA- 687
Query: 764 KDPSKHPQALLAKILIDQ---VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
A KI I+ V+RK+VKQTVMT VYGVT G QI ++L++ +
Sbjct: 688 --------ANGLKIAIELEGFVNRKIVKQTVMTVVYGVTKYGGHRQIVKQLKDLPDFPGN 739
Query: 821 RQLFAAACYAAKV 833
R A KV
Sbjct: 740 RVWAAGGYLVTKV 752
>gi|167564987|ref|ZP_02357903.1| DNA-directed RNA polymerase [Burkholderia oklahomensis EO147]
Length = 565
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 194/390 (49%), Gaps = 30/390 (7%)
Query: 455 KGGYLFLPSYVMR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLES 513
+GGYL L + ++ T S AL + EAL+ + T+WR+N+ VL V
Sbjct: 5 QGGYLTLKTDAVKSTEFSNAHTAALDAPLKGAH---LEALNHIQKTRWRINRDVLDVAMG 61
Query: 514 IWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKL- 572
V G ++G ++ +PE P D T + +K +R+ ++I+ E +++ LKL
Sbjct: 62 CKVRGLEVSGFPSAEEIPLPEYPAHLDKTSPE-FKTHIRERERIHTE-NARNAGMRLKLW 119
Query: 573 ---SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLR 629
+A + D ++PH DFRGR YP L+ + +G+LEF+E + G
Sbjct: 120 GLLQMAEELADFPALWFPHYADFRGRFYPRPQDLHTQGDSLVKGLLEFSEPVAITDRGWY 179
Query: 630 WLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR---WWLTAEDPFQCL 686
W+++++AN F G +KL D R + +HL I A +P++ + +W T + P++ L
Sbjct: 180 WMRVNVANYF--GQDKLPLDERAQWTLDHLEGILAVATDPLDDHKAFEFWSTCDSPWEFL 237
Query: 687 AACINLSEA----LKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
AAC + L + + S + D +C+G+QH AAL ++ A VN++
Sbjct: 238 AACSEVKRVCDFMLANGTCEGHESRMVCRYDATCSGIQHLAALMKDEKSAVRVNVLPTGN 297
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
D+Y ++A E++ D +D A A +V+RK VK+ VMT+ YGV+ G
Sbjct: 298 REDIYKDVA----EVVMADVQRDTVNSATAATASQWAGKVERKTVKRAVMTTPYGVSERG 353
Query: 803 AREQIKRRLEEKG---HITDDRQLFAAACY 829
I +L + G HI + ++ +AAA Y
Sbjct: 354 ----ILTQLIQDGFADHIENGKERYAAADY 379
>gi|441463031|gb|AGC35317.1| putative RNA polymerase [Acinetobacter phage AB3]
Length = 805
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 198/419 (47%), Gaps = 50/419 (11%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R +Q + + N
Sbjct: 218 SAARAVVKYPPMLIKPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKQWVIDKLN-NG 276
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED----- 540
+ V A++ S +R+NK +L++L I GL P P +ED
Sbjct: 277 AELVKAAMNKAQSVPYRINKDILAILRKAVAMRVGILGLPSYQPAPQPAFPFTEDWLKSE 336
Query: 541 -----MTEVQKWK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNL 590
+ + Q WK W ++AK++ ++ EL + +DEE Y+P +
Sbjct: 337 ATEEELDQFQFWKGLMSSWYTQEAKRVGRQHGILSRIQELV-----KYQDEERLYFPTFI 391
Query: 591 DFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDG 650
D+RGR Y +N S+D +G LEFAEG+PLGK+GL+WLKIH+AN G +K D
Sbjct: 392 DWRGRLY-FRSSINPQSNDCIKGCLEFAEGKPLGKTGLKWLKIHVAN--CCGYDKHDPDL 448
Query: 651 RLAFVENHLYEIFDSAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISH 707
+ + +++ I + NP + + A +P F L A + L AL P + + H
Sbjct: 449 KEKWCDDNWNYIKNFINNPFD-----VDAPEPDTAFTLLQAGLALQSALALPDPTTYVCH 503
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKD 765
+P+ D +C+GLQH +AL R+ + NL+ E+ +D+Y +A V + K +
Sbjct: 504 VPVAMDATCSGLQHLSALTRDEVGGLYTNLLDNGEEQKSDIYMRVA-HVADASKLELADS 562
Query: 766 PSKHPQALLAKILIDQ-VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
P+ + + D+ + R + K+ VMT VYG + + + + E G D+ QL
Sbjct: 563 PA------VRQYWSDKPISRNMAKKPVMTYVYGSKLLSTIQGLANDMYEAG--MDEIQL 613
>gi|456351031|ref|YP_007500985.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
gi|322227505|gb|ADW95214.1| RNA polymerase [Enterobacteria phage UAB_Phi78]
Length = 874
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 155/631 (24%), Positives = 276/631 (43%), Gaps = 85/631 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDVTLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++ Q ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKEAQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P +VPP+ WK GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVVPPRPWKTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSTFESIYFVYAMDSRSRVYAQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ L+W ++ ANL+ G +K D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVDSVEALKWFCVNGANLW--GWDKKIFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEAL---KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L + +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVEEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDTPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGAELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ R L K+ VMT YG T + RE +
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESV 642
>gi|167821777|ref|ZP_02453457.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 91]
Length = 769
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/382 (30%), Positives = 177/382 (46%), Gaps = 52/382 (13%)
Query: 442 PMLVPPKKWKGYNK-GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PMLVPP W ++ GGYL + G+R+ E+ + + AL+ L +T+
Sbjct: 224 PMLVPPVPWTTFSTHGGYLH--DQIPAVRGTRRPIES---------EVIVSALNALQATR 272
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
+RVN++VL V ++ + ++ G V + E M R+AK I
Sbjct: 273 FRVNRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTPESM----------RRAKTIR-- 320
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
+ L LS + DE+ FY+P NLD+RGR YP ++ +D+C+G LEFA+G
Sbjct: 321 -------SALTLSAFVELVDEDAFYFPWNLDWRGRMYPATSLISPQGADLCKGCLEFADG 373
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDG---------RLAFVENHLYEIFDSAENPIN 671
PLG+ G +WL IHL NL G +K++ G R A+ + I A +P N
Sbjct: 374 TPLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESTILRVAADPRN 431
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W+ A+ P+Q LAAC + + S L DGSC+G+Q A + R+
Sbjct: 432 NME-WMKADKPWQFLAACFEWVGYREEGD--AFRSRLAGALDGSCSGVQMLAGMTRDASA 488
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI---DQVDRKLVK 788
A VNLV E+ D Y +A E + + A +A++ +DR L+K
Sbjct: 489 GAMVNLVPSERGDDYYGRMA----EALSKRLCGLVDHADTATMARLQFWAEKSIDRDLLK 544
Query: 789 QTVMTSVYGVTFVGAREQIKRR 810
MT VY EQ++ +
Sbjct: 545 APSMTKVYSAGTYTFGEQVQNK 566
>gi|316934324|ref|YP_004109306.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
gi|315602038|gb|ADU44573.1| DNA-directed RNA polymerase [Rhodopseudomonas palustris DX-1]
Length = 842
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 113/386 (29%), Positives = 185/386 (47%), Gaps = 33/386 (8%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL----KSVTGNCMKKVFEALDT 495
++P PP W + GG + + + T + +E + +++ M+ +A+
Sbjct: 234 FLPSEEPPVPWSDFKGGGPVDPAARKLVTLVRTRHKETVAAVRRAIADGSMQPALDAVSA 293
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED---MTEVQKWKWSVR 552
+ + WR+N +L+V+ G ++ GL +++ +P P ED +++ +K V
Sbjct: 294 VQAVPWRINTAILNVMRECRRRGIDVEGLPPLHNLPMP--PPVEDYDSLSDEEKKLVRVE 351
Query: 553 KA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+A K N R E + A + E FY PHNLD+RGR YP+ N D
Sbjct: 352 RAAIKTANNSFVVDRMRFEGDMETAEALSRLEQFYIPHNLDWRGREYPLCT-FNFQRGDY 410
Query: 611 CRGVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAE-- 667
R + F + +P+G+ G+ WLK+HLAN G V K + D R+ + +++L I D A
Sbjct: 411 VRSLFLFKDAKPIGEEGIEWLKVHLANCGDFGKVSKKTFDKRIKWTDDNLERIKDCATKD 470
Query: 668 ----NPIN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
P+ +W A+ PF LAACI L+ AL + + LP DGSC+G QH
Sbjct: 471 WDCGGPLTPEALSFWTQADKPFLFLAACIELTNALAYGPGY--VCGLPCSWDGSCSGAQH 528
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781
A R+ +A VNL+ ++ D+Y+ + + M R KDP +++ IL
Sbjct: 529 LCAATRSE-DAWKVNLIGNDEVHDLYTIVGNAAKQSMAR--AKDP------MVSTILAYD 579
Query: 782 VD-RKLVKQTVMTSVYGVTFVGAREQ 806
D RK+ K+ MT+ YG G +Q
Sbjct: 580 GDWRKVFKRNTMTTFYGSKGFGMAQQ 605
>gi|385304971|gb|EIF48970.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 391
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 195/405 (48%), Gaps = 40/405 (9%)
Query: 247 YAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL-EK 305
Y P I L+ +KVA+I + ++M + R V V + + + ++E E + L
Sbjct: 3 YGPFIXLMKPEKVAIITILEVMKNCVTSDIARGVPVSKVVMSVSKSLELEYKSEKVLASD 62
Query: 306 TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA--QKLLKNEETKP------W 357
Y + I T E K LR + ++++++ A +K L+N + W
Sbjct: 63 VDXYXNFRAIRKTPEF----KRFLRSK-----QAEKIIXAAERKSLRNXSIETETSQLLW 113
Query: 358 GRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTT 413
D+ ++GS L+ +L++ A V V D +V+ PAF H + ++ G
Sbjct: 114 DADSHCRVGSALISMLLQIAKVD--VEGVDPKTXEVKKALAPAFYHTYD--FQNGG---- 165
Query: 414 KRYGVVECDPLVLE--GLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGS 471
+ GV++ + G DR + + Y+PM+ P+ W YN GGY V+R+ +
Sbjct: 166 -KVGVIKVNQRFSSKLGKDRLDQSIQAQYLPMIARPRPWTTYNDGGYYLKRCLVLRSKNA 224
Query: 472 RKQQEALKSVT-GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV 530
+Q K+ M KV L+ LG+T W VNK++L ++ +W +G + +
Sbjct: 225 PEQFAYAKAAAMSGKMDKVLSGLNALGNTSWTVNKRILELMTQVWNTGKAFLEIPKAEEK 284
Query: 531 LIPEKPLSE--DMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPH 588
LI KP ++ + E+ +++ R + S RCD KL +AR E ++PH
Sbjct: 285 LILPKPPAKGAEPIEIFRYRRDCRDKCNAFAKDRSMRCDMNYKLEIARAFLGER-IFFPH 343
Query: 589 NLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+LDFRGRAYP+ P+ NHL +D+ RG+L F GR S RW+K+
Sbjct: 344 SLDFRGRAYPIPPNFNHLGNDLTRGLLRFL-GRKEAWS--RWIKM 385
>gi|426386358|ref|XP_004059652.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Gorilla
gorilla gorilla]
Length = 370
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 107/151 (70%), Gaps = 8/151 (5%)
Query: 665 SAENPIN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+A +P++ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNGLQHY
Sbjct: 48 TAPHPLSPQGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHY 107
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L +
Sbjct: 108 AALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------TRVAQVLEGFI 161
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 162 TRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 192
>gi|355755256|gb|EHH59003.1| DNA-directed RNA polymerase, mitochondrial [Macaca fascicularis]
Length = 1119
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/154 (48%), Positives = 105/154 (68%), Gaps = 9/154 (5%)
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
G +WW+ AE+P+Q LA C+ ++ A++ S P + +SHLP+HQDGSCNGLQHYAALGR+++
Sbjct: 764 QGRKWWMGAEEPWQTLACCMEVANAVRCSDPAAYVSHLPVHQDGSCNGLQHYAALGRDSV 823
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQT 790
AA+VNL + P DVYS +A +V ++D+ + +A++L + RK+VKQT
Sbjct: 824 GAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------TRVAQMLEGFITRKVVKQT 877
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLF 824
VMT VYGVT G R QI++RL E +TD Q F
Sbjct: 878 VMTVVYGVTRYGGRLQIEKRLRE---LTDFPQEF 908
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PW Q +LG +L E+L++ + ++ + + P H + + +
Sbjct: 547 QPWPLPVQMELGKQLAEMLVQATRMPSSLD-NRHGSSRLVPVLYHVYSF-------RNVQ 598
Query: 415 RYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HG 470
+ G+++ P ++ L+ +A+ L VPML PP W + G +L P+ +MRT G
Sbjct: 599 QIGILKPHPAYVQLLETAAEPTLTFEAVDVPMLCPPLPWTSPHTGAFLLSPTKLMRTVEG 658
Query: 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ + QE L++ + +AL LG+ WRVN +VL ++ ++ + G
Sbjct: 659 ATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKG 707
>gi|158345171|ref|YP_001522878.1| putative RNA polymerase [Enterobacteria phage LKA1]
gi|114796467|emb|CAK25005.1| putative RNA polymerase [Pseudomonas phage LKA1]
Length = 811
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 117/416 (28%), Positives = 188/416 (45%), Gaps = 40/416 (9%)
Query: 443 MLVPPKKWKGYNKGGY------LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTL 496
M P W G GGY + P + + + ++ G C V + L
Sbjct: 234 MFAEPTPWDGAAGGGYYTERMKIDFPLRRVNRRTRKPLRRVIRDNVGKC-TDVLACANYL 292
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP----------EKPLSEDMTEVQK 546
+ + ++ L +++ +W SGG G+ R P + ++
Sbjct: 293 QAQAFSIHTPTLELIKQVWNSGGGALGIPKREAPPEPAFPFPETWDKDSATEAELERFAS 352
Query: 547 WK-----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHP 601
WK W + K K++ + + Q L++S + ++P +D RGR Y
Sbjct: 353 WKRRMHAWHMGK-KELRKAQ--QGIGQALRVSAGAAAR----VWFPTFIDSRGRYY-YRG 404
Query: 602 HLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYE 661
LN ++C+ +L FA+ RPLG+ GL W+++H+AN F G +K D R A+ E
Sbjct: 405 VLNPQGDEMCKALLHFADKRPLGERGLYWIQVHVANCF--GEDKARFDARAAWAVERKAE 462
Query: 662 IFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
+F + E P + + A+ P AA EA +S +P + + LPIH D +C+GLQH
Sbjct: 463 LFAALEAPADSC--FAEADTPLGAFAAVWEWREAERSGNPAAYCTGLPIHMDATCSGLQH 520
Query: 722 YAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
++A+ R+ + VNL G+ AD+Y ++A + RD+ SK LAK+
Sbjct: 521 FSAMLRDPVGGQYVNLYDSGGDSKADIYRKVAEVAQTRINRDAANPASKDWH--LAKLWT 578
Query: 780 D-QVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT-DDRQLFAAACYAAKV 833
++ R L K VMT VYG T G E I LEE+ I D ++F A Y +V
Sbjct: 579 QWEIPRTLAKGPVMTYVYGATLRGVAEGIADWLEEQQAIVPDGVRIFDLAYYLGRV 634
>gi|385304972|gb|EIF48971.1| mitochondrial rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 450
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 110/165 (66%), Gaps = 10/165 (6%)
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ EI DS E+P +G ++W+ A+ P+Q LA + L +A++ P +SH P+HQDG+CNG
Sbjct: 1 MNEIIDSVEHPFDGKKFWVEADHPWQFLATAMELKDAMELPDPTQFVSHQPVHQDGTCNG 60
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALG + A VNLV +KP+D+Y+ ++ V +++ D+ K P A + +
Sbjct: 61 LQHYAALGGDXEGAEHVNLVPNDKPSDIYTRVSKIVQQMVDEDAEKGV---PDARRTQNI 117
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE----KGHITD 819
I RKLVKQTVMTSVYGVT+VGAR QI +RL+E + H++D
Sbjct: 118 I---TRKLVKQTVMTSVYGVTYVGARAQIVKRLKEIDFDEDHLSD 159
>gi|148724458|ref|YP_001285424.1| RNA polymerase [Cyanophage Syn5]
gi|145588103|gb|ABP87922.1| RNA polymerase [Synechococcus phage Syn5]
Length = 779
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 164/662 (24%), Positives = 293/662 (44%), Gaps = 90/662 (13%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAI-ER 233
F+L+ R Q+++ETEA E ++ + E+ A + + + P+++ I ER
Sbjct: 3 FDLIAR-QLQRETEAAELARKRLQDARREANERSYASSNIESRKAIATFLDPIAQRIGER 61
Query: 234 EQKMQRTKKQKAAYAPHIELLPADK--VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGM 291
++R A + L AD +A+I M + ++ +D Q+ Q IG
Sbjct: 62 LFTLRRGTGAVDAAEVYKHLKNADHHHLALITMKTALDVL---GKDPEPQIQQLTTAIGR 118
Query: 292 AIEQEIRIHSFLEKTKN-YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK 350
I+ E+R+ + E+ YK+ ++ +++ + N +
Sbjct: 119 NIQLELRLTYYAEENPELYKQASRFFHAGTGTRQKATVIKLKFNR--------------E 164
Query: 351 NEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPG 409
E W R T K+G L+ + + T +++ + R + + KT + +
Sbjct: 165 GIEWDQWSRVTCHKVGQWLMLAMADVTGWIERATD---------RTSGGRKTKTRICYSR 215
Query: 410 QKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSY 464
+ R ++ +A+ + PML PP +W + GGYL +
Sbjct: 216 EFLQHRDTILA-----------AAEQLAFCQWPMLCPPIEWSNDHNGGYLSEQIRRVNPL 264
Query: 465 VMRTH--GSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIA 522
+ +T G+RKQ + ++ L+ L ++VN +VL + + S +
Sbjct: 265 IRKTGPLGTRKQGDIPLAM-----------LNNLQGQAYKVNPEVLDIANHCYESNVTVG 313
Query: 523 GLVDRNDVLIPEKPLSEDMTEVQ--KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
+ + +P P ED TE Q +K + R+A+ N + + T + VAR+ D
Sbjct: 314 KFIRHAPLPVPPSP-GEDCTEDQLTAYKRARREAEDFNAQISQKNWRTTEVMYVARKYAD 372
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
E F+ P + D+RGR Y ++ LN +D + +L FAE P+ + WL H+A +
Sbjct: 373 EASFWMPASFDYRGRVYFLNTALNPQGTDFDKALLYFAEEGPVNEW---WLSFHVATTY- 428
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDS-AENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
G++K + R+ + ++ +E+ D A +P+ + W A++P+ LAAC+ +
Sbjct: 429 -GLDKETMVNRVQWARDN-HELIDRIASDPVRHTE-WHDADEPWCFLAACLEYKACVIDG 485
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+ + S LPI D +C+GLQH AA+ R AA VN+ +KPAD Y +A
Sbjct: 486 TKQT--SGLPIGIDATCSGLQHLAAMTRCGRTAALVNVTPTDKPADAYKTVA-------- 535
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
+ KH L K + + RK+ K+ VM + YGVT AR I+ +L + GH D
Sbjct: 536 ----QASLKH----LPKEQHEWITRKVTKRPVMCTPYGVTMSSARGYIRDQLVKDGHKED 587
Query: 820 DR 821
R
Sbjct: 588 LR 589
>gi|448260253|ref|YP_007348349.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
gi|428231494|gb|AFY63147.1| DNA-dependent RNA polymerase [Cronobacter phage vB_CskP_GAP227]
Length = 816
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 166/623 (26%), Positives = 283/623 (45%), Gaps = 94/623 (15%)
Query: 246 AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK 305
AY+P + L D VA++ + + + L +AG VQ IG + E+ + +F +
Sbjct: 72 AYSPLLFSLDMDAVALLAISEALKLCVAG----PVQATTLGFAIGKVLYGELALAAFRDM 127
Query: 306 TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKL 365
N + + D + +SK+ LR R+ M+AQK E W + ++
Sbjct: 128 NANL-YEVLTEDLQRKMSKD---LRHRMTIF-----RMQAQK--NGIELPEWTPTQKLQV 176
Query: 366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
G ++ L+ S P+ + LK G+KT +Y +V+ P +
Sbjct: 177 GMYVMGLM---------------STPNEDGEVL--LENTLKSYGKKT--KY-MVDLAPEI 216
Query: 426 ---LEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT----HGSRKQQEAL 478
++G++ S P L+PP+ W G +G F +R GS Q E +
Sbjct: 217 HKLMQGIEGSIIGRSGFAAPCLIPPQDWTG-EEGVGGFHGDLKIRAVRFFKGSTYQWEVM 275
Query: 479 KSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDV---LIPEK 535
S G+ + L+ W+VN +L +L+ + G I V+ + + PE+
Sbjct: 276 NS-EGHNPEVTLAMLNAHQKVAWKVNPFILDLLKGMRYHGYGIRKKVEFSSAHEKIKPER 334
Query: 536 -----PLSE-DMTEVQK-----WKWSVR----KAKKINQERHSQRCDTELKLSVARRMKD 580
+ E D T+VQ+ WK +R +AK+I R RC+ + +S A+ +
Sbjct: 335 LEWLDTVKEGDFTDVQQYNFETWKRKMRDWHTEAKRIG--RVELRCN--MAISAAQEVST 390
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-SGLRWLKIHLANLF 639
+ FYY + +D RGR YP+ LN SDV + +L A+G P+ L W K+ +A+ F
Sbjct: 391 LDRFYYVYQVDNRGRMYPVSGLLNPQGSDVQKSLLHAADGEPIDTPEALWWFKMGIASKF 450
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPI--NGSRWWLTAEDPFQCLAACINLSEALK 697
G++KL+ + + +V+++ I +A +P+ + WW A+ P Q +A C
Sbjct: 451 --GIDKLAPEDCVKWVDDNHANIIRAAGDPLDRDAFNWWTGADKPLQFIALCDEYRR--Y 506
Query: 698 SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVH 755
+ P +S + + DG+CNGLQ+Y+A+ R+++ A NL++ + P D+Y ++A
Sbjct: 507 NEDPAGFVSRIAVAMDGTCNGLQNYSAMLRDSVGGRATNLISADNGIPNDIYGDVA---K 563
Query: 756 EIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
KR + S L + DR L K++VMT VYG TF R+ I
Sbjct: 564 ASFKRLGRMEASN----LRTDWVNYGFDRSLTKKSVMTQVYGSTFGTCRKSIIEYCY--- 616
Query: 816 HITDDRQLFAA-----ACYAAKV 833
D+Q+F A YAA++
Sbjct: 617 ----DKQIFEGTEYDHADYAARL 635
>gi|32128444|ref|NP_858979.1| DNA-dependent RNA polymerase; phage monosubunit type [Xanthomonas
phage Xp10]
gi|31788507|gb|AAP58699.1| 32L [Xanthomonas phage Xp10]
Length = 746
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 194/409 (47%), Gaps = 60/409 (14%)
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQE 476
D + + ++R+A Y+P + P W Y GG+ L YV++ G E
Sbjct: 190 DDITAKTIERAAY-----YLPCVEQPMPWTSYASGGWHTAEMRRLMPYVIKGKG-----E 239
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEK 535
K++ + + +++L T WRVN ++L L+ IAG + ++++ +P+
Sbjct: 240 YHKALQAADLSQELACINSLQRTAWRVNARMLDALD-------QIAGKISIDEIVAVPD- 291
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+ +W +++ + + R+ Q +VA + Y+ + DFRGR
Sbjct: 292 ------ADAPRW---LKEEHRKTKNRYKQ------VRTVANKFLAYPAIYFVYFCDFRGR 336
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
Y M +N SD+ + +LEFA+G PL + + W I +N + G +K S R+ +
Sbjct: 337 KYAMGSGINPQGSDLQKCLLEFAKGMPLKDQQAVDWFMITGSNRY--GFDKCSLADRVQW 394
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
++ EI AE+P+ G +W A P Q LA C + A P + +S + DG
Sbjct: 395 CHDNHNEIIACAEDPLTG-LFWKGASKPLQFLAWCFEYA-AFIEQGP-AFVSRVSADMDG 451
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQH++A+ R+ + AAA NLV + P+D+Y+ +A + E + +D + P L+
Sbjct: 452 TCNGLQHFSAMLRDEIGAAATNLVPADLPSDIYAIVARKTQERL-----QDAERDPDGLV 506
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
K L ++R + K++ MT YG T R G + DD L
Sbjct: 507 EKWLQHGINRSITKRSTMTLPYGST----------RFSSAGFVRDDYLL 545
>gi|423262052|ref|YP_007010652.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
gi|399220984|gb|AFP33672.1| putative DNA-directed RNA polymerase [Pectobacterium phage PP1]
Length = 859
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 155/637 (24%), Positives = 277/637 (43%), Gaps = 89/637 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ +K K A ++ + + I M +M ++ + D +Q
Sbjct: 36 IAPMAEGIQTYKEHYTGRKGKPVRALAFLQCVENEVAGYITMKVVMDML---NTDVTLQA 92
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRV 342
V A+ I IE ++R S LE +K+ A + SK+ RV
Sbjct: 93 V--AMTIAERIEDQVRF-SKLEGVAAKYFEKVKASLQASRSKQYR----------HGHRV 139
Query: 343 M-EAQKLLKN-----EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
M A+K L E + W ++ ++G L+++L + + + P
Sbjct: 140 MVSAEKSLTERGEDVERWEAWPKEVCLQIGMTLLDILETSVFFEG------------EPV 187
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKG 456
F F+ I + G ++T E + + Y P ++PP+ WK G
Sbjct: 188 F---FRAI-RQNGVRSTYYLQTSETVGNWISEFREHVSQLAPAYAPCVIPPRPWKSPFNG 243
Query: 457 GYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI-- 514
G+ R + ++E ++ +T M V++A++ L T+W+VN VL+V + +
Sbjct: 244 GF-HSEKVASRVRLVKGKREHVRRLTPKQMPNVYKAINALQETQWQVNTDVLAVADDVVR 302
Query: 515 ---WVSGGNIAGLVDRNDVLIPEKP------------LSEDMTEVQ-----KWKWSVRKA 554
+ + L+DR++ P P L E + + Q WK +
Sbjct: 303 LNLGYGMPSFSPLIDRDNK--PNNPVPVEFQHLRGRELKEMLNDDQWSTFIAWKGECARL 360
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
+R S+ + AR+ + ++ + +D R R Y L+ S+D+ + +
Sbjct: 361 YTAETKRGSKSAAVVRMIGQARKYSKFDAIHFVYAMDSRSRVYAQSSTLSPQSNDLGKAL 420
Query: 615 LEFAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPIN 671
L+FAEGR + LRW + ANL+ G +K D R++ V + ++ D A +P+
Sbjct: 421 LKFAEGRSIATVEDLRWFCVCGANLW--GWDKKIFDTRVSNVLDDDFKEMCRDIAADPLT 478
Query: 672 GSRWWLTAEDPFQCLAACINLSEAL---KSSSPHSVISHLPIHQDGSCNGLQHYAALGRN 728
++W A++P+Q LA I + L + ++HLP+HQDGSC+G+QHY+A+ R+
Sbjct: 479 FTQW-AGADEPYQFLAWAIEYASYLDHVEDGRSSEFLTHLPVHQDGSCSGIQHYSAMLRD 537
Query: 729 TLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP--------------QALL 774
+ AAAVNL +P D+Y +A V I K +N D + +A+
Sbjct: 538 KVGAAAVNLSPSNEPQDIYGRVAQVV--IEKNTANMDAREEDVFTSGSLTLQGSVLRAMA 595
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+ + R L K+ VMT YG T + R+ + L
Sbjct: 596 SAWDCIGITRNLTKKPVMTLPYGSTRLTCRDAVADYL 632
>gi|402580131|gb|EJW74081.1| hypothetical protein WUBG_15011, partial [Wuchereria bancrofti]
Length = 250
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 133/235 (56%), Gaps = 27/235 (11%)
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG---------------------LV 525
+ VF+AL+ LG T W++N+ VL V ++ A +V
Sbjct: 4 RPVFDALNDLGITPWKINEPVLDVALKVFEMAQTNADEKFLEKLSIPIHPSRVPIPDYVV 63
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
++ I E P++ D E K K+ +A K E +S C +L++A K +
Sbjct: 64 KFGNMEIDELPIT-DWREYSKAKY---EAMKKRNELNSLWCWLLYRLTMANHFKGSV-LF 118
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+PH++DFRGR YP+ P+LNH+ D+ R +L FAEGRPLG GLRWLK+H NL +G ++K
Sbjct: 119 FPHSMDFRGRVYPITPYLNHMGDDLNRSLLVFAEGRPLGDDGLRWLKLHCINL-TGILKK 177
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSS 700
S+ R+A+ + L +I +SA NP++G WW +E+P+Q L+ACI + AL++ +
Sbjct: 178 ESNFSRVAYADEMLPKILESANNPLSGEMWWTKSEEPWQTLSACIEIRNALQTGN 232
>gi|289976616|gb|ADD21661.1| DNA-dependent RNA polymerase [Caulobacter phage Cd1]
Length = 817
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 159/651 (24%), Positives = 291/651 (44%), Gaps = 84/651 (12%)
Query: 182 QVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTK 241
Q++ E + ++ + + +K E A + P+ ++ + PL+ I+ + ++
Sbjct: 5 QIELERQMYDFGRSRAERMMSKNEEAGRASSNPYAAAIYRRFVLPLAAMIQDDLDNRKPG 64
Query: 242 KQKAAYAPHIELLPADKVAVIVMHKMMGLVMAG--------HEDRCVQVVQAAVHIGMAI 293
++KA +A +E + A+ ++ + + +G ++ G D Q A+ +G +I
Sbjct: 65 RRKA-HAVLLEGMDAEALSYLTVRSALGALLGGGTNMSGGRFGDYHPTARQLALDLGKSI 123
Query: 294 EQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEE 353
E + F E ++ D + LSK + R R+ M+A+K
Sbjct: 124 YHEKCLALFAEADPAL-FYTLVNDLDRRLSKSE---RHRMTVF-----KMQAEK--NGVP 172
Query: 354 TKPWGRDTQAKLGSRLVELLIETAYV--QHPVNPADYSPPDVRPAFRHRFKTILKHPGQK 411
WG + ++G+ L++LL V Q + P+ A + + + ++
Sbjct: 173 VPDWGTAGKTQVGAYLLDLLEALGMVETQQSLIPS---------ARKEKIRASIE----- 218
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIP---YVPMLVPPKKWKGYNKGGYLF-----LPS 463
V+ LE + R H+ Y+P + P W GG+ L
Sbjct: 219 -------VKMTTDTLELVSRIKDHVSATTPYYLPCVEKPMDWVSIRDGGFHTKEMRRLQP 271
Query: 464 YVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAG 523
+ +++ G R +++ + V A++ ST W+VN +L + + ++
Sbjct: 272 FAIKSAGLRSEED----FEEGDVSTVLGAINACQSTAWQVNGVMLDTIRQV-AKHFDMEE 326
Query: 524 LVDRNDVLIPEKPLSEDMTEVQKWKWSV--RKAKKINQERHSQRCDTELKL--------- 572
++ + + P KP D QK+ ++ + I+ +R + TE+KL
Sbjct: 327 ILSQAEFPAPPKP---DWLSDQKFDHMTPPQQEEFIHWKREKAQWFTEMKLRGTKYGRFF 383
Query: 573 ---SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-SGL 628
SVA + +D + Y+ + DFRGR Y ++ SD+ + ++ FA+G+ L
Sbjct: 384 TATSVADKFRDFDEIYFVYFADFRGRLYAQTTGISPQGSDMQKALIRFAKGKALDTVEAE 443
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
RW IH AN F G +K S D R+ + + + I AE+PI+ + +W A+ P Q LA
Sbjct: 444 RWFCIHGANKF--GFDKASLDDRVQWTKTNHNIIMACAEDPIS-NEFWQEADTPLQFLAW 500
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C +E +PH+ S LPI DG+CNGLQ+++A+ R+ + A NLV G P D+Y
Sbjct: 501 CFEYAEW--RYNPHTFESRLPIGMDGTCNGLQNFSAMLRDEVGGKATNLVPGALPNDIYK 558
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
+A + E + R S D + + LA ++R LVK++VMT YG T
Sbjct: 559 MVA-ELTEHLLRLSEPDDAGYRDKWLAH----GINRTLVKRSVMTLPYGST 604
>gi|398313069|emb|CCI88420.1| mitochondrial single-subunit RNA polymerase [Yersinia phage
phiR8-01]
Length = 810
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 167/683 (24%), Positives = 306/683 (44%), Gaps = 105/683 (15%)
Query: 189 AWE---RMVDEYKELEA--KMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQ 243
AWE R + K +E+ K E+ + P G+ + LS+ I + + K
Sbjct: 9 AWEHKHRELGRDKVMESLRKAEEQGRVTDTPLGTGVLRKYIMWLSQRIATDLTVDLGKPG 68
Query: 244 KA-AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSF 302
++ A++P ++ L D VA+I + ++ + ++R + V A+ IG I E+ + F
Sbjct: 69 RSKAHSPLLKDLDPDSVALITISSVINTL--SQDNRGLSAV--AMQIGKTIYGELALCYF 124
Query: 303 LEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQ 362
+ ++ + ++ D + +SK+ LR R+ VM Q W +
Sbjct: 125 RDMKEDL-YEAMVHDLTKKMSKD---LRHRLT-------VMRMQAEKAGVSIPEWTPSQK 173
Query: 363 AKLGSRLVELLI-ETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVEC 421
++G L+ L+ E V+ + +KTT + ++
Sbjct: 174 LQVGLYLLSLIDGEDGLVEQYTD----------------------FTNKKTTYK---LQL 208
Query: 422 DPLVLEGLDRSAKHMLIPYV----PMLVPPKKWKGYNKGGY-----LFLPSYVMRTHGSR 472
P V++ L SA+ ++ + P L+ P+ W G GG+ + P + G
Sbjct: 209 RPAVMQ-LMNSAESSILAHAGFAAPCLIQPQDWDGDGVGGFYGDLKIRAPRFF---KGDS 264
Query: 473 KQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI 532
Q E +K + G ++ V L+ S W+VN +L +++ + + G + +DV+
Sbjct: 265 YQMEVMKKL-GCDLRVVLGMLNAHQSVAWKVNPFILDLVKGMRLRG------YETDDVMF 317
Query: 533 ------PEKPLSEDMT---------EVQKWKWSVRKAKKINQERHSQRCDTELK--LSVA 575
P +PL D+ EV+ +W K + R R + +L + A
Sbjct: 318 TSAHPEPPRPLFLDLADKIGMTVPQEVEFKQWKQTKRDWHTKIRLVSRAEAKLSRVIYAA 377
Query: 576 RRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG-KSGLRWLKIH 634
+ M + F++ D RGR YP+ LN SD+ + +L A G P+ K +W K++
Sbjct: 378 QDMLEYSEFFFVFQTDDRGRMYPVSGPLNPQGSDMQKAMLHAAHGEPIADKVAEKWFKLN 437
Query: 635 LANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACINL 692
LA + GV+KL+ D + + ++ I +AE+P+N WW A+ P Q +A C
Sbjct: 438 LATKY--GVDKLNIDQCVQWTIDNHDNIMRAAEDPLNRDAFYWWSEADKPLQFIALCDEY 495
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA--GEKPADVYSEI 750
P + ++ + + DG+CNGLQ+Y+AL R+ + A NL+ G+ P D+Y ++
Sbjct: 496 RRY--HLDPVNFVARIAVAMDGTCNGLQNYSALLRDEVGGRATNLIGEDGDAPNDIYGDV 553
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKI--LIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
AV + + ++ + AK+ L + +R L K++VMT VYG TF R+ I
Sbjct: 554 AVAAEKRL---------QYAEECAAKLAWLKEGFNRGLTKKSVMTQVYGSTFGTCRKSIV 604
Query: 809 RRLEEKGHITDDRQLFAAACYAA 831
EK + +D++ + A +A+
Sbjct: 605 AYCVEKA-LFEDKERWEFADFAS 626
>gi|224108381|ref|XP_002333403.1| predicted protein [Populus trichocarpa]
gi|222836443|gb|EEE74850.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 93/138 (67%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
+ R +L+ + RK +LRRRQVK E EAWE EYKEL M E +LAPNLP++K
Sbjct: 64 FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKS 123
Query: 219 LFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
LFLGWF P ++AI +EQ++ R K + YAP+ +LLPADK++VI MH++ +VM G E
Sbjct: 124 LFLGWFEPFTDAIAKEQELIRMGKSRQGYAPYFDLLPADKMSVIAMHQLAAMVMTGGEHG 183
Query: 279 CVQVVQAAVHIGMAIEQE 296
C +VV AA IG AIE E
Sbjct: 184 CARVVTAACMIGDAIELE 201
>gi|76809902|ref|YP_333056.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254261887|ref|ZP_04952941.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
gi|76579355|gb|ABA48830.1| DNA-dependent RNA polymerase [Burkholderia pseudomallei 1710b]
gi|254220576|gb|EET09960.1| DNA-directed RNA polymerase [Burkholderia pseudomallei 1710a]
Length = 769
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 175/382 (45%), Gaps = 52/382 (13%)
Query: 442 PMLVPPKKWKGYNK-GGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PMLVPP W ++ GGYL + G+R+ E+ + + AL+ L +T+
Sbjct: 224 PMLVPPVPWTTFSTHGGYLH--DQIPAVRGTRRPIES---------EVIVSALNALQATR 272
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
+RVN++VL V ++ + ++ G V + E M R+AK I
Sbjct: 273 FRVNRRVLEVAQTFRTNAEDMGGAVINGRYIETRHDTPESM----------RRAKTIR-- 320
Query: 561 RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG 620
+ L LS + +E+ FY+P NLD+RGR YP ++ +D+C+G LEFA+G
Sbjct: 321 -------SALTLSAFAELVNEDAFYFPWNLDWRGRMYPATSLISPQGADLCKGCLEFADG 373
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDG---------RLAFVENHLYEIFDSAENPIN 671
LG+ G +WL IHL NL G +K++ G R A+ + I A +P N
Sbjct: 374 TSLGRDGGKWLAIHLCNL--AGEDKVTVGGKKVHRTPDEREAWTLSQESMILRVAADPRN 431
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W+ A+ P+Q LAAC + + S L DGSC+G+Q A + R+
Sbjct: 432 NME-WMKADKPWQFLAACFEWVGYREEGD--AFRSRLAGALDGSCSGVQMLAGMTRDASA 488
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI---DQVDRKLVK 788
A VNLV + D Y R+ + + + A +A++ +DR L+K
Sbjct: 489 GAMVNLVPAPRGDDYYG----RMADALSKRLCGLVDHADAATMARLQFWAEKSIDRDLLK 544
Query: 789 QTVMTSVYGVTFVGAREQIKRR 810
MT VY EQ++ +
Sbjct: 545 APSMTKVYSAGTYTFGEQVQNK 566
>gi|147843606|emb|CAN79881.1| hypothetical protein VITISV_017990 [Vitis vinifera]
Length = 305
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/88 (78%), Positives = 78/88 (88%)
Query: 747 YSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQ 806
+S I +VHEIMKRDSNKDP+ P+ALLAK+LI QVDRKLVKQTVMTSVYGVT++GAREQ
Sbjct: 40 HSSICTKVHEIMKRDSNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQ 99
Query: 807 IKRRLEEKGHITDDRQLFAAACYAAKVS 834
IKRRL EKG ITD+R LF AACYAAKV+
Sbjct: 100 IKRRLAEKGLITDERLLFTAACYAAKVT 127
>gi|224116184|ref|XP_002331982.1| predicted protein [Populus trichocarpa]
gi|222832106|gb|EEE70583.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 89/123 (72%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+ +LRRRQVK E EAWE+ EYKEL M E +LAPNLP++K LFLGWF P ++AI +
Sbjct: 9 KYRVLRRRQVKIEAEAWEQATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAK 68
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAI 293
EQ++ RT K + YA + +LLPADK++VI MH++ +V+ G E C +VV AA IG AI
Sbjct: 69 EQELIRTGKSRQGYASYFDLLPADKMSVIAMHQLAAMVVTGGEHGCARVVTAACMIGDAI 128
Query: 294 EQE 296
EQ+
Sbjct: 129 EQD 131
>gi|282554612|ref|YP_003347629.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
gi|262410445|gb|ACY66709.1| DNA-dependent RNA polymerase [Klebsiella phage KP34]
Length = 822
Score = 143 bits (360), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 118/414 (28%), Positives = 195/414 (47%), Gaps = 42/414 (10%)
Query: 442 PMLVPPKKWKGYNKGGYL--------FLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEAL 493
PMLVPP + GGYL + S++ RT R+ EA KS G + +AL
Sbjct: 244 PMLVPPVQHTTMWDGGYLTPIDNRGTYHNSHIDRTR-LREVAEAFKSADG-----IKKAL 297
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN----------DVLIPEKPLSEDMTE 543
+ T +R+NK++L +++ G + + R+ D + E E++
Sbjct: 298 NKAQETPYRINKRILELVQEARALGIGVG--MPRSVPEPKPEWYLDGVPKENYTEEELDR 355
Query: 544 VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY---PMH 600
+WK + +++R SQ L +A KDE+ Y+P +D+R R Y +H
Sbjct: 356 FGEWKTRMSLWYSADRKRVSQLRSLLTTLEMAEEFKDEKALYFPTCVDWRYRLYFKSSLH 415
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
P SD+ + +LEF G+PLG GL WLK+H+A F G +K + R A+V+ +
Sbjct: 416 PQ----GSDLQKALLEFGRGKPLGDRGLFWLKVHVATCF--GYDKTLFEDRAAWVDANFA 469
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
EI +P + + +A+ P+ LAA I+L A++S P IS +P+ D + +G Q
Sbjct: 470 EIEQLTVSPFDCPA-FTSADSPWCLLAAAIDLVNAVRSGCPEEHISRIPVAMDATNSGGQ 528
Query: 721 HYAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
H +AL R+ + NL +K AD+Y ++ R E + D +K+ +
Sbjct: 529 HLSALLRDPVGGRLTNLYWEGNDKKADLYMDVKRRTDEKVILDLDKEDFIIQSTYWRE-- 586
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH-ITDDRQLFAAACYAA 831
+++ R + K+ MT Y T + I +G+ TD L+ +CY A
Sbjct: 587 -NEITRSMTKRPSMTYFYSATVRSCSDYIFEGACAEGYEGTDTNSLWNLSCYLA 639
>gi|388549265|gb|AFK66464.1| DNA-directed RNA polymerase [Synechococcus phage S-CBP3]
Length = 776
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 121/463 (26%), Positives = 197/463 (42%), Gaps = 52/463 (11%)
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
+PWGR + KLG L++ + E + F+ GQKT
Sbjct: 170 EPWGRHNRVKLGGWLLDAIAEVS---------------------QWFEKSTVQEGQKTVN 208
Query: 415 RYGVVECDPLVLEGLDRSAKHMLIPYV-PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
Y V + + + + P PMLVPP W GGY+ + VM HG
Sbjct: 209 -YVVPTAEFMAVRDQIMRDAELFAPIAWPMLVPPNDWSNERAGGYIL--NEVM--HGYDL 263
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ + G K + L+ + + +N ++ V E++ + V + +P
Sbjct: 264 VRRGGPRIQG---KAPIDFLNKIQRVAYTLNPFIVEVAETLQERQTQVGKFVPIVSLDLP 320
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQR--CDTELKLSVARRMKDEEGFYYPHNLD 591
KP+ + + R A+ +N H+ R C T + + R K+ + FY P + D
Sbjct: 321 PKPVDIAENYEARKDYRRRAAETMNTNAHAFRRSCRTRMTMEAVARFKNVDRFYVPWSFD 380
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
+RGRAYP+ L +D + +L FA+ + WL+ A + G++K R
Sbjct: 381 YRGRAYPIPSFLTPQDTDFGKSLLRFADESYMTHEAEDWLRFQCATTY--GLDKAPMSER 438
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
LA+ + I A++PI+ W A++P+Q LAAC L + + + LP+
Sbjct: 439 LAWAHENEELIKRIAKHPIDCLSEWEVADEPWQFLAACDELYHCVLIADRQ--YTGLPVA 496
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
D +C+GLQ A L R+ A VN++ G++P D Y +A E K P+
Sbjct: 497 TDATCSGLQILAGLARDKSTAQLVNVLPGDRPQDAYKVVA----ETAK-------PHCPE 545
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
++ + DRK VK+ VMT Y R I+ L+EK
Sbjct: 546 SIQPYM-----DRKTVKRVVMTVPYNAKPYSNRGYIREALKEK 583
>gi|320158397|ref|YP_004190775.1| DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319933709|gb|ADV88572.1| possible DNA-dependent RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 927
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 171/340 (50%), Gaps = 18/340 (5%)
Query: 425 VLEGLDRSAKHMLIP-YVPMLVPPKKW--KGYNKGGYLFLPSYVMRTHGSRKQQEALKSV 481
+LE R + P Y PM+VPP+KW + +G YL P+ + + + L+ +
Sbjct: 248 LLEETQREIARLARPTYAPMVVPPRKWSPETVRRGAYL-TPAGRPLSMIKTRNKSYLREL 306
Query: 482 TGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI------WVSGGNIAGL--VDRNDVLIP 533
M+KV++AL+ + T R+NK + + L++ W + + +D D P
Sbjct: 307 QTAGMEKVYDALNRIQETPVRINKTIYNWLDTFLMQQLPWAMDIGLPAMHKLDIKD-YTP 365
Query: 534 EKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
+P L + V++++ + R+ + S+ + +A+ D + F+ P D
Sbjct: 366 TQPEGLPDSDYRVKEYQKACREFYLMEASERSKLSAMLGMMEMAKSYLDRDRFFVPWQGD 425
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
R R YP+ LN +D + + +FA+G LGK GL+WL IH+ANL GV+K++ + R
Sbjct: 426 TRMRVYPV-SKLNFQGADYVKALCQFADGVALGKHGLKWLMIHMANLM--GVDKVTFEER 482
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+ +V+ H +I A++P + ++A+ P Q +A L+EA + +S++PI
Sbjct: 483 VKWVKEHKAQIIALAKDPRECRDFLMSADKPMQAIACATELAEAWSMKNHEEFVSYIPIA 542
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIA 751
DGSC+GLQ A R VNL+ + AD+Y +A
Sbjct: 543 LDGSCSGLQILGAALRCEKTGEHVNLIPAGRVADIYRVVA 582
>gi|281306683|ref|YP_003345489.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
gi|271277988|emb|CBH51594.1| predicted phage RNA Polymerase [Pseudomonas phage phi-2]
Length = 814
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 190/420 (45%), Gaps = 47/420 (11%)
Query: 443 MLVPPKKWKGYNKGGY------LFLPSYVMRTHGSRKQQ---EALKSVTGNCMKKVFEAL 493
M+ PP +W GG+ L P ++R G + + E K+++ M FE +
Sbjct: 237 MISPPLRWDRIVGGGFHTEKRQLKFP--LIRVGGRIRHKHIREYRKAMSAETMPNFFEPI 294
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE----------DMTE 543
+ L S + +++ + +++IW GG + + + + P P +E DM
Sbjct: 295 NYLQSIPYSMSEDMYDTVKNIWQEGGGVLKVPKKAPPVKPVFPHAEGWNKEGASEADMEV 354
Query: 544 VQKWK-----W--SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+WK W +R+ K + E HS + M + + D RGR
Sbjct: 355 FNRWKRQTFNWHNDLREHKSMAWEMHS--------FNKVVGMARGKPVWNAMFADTRGRL 406
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y + SD + V+ FA +PLG G+ WLK+H+AN F G +K R A+ +
Sbjct: 407 Y-YRGACSPQGSDATKAVVHFARKKPLGHRGVYWLKVHIANCF--GFDKKKFKERAAWTD 463
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSC 716
H + +P N + + P +AA L+ A S +P + S + +H D +C
Sbjct: 464 QHWEHLLHGVTDPSNSDVYRANNDAPLMAVAAVRELAAAYASGNPETFESGIIVHMDATC 523
Query: 717 NGLQHYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
+GLQH +A+ R+ + VNLV G++ AD+Y+ +A ++RD+ H +L
Sbjct: 524 SGLQHLSAMLRDPVGGRYVNLVPGGDEKADIYARVAHLAMMQIERDAE---GGHACGMLW 580
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL-FAAAC-YAAKV 833
+ L V RKL K VMT VYG T + I L+E+G+ D + F C Y AK+
Sbjct: 581 QAL--GVSRKLAKGPVMTYVYGATLRSVADGIGDFLDEQGYSAKDTGVPFMKMCMYLAKL 638
>gi|84662626|ref|YP_453591.1| putative DNA-directed RNA polymerase [Xanthomonas phage OP1]
gi|84570675|dbj|BAE72738.1| putative DNA-directed RNA polymerase [Xanthomonas oryzae phage OP1]
Length = 774
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 186/386 (48%), Gaps = 52/386 (13%)
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQE 476
D + + ++R+A Y+P + P W Y GG+ L YV++ G E
Sbjct: 218 DDITAKTIERAAY-----YLPCVEQPMPWTSYANGGWHTAEMRRLMPYVIKGKG-----E 267
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEK 535
K++ + + +++L T WRVN ++L+ +E IAG + ++++ +P+
Sbjct: 268 YHKALQAADLSQELACINSLQGTAWRVNTRMLAAME-------KIAGKISIDEIVAVPD- 319
Query: 536 PLSEDMTEVQKW-KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
+ +W K RK K R+ Q + VA++ + Y+ + DFRG
Sbjct: 320 ------ADAPRWEKEEYRKTKN----RYKQVSN------VAKKFEAYPAIYFVYFCDFRG 363
Query: 595 RAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFSGGVEKLSHDGRLA 653
R Y M +N SD+ + +LEF+ G PL + + W I AN + G +K S R+
Sbjct: 364 RKYAMGSGINPQGSDLQKCLLEFSTGLPLTDANAVDWFLITGANRY--GYDKCSLQDRVQ 421
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQD 713
+ ++ EI +A++P+ G W A P Q LA C EA P +S L D
Sbjct: 422 WCHDNHGEILAAAQDPLTG-LLWKGASKPLQFLAWCFEY-EAFVEQGP-GFVSRLSADMD 478
Query: 714 GSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQAL 773
G+CNGLQH++A+ R+ + AA NL+ + P+D+Y+ +A R + +++ K L
Sbjct: 479 GTCNGLQHFSAMLRDDVGGAATNLLPADLPSDIYAIVAKRTQKRLEQ-----AEKDEDGL 533
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVT 799
+ K L ++R + K++ MT YG T
Sbjct: 534 IDKWLSHGINRSVTKRSTMTLPYGST 559
>gi|125999968|ref|YP_001039639.1| DNA-dependent RNA polymerase-like protein [Erwinia amylovora phage
Era103]
gi|431810449|ref|YP_007237531.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
gi|121621824|gb|ABM63398.1| DNA-dependent RNA polymerase-like protein [Enterobacteria phage
Era103]
gi|311875209|emb|CBX44468.1| DNA-directed RNA polymerase [Erwinia phage phiEa1H]
gi|311875330|emb|CBX45071.1| DNA-directed RNA polymerase [Erwinia phage phiEa100]
Length = 885
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 196/437 (44%), Gaps = 48/437 (10%)
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQE 476
GV + +E M Y P +VPP+ WK GG+ + R + + +
Sbjct: 227 GVADNVNAWIEAFKEHVSVMSPAYGPCVVPPRDWKTPFNGGF-HTEAVASRVRFVKGRTD 285
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI-----AGLVDRNDVL 531
++ +T M KV++A++ L S KW +N L + I + A ++ R++
Sbjct: 286 HVRKLTQKQMPKVYKAINFLQSVKWSINTDTLETAQEILAKNLGLGMPSFAPIITRDNKP 345
Query: 532 IPEKPLS----------EDMTEVQ-----KWKWSVRKAKKINQERHSQRCDTELKLSVAR 576
PL + +T Q WK K + +R S+ L+ A
Sbjct: 346 ACPLPLEFQHLRGEELRQSLTPTQWDSFLAWKGDCSKLYTMETKRTSKASAVARMLNQAS 405
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHL 635
+ E Y+ + +D RGR Y ++ S D+ + +L +G+ L S L W +
Sbjct: 406 DLAKFESIYFVYAMDSRGRVYVQSSGVSPQSDDLGKSLLRSTKGKTLDSSEALHWFLVLG 465
Query: 636 ANLFSGGVEKLSHDGRLAFV--ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
NL+ G +K D R++ V E+ + D A +P+ R WL+A++P+Q LA +
Sbjct: 466 GNLW--GWDKKPFDVRVSHVLDEDFADMVRDVATDPLT-FRNWLSADEPWQFLAWAKEYA 522
Query: 694 ---EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+A+ + +++LP+HQDGSC+G+QHY+A+ R+ A AVNL+ + P D+Y E+
Sbjct: 523 RYLDAVDDGTSAEFVTYLPVHQDGSCSGIQHYSAMLRDKTGAKAVNLMPSDTPQDIYGEV 582
Query: 751 AVRVHEIMKRDSNKDPSKHPQ-----------ALLAKILIDQVD-----RKLVKQTVMTS 794
A V I K + D + Q ++K + + D R L K+ VMT
Sbjct: 583 AKVV--IRKNKAIADMADSEQEGYSIGKMKLSVAVSKAMAESWDAIGITRSLTKKPVMTL 640
Query: 795 VYGVTFVGAREQIKRRL 811
YG T + RE I L
Sbjct: 641 PYGSTRITCRESIDDYL 657
>gi|429864712|gb|AGA17876.1| RNA polymerase [Synechococcus phage P60]
Length = 780
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 139/546 (25%), Positives = 234/546 (42%), Gaps = 83/546 (15%)
Query: 284 QAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVM 343
+ A IG AIE E+++ + ++ K+ R V + R + + + R
Sbjct: 112 EVAASIGSAIEVELKLQWYQQQDKDLFRN--------VTNGFHHSTGTRQKATVYNLRFN 163
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIET-AYVQHPVNPADYSPPDVRPAFRHRFK 402
+A + K WGR K+GS + + ET ++ K
Sbjct: 164 KA-----GIQWKGWGRTVHFKVGSWALRSITETTGWI---------------------IK 197
Query: 403 TILKHP-GQKTTKRYG---VVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
+K P QK R+ + D L+ L+ S PM+ PP W +GGY
Sbjct: 198 ETIKMPRSQKCILRFSREFIGLRDALMQRALELS-----FCLWPMVCPPNDWTDEGRGGY 252
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF--EALDTLGSTKWRVNKQVLSVLESIWV 516
L G+ + G+ + E L+ L +R+N +L+V +
Sbjct: 253 L-----TEEIRGTAPMIRKVGKPIGDSKQGTIPVEFLNNLQRQSYRINAAILAVANWCYD 307
Query: 517 SGGNIAGLV-----DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELK 571
+ + + +R D + P +E ++WK R N + +
Sbjct: 308 NSRTVGKFIHDQPRERLDSFNGD-PKAEP-ERFKEWKRMQRSIDDFNAQLFQRNWRATET 365
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
+ VA + D+E F+ P + D+RGR YP + LN +D + +L FAE G+ WL
Sbjct: 366 MFVANQY-DDEVFWIPWSFDYRGRVYPQNTQLNPQGTDFDKSLLLFAEE---GEVDEYWL 421
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
H+ + G +KLSH+ R+A+ + + I AE+PI W A +P+ LAACI
Sbjct: 422 AWHVCTTY--GNDKLSHNDRVAWTQENHELITIIAEDPIGAISLWEGAGEPWMFLAACIE 479
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSE 749
+ + + + S LPI D +C+GLQH +++ R+ + A VN++ G++ P+D Y
Sbjct: 480 YHACVITGAKQT--SGLPIGIDATCSGLQHLSSMTRDAVAAKQVNVIRGDQDGPSDGYKT 537
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+A + + +D S HP ++RK+ K+TVMT YGV+ AR I+
Sbjct: 538 VAEAAIKYI-----EDESIHP----------YMNRKITKRTVMTVPYGVSRDSARAYIRE 582
Query: 810 RLEEKG 815
L + G
Sbjct: 583 ALHDAG 588
>gi|451988638|gb|AGF91115.1| RNA polymerase [Synechococcus phage S-CBP2]
Length = 793
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 182/393 (46%), Gaps = 42/393 (10%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSY---VMRTH---GSRKQQEALKSVTGNCMKKVFEALDT 495
PML P W GGYL ++RT+ GS Q L + L+
Sbjct: 253 PMLCQPVDWSNDQIGGYLTAEGRFDRLVRTYSKVGSSLPQGDLP----------LQMLNN 302
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRK 553
L +R+N+QV V E + + + G R++ P +E +E ++ +K + R+
Sbjct: 303 LQHQAYRLNRQVFEVAEHCFANFITV-GQFRRDEHQDPPSRPAEGASEETIKAYKVARRE 361
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
+ +N + ++ T + VAR+ DE+ + P + D+RGR YP+ L +D +
Sbjct: 362 LEDVNAQLEAKNWRTTETMFVARKFIDEDRIWIPWSCDYRGRIYPITHCLTPQGTDFDKA 421
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
+ FA+ P+ + WL +A + G++K + D R+ +V + I A+NPI+
Sbjct: 422 MFYFADEGPINEY---WLAFQVATTY--GLDKATMDERVEWVRANTELISTIAQNPIDTI 476
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
W E+P+ LAAC + + + S LP D +C+GLQH +A+ + + AA
Sbjct: 477 SLWRDVEEPWCFLAACFEYFDCCIACT--RATSGLPCGIDATCSGLQHLSAMTGDAVAAA 534
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VN++ +KPAD Y +A + + P ++ Q L RK+ K+TVMT
Sbjct: 535 LVNVLPTDKPADGYKTVAEAAKQWL-------PEEYHQWLT---------RKVTKRTVMT 578
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
+ YGVT AR I L E G T L A
Sbjct: 579 TPYGVTRHSARGYIMGALAEAGCDTRQEGLLTA 611
>gi|148727210|ref|YP_001285702.1| p32 [Xanthomonas phage Xop411]
gi|116583510|gb|ABK00180.1| p32 [Xanthomonas phage Xop411]
Length = 746
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 192/406 (47%), Gaps = 60/406 (14%)
Query: 422 DPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF-----LPSYVMRTHGSRKQQE 476
D + + ++R+A Y+P + P W Y+ GG+ L Y+++ G +
Sbjct: 190 DDITTKTIERAAY-----YLPCVEQPMPWTSYSNGGWHTAEMRRLMPYLIKGKGDYHR-- 242
Query: 477 ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVL-IPEK 535
AL++ + + ++ L T WRVN ++L L+ IAG + ++++ +P+
Sbjct: 243 ALQAAD---LSQELACINALQRTAWRVNSRMLDALD-------QIAGKISIDEIVAVPD- 291
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
+ +W +++ + + R+ Q SVA + Y+ + DFRGR
Sbjct: 292 ------ADAPRW---LKEEHRKTRNRYKQVS------SVANKFLAYPAIYFVYFCDFRGR 336
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
Y M +N SD+ + +LEFA+G PL + + W I AN + G +K S R+ +
Sbjct: 337 KYAMGSGINPQGSDLQKCLLEFAKGMPLKDQHAVDWFMITGANRY--GFDKCSLADRVQW 394
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
++ EI AE+P+ G +W A P Q LA C+ + ++ + +S + DG
Sbjct: 395 CHDNHNEIIACAEDPLTG-LFWKGASKPLQFLAWCLEYRDFIEQGP--AFVSRVSADMDG 451
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
+CNGLQH++A+ R+ + AA NL+ + P+D+Y+ +A R +++ K L+
Sbjct: 452 TCNGLQHFSAMLRDEVGGAATNLLPADLPSDIYAIVAKRTQVRLEQ-----AEKDEDGLI 506
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
K L ++R + K++ MT YG T R G + DD
Sbjct: 507 DKWLSHGINRSVTKRSTMTLPYGST----------RFSSAGFVRDD 542
>gi|372217683|ref|YP_005087365.1| RNA polymerase [Cyanophage P-SSP2]
gi|310005846|gb|ADP00231.1| RNA polymerase [Cyanophage P-SSP2]
Length = 733
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 152/612 (24%), Positives = 260/612 (42%), Gaps = 121/612 (19%)
Query: 231 IEREQKMQRTKKQKA----AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAA 286
++++ +++ KK A A P++ L + AVI V + + + VV
Sbjct: 11 LKKQDRIETIKKHGAGSMVALMPYLLALDTESQAVIAAKLTFDKVFSPRKKNQL-VVSVT 69
Query: 287 VHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL---SKEKELLRKRVNSLIKSKRVM 343
IG AIE E ++ + E + A +E +K E RK + +++ ++
Sbjct: 70 DSIGSAIEAECQMQYYEELAP-----PLFAALKETYWHQAKGTEYKRKSMQTIMNKHDII 124
Query: 344 EAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
KPW R+ + KLG L+ L ++ F++
Sbjct: 125 PW---------KPWTREWKVKLGGFLLNCLARSS---------------------GWFES 154
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH---------MLIPYV-PMLVPPKKWKGY 453
+ K G K+ D V+ D KH + P PML+ P+ W
Sbjct: 155 VEKKIGNKS---------DAFVITT-DEFNKHKEEIVRITELFSPLTKPMLIEPRDWTTL 204
Query: 454 NKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV--- 510
+ GGY + + H ++ E L+ + G K ++ L+ + K+R++ ++ V
Sbjct: 205 DDGGYYL--NQLTNCHEMVRRGEQLR-IQG---KTTYQFLNQIQKVKYRLSDFIVGVAKE 258
Query: 511 LESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW----SVRKAKKINQERHSQRC 566
LE + G +++ IP KP D + K +W + K N+ R S C
Sbjct: 259 LEEKEIEVGKFRPVINHP---IPAKPADFDTNKESKKQWKREAGIAHNKNANEWRIS--C 313
Query: 567 DTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS 626
T + ++ R + ++ +Y P + D+RGRAYP+ L +D + +L F+E + +
Sbjct: 314 RTRMTMNCVREFEGKD-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLLRFSEESEITED 372
Query: 627 GLRWLKIHLANLFSGGVEKLSHDGRLAFV---ENHLYEIFDSAENPINGSRWWLTAEDPF 683
G++WL +A + G++K + + RLA+V EN L I A +P+N W A++P+
Sbjct: 373 GMKWLAFQVATTY--GLDKATMEERLAWVGKRENILL-IIRVATDPVNNIGDWEAADEPW 429
Query: 684 QCLAACINLSEALKSSSPHSVI------SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNL 737
Q LAAC HSV+ + LP+ D +C+GLQ A L R+ A VN+
Sbjct: 430 QFLAAC---------HEYHSVVMAGKETTGLPVATDATCSGLQILAGLARDKSTARLVNV 480
Query: 738 VAGEKPADVYSEIAVR-VHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
+ +KP D Y IA + + +I +R L DRK K+ VMT Y
Sbjct: 481 IPSDKPQDAYQVIADKSIKDIPER-----------------LRPYWDRKKTKRCVMTIPY 523
Query: 797 GVTFVGAREQIK 808
R+ I+
Sbjct: 524 NAKPFSNRQYIR 535
>gi|431809442|ref|YP_007236337.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
gi|398313522|emb|CCI88870.1| DNA-directed RNA polymerase [Yersinia phage phi80-18]
Length = 817
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 156/643 (24%), Positives = 275/643 (42%), Gaps = 84/643 (13%)
Query: 220 FLGWFGPLSEAIEREQKMQRTKKQKA-AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
+L W LSE I + K +A AY+P + L D VA+I ++ ++G A D
Sbjct: 48 YLLW---LSERISTDITTDLGKAGRAKAYSPLLHSLDPDAVALITINTLLGSFQA--RDG 102
Query: 279 CVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIK 338
+Q+ A IG + E+ + F + + + + +D ++ +S++ LR ++
Sbjct: 103 EIQLSTLAYSIGRNVYGELALAHFRDMKPDL-YETLTSDLQQKMSRD---LRHKLT---- 154
Query: 339 SKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+ Q N E W + ++G L+ L+ T+ H V + +
Sbjct: 155 ---IFRMQAKENNIELPEWTPSQKLQVGVYLLSLIDGTS--GHDVFLCNMN--------- 200
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
L+ G KT + E ++ L+ S + P + PP+ W G + G
Sbjct: 201 ------LRQSGNKTKYMISLSENIQHIMGDLEYSLINKSGFAAPCIYPPQDWTGEDGVGG 254
Query: 459 LF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
L +R Q + + G K L+ T W+VN +L+++ +
Sbjct: 255 FHGDLKIRAVRFFKGSSYQWEIMNTLGCDNTKTLAMLNAHQRTAWKVNPFILNLVTEMRK 314
Query: 517 SGGNIAGLVDRNDVLIPEKPL------SEDMT-----EVQKWKWSVR----KAKKINQER 561
G + P +P ++D T E +WK R K KK+
Sbjct: 315 RGRETKTVATLAAHKKPTRPDFLDLKDTKDFTHAEFKEFAQWKAETRDWHTKTKKVT--- 371
Query: 562 HSQRCDTELKLSV--ARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
R + L L+V A+ M + F++ + +D R RAYP+ LN SDV + +L A
Sbjct: 372 ---RVELRLHLAVEAAKEMLGYDEFFFVYQVDSRVRAYPVSGPLNPQGSDVQKALLHAAH 428
Query: 620 GRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI--NGSRWW 676
G P+ L W K+ +A+ F G++KL+ + +V+++ I + +P + WW
Sbjct: 429 GEPIDTPEALYWFKLTIASKF--GIDKLAPLECIKWVDDNHDNILKAVCDPCDRDAYLWW 486
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A+ P Q +A C S +K ++ S + DG+CNGLQ+Y+A+ R+ + A N
Sbjct: 487 SAADKPMQFIALCDEYSRFIKDTA--GFRSRIAAAMDGTCNGLQNYSAMLRDEVGGRATN 544
Query: 737 LV--AGEKPADVYSEIA----VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQT 790
L+ A P D+Y ++A R+ ++ D +H +R L K++
Sbjct: 545 LISDASGVPNDIYGDVAKASYKRLCSMVVSDERLAWQEH-----------GFNRSLTKKS 593
Query: 791 VMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
VMT VYG TF R+ + ++K + + F + YAA++
Sbjct: 594 VMTQVYGSTFGTCRKSVIEYCQDKDLFLKELR-FGYSDYAARL 635
>gi|116793061|gb|ABK26601.1| unknown [Picea sitchensis]
Length = 81
Score = 137 bits (346), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/78 (76%), Positives = 67/78 (85%)
Query: 578 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLAN 637
MKDEE FYYPHNLDFRG AYPMH +LNHL S+VCRG+LEF EGRPLGK+ L WLKIHLAN
Sbjct: 1 MKDEECFYYPHNLDFRGCAYPMHLYLNHLGSNVCRGLLEFVEGRPLGKTRLYWLKIHLAN 60
Query: 638 LFSGGVEKLSHDGRLAFV 655
L+ GGV+K S +GRL FV
Sbjct: 61 LYGGGVDKYSFEGRLTFV 78
>gi|418488977|ref|YP_007002889.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
gi|308071873|emb|CBW54794.1| putative DNA-dependent RNA polymerase [Pantoea phage LIMElight]
Length = 818
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 150/653 (22%), Positives = 277/653 (42%), Gaps = 66/653 (10%)
Query: 181 RQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRT 240
RQ++ E +A R +D ++ ++ A L + L F +S+ I++ K ++
Sbjct: 17 RQLEIENKARTRAIDRSRKAVKDALDSGRASELLPVSRLISAAFSTVSDEIDK-IKAEKA 75
Query: 241 KKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRI 299
Y ++L+ D +A M ++ + HE + QA + +G ++ E+
Sbjct: 76 PGVGGKYRKFLKLVSTDVLATGSMVYVLDSLC--HESQAKSSAQALMAGLGRFVQAEV-- 131
Query: 300 HSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGR 359
R IA + + + K S R + A E PW
Sbjct: 132 ---------LNRNLEIAAPAYINRVHEYMKEKHTRSQSHIMRTLRASADAVKLEHDPWSN 182
Query: 360 DTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
+G L++ + ET + H + PG + K
Sbjct: 183 TECIAVGRLLMQAVWETGLFKW---------------HSHSNQMNYLLPGDQLEK----- 222
Query: 420 ECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF----LPSYVMRTHGSRKQQ 475
++ + + S+ M+ P PM+VPP+ + GGY+ +Y R +++++
Sbjct: 223 ----VLTDVVTHSSMMMIAP--PMIVPPQDHTTIHDGGYMTDIDRRGTYKNRHITNKQRR 276
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--------- 526
+ K + + + A++ + +RVN+ VL +++ G I G+
Sbjct: 277 DVAKQFASDEAQPLRAAMNKAQNVPYRVNRSVLGWVQAARAQGIGI-GMPSTKGRPKPEW 335
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R D + E+ + ++ + ++WK R+ ++R SQ + + + KDE+ Y+
Sbjct: 336 RLDGIPKEQYDARELEDFEEWKAVTRQWYTEERKRVSQLRGMAMTIDMCEEYKDEQVLYF 395
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
P +D+R R Y LN SD+ + +LEF GRPLG GL WLK+++A F G +K
Sbjct: 396 PTCVDWRYRLY-FKSALNPQGSDLQKALLEFGTGRPLGDRGLHWLKVNVATTF--GYDKP 452
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
+ R A+V+ H EI A+ P + A+ P+ LAACI L A++S P +S
Sbjct: 453 LFEERAAWVDLHYAEIERVADAPFETDSF-KNADSPWCFLAACIELVNAVRSGCPAEYVS 511
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYSEIAVRVH-EIMKRDSN 763
H P+ D + +G QH++A+ R+ + NL + AD+Y + R +++ N
Sbjct: 512 HAPVAMDATNSGGQHFSAMLRDEIGGRLTNLFWNGNTEKADLYMNVKERTDSKVIVAQRN 571
Query: 764 KDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
D QA + +++ R + K+ MT Y T + I ++G+
Sbjct: 572 ADTVV--QATYWR--ENEITRSMTKRPAMTFFYSATVRSCSDYIMLGALDEGY 620
>gi|18640475|ref|NP_570316.1| RNA polymerase [Synechococcus phage P60]
Length = 574
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 178/383 (46%), Gaps = 39/383 (10%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVF--EALDTLGST 499
PM+ PP W +GGYL G+ + G+ + E L+ L
Sbjct: 35 PMVCPPNDWTDEGRGGYL-----TEEIRGTAPMIRKVGKPIGDSKQGTIPVEFLNNLQRQ 89
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLV-----DRNDVLIPEKPLSEDMTEVQKWKWSVRKA 554
+R+N +L+V + + + + +R D + P +E ++WK R
Sbjct: 90 SYRINAAILAVANWCYDNSRTVGKFIHDQPRERLDSFNGD-PKAEP-ERFKEWKRMQRSI 147
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
N + + + VA + D+E F+ P + D+RGR YP + LN +D + +
Sbjct: 148 DDFNAQLFQRNWRATETMFVANQY-DDEVFWIPWSFDYRGRVYPQNTQLNPQGTDFDKSL 206
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L FAE G+ WL H+ + G +KLSH+ R+A+ + + I AE+PI
Sbjct: 207 LLFAEE---GEVDEYWLAWHVCTTY--GNDKLSHNDRVAWTQENHELITIIAEDPIGAIS 261
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
W A +P+ LAACI + + + + S LPI D +C+GLQH +++ R+ + A
Sbjct: 262 LWEGAGEPWMFLAACIEYHACVITGAKQT--SGLPIGIDATCSGLQHLSSMTRDAVAAKQ 319
Query: 735 VNLVAGEK--PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VN++ G++ P+D Y +A + + +D S HP ++RK+ K+TVM
Sbjct: 320 VNVIRGDQDGPSDGYKTVAEAAIKYI-----EDESIHP----------YMNRKITKRTVM 364
Query: 793 TSVYGVTFVGAREQIKRRLEEKG 815
T YGV+ AR I+ L + G
Sbjct: 365 TVPYGVSRDSARAYIREALHDAG 387
>gi|294083965|ref|YP_003550722.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663537|gb|ADE38638.1| DNA-directed RNA polymerase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 871
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 182/398 (45%), Gaps = 32/398 (8%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPSYVMRTH-----GSRKQQEALKSVTGNCMKKVFEALD 494
+ PM+VPP W N G + +R ++++ +K++ MK+ +A++
Sbjct: 247 FRPMVVPPINWGTANHVGPYYDTETAIRAPLVKNVNPNQRKKIVKALKTGSMKECLDAVN 306
Query: 495 TLGSTKWRVNKQVLSVLESIWVSGG----NIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
TL + +N+ L+ ++ WV I V +I E ++V+++ +
Sbjct: 307 TLQQVPYTINRYTLAAIK--WVVESKLDVEIEEFVPVTPPIIDENDKDGTPSQVKRYYRA 364
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
RK N + + T+L + + KD+ F+ PHN DFRGR Y + P H D
Sbjct: 365 QRKKSIANA--NLVQFQTDLNEAESLCDKDDRRFWLPHNFDFRGRVYHI-PAFGHHRQDH 421
Query: 611 CRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGV--------EKLSHDGRLAFVENHLYEI 662
RG+ FA+ +P+ K L+ L +A + V +K++ D R +VE++ I
Sbjct: 422 IRGLFMFADKKPITKDNLKHLYFQIATTWGNQVSETDERKTDKITLDERYKWVEDNYEAI 481
Query: 663 FDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHY 722
+ ++ + G W A+ P Q LAAC L L + LPI DGS +GLQHY
Sbjct: 482 LLAGKDYVAGFEHWSKADAPIQHLAACRELY--LADQHGEGYLCGLPIGFDGSNSGLQHY 539
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ- 781
+ L + +A VNLV P D YS IA + +R + + + + + ++D
Sbjct: 540 SMLMKWKEDAFKVNLVPNHPPQDCYSFIAEADMNLAQRIVDGECDELNENEITNAIMDDC 599
Query: 782 -------VDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
+ RK K+ +MT Y VT +G +Q + +E
Sbjct: 600 HNWLKHGITRKQTKKNIMTWPYSVTLIGMADQNRDDME 637
>gi|224105535|ref|XP_002333804.1| predicted protein [Populus trichocarpa]
gi|222838549|gb|EEE76914.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 125/217 (57%), Gaps = 53/217 (24%)
Query: 324 KEKELLRKRVNSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
+E+E LRK+V LIK +++ +K++K +++KP D +AK+GSRL+ELL++TAY+Q P
Sbjct: 2 EEQENLRKKVTDLIKKQKLPAVRKIVKWKDDSKPCNADARAKVGSRLIELLLQTAYIQPP 61
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
+ SP + RPAF H F+ + + +K K+Y V++CDPLVL+GL+++
Sbjct: 62 CDQLADSPSEPRPAFVHTFRNV-SYVNKKGVKKYVVIQCDPLVLKGLEKT---------- 110
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
+F+ + V ALDTLG+T+WR
Sbjct: 111 ----------------VFIENMV-------------------------NALDTLGNTRWR 129
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
VNK+VLSV++ IW +GG +A LVD +DV +PE+P +E
Sbjct: 130 VNKRVLSVVDRIWSNGGCLADLVDHSDVPLPERPETE 166
>gi|229604949|ref|YP_002875649.1| putative RNA polymerase [Vibrio phage VP93]
gi|227976994|gb|ACP44096.1| putative RNA polymerase [Vibrio phage VP93]
Length = 816
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 165/701 (23%), Positives = 285/701 (40%), Gaps = 112/701 (15%)
Query: 175 FNLLRRRQVKQETEAWERMVDEYKELEA---------KMIEKRLAPNLPHIKGLFLGWFG 225
++ + R+ +E A + ++E + EA +E A L ++ L +
Sbjct: 1 MSVTKNRETFEEKAARQERIEETFKTEAIERSRKAVLDALENGRATELTPVQRLLNAAYD 60
Query: 226 PLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+S I+ E K +T+ A Y +I L+ +D + V+ ++ ++ + A
Sbjct: 61 GVSARID-ELKASKTRGVGAKYRGYIRLVSSDVLTVMTLNTLLNNI-------------A 106
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEA 345
+ +GM+ I S + +IIA EV++ RV +K +
Sbjct: 107 STELGMS-----SIQSLGTSLGRSVQSEIIAQNAEVVAPA---YMNRVYEYLKEHKTRSQ 158
Query: 346 QKLLKNE---------ETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPA 396
+L+ ET PW T +G L++ + +T + P +
Sbjct: 159 SHILRTFRAASANVKLETDPWDNTTCFNVGRLLLQCVHDTGIFEWVQGPKGLLYAEPAEE 218
Query: 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKG 456
+ F +L+H ++ Y PM+VPP + + G
Sbjct: 219 LQGVFSDVLEHAD--------------------------TMVHYPPMIVPPVRHEDIYNG 252
Query: 457 GYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV 516
GYL T SR+ + + + + +++V EA + +NK E +V
Sbjct: 253 GYL--------TDLSRRHTYSNRHIKRSRLREVNEAFKQANGIRQALNK----AQEVPYV 300
Query: 517 SGGNIAGLVDRN-----DVLIP---EKP-------------LSEDMTEV-QKWKWSVRKA 554
+I LV + DV IP +KP SED E + WK +R+
Sbjct: 301 VNQSIYDLVLQAKATGFDVGIPSHHQKPQPKFHLHGTDKADWSEDDQEAFEVWKTQMRQW 360
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
++R SQ + L + RR DE+ Y+P +D+R R Y HLN SD+ + +
Sbjct: 361 YTKERKRVSQIRQLAITLDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKAL 419
Query: 615 LEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR 674
L +PLGK GL WLK H+A F G +K + R + E + I + ++P+N
Sbjct: 420 LLLGRKKPLGKRGLFWLKSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED 477
Query: 675 WWLTAEDPFQC-LAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
+ D F C LAA I L EAL S P S++ + D + +G QH++A+ R+ +
Sbjct: 478 F--KDADEFWCMLAASIQLIEALDSPDPEKYESNIAVALDATNSGGQHFSAMLRDPIGGK 535
Query: 734 AVNLV--AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
NL AD+Y ++ R +K + +DP QA ++ + R + K+
Sbjct: 536 LTNLFWDGNLTKADLYMDVKQRTDSKIKV-ALRDPETIVQAHYWT--LNPITRSMTKRPT 592
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGH-ITDDRQLFAAACYAA 831
MT Y T + I ++G+ TD+ LF + +
Sbjct: 593 MTYFYSATLRSCTDYIFLGAADEGYEGTDEYTLFKLCSFVS 633
>gi|61806414|ref|YP_214191.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
gi|61374339|gb|AAX44193.1| T7-like RNA polymerase [Prochlorococcus phage P-SSP7]
Length = 778
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 177/377 (46%), Gaps = 34/377 (9%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PML+ P+ W + GGY + + + H ++ + L+ + G + ++ L+ + K+
Sbjct: 240 PMLIEPRDWSPMHDGGYYL--NDLTKCHEMVRRGKPLR-IQG---ETTYQFLNEIQKVKY 293
Query: 502 RVNKQVLSVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
R+N ++ V E + G +++ D P+ P ED ++W+ A+ N
Sbjct: 294 RLNPFIVMVAEELEEREIEVGKFRPVINHPDP--PKPPNMEDEESRKQWRKDKAIARNKN 351
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
C T + ++ R KD+E +Y P + D+RGRAYP+ L +D + ++ FA
Sbjct: 352 ANEWRISCRTRMTMNCVREFKDKE-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLIRFA 410
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE--NHLYEIFDSAENPINGSRWW 676
E P+ + G++WL +A + G++K + + RL +V ++ I A +PIN W
Sbjct: 411 EEAPITEDGMKWLAFQVATTY--GLDKATMEERLDWVNEPENIKLIKRVATDPINNIGDW 468
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A++PF+ LA C + + + LP+ D +C+GLQ A L R+ A+ VN
Sbjct: 469 EAADEPFEFLAGCEEYYSVVLIKT--RTTTGLPVATDATCSGLQILAGLARDKSTASLVN 526
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
++ +KP D Y IA + E + P+ L DRK K+ VMT Y
Sbjct: 527 VIPSDKPQDAYKVIAEKSLEHI-----------PERLRP-----YWDRKKTKRCVMTIPY 570
Query: 797 GVTFVGAREQIKRRLEE 813
R+ I+ E+
Sbjct: 571 NAKPFSNRQYIRDAFED 587
>gi|265525452|gb|ACY76218.1| predicted protein [Prochlorococcus phage P-SSP7]
Length = 727
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 177/377 (46%), Gaps = 34/377 (9%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKW 501
PML+ P+ W + GGY + + + H ++ + L+ + G + ++ L+ + K+
Sbjct: 189 PMLIEPRDWSPMHDGGYYL--NDLTKCHEMVRRGKPLR-IQG---ETTYQFLNEIQKVKY 242
Query: 502 RVNKQVLSVLESIWVSG---GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
R+N ++ V E + G +++ D P+ P ED ++W+ A+ N
Sbjct: 243 RLNPFIVMVAEELEEREIEVGKFRPVINHPDP--PKPPNMEDEESRKQWRKDKAIARNKN 300
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
C T + ++ R KD+E +Y P + D+RGRAYP+ L +D + ++ FA
Sbjct: 301 ANEWRISCRTRMTMNCVREFKDKE-YYIPWSFDYRGRAYPIPSFLTPQDTDFGKSLIRFA 359
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE--NHLYEIFDSAENPINGSRWW 676
E P+ + G++WL +A + G++K + + RL +V ++ I A +PIN W
Sbjct: 360 EEAPITEDGMKWLAFQVATTY--GLDKATMEERLDWVNEPENIKLIKRVATDPINNIGDW 417
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
A++PF+ LA C + + + LP+ D +C+GLQ A L R+ A+ VN
Sbjct: 418 EAADEPFEFLAGCEEYYSVVLIKT--RTTTGLPVATDATCSGLQILAGLARDKSTASLVN 475
Query: 737 LVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVY 796
++ +KP D Y IA + E + P+ L DRK K+ VMT Y
Sbjct: 476 VIPSDKPQDAYKVIAEKSLEHI-----------PERLRP-----YWDRKKTKRCVMTIPY 519
Query: 797 GVTFVGAREQIKRRLEE 813
R+ I+ E+
Sbjct: 520 NAKPFSNRQYIRDAFED 536
>gi|451989257|gb|AGF91727.1| RNA polymerase [Synechococcus phage S-CBP4]
Length = 792
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 207/474 (43%), Gaps = 59/474 (12%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
WGR+ + ++G +++ +I+T+ + +VR R+R I+ P
Sbjct: 175 WGREARVRIGVWMLDCIIDTS---------GWFTREVRNEGRNRISYIVPTP-------- 217
Query: 417 GVVECDPLVLEGLDRSAKHMLIPYV-PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
+ L ++ + P PML+ P W GGYL + VMR H
Sbjct: 218 -----EFLRIKDKVMDDAELFAPLAWPMLIEPNNWTNDRAGGYLL--NEVMRGH------ 264
Query: 476 EALKSVTGNCMK--KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
++ C++ + L+ + + +N ++ V E + G + + + P
Sbjct: 265 HMVRRGNHGCIQGETPIDFLNKIQKVAFTLNPFIVEVAEDLARLGRPVGKFLPVVNHAEP 324
Query: 534 EKP--LSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLD 591
KP ++E+ +++K ++++ K + + + C T + + R KD F+ P + D
Sbjct: 325 PKPFDIAENEESRKQYKRAMKQVKDLQYQESKKSCRTRMTMEAVNRFKDVPKFFIPWSFD 384
Query: 592 FRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGR 651
+RGRAYP+ L +D + +L FA+G + WL +A F G++K R
Sbjct: 385 YRGRAYPIPAFLTPQDTDFGKSLLIFADGSYMTPEAEDWLAFQVATTF--GLDKAPMTER 442
Query: 652 LAFVENHLYEIFD-SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPI 710
L + N+ +E+F A +P+ W E+P+Q LAA + ++ + L +
Sbjct: 443 LEWARNN-HELFTLIATDPVRNLPLWEGVEEPWQFLAAAEEYYHCVVAADRQ--FTRLMV 499
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH- 769
D +C+GLQ A L R+ A VN++ G+KP D Y +A ++ + H
Sbjct: 500 ATDATCSGLQILAGLARDKSTARLVNVLPGDKPQDAYKVVA------------EEAAPHC 547
Query: 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
P+++ + DRK VK+ VMT Y R I+ L EKG D L
Sbjct: 548 PESIQPYM-----DRKTVKRVVMTVPYNAKPFSNRGYIRDALAEKGVEIDKDDL 596
>gi|422937609|ref|YP_007007815.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
gi|374713597|gb|AEZ65066.1| putative DNA-dependent RNA polymerase [Aeromonas phage phiAS7]
Length = 816
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 146/590 (24%), Positives = 254/590 (43%), Gaps = 79/590 (13%)
Query: 246 AYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEK 305
AY+P + L D V+++ + ++ V + E + + A IG + E+ + SF
Sbjct: 72 AYSPLLHALDPDAVSLLAITTLVESVCSRKEGY-IHLGFLASEIGRRVYGELALASF--- 127
Query: 306 TKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKL 365
++ + A T+++ SK + LR ++ M+AQK E W +A++
Sbjct: 128 -RDINPELYEALTKDLQSKMSQDLRHKLTVF-----RMQAQK--AGIELPEWTPSQKAQV 179
Query: 366 GSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLV 425
GS LV L+ + + P + T+ G K+ VV V
Sbjct: 180 GSYLVSLMEKQS---------------GDPKYLCELDTVAT--GHKSAY---VVYLSKHV 219
Query: 426 LEGLDRSAKHMLIPY---VPMLVPPKKWK--GYNKGGYLFLPSYVMRTH-GSRKQQEALK 479
E + M++ P L+PP+ W G G Y L +R GS +Q E ++
Sbjct: 220 HELMAEIEDRMMLKAGFAAPCLIPPQPWDADGTQGGFYGDLKVRAVRFFKGSSEQWEIMR 279
Query: 480 SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE 539
S G+ V L+ + + W+VN +L +++ + G + + PE+PL
Sbjct: 280 S-EGHDPAIVLGMLNAVQNVAWKVNPFILDLIKQMRAKGLETKTVRTTAALPKPERPLFL 338
Query: 540 DMTE-----------------VQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEE 582
D+ + ++ W VRK +I E M +
Sbjct: 339 DLQDGALTPEQEEEKKRWKRKMRDWHTEVRKVSRIEARLAVAIAAAE-------EMLKHD 391
Query: 583 GFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSG 641
FY+ H + R R YP+ L+ +D + +L A+G P+ L W K+++A F
Sbjct: 392 RFYFTHQVCDRFRMYPVSGPLSPQGADNQKALLHSADGGPIDSDEALYWFKLNIAAKF-- 449
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPI--NGSRWWLTAEDPFQCLAACINLSEALKSS 699
G++KLS + + +V+++ I +A +P + WW A+ P Q +A C
Sbjct: 450 GIDKLSPEDCVKWVDDNETNIIRAASDPAGRDAFHWWSQADKPLQFIAVCDEYRR--YKL 507
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVHEI 757
P ++ + DG+CNGLQ+Y+AL R+ + A NL++ E PAD+Y ++A R +
Sbjct: 508 DPSGFVARIACAMDGTCNGLQNYSALLRDEVGGRATNLISAEDRVPADIYGDVA-RASWV 566
Query: 758 MKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+S + P + + +RKL K +VMT VYG T+ R+ I
Sbjct: 567 RLLESVECPFR------TAWMAHGFNRKLTKPSVMTQVYGSTYGTCRKSI 610
>gi|291335377|gb|ADD94991.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S04-C24]
Length = 662
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 143/597 (23%), Positives = 253/597 (42%), Gaps = 72/597 (12%)
Query: 233 REQKMQRTKKQKAAYAPHIELLPADKVAV-IVMHKMMGLVMAGHEDRCVQVVQAAVHIGM 291
+E K K+ Y +E L A +AV I K+ ++++ Q + IG+
Sbjct: 67 KEGKTGTAFKEIQQYLADVEPLAAAAIAVKITFDKVFS-----YKEKNNQATKVCESIGL 121
Query: 292 AIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKN 351
A+EQE ++ + + +L K+ R S+ ++++ + L+
Sbjct: 122 AVEQECQMRHYEKHAPG------------LLKTLKDNYWHR--SIGTQQKLVVIRTLMNR 167
Query: 352 EETK---PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
+ K WG + KLG L++ +++++ + D++ R R + ++ P
Sbjct: 168 YDVKQWTTWGSSNRIKLGGWLLDCIMQSS---------GWFTKDMQQQGRKRVQYVIPTP 218
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468
+E V+ R A+ PML+ P W+ GGY+ + VMR
Sbjct: 219 E--------FLEIKDQVM----RDAELFSPLAWPMLIEPNDWEHDRCGGYIL--NEVMRG 264
Query: 469 HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN 528
H ++ + S+ G+ K E L+ + +R+N ++ V E + + +
Sbjct: 265 HDMVRRGDP-TSIQGD---KPLEFLNKIQKVAYRLNPFIVGVAEELDRLERAVGKFLPII 320
Query: 529 DVLIPEKPLS-EDMTEVQK-WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
+P KP+ E+ E +K ++ + + + + + C T + + R KD + FY
Sbjct: 321 HHELPPKPVDIEENDESRKSYRRNCAEVHNLQAQEFRKSCRTRMTMEAVARFKDRDKFYI 380
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
P + D+RGRAYP+ L +D + +L FA+ + WL +A + G++K
Sbjct: 381 PWSFDYRGRAYPIPAFLTPQDTDFGKSLLMFAKASFMTPKAEDWLAFQVATTY--GLDKA 438
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
RL +V+N+ + I A +PI W A++P+Q LAAC + +
Sbjct: 439 PMRERLDWVKNNTHLISCVASDPILHIHEWEAADEPWQFLAACEEYYHCVLKCDRQE--T 496
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
I D +C+GLQ A L R+ A VN++ ++P D Y +A +
Sbjct: 497 RAMIATDATCSGLQILAGLARDRNTAQLVNVLPSDRPQDAYKVVA------------EQA 544
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQL 823
S H K + +DRK VK+ VMT Y R IK L+EKG D L
Sbjct: 545 SPH----CPKSIRPYMDRKTVKRVVMTVPYNAKPFSNRGYIKDALKEKGVEIDKDDL 597
>gi|291334905|gb|ADD94542.1| DNA directed RNA polymerase [uncultured phage MedDCM-OCT-S08-C159]
Length = 584
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 180/400 (45%), Gaps = 43/400 (10%)
Query: 431 RSAKHMLIPYVPMLVP----PKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCM 486
R + I P+L P P+ W N GGY + R Q A+K+ + +
Sbjct: 3 RKGRSNRIAAYPLLQPCFDKPRPWTSINDGGY----------YTKRLQTRAIKTTDRDSI 52
Query: 487 KKVFE--------ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLS 538
K++ E AL T W VNK VL +L W + L+DR +P KPL
Sbjct: 53 KRLQEENLSTSLKALTLASQTAWTVNKFVLEILVYCWEERIEVGSLIDRELAELPTKPLD 112
Query: 539 EDMT--EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
D ++W++ +N S+R + A++ DE+ F++ + D+ GR
Sbjct: 113 IDTNPDSRKEWRYLASLIHDMNAHNKSKRYQILSMIDTAQKYSDEK-FFHVYQFDWTGRM 171
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
YP+ H + +D+ RG+ F +G + K L WL I AN + G+ K S++ RL +
Sbjct: 172 YPVTAHFHPQGNDIARGLHIFHKGAAINNKKQLNWLAIAGANHW--GLNKESYEERLEWA 229
Query: 656 ----ENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
+ +I+D +PI W A++P+Q L C +E + + +SH
Sbjct: 230 YIAGTDLALQIYD---DPIAHVDIWGKAKEPWQFLGWCKEWAEYQRDGWGY--VSHHVCC 284
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
DG+ NG QH A L N A VNL KP D+Y++I E++ ++ KD P+
Sbjct: 285 LDGTNNGYQHIAGLTGNQHLANKVNLQNVNKPQDLYAQIL----EVLLQELEKDDK--PE 338
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
A + D++ RK +K+ V+ Y T G I++
Sbjct: 339 AKEWLEIKDKLTRKFIKKPVLMVPYNSTTFGIANYIEKYF 378
>gi|291335757|gb|ADD95360.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S05-C243]
Length = 769
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 182/398 (45%), Gaps = 43/398 (10%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGS-RKQQEALKSVTGNCMKKVFEALDTLGSTK 500
PML+PP+ W GGY + + R H R+ A + G + ++ +
Sbjct: 241 PMLIPPRNWHSLQDGGYYL--NDLTRCHDFIRRSNHA--PIQGEI---PYLFINKIQQVS 293
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQE 560
+++N ++ V + + G ++ + +P KP E + W+ R+A ++
Sbjct: 294 YKLNPFIVEVAKELEERGISVGKFRPVIEYEMPPKPPEEASKDT--WREWRRQAAIVHTA 351
Query: 561 RHSQR---CDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEF 617
R ++ C T + + V R +D+ +Y P + D+RGR YP+ L +D + ++ F
Sbjct: 352 RKNETRKACRTRMTMDVVREFEDKV-YYIPWSFDYRGRVYPIPNLLTPQDTDFGKSLIIF 410
Query: 618 AEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE----NPINGS 673
EG + K G+ W+K L+ S G+ K + + R+A++++ YE E +P+
Sbjct: 411 NEGTKITKKGMEWIKFQLST--SYGLSKATMEERIAWIDD--YENRALVERVWRDPVGNV 466
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAA 733
W A+DP+ LAAC +E + H +HLP+ D +C+GLQ A L ++ A
Sbjct: 467 ADWEHADDPWLFLAAC---NEWYELHYEHRFHTHLPVAVDATCSGLQILAGLAKDASTAR 523
Query: 734 AVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
VN++ +KP D Y+ IA R E + P+ L DRK K+ VMT
Sbjct: 524 MVNVLGSDKPQDAYATIASRSMEAI-----------PERLRP-----YWDRKATKRCVMT 567
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
Y R I+ ++K D +L +C +A
Sbjct: 568 IPYNAKPFSNRSYIREAFKDKDVDVDKEEL--TSCVSA 603
>gi|239907675|ref|YP_002954416.1| RNA-polymerase [Desulfovibrio magneticus RS-1]
gi|239797541|dbj|BAH76530.1| putative RNA-polymerase [Desulfovibrio magneticus RS-1]
Length = 619
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 168/368 (45%), Gaps = 60/368 (16%)
Query: 442 PMLVPPKKWK-GYNKGGYLFLP--SYVMRTHGSRKQQEALKSVTGNCMKKVF-EALDTLG 497
PM P +WK + GGYL S+ S+++ + N K F +AL+ L
Sbjct: 56 PMFCSPDEWKKDLSGGGYLIKEDHSFAFNVKSSKQRICIISEYKKNSFDKTFLKALNLLQ 115
Query: 498 STKWRVNKQVLSVLESIWVS---GGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKA 554
T + +NK++L+ ++ S G N+ K L +D T
Sbjct: 116 QTPYNINKKILNTMKHFHGSTSYGNNLT------------KKLLQDQT------------ 151
Query: 555 KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGV 614
LS+A + D FY P LDFRGR Y ++ S D R +
Sbjct: 152 -----------------LSLADDLADRT-FYIPWYLDFRGRMYSSVLQISPQSHDEGRSL 193
Query: 615 LEFAEGRPLGK----SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
L F+E + + K + L L + + + K+S + ++++E++ +IF SA++PI
Sbjct: 194 LVFSEKKHIDKHNECASLENLAVFGYSKYGSPTGKVSKEKMISWIESNERDIFKSAQDPI 253
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A D + LA C + ++ S +++P++ DG+CNG QHYAAL R+ +
Sbjct: 254 LNFEFWQKASDRYSFLAFCFEW-KNIQQSKAGERYTNIPVYVDGTCNGFQHYAALLRDHI 312
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQT 790
A VNLV GE P D Y + ++H S+ + + K + + VDR +K++
Sbjct: 313 SAPFVNLVDGEIPGDFYQNVVDKLH------SSAGTTDFSDDITRKFVAEFVDRSFIKKS 366
Query: 791 VMTSVYGV 798
++++ YG
Sbjct: 367 IISAGYGA 374
>gi|422936620|ref|YP_007006595.1| RNA polymerase [Escherichia phage phiKT]
gi|374713664|gb|AEZ65095.1| RNA polymerase [Escherichia phage phiKT]
Length = 823
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/391 (28%), Positives = 180/391 (46%), Gaps = 53/391 (13%)
Query: 441 VPMLVPPKKWKGYNKGGY--LFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLG 497
+P + P W G GGY + S + R S Q + L + V ++TL
Sbjct: 229 LPFVEKPLDWTGIVGGGYHTARMQSTMPRCIKASPTQMDVLIKHRDDYKGTVVACINTLQ 288
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRN--DVLIPEKPLSEDMTEVQK-----WK-- 548
S +WR+NK++L V + + G +N D L ED TE K WK
Sbjct: 289 SVEWRINKRILEVQQQM------FRGFEPKNKPDALECHSKDVEDWTEADKSLHSHWKKE 342
Query: 549 ----WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLN 604
++ ++A++ RH+ LSVAR D ++ + D+RGR YP ++
Sbjct: 343 MARWYTEQRAERYAASRHA------YTLSVAREFADYPRIWFMYFADWRGRYYPATTGIS 396
Query: 605 HLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
+D+ + +LEFA G+P+ L + G +K S R+ +V + I
Sbjct: 397 PQGTDISKSMLEFANGKPISDPIAEQFFFLLGST-KFGFDKGSISERVQWVHENHELIMA 455
Query: 665 SAENPINGSRWWLTAEDP---FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQH 721
A+ P+ + +W D +Q LA C +E + P +S LP+ DG+CNGLQH
Sbjct: 456 CADEPLLHTDFWYREADKKTRYQFLAWCFEYAEYKRF--PAGFVSRLPVSLDGTCNGLQH 513
Query: 722 YAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK---IL 778
Y+A+ R+++ A A NL+ +P D+Y+++A V +++ S P+ P AL + +
Sbjct: 514 YSAMLRDSVGAKATNLLPANRPNDIYAQVAGVVTNLLESMS---PADFP-ALTRESKPLS 569
Query: 779 IDQVD------------RKLVKQTVMTSVYG 797
I +VD R LVK+ VMT YG
Sbjct: 570 IYEVDFFRRGWLHHGISRSLVKRCVMTLPYG 600
>gi|374531627|ref|YP_005098186.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
gi|372001329|gb|AEX65868.1| T3/T7-like RNA polymerase [Pseudomonas phage Bf7]
Length = 803
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 192/399 (48%), Gaps = 45/399 (11%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+P + PPK W GG+ + + RT + +A +V + +V +AL+ + S
Sbjct: 225 LPCVEPPKPWVTPTDGGWHTMA--MRRTLPCMVRGQATATVE-DVGPRVLKALNKVQSVA 281
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLI-------PEKPLSE---------DMTEV 544
W VN+++L V E D DVL+ P+KPL DM E
Sbjct: 282 WEVNERILEVAEFA-------REHFDVQDVLVSDKRGGMPDKPLFMQADPVLKIVDMNEF 334
Query: 545 Q-----KWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPM 599
+ +W+ R+ + R + T + VA + K + ++ +++D+R R Y
Sbjct: 335 ELAQFTEWRQEAREWHTQQKVRGAHAGSTNEAIRVANKYKGKP-LWFVYSVDYRSRFYAS 393
Query: 600 HPHLNHLSSDVCRGVLEFAEGRPLGKS-GLRWLKIHLANLFS-GGVEKLSHDGRLAFVEN 657
L+ +D+ + ++ FA P+ S GL W ++ AN ++ ++K D R +V +
Sbjct: 394 GQGLSPQGNDLSKALIHFARSAPIRTSAGLFWFRVAGANKWAVNKLDKQPLDVRAQWVID 453
Query: 658 HLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCN 717
+ I A++PI+ R W A+ PFQ LA C + +++ P S + +P+ QDGSCN
Sbjct: 454 NADFICRIADDPIS-HREWTDADVPFQFLAWCFEYAAWVRN--PESFRTRIPLGQDGSCN 510
Query: 718 GLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNK-DPSKHPQALLAK 776
GLQH++A+ R+ + A NL+ D+Y +A I++ D ++ D +K ++
Sbjct: 511 GLQHFSAMLRDRVGGRATNLIPDRVQHDIYGLVATATAGIVQSDIDECDIAKRWKS---- 566
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
++ R LVK++VMT YG T R+ I + +KG
Sbjct: 567 ---HELSRSLVKRSVMTLPYGSTRHSCRDFIMKEYMDKG 602
>gi|357516855|ref|XP_003628716.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355522738|gb|AET03192.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 259
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQK 236
+LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL AI +Q+
Sbjct: 138 MLRRRQIKIETEAWEEAAREYQELLEDMREQKLAPNLPYMKSLFLGWFEPLKNAIAADQE 197
Query: 237 MQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVHIGMAIEQ 295
+ + K + ++AP+ LP D +AVI MHK+MGL+M +V+QAA IG AIE
Sbjct: 198 ICKDTKTRLSHAPYFNELPPDMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEH 257
Query: 296 EI 297
E+
Sbjct: 258 EV 259
>gi|464683|sp|P33540.1|RPOP_NEUCS RecName: Full=Probable DNA-directed RNA polymerase
Length = 896
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 192/386 (49%), Gaps = 38/386 (9%)
Query: 441 VPMLVPPKKWKGYNK------GGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEAL 493
+PM++PP +WK + GG + + +R ++ + + +T N K++ +A+
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYN--KELVDAV 341
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ + +N ++L +++ D+ D +I K + D + ++ RK
Sbjct: 342 NFKSKIPYTINLKILD-----FITRDEFINR-DKKDNVIIYKHIHPDSALLGEYMKD-RK 394
Query: 554 AKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
KI++ +S+ +S+A+ MKD + FY +D+RGR Y LN ++
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +L F EG+ L GL+ LKI+ AN F G++K S + RL +VE +L++I D I+
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W A++P LA + L + P + ISHLPI D +CNGLQH +A+ + +
Sbjct: 508 NYEIWREADEPLLFLACALELKGY--NEDP-NFISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 732 AAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL+ + P D+YSE+ + K++ + + L +I V+R LVK
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHI----KQEILEASKSYEHTNLERI---NVERCLVK 617
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEK 814
+ +MT YG T G +QI + +K
Sbjct: 618 RGLMTITYGATERGIYDQIVSKFFQK 643
>gi|1449393|emb|CAA39045.1| putative RNA polymerase (mitochondrion) [Neurospora crassa]
Length = 896
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 192/386 (49%), Gaps = 38/386 (9%)
Query: 441 VPMLVPPKKWKGYNK------GGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEAL 493
+PM++PP +WK + GG + + +R ++ + + +T N K++ +A+
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYN--KELVDAV 341
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ + +N ++L +++ D+ D +I K + D + ++ RK
Sbjct: 342 NFKSKIPYTINLKLLD-----FITRDEFINR-DKKDNVIIYKHIHPDSALLGEYMKD-RK 394
Query: 554 AKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
KI++ +S+ +S+A+ MKD + FY +D+RGR Y LN ++
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +L F EG+ L GL+ LKI+ AN F G++K S + RL +VE +L++I D I+
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W A++P LA + L + P + ISHLPI D +CNGLQH +A+ + +
Sbjct: 508 NYEIWREADEPLLFLACALELKGY--NEDP-NFISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 732 AAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL+ + P D+YSE+ + K++ + + L +I V+R LVK
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHI----KQEILEASKSYEHTNLERI---NVERCLVK 617
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEK 814
+ +MT YG T G +QI + +K
Sbjct: 618 RGLMTITYGATERGIYDQIVSKFFQK 643
>gi|437706625|ref|ZP_20825381.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435291618|gb|ELO68431.1| DNA-directed RNA polymerase, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
Length = 337
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 162/321 (50%), Gaps = 38/321 (11%)
Query: 440 YVPMLVPPKKWKGYNKGGYLF--LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
Y P +VPP+ WK GG+ + S + G+R E ++ +T M KV++A++ L
Sbjct: 19 YAPCVVPPRPWKTPFNGGFHTEKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQ 75
Query: 498 STKWRVNKQVLSVLESI-----WVSGGNIAGLVDRNDVLIPEKPLS-----------EDM 541
+T+W++NK VL+V+E + + L+D+ + P P+ ++M
Sbjct: 76 NTQWQINKDVLAVIEEVVRLDLGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEM 133
Query: 542 TEVQKWK----WSVRKAKKINQE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
++W+ W A+ E R S+ + AR+ E Y+ + +D R R
Sbjct: 134 LSPEQWQQFINWKGECARLYTAETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSR 193
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDGRLAF 654
Y L+ S+D+ + +L F EGRP+ L+W I+ ANL+ G +K + D R++
Sbjct: 194 VYAQSSTLSPQSNDLGKALLRFTEGRPVDSVEVLKWFCINGANLW--GWDKKTFDVRVSN 251
Query: 655 VENHLYEIF--DSAENPINGSRWWLTAEDPFQCLAACINLSEAL---KSSSPHSVISHLP 709
V + ++ D A +P+ ++W A+ P++ LA C ++ L + +HLP
Sbjct: 252 VLDEEFQDMCRDIAADPLTFTQW-AKADAPYEFLAWCFEYAQYLDLVEEGRADEFRTHLP 310
Query: 710 IHQDGSCNGLQHYAALGRNTL 730
+HQDGSC+G+QHY+A+ R+ +
Sbjct: 311 VHQDGSCSGIQHYSAMLRDEV 331
>gi|11466088|ref|NP_049543.1| RNA polymerase [Neurospora intermedia]
gi|4877818|gb|AAD31445.1| RNA polymerase [Neurospora intermedia]
Length = 896
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 131/246 (53%), Gaps = 20/246 (8%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
+S+A+ MKD + FY +D+RGR Y LN ++ R +L F EG+ L GL+ L
Sbjct: 415 ISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELARSLLLFKEGQKLNDIGLKAL 474
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KI+ AN F G++K S + RL +VE +L++I D I+ W A++P LA +
Sbjct: 475 KIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----IDNYEIWREADEPLLFLACALE 527
Query: 692 LSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA---GEKPADVYS 748
L P + ISHLPI D +CNGLQH +A+ + + A VNL+ + P D+YS
Sbjct: 528 LKGY--KEDP-NFISHLPILMDATCNGLQHLSAMVNDFVLAEKVNLLKSTENDNPRDLYS 584
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
E+ + K++ + + L +I V+R LVK+ +MT YG T G +QI
Sbjct: 585 EVIPHI----KQEILEASKSYEHTNLERI---NVERCLVKRGLMTITYGATERGIYDQIV 637
Query: 809 RRLEEK 814
+ +K
Sbjct: 638 SKFFQK 643
>gi|291335906|gb|ADD95501.1| T7-like RNA polymerase [uncultured phage MedDCM-OCT-S08-C41]
Length = 781
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 122/474 (25%), Positives = 206/474 (43%), Gaps = 73/474 (15%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
WGR + KLG L++ + E + + D+R Q+ KR
Sbjct: 176 WGRALRVKLGGWLLDCICEVS---------GWFLIDMR---------------QQGNKRT 211
Query: 417 GVVECDPLVLEGLDR--SAKHMLIPYV-PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRK 473
V P +E D+ + + P PML+PP W GGYL + VMR + +
Sbjct: 212 NYVIPSPAFMEIKDQVMAQAELFSPLAWPMLIPPNDWDTERPGGYLL--NEVMRGYDMVR 269
Query: 474 QQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP 533
+ L + G + L+ + + +N V+ V +++ + V + +V +P
Sbjct: 270 RGNPL-CIQG---ETPINFLNHIQKVAFTLNPFVVDVAQTLMERRVEVGKFVPQVEVPLP 325
Query: 534 EKPLSEDMTEVQKWKWSVRKAKKINQERHSQ----RCDTELKLSVARRMKDEEGFYYPHN 589
KP D+ + + + S R+A ++Q C T + ++ +D + FY P +
Sbjct: 326 PKP--ADIDDNKDSEMSYRRAAAEAYNYNAQAFQRSCRTRMTMNAVEVFQDVDKFYIPWS 383
Query: 590 LDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHD 649
LD+RGRAYP+ L +D + +L+F EG + WL +A + G++K
Sbjct: 384 LDYRGRAYPIPAFLTPQDTDFGKSLLKFYEGSFMTPEAEDWLAFQVATTYGRGLDKAPIQ 443
Query: 650 GRLAF-VENHLYEIFDS-AENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI-- 705
RL + ++NH ++ +S A +P W A++P+ LAAC H VI
Sbjct: 444 ERLQWTLDNH--DLIESIALDPDGYLHEWEVADEPWTFLAAC--------DEYFHCVIQC 493
Query: 706 ----SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ LP+ D +C+GLQ + L R+ AA VN++ E P D Y +A
Sbjct: 494 DRNHTSLPVACDATCSGLQILSGLSRDASTAALVNVLPSEVPQDAYKVVA---------- 543
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ + + + + +DRK+VK+ VMT Y R I+ L+EKG
Sbjct: 544 ------EQAKPHVPECIRPYMDRKVVKKVVMTVPYNSKPFSNRSYIRAALKEKG 591
>gi|402588219|gb|EJW82153.1| DNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 319
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 86/129 (66%), Gaps = 2/129 (1%)
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
+P + +SHLPI+QDGSCNGLQHYAALGR+ VNLV EKP+DVYS +A RV +
Sbjct: 1 NPTTFVSHLPIYQDGSCNGLQHYAALGRDQEGGKEVNLVPAEKPSDVYSSVAARVEQKRL 60
Query: 760 RDSNKDPSK-HPQAL-LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 817
D S+ H AL L ++ V RK++KQTVMT+VYGVT GAR QI+R+L+
Sbjct: 61 EDEQSPESEVHDLALSLRTVMPGPVSRKVIKQTVMTTVYGVTMNGARRQIERQLKAMEID 120
Query: 818 TDDRQLFAA 826
+++R +A
Sbjct: 121 SNERMKYAT 129
>gi|338827175|ref|YP_004539106.1| hypothetical protein LIMEzero_ORF33 [Pantoea phage LIMEzero]
gi|332800724|emb|CBY88564.1| hypothetical protein [Pantoea phage LIMEzero]
Length = 810
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/380 (28%), Positives = 168/380 (44%), Gaps = 31/380 (8%)
Query: 440 YVPMLVPPKKWKGYNKGGYLFLPS----YVMRTHGSRKQQEALKSVTGNCMKKVFEALDT 495
Y PMLVPP + + G P Y + + +R++ ALK V E
Sbjct: 232 YPPMLVPPVQIAEDGRSGMWQSPGQRDQYRVISRMNRREYRALKIDP----TPVIEPCMA 287
Query: 496 LGSTKWRVNKQVLSVLES--IWVSGGNIAGLVDRNDVLIPE------------KPLSEDM 541
L S +R+N VL +L+ V G + + + IP +P+ + M
Sbjct: 288 LSSVPYRINPLVLELLQRSRTDVMGLPVMPVEPKLPFQIPAGVTFAQYISKFPEPMQQQM 347
Query: 542 -TEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
E ++K R ++ SQ ++ A+R + + Y P D RGR Y
Sbjct: 348 DAEAHEFKVRTRIYHTNMRKFMSQMMALNAAVAEAQRYAEFDKVYLPTYADTRGRIY-YS 406
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
LN D R +LE AE LG GL WLK+H+AN F G + D R + + L
Sbjct: 407 STLNPQGIDGVRALLELAEPVALGDDGLYWLKVHIANSF--GYDATDFDDRAKWTDKALP 464
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
+ ++ P +W A+ P AA + L A+ S +P + + + D +C+GLQ
Sbjct: 465 RLREACRIPEAYDSFWSEADSPITAWAAAVELLRAIDSGNPATYMCRVVTQWDATCSGLQ 524
Query: 721 HYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILI 779
H +A+ R+++ AAVNL+ + + AD+Y ++A E ++R S Q LL
Sbjct: 525 HLSAMLRDSVGGAAVNLLDSPGRKADIYLKVADSALEGLRRSELVSSSPLGQWLLRV--- 581
Query: 780 DQVDRKLVKQTVMTSVYGVT 799
V R K+ VMT VYG T
Sbjct: 582 -GVPRAWAKKPVMTYVYGAT 600
>gi|313244255|emb|CBY15079.1| unnamed protein product [Oikopleura dioica]
Length = 410
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%)
Query: 652 LAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIH 711
L + + + I DS +P+ G RWW T E PFQ LAAC+ + +A + P + + +H
Sbjct: 2 LHYAWQNFHAICDSGRDPLTGYRWWETCEKPFQVLAACMEIWKATQLDDPSQYETKISVH 61
Query: 712 QDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
DG+CNG QHY+A+GR+T+ A N++ E+P+D Y I ++M D + + +
Sbjct: 62 MDGTCNGFQHYSAMGRDTIGAIFTNVLPTERPSDFYQSILDSALKLMDEDIAAEGANFEK 121
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
+AKI V R +VK+ VM YG++ GA + + L K
Sbjct: 122 LRVAKIARKVVTRSIVKRPVMAIPYGLSVRGAVDICRNNLHGK 164
>gi|372217716|ref|YP_005087397.1| RNA polymerase [Cyanophage 9515-10a]
gi|310005637|gb|ADP00025.1| RNA polymerase [Cyanophage 9515-10a]
Length = 776
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/384 (25%), Positives = 174/384 (45%), Gaps = 38/384 (9%)
Query: 438 IPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLG 497
IP+ PML P W GGY + + +M+ H ++ ++ ++T + F L+ L
Sbjct: 236 IPW-PMLTEPNDWSNEKLGGYYY--NALMKGHELTRRGKS--TLTHGELPLKF--LNKLQ 288
Query: 498 STKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP------EKPLSEDMTEVQKWKWSV 551
++RVN VL+V + I VD+ ++P + + +KWK
Sbjct: 289 KVRYRVNNHVLNVAH--YCKDKEIK--VDKFIPIVPAYKPPPPPDIETNKEAHKKWKKET 344
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
R A + + T +L A + K E+ FY + D+RGRAYP+ L +D
Sbjct: 345 RNAHNADCLNFKRSVRTRAQLETAEKFK-EDVFYLCWSFDYRGRAYPIQAFLTPQDTDFG 403
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
+ ++ FA+ P+ + WL I +A + G++K + D R+A+ ++ I A +P
Sbjct: 404 KALIRFADESPVTQDAEDWLAIQVATTY--GLDKATMDERIAWSLDNHELITLIATDPTG 461
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W +A++P+Q ++AC + + L + D +C+GLQ A L ++
Sbjct: 462 CIPEWESADEPWQFMSACHEYYHCIIKKD--KTTTGLMVAVDATCSGLQVLAGLAKDQST 519
Query: 732 AAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTV 791
A+ VN+ + P+D Y +A + L + + + R K+TV
Sbjct: 520 ASLVNVCPADTPSDAYKAVA----------------NEAKKYLPERMHSWMTRSTCKRTV 563
Query: 792 MTSVYGVTFVGAREQIKRRLEEKG 815
MT Y T +R+ IK+ L+E+G
Sbjct: 564 MTIPYNATKDSSRKYIKQSLKEQG 587
>gi|395132388|dbj|BAM29336.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1109
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 172/356 (48%), Gaps = 50/356 (14%)
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK- 546
K+ + ++ LGS + +N QVL + ++ S L + N + ++ + +M K
Sbjct: 513 KIIDCINYLGSIPYTINTQVLKHVLNLIKSIEGEEQLYNNNKI---KELIKLNMHHNTKN 569
Query: 547 -WKWSVRK-------AKKINQERHSQR--CDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ ++RK K N + +S + + L S + Y+ + +D+RGR
Sbjct: 570 LYNLTLRKKYGDISLIHKHNSQYYSDKSIITSALLFSSWCDSSKDNSIYFNYFIDWRGRL 629
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y +L+ ++ R +L F G+ + + GL LKI+ AN F G++KLS++ RL + E
Sbjct: 630 YTDTSYLSFQGGNLARSLLLFKRGQLITEKGLEHLKIYTANCF--GLDKLSYNQRLEWTE 687
Query: 657 NHLYEIF-------DSAENPINGSR--------WWLTAEDPFQCLAACINLSEALKSSSP 701
N+L +I D ++ I+ + + + A++P L+ C+ L S P
Sbjct: 688 NNLEKIISLPNLSDDDFKSMIHNHKPIYSEFYNFMMEADEPLLFLSCCVELKNYY--SDP 745
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK---PADVYSEIAV----RV 754
+ +S+LP++ D +C+GLQH + + +T A VN+V K P DVY+ + + ++
Sbjct: 746 NRFLSNLPVYLDATCSGLQHLSTMINDTNLAKYVNIVKSNKEDIPNDVYTHMVLFVNKKI 805
Query: 755 HEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRR 810
E +K D + A+L I ++RK +K +MT YG T G EQ+K
Sbjct: 806 QEYIKVD-------YSLAILENI---NINRKFIKPGIMTISYGATTRGIAEQLKNN 851
>gi|207345730|gb|EDZ72453.1| YFL036Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 671
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 105/395 (26%), Positives = 174/395 (44%), Gaps = 44/395 (11%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 297 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 356
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 357 EKLSDKKSLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 416
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 417 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 467
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 468 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 518
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 519 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 571
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 572 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 631
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVR 552
+ D VL P P + D T ++ WK V+
Sbjct: 632 GFLDIPGAQDEMVLPPAPPKNSDPTILRAWKLQVK 666
>gi|224110560|ref|XP_002333067.1| predicted protein [Populus trichocarpa]
gi|222838328|gb|EEE76693.1| predicted protein [Populus trichocarpa]
Length = 82
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Query: 433 AKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEA 492
A+HM+IPY+PMLVPP +W+GY+KG +LFLPSYVMR HG+++Q+EA+K ++ VFE
Sbjct: 3 ARHMVIPYMPMLVPPLRWRGYDKGAHLFLPSYVMRIHGAKQQREAVKRTPRKQLQAVFE- 61
Query: 493 LDTLGSTKWRVNKQVLSVLESI 514
DTLG+TKW VNK+VLSV++ I
Sbjct: 62 -DTLGNTKWSVNKRVLSVVDRI 82
>gi|327492533|ref|YP_004347431.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912867|gb|ADO51613.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1356
Score = 112 bits (280), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 107/434 (24%), Positives = 194/434 (44%), Gaps = 66/434 (15%)
Query: 412 TTKRYGVVECDPLVLEGLDRSAKHMLIPY-VPMLVPPKKWK------GYNKGGYLF---- 460
++K+ + C +++ + + I Y +PM+V PKK+K N GGYL
Sbjct: 674 SSKKESIFVCKKEIVDKIGNYFNLLDISYKIPMIVEPKKYKINQNTGQLNLGGYLLNDID 733
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
S ++ + K Q ++ +++ + + S +++N QVL E I +G
Sbjct: 734 FISPLIINNPELKSQSIIREQNN-----IYDMANNISSVAYKINNQVL---EFILENG-- 783
Query: 521 IAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKD 580
++ N ++ P + ++ + K ++ + K+++ +R + + L +A K+
Sbjct: 784 ----LEYNLIIDPNNKSNLELKKEAGHKLTLSEEKELDSFLSKKRLEKNI-LGLALIFKN 838
Query: 581 EEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKS---GLRWLKIHLAN 637
F+ P +D RGR Y M +LN+ S ++ + +L F++G + KS + +LKI AN
Sbjct: 839 IPEFFIPVRIDNRGRVYCMADYLNYQSVELAKSLLLFSKGEKVSKSDQISIDYLKIFGAN 898
Query: 638 LFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAAC---INLSE 694
F G+EK S++ R+ +V + D N NG AE +A C +N
Sbjct: 899 CFGNGLEKKSYNNRVEWVNKNE----DKIINFRNG-ELISEAESKLLFIAFCFEYLNYKN 953
Query: 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV-----AGEKPADVYSE 749
+LK++ ISH P+ D +CNG QH + L + A +NL+ P D Y+
Sbjct: 954 SLKNNDTF-YISHFPVQLDATCNGFQHLSLLTADEPLAGQLNLIPESRDKDSDPKDFYTY 1012
Query: 750 IAVRVHEIMKRDSNKDPSK----------HPQALLAKIL-----IDQVD--------RKL 786
I ++ + + + SK + + KIL ID +D RKL
Sbjct: 1013 ICFKLKDHLVKKKGDLESKIKKIEISSKLDLEVIEEKILPIKEEIDSIDNLLKLELHRKL 1072
Query: 787 VKQTVMTSVYGVTF 800
+K +M Y +F
Sbjct: 1073 IKIPIMVKPYNASF 1086
>gi|194380978|dbj|BAG64057.1| unnamed protein product [Homo sapiens]
Length = 927
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/399 (24%), Positives = 177/399 (44%), Gaps = 33/399 (8%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLAPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHL--SSDVCRGVLEFAEGRPLG-KSGLRWLKIH 634
PH H SS + L PL + GL ++ +H
Sbjct: 809 CPPHFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVH 847
>gi|345870379|ref|ZP_08822332.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
gi|343921951|gb|EGV32660.1| DNA-directed RNA polymerase bacteriophage type [Thiorhodococcus
drewsii AZ1]
Length = 1072
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 168/365 (46%), Gaps = 54/365 (14%)
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQ 545
++ A++ + WR+N+ +L + + IA L+ P ++D ++
Sbjct: 321 FQRYVAAINVQQAVHWRINRPLLQWTQQL------IA--------LVNAPPANDDDASLR 366
Query: 546 KW-KWSVRKAKKINQ-----ERHSQRCDTEL------KLSVARRMKDEEGFYYPHNLDFR 593
W K + + + N ER ++ D L +L + + D FY P D+R
Sbjct: 367 DWIKDHLYRPRPANGTRKTFERPAEFLDNPLASRALDELCPSDPLVDPPTFYLPWKADYR 426
Query: 594 GRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG-------GV--- 643
GR YP L D+ RG+LEFA G+ L +SG+ L+ H ANL G+
Sbjct: 427 GRIYPQTSWLTPQGGDLQRGLLEFARGQVLNESGVHALRRHGANLVERSRLLTDLGISDR 486
Query: 644 EKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS 703
+ ++ + R + +H I SA +P+ W A+ P Q LA C+ + P +
Sbjct: 487 QVVTLNERERWTRDHEAAILASAADPLAEPFWRDVADKPMQFLAFCLAYRQ--WKQHPDA 544
Query: 704 VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYSEIA-VRVHEIMKR 760
I HLP+ DG+CNG+QH AAL N A AVN++ A + PAD+YSE+A + +
Sbjct: 545 RI-HLPVQIDGTCNGIQHIAALTGNRELAEAVNVLPRANDLPADIYSELAEAALKTLGHL 603
Query: 761 DSNKDPSKHPQALL---AKILIDQ-----VDRKLVKQTVMTSVYGV---TFVGA-REQIK 808
K ++H L A + D ++RK K+ VMT YG GA E I+
Sbjct: 604 PIPKGQARHRHGLEWGDAWLATDAAPGAWLNRKTAKRVVMTIPYGAGRSAQAGAVLEAIE 663
Query: 809 RRLEE 813
+RL E
Sbjct: 664 KRLIE 668
>gi|133454|sp|P22372.1|RPOP_CLAPU RecName: Full=Probable DNA-directed RNA polymerase; AltName:
Full=ORF2
Length = 936
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 189/406 (46%), Gaps = 60/406 (14%)
Query: 441 VPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHG----SRKQQEALKSVTGNCMKKVFE 491
+PM+V PK + GGYL +L S + + SR Q++ + ++E
Sbjct: 314 LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLTKKLNMNDISRIQEKNI----------IYE 363
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551
+++ + +T +++NK++L L +V + + L +++T+++
Sbjct: 364 SINKMMATAFQINKKLLKYLLEDYVFSKLLK---------LEGDDLYKNITQIEIDNMDK 414
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
R +K Q+ SQ+ + + +A ++ Y+P LD RGR YP+ + ++ SS++
Sbjct: 415 RDNQKY-QQYLSQKLLRDYIIDIATVFQNVPELYFPLKLDHRGRLYPITAYFHYQSSELA 473
Query: 612 RGVLEFAEGRPLGKS---GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
+ +L FA + +S + +LK + A F ++K S+D RL +V+ + EN
Sbjct: 474 KALLLFAIPDTIERSDSISIDYLKAYGATCFGNKLDKKSYDKRLQWVDAN-------WEN 526
Query: 669 PINGSRWWL--TAEDPFQCLAACIN---LSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
IN L AE+ F LA C+ L++ L S + ++LP+ DG+CNG QH
Sbjct: 527 IINYRNNVLLELAENKFMFLAYCLEIERLNQFLNDDSIENFKTYLPLQLDGTCNGFQHIV 586
Query: 724 ALGRNTLEAAAVNLVAGEK---PADVYSEIA--VRVHEIMKRDSNKDPSKHPQALLAKIL 778
L + +NL K P+D YS + + +H + K+D + D K +++
Sbjct: 587 LLSNEVKLYSQLNLDGKSKNQDPSDFYSFMINQLNIHLLNKKDVSTD--KEDIESYDRLI 644
Query: 779 IDQVDRKLVKQTVMTSVYGV-TFVGAREQIK--------RRLEEKG 815
+ R +KQ +MT Y F A+ I+ + ++EKG
Sbjct: 645 NLGLSRANIKQAIMTKPYNAKDFTVAKYIIETLLIASEDKYIDEKG 690
>gi|357620935|gb|EHJ72947.1| hypothetical protein KGM_20967 [Danaus plexippus]
Length = 1027
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 121/461 (26%), Positives = 190/461 (41%), Gaps = 87/461 (18%)
Query: 223 WFGPLSEAIEREQKMQRTKKQKAAYAP-----HIELLPADKVAVIVMHKMMGLVMAGHED 277
W L EA+ R R + A++AP ++++L D+ ++M++++ LV G E
Sbjct: 582 WRSSLREALIRHLATLRAR-SGASHAPVTLYPYLKVLEVDEFVELMMNEIIKLV-DGSES 639
Query: 278 RCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKE--LLRKRVNS 335
+ +G + Q+ +I + Y+R ++ E+V K + L R ++
Sbjct: 640 YSPTLKLLQRDLGTQVYQKYQI-------EQYRRNGVLKKIEQVYDKYCKWYLERHSLDG 692
Query: 336 LIKSKRVMEAQKLLKNE---------ETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-- 384
+A +LL ++ E PW + + +G L ++I V VN
Sbjct: 693 TDTPYNSRQAWQLLVHQNRDGASLDVEASPWSMEMRQSIGKFLYNIIINDVKVD--VNMF 750
Query: 385 ---------PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
PA Y RP R + HP T R P +
Sbjct: 751 KPNAQVKKLPAVYKVH--RPWGRLVRLELKPHP---TLSRLWSAAARPRL---------R 796
Query: 436 MLIPYVPMLVPPKKWKGYNKGGYLFL--------PSYVMRTHGSRKQQEALKSVTGNCMK 487
+ VP PP W G L P YVM G K+ E T M
Sbjct: 797 LRSSLVPARSPPAPWHSATASGACLLTTTSLIRMPFYVM---GLTKRLEEAPPAT---MY 850
Query: 488 KVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW 547
V + L+ LG W +N+++L + ++ SGG+ + D+ P L + +W
Sbjct: 851 PVLDGLNQLGDVPWVINQRILDLQLKVFRSGGD-----KKLDIPPPASSL-----DASQW 900
Query: 548 KW-------SVRKAKKINQER---HSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY 597
K ++R+ IN+ + HS CD KLS+A ++ F+ PHN+DFRGR Y
Sbjct: 901 KMEGKTGGEALRRRVVINRAKADMHSLWCDALYKLSLANHYRNV-TFWLPHNMDFRGRVY 959
Query: 598 PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
+ PH++ L D R +L A RPLG GL WLKIH NL
Sbjct: 960 AVGPHVSALGPDAARALLRLAGVRPLGARGLDWLKIHAVNL 1000
>gi|10119854|dbj|BAB13497.1| RNA polymerase [Flammulina velutipes]
Length = 1168
Score = 107 bits (267), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 173/376 (46%), Gaps = 59/376 (15%)
Query: 441 VPMLVPPKKWKGYNKGGYLF-LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
+P++ P KW GG+L P+ + + E ++ M ++ ++ L
Sbjct: 584 LPLICEPDKWGEKEIGGFLIKTPTNSSLIRNNNRNFETSHNIKN--MGVSYDVINQLNKI 641
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ 559
K+RVNK + + LE+ GN I +K SE+ + Q
Sbjct: 642 KFRVNKLLYNYLEN----EGN----------YIWQKFDSENPDKFQ-------------- 673
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAE 619
T + L +A+ E FY + +D+RGR Y LN SD+ +L FAE
Sbjct: 674 --------TYITLQIAKTFL-ENIFYLNNFIDWRGRIYNYSFGLNFQGSDLSSSLLVFAE 724
Query: 620 GRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR-WWLT 678
G PL +SG+ + I+LAN + KLS + +FVE + + + + +N + L
Sbjct: 725 GEPLNESGIYYFYINLAN--NHNENKLS---KKSFVERYNW-VVKNYNKIVNLDKDLILG 778
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
AE F L+ + L E K + I + PI D +C+G+QH A L + A A NL
Sbjct: 779 AEKIFNFLSLALVLREYDKDK---NYIVNTPIFLDATCSGIQHVAGLIKEFDLATATNLS 835
Query: 739 AG---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSV 795
+ P D+YS++ +V+ K ++ + L K+ ++ R+++K+++MT V
Sbjct: 836 PANQFDSPNDLYSDVVEKVN---KELNDFGYLNIEYSNLQKV---KLTREILKESIMTKV 889
Query: 796 YGVTFVGAREQIKRRL 811
Y VT G EQIK+++
Sbjct: 890 YNVTIYGMTEQIKKKI 905
>gi|449531519|ref|XP_004172733.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like,
partial [Cucumis sativus]
Length = 234
Score = 106 bits (265), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 68/92 (73%)
Query: 174 KFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIER 233
K+++LR+RQ+K ETEAWE EY++L A + E++LAPNLP++K LFLGWF PL +AI
Sbjct: 143 KYDMLRKRQIKIETEAWEEAAKEYQDLIADICEQKLAPNLPYMKSLFLGWFQPLRDAIVA 202
Query: 234 EQKMQRTKKQKAAYAPHIELLPADKVAVIVMH 265
EQ+ + K+ ++A + LLPAD +AVI MH
Sbjct: 203 EQESVKFKRSSPSHALYFHLLPADMMAVITMH 234
>gi|159487225|ref|XP_001701634.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280853|gb|EDP06609.1| predicted protein [Chlamydomonas reinhardtii]
Length = 311
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 67/107 (62%)
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK 768
P QDG+CNGLQHYAALGR+ AVNLV ++P DVY + +R + PS
Sbjct: 1 PRTQDGTCNGLQHYAALGRDLRGGTAVNLVPADRPQDVYQRVRIRPVAVWVLRHVHVPSS 60
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG 815
+ VDRKLVKQ+VMT VYGVTFVGAR+QI+ LEE+G
Sbjct: 61 FSTCSRPPWIHGHVDRKLVKQSVMTYVYGVTFVGARDQIESPLEERG 107
>gi|260878769|ref|ZP_05891124.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
gi|308091103|gb|EFO40798.1| putative DNA-directed RNA polymerase, bacteriophage type [Vibrio
parahaemolyticus AN-5034]
Length = 724
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 159/363 (43%), Gaps = 48/363 (13%)
Query: 441 VPMLVPPKKWK-GYNKGG-YL--FLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTL 496
+PM+VPP +WK G GG YL + P + +T +R+ + L+ V + +
Sbjct: 33 LPMVVPPVEWKMGMTDGGAYLTSYSPLSLFKTR-NRELLKQLREVKSPEFVHFLDGHNVA 91
Query: 497 GSTKWRVNKQVLSVLESIWVSGGNIAGLVDRND----------------VLIPEKPLSED 540
T ++ + L++L+ I A L + ND +++ KP +
Sbjct: 92 SRTGHCIDVETLNLLKMIVKQPRKFAKLPNFNDEEAEMPLMEADLRTAQMILESKPKNIS 151
Query: 541 MTEVQK---------------WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
E K W+ +KA++ E+ R + + +A +K + Y
Sbjct: 152 NHEYLKRLDGEHKVIVKALIDWRKKTQKARQKAVEKAGARSNLLRTIEIAESLKHYKSIY 211
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
+P D RGR Y P LN +D + ++ F E + +GK+G W++I++ANL G +K
Sbjct: 212 FPTQSDDRGRVYYATPLLNPQGADHEKALILFDEAKEVGKTGWDWMRINVANLM--GYDK 269
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
+ R+A+VE H I NP++ RW T + PFQ L A L +A P
Sbjct: 270 ANFKKRIAYVEAHREMIESCVANPMSDFRWEDT-DKPFQFLQAARELVKAWSMEDPTKFK 328
Query: 706 SHLPIHQDGSCNGLQHYAALGR--------NTLEAAAVNLVAGEKPADVYSEIAVRVHEI 757
S + I D SC+GLQ L R N L A V+ E D+Y E A ++
Sbjct: 329 SRVGIACDASCSGLQILGTLTRCESSMKFTNCL-PAEVDENGEEFMQDIYGEAARIAADL 387
Query: 758 MKR 760
M++
Sbjct: 388 MRK 390
>gi|158251728|ref|YP_001504342.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
gi|122893329|gb|ABM67601.1| DNA-directed RNA polymerase [Pleurotus ostreatus]
Length = 1204
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 185/397 (46%), Gaps = 63/397 (15%)
Query: 427 EGLDRSAKHMLIPY--VPMLVPPKKWKGYNKGGYLF----LPSYVMRTHGSRKQQEALKS 480
E LD K+ ++ +PML P W GG+L + S + GS Q +++S
Sbjct: 620 EYLDFINKNFILYNHSLPMLCKPNLWNEKEYGGFLDNKEKMNSVIT---GSIHQNHSVES 676
Query: 481 VTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
+++++++ L S K ++N ++L+ LES G I +N + +D
Sbjct: 677 -----KDELYKSINKLNSVKLKINNELLTYLES---EGLYILNYYFKNKI--------KD 720
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
T+ ++Q T LKL+ + K + Y N D+RGR Y
Sbjct: 721 QTD------------------YNQNLIT-LKLANSYS-KYQNPIYISCNADWRGRIYTQS 760
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHL 659
+L++ D+ ++ EG L +SGL + I+ AN + + K S D R+ +V+ +
Sbjct: 761 FYLSYQGGDLSSSLINLFEGNSLNESGLNYFYIYGANCHNENDLSKESFDSRINWVKTNY 820
Query: 660 YEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGL 719
+I + ++ I L A++ F + C+N+ K + ++PI+ D +C+G+
Sbjct: 821 DKIINLNKDLI------LKADNLFLFTSFCLNMK---KIHEDKNTKIYMPIYLDATCSGI 871
Query: 720 QHYAALGRNTLEAAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAK 776
QH ++L + VNL + +K D+Y+E+ ++ + + ++P K+P+ K
Sbjct: 872 QHVSSLILDLDSGKKVNLTSQTKDQKVGDIYTELLKPINLAINQKGIENPEKYPEFRHIK 931
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK +K +MT +Y VT +G +Q++ E+
Sbjct: 932 L-----KRKNIKTPIMTKIYNVTVIGIADQLRNSFEK 963
>gi|464682|sp|P33539.1|RPOP_AGABT RecName: Full=Probable DNA-directed RNA polymerase
gi|1325997|emb|CAA44799.1| RNA Polymerase [Agaricus bitorquis]
Length = 1102
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 165/333 (49%), Gaps = 50/333 (15%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
++ +++ L S K+++NK +L+ + + W + + L ++L KP+ E
Sbjct: 527 LYSSINYLNSIKFKINKAMLNFILAEWDNKD--SKLFKGYNML---KPILE--------- 572
Query: 549 WSVRKAKKINQERHSQRCDTELK---LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+K+I +E+ S L +S+A KD E FY P +DFRGR YP+ ++++
Sbjct: 573 ---TDSKEIKEEKVSSNSKYTLYSNIISLASLYKDNE-FYLPVYVDFRGRVYPLSNYISY 628
Query: 606 LSSDVCRGVLEFAEGR-PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
D+ R ++ FA+ + L SG L ++LANL G +KL RL V+ + E +
Sbjct: 629 QGGDLARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVDGIIKEYLE 686
Query: 665 SAENPINGSRWWLTAED----PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
S N I+ +++ D PFQ ++ I ++ L S+P + IS+ PI D SC+G+Q
Sbjct: 687 S--NEISNTKYIEDNIDKISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQ 741
Query: 721 HYAALGRNTLEAAAVNLVAG------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
H AAL A+ VNL + P D Y+ + +I + N D ++
Sbjct: 742 HIAALTLEKELASNVNLYTDSSNPKEDYPQDFYT---YALEKIRDKLINSDITELRDI-- 796
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+++RK++K++VMT Y ++ G E +
Sbjct: 797 ------KLNRKIIKRSVMTIPYNISMAGIGEHL 823
>gi|294462350|gb|ADE76724.1| unknown [Picea sitchensis]
Length = 255
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 64/77 (83%)
Query: 758 MKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHI 817
M+RD+ KDP+ A A++L+ QVDRKLVKQTVMTSVYGVT++GAR+QI++RL+E+G I
Sbjct: 1 MQRDALKDPATDRDAECARVLLGQVDRKLVKQTVMTSVYGVTYIGARDQIRKRLKERGCI 60
Query: 818 TDDRQLFAAACYAAKVS 834
D+ LF+A+CYAA+ +
Sbjct: 61 ADEVALFSASCYAARTT 77
>gi|169646973|ref|YP_001718359.1| RNA polymerase [Fusarium proliferatum]
gi|149131940|gb|ABR20838.1| RNA polymerase [Fusarium proliferatum]
Length = 1062
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 164/389 (42%), Gaps = 48/389 (12%)
Query: 441 VPMLVPPKKWKGYNKGGYL----------FLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
+PM+V PK++ GGYL F + + L S+ N MK
Sbjct: 447 LPMIVKPKEYTITKLGGYLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINNMMK--- 503
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
T +++NK++L L V D++ ++I S E K K
Sbjct: 504 --------TPFKINKELLDYL----VLNN------DKHKLIID----SNKEHEYSKIKNR 541
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+ ++ Q+ S++ + L +A KD Y+P LD RGR YP +LN+ S++
Sbjct: 542 TKIEERKFQQFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSEL 601
Query: 611 CRGVLEFAEGRPLGK---SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+ +L FA + + S + +L + + G+EK S++ R+ +V+ + I D
Sbjct: 602 AKSLLLFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILD--- 658
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALK--SSSPHSVISHLPIHQDGSCNGLQHYAAL 725
S A++ F LA C + K +SS ++LPI DG+CNG QH A +
Sbjct: 659 --FENSDLLEKADEKFLFLAFCFEIRRFNKFLASSDFEFKTYLPIQLDGTCNGFQHLALM 716
Query: 726 GRNTLEAAAVNLVAGEK---PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
++NL K P D YS I + ++ ++ + +++L +
Sbjct: 717 SHELTLFDSLNLSKSSKADNPKDFYSHILTLLEGYLQEKYKNSRNEEERESFSRLLKLGL 776
Query: 783 DRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+R VK+ +MT Y T +K L
Sbjct: 777 NRSNVKKIIMTKPYNSTDTTLSSYLKSSL 805
>gi|49147034|ref|YP_025889.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
gi|34538679|gb|AAQ74287.1| DNA-dependent RNA polymerase [Moniliophthora perniciosa]
Length = 1028
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 171/401 (42%), Gaps = 82/401 (20%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK--------VFEAL 493
PM+V P W GG+L S K +E L +TGN +++ +
Sbjct: 446 PMIVNPNSWSKDTYGGFL-----------SNKSRE-LDIITGNESHDHIIENKALIYQTV 493
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ L S K+ VN +L + S G I + ND L
Sbjct: 494 NYLNSIKFGVNNMLLDYITS--EEGKYILEHIKPNDAL---------------------- 529
Query: 554 AKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRG 613
QR T L VA+ + + FY + D+RGR Y L++ S D+
Sbjct: 530 ----------QRTIT---LEVAK-LYERGPFYLNTHADWRGRIYTQSFFLSYQSGDLSLS 575
Query: 614 VLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
+L F EG + + G +L I+ AN + + K S R+ +V + +I + I
Sbjct: 576 LLNFWEGEKVNEEGKFYLYIYGANSHNQNKISKASFKDRIDWVNKNYDKIINLDRELI-- 633
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
LTAE PF A C+N+ E ++P+++I P+ D SC+G+QH AAL ++
Sbjct: 634 ----LTAESPFIFTAFCLNMREI--HNNPNALIK-TPVFLDASCSGIQHLAALMKDLELG 686
Query: 733 AAVNLVAG---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
A NL+ EKP D+Y R+ E + + NK ++ + + ++ ++ RK VK
Sbjct: 687 ANTNLIESTIEEKPGDIYE----RLLEPINKAINKFGEENIEYSMLSLV--KLTRKEVKV 740
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYA 830
+MT VY VT G Q++ + D ++F Y
Sbjct: 741 PIMTKVYNVTKYGISNQLQSIFKNI-----DEEIFVDEFYT 776
>gi|320156443|ref|YP_004188822.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
gi|319931755|gb|ADV86619.1| DNA-directed RNA polymerase [Vibrio vulnificus MO6-24/O]
Length = 758
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 140/325 (43%), Gaps = 62/325 (19%)
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
++ +W+ + +KA++ + E+ R + + +A +K Y+P D RGR Y
Sbjct: 203 LSTFNQWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYAT 262
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
P LN +D + ++ F + +GK+G WL+I+++NL G +K + R+A+VE H
Sbjct: 263 PLLNPQGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKKRIAYVEAHRE 320
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
I NP++ RW T + PFQ L A L +A K P S + I D SC+GLQ
Sbjct: 321 MIESCVANPMSDYRWEHT-DKPFQFLQAARELVQAWKMEDPTKFKSRVGIACDASCSGLQ 379
Query: 721 HYAALGR--------NTLEAAAVNLVAGEKPADVYSEIA---------VRVHEIMKRDSN 763
L R N L A V+ E D+Y E A V++ E+ R N
Sbjct: 380 ILGTLTRCESSMKFTNCL-PAEVDENGEEFMQDIYGEAARIAAELMRKVQLGELEARKYN 438
Query: 764 ---------KDPSKHPQAL---LAKI----LIDQVDRKL--------------------- 786
KDP+K Q + LAKI D+ RK
Sbjct: 439 EYEVTGRPLKDPAKEAQRIAKQLAKIEKQKAKDEAQRKADREHAEKLLNWSYAMKDEYSF 498
Query: 787 ----VKQTVMTSVYGVTFVGAREQI 807
+K+ MT YG G R+Q+
Sbjct: 499 TRNWLKRNTMTFFYGSAQFGMRDQL 523
>gi|116072263|ref|ZP_01469530.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
gi|116064785|gb|EAU70544.1| DNA-directed RNA polymerase [Synechococcus sp. BL107]
Length = 809
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 154/340 (45%), Gaps = 29/340 (8%)
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--RNDVL---IPEKPLSEDMTEVQKW 547
L+TLG T ++V+ V V++ W + +IAG N L +P+ + D +
Sbjct: 297 LNTLGRTAFQVDPLVFEVIDDCWETQRSIAGFNSPFENPELNQEMPDHLKALDKKHPDRV 356
Query: 548 KWSVRKAKKINQER-HSQRCDT-ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
W R+A +QE+ H ++ + + L AR+ + + F+ + DFRGR Y L+
Sbjct: 357 AWRKRQAYLHDQEQEHIEKTQSAQAVLISARKNETRQRFWLSWSCDFRGRIYSQQSWLDP 416
Query: 606 LSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDS 665
S D R VL FA+G L + G W + F G K S+ R + + I
Sbjct: 417 QSRDFERSVLRFADGCRLDEQGKEWAARAVGAAFGG--TKQSYAARSQWTYENTELIAAI 474
Query: 666 AENPINGSRWWLTAEDPFQCLAACINLSE-ALKSSSPHSVISHLPIHQDGSCNGLQHYAA 724
A +PI S W A++P+Q L + + L+ + P + +P+ D + +GLQ +A
Sbjct: 475 ASDPIRHSSQWENADEPWQFLQMAMEWNAVVLQQTKP---LWQVPVSVDSTASGLQLLSA 531
Query: 725 LGRNTLEAAAVNLVAGEKPA----DVYSEIAVRVHEIMKRDSNKDPSKHPQAL-LAKILI 779
+ R+ + NL+ E P D Y E+ EI + D PQ + LAK L
Sbjct: 532 MRRDPVGMKWTNLIPSEDPDQPPRDAYLEVLRVAREIAEAD--------PQTVWLAKHL- 582
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
DR L K +M ++YG ++ R I L + G D
Sbjct: 583 --TDRSLGKPVLMIAIYGGSYRTNRGDIVDALRKLGSYPD 620
>gi|262155779|ref|ZP_06028902.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|379741344|ref|YP_005333313.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|421332625|ref|ZP_15783103.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|424601712|ref|ZP_18040858.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
gi|262030370|gb|EEY49011.1| DNA-directed RNA polymerase [Vibrio cholerae INDRE 91/1]
gi|378794854|gb|AFC58325.1| DNA-directed RNA polymerase [Vibrio cholerae IEC224]
gi|395929232|gb|EJH39982.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1046(19)]
gi|395976865|gb|EJH86304.1| DNA-dependent RNA polymerase family protein [Vibrio cholerae
CP1047(20)]
Length = 758
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 140/325 (43%), Gaps = 62/325 (19%)
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMH 600
++ +W+ + +KA++ + E+ R + + +A +K Y+P D RGR Y
Sbjct: 203 LSTFNQWRTAKQKARQRSVEQAGARSNLMRTIEIADSLKMYTSIYFPTQSDDRGRVYYAT 262
Query: 601 PHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLY 660
P LN +D + ++ F + +GK+G WL+I+++NL G +K + R+A+VE H
Sbjct: 263 PLLNPQGADHEKALILFDVAKEIGKTGWDWLRINVSNLM--GYDKGNFKQRIAYVEAHRD 320
Query: 661 EIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
I NP++ RW T + PFQ L A L +A K P S + I D SC+GLQ
Sbjct: 321 MIESCVANPMSDYRWEHT-DKPFQFLQAARELVQAWKMEDPTKFKSRVGIACDASCSGLQ 379
Query: 721 HYAALGR--------NTLEAAAVNLVAGEKPADVYSEIA---------VRVHEIMKRDSN 763
L R N L A V+ E D+Y E A V++ E+ R N
Sbjct: 380 ILGTLTRCESSMKFTNCL-PAEVDENGEEFMQDIYGEAARIAAELMRKVQLGELEARKYN 438
Query: 764 ---------KDPSKHPQAL---LAKI----LIDQVDRKL--------------------- 786
KDP+K Q + LAKI D+ RK
Sbjct: 439 EYEVTGRPLKDPAKEAQRIAKQLAKIEKQKAKDEAQRKADREHAEKLLNWSYAMKDEYSF 498
Query: 787 ----VKQTVMTSVYGVTFVGAREQI 807
+K+ MT YG G R+Q+
Sbjct: 499 TRNWLKRNTMTFFYGSAQFGMRDQL 523
>gi|478704|pir||S26945 DNA-directed RNA polymerase (EC 2.7.7.6) - Podospora anserina
mitochondrion plasmid pAL2-1
Length = 948
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 184/375 (49%), Gaps = 41/375 (10%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGST 499
+PM+V PK + GGYL Y+ K++ L+ T ++F+ ++ L S
Sbjct: 342 MPMMVKPKPYTTRVNGGYLSNDLYM--NENIVKEKWNLRDNTQILHFNQMFDLVNNLSSM 399
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIP--EKPLSEDMTEVQKWKWSVRK--AK 555
+++N VL +E+ G + +N+++ P PL++ +K K + AK
Sbjct: 400 GYKINTDVLDFIETY---GSDYF----KNELMDPRYSHPLTKKSKLTKKEKMELDSFLAK 452
Query: 556 KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVL 615
K QE L +A ++ F+ P N DFRGR Y +LN+ S+D+ + +L
Sbjct: 453 KETQENM---------LGLAEMFRNIPEFFMPVNADFRGRVYCTPEYLNYQSTDLAKSLL 503
Query: 616 EFAE-GRPLGKS--GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
F++ GR K L +LK++ + F G++KLS + R+ +V+ +L ++ +N NG
Sbjct: 504 LFSKPGRMYKKDYIALSYLKMYGGSSF--GLDKLSANDRIKWVDKNL----NNMKNYRNG 557
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVI---SHLPIHQDGSCNGLQHYAALGRNT 729
+ A++ F LA CI + L H V ++LPI D +CNG QH + L ++
Sbjct: 558 -KLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDATCNGFQHLSLLSLDS 616
Query: 730 LEAAAVNLVAG---EKPADVYSEIAVRVHEIMKRDS--NKDPSKHPQALLAKILIDQVDR 784
+ +NL + P D Y+ + V + +K ++ NK+ + +++ ++ R
Sbjct: 617 NLSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTETLENKNLTPKESESYNRLINMKIIR 676
Query: 785 KLVKQTVMTSVYGVT 799
+++K+ +MT Y V+
Sbjct: 677 EIIKKGIMTMPYNVS 691
>gi|2500645|sp|Q01521.1|RPOP_PODAS RecName: Full=Probable DNA-directed RNA polymerase
gi|4585700|emb|CAA43116.2| RNA polymerase [Podospora anserina]
Length = 948
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 181/387 (46%), Gaps = 39/387 (10%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGST 499
+PM+V PK + GGYL Y+ K++ L+ T ++F+ ++ L S
Sbjct: 342 IPMIVKPKPYTTRVNGGYLSNDLYI--NENIVKEKWNLRDNTQILHFNQIFDLVNNLSSI 399
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ 559
+++N VL +E + G + +N+++ P + KK
Sbjct: 400 GYKINTDVLDFIE---LYGSDYF----KNELIDPRYS--------HPLLKKSKLTKKEKM 444
Query: 560 ERHSQRCDTELK---LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E S EL+ L +A ++ F+ P N DFRGR Y +LN+ S+D+ + +L
Sbjct: 445 ELDSFLAKKELQENILGLAEIFRNIPEFFIPVNADFRGRVYCTPEYLNYQSTDLAKSLLL 504
Query: 617 FAE-GRPLGKS--GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
F++ GR K L +LKI+ + F G++KLS + R+ +V+ +L ++ +N NG
Sbjct: 505 FSKPGRMYKKDYIALSYLKIYGGSSF--GLDKLSANDRIKWVDKNL----NNIKNYRNG- 557
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVI---SHLPIHQDGSCNGLQHYAALGRNTL 730
+ A++ F LA CI + L H V ++LPI D +CNG QH + L ++
Sbjct: 558 KLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDATCNGFQHLSLLSLDSN 617
Query: 731 EAAAVNLVAG---EKPADVYSEIAVRVHEIMKRD--SNKDPSKHPQALLAKILIDQVDRK 785
+ +NL + P D Y+ + V + +K + NK+ + +++ ++ R+
Sbjct: 618 LSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTELLENKNLTPKESESYNRLINMKIIRE 677
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLE 812
++K+ +MT Y V+ I+ E
Sbjct: 678 IIKKGIMTIPYNVSNFSLINYIREGFE 704
>gi|395132392|dbj|BAM29339.1| rnapol (mitochondrion) [Lentinula edodes]
Length = 1248
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 109/397 (27%), Positives = 180/397 (45%), Gaps = 69/397 (17%)
Query: 422 DPLVLE----GLDRSAKHMLIP--YVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQ 475
DP +LE L+ K+++I +PML P W + GG+L G+
Sbjct: 626 DPFLLELNKEYLEDIKKNLIIDPKTLPMLCKPLDWTENSYGGFL-----SNEIRGNDIIT 680
Query: 476 EALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK 535
+ + N + +F ++ S K+ VN ++L L S S G+ +L K
Sbjct: 681 GSNDHIVQN-RESLFNTVNNFNSIKFGVNTKLLKYLLS---SEGSY--------ILESIK 728
Query: 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
P E QR T LK+ + FY D+RGR
Sbjct: 729 P-----------------------EDELQRALT-LKIG---ELYSNTFFYLNTQTDWRGR 761
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAF 654
Y +L++ + D+ +L F EG+P+ G +L I+ AN + + K S+ RL +
Sbjct: 762 IYVQSFYLSYQAGDLSTALLNFWEGQPINDEGRFYLYIYGANSHNENNISKASYTDRLKW 821
Query: 655 VENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDG 714
V+N+ +I + N I L+AE+PF A C+NL E +P+++IS P+ D
Sbjct: 822 VKNNYNKIINLDRNLI------LSAENPFIFTAFCLNLREI--HYNPNAIIS-TPVFLDA 872
Query: 715 SCNGLQHYAALGRNTLEAAAVNLVAG---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQ 771
+C+G+QH AAL R+ + NL+ EKP D+Y + ++ R NK ++ Q
Sbjct: 873 TCSGIQHLAALLRDLDLGSNTNLIPSTKDEKPGDIYDTMLGYIN----RAINKLGEENIQ 928
Query: 772 ALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIK 808
+ + ++ RK +K +VMT VY V+ G +Q++
Sbjct: 929 YGIFTYI--KLVRKEIKPSVMTKVYNVSKYGISQQLQ 963
>gi|227976930|gb|ACP44057.1| putative RNA polymerase [Vibrio phage 5486]
gi|227976932|gb|ACP44058.1| putative RNA polymerase [Vibrio phage 4e]
Length = 209
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L + RR DE+ Y+P +D+R R Y HLN SD+ + +L +PLGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC-LAACI 690
K H+A F G +K + R + E + I + ++P+N D F C LAA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYS 748
L EAL S P S++ + D + +G QH++A+ R+ + NL AD+Y
Sbjct: 117 QLIEALDSPDPEKYKSNIAVALDATNSGGQHFSAMLRDPIGGKLTNLFWDGNLTKADLYM 176
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQA 772
++ R +K + +DP QA
Sbjct: 177 DVKQRTDSKIKV-ALRDPETIVQA 199
>gi|227976920|gb|ACP44052.1| putative RNA polymerase [Vibrio phage 6e]
gi|227976924|gb|ACP44054.1| putative RNA polymerase [Vibrio phage 5312]
gi|227976926|gb|ACP44055.1| putative RNA polymerase [Vibrio phage 512]
gi|227976928|gb|ACP44056.1| putative RNA polymerase [Vibrio phage 5e]
Length = 209
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 9/204 (4%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L + RR DE+ Y+P +D+R R Y HLN SD+ + +L +PLGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKPLGKRGLFWL 60
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC-LAACI 690
K H+A F G +K + R + E + I + ++P+N D F C LAA I
Sbjct: 61 KSHVATCF--GFDKPLFEERAKWTEERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYS 748
L EAL S P S++ + D + +G QH++A+ R+ + NL AD+Y
Sbjct: 117 QLIEALDSPDPEKYESNIAVALDATNSGGQHFSAMLRDPIGGKLTNLFWDGNLTKADLYM 176
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQA 772
++ R +K + +DP QA
Sbjct: 177 DVKQRTDSKIKV-ALRDPETIVQA 199
>gi|89148150|gb|ABD62819.1| mitochondrial single-subunit RNA polymerase [Planoprotostelium sp.
ATCC 50597]
Length = 297
Score = 100 bits (248), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 73/115 (63%), Gaps = 7/115 (6%)
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALG + + A VNLV + P DVYS +A V KR + + H L
Sbjct: 1 CNGLQHYAALGGDEIGAKKVNLVPSDSPQDVYSGVATVV---AKRVHDDALAGHE---LG 54
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKG-HITDDRQLFAAACY 829
K+L +VDRK+VKQTVMTSVYGVT++GAR QI L +K DD QL+ A+ Y
Sbjct: 55 KLLDGKVDRKVVKQTVMTSVYGVTYIGARLQIHNALSDKEIDWRDDDQLYHASAY 109
>gi|158297512|ref|XP_317735.4| AGAP007778-PA [Anopheles gambiae str. PEST]
gi|157015231|gb|EAA12908.5| AGAP007778-PA [Anopheles gambiae str. PEST]
Length = 869
Score = 99.0 bits (245), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 11/177 (6%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTGNCMKKVFEALDTLGST 499
VPML PP+ W GGY+ S ++R H + +Q E + M +AL+ L S
Sbjct: 696 VPMLCPPQPWSTPRNGGYILAESDLIRLPHQAHQQTERIDDAEPQDMYPTLDALNQLASI 755
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSE-----DMTEVQKWKWSVRKA 554
W VN Q+L V+ ++ +GGN V +P P++E +M+ +K+ ++
Sbjct: 756 PWVVNGQILDVIVEVFNNGGNAKLDVPEPPSSLP--PVTETVPRSEMSGYEKYHLLRKRL 813
Query: 555 --KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
++ + +S CD +LS+A +D+ F+ P N+DFRGR YP+ PHLNHL D
Sbjct: 814 YHRRKQGDMYSLWCDALYRLSLASHYRDKV-FWLPQNIDFRGRVYPIPPHLNHLGHD 869
>gi|13959703|sp|P33541.2|RPOP_NEUIN RecName: Full=Probable DNA-directed RNA polymerase
gi|578158|emb|CAA36326.1| RNA polymerase [Neurospora intermedia]
Length = 811
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 72/384 (18%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN--------CMKKVFEA 492
+PM+ PP W +GG L + + Q E+L V G+ K++
Sbjct: 243 LPMVCPPLPWGHGIRGGNL--------INLTDTQDESL--VVGSFHHRHKIAITDKLYNV 292
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ L + K+++N +LS L++ G I + +
Sbjct: 293 INKLNAFKFKINGDLLSYLQN---EGSFILDFYK-----------------------NTK 326
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
K IN + + +AR + FY N+D+RGR Y +L++ S++
Sbjct: 327 KDTYINNM---------ITIDIARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSL 376
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGG--VEKLSHDGRLAFVENHLYEIFDSAENPI 670
++ EG+ L + GL + ++ AN+++ G K S R +V +L I + I
Sbjct: 377 ALINLFEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNIIAMDKEFI 436
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
L AE P A C+ + + LK + + V + PI D +C+G+QH+AA+ +
Sbjct: 437 ------LKAESPTLFAAFCLTMRK-LKENPDYPVFN--PIFLDATCSGVQHFAAMLLDLE 487
Query: 731 EAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
VNL+ +GE D YS++ +++ + + K K + I ++R L+K+
Sbjct: 488 LGKYVNLINSGESVNDFYSQLIPAINKAINESAEK---KFKNLKFSDI---SLNRSLLKK 541
Query: 790 TVMTSVYGVTFVGAREQIKRRLEE 813
+MT Y VT G EQ+K +LE+
Sbjct: 542 VIMTKSYNVTTYGITEQLKSKLEK 565
>gi|356507250|ref|XP_003522382.1| PREDICTED: uncharacterized protein LOC100794785 [Glycine max]
Length = 363
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 52/55 (94%)
Query: 780 DQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+Q+DRKLVKQTV TSVYGVTFVGAREQIKRRLEEKG ITD++ LFAAACYAAKV+
Sbjct: 36 EQIDRKLVKQTVRTSVYGVTFVGAREQIKRRLEEKGLITDEKLLFAAACYAAKVT 90
>gi|13959456|sp|O03685.1|RPOP_GELSP RecName: Full=Probable DNA-directed RNA polymerase
gi|1805213|gb|AAB41448.1| ORF1 [Gelasinospora sp. G114]
Length = 831
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS--G 641
FY N+D+RGR Y +L + S++ ++ EG+ L + GL + ++ AN+++ G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
K S R +V +L I ++ I L AE P A C+ + + LK +
Sbjct: 428 KFSKKSFQDRFNWVVENLDNIIAMDKDFI------LKAESPTLFAAFCLTMRK-LKENPD 480
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKR 760
H V + PI D +C+G+QH+AA+ + VNL+ +GE D YS++ +++ +
Sbjct: 481 HPVFN--PIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINE 538
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ K K + I ++R L+K+ +MT Y VT G EQ+K +LE+
Sbjct: 539 SAEK---KLKNVKFSDI---SLNRSLLKKVIMTKSYNVTTYGITEQLKSKLEK 585
>gi|32455893|ref|NP_862205.1| rna polymerase [Blumeria graminis f. sp. hordei]
gi|28300411|gb|AAO37818.1| RNA polymerase [Blumeria graminis f. sp. hordei]
Length = 973
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 175/381 (45%), Gaps = 35/381 (9%)
Query: 429 LDRSAKHMLIPY-VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKS-VTGNCM 486
L+ K + IP +PM+V PK + GGYL ++K A+ S + N +
Sbjct: 347 LNVKNKALSIPLNLPMIVKPKPYSENKLGGYLLNDVEYDEGIFTKKIGYAIPSTIQENSI 406
Query: 487 KKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQK 546
V+ ++ + T ++VNK++L+ L + +I L+ D K L+ + Q+
Sbjct: 407 --VYFVVNKMMETSFKVNKELLNYL----LRYNHIHKLLIDPD--FEHKLLNVKRNKAQE 458
Query: 547 WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 606
++ Q+ S++ E + +A+ + ++P LD RGR YP ++
Sbjct: 459 KEY---------QQFLSKKLLEEYIIKIAQTYSNVPEIFFPIKLDNRGRLYPKTAFFHYQ 509
Query: 607 SSDVCRGVLEFAEGRPLGKS---GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF 663
S++ + ++ FA + +S + +LK + A F G+ + S+ RL +V+N+ +I
Sbjct: 510 GSELAKALILFARPDLIKRSDKEAIEYLKAYGATCFGNGLNRKSYTKRLDWVDNNWDQII 569
Query: 664 DSAENPINGSRWWLTAEDPFQCLAACINL---SEALKSSSPHSVISHLPIHQDGSCNGLQ 720
D + + AE+ F L+ CI + + L + H ++LPI DG+CNG Q
Sbjct: 570 DFENSGLVDE-----AEEKFLFLSFCIEMKRFNNFLSNEYIHEFKTYLPIQLDGTCNGFQ 624
Query: 721 HYAALGRNTLEAAAVNLVAGEK---PADVYSEIAVRVH-EIMKRDSNKDPSKHPQALLAK 776
H A L T +NL+ +K P D Y I +++ + KR P + Q+ +
Sbjct: 625 HLALLSNETKLFETLNLLDAKKSDDPKDFYEHIVNQINIHLEKRRVLIFPDEQKQS-YTR 683
Query: 777 ILIDQVDRKLVKQTVMTSVYG 797
+L + R VK +MT Y
Sbjct: 684 LLRLGLSRSNVKPVIMTKPYN 704
>gi|13811419|gb|AAK40111.1| DNA polymerase [Pleurotus ostreatus]
Length = 993
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/404 (22%), Positives = 178/404 (44%), Gaps = 84/404 (20%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKK--------VFEA 492
+PM+ P W + GG+L + + + +TG+ K +++
Sbjct: 414 LPMICKPNFWSENSYGGFL------------ENENKRIDVITGSSDHKHKIENRNLLYKV 461
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ + STK+ +N L+ ++ + + L+ E
Sbjct: 462 INLVSSTKFSINNLFLNYIK-------------NEGNYLLNE------------------ 490
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
I E QR T L V+ + FY + D+RGR Y + + D+
Sbjct: 491 ----IKAEDEMQRIIT---LKVSETFSNT-PFYLNVHADWRGRIYTKSFFITYQGGDLTT 542
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
+LEF +G P+ + G +L I+ AN + + K S+ R+ +V + +I + ++ I
Sbjct: 543 ALLEFFDGEPINEKGKYYLYIYGANNHNMNKISKASYIDRINWVNQNYDKIINLDKDLI- 601
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
L+A++PF C+N+ E K +P+ V+ P+ D +C+G+QH AA+ ++
Sbjct: 602 -----LSADNPFTFATFCLNMREIHK--NPNFVLK-TPVFLDATCSGIQHLAAMLQDIEL 653
Query: 732 AAAVNL---VAGEKPADVYSEIAVRVHEIMKR--DSNKDPSKHPQALLAKILIDQVDRKL 786
+ VNL ++P D+Y +I + +++ + + N + S +++R +
Sbjct: 654 GSNVNLKKQYEKDEPGDLYEQITLPINKAINNLGEENNEYSHFKNI--------KLNRNI 705
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRL--EEKGHITDDRQLFAAAC 828
+K+++MT VY V+ G EQ+K + E+K + + L + A
Sbjct: 706 LKRSIMTKVYNVSQFGIAEQLKEKFLNEKKEKLETNVNLISKAL 749
>gi|147865940|emb|CAN78837.1| hypothetical protein VITISV_037333 [Vitis vinifera]
Length = 105
Score = 94.7 bits (234), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +LE AE LGKSGL WLKIHLANL++ GV+KLS++G +AF ENHL +IFDSA+ P+
Sbjct: 38 RAILELAEEHLLGKSGLHWLKIHLANLYAXGVDKLSYEGCVAFTENHLEDIFDSADRPLE 97
Query: 672 GSRWWLTA 679
G RW L A
Sbjct: 98 GRRWCLFA 105
>gi|426387670|ref|XP_004060286.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like [Gorilla
gorilla gorilla]
Length = 266
Score = 93.2 bits (230), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 6/98 (6%)
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLA 775
CNGLQHYAALGR+++ AA+VNL + P DVYS +A +V E+ +R + + ++ +A
Sbjct: 5 CNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQV-EVFRRQNAQRRTR-----VA 58
Query: 776 KILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 59 QVLEGFITRKVVKQTVMTVVYGVTCYGGRLQIEKRLRE 96
>gi|327492538|ref|YP_004347441.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912878|gb|ADO51622.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1107
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 69/375 (18%)
Query: 442 PMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEAL---KSVTGNCMKKVFEALDTLGS 498
PM+V PK W GG+L S + +++ + + KS+ +++ ++ L S
Sbjct: 525 PMIVQPKIWTEDTYGGFLSNDSRELDIITGKEEHDHIIENKSL-------IYQTVNYLNS 577
Query: 499 TKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKIN 558
K+ VN +L + S G I D + P+ L +T
Sbjct: 578 IKFGVNNMLLEYITS--EEGKYIL------DHIKPDNDLQRTIT---------------- 613
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
L VA+ + FY + D+RGR Y L++ S D+ +L F
Sbjct: 614 -------------LEVAK-LYSNIPFYLNTHADWRGRIYTQSFFLSYQSGDLSLSLLNFW 659
Query: 619 EGRPLGKSGLRWLKIHLANLFS-GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSR-WW 676
EG + + G +L I+ AN + K S R+ +V ++ + IN R
Sbjct: 660 EGEKVNEEGKFYLYIYGANSHDQNKISKASFKDRIDWVN-------ENYDKIINLDRELI 712
Query: 677 LTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVN 736
L+AE PF A C+N+ E ++P+ +I P+ D +C+G+QH AAL ++ N
Sbjct: 713 LSAESPFIFTAFCLNMREI--HNNPNVLIK-TPVFLDATCSGIQHLAALMKDLELGTNTN 769
Query: 737 LVAG---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMT 793
L+ EKP D+Y + +++ + + ++ A+L+ + ++ RK VK +MT
Sbjct: 770 LIESTIEEKPGDIYETLLEPINKAINKFGEENIE---YAMLSLV---KLTRKEVKAPIMT 823
Query: 794 SVYGVTFVGAREQIK 808
VY VT G Q++
Sbjct: 824 KVYNVTKYGISNQLQ 838
>gi|156402875|ref|XP_001639815.1| predicted protein [Nematostella vectensis]
gi|156226946|gb|EDO47752.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 25/264 (9%)
Query: 356 PWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKR 415
PW T+ G L++ LI++ + N + + P F H ++ + ++
Sbjct: 177 PWA--TKLLCGCTLIDFLIQSVKID--ANLFNAKSESLLPGFYHSYEF-------RERRK 225
Query: 416 YGVVECDPLVLEGL-----DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHG 470
GV++ +V + D M +PMLVPP+ W+ GG+L P +MR+
Sbjct: 226 IGVIKPHSVVCKLFKGYLADHGDIAMPTTSLPMLVPPRPWRDIRDGGFLIQPVQLMRSTQ 285
Query: 471 SRKQQEALKSVTGNC----MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
+ C + V ++L+ LG+ W+ N ++L + ++ G+ +
Sbjct: 286 EMDDNHD-HMLRYKCDSRELSAVLDSLNYLGTCAWKTNNRILDLAIQVFNDQGDDTLAIP 344
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSV---RKAKKINQERHSQRCDTELKLSVARRMKDEEG 583
V + +PL + + E + + R+A+K+ +E +S R KLSVA +D
Sbjct: 345 GPVVPLELEPLEKSVKEPEARMKQIQEHRRARKLAREHYSLRMTALYKLSVANHFRDRV- 403
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLS 607
F+ P N+DFRGR YP+ PH H+
Sbjct: 404 FWLPLNMDFRGRVYPIPPHCCHVG 427
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
Query: 774 LAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACY 829
+A +L D+V R++VKQTVMT VYGVTFVG R QI+R+L++ D+R LF A+ Y
Sbjct: 430 IATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD--LDERVLFEASAY 483
>gi|10119856|dbj|BAB13498.1| RNA polymerase [Flammulina velutipes]
Length = 1708
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/428 (22%), Positives = 183/428 (42%), Gaps = 83/428 (19%)
Query: 441 VPMLVPPKKWKG-----------YNKGGYLF--LPSY-----VMRTHGSRKQQEALKSVT 482
+PM+ P W+G GGYL L + ++R + K+ + S
Sbjct: 1001 LPMVCQPNLWEGEIDPLSSKYLITKVGGYLLDDLNEFSENRNIIRNNKYNKESSEVSSYQ 1060
Query: 483 GNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEK--PLSED 540
N A++ L K+ +NK +L ++ W ++ D +I E L D
Sbjct: 1061 VN-------AINYLNKQKFDINKDMLEFVKEEW----------NKTDSIIFENCNHLHPD 1103
Query: 541 MTEVQKWKWSVRKAKKINQERHSQRCDTELKL-SVARRMKDEEGFYYPHNLDFRGRAYPM 599
+K + + ++I H+ + L + ++A KD FY+P +DFRGR YP+
Sbjct: 1104 TDSFKK----LNQKERIKVTAHNSKYWNYLNIINLAILFKDT-SFYFPTFMDFRGRIYPI 1158
Query: 600 HPHLNHLSSDVCRGVLEFAE----------GRPLGK-------------SGLRWLKIHLA 636
+ + S+D+ R +L F+ +G + L +LKI++A
Sbjct: 1159 STYFTYQSNDLARSLLLFSNVNHKHSDDILKNTIGHLVSLDNLFLNCHLADLDYLKIYIA 1218
Query: 637 NLFSGGVEKLSHDGRLAFVENH---LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLS 693
N++ G +KL R+ ++ ++ + ++ ++ S +++ E PFQ L++ I+L
Sbjct: 1219 NVYGNGKDKLLLKNRIKWLNSNWEEMINLYQKDKDAFYKSYVYISKE-PFQFLSSFISLY 1277
Query: 694 EALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIA 751
+ + PI D +C+G+QH +AL +N VNL+ E P D Y+ A
Sbjct: 1278 NHILYKQEIKI----PILFDATCSGIQHLSALSKNIDIGKLVNLINNEDQSPNDFYT-FA 1332
Query: 752 VRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+ I ++ +D + L K RK +K +MT Y G ++++
Sbjct: 1333 IN-KSIEAFNTIEDLEFREKTLKLK-----YSRKWLKNIIMTIPYNSKEYGISQKLEEEF 1386
Query: 812 EEKGHITD 819
+K +++
Sbjct: 1387 SDKIFVSN 1394
>gi|159145024|gb|ABW90146.1| RNA polymerase [Pleurotus ostreatus]
Length = 967
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 173/403 (42%), Gaps = 58/403 (14%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PM+ PKKW GGYL + + S + K ++ L +
Sbjct: 273 LPMICEPKKWSENTTGGYLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTVNYLNNIP 332
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE----KPLSEDMTEVQKWKWSVRKAKK 556
+ +N +L L W + N V+ E PLS+ E+ + K+
Sbjct: 333 FEINNTMLDYLLLEWK---------NTNSVIFKEYNKLHPLSK---ELDNNNLDSKMKKE 380
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
I + +S + L+++ M+ E+ Y P LDFRGR YP+ +L++ SD+ R +L
Sbjct: 381 I-LKHNSIHWNYSNILNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLARSLLL 438
Query: 617 FAE-GRPLGKSG---------------------LRWLKIHLANLFSGGVEKLSHDGRLAF 654
F G + + + ++K++LAN+F G+ KL+ + R+ +
Sbjct: 439 FKNVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNRNNRIKW 496
Query: 655 VENHLYEIFD--SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL--PI 710
++ E+ + EN I ++ A++P Q ++ + ++ ++I+ + PI
Sbjct: 497 FNENIKEMLYLLNNENTIFNEKFLNKAKEPAQFISCLLEYNKY-----EQNIITEIKTPI 551
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVHEIMKRDSNKDPSK 768
D +C+G+QH +AL + A VNL+ K P+D Y V ++ + D
Sbjct: 552 LFDATCSGIQHLSALTSDIEIAKLVNLIESTKDEPSDFYEFSITNVVNTIENLPDSDSHL 611
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRL 811
+ L + R +K ++MT Y VT +G +++ +
Sbjct: 612 KNKLLKL-----NLKRSFLKHSIMTVPYNVTNIGIADKLSEQF 649
>gi|78212329|ref|YP_381108.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
gi|78196788|gb|ABB34553.1| DNA-directed RNA polymerase [Synechococcus sp. CC9605]
Length = 507
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 116/508 (22%), Positives = 206/508 (40%), Gaps = 65/508 (12%)
Query: 257 DKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316
D V+ + + K++ + R IG AI++E+R + F + KKI
Sbjct: 43 DHVSFVALRKLIDCIHTKQNQR----THVCTAIGKAIQEELR-NQFFTLNLDEDGKKI-- 95
Query: 317 DTEEVLSKEKELLRKR-VNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE 375
++ L K + + R + + +R + + K++ + W + GS L++ ++
Sbjct: 96 -RDKRLKKPRSTPKYRNLGVKLSMERRLLEKGWAKDDLYQDWPSLLCTQFGSLLLDAAVK 154
Query: 376 TAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH 435
Y + P K + K+ +K V P + E L + +
Sbjct: 155 ERYFEVPT------------------KWVAKNRSEK------FVVPSPALEEHLTKRTEQ 190
Query: 436 M--LIPYVPMLV-PPKKWK------GYNKGGYLFLPSYVMRTHGSRKQQEAL---KSVTG 483
+ L+ +L+ PP W+ +N G LP+ +RK L + +
Sbjct: 191 IDELVTTQEVLIEPPLDWQLQDGEARFNFSGGYHLPT-------TRKPNNPLCRGRHYST 243
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD--RNDVL---IPEKPLS 538
L+TLG T ++V+ QV V++ W +IAG N L +PE +
Sbjct: 244 RFGSDAINLLNTLGRTAFQVDPQVFEVIDDCWDKQHSIAGFNSPFENPQLNQEMPEHLKA 303
Query: 539 EDMTEVQKWKWSVRKA--KKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRA 596
+ + W R+A ++ Q+ + + L AR+ F+ + DFRGR
Sbjct: 304 LENKHPDRVAWRKRQAYLHELEQKHIEKTLSVQAVLFSARKNLTRPRFWLSWSCDFRGRI 363
Query: 597 YPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVE 656
Y L+ S D R VL FA+G L + G W + F G K S R +
Sbjct: 364 YSQQSWLDPQSRDFERSVLRFADGCRLDEQGKEWAARAVGAAFGG--TKQSFASRSQWTY 421
Query: 657 NHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE-ALKSSSPHSVISHLPIHQDGS 715
++ I A +PI S W AE+P+Q L ++ + L+ + P + +P+ D +
Sbjct: 422 DNAELIAAIASDPIRHSSQWENAEEPWQFLQLAMDWNAVVLQQTKP---LWQVPVSVDST 478
Query: 716 CNGLQHYAALGRNTLEAAAVNLVAGEKP 743
+GLQ +A+ R+ + NL+ E P
Sbjct: 479 ASGLQLLSAMRRDPVGMKWTNLIPSEDP 506
>gi|238604555|ref|XP_002396229.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
gi|215468398|gb|EEB97159.1| hypothetical protein MPER_03573 [Moniliophthora perniciosa FA553]
Length = 184
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA-KHMLIP-YVPMLVPPKK 449
+V+PAF H + + GQK GV+ +P V + + + A + L P ++PML+ PK
Sbjct: 2 EVQPAFYHAY---VHQRGQKL----GVIRLNPTVSDRMSKDAVRETLHPRHLPMLIKPKP 54
Query: 450 WKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVT--GNCMKKVFEALDTLGSTKWRVNKQV 507
W YN+GGY++ MR S +QQ L+ + GN ++ V+ LD LGST W++NK++
Sbjct: 55 WLNYNEGGYMYNRVSAMRYKDSVEQQSYLRRASELGN-VELVYAGLDVLGSTPWKINKKI 113
Query: 508 LSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSED----MTEVQKWK-WSVRKAKKINQER 561
V+ +W SG + L D PE+P + + + K K W KA
Sbjct: 114 FDVVLEVWNSGERLGKLPPAGYDEPEPEQPKDGNPKNRVIYITKMKNWLQNKASN----- 168
Query: 562 HSQRCDTELKLSVAR 576
HS RC ++ +AR
Sbjct: 169 HSDRCSVNYRVEIAR 183
>gi|152125995|gb|ABS29326.1| RNA polymerase [Fusarium proliferatum]
gi|152125997|gb|ABS29327.1| RNA polymerase [Fusarium proliferatum]
gi|152125999|gb|ABS29328.1| RNA polymerase [Fusarium proliferatum]
gi|152126001|gb|ABS29329.1| RNA polymerase [Fusarium proliferatum]
gi|152126003|gb|ABS29330.1| RNA polymerase [Fusarium proliferatum]
gi|152126005|gb|ABS29331.1| RNA polymerase [Fusarium proliferatum]
Length = 371
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 127/295 (43%), Gaps = 45/295 (15%)
Query: 441 VPMLVPPKKWKGYNKGGYL----------FLPSYVMRTHGSRKQQEALKSVTGNCMKKVF 490
+PM+V PK++ GGYL F + + L S+ N MK
Sbjct: 107 LPMIVKPKEYTITKLGGYLLNDVEYSEPLFTSKIAYKKSSEVDPKGELYSIINNMMK--- 163
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWS 550
T +++NK++L L V D++ ++I S E K K
Sbjct: 164 --------TPFKINKELLDYL----VLNN------DKHKLIID----SNKEHEYSKIKNR 201
Query: 551 VRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDV 610
+ ++ Q+ S++ + L +A KD Y+P LD RGR YP +LN+ S++
Sbjct: 202 TKIEERKFQQFMSEKMLEQYILKIANTFKDVPEIYFPIMLDNRGRLYPRPAYLNYQGSEL 261
Query: 611 CRGVLEFAEGRPLGK---SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
+ +L FA + + S + +L + + G+EK S++ R+ +V+ + I D
Sbjct: 262 AKSLLLFANPDIINRDDHSSIEYLLAYGGTCYGNGLEKKSYEARIEWVKENWDTILD--- 318
Query: 668 NPINGSRWWLTAEDPFQCLAACINLSEALK--SSSPHSVISHLPIHQDGSCNGLQ 720
S A++ F LA C + K +SS ++LPI DG+CNG Q
Sbjct: 319 --FENSDLLEKADEKFLFLAFCFEIRRFNKFLASSDFEFKTYLPIQLDGTCNGFQ 371
>gi|224114325|ref|XP_002332398.1| predicted protein [Populus trichocarpa]
gi|222832721|gb|EEE71198.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 259 VAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKR-----KK 313
++VI MH++ +VM G E C +V AA IG AIEQEIRIH+ LEKT+ K K
Sbjct: 1 MSVIAMHQLAAMVMTGGEHGCARVGTAACMIGDAIEQEIRIHNILEKTRKKKEKANDSKN 60
Query: 314 IIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLK-NEETKPWGRDTQAKLGSRLV 370
+ + KE+E LRK+V LIK +++ +K++K +++KPW D +AK+ + L+
Sbjct: 61 GVEGESPAVMKEQENLRKKVTDLIKKQKLPAVRKIVKAKDDSKPWNADARAKVITILI 118
>gi|149940226|emb|CAJ13817.1| DNA-directed RNA polymerase 1 [Chrysanthemum x morifolium]
Length = 174
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 57/101 (56%)
Query: 168 REMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPL 227
R + + F L ++ + +D + M E++LAPNLP++K LFLGWF PL
Sbjct: 74 RHLVRHLFKYLHYKEKTAFPPNFVHSLDGSHMMMTDMCEQKLAPNLPYVKSLFLGWFEPL 133
Query: 228 SEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
AI EQ + + K + AYAP + LPAD + +I MHK+M
Sbjct: 134 KNAISGEQDLCKEGKNRGAYAPQFDQLPADMMTIITMHKLM 174
>gi|224114299|ref|XP_002332393.1| predicted protein [Populus trichocarpa]
gi|222832716|gb|EEE71193.1| predicted protein [Populus trichocarpa]
Length = 173
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKG 218
++R +L+ + RK +LRRRQVK E EAWE EYKEL M E LAPNLP++K
Sbjct: 85 FRRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHNLAPNLPYMKS 144
Query: 219 LFLGWFGPLSEAIERE 234
LFLGWF P ++AIE+E
Sbjct: 145 LFLGWFEPFTDAIEQE 160
>gi|242086118|ref|XP_002443484.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
gi|241944177|gb|EES17322.1| hypothetical protein SORBIDRAFT_08g020310 [Sorghum bicolor]
Length = 118
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR RQVK E EAWER +EY+E+E + +++RLA L K LF+GWF L E I ++ M
Sbjct: 16 LRLRQVKVEIEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETITCDRHM 75
Query: 238 QRTKKQKAAYA--PHIELLPADKVAVIVMHKMMGLVMAGHEDR 278
QR K+ K Y ++ LL ADKV VIVMHKMMGL+M+ +D+
Sbjct: 76 QRWKRVKHVYGLRQYLLLLLADKVVVIVMHKMMGLLMSTKDDK 118
>gi|227976922|gb|ACP44053.1| putative RNA polymerase [Vibrio phage 1032]
Length = 209
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 9/204 (4%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L + RR DE+ Y+P +D+R R Y HLN SD+ + +L + LGK GL WL
Sbjct: 2 LDLCRRFMDEDALYFPTCVDWRYRLY-FKSHLNPQGSDIQKALLLLGRKKKLGKRGLFWL 60
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQC-LAACI 690
K H+A F G +K + R+A+ + I + ++P+N D F C LAA I
Sbjct: 61 KSHVATCF--GFDKPLFEQRVAWTNERIDAIREWVKDPLNNED--FKDADEFWCMLAASI 116
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV--AGEKPADVYS 748
L EAL S P + S++ + D + +G QH++A+ R+ + NL AD+Y
Sbjct: 117 QLIEALDSGDPENYESNIAVALDATNSGGQHFSAMLRDPVGGKLTNLFWDGNLTKADLYM 176
Query: 749 EIAVRVHEIMKRDSNKDPSKHPQA 772
++ R +K + +DP QA
Sbjct: 177 DVKQRTDSKIKV-ALRDPETIVQA 199
>gi|224148781|ref|XP_002336713.1| predicted protein [Populus trichocarpa]
gi|222836570|gb|EEE74977.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 53/67 (79%)
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MR HG+++Q+EA+K+ ++ VFEALDTLG+T+WRVNK+VLSV + IW +GG +A LV
Sbjct: 1 MRIHGAKQQREAVKTAPRKQLQPVFEALDTLGNTRWRVNKRVLSVGDRIWSNGGCLADLV 60
Query: 526 DRNDVLI 532
D +DV I
Sbjct: 61 DHSDVSI 67
>gi|328751377|ref|YP_004347438.1| rnapol (mitochondrion) [Moniliophthora roreri]
gi|308912875|gb|ADO51620.1| rnapol (mitochondrion) [Moniliophthora roreri]
Length = 1041
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 99/421 (23%), Positives = 183/421 (43%), Gaps = 76/421 (18%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSY--------VMRTHGSRKQQEALKSVTGNCMKKVFEA 492
+PM+ PK W N GGYL L + ++R++ K Q +
Sbjct: 341 LPMITKPKIWSQDNIGGYL-LDEFNELNKNNEIVRSNHYLKNQSRVSETQE-------TT 392
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ L S + +N+ +LS L W N ++ ++ + K
Sbjct: 393 VNYLNSIPFEINETMLSYLIEEWNK---------ENSIIFKNYNKLHHLSAYENDKLDSE 443
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+I Q +S + +++A MK+ Y P LDFRGR YP +LN+ SD+ R
Sbjct: 444 TKIEIIQ-HNSLYWNYSNIINIALLMKNN-TIYLPTFLDFRGRIYPTPNYLNYQGSDIAR 501
Query: 613 GVLEF---------------------AEGRPLGK-SGLRWLKIHLANLFSGGVEKLSHDG 650
+L F ++ L K + + ++K++L+N++ G+ KL+
Sbjct: 502 SLLLFKNVGNKVNYDSTVNEILESFISKELILNKLNDIDYVKLYLSNVY--GLNKLNRRN 559
Query: 651 RLAFVENHLYEIFDSAENPIN--GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL 708
R+ + ++++ +I D N I ++++ A++P Q ++ ++ +K
Sbjct: 560 RIRWFDDNIDDILDLLNNNIKEFNDKYFIKAKEPAQFISTLFEYNKFIKKEIKEI---KT 616
Query: 709 PIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYS----EIAVRVHEIMKRDS 762
PI D +C+G+QH +AL + VNL+ K P+D Y+ I + + + DS
Sbjct: 617 PILFDATCSGVQHLSALTTDLDICKLVNLIEATKDEPSDFYNFCIKNILNNIENLPETDS 676
Query: 763 NKDPSKHPQALLAKILIDQVD--RKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD 820
L K I ++D RK++K ++MT Y VT +G ++I +K I+ D
Sbjct: 677 -----------LFKSKISKIDLSRKMLKHSIMTVPYNVTNIGIADKIAEYF-DKEFISKD 724
Query: 821 R 821
+
Sbjct: 725 K 725
>gi|2281469|gb|AAB64106.1| RNA polymerase [Ascosphaera aggregata]
Length = 441
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 626 SGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT--AEDPF 683
+ + + KI+ AN F ++KLS D R+ +V+ D+ ++ IN + L AE
Sbjct: 6 TAINYFKIYGANCFGNKIDKLSFDDRIKWVD-------DNIDDIINFKNFNLINKAESKL 58
Query: 684 QCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
+A C ++ L S ISHLPI D SCNG QH A L R+ A +N
Sbjct: 59 LFIAFCFEFNKFLNFLNDESSSYFISHLPIQLDASCNGFQHIAMLVRDGNLAKTLNFGIS 118
Query: 741 ---EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID-QVDRKLVKQTVMTSVY 796
P D YS IA + E N S + L D ++R ++K+ +MT Y
Sbjct: 119 YWDNIPDDFYSFIATHLKEFYDYALNSKSSDNKTIESIYRLKDLTINRAMIKKAIMTIPY 178
Query: 797 GVTFVGAREQIKRRLE 812
T V + +K +
Sbjct: 179 NATSVALIDYLKSDFD 194
>gi|11466092|ref|NP_052999.1| rna polymerase [Pleurotus ostreatus]
gi|5107017|gb|AAD39926.1|AF126285_2 RNA polymerase [Pleurotus ostreatus]
Length = 903
Score = 77.0 bits (188), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/401 (22%), Positives = 169/401 (42%), Gaps = 59/401 (14%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK 500
+PM+ PKKW GGYL + + S + K ++ L +
Sbjct: 273 LPMICEPKKWSENTTGGYLLSEFNELNKNISIVRDNPYMKEHSKISKDQISTVNYLNNIP 332
Query: 501 WRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE----KPLSEDMTEVQKWKWSVRKAKK 556
+ +N +L L W + N V+ E PLS+ E+ + K+
Sbjct: 333 FEINNTMLDYLLLEWK---------NTNSVIFKEYNKLHPLSK---ELDNNNLDSQMKKE 380
Query: 557 INQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
I + +S + L+++ M+ E+ Y P LDFRGR YP+ +L++ SD+ + +
Sbjct: 381 I-LKHNSIHWNYSNILNISALMR-EQTIYLPTFLDFRGRVYPIPVYLSYQGSDLAKIFII 438
Query: 617 FAE-GRPLGKSGL---------------------RWLKIHLANLFSGGVEKLSHDGRLAF 654
G + + + ++K++LAN+F G+ KL+ + R+ +
Sbjct: 439 IKNVGLKIDYNNIIQQIVDKNIKNKLKKLILNDIDYVKLYLANVF--GLNKLNRNNRIKW 496
Query: 655 VENHLYEIFD--SAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHL--PI 710
+++ E+ + +N I ++ A++P Q ++ + ++ ++IS + PI
Sbjct: 497 FNDNIKEMLYLLNNDNKIFNEKFLNKAKEPAQFISCLLGYNKY-----EENIISEIKRPI 551
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK--PADVYSEIAVRVHEIMKRDSNKDPSK 768
D +C+G+QH +AL + A VNL+ K P+D Y + I+ N
Sbjct: 552 LFDATCSGIQHLSALTSDIEIAKLVNLIESTKDEPSDFYE---FSITNIVNTIENFQIDS 608
Query: 769 HPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
H + L K + R +K ++MT Y V EQ +
Sbjct: 609 HLKIKLLK---LNLKRSFLKHSIMTVPYNVRADKLSEQFNK 646
>gi|224157115|ref|XP_002337803.1| predicted protein [Populus trichocarpa]
gi|222869831|gb|EEF06962.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 18/125 (14%)
Query: 295 QEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEET 354
++IRIH+ LEKT+ K+K+ D++ + E + K +L K + +++
Sbjct: 2 KQIRIHNILEKTR--KKKEKANDSKNGVEGESPAVMKEQENLRKKAK----------DDS 49
Query: 355 KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTK 414
KPW D +AK+GSRL+ELL++TAY+Q P + SP + RPAF H F+T+
Sbjct: 50 KPWNADARAKVGSRLIELLLQTAYIQPPCDQLADSPSEPRPAFVHTFRTV------SYEN 103
Query: 415 RYGVV 419
+YGV+
Sbjct: 104 KYGVI 108
>gi|1236334|gb|AAB01079.1| T3/T7-like RNA polymerase, partial [Oryza sativa Japonica Group]
Length = 167
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 42/48 (87%)
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
VKQTVMTSVYGVT++GAR+QI +RL+EKG ITDD+ L+ +CYA +V+
Sbjct: 1 VKQTVMTSVYGVTYIGARQQITKRLQEKGLITDDKLLYEVSCYATRVT 48
>gi|297738417|emb|CBI27618.3| unnamed protein product [Vitis vinifera]
Length = 50
Score = 74.7 bits (182), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
CINLS+AL+SS P + ISH+P+HQDGSCNGLQH+AALGR+ +
Sbjct: 2 CINLSDALRSSPPKTTISHMPVHQDGSCNGLQHHAALGRDKV 43
>gi|426386380|ref|XP_004059663.1| PREDICTED: DNA-directed RNA polymerase, mitochondrial-like, partial
[Gorilla gorilla gorilla]
Length = 818
Score = 74.3 bits (181), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 123/276 (44%), Gaps = 24/276 (8%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + + Q R+ ++ +N
Sbjct: 535 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSLHVVQRQRVSGQVQALQN 594
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ +L + + E +PW Q +LG
Sbjct: 595 HYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALRE----------QPWPLPVQMELGKL 644
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ Q P N D +P R +L H + ++ G+++ P ++
Sbjct: 645 LAEMLVQA--TQMPCN-LD------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 695
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 696 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 755
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
+ +AL LG+ WRVN +VL ++ ++ + G
Sbjct: 756 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKG 791
>gi|2370356|emb|CAA72339.1| RNA polymerase [Pichia kluyveri]
Length = 992
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 23/258 (8%)
Query: 574 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKI 633
+A+ K+ Y+P +DFRGR Y +++ S+D + +L+F E + + +L +
Sbjct: 438 MAKSFKNVSKMYFPLRVDFRGRVYA-QSVISYQSTDTAKALLDFGEVYKVNMDDVEYLFM 496
Query: 634 HLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI--- 690
AN + G++K SH R+ +++ + +++ E + TA++ + C+
Sbjct: 497 SGANAY--GLDKKSHMERINWIKTNSVLMYNLDEELMR------TADNKLLFVKFCLEYR 548
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK---PADVY 747
+AL S + S+ ++ D +CNG QH A ++ L VNL K P D Y
Sbjct: 549 KYMDALNSQQKY-YYSNYMVYVDATCNGFQHMALTLKDPLTCYNVNLANTSKDMSPRDFY 607
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ I V + MK D N + + + L L RK++K VM Y + +
Sbjct: 608 TFIKDSVLDNMK-DMNMNKNNSVERTLEMGLT----RKMMKTMVMIMPYNAGVTTMTKYL 662
Query: 808 KRRLEEKG--HITDDRQL 823
+ L G + D++ L
Sbjct: 663 EDSLNYMGTYYTADEKDL 680
>gi|224072667|ref|XP_002335917.1| predicted protein [Populus trichocarpa]
gi|222836347|gb|EEE74754.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 328 LLRKRVNSLIKSKRVMEAQKLLKN-EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPA 386
L RK+V LIK +++ +K++K +++KPW D +AK+GSRL+ELL++TAY+Q P +
Sbjct: 12 LSRKKVTDLIKKQKLPAVRKIVKGKDDSKPWNADARAKVGSRLIELLLQTAYIQPPCDQL 71
Query: 387 DYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVV 419
+ + RPAF H F+T+ +YGV+
Sbjct: 72 ADTSSEPRPAFVHTFRTV------SYENKYGVI 98
>gi|39935593|ref|NP_947869.1| DNA-dependent RNA polymerase [Rhodopseudomonas palustris CGA009]
gi|39649446|emb|CAE27968.1| possible DNA-dependent RNA polymerase [Rhodopseudomonas palustris
CGA009]
Length = 540
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 12/133 (9%)
Query: 675 WWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAA 734
+W A+ PF LAACI L+ AL + + LP DGSC+G QH A R+ +A
Sbjct: 8 FWTQADKPFLFLAACIELTNALAYGPGY--VCGLPCSWDGSCSGAQHLCAATRSE-DAWK 64
Query: 735 VNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVD-RKLVKQTVMT 793
VNL+ ++ D+Y+ + + M RD+ DP +++ IL + D RK+ K+ MT
Sbjct: 65 VNLIGNDEVHDLYTIVGNAAKQSMARDT--DP------MVSTILAYEGDWRKVFKRNTMT 116
Query: 794 SVYGVTFVGAREQ 806
+ YG G +Q
Sbjct: 117 TFYGSKGFGMAQQ 129
>gi|32455729|ref|NP_862328.1| hypothetical protein BrnaMpl_p6 [Brassica napus]
gi|23200585|dbj|BAC16369.1| orf6 [Brassica napus]
Length = 1078
Score = 70.5 bits (171), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 171/425 (40%), Gaps = 69/425 (16%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHG------SRKQQEALKSVTGNCMKKVF---- 490
+PM+ PP W K +P+Y+ G + + K +T + + +
Sbjct: 317 LPMISPPVDWYSIKKDNNPNVPTYMSDIKGGYLVGATGEFYNRFKLLTSKNIDRFYLSFR 376
Query: 491 -------EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDR---NDVLIPEKPLSED 540
E L L K+ +NK +L ++ ++ N+ L+D+ N + L ++
Sbjct: 377 KDPSNMLEILSFLQRQKFLINKSMLKFIKDNRLALENVDLLIDQCLANINTLAAYELLDE 436
Query: 541 MTEVQKWKWSVRKAKKI-----NQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGR 595
M K +++ ++ N + QR E + + Y P LDFRGR
Sbjct: 437 MFYRTDLKTNIKGYFRLDELKENLNKRIQRARYEEFIFQLADAYADYPLYLPAFLDFRGR 496
Query: 596 AYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK----IHLANLFS-----GGVEKL 646
Y GVL F E R L KS + + I+ N FS G+ L
Sbjct: 497 IYR-------------SGVLHFHE-RDLAKSLIIFSNSEKDINEINNFSENRIDSGIYNL 542
Query: 647 SHDGRLAFVENHLY-EIFDSAENPI-----NGSRWWLTAEDPFQCLAACINL----SEAL 696
+ + + Y E +D +N + N + A+DPFQ L+ + L SE
Sbjct: 543 AIATGFKYQKFSNYKESYDWIKNELIPNQSNILEFARNADDPFQFLSKALYLLYFISENE 602
Query: 697 KSSSPHS-----VISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG--EKPADVYSE 749
K +S +S +++ +P+ QD S + Q + L N N++ G +K D+YS
Sbjct: 603 KGTSFYSSDLRYLLNEIPVSQDASASAYQIMSFLLLNEDLGKGTNMIYGSEDKIQDLYSS 662
Query: 750 IAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKR 809
+ + E + + K + +PQ + Q+DRK VK+ M +YG T + IK
Sbjct: 663 LKDELVEYLLK--TKCSNDYPQC--EDFVKTQIDRKFVKRLFMPLIYGKTIMSMTNDIKL 718
Query: 810 RLEEK 814
E K
Sbjct: 719 YSERK 723
>gi|18250966|dbj|BAB83932.1| T7 phage-type RNA polymerase [Adiantum capillus-veneris]
Length = 164
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
VKQTVMTSVYGVT+VGAR QI RL+E+ I DD+Q F +CYAAK +
Sbjct: 1 VKQTVMTSVYGVTYVGARAQIMNRLQERPSINDDKQAFNLSCYAAKTT 48
>gi|331244154|ref|XP_003334718.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313708|gb|EFP90299.1| hypothetical protein PGTG_16325 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 179
Score = 65.9 bits (159), Expect = 9e-08, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
E FY L+ G+ P+ +LN + ++C G+L F E + LGK GL+WLKI+L+N +
Sbjct: 47 EKFY--KALEKLGQVVPIPENLNQIGDNICWGLLNFVEKKELGKDGLQWLKINLSNNY-- 102
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
G K S D F+E L + DSA+ P+ G+
Sbjct: 103 GNNKASLDDWAKFIEEQLELVIDSADQPLEGN 134
>gi|361129190|gb|EHL01103.1| putative DNA-directed RNA polymerase, mitochondrial [Glarea
lozoyensis 74030]
Length = 484
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 35/227 (15%)
Query: 292 AIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKR-VNSLIKSKRVMEAQKLLK 350
AIE E S LE+ K KR + + ++ + K++++ R SL K +++ +
Sbjct: 278 AIEDE----SVLERVKRQKRSPLTSRSQIGVYDLKKMVKNRGAGSLSKLLSATDSKHPMA 333
Query: 351 NEETK-----PWGRDTQAKLGSRLVELLIETAYVQHPVNPA--DYSPPDVRPAFRHRFKT 403
++ PW +AK+G+ ++ LI+ A + P+ + + +++PA H +K
Sbjct: 334 KRASQYSMELPWPTAVRAKVGAYVLSALIDIATMPVPIQNSVTKETMTEMQPALLHSYK- 392
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPS 463
KH ++YG++ + E L +S K + P W + +GGYL P+
Sbjct: 393 -YKH-----GRKYGIIMAN----EALTQSLK----------LEPDPWMSFAEGGYLIHPT 432
Query: 464 YVMRTHGSRKQQE--ALKSVTGNCMKKVFEALDTLGSTKWRVNKQVL 508
++R K Q A ++ + ++ E LD LG T+WR+N+ V
Sbjct: 433 KLIRVKSGNKDQRYYAEAAIAQGDLDRLREGLDVLGKTEWRINRPVF 479
>gi|15147309|ref|NP_150313.1| orf218 [Spizellomyces punctatus]
gi|15100078|gb|AAK84242.1|AF404303_16 orf218 [Spizellomyces punctatus]
Length = 218
Score = 63.5 bits (153), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
E Y P D+RGR YP +N+ + + R VLEF G L +G+ I+ AN +
Sbjct: 20 EPIYLPVFGDWRGRVYPHSTFINYQGNSLSRNVLEFYHGEVLNSNGIFSFFIYGANTY-- 77
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA--ACINLSEALKSS 699
G++KL+ D R +V D++ ++ R +L D A A +
Sbjct: 78 GLDKLTFDERYQWV-------IDNSAKILSMDRDFLLGADDQLAFASFALYYRKWYINPD 130
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA-DVYSEIA 751
P +VI ++QD +C+GLQH ++L + A VN A DVY+++A
Sbjct: 131 EPLNVI----VYQDATCSGLQHISSLLADINLAKQVNTAGPSAIAGDVYTDVA 179
>gi|452849733|ref|YP_007475378.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|452849745|ref|YP_007475390.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067451|gb|AGE14592.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
gi|445067463|gb|AGE14604.1| hypothetical protein (mitochondrion) [Microbotryum
lychnidis-dioicae]
Length = 266
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 31/194 (15%)
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPE--KPLSEDMTEVQKWK 548
+ ++ L K ++++VL L S W SG R+D L E KP+ D
Sbjct: 86 DCVNYLNRQKLVIHEEVLDFLISEWESG--------RSDTLFKEYIKPMPSD-------- 129
Query: 549 WSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSS 608
+ A K N + + LS+A + FY P DFRGR Y L++
Sbjct: 130 -NGNDAIKHNAIHYRYQS----ILSLASNFRKLPYFYLPVFGDFRGRLYTFCSLLSYQGQ 184
Query: 609 DVCRGVLEFA-EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAE 667
D+ RG++ F E + GL ++ ++AN F G +KLSHD +++F E+ + E D E
Sbjct: 185 DLSRGLIGFYNESEEINSEGLCYVYHYMANTF--GNDKLSHDNKVSFSESIIKECLDLYE 242
Query: 668 NPINGSRW---WLT 678
N + +W WL
Sbjct: 243 N--DKEKWKNLWLN 254
>gi|195159574|ref|XP_002020653.1| GL15084 [Drosophila persimilis]
gi|194117603|gb|EDW39646.1| GL15084 [Drosophila persimilis]
Length = 1427
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 356 PWGRDTQAKLGSRLVELL-----IETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ 410
PW + A +G L +L I+ ++ S ++ PAF T+ ++ G+
Sbjct: 682 PWPSNVLAGVGRFLYNILMRDIKIDPHIMRQKSKSKTTSSQNLLPAFY----TLFRNQGR 737
Query: 411 KTTKRYGVVECDPLVLEGLDRSAKHMLIPY----VPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ V+ P VL L R ++ + + VPML PP+ W + GGYL S ++
Sbjct: 738 LVKEE---VKPHP-VLSRLLRGSRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKSELI 793
Query: 467 RT-HGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGN 520
R H + +Q E +++ + ++L+ L S WRVN Q+L V+ ++ +GG+
Sbjct: 794 RLPHQAIQQWERIRASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIEVFQNGGD 848
>gi|392973304|ref|YP_006489261.1| RNA polymerase [Colwellia phage 9A]
gi|388549474|gb|AFK66671.1| RNA polymerase [Colwellia phage 9A]
Length = 878
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP-MHPHLNHLSSDV 610
RK K + +R + C +++ + + Y+ ++LD R R YP +N SD
Sbjct: 327 RKEAKKSLDRSYKTC-----MTLVSELDKYDEIYWAYSLDRRSRVYPSAMTGINLQGSDY 381
Query: 611 CRGVLEFAEGRPL-----GKSG----LRWLKIHLANLFSGGV--EKLSHDGR------LA 653
+ +EFA G PL G+ G ++ + H N GV +KL+ + L+
Sbjct: 382 QKANVEFAVGLPLDFDGDGEGGEYAIIKTMCNHWGNDSGNGVKTDKLTREQAQNWLHGLS 441
Query: 654 FVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHS---VISHLPI 710
+ I + A +P+ S+ W+ A+ P Q LAA + + H+ +SHL
Sbjct: 442 GYKGSESWILECANDPLE-SKAWMKADKPLQFLAAILEWKDWKAYRVLHNDYKFVSHLCD 500
Query: 711 HQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA-DVYSEIAVRVHE 756
D SC+G Q +A+ R+ + A NL+ P D+Y +A +V E
Sbjct: 501 PNDASCSGAQILSAMTRDMVGAMHTNLL--NMPVQDLYMAVARKVSE 545
>gi|413947445|gb|AFW80094.1| hypothetical protein ZEAMMB73_281983 [Zea mays]
Length = 277
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 385 PADYSPPDVRPAFRHRF-KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPM 443
PAD +P P F+H K I+++ + K++ V+ D LV EG + +A+H+ IPY+PM
Sbjct: 183 PADQTPDSSPPTFKHVLCKPIIEN--GRLKKKHWVI--DHLVHEGFESTARHVDIPYLPM 238
Query: 444 LVPPKKWKGYNKG 456
LVPPKKWKG G
Sbjct: 239 LVPPKKWKGVLHG 251
>gi|94502567|ref|YP_588388.1| hypothetical protein ZeamMp138 [Zea mays subsp. mays]
gi|40795006|gb|AAR91050.1| hypothetical protein (mitochondrion) [Zea mays]
gi|414871177|tpg|DAA49734.1| TPA: DNA-directed RNA polymerase [Zea mays]
Length = 417
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 141/331 (42%), Gaps = 48/331 (14%)
Query: 492 ALDTLGSTKWRVNKQVLSVL---ESIWVSGG----NIAGLVDRNDVLIPEKPLSEDMTEV 544
++ L S +++N ++L L + I+ + G +I +DR + + K + E+
Sbjct: 13 VINKLQSVPYQINTKLLCHLVKCKDIYHASGLLMPSILASIDRTEGTVRLKHHYLNDKEM 72
Query: 545 QKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAY---PMHP 601
+K+ +S++ I + C + L +A +++ Y+P LDFRGR Y P H
Sbjct: 73 KKY-FSLKDLINIWIKNIQSACYEQYILKLADALQNY-NLYFPTFLDFRGRNYRYGPFHY 130
Query: 602 HLNHLSSDVCRGVLEFAEGRPL------GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFV 655
H D+ R ++ FA+ G G+R A +S K ++G + F+
Sbjct: 131 H----ERDLVRSLILFAQSGVTDTPPDKGSQGIRTFMASTAFHYS-KYWKNYNEGIIWFI 185
Query: 656 ENHLYEIFDSAENP--------INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707
+N ++E D N N +R A PFQ L++ I L + I+
Sbjct: 186 KN-IHECPDLNSNKADIVLDRLANLAR---KARHPFQFLSSVITL-----KNRDSDKIAR 236
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD-P 766
PIH D S + Q + L N A NL++ + ++EI+ D K
Sbjct: 237 TPIHLDASASAYQMLSYLLGNITMARNTNLISENNKIN-------NIYEIIDSDFKKYIE 289
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
K+ + ++ + + DR ++K M VYG
Sbjct: 290 RKYGEHIITRYVCSLFDRDIIKNIFMPIVYG 320
>gi|238566639|ref|XP_002386099.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
gi|215437037|gb|EEB87029.1| hypothetical protein MPER_15811 [Moniliophthora perniciosa FA553]
Length = 49
Score = 58.9 bits (141), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Query: 621 RPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPI 670
+PLG GLRWLKIHLANL+ G +K S R+ +++ L +IFDSA NP+
Sbjct: 1 KPLGARGLRWLKIHLANLY--GYDKASFSERVEYIDARLEQIFDSATNPL 48
>gi|313244254|emb|CBY15078.1| unnamed protein product [Oikopleura dioica]
Length = 808
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 13/197 (6%)
Query: 441 VPMLVPPKKWKGYN---KGGYLFLPSYVMRTHGSR-------KQQEALKSVTGNCMKKVF 490
+PML PP+ +K ++ KG +L P +++ R ++ + + +
Sbjct: 601 MPMLCPPRPYKIFDNQIKGQFLTSPRLLVKKKKMRNPKPFHIEESPGWRQYPKEKINHML 660
Query: 491 EALDTLGSTKWRVNKQVLSVLESIWVSGGNIA---GLVDRNDVLIPEKPLSEDMTEVQKW 547
A + + W +NK+++ VLE + GG + D D+ K + T +
Sbjct: 661 TACNAISQQSWSINKEIVKVLEEVTKEGGMYTLKIPMRDCWDISHGIKSIVTTSTSDPLY 720
Query: 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLS 607
+ ++ E + L + + + F+ P +LD+RGR YP +N LS
Sbjct: 721 NRHKQVETRLRVEEKGLYVTFQSHLGLVKYFSQFDEFWLPLDLDYRGRIYPTTAIMNPLS 780
Query: 608 SDVCRGVLEFAEGRPLG 624
SD R F + + LG
Sbjct: 781 SDPYRASFLFGKAKKLG 797
>gi|242092660|ref|XP_002436820.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
gi|241915043|gb|EER88187.1| hypothetical protein SORBIDRAFT_10g009430 [Sorghum bicolor]
Length = 115
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKM 237
LR RQVK ETEAWER +EY+E+E + +++RLA L K LF+GWF L E I ++ +
Sbjct: 16 LRLRQVKAETEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETITCDRHV 75
Query: 238 QRTKKQKAAYAPHIELLPA 256
QR K+ K Y + +PA
Sbjct: 76 QRWKRVKHVYG--LRQVPA 92
>gi|4206729|gb|AAD11787.1| RNA polymerase [Agaricus crocodilinus]
Length = 246
Score = 53.9 bits (128), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVA- 739
+PFQ ++ I ++ L S+P + IS+ PI D SC+G+QH AAL A+ VNL
Sbjct: 9 EPFQFIS--IMYAKLLSMSNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNLYTD 65
Query: 740 GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVT 799
KP D Y + + K +K Q+ ++++ Q++RK++K++VMT Y ++
Sbjct: 66 SSKPKDEYPQ------DFYMYALGKIRAKLIQSEISELRDIQLNRKIIKRSVMTIPYNIS 119
Query: 800 FVGAREQI 807
G E +
Sbjct: 120 MSGIGEHL 127
>gi|302832495|ref|XP_002947812.1| hypothetical protein VOLCADRAFT_47196 [Volvox carteri f.
nagariensis]
gi|300267160|gb|EFJ51345.1| hypothetical protein VOLCADRAFT_47196 [Volvox carteri f.
nagariensis]
Length = 169
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKV 833
VKQTVMT VYGVT +GAREQI+ RLEE+G T++R+ A Y +++
Sbjct: 1 VKQTVMTYVYGVTMMGAREQIENRLEERGW-TNERERRKVASYLSRI 46
>gi|1236344|gb|AAB01084.1| RNA polymerase, partial [Naegleria fowleri]
Length = 123
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
SVYGVTFVGAREQI++RL+EK + +D +FA A Y A ++
Sbjct: 1 SVYGVTFVGAREQIQKRLKEKKEVPED-DVFACASYLASIT 40
>gi|42411057|gb|AAS15052.1| DNA-directed RNA polymerase [Daucus carota]
Length = 999
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 51/254 (20%)
Query: 570 LKLSVARRMKDEEG--FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627
LKL++A EG FY P LDFRGR Y G+L F E R L +S
Sbjct: 497 LKLAIAY-----EGYHFYLPAFLDFRGRIYR-------------SGILHFHE-RDLARSL 537
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAF--VENHLYEIFDSAENPIN------GS------ 673
+ +F+ ++S ++F +HLY FD+ ++ + G+
Sbjct: 538 V---------IFAKEDSQVSSSIPISFYCAASHLYRSFDNNDDAVEWFEEAKGTFEEAPN 588
Query: 674 ----RWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
++ A+ P Q L +C+ + + ++ I+ PI QD S + Q + +
Sbjct: 589 DLLIKFACDAKKPLQFL-SCVVVFKEYSTTQDLQAITSYPITQDASASAYQLMSYFLLDK 647
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
A NL+ +++ + + E+ ++ D K+ +L + D + RK+VK
Sbjct: 648 DLAKNTNLIQRPGDSNIQDIYSYLLKEVQVYINDNDKYKNDSLILT--VSDNLTRKIVKG 705
Query: 790 TVMTSVYGVTFVGA 803
M +YG T +
Sbjct: 706 IFMPMIYGKTLMST 719
>gi|15147299|ref|NP_150303.1| orf181 [Spizellomyces punctatus]
gi|15100068|gb|AAK84232.1|AF404303_6 orf181 [Spizellomyces punctatus]
Length = 181
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 25/129 (19%)
Query: 705 ISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK---------PADVYSEIAVRVH 755
I HLP + D +C+G QH + + R+ + A VN++ E P D YS I ++
Sbjct: 6 IVHLPCYVDATCSGTQHISVIMRDAVLAKMVNVIECEDDAPYHGDRIPKDFYSSIIPFIN 65
Query: 756 E-IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEK 814
E I D++ HP L + R LVK+ VMT Y V+ G +Q L E+
Sbjct: 66 EAIQALDAD-----HPLRYLP------ITRALVKRPVMTIPYNVSLKGIADQ----LMEQ 110
Query: 815 GHITDDRQL 823
G D+ L
Sbjct: 111 GVEAKDKDL 119
>gi|291335799|gb|ADD95399.1| DNA directed RNA polymerase 2A [uncultured phage
MedDCM-OCT-S05-C849]
Length = 256
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 32/124 (25%)
Query: 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPS 767
+P+ D +C+GLQ A L R+ AA VN++ +KP D Y IA +
Sbjct: 9 IPVATDATCSGLQILAGLARDKSTAAMVNVIPSDKPQDAYKVIAEKC------------- 55
Query: 768 KHPQALLAKILIDQV--------DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD 819
IDQ+ DRK K+T +T Y R+ IK L++K D
Sbjct: 56 -----------IDQIPERIRPYWDRKCTKRTCLTIPYNAKPFSNRQYIKDALKDKDIEVD 104
Query: 820 DRQL 823
+L
Sbjct: 105 KDEL 108
>gi|167588939|ref|ZP_02381327.1| DNA-dependent RNA polymerase [Burkholderia ubonensis Bu]
Length = 246
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
+R W+ A+ P+Q LAAC A + S L DGSC+G+Q A + R+
Sbjct: 34 NREWMKADKPWQFLAACFEW--AGYQEEGEAFRSRLAGALDGSCSGVQMLAGMTRDASAG 91
Query: 733 AAVNLVAGEKPADVYSEIA 751
A VN V+ E+ D Y +A
Sbjct: 92 AMVNFVSSERGDDYYGRMA 110
>gi|1236332|gb|AAB01078.1| T3/T7-like RNA polymerase, partial [Isochrysis sp.]
Length = 161
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 4/45 (8%)
Query: 794 SVYGVTFVGAREQIKRRLEE----KGHITDDRQLFAAACYAAKVS 834
+VYGVTFVGAR+QI+RRL E K I DDR+ A Y A+++
Sbjct: 1 TVYGVTFVGARDQIERRLRELPELKAEIADDRRFTELATYCARLT 45
>gi|89148160|gb|ABD62823.1| mitochondrial single-subunit RNA polymerase [Naegleria gruberi]
Length = 66
Score = 48.1 bits (113), Expect = 0.021, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 723 AALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV 782
AALGR+ L A VNL+ KP DVY V V E++K+ +D + LAK+L V
Sbjct: 1 AALGRDNLGALHVNLLPTSKPMDVY----VGVLEVVKKHIERDMKAGNK--LAKLLHGNV 54
Query: 783 DRKLVKQTVMTS 794
R +KQTVMTS
Sbjct: 55 YRSTIKQTVMTS 66
>gi|297738415|emb|CBI27616.3| unnamed protein product [Vitis vinifera]
Length = 30
Score = 47.8 bits (112), Expect = 0.029, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 22/23 (95%)
Query: 708 LPIHQDGSCNGLQHYAALGRNTL 730
+P+HQDGSCNGLQH+AALGR+ +
Sbjct: 1 MPVHQDGSCNGLQHHAALGRDKV 23
>gi|4206725|gb|AAD11786.1| RNA polymerase [Agaricus subrutilescens]
Length = 246
Score = 47.0 bits (110), Expect = 0.042, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 20/133 (15%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
+PFQ ++ I ++ L S+P + IS+ PI D SC+G+QH AAL A+ VN+
Sbjct: 9 EPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNVYTD 65
Query: 741 ------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
+ P D Y+ ++ + K + + ++ Q++RK++K++VMT
Sbjct: 66 SSNPKEDYPQDFYTYALEKIRD-----------KLINSEITELRDIQLNRKIIKRSVMTI 114
Query: 795 VYGVTFVGAREQI 807
Y ++ G E +
Sbjct: 115 PYNISMAGIGEHL 127
>gi|1236340|gb|AAB01082.1| RNA polymerase, partial [Acanthamoeba castellanii]
Length = 157
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAA 831
SVYGVTF+GAR+QI+ L++KG ++DD +F A+ Y A
Sbjct: 1 SVYGVTFIGARQQIENALKDKGKVSDD-DMFLASRYLA 37
>gi|300120042|emb|CBK19596.2| DNA-directed RNA polymerase [Blastocystis hominis]
Length = 276
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQ-K 236
L +RQ++ E A + V +Y+ ++A++ + +L + L WF PLS AI EQ
Sbjct: 94 LLKRQLELEENAIDLAVQKYQAMKAEVEKIGQGVSLRPAQILLADWFDPLSTAIREEQLN 153
Query: 237 MQRTKKQKAAYA-----PHIELLPADKVAVIVMHKMMGLVM 272
++ + + K A + P++ LL +K+++IV+H+++ ++M
Sbjct: 154 IKYSSQGKGAISEKAIQPYLLLLKPEKISIIVLHELVHILM 194
>gi|4206723|gb|AAD11785.1| RNA polymerase [Agaricus bitorquis]
Length = 246
Score = 46.6 bits (109), Expect = 0.057, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 20/133 (15%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
+PFQ ++ I ++ L S+P + IS+ PI D SC+G+QH AAL A+ VNL
Sbjct: 9 EPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAALTLEKELASNVNLYTD 65
Query: 741 ------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTS 794
+ P D Y+ ++ + K + + ++ +++RK++K++VMT
Sbjct: 66 SSNPKEDYPQDFYTYALEKIRD-----------KLINSEITELRDIKLNRKIIKRSVMTI 114
Query: 795 VYGVTFVGAREQI 807
Y ++ G E +
Sbjct: 115 PYNISMAGIGEHL 127
>gi|224116180|ref|XP_002331981.1| predicted protein [Populus trichocarpa]
gi|222832105|gb|EEE70582.1| predicted protein [Populus trichocarpa]
Length = 187
Score = 46.2 bits (108), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 270 LVMAGHEDRCVQVVQAAVHIGMAIEQE-------IRIHSFLEKTKNYKR-----KKIIAD 317
+VM G E C +VV AA IG AIEQE IRIH+ LEKT+ K K +
Sbjct: 1 MVMTGGEHGCARVVTAACMIGDAIEQEIFSVMKQIRIHNILEKTRKKKERADDSKNGVEG 60
Query: 318 TEEVLSKEKELLRKR 332
+ KE+E LRK+
Sbjct: 61 ESPAVMKEQENLRKK 75
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 433 AKHMLIPYVPMLVPPKKWKG 452
A+HM+IPY+PMLVPP +W+G
Sbjct: 91 ARHMVIPYMPMLVPPLRWRG 110
>gi|416251162|ref|ZP_11637570.1| hypothetical protein E9W_06926 [Moraxella catarrhalis CO72]
gi|326573163|gb|EGE23132.1| hypothetical protein E9W_06926 [Moraxella catarrhalis CO72]
Length = 402
Score = 46.2 bits (108), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 35/172 (20%)
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLA 687
+++L I +AN F G++KL+++ R+ +V+ ++ + + E AE+P
Sbjct: 7 MQYLAIDIANHF--GLDKLNYEERIDWVKTNINSLENMTEQ----------AEEPILFAK 54
Query: 688 ACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVY 747
A AL+ + H + D +C+GLQ + L + L+ K +D Y
Sbjct: 55 AV----HALRQTQQGIPTGH-TVAFDATCSGLQLMSLLTNCKSGMSLTGLIDPNKRSDAY 109
Query: 748 SEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVYG 797
++I ++ ++K+D ID +V RK KQ +MTS+YG
Sbjct: 110 TQITEYINYLLKQDG----------------IDSVEVSRKDAKQAIMTSLYG 145
>gi|416239277|ref|ZP_11631827.1| hypothetical protein E9Q_06158 [Moraxella catarrhalis BC1]
gi|326567465|gb|EGE17580.1| hypothetical protein E9Q_06158 [Moraxella catarrhalis BC1]
Length = 402
Score = 46.2 bits (108), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 41/175 (23%)
Query: 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVE---NHLYEIFDSAENPINGSRWWLTAEDPFQ 684
+++L I +AN F G++KL+++ R+ +V+ N L + + AE PI L A+ +
Sbjct: 7 MQYLAIDIANHF--GLDKLNYEERIDWVKTNINSLENMTEQAEEPI------LFAKAVY- 57
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
AL+ + H + D +C+GLQ + L + L+ K +
Sbjct: 58 ----------ALRQTQQGIPTGH-TVAFDATCSGLQLMSLLTNCKSGMSLTGLIDPNKRS 106
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID--QVDRKLVKQTVMTSVYG 797
D Y++I ++ ++K+D ID +V RK KQ +MTS+YG
Sbjct: 107 DAYTQITEYINYLLKQDG----------------IDSVEVSRKDAKQAIMTSLYG 145
>gi|188032261|emb|CAQ52964.1| unnamed protein product [Lolium perenne]
Length = 1284
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 103/268 (38%), Gaps = 56/268 (20%)
Query: 584 FYYPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
FY P LDFRGR Y H H D R + FA P + ++ + +
Sbjct: 696 FYLPLFLDFRGRNYRRGVFHLH----ERDFMRSLFLFAT--PNNR-----IQAKMNDFTK 744
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT---------------------- 678
E+L+ D F + + P + + W+ T
Sbjct: 745 KEEEELTQDQLDCFYAATSFHFHKWMDYP-SATEWFRTKLEKWDKGKPLSNENFTEDTDI 803
Query: 679 ------AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
A+ PFQ LA C A ++ ++ + H+PI QD S + Q + +
Sbjct: 804 LSLLNQAKSPFQFLAGC----HAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMG 858
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV-DRKLVKQTV 791
NL+ + D+Y + +H+ ++ + P + + A +I+ V DRK++K
Sbjct: 859 MHTNLIGSNEINDIYDCL---LHQ-LRCYTTTIPIQENVDMHALNIINTVFDRKIMKNIY 914
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITD 819
M +YG T R+ +++ GH D
Sbjct: 915 MPIIYGKTKNSTRDDFIKKI---GHNRD 939
>gi|116073358|ref|ZP_01470620.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
gi|116068663|gb|EAU74415.1| DNA-directed RNA polymerase [Synechococcus sp. RS9916]
Length = 193
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L +A R + + P D R R M LN SD + +L FA + + +R +
Sbjct: 39 LMMAARFRPIDHCDLPTYFDSRLRMSYMCDTLNPQGSDYQKALLHFANSVQVTEENIREV 98
Query: 632 K----IHLANLFSGGVE-------KLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAE 680
+ I LAN + +E K S +GR+A+ + ++ D AE P ++W +
Sbjct: 99 QKDLLITLAN--AAAIETPAVKTDKPSMEGRMAWELEMVTKLKDEAEYPAVNRKFWTECD 156
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+PFQ LAA E S ++ +P +D + +G
Sbjct: 157 EPFQFLAALREYYEIFVWCC--STVARVPNGRDATNSG 192
>gi|188032269|emb|CAQ52970.1| unnamed protein product [Lolium perenne]
Length = 1272
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 56/268 (20%)
Query: 584 FYYPHNLDFRGRAY---PMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS 640
FY P LDFRGR Y H H D R + FA P + ++ + +
Sbjct: 684 FYLPLFLDFRGRNYRRGVFHLH----ERDFMRSLFLFAT--PNNR-----IQAKMNDFTK 732
Query: 641 GGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT---------------------- 678
E+L+ D F + + + P + + W+ T
Sbjct: 733 KEEEELTQDQLDCFYAATSFHLHKWKDYP-SATEWFRTKLEKWDKGKPLSNKNFTEDTDI 791
Query: 679 ------AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
A+ PFQ LA C A ++ ++ + H+PI QD S + Q + +
Sbjct: 792 LSLLNQAKSPFQFLAGC----HAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMG 846
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQV-DRKLVKQTV 791
NL+ + D+Y + +H+ ++ + P + + A +I+ V DRK++K
Sbjct: 847 MHTNLIGSNEINDIYDCL---LHQ-LRCYTTTIPIQANVDMHALNIINTVFDRKIMKNIY 902
Query: 792 MTSVYGVTFVGAREQIKRRLEEKGHITD 819
M +YG T R+ +++ GH D
Sbjct: 903 MPIIYGKTKKSTRDDFIKKI---GHNRD 927
>gi|188032265|emb|CAQ52967.1| unnamed protein product [Lolium perenne]
Length = 1272
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV 738
A+ PFQ LA C +A ++ ++ + H+PI QD S + Q + + NL+
Sbjct: 798 AKSPFQFLAGC----QAARTKDTYT-MKHIPITQDASASAYQILSFFFLDLRMGMHTNLI 852
Query: 739 AGEKPADVYSEIAVRVHEIMKRDSNKDP-SKHPQALLAKILIDQVDRKLVKQTVMTSVYG 797
+ D+Y + ++ N++ KH ++ + DRK++K M +YG
Sbjct: 853 GSNEINDIYDCLLHQLRYYSTTIPNQENVDKHALNIINTVF----DRKIMKNIYMPIIYG 908
Query: 798 VTFVGAREQIKRRLEEKGHITD 819
T R+ +++ GH D
Sbjct: 909 KTKKSTRDDFIKKI---GHDRD 927
>gi|357624513|gb|EHJ75257.1| hypothetical protein KGM_01416 [Danaus plexippus]
Length = 296
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
A +L V RK++KQTVMT+VYGVT GAR QI ++L++
Sbjct: 13 AMVLEGFVRRKVIKQTVMTTVYGVTRFGARLQIAKQLKD 51
>gi|148271498|ref|YP_001221059.1| hypothetical protein CMM_0319 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829428|emb|CAN00341.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 221
Score = 41.2 bits (95), Expect = 2.7, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 338 KSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN-PADYSPPDVRPA 396
+ +R+ A+ L + + PW R A L SRLVE ++ V+ P+ DY V PA
Sbjct: 87 RERRMSPAKTLAEFDRVAPWTRTPPAALASRLVEAVVHAEDVRRPLGVRRDYPLGHVLPA 146
Query: 397 FRHRFKT 403
H+ +T
Sbjct: 147 LTHQLRT 153
>gi|266634773|gb|ACY78115.1| putative DNA-dependent RNA polymerase [Acinetobacter phage phiAB2]
Length = 263
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 432 SAKHMLIPYVPMLVPPKKWKGYNKGGYLF------LPSYVMRTHGSRKQQEALKSVTGNC 485
SA ++ Y PML+ P W+G GGYL P +R + + ++ N
Sbjct: 138 SAARAVVKYPPMLIQPMDWEGQYNGGYLTEWFKHNSPMCGIRFIKKEHKHWVIDNLN-NG 196
Query: 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSED 540
+ V A++ S +R+NK +L++L I GL P P +ED
Sbjct: 197 AELVKAAMNKAQSVPYRINKDILAILRKAVAIRVGILGLPSYQPAPKPAFPFTED 251
>gi|1236348|gb|AAB01086.1| RNA polymerase, partial [Tetrahymena pyriformis]
Length = 155
Score = 40.4 bits (93), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 794 SVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
SVYGVTFVGAR+QI ++L +K +T++ + A+ Y A+ +
Sbjct: 1 SVYGVTFVGARKQIYKQLRDKDFLTEEES-YEASYYLAQTT 40
>gi|402585201|gb|EJW79141.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 654
Score = 40.0 bits (92), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 21/169 (12%)
Query: 357 WGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRY 416
+G + +LGS L +++E Q + D P F +K ++ +
Sbjct: 458 FGSGIREQLGSFLTSVVLEAC--QAHIKTGDRGKTLSIPVFS--YKDVVNEESSFDGEVL 513
Query: 417 GVVECDPLVLEGLDRSAKH-------MLIPYVPMLVPPKKWKGYNKGGYLFLPSY-VMRT 468
V + + ++ KH +LI + LVPP+ W +GG + S+ V+R
Sbjct: 514 CVTKMIKICSAMMEVVCKHQFEWMVFLLIYCLWKLVPPRPWLDSGEGGPYYGSSFNVLRP 573
Query: 469 HG-------SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSV 510
H + + ++ LKS + VF+AL+ LG T W++N+ VL V
Sbjct: 574 HPDYSMINVNYEMKKRLKSRKQ--ARPVFDALNDLGITPWKINEPVLDV 620
>gi|224171355|ref|XP_002339484.1| predicted protein [Populus trichocarpa]
gi|222875221|gb|EEF12352.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 40.0 bits (92), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 159 YKRIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKM 204
+ R +L+ + RK +LRRRQVK E EAWE EYKEL M
Sbjct: 64 FSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDM 109
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,692,509,064
Number of Sequences: 23463169
Number of extensions: 527847756
Number of successful extensions: 1733297
Number of sequences better than 100.0: 821
Number of HSP's better than 100.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1728608
Number of HSP's gapped (non-prelim): 1423
length of query: 835
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 684
effective length of database: 8,816,256,848
effective search space: 6030319684032
effective search space used: 6030319684032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)