BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003263
(835 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis
thaliana GN=RPOT3 PE=2 SV=1
Length = 993
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/750 (72%), Positives = 626/750 (83%), Gaps = 13/750 (1%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I NSV FH E +N T A L I EN L RRR+F+QDPPW
Sbjct: 74 ISNSVHFHGNLIESFENQDSSYAGTIKGASL-IEELENPVERN--GLSGRRRLFMQDPPW 130
Query: 150 FSSIFLKGLYKRIKLQ---EYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIE 206
S++FLKGL K + E +++ KRKF+ LRRRQVK+ETEAWERMVDEY++LE +M E
Sbjct: 131 ISALFLKGLSKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCE 190
Query: 207 KRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQKAAYAPHIELLPADKVAVIVM 264
K LAPNLP++K +FLGWF PL + IEREQK+Q+ +KK +AAYAPHIELLPADK+AVIVM
Sbjct: 191 KNLAPNLPYVKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVM 250
Query: 265 HKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK 324
HKMMGLVM+GHED C+QVVQAAV IG+AIEQE+RIH+FL++T RK D++E L K
Sbjct: 251 HKMMGLVMSGHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRT----RKNNAGDSQEEL-K 305
Query: 325 EKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384
EK+LLRKRVNSLI+ KR+++A K++K+E TKPWGR TQAKLGSRL+ELLIE AYVQ P+
Sbjct: 306 EKQLLRKRVNSLIRRKRIIDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPML 444
+ S P+ RPAFRHRFKT+ K+PG K +RYGV+ECD L+L GLD+SAKHMLIPYVPML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 445 VPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVN 504
VPPK+WKGY+KGGYLFLPSY+MRTHGS+KQQ+ALK ++ +VFEALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 505 KQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564
+ +L V+E +W GGNIAGLV+R DV IPEKP SED E+Q WKWS RKA KIN+ERHS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLG 624
RCD ELKLSVAR+MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG LEFAEGRPLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 625 KSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQ 684
KSGL WLKIHLANL++GGVEKLSHD RLAFVENHL +I DSAENPI+G RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 685 CLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPA 744
CLAAC+ L++ALKS SP+SVISHLPIHQDGSCNGLQHYAALGR++ EAAAVNLVAGEKPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 745 DVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAR 804
DVYSEI+ RVHEIMK+DS+KDP +P A LAKILI QVDRKLVKQTVMTSVYGVT+VGAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 805 EQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
EQIKRRLEEKG ITD+R LFAAACY+AKV+
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVT 815
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana
sylvestris GN=RPOT3 PE=2 SV=1
Length = 977
Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/752 (67%), Positives = 616/752 (81%), Gaps = 20/752 (2%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LGKSGLRWLKIHLA+L++GG+EKL +D RLAFVENH+ +I DSA NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
AREQIKRRLEEKG I DDR LF A+CYAAKV+
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 799
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/752 (67%), Positives = 616/752 (81%), Gaps = 20/752 (2%)
Query: 90 IENSVDFHIPTCEQEQNFHQRVENTETCADLVIPRSENSTNHQLMCLEPRRRIFVQDPPW 149
I N++ C + + N + A+ V+ + N +R+F+QDPPW
Sbjct: 61 INNNIQSQTTVCVSTDENLEELVNLQKIANGVLTKESN------------KRVFIQDPPW 108
Query: 150 FSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAK 203
SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAWE+MV+EY+ELE +
Sbjct: 109 VSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELERE 168
Query: 204 MIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIV 263
M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APHI+ LPADK+AVIV
Sbjct: 169 MCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIV 228
Query: 264 MHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVL 322
MHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK ++ A ++E +
Sbjct: 229 MHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDM 288
Query: 323 SKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHP 382
S+E +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL+ELL ETAYVQ P
Sbjct: 289 SRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPP 348
Query: 383 VNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVP 442
V+ + +PPD+RPAFRH F+ + PG+ K+YGV+ECDPLV+ G+DR+ K M+IPYVP
Sbjct: 349 VDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVP 408
Query: 443 MLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
MLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++SV M++V+EALDTLGSTKWR
Sbjct: 409 MLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWR 468
Query: 503 VNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERH 562
VNK++LSV+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW VRK+KKINQE H
Sbjct: 469 VNKRILSVVESIWAGGGNIAGLVDRKDVPIPELH-SDDIMEVKKWKWRVRKSKKINQELH 527
Query: 563 SQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622
SQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD+CRG+LEFAEGRP
Sbjct: 528 SQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRP 587
Query: 623 LGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDP 682
LGKSGLRWLKIHLA+L++GG+EKL +D RLAFVENH+ +I DSA NP+NG+RWWL AEDP
Sbjct: 588 LGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDP 647
Query: 683 FQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEK 742
FQCLAACINLSEALKSSSPH+V SHLPIHQDGSCNGLQHYAALGR+++EAAAVNLVAG+K
Sbjct: 648 FQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDK 707
Query: 743 PADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVG 802
PADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQTVMTSVYGVT+VG
Sbjct: 708 PADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVG 767
Query: 803 AREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
AREQIKRRLEEKG I DDR LF A+CYAAKV+
Sbjct: 768 AREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 799
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/705 (71%), Positives = 603/705 (85%), Gaps = 7/705 (0%)
Query: 137 EPRRRIFVQDPPWFSSIFLKGLYKRIK------LQEYREMKKRKFNLLRRRQVKQETEAW 190
E +R+F+QDPPW SS+F+ L+ R K + ++R++ +LRRRQ+K ETEAW
Sbjct: 95 ESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAW 154
Query: 191 ERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPH 250
E+MV+EY+ELE +M EK+LAPNLP++K L LGWF PL +AIE+EQ + T K +AA+APH
Sbjct: 155 EQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPH 214
Query: 251 IELLPADKVAVIVMHKMMGLVM-AGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNY 309
I+ LPADK+AVIVMHK+MGL+M G E+RCVQVVQAAV IGMA+E E+RIH+FLEKTK
Sbjct: 215 IDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKL 274
Query: 310 KRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRL 369
++ A ++E +SKE +LRKRV SLIK RV+E +KL+K+EE + WGRDTQAKLG RL
Sbjct: 275 QKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRL 334
Query: 370 VELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGL 429
+ELL ETAYVQ PV+ + +PPD+RPAFRH FK + PG+ K+YGV+ECDPLV+ G+
Sbjct: 335 LELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGV 394
Query: 430 DRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNCMKKV 489
DR+ K M+IPYVPMLVPPKKW+GY+KGGYLFLPSY+MRTHGSR+QQ+A++ V M++V
Sbjct: 395 DRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQV 454
Query: 490 FEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKW 549
+EALDTLGSTKWRVNK++L+V+ESIW GGNIAGLVDR DV IPE S+D+ EV+KWKW
Sbjct: 455 YEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKW 514
Query: 550 SVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 609
VRK+KKINQE HSQRCDTELKLSVAR++KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD
Sbjct: 515 KVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSD 574
Query: 610 VCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENP 669
+CRG+LEFAEGRPLGKSGLRWLKIHLA+L++GGVEKL +D RLAFVENH+++I DSA NP
Sbjct: 575 LCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNP 634
Query: 670 INGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNT 729
+NG+RWWL AEDPFQCLAACINLSEALKSSSPH+VISHLPIHQDGSCNGLQHYAALGR++
Sbjct: 635 LNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDS 694
Query: 730 LEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
+EAAAVNLVAGEKPADVY+EIA+RV I++ DS KDP+ P ALLAK+LIDQVDRKLVKQ
Sbjct: 695 MEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQ 754
Query: 790 TVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
TVMTSVYGVT+VGAREQIKRRLEEKG I DDR LF A+CYAAKV+
Sbjct: 755 TVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVT 799
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
Length = 1021
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/668 (63%), Positives = 542/668 (81%), Gaps = 5/668 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 178 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 237
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA ++ LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 238 KIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 297
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 298 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 356
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL+ELL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 357 IVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAK 416
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 417 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 475
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLGSTKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 476 RTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVD 535
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEEGF+Y
Sbjct: 536 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFY 595
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 596 PHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKL 655
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+AF ENH+ +IFDSA+ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + IS
Sbjct: 656 SLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSIS 715
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 716 HIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 775
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 776 AEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 835
Query: 827 ACYAAKVS 834
ACYAAKV+
Sbjct: 836 ACYAAKVT 843
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/668 (63%), Positives = 541/668 (80%), Gaps = 5/668 (0%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M RK+ L+RRQVK ETEAWE+ EYKEL M E++LAPNLP++K LFLGWF PL +
Sbjct: 177 MGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRD 236
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
I EQ++ K KAAYA + LPAD +AVI MHK+MGL+M G + +VVQAA+ I
Sbjct: 237 KIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVI 296
Query: 290 GMAIEQEIRIHSFLEKTKNYK--RKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQK 347
G AIEQE+RIH+FLEKTK K + K D E V ++E+E LRK+V +L+K +++ +
Sbjct: 297 GDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV-TQEQEKLRKKVTNLMKKQKLRAVGQ 355
Query: 348 LLK-NEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILK 406
+++ +++KPWG+D +AK+GSRL++LL++TAY+Q P N PPD+RPAF H +T+ K
Sbjct: 356 IVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAK 415
Query: 407 HPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYVM 466
+ ++RYG+++CD LV +GL+R+A+HM+IPY+PMLVPP KW GY+KGG+L+LPSYVM
Sbjct: 416 ET-KSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVM 474
Query: 467 RTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVD 526
RTHG+R+Q+EA+K + N ++ VFEALDTLG+TKWR+NK+VLSV++ IW GG +A LVD
Sbjct: 475 RTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVD 534
Query: 527 RNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYY 586
R+D +PE+P +ED KW+W V+ KK N+ERHSQRCD ELKL+VAR+MKDEE F+Y
Sbjct: 535 RDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFY 594
Query: 587 PHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKL 646
PHN+DFRGRAYPMHPHLNHL SD+CRGVLEFAEGRPLG+SGLRWLKIHLANLF+GGVEKL
Sbjct: 595 PHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKL 654
Query: 647 SHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706
S +GR+ F ENH+ +IFDS++ P+ G RWWL AEDPFQCLA CINLSEA++SSSP + +S
Sbjct: 655 SLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVS 714
Query: 707 HLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDP 766
H+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAGEKPADVYS IA RV +IMKRD+ +DP
Sbjct: 715 HIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDP 774
Query: 767 SKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAA 826
++ P A+ A++L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LF A
Sbjct: 775 AEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGA 834
Query: 827 ACYAAKVS 834
ACYAAKV+
Sbjct: 835 ACYAAKVT 842
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1
Length = 1011
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/676 (62%), Positives = 538/676 (79%), Gaps = 4/676 (0%)
Query: 161 RIKLQEYREMKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLF 220
R+K Q+ M + KF L RRQVK ETE WER EY EL M E++LAPNLP++K LF
Sbjct: 160 RMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLF 219
Query: 221 LGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCV 280
LGWF PL +AI ++Q++ R K KA YA +++ LPADK++VI MHK+MG +M G ++ CV
Sbjct: 220 LGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCV 279
Query: 281 QVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTE-EVLSKEKELLRKRVNSLIKS 339
+VV AA +G AIEQEIRI +FL+K K + E E KE++ LRK+VN LIK
Sbjct: 280 KVVHAACTVGDAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKK 339
Query: 340 KRVMEAQKLLKNEE-TKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFR 398
+++ +K+L++ + TKPW D +AK+GSRL+ELL+ TAY+Q P + D PDVRPAF
Sbjct: 340 QKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFV 399
Query: 399 HRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGY 458
H FK + + ++YGV+ECDPLV +GL++S ++ ++PY+PMLVPP KW GY+KG Y
Sbjct: 400 HTFK--VAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAY 457
Query: 459 LFLPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG 518
LFL SY+M+THG+++Q+EALKS ++ VFEALDTLGSTKWRVNK+VL+V++ IW SG
Sbjct: 458 LFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSG 517
Query: 519 GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRM 578
G +A +VDR+DV +PEKP +ED ++KWKW V+ AKK+N ERHSQRCDTELKLSVAR+M
Sbjct: 518 GCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKM 577
Query: 579 KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANL 638
KDEE FYYPHN+DFRGRAYPM PHLNHL SD+CRGVLEFAEGRP+G SGLRWLKIHLANL
Sbjct: 578 KDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANL 637
Query: 639 FSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKS 698
++GGV+KLS DGRLAF ENHL +IFDSA+ P+ GSRWWL AEDPFQCLA CI+L+EAL+S
Sbjct: 638 YAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRS 697
Query: 699 SSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIM 758
SP +V+SH+PIHQDGSCNGLQHYAALGR+TL A AVNLVAGEKPADVYS IA RV +IM
Sbjct: 698 PSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIM 757
Query: 759 KRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHIT 818
+RD+++DP P+AL A+ L++QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+
Sbjct: 758 RRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFG 817
Query: 819 DDRQLFAAACYAAKVS 834
D++++F AACYAAKV+
Sbjct: 818 DEKEVFGAACYAAKVT 833
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana
sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/669 (62%), Positives = 535/669 (79%), Gaps = 9/669 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+NLLRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA HI
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D E+ + KE+E +RK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KG YLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWR+N++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE+P +ED +++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLGKSGLRWLKIHLAN++ GGV+K
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDK 635
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS++GR+AF ENH+ +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S++PIHQDGSCNGLQHYAALGR+TL AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIKRRL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFA 815
Query: 826 AACYAAKVS 834
AACYAAK +
Sbjct: 816 AACYAAKTT 824
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum
GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/669 (62%), Positives = 532/669 (79%), Gaps = 9/669 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M K+N LRRRQ+K ETEAWE EY+EL M E++LAPNLP++K LFLGWF PL +
Sbjct: 161 MGVGKYNFLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRD 220
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
AI EQK+ K + AYAP + LPA+ +AVI MHK+MGL+M G +VVQAA +I
Sbjct: 221 AIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYI 280
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEV---LSKEKELLRKRVNSLIKSKRVMEAQ 346
G AIE E RIH FLEKTK K + D EE + KE+E LRK+V L+K +++ + +
Sbjct: 281 GEAIEHEARIHRFLEKTK--KSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVR 338
Query: 347 KLLKNEET-KPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTIL 405
K++K ++ KPWG+D K+G RL+++L+ETAY+Q P + D PPD+RPAF H KT+
Sbjct: 339 KIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV- 397
Query: 406 KHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFLPSYV 465
K ++RYGV++CDPLV +GLD++A+HM+IPY+PMLVPP+ W GY+KGGYLFLPSY+
Sbjct: 398 --ETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYI 455
Query: 466 MRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLV 525
MRTHG+++Q+EA+K V ++ VF+ALDTLG+TKWRVN++VL +++ IW SGG +A LV
Sbjct: 456 MRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLV 515
Query: 526 DRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFY 585
DR DV +PE P +ED E++KWKW V+ KK N ERHSQRCD ELKL+VAR+MKDE+GFY
Sbjct: 516 DREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFY 575
Query: 586 YPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEK 645
YPHNLDFRGRAYPMHP+LNHL SD+CRG+LEFAEGRPLG SGLRWLKIHLAN++ GGV+K
Sbjct: 576 YPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDK 635
Query: 646 LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVI 705
LS++GR+AF ENHL +IFDSAE P+ G RWWL AEDPFQCLA CIN++EAL+S SP + I
Sbjct: 636 LSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAI 695
Query: 706 SHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKD 765
S++PIHQDGSCNGLQHYAALGR+ L AAAVNLVAG+KPADVYS IA RV +IMKRD+ KD
Sbjct: 696 SYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKD 755
Query: 766 PSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFA 825
P+ P + A++LI+QVDRKLVKQTVMTSVYGVT++GAR+QIK+RL+E+G I DD +LFA
Sbjct: 756 PANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFA 815
Query: 826 AACYAAKVS 834
AACYAAK +
Sbjct: 816 AACYAAKTT 824
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis
thaliana GN=RPOT1 PE=2 SV=1
Length = 976
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/673 (59%), Positives = 523/673 (77%), Gaps = 9/673 (1%)
Query: 170 MKKRKFNLLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSE 229
M +KF +L++RQVK ETE WER E +E+ A M E++LAPNLP++K LFLGWF P+
Sbjct: 127 MGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRN 186
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHED-RCVQVVQAAVH 288
AI+ + + KK K YAP +E LPADK+AVI MHKMMGL+M E V++V AA
Sbjct: 187 AIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQ 246
Query: 289 IGMAIEQEIRIHSFLEKT--KNYKRKKIIAD----TEEVLSKEKELLRKRVNSLIKSKRV 342
IG A+EQE+RI+SFL+K KN K I + +EE+++KE E RK+V L++ ++
Sbjct: 247 IGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKL 306
Query: 343 MEAQKLL-KNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRF 401
+ + L+ K++ KPWG++ Q K+G+RL++LL+E AY+Q P D PPD+RPAF+ F
Sbjct: 307 RQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNF 366
Query: 402 KTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLFL 461
+T+ KT++RYG +ECDPLVL+GLD+SA+HM+IPY+PML+PP+ W GY++G + FL
Sbjct: 367 RTVTLE-NTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFL 425
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNI 521
PSYVMRTHG+++Q+ +K ++ V+EALDTLG+TKW++NK+VLS+++ IW +GG I
Sbjct: 426 PSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRI 485
Query: 522 AGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDE 581
GLVDR DV IPE+P ED + + W+W +KA K N ERHSQRCD ELKL VAR+MKDE
Sbjct: 486 GGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE 545
Query: 582 EGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSG 641
EGFYYPHN+DFRGRAYP+HP+LNHL SD+CRG+LEF EG+PLGKSGLRWLKIH+ANL++G
Sbjct: 546 EGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAG 605
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
GV+KL+++ R+AF E+HL +IFDS++ P+ G RWWL AEDPFQCLAACINLSEAL+S P
Sbjct: 606 GVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFP 665
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRD 761
+ ISH+PIHQDGSCNGLQHYAALGR+ L A AVNLV GEKPADVY+EIA RV +IM++D
Sbjct: 666 EAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQD 725
Query: 762 SNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDR 821
+ +DP P A AK+++DQVDRKLVKQTVMTSVYGVT+ GAR+QIK+RL+E+G DD
Sbjct: 726 AEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDS 785
Query: 822 QLFAAACYAAKVS 834
F A+CYAAK++
Sbjct: 786 LTFHASCYAAKIT 798
>sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=1
SV=2
Length = 1351
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 247/666 (37%), Positives = 357/666 (53%), Gaps = 58/666 (8%)
Query: 177 LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNL--------PHIKGLFLGWFGPLS 228
+L R + E W+ +E K IEK L L P +K LS
Sbjct: 418 VLENRATEAARERWKHDFEEAKARGDISIEKNLNVKLWKWYNEMLPLVKEEINHCRSLLS 477
Query: 229 EAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVH 288
E + ++ + + + Y P++ L+ K+ VI + +++ L G ++ +A +
Sbjct: 478 EKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVIS 537
Query: 289 IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKEL--LRKRVNSLIKSKRVMEAQ 346
+G AIE E R L+ R +V K E L + S+ +S ++ E
Sbjct: 538 VGKAIEMEFRSEQVLKSESQAFR--------DVNKKSPEFKKLVQNAKSVFRSSQI-EQS 588
Query: 347 KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ----HPVNPADYSPPDVRPAFRHRFK 402
K+L W + +A++GS L+ +LI+ A V PV A PAF H ++
Sbjct: 589 KIL-------WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGE--APAFAHGYQ 639
Query: 403 TILKHPGQKTTKRYGVVECDPLVLEGLD--RSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
H G K GV++ ++ L+ R + +PMLV PK W + GGY +
Sbjct: 640 Y---HNGSK----LGVLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHY 692
Query: 461 LPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGG 519
S ++RT S +Q LK+ + N + +V++ L+ LG T W VN++V V+ +W G
Sbjct: 693 TQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGE 752
Query: 520 NIAGLVDRND--VLIPEKPLSEDMTEVQKWKWSVRK-AKKINQERHSQRCDTELKLSVAR 576
+ D VL P P + D + ++ WK V+ A K + +R S RCDT KL +AR
Sbjct: 753 GFLDIPGAQDEMVLPPAPPKNSDPSILRAWKLQVKTIANKFSSDR-SNRCDTNYKLEIAR 811
Query: 577 RMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLA 636
E+ Y+PHNLDFRGRAYP+ PH NHL +D+ RG+L F G+ LG SGL+WLKIHL+
Sbjct: 812 AFLGEK-LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLS 870
Query: 637 NLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEAL 696
NLF G +KL R+AF E+HL +I DSAENP+ G RWW TA+ P+Q LA C L+E +
Sbjct: 871 NLF--GFDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVM 928
Query: 697 KSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHE 756
K +P ISH P+HQDG+CNGLQHYAALG + A VNLV +KP DVY+ +A V +
Sbjct: 929 KMDNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQK 988
Query: 757 IMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGH 816
++ + K AKIL D++ RK+VKQTVMT+VYGVT+VGA QI ++L
Sbjct: 989 RLEIAAEKGDEN------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP--- 1039
Query: 817 ITDDRQ 822
I DDR+
Sbjct: 1040 IFDDRK 1045
>sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cyt-5 PE=3 SV=2
Length = 1423
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 214/600 (35%), Positives = 332/600 (55%), Gaps = 43/600 (7%)
Query: 231 IEREQKMQRTKKQK-----AAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQA 285
+E E+ +KK K Y P I +++A + + + + G + +
Sbjct: 420 VEVEKSEMVSKKNKDDLDRCIYGPFIRQSNPERLAAVTIISTLSSLAMGGAHKGSTIASL 479
Query: 286 AVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLR-KRVNSLIKSKRVME 344
HI E++IR+ +K + K+ + + + +LR K + S + +
Sbjct: 480 ITHIAKFAEEDIRV----QKAEALISKRNLRKAKSKQHNPRSVLRFKNSTASAGSSDMAD 535
Query: 345 AQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYV----QHPVNPADYSPPDVRPAFRHR 400
+ + + + W + K+G+ L+ L++TA + + PV + +PAF H
Sbjct: 536 SNNVAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHV 593
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRS-AKHMLIPYVPMLVPPKKWKGYNKGGYL 459
+ + K+ G + + V+E L R L ++PM+ PP W + KG YL
Sbjct: 594 MQL-------RKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYL 646
Query: 460 FLPSYVMRTHGSRKQQEALK--SVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS 517
+ V+R ++Q ++ M +VF+ LD LG T W++N V V+ +W S
Sbjct: 647 ETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNS 706
Query: 518 GGNIAGLVDRNDV--LIPEKPLSEDMTEVQKWKWSVRKAKKINQER---HSQRCDTELKL 572
G +A + + + L PE +ED T + W +++ K I ER HSQRC +L
Sbjct: 707 GKQVANIPPLDPIFDLPPEPASTEDPTVKRAW---LKEIKVIENERSGLHSQRCFMNFQL 763
Query: 573 SVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLK 632
+AR +D+ FY+PHN+DFRGRAYP+ P+LNH+ +D RG++ FA+G+PLG+SGLRWLK
Sbjct: 764 EIARAYRDQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLK 822
Query: 633 IHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINL 692
+HLAN++ G +K S R F + ++ I DS NP+NG++WWL AEDP+QCLA C L
Sbjct: 823 VHLANVY--GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFEL 880
Query: 693 SEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAV 752
+ AL+ P +SHLPIHQDG+CNGLQHYAALG +T A VNLV G++PADVYS +A
Sbjct: 881 AAALELEDPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAK 940
Query: 753 RVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLE 812
V + ++ D KD AK + ++ RK+VKQTVMT+VYGVT+VGAR+Q+ +++E
Sbjct: 941 LVIKGIEDDLAKDNE------FAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIE 994
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 355 bits (912), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 219/620 (35%), Positives = 333/620 (53%), Gaps = 49/620 (7%)
Query: 215 HIKGLFLGWFGPLSEAIEREQKM---------QRTKKQKAAYAPHIELLPADKVAVIVMH 265
++ LF W+ L + + E + K + Y P ++LL + K+A + +
Sbjct: 322 NVSSLFYSWYVQLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIM 381
Query: 266 KMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFL--EKTKNYKRKKIIADTEEVLS 323
++ L DR +V +G + E+E EK K+YK KK
Sbjct: 382 EVAQLSTNPRYDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKK---------- 431
Query: 324 KEKELLR--KRVNSLIKSKRVMEAQ-KLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQ 380
+ KEL ++ +K+ R+ + ++ N W K+GS + LL+ A ++
Sbjct: 432 RLKELFNDPRKFRQAVKNLRLSNTRDNIVLNPSVDSWPSAIVMKVGSVALCLLLSVAKIE 491
Query: 381 HPVNPADYSPPDVR----PAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM 436
V D S + AF H ++ G+K VE L+ +++ H+
Sbjct: 492 --VTAKDLSTGGILKQEVAAFVHTYQY---SNGRKVGMIVPHVEFYKLLSRDIEKP--HL 544
Query: 437 LIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDT 495
+PMLV PK W + GGY + ++R G+ +Q + L + N + ++F+A+ +
Sbjct: 545 HPQLLPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSS 604
Query: 496 LGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRN-DVLIPEKPLSEDMTEVQKWKWSVRKA 554
LG WR+N+++ +VL IW SG + R +P P + K W R+
Sbjct: 605 LGKVSWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMPPYP-KNSINPRDKVIWHTRRK 663
Query: 555 K--KINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
+ + HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ HL+H+S+DVCR
Sbjct: 664 ELAALKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCR 722
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPING 672
G+LEF+ G+PLG GL WLK+HLANLF G+ K R AFV++++ E+FDSA+ P++G
Sbjct: 723 GLLEFSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDG 780
Query: 673 SRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEA 732
++WW A+DPFQ LAAC ++EA++S S ISH+PI QDG+CNGLQHYAALG + A
Sbjct: 781 NKWWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGA 840
Query: 733 AAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM 792
VNL + P+DVY +A V +K+D+ +A L D+V R +VK TVM
Sbjct: 841 KQVNLWPSDHPSDVYEAVAEIVRGFLKKDAEAGDE------MANFLKDKVTRSVVKPTVM 894
Query: 793 TSVYGVTFVGAREQIKRRLE 812
T+VYGVT+VGAR+QI +LE
Sbjct: 895 TNVYGVTYVGARKQISEKLE 914
>sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT
PE=1 SV=2
Length = 1230
Score = 322 bits (826), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 196/575 (34%), Positives = 309/575 (53%), Gaps = 37/575 (6%)
Query: 249 PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKN 308
P + LL +V +++ + L G + +A + Q R+ ++ +N
Sbjct: 469 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQN 528
Query: 309 YKRKKIIADTEEVLSKEKELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSR 368
+ RK + + E L R+ L + + E +PW Q +LG
Sbjct: 529 HYRKYLCLLASDAEVPEPCLPRQYWEELGAPEALRE----------QPWPLPVQMELGKL 578
Query: 369 LVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHPGQ-KTTKRYGVVECDPLVLE 427
L E+L++ + ++ +P R +L H + ++ G+++ P ++
Sbjct: 579 LAEMLVQATQMPCSLD---------KPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQ 629
Query: 428 GLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYVMRT-HGSRKQQEALKSVTG 483
L+++A+ L VPML PP W + G +L P+ +MRT G+ + QE L++
Sbjct: 630 LLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPP 689
Query: 484 NCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKP---LSED 540
+ +AL LG+ WRVN +VL ++ ++ + G V P+ P L
Sbjct: 690 TALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHS 749
Query: 541 MTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYP 598
+K + + +K+ +E HS R + +LS+A+ ++D F+ PHN+DFRGR YP
Sbjct: 750 AAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLPHNMDFRGRTYP 808
Query: 599 MHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENH 658
PH NHL SDV R +LEFA+GRPLG GL WLKIHL NL +G ++ RLAF E
Sbjct: 809 CPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREPLRKRLAFAEEV 867
Query: 659 LYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNG 718
+ +I DSA+ P+ G +WW+ AE+P+Q LA C+ ++ A+++S P + +SHLP+HQDGSCNG
Sbjct: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNG 927
Query: 719 LQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKIL 778
LQHYAALGR+++ AA+VNL + P DVYS +A +V ++D+ + +A++L
Sbjct: 928 LQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVL 981
Query: 779 IDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 982 EGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 1016
>sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial OS=Mus musculus
GN=Polrmt PE=2 SV=1
Length = 1207
Score = 313 bits (801), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 271/474 (57%), Gaps = 25/474 (5%)
Query: 349 LKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKTILKHP 408
L+ +PW +LG +L ELL++ VQ P + A R + +
Sbjct: 530 LEAPAQQPWSVPVLLQLGKQLAELLVQA--VQMPRSLA------ARQGAQRSIPVLYHVY 581
Query: 409 GQKTTKRYGVVECDPLVLEGLDRSAKHMLI---PYVPMLVPPKKWKGYNKGGYLFLPSYV 465
++ ++ G+++ P L+ +A+ L VPML PP W + G YL + +
Sbjct: 582 SFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKL 641
Query: 466 MR-THGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGL 524
MR T G+ + Q L+ + +AL LG+ WRVN +L ++ I+ G +
Sbjct: 642 MRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLG 701
Query: 525 VD--RNDVLIPEK-PLSEDMTEVQK--WKWSVRKAKKINQERHSQRCDTELKLSVARRMK 579
V R++ P + L T V K + + + K+ +E HS R + +LS+A+ ++
Sbjct: 702 VPPPRSEAPRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR 761
Query: 580 DEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLF 639
F+ PHN+DFRGR YP PH NHL SD+ R +LEFAEGRPLG GL WLKIHL NL
Sbjct: 762 -HRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL- 819
Query: 640 SGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSS 699
+G + S RLAF + + EI DSA+NP+ G +WW+ A++P+Q LA C+ ++ A++S
Sbjct: 820 TGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSP 879
Query: 700 SPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMK 759
P + ISHLP+HQDGSCNGLQHYAALGR+++ AA+VNL + P DVY E+A +V E +
Sbjct: 880 DPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQ 939
Query: 760 RDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+D+ + +A++L + RK+VKQTVMT VYGVT G R QI++RL E
Sbjct: 940 QDAKEG------LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE 987
>sp|Q8L6J2|RPO2A_TOBAC DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum
GN=RPOT2-SYL PE=3 SV=1
Length = 332
Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/154 (74%), Positives = 138/154 (89%)
Query: 681 DPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAG 740
DPFQCLA CINLSEA++SSSP + +SH+P+HQDGSCNGLQHYAALGR+ L AAAVNLVAG
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 741 EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTF 800
EKPADVYS IA RV +IMKRD+ +DP++ P A+ A++L++QVDRKLVKQTVMTSVYGVT+
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 801 VGAREQIKRRLEEKGHITDDRQLFAAACYAAKVS 834
+GAR+QIKRRL+E+G I DD +LF AACYAAKV+
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVT 154
>sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteria phage T3 GN=1 PE=3
SV=1
Length = 884
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 179/631 (28%), Positives = 303/631 (48%), Gaps = 86/631 (13%)
Query: 209 LAPNLPHIKGLFLGWFGPLSEAIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMM 268
LA LP + + W E+ + ++ +AYAP ++LL + A I +
Sbjct: 75 LATLLPKLTTRIVEWL---------EEYASKKGRKPSAYAP-LQLLKPEASAFITLK--- 121
Query: 269 GLVMAGHEDRCVQVVQAAVH-IGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSK-EK 326
+++A + +QAA +G AIE E R + ++ + K EE L+K
Sbjct: 122 -VILASLTSTNMTTIQAAAGMLGKAIEDEAR----FGRIRDLEAKHFKKHVEEQLNKRHG 176
Query: 327 ELLRKRVNSLIKSKRVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNP 385
++ +K ++++ M + LL E W ++T +G RL+E+LIE T V+ +
Sbjct: 177 QVYKKAFMQVVEAD--MIGRGLLGGEAWSSWDKETTMHVGIRLIEMLIESTGLVELQRHN 234
Query: 386 ADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLV 445
A + D H + + KR G L G+ + P +V
Sbjct: 235 AGNAGSD------HEALQLAQEYVDVLAKRAGA-------LAGISPM-------FQPCVV 274
Query: 446 PPKKWKGYNKGGYLF---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWR 502
PPK W GGY P ++RTH + L M +V++A++ +T W+
Sbjct: 275 PPKPWVAITGGGYWANGRRPLALVRTHSKK----GLMRYEDVYMPEVYKAVNLAQNTAWK 330
Query: 503 VNKQVLSVLESIWVSGGN--IAGLVDRNDVLIPEKPLSEDMTE--VQKWKWSVRKAKKIN 558
+NK+VL+V+ I V+ N +A + +P KP D E +++WK + +++
Sbjct: 331 INKKVLAVVNEI-VNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLD 389
Query: 559 QERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFA 618
+ R S+R E L A + ++ ++P+N+D+RGR Y + P N +D+ +G+L A
Sbjct: 390 KARVSRRISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLA 448
Query: 619 EGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLT 678
+G+P+G+ G WLKIH AN GV+K+ R+AF+E H+ +I A++PIN + WW
Sbjct: 449 KGKPIGEEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPINNT-WWAE 505
Query: 679 AEDPFQCLAACINLSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAV 735
+ PF LA C + H +S+ LP+ DGSC+G+QH++A+ R+ + AV
Sbjct: 506 QDSPFCFLAFCFEYA-----GVTHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 560
Query: 736 NLVAGEKPADVYSEIAVRVHEIMKRDS-NKDPSK------------------HPQALLAK 776
NL+ E D+Y +A +V+EI+K+D+ N P++ L +
Sbjct: 561 NLLPSETVQDIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQ 620
Query: 777 ILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
L V R + K++VMT YG G R+Q+
Sbjct: 621 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQV 651
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1
SV=2
Length = 883
Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 184/678 (27%), Positives = 307/678 (45%), Gaps = 107/678 (15%)
Query: 178 LRRRQVKQETEAWERMVDEYKELEAKMIEKRL--------APNLPHIKGLFLGWFGPLSE 229
L R Q+ E E++E ++ KM E++L A P I L +++
Sbjct: 32 LAREQLALEHESYEMGEARFR----KMFERQLKAGEVADNAAAKPLITTLLPKMIARIND 87
Query: 230 AIEREQKMQRTKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHI 289
E E K +R K+ A ++ + + VA I + + + + ++ VQ V +A I
Sbjct: 88 WFE-EVKAKRGKRPTAF--QFLQEIKPEAVAYITIKTTLACLTSA-DNTTVQAVASA--I 141
Query: 290 GMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA-- 345
G AIE E R + + +K + +E L KRV + K +V+EA
Sbjct: 142 GRAIEDEARFGRIRDLEAKHFKKNV-----------EEQLNKRVGHVYKKAFMQVVEADM 190
Query: 346 --QKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHRFKT 403
+ LL E W ++ +G R +E+LIE+ + HR
Sbjct: 191 LSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGM----------------VSLHRQNA 234
Query: 404 ILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGGYLF 460
+ +T +E P E + A + + P + P +VPPK W G GGY
Sbjct: 235 GVVGQDSET------IELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWA 288
Query: 461 ---LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI--W 515
P ++RTH + AL M +V++A++ +T W++NK+VL+V I W
Sbjct: 289 NGRRPLALVRTHSKK----ALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKW 344
Query: 516 --VSGGNIAGLVDRNDVLIPEKPLSEDMT--EVQKWKWSVRKAKKINQERHSQRCDTELK 571
+I ++R + +P KP DM + WK + + ++ R S+R E
Sbjct: 345 KHCPVEDIPA-IEREE--LPMKPEDIDMNPEALTAWKRAAAAVYRKDKARKSRRISLEFM 401
Query: 572 LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWL 631
L A + + + ++P+N+D+RGR Y + N +D+ +G+L A+G+P+GK G WL
Sbjct: 402 LEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYWL 460
Query: 632 KIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACIN 691
KIH AN GV+K+ R+ F+E + I A++P+ + WW + PF LA C
Sbjct: 461 KIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-WWAEQDSPFCFLAFCFE 517
Query: 692 LSEALKSSSPHSVISH---LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
+ H +S+ LP+ DGSC+G+QH++A+ R+ + AVNL+ E D+Y
Sbjct: 518 YA-----GVQHHGLSYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYG 572
Query: 749 EIAVRVHEIMKRDSNKDPSKH-------------------PQALLAKILIDQVDRKLVKQ 789
+A +V+EI++ D+ +AL + L V R + K+
Sbjct: 573 IVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQWLAYGVTRSVTKR 632
Query: 790 TVMTSVYGVTFVGAREQI 807
+VMT YG G R+Q+
Sbjct: 633 SVMTLAYGSKEFGFRQQV 650
>sp|P18147|RPOL_BPK11 DNA-directed RNA polymerase OS=Enterobacteria phage K11 GN=1 PE=3
SV=1
Length = 906
Score = 196 bits (497), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 158/558 (28%), Positives = 271/558 (48%), Gaps = 82/558 (14%)
Query: 288 HIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLSKEKELLRKRVNSLIKSK--RVMEA 345
+G A+E E R E+ Y +K + + L KRV + K +V+EA
Sbjct: 160 QLGKALEDEARFGRIREQEAAYFKKNV-----------ADQLDKRVGHVYKKAFMQVVEA 208
Query: 346 ----QKLLKNEETKPWGRDTQAKLGSRLVELLIE-TAYVQHPVNPADYSPPDVRPAFRHR 400
+ +L + W D Q +G++L+ELLIE T V+ N DV
Sbjct: 209 DMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMADGSDDV------- 261
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHM--LIP-YVPMLVPPKKWKGYNKGG 457
T ++ +V+ P +E L + A + + P + P +VPPK W GG
Sbjct: 262 --TSMQ-----------MVQLAPAFVELLSKRAGALAGISPMHQPCVVPPKPWVETVGGG 308
Query: 458 YLFL---PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESI 514
Y + P ++RTH + AL+ M +V++A++ +T W+VNK+VL+V+ I
Sbjct: 309 YWSVGRRPLALVRTHSKK----ALRRYADVHMPEVYKAVNLAQNTPWKVNKKVLAVVNEI 364
Query: 515 --W--VSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAK--KINQERHSQRCDT 568
W G++ ++R + +P +P D EV + W A + ++ R S+RC
Sbjct: 365 VNWKHCPVGDVPA-IEREE--LPPRPDDIDTNEVARKAWRKEAAAVYRKDKARQSRRCRC 421
Query: 569 ELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGL 628
E ++ A + + + ++P+N+D+RGR Y + N +D+ +G L A+G+P+G G
Sbjct: 422 EFMVAQANKFANHKAIWFPYNMDWRGRVYAV-SMFNPQGNDMTKGSLTLAKGKPIGLDGF 480
Query: 629 RWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAA 688
WLKIH AN GV+K+ R+ F+E + I SA +P+N + WW + PF LA
Sbjct: 481 YWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPLNNT-WWTQQDSPFCFLAF 537
Query: 689 CINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYS 748
C + ++ LP+ DGSC+G+QH++A+ R+++ AVNL+ + D+Y
Sbjct: 538 CFEYAGVKHHGLNYNC--SLPLAFDGSCSGIQHFSAMLRDSIGGRAVNLLPSDTVQDIYK 595
Query: 749 EIAVRVHEIM------------KRDSNKDPSKHPQ-------ALLAKILIDQVDRKLVKQ 789
+A +V+E++ ++ ++K+ + + L A+ L V RK+ K+
Sbjct: 596 IVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQWLQYGVTRKVTKR 655
Query: 790 TVMTSVYGVTFVGAREQI 807
+VMT YG R+Q+
Sbjct: 656 SVMTLAYGSKESLVRQQV 673
>sp|P06221|RPOL_BPSP6 DNA-directed RNA polymerase OS=Enterobacteria phage SP6 PE=2 SV=1
Length = 874
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 156/631 (24%), Positives = 278/631 (44%), Gaps = 85/631 (13%)
Query: 224 FGPLSEAIEREQKMQRTKKQKAAYA-PHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQV 282
P++E I+ ++ KK +A A ++ + + A I M +M ++ + D +Q
Sbjct: 50 IAPMAEGIQAYKEEYEGKKGRAPRALAFLQCVENEVAAYITMKVVMDML---NTDATLQA 106
Query: 283 VQAAVHIGMAIEQEIRIHSFLEKTKNY--KRKKIIADTEEVLSKEKELLRKRVNSLIKSK 340
+ A+ + IE ++R Y K KK + S+ K +++ K
Sbjct: 107 I--AMSVAERIEDQVRFSKLEGHAAKYFEKVKKSLK-----ASRTKSYRHAHNVAVVAEK 159
Query: 341 RVMEAQKLLKNEETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPPDVRPAFRHR 400
V A+K + + W ++TQ ++G+ L+E+L + + P F
Sbjct: 160 SV--AEKDADFDRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRA 205
Query: 401 FKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKHMLIPYVPMLVPPKKWKGYNKGGYLF 460
+T G KT E + + Y P ++PP+ W+ GG+
Sbjct: 206 MRTY----GGKTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGGFHT 261
Query: 461 --LPSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIW--- 515
+ S + G+R E ++ +T M KV++A++ L +T+W++NK VL+V+E +
Sbjct: 262 EKVASRIRLVKGNR---EHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLD 318
Query: 516 VSGG--NIAGLVDRNDVLIPEKPLS-----------EDMTEVQKWK----WSVRKAKKIN 558
+ G + L+D+ + P P+ ++M ++W+ W A+
Sbjct: 319 LGYGVPSFKPLIDKENK--PANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYT 376
Query: 559 QE--RHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E R S+ + AR+ E Y+ + +D R R Y L+ S+D+ + +L
Sbjct: 377 AETKRGSKSAAVVRMVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLR 436
Query: 617 FAEGRPL-GKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIF--DSAENPINGS 673
F EGRP+ G L+W I+ ANL+ G +K + D R++ V + ++ D A +P+ +
Sbjct: 437 FTEGRPVNGVEALKWFCINGANLW--GWDKKTFDVRVSNVLDEEFQDMCRDIAADPLTFT 494
Query: 674 RWWLTAEDPFQCLAACINLSEALK---SSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
+W A+ P++ LA C ++ L +HLP+HQDGSC+G+QHY+A+ R+ +
Sbjct: 495 QW-AKADAPYEFLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEV 553
Query: 731 EAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILID---------- 780
A AVNL + P D+Y +A V I K D + +
Sbjct: 554 GAKAVNLKPSDAPQDIYGAVAQVV--IKKNALYMDADDATTFTSGSVTLSGTELRAMASA 611
Query: 781 ----QVDRKLVKQTVMTSVYGVTFVGAREQI 807
+ R L K+ VMT YG T + RE +
Sbjct: 612 WDSIGITRSLTKKPVMTLPYGSTRLTCRESV 642
>sp|P33540|RPOP_NEUCS Probable DNA-directed RNA polymerase OS=Neurospora crassa PE=3 SV=1
Length = 896
Score = 126 bits (316), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 192/386 (49%), Gaps = 38/386 (9%)
Query: 441 VPMLVPPKKWKGYNK------GGYLFLPSYVMRTHGSRKQQEA-LKSVTGNCMKKVFEAL 493
+PM++PP +WK + GG + + +R ++ + + +T N K++ +A+
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYN--KELVDAV 341
Query: 494 DTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRK 553
+ + +N ++L +++ D+ D +I K + D + ++ RK
Sbjct: 342 NFKSKIPYTINLKILD-----FITRDEFINR-DKKDNVIIYKHIHPDSALLGEYMKD-RK 394
Query: 554 AKKINQ--ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
KI++ +S+ +S+A+ MKD + FY +D+RGR Y LN ++
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 612 RGVLEFAEGRPLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPIN 671
R +L F EG+ L GL+ LKI+ AN F G++K S + RL +VE +L++I D I+
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTANAF--GLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 672 GSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLE 731
W A++P LA + L + P + ISHLPI D +CNGLQH +A+ + +
Sbjct: 508 NYEIWREADEPLLFLACALELKGY--NEDP-NFISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 732 AAAVNLVA---GEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVK 788
A VNL+ + P D+YSE+ + K++ + + L +I V+R LVK
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHI----KQEILEASKSYEHTNLERI---NVERCLVK 617
Query: 789 QTVMTSVYGVTFVGAREQIKRRLEEK 814
+ +MT YG T G +QI + +K
Sbjct: 618 RGLMTITYGATERGIYDQIVSKFFQK 643
>sp|P22372|RPOP_CLAPU Probable DNA-directed RNA polymerase OS=Claviceps purpurea PE=3
SV=1
Length = 936
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 102/406 (25%), Positives = 189/406 (46%), Gaps = 60/406 (14%)
Query: 441 VPMLVPPKKWKGYNKGGYL-----FLPSYVMRTHG----SRKQQEALKSVTGNCMKKVFE 491
+PM+V PK + GGYL +L S + + SR Q++ + ++E
Sbjct: 314 LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLTKKLNMNDISRIQEKNI----------IYE 363
Query: 492 ALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSV 551
+++ + +T +++NK++L L +V + + L +++T+++
Sbjct: 364 SINKMMATAFQINKKLLKYLLEDYVFSKLLK---------LEGDDLYKNITQIEIDNMDK 414
Query: 552 RKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVC 611
R +K Q+ SQ+ + + +A ++ Y+P LD RGR YP+ + ++ SS++
Sbjct: 415 RDNQKY-QQYLSQKLLRDYIIDIATVFQNVPELYFPLKLDHRGRLYPITAYFHYQSSELA 473
Query: 612 RGVLEFAEGRPLGKS---GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAEN 668
+ +L FA + +S + +LK + A F ++K S+D RL +V+ + EN
Sbjct: 474 KALLLFAIPDTIERSDSISIDYLKAYGATCFGNKLDKKSYDKRLQWVDAN-------WEN 526
Query: 669 PINGSRWWL--TAEDPFQCLAACIN---LSEALKSSSPHSVISHLPIHQDGSCNGLQHYA 723
IN L AE+ F LA C+ L++ L S + ++LP+ DG+CNG QH
Sbjct: 527 IINYRNNVLLELAENKFMFLAYCLEIERLNQFLNDDSIENFKTYLPLQLDGTCNGFQHIV 586
Query: 724 ALGRNTLEAAAVNLVAGEK---PADVYSEIA--VRVHEIMKRDSNKDPSKHPQALLAKIL 778
L + +NL K P+D YS + + +H + K+D + D K +++
Sbjct: 587 LLSNEVKLYSQLNLDGKSKNQDPSDFYSFMINQLNIHLLNKKDVSTD--KEDIESYDRLI 644
Query: 779 IDQVDRKLVKQTVMTSVYGV-TFVGAREQIK--------RRLEEKG 815
+ R +KQ +MT Y F A+ I+ + ++EKG
Sbjct: 645 NLGLSRANIKQAIMTKPYNAKDFTVAKYIIETLLIASEDKYIDEKG 690
>sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase OS=Agaricus bitorquis PE=3
SV=1
Length = 1102
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 165/333 (49%), Gaps = 50/333 (15%)
Query: 489 VFEALDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWK 548
++ +++ L S K+++NK +L+ + + W + + L ++L KP+ E
Sbjct: 527 LYSSINYLNSIKFKINKAMLNFILAEWDNKD--SKLFKGYNML---KPILE--------- 572
Query: 549 WSVRKAKKINQERHSQRCDTELK---LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNH 605
+K+I +E+ S L +S+A KD E FY P +DFRGR YP+ ++++
Sbjct: 573 ---TDSKEIKEEKVSSNSKYTLYSNIISLASLYKDNE-FYLPVYVDFRGRVYPLSNYISY 628
Query: 606 LSSDVCRGVLEFAEGR-PLGKSGLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFD 664
D+ R ++ FA+ + L SG L ++LANL G +KL RL V+ + E +
Sbjct: 629 QGGDLARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVDGIIKEYLE 686
Query: 665 SAENPINGSRWWLTAED----PFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQ 720
S N I+ +++ D PFQ ++ I ++ L S+P + IS+ PI D SC+G+Q
Sbjct: 687 S--NEISNTKYIEDNIDKISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQ 741
Query: 721 HYAALGRNTLEAAAVNLVAG------EKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774
H AAL A+ VNL + P D Y+ + +I + N D ++
Sbjct: 742 HIAALTLEKELASNVNLYTDSSNPKEDYPQDFYT---YALEKIRDKLINSDITELRDI-- 796
Query: 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQI 807
+++RK++K++VMT Y ++ G E +
Sbjct: 797 ------KLNRKIIKRSVMTIPYNISMAGIGEHL 823
>sp|Q01521|RPOP_PODAS Probable DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 948
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 181/387 (46%), Gaps = 39/387 (10%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGNC-MKKVFEALDTLGST 499
+PM+V PK + GGYL Y+ K++ L+ T ++F+ ++ L S
Sbjct: 342 IPMIVKPKPYTTRVNGGYLSNDLYI--NENIVKEKWNLRDNTQILHFNQIFDLVNNLSSI 399
Query: 500 KWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQ 559
+++N VL +E + G + +N+++ P + KK
Sbjct: 400 GYKINTDVLDFIE---LYGSDYF----KNELIDPRYS--------HPLLKKSKLTKKEKM 444
Query: 560 ERHSQRCDTELK---LSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLE 616
E S EL+ L +A ++ F+ P N DFRGR Y +LN+ S+D+ + +L
Sbjct: 445 ELDSFLAKKELQENILGLAEIFRNIPEFFIPVNADFRGRVYCTPEYLNYQSTDLAKSLLL 504
Query: 617 FAE-GRPLGKS--GLRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGS 673
F++ GR K L +LKI+ + F G++KLS + R+ +V+ +L ++ +N NG
Sbjct: 505 FSKPGRMYKKDYIALSYLKIYGGSSF--GLDKLSANDRIKWVDKNL----NNIKNYRNG- 557
Query: 674 RWWLTAEDPFQCLAACINLSEALKSSSPHSVI---SHLPIHQDGSCNGLQHYAALGRNTL 730
+ A++ F LA CI + L H V ++LPI D +CNG QH + L ++
Sbjct: 558 KLIKEAKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDATCNGFQHLSLLSLDSN 617
Query: 731 EAAAVNLVAG---EKPADVYSEIAVRVHEIMKRD--SNKDPSKHPQALLAKILIDQVDRK 785
+ +NL + P D Y+ + V + +K + NK+ + +++ ++ R+
Sbjct: 618 LSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTELLENKNLTPKESESYNRLINMKIIRE 677
Query: 786 LVKQTVMTSVYGVTFVGAREQIKRRLE 812
++K+ +MT Y V+ I+ E
Sbjct: 678 IIKKGIMTIPYNVSNFSLINYIREGFE 704
>sp|P33541|RPOP_NEUIN Probable DNA-directed RNA polymerase OS=Neurospora intermedia PE=3
SV=2
Length = 811
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 72/384 (18%)
Query: 441 VPMLVPPKKWKGYNKGGYLFLPSYVMRTHGSRKQQEALKSVTGN--------CMKKVFEA 492
+PM+ PP W +GG L + + Q E+L V G+ K++
Sbjct: 243 LPMVCPPLPWGHGIRGGNL--------INLTDTQDESL--VVGSFHHRHKIAITDKLYNV 292
Query: 493 LDTLGSTKWRVNKQVLSVLESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVR 552
++ L + K+++N +LS L++ G I + +
Sbjct: 293 INKLNAFKFKINGDLLSYLQN---EGSFILDFYK-----------------------NTK 326
Query: 553 KAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCR 612
K IN + + +AR + FY N+D+RGR Y +L++ S++
Sbjct: 327 KDTYINNM---------ITIDIARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSL 376
Query: 613 GVLEFAEGRPLGKSGLRWLKIHLANLFSGG--VEKLSHDGRLAFVENHLYEIFDSAENPI 670
++ EG+ L + GL + ++ AN+++ G K S R +V +L I + I
Sbjct: 377 ALINLFEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNIIAMDKEFI 436
Query: 671 NGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTL 730
L AE P A C+ + + LK + + V + PI D +C+G+QH+AA+ +
Sbjct: 437 ------LKAESPTLFAAFCLTMRK-LKENPDYPVFN--PIFLDATCSGVQHFAAMLLDLE 487
Query: 731 EAAAVNLV-AGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQ 789
VNL+ +GE D YS++ +++ + + K K + I ++R L+K+
Sbjct: 488 LGKYVNLINSGESVNDFYSQLIPAINKAINESAEK---KFKNLKFSDI---SLNRSLLKK 541
Query: 790 TVMTSVYGVTFVGAREQIKRRLEE 813
+MT Y VT G EQ+K +LE+
Sbjct: 542 VIMTKSYNVTTYGITEQLKSKLEK 565
>sp|O03685|RPOP_GELSP Probable DNA-directed RNA polymerase OS=Gelasinospora sp. (strain
G114) PE=3 SV=1
Length = 831
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 584 FYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSGLRWLKIHLANLFS--G 641
FY N+D+RGR Y +L + S++ ++ EG+ L + GL + ++ AN+++ G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 642 GVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701
K S R +V +L I ++ I L AE P A C+ + + LK +
Sbjct: 428 KFSKKSFQDRFNWVVENLDNIIAMDKDFI------LKAESPTLFAAFCLTMRK-LKENPD 480
Query: 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLV-AGEKPADVYSEIAVRVHEIMKR 760
H V + PI D +C+G+QH+AA+ + VNL+ +GE D YS++ +++ +
Sbjct: 481 HPVFN--PIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINE 538
Query: 761 DSNKDPSKHPQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEE 813
+ K K + I ++R L+K+ +MT Y VT G EQ+K +LE+
Sbjct: 539 SAEK---KLKNVKFSDI---SLNRSLLKKVIMTKSYNVTTYGITEQLKSKLEK 585
>sp|Q00889|PSG6_HUMAN Pregnancy-specific beta-1-glycoprotein 6 OS=Homo sapiens GN=PSG6
PE=2 SV=1
Length = 435
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 8 SQIQYPPTCSTSTTTATRKALNIFNTKRDDGSSKILHFLHSCSSSSSSSSSFPVNLKSSS 67
QI Y P S T + +L I N ++D S LH + + + F V L S +
Sbjct: 86 GQIIYGPAYSGRETVYSNASLLIQNVTQEDAGSYTLHIIKRGDGTGGVTGYFTVTLYSET 145
Query: 68 SKP----TRLRPRPLQDSIQ 83
KP + L PR + ++++
Sbjct: 146 PKPSISSSNLNPREVMEAVR 165
>sp|P11716|RYR1_RABIT Ryanodine receptor 1 OS=Oryctolagus cuniculus GN=RYR1 PE=1 SV=1
Length = 5037
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 462 PSYVMRTHGSRKQQEALKSVTGNCMKKVFEALDTLGSTK----------WRVNKQVLSVL 511
P YV ++ S+ +++A GN + E L+ + K + K +
Sbjct: 2712 PDYVDASYSSKAEKKATVDAEGNFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKI 2771
Query: 512 ESIWVSGGNIAGLVDRNDVLIPEKPLSEDMTEVQKW------------KWSVRKAKKINQ 559
++ W G N+ + + +L P K SE E+ +W +W++ KA++ +
Sbjct: 2772 QNNWSYGENVDEELKTHPMLRPYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEKAREGEE 2831
Query: 560 ERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRG 594
ER ++ K+S + D Y P D G
Sbjct: 2832 ERTEKK--KTRKISQTAQTYDPREGYNPQPPDLSG 2864
>sp|Q839A8|SYK_ENTFA Lysine--tRNA ligase OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=lysS PE=3 SV=1
Length = 498
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 21/196 (10%)
Query: 631 LKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACI 690
L++HL L GG+EK+ GR+ E D+ NP L A + +
Sbjct: 237 LELHLKRLIVGGMEKVYEIGRVFRNEG-----IDTTHNP---EFTMLEAYTAYTDYQDVM 288
Query: 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEI 750
+L+E + ++ V+ I DG LG V+ V + D + E+
Sbjct: 289 DLTEGIIRNAAEKVLGTTDITYDGQA------VDLGSPFKRLHMVDAVKEQTGVDFWQEM 342
Query: 751 AVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLVKQTVM--TSVYGVTFVGAREQIK 808
+ + ++ N + + A+ +I++ V+ T+ T +YG A +
Sbjct: 343 TIEEARALAKEHNVEIT---DAMTVGHIINEFFETFVEDTLQQPTFIYGHPV--AVSPLA 397
Query: 809 RRLEEKGHITDDRQLF 824
++ E G TD +LF
Sbjct: 398 KKNPEDGRFTDRFELF 413
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,351,297
Number of Sequences: 539616
Number of extensions: 12791583
Number of successful extensions: 45665
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 44984
Number of HSP's gapped (non-prelim): 440
length of query: 835
length of database: 191,569,459
effective HSP length: 126
effective length of query: 709
effective length of database: 123,577,843
effective search space: 87616690687
effective search space used: 87616690687
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)