Query 003265
Match_columns 835
No_of_seqs 494 out of 4349
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 20:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6E-95 1.3E-99 836.8 46.2 788 4-826 54-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.1E-62 1.7E-66 594.7 48.0 629 96-793 185-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.2E-43 1.6E-47 367.7 17.6 269 100-371 1-284 (287)
4 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.9E-26 240.7 19.7 323 444-793 589-948 (1153)
5 KOG0444 Cytoskeletal regulator 99.9 2.9E-24 6.3E-29 224.6 -4.4 327 424-793 34-380 (1255)
6 PLN00113 leucine-rich repeat r 99.9 1.1E-21 2.4E-26 241.8 16.5 330 442-808 116-462 (968)
7 PLN00113 leucine-rich repeat r 99.9 1.3E-21 2.8E-26 241.2 16.9 328 445-807 70-413 (968)
8 KOG0444 Cytoskeletal regulator 99.8 4E-22 8.6E-27 208.7 -1.4 292 439-781 98-393 (1255)
9 KOG4194 Membrane glycoprotein 99.8 2.3E-21 5E-26 202.0 2.9 313 446-806 127-447 (873)
10 KOG4194 Membrane glycoprotein 99.8 1.1E-20 2.4E-25 197.0 3.3 318 441-808 99-426 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 3E-19 6.6E-24 178.5 -4.9 321 439-786 201-539 (565)
12 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.3E-23 192.2 -2.5 236 541-809 241-487 (1081)
13 KOG0472 Leucine-rich repeat pr 99.6 2.7E-18 5.8E-23 171.8 -7.2 262 467-808 46-307 (565)
14 PRK15387 E3 ubiquitin-protein 99.6 2.2E-14 4.7E-19 164.1 14.8 254 423-761 202-456 (788)
15 PRK15387 E3 ubiquitin-protein 99.5 9.1E-14 2E-18 159.0 13.3 257 445-789 202-458 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 6.6E-14 1.4E-18 161.4 11.6 118 445-579 200-317 (754)
17 KOG4658 Apoptotic ATPase [Sign 99.5 5.6E-14 1.2E-18 164.4 9.2 324 425-794 526-866 (889)
18 KOG0618 Serine/threonine phosp 99.5 7.7E-15 1.7E-19 162.3 -0.1 284 445-781 220-504 (1081)
19 KOG0617 Ras suppressor protein 99.4 1.3E-15 2.9E-20 135.0 -6.3 45 505-550 67-111 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 2.4E-13 5.3E-18 156.7 9.6 248 445-761 179-426 (754)
21 PRK04841 transcriptional regul 99.4 3.6E-11 7.8E-16 147.9 25.9 287 96-416 15-332 (903)
22 KOG0617 Ras suppressor protein 99.4 2.5E-14 5.5E-19 127.0 -2.0 134 438-579 50-186 (264)
23 PF01637 Arch_ATPase: Archaeal 99.3 1.4E-11 3E-16 125.5 10.1 195 97-298 1-233 (234)
24 PRK00411 cdc6 cell division co 99.2 4.5E-10 9.8E-15 123.8 20.5 292 96-397 31-358 (394)
25 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.8E-17 131.5 0.2 146 425-577 49-199 (498)
26 TIGR03015 pepcterm_ATPase puta 99.2 1E-09 2.2E-14 114.2 21.8 182 114-303 41-242 (269)
27 cd00116 LRR_RI Leucine-rich re 99.2 6.6E-12 1.4E-16 134.6 3.9 35 690-725 220-261 (319)
28 COG2909 MalT ATP-dependent tra 99.2 2.3E-09 4.9E-14 119.4 22.2 288 96-415 20-337 (894)
29 KOG4237 Extracellular matrix p 99.2 2.4E-12 5.3E-17 129.6 -0.8 109 466-580 67-178 (498)
30 TIGR02928 orc1/cdc6 family rep 99.1 6.7E-09 1.4E-13 113.3 23.7 294 96-397 16-350 (365)
31 TIGR00635 ruvB Holliday juncti 99.1 5.9E-10 1.3E-14 118.1 14.5 268 96-397 5-289 (305)
32 cd00116 LRR_RI Leucine-rich re 99.1 9.5E-11 2E-15 125.6 7.7 116 631-760 193-317 (319)
33 PRK00080 ruvB Holliday junctio 99.1 8.5E-10 1.8E-14 117.6 14.5 265 96-397 26-310 (328)
34 PF05729 NACHT: NACHT domain 99.0 2.1E-09 4.6E-14 102.9 11.9 143 117-268 1-164 (166)
35 COG3899 Predicted ATPase [Gene 99.0 8.5E-09 1.8E-13 121.9 17.4 301 96-414 1-384 (849)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.5E-14 102.8 6.3 132 436-575 11-149 (175)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.6E-14 101.8 5.0 118 453-579 6-126 (175)
38 KOG0532 Leucine-rich repeat (L 98.9 8.9E-11 1.9E-15 123.8 -3.9 166 447-641 78-244 (722)
39 PRK06893 DNA replication initi 98.9 1.3E-08 2.7E-13 102.3 11.1 154 115-301 38-205 (229)
40 KOG4341 F-box protein containi 98.8 3.4E-10 7.4E-15 115.4 -1.3 293 466-792 138-443 (483)
41 KOG4341 F-box protein containi 98.8 2.5E-10 5.5E-15 116.3 -2.2 299 445-781 139-459 (483)
42 KOG3207 Beta-tubulin folding c 98.8 1.3E-09 2.7E-14 111.9 1.4 212 463-725 118-337 (505)
43 PTZ00112 origin recognition co 98.8 2.2E-07 4.7E-12 104.7 18.9 207 96-304 756-987 (1164)
44 COG2256 MGS1 ATPase related to 98.8 5.1E-08 1.1E-12 100.0 12.6 168 96-294 25-207 (436)
45 TIGR03420 DnaA_homol_Hda DnaA 98.8 5.1E-08 1.1E-12 98.5 11.8 170 100-302 22-204 (226)
46 KOG0532 Leucine-rich repeat (L 98.7 7.9E-10 1.7E-14 116.8 -3.0 189 449-669 55-246 (722)
47 KOG3207 Beta-tubulin folding c 98.7 2.8E-09 6.1E-14 109.4 0.9 65 513-579 117-185 (505)
48 PRK13342 recombination factor 98.7 1.9E-07 4.1E-12 102.7 14.4 175 96-301 13-198 (413)
49 COG1474 CDC6 Cdc6-related prot 98.7 5.3E-06 1.1E-10 88.4 24.5 200 96-300 18-239 (366)
50 KOG1259 Nischarin, modulator o 98.7 1.2E-08 2.5E-13 99.5 3.3 227 487-761 179-410 (490)
51 KOG1909 Ran GTPase-activating 98.6 1.1E-08 2.5E-13 102.3 2.1 248 463-761 27-309 (382)
52 KOG2120 SCF ubiquitin ligase, 98.6 2.3E-09 5E-14 104.4 -2.8 184 518-761 185-374 (419)
53 KOG2028 ATPase related to the 98.6 5.5E-07 1.2E-11 90.4 13.7 172 96-293 139-330 (554)
54 KOG2120 SCF ubiquitin ligase, 98.6 2.2E-09 4.7E-14 104.6 -3.3 137 631-787 234-375 (419)
55 PF05496 RuvB_N: Holliday junc 98.6 6.4E-07 1.4E-11 86.0 13.2 176 96-305 25-227 (233)
56 PRK04195 replication factor C 98.6 3.2E-06 6.9E-11 95.0 20.9 239 96-371 15-271 (482)
57 KOG1259 Nischarin, modulator o 98.6 1.6E-08 3.6E-13 98.5 2.0 110 489-623 283-392 (490)
58 COG4886 Leucine-rich repeat (L 98.6 7.7E-08 1.7E-12 106.2 6.9 179 486-728 112-291 (394)
59 PRK12402 replication factor C 98.6 1.1E-06 2.4E-11 94.8 15.5 193 96-298 16-225 (337)
60 PRK08727 hypothetical protein; 98.6 7.1E-07 1.5E-11 89.8 12.9 168 96-296 20-201 (233)
61 PRK05564 DNA polymerase III su 98.6 1.6E-06 3.5E-11 91.8 16.2 177 96-299 5-190 (313)
62 PRK07003 DNA polymerase III su 98.5 1.5E-06 3.2E-11 97.8 16.0 195 96-302 17-224 (830)
63 PF13173 AAA_14: AAA domain 98.5 2.7E-07 5.9E-12 83.5 8.2 120 116-259 2-127 (128)
64 COG4886 Leucine-rich repeat (L 98.5 7.3E-08 1.6E-12 106.4 4.3 122 448-577 97-220 (394)
65 PRK14949 DNA polymerase III su 98.5 1.5E-06 3.3E-11 99.7 14.7 179 96-299 17-220 (944)
66 PF13855 LRR_8: Leucine rich r 98.5 9.5E-08 2.1E-12 73.6 3.6 58 519-577 2-60 (61)
67 cd00009 AAA The AAA+ (ATPases 98.5 9.3E-07 2E-11 82.5 11.0 124 98-238 1-131 (151)
68 PRK12323 DNA polymerase III su 98.5 1.4E-06 3E-11 96.7 13.7 193 96-299 17-225 (700)
69 PLN03025 replication factor C 98.5 1.3E-06 2.9E-11 92.7 12.8 178 96-295 14-196 (319)
70 cd01128 rho_factor Transcripti 98.4 2.6E-07 5.7E-12 92.8 6.3 91 114-208 14-113 (249)
71 PRK14960 DNA polymerase III su 98.4 2.9E-06 6.2E-11 94.6 14.8 189 96-297 16-217 (702)
72 PRK14961 DNA polymerase III su 98.4 6.2E-06 1.3E-10 89.0 17.1 190 96-298 17-219 (363)
73 PRK00440 rfc replication facto 98.4 5.5E-06 1.2E-10 88.6 16.4 179 96-298 18-202 (319)
74 PRK14963 DNA polymerase III su 98.4 4.7E-06 1E-10 92.8 16.0 190 96-296 15-214 (504)
75 PF13191 AAA_16: AAA ATPase do 98.4 7E-07 1.5E-11 87.1 8.2 45 96-140 1-48 (185)
76 PRK14962 DNA polymerase III su 98.4 6.1E-06 1.3E-10 91.1 16.2 185 96-303 15-223 (472)
77 PRK06645 DNA polymerase III su 98.4 5.6E-06 1.2E-10 91.8 15.8 192 96-296 22-226 (507)
78 PRK08084 DNA replication initi 98.4 2.7E-06 5.9E-11 85.7 12.0 171 97-300 25-210 (235)
79 PF13401 AAA_22: AAA domain; P 98.4 7.8E-07 1.7E-11 81.2 7.2 116 116-236 4-125 (131)
80 PTZ00202 tuzin; Provisional 98.4 6.7E-06 1.4E-10 86.3 14.5 158 95-267 262-434 (550)
81 PRK09087 hypothetical protein; 98.4 3.8E-06 8.3E-11 83.7 12.4 144 115-300 43-196 (226)
82 PRK14956 DNA polymerase III su 98.4 5.2E-06 1.1E-10 90.0 14.2 191 96-295 19-218 (484)
83 PRK07471 DNA polymerase III su 98.4 1.4E-05 3.1E-10 85.3 17.2 196 96-300 20-239 (365)
84 PRK09112 DNA polymerase III su 98.4 7.1E-06 1.5E-10 87.1 14.7 195 96-300 24-241 (351)
85 TIGR02903 spore_lon_C ATP-depe 98.3 1.3E-05 2.9E-10 91.9 17.6 201 96-302 155-398 (615)
86 PRK14957 DNA polymerase III su 98.3 1E-05 2.2E-10 90.3 16.0 182 96-301 17-223 (546)
87 PRK13341 recombination factor 98.3 5.9E-06 1.3E-10 95.7 14.1 165 96-294 29-212 (725)
88 PRK14964 DNA polymerase III su 98.3 1E-05 2.3E-10 88.8 15.4 178 96-296 14-214 (491)
89 PRK05642 DNA replication initi 98.3 5.1E-06 1.1E-10 83.6 12.1 154 116-302 45-211 (234)
90 PRK07940 DNA polymerase III su 98.3 1.5E-05 3.2E-10 86.0 15.9 185 96-299 6-213 (394)
91 TIGR02397 dnaX_nterm DNA polym 98.3 2.2E-05 4.8E-10 85.3 17.4 181 96-300 15-219 (355)
92 PRK14951 DNA polymerase III su 98.3 1.4E-05 3.1E-10 90.3 15.9 194 96-298 17-224 (618)
93 PF00308 Bac_DnaA: Bacterial d 98.3 6.6E-06 1.4E-10 81.7 11.9 181 98-300 12-209 (219)
94 PRK09376 rho transcription ter 98.3 1.6E-06 3.4E-11 90.6 7.7 98 107-208 159-266 (416)
95 PRK08691 DNA polymerase III su 98.3 7.1E-06 1.5E-10 92.4 13.2 175 96-298 17-219 (709)
96 PRK14958 DNA polymerase III su 98.3 1.1E-05 2.3E-10 90.3 14.3 180 96-298 17-219 (509)
97 PRK08903 DnaA regulatory inact 98.3 7.3E-06 1.6E-10 82.7 11.8 172 96-304 19-204 (227)
98 TIGR00678 holB DNA polymerase 98.3 2.3E-05 5.1E-10 76.3 14.9 160 106-295 3-187 (188)
99 PF14516 AAA_35: AAA-like doma 98.3 0.00031 6.7E-09 74.7 24.5 200 96-306 12-246 (331)
100 PRK05896 DNA polymerase III su 98.3 1.6E-05 3.5E-10 88.7 15.1 193 96-301 17-223 (605)
101 PRK07994 DNA polymerase III su 98.3 1E-05 2.2E-10 91.7 13.7 191 96-299 17-220 (647)
102 TIGR01242 26Sp45 26S proteasom 98.2 1.3E-05 2.9E-10 86.7 13.1 170 96-293 123-328 (364)
103 PLN03150 hypothetical protein; 98.2 3.4E-06 7.4E-11 97.6 8.1 104 467-577 419-526 (623)
104 PRK14970 DNA polymerase III su 98.2 4.7E-05 1E-09 82.8 16.5 178 96-296 18-206 (367)
105 PRK14955 DNA polymerase III su 98.2 1.2E-05 2.5E-10 87.9 11.7 197 96-298 17-227 (397)
106 KOG0989 Replication factor C, 98.2 1E-05 2.2E-10 80.3 9.6 187 95-299 36-231 (346)
107 PF13855 LRR_8: Leucine rich r 98.1 1.7E-06 3.6E-11 66.6 3.3 57 490-551 1-59 (61)
108 KOG1859 Leucine-rich repeat pr 98.1 1.3E-07 2.9E-12 102.9 -3.9 125 467-616 165-290 (1096)
109 PRK07764 DNA polymerase III su 98.1 4.2E-05 9E-10 89.9 16.2 194 96-302 16-225 (824)
110 PRK14969 DNA polymerase III su 98.1 2.9E-05 6.3E-10 87.4 14.4 181 96-299 17-221 (527)
111 TIGR00767 rho transcription te 98.1 1E-05 2.2E-10 85.2 9.6 93 114-208 166-265 (415)
112 PRK09111 DNA polymerase III su 98.1 4.4E-05 9.6E-10 86.6 15.3 194 96-299 25-233 (598)
113 PRK14959 DNA polymerase III su 98.1 4.3E-05 9.3E-10 85.9 14.8 195 96-303 17-225 (624)
114 COG3903 Predicted ATPase [Gene 98.1 8.4E-06 1.8E-10 84.7 8.5 278 115-414 13-312 (414)
115 PRK15386 type III secretion pr 98.1 5.3E-06 1.1E-10 87.8 7.0 62 464-535 50-112 (426)
116 PRK14087 dnaA chromosomal repl 98.1 1.8E-05 3.9E-10 87.3 11.2 169 116-302 141-322 (450)
117 PRK14952 DNA polymerase III su 98.1 6.4E-05 1.4E-09 84.8 15.7 196 96-303 14-224 (584)
118 PRK07133 DNA polymerase III su 98.1 7.7E-05 1.7E-09 85.2 16.4 187 96-300 19-221 (725)
119 PRK08451 DNA polymerase III su 98.1 8.3E-05 1.8E-09 82.6 16.3 177 96-299 15-218 (535)
120 PRK14954 DNA polymerase III su 98.1 7.8E-05 1.7E-09 84.8 16.3 198 96-299 17-229 (620)
121 PF12799 LRR_4: Leucine Rich r 98.1 4.1E-06 8.9E-11 58.9 3.8 40 519-559 2-41 (44)
122 KOG0531 Protein phosphatase 1, 98.1 6E-07 1.3E-11 99.2 -0.9 85 486-579 91-175 (414)
123 KOG2227 Pre-initiation complex 98.1 0.00031 6.7E-09 74.0 18.8 214 96-314 151-385 (529)
124 PF05621 TniB: Bacterial TniB 98.0 0.00012 2.7E-09 74.0 15.3 191 104-299 46-261 (302)
125 KOG2982 Uncharacterized conser 98.0 4.2E-06 9.1E-11 82.1 4.4 205 487-722 68-287 (418)
126 PLN03150 hypothetical protein; 98.0 9.8E-06 2.1E-10 93.9 8.2 83 491-579 419-503 (623)
127 PRK14971 DNA polymerase III su 98.0 0.0001 2.2E-09 84.3 16.0 177 96-296 18-219 (614)
128 TIGR02881 spore_V_K stage V sp 98.0 6.6E-05 1.4E-09 77.3 13.1 154 96-271 7-195 (261)
129 KOG0531 Protein phosphatase 1, 98.0 7.5E-07 1.6E-11 98.5 -1.4 194 487-724 69-265 (414)
130 PRK14088 dnaA chromosomal repl 98.0 4.6E-05 9.9E-10 84.1 12.5 161 116-298 130-304 (440)
131 TIGR02880 cbbX_cfxQ probable R 98.0 0.00012 2.7E-09 75.8 15.0 132 118-269 60-210 (284)
132 PRK03992 proteasome-activating 98.0 0.00011 2.4E-09 80.0 14.8 169 96-292 132-336 (389)
133 PRK06305 DNA polymerase III su 98.0 0.00018 3.9E-09 79.5 16.6 180 96-299 18-223 (451)
134 PRK14953 DNA polymerase III su 98.0 0.00021 4.6E-09 79.5 17.2 176 96-299 17-220 (486)
135 TIGR03345 VI_ClpV1 type VI sec 98.0 8.8E-05 1.9E-09 88.3 14.9 179 95-292 187-389 (852)
136 CHL00181 cbbX CbbX; Provisiona 98.0 0.00016 3.5E-09 74.9 14.9 155 96-270 24-212 (287)
137 KOG2982 Uncharacterized conser 98.0 3.3E-06 7.1E-11 82.9 1.9 210 491-768 46-267 (418)
138 PRK06647 DNA polymerase III su 97.9 0.00021 4.5E-09 80.9 16.3 190 96-298 17-219 (563)
139 PRK11331 5-methylcytosine-spec 97.9 0.00014 3.1E-09 78.1 14.0 106 96-209 176-283 (459)
140 PRK14950 DNA polymerase III su 97.9 0.00022 4.8E-09 81.9 16.5 192 96-299 17-221 (585)
141 TIGR00362 DnaA chromosomal rep 97.9 8.6E-05 1.9E-09 81.9 12.8 161 116-298 136-309 (405)
142 PRK07399 DNA polymerase III su 97.9 0.00081 1.8E-08 70.6 19.1 197 96-300 5-222 (314)
143 PRK14948 DNA polymerase III su 97.9 0.0003 6.5E-09 80.6 17.0 194 96-300 17-223 (620)
144 PRK00149 dnaA chromosomal repl 97.9 7.8E-05 1.7E-09 83.2 12.1 162 116-299 148-322 (450)
145 PF05673 DUF815: Protein of un 97.9 0.00049 1.1E-08 67.5 15.5 45 96-140 28-76 (249)
146 TIGR02639 ClpA ATP-dependent C 97.9 0.00013 2.7E-09 86.4 13.9 155 96-267 183-358 (731)
147 PRK15386 type III secretion pr 97.9 4.7E-05 1E-09 80.7 9.0 73 486-575 48-121 (426)
148 PRK06620 hypothetical protein; 97.9 5.9E-05 1.3E-09 74.5 9.3 135 117-298 45-188 (214)
149 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.1E-10 57.0 2.6 41 490-535 1-41 (44)
150 KOG1909 Ran GTPase-activating 97.9 4.8E-06 1E-10 83.8 1.4 162 444-618 30-226 (382)
151 PRK12422 chromosomal replicati 97.9 0.00014 3.1E-09 80.0 12.9 153 116-292 141-306 (445)
152 PRK05563 DNA polymerase III su 97.8 0.00044 9.5E-09 78.6 16.3 188 96-296 17-217 (559)
153 PRK14965 DNA polymerase III su 97.8 0.00027 5.8E-09 80.8 14.4 193 96-301 17-223 (576)
154 PTZ00361 26 proteosome regulat 97.8 0.00015 3.1E-09 79.1 11.6 171 96-293 184-389 (438)
155 KOG2543 Origin recognition com 97.8 0.00017 3.7E-09 73.9 10.9 165 96-267 7-193 (438)
156 COG2255 RuvB Holliday junction 97.8 0.0004 8.8E-09 68.4 12.9 175 96-304 27-228 (332)
157 CHL00095 clpC Clp protease ATP 97.8 0.00025 5.4E-09 85.0 13.8 154 96-266 180-353 (821)
158 PHA02544 44 clamp loader, smal 97.7 0.00019 4.1E-09 76.5 11.4 144 96-265 22-171 (316)
159 PTZ00454 26S protease regulato 97.7 0.00064 1.4E-08 73.7 15.3 171 96-293 146-351 (398)
160 PRK14086 dnaA chromosomal repl 97.7 0.00028 6E-09 79.1 12.6 159 117-297 315-486 (617)
161 KOG3665 ZYG-1-like serine/thre 97.7 2.8E-05 6E-10 89.8 4.6 108 465-578 121-232 (699)
162 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00036 7.9E-09 83.9 13.8 154 96-267 174-349 (852)
163 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00071 1.5E-08 73.4 14.0 185 96-305 191-412 (802)
164 TIGR03689 pup_AAA proteasome A 97.7 0.001 2.3E-08 73.6 15.9 157 96-269 183-380 (512)
165 PRK10865 protein disaggregatio 97.7 0.00033 7.2E-09 83.8 12.8 153 96-267 179-354 (857)
166 COG1373 Predicted ATPase (AAA+ 97.7 0.00054 1.2E-08 74.5 13.3 165 99-299 21-192 (398)
167 PRK05707 DNA polymerase III su 97.6 0.0013 2.9E-08 69.3 15.8 95 197-299 105-203 (328)
168 COG1222 RPT1 ATP-dependent 26S 97.6 0.00089 1.9E-08 68.3 13.2 179 98-304 154-372 (406)
169 KOG1859 Leucine-rich repeat pr 97.6 4.3E-06 9.3E-11 91.5 -3.3 177 439-642 104-290 (1096)
170 PRK11034 clpA ATP-dependent Cl 97.6 0.00034 7.3E-09 81.7 11.2 155 96-267 187-362 (758)
171 KOG4579 Leucine-rich repeat (L 97.6 1.2E-05 2.7E-10 69.8 -0.4 92 463-560 50-141 (177)
172 COG0593 DnaA ATPase involved i 97.6 0.0005 1.1E-08 73.2 11.0 141 115-275 112-265 (408)
173 COG3267 ExeA Type II secretory 97.6 0.004 8.8E-08 60.9 16.1 179 113-301 48-247 (269)
174 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.4E-10 88.6 2.6 128 444-579 122-263 (699)
175 KOG1644 U2-associated snRNP A' 97.5 0.00011 2.4E-09 68.6 4.6 107 464-577 40-151 (233)
176 TIGR01241 FtsH_fam ATP-depende 97.5 0.0018 3.9E-08 73.3 15.5 177 96-299 56-267 (495)
177 PRK08116 hypothetical protein; 97.5 0.00014 3.1E-09 74.5 6.0 102 117-236 115-220 (268)
178 KOG1947 Leucine rich repeat pr 97.5 3.9E-05 8.5E-10 87.4 1.1 86 488-577 186-280 (482)
179 KOG4579 Leucine-rich repeat (L 97.5 2.4E-05 5.2E-10 68.1 -0.5 107 468-580 29-137 (177)
180 PRK08769 DNA polymerase III su 97.4 0.0041 8.8E-08 65.1 15.9 181 102-300 11-209 (319)
181 CHL00176 ftsH cell division pr 97.4 0.0036 7.7E-08 72.0 16.2 170 96-292 184-387 (638)
182 PRK06871 DNA polymerase III su 97.4 0.006 1.3E-07 63.9 16.4 177 103-297 10-201 (325)
183 TIGR00602 rad24 checkpoint pro 97.4 0.00064 1.4E-08 77.3 9.9 45 96-140 85-134 (637)
184 PRK08118 topology modulation p 97.4 0.00013 2.8E-09 69.2 3.5 36 117-152 2-37 (167)
185 PRK12608 transcription termina 97.4 0.0012 2.5E-08 69.5 10.7 103 104-208 120-230 (380)
186 PRK08058 DNA polymerase III su 97.4 0.0041 8.9E-08 66.1 15.0 161 96-266 6-181 (329)
187 smart00382 AAA ATPases associa 97.3 0.00076 1.6E-08 62.1 8.4 88 116-210 2-90 (148)
188 PF10443 RNA12: RNA12 protein; 97.3 0.014 3E-07 62.2 18.3 199 100-310 1-289 (431)
189 PRK12377 putative replication 97.3 0.00069 1.5E-08 68.2 8.0 74 115-208 100-173 (248)
190 KOG1514 Origin recognition com 97.3 0.011 2.4E-07 65.8 17.3 201 96-303 397-625 (767)
191 KOG2228 Origin recognition com 97.3 0.0025 5.4E-08 64.5 11.1 167 96-267 25-219 (408)
192 KOG0741 AAA+-type ATPase [Post 97.3 0.01 2.2E-07 63.6 16.1 145 115-289 537-704 (744)
193 KOG1644 U2-associated snRNP A' 97.3 0.00041 8.8E-09 64.9 5.1 102 445-551 43-150 (233)
194 PF13177 DNA_pol3_delta2: DNA 97.2 0.0031 6.7E-08 59.4 11.0 135 99-255 1-162 (162)
195 PF00004 AAA: ATPase family as 97.2 0.00077 1.7E-08 61.2 6.6 22 119-140 1-22 (132)
196 PRK10536 hypothetical protein; 97.2 0.0024 5.3E-08 63.5 10.3 53 96-151 56-108 (262)
197 COG2812 DnaX DNA polymerase II 97.2 0.0019 4.1E-08 71.1 10.1 185 96-293 17-214 (515)
198 PRK07993 DNA polymerase III su 97.2 0.012 2.6E-07 62.4 15.6 178 103-299 10-204 (334)
199 PRK06090 DNA polymerase III su 97.2 0.012 2.7E-07 61.4 15.5 177 102-300 10-202 (319)
200 PF04665 Pox_A32: Poxvirus A32 97.1 0.0011 2.3E-08 65.7 7.1 36 117-155 14-49 (241)
201 PRK06921 hypothetical protein; 97.1 0.00059 1.3E-08 69.9 4.5 39 115-155 116-154 (266)
202 PRK07261 topology modulation p 97.0 0.0018 4E-08 61.6 7.5 66 118-208 2-67 (171)
203 TIGR02639 ClpA ATP-dependent C 97.0 0.0034 7.4E-08 74.4 11.3 100 96-209 455-564 (731)
204 TIGR02640 gas_vesic_GvpN gas v 97.0 0.011 2.4E-07 60.7 13.6 55 103-165 10-64 (262)
205 PRK08181 transposase; Validate 97.0 0.001 2.3E-08 67.7 5.7 77 109-208 101-177 (269)
206 PRK06835 DNA replication prote 97.0 0.00092 2E-08 70.3 5.5 37 116-155 183-219 (329)
207 TIGR01243 CDC48 AAA family ATP 97.0 0.0078 1.7E-07 71.7 13.8 172 96-294 179-382 (733)
208 PF00448 SRP54: SRP54-type pro 97.0 0.003 6.5E-08 61.4 8.2 89 116-207 1-92 (196)
209 PRK10865 protein disaggregatio 96.9 0.0067 1.5E-07 72.8 12.3 45 96-140 569-622 (857)
210 KOG0733 Nuclear AAA ATPase (VC 96.9 0.019 4.1E-07 62.8 14.3 153 115-293 544-718 (802)
211 TIGR00763 lon ATP-dependent pr 96.9 0.0095 2.1E-07 71.2 13.3 45 96-140 321-371 (775)
212 KOG0991 Replication factor C, 96.9 0.0031 6.6E-08 60.3 7.1 45 96-140 28-72 (333)
213 PRK09183 transposase/IS protei 96.9 0.0026 5.6E-08 65.0 7.3 25 116-140 102-126 (259)
214 COG2607 Predicted ATPase (AAA+ 96.8 0.0052 1.1E-07 59.3 8.5 96 96-221 61-165 (287)
215 PRK06964 DNA polymerase III su 96.8 0.047 1E-06 57.8 16.6 92 197-300 131-226 (342)
216 PRK08939 primosomal protein Dn 96.8 0.0037 8E-08 65.3 8.3 116 99-235 135-259 (306)
217 COG0542 clpA ATP-binding subun 96.8 0.0031 6.6E-08 72.4 8.0 103 96-209 492-604 (786)
218 CHL00195 ycf46 Ycf46; Provisio 96.8 0.0093 2E-07 66.3 11.7 172 96-293 229-429 (489)
219 PRK04132 replication factor C 96.8 0.018 3.9E-07 67.7 14.1 156 121-299 569-731 (846)
220 PF07693 KAP_NTPase: KAP famil 96.8 0.023 4.9E-07 60.9 14.1 40 101-140 2-44 (325)
221 COG0542 clpA ATP-binding subun 96.8 0.0088 1.9E-07 68.8 11.1 154 96-266 171-345 (786)
222 PRK06526 transposase; Provisio 96.7 0.0016 3.4E-08 66.2 4.6 26 115-140 97-122 (254)
223 TIGR01243 CDC48 AAA family ATP 96.7 0.027 5.8E-07 67.2 15.7 170 96-293 454-657 (733)
224 PF13207 AAA_17: AAA domain; P 96.7 0.0012 2.7E-08 58.9 3.5 23 118-140 1-23 (121)
225 PRK10787 DNA-binding ATP-depen 96.7 0.009 1.9E-07 70.7 11.5 45 96-140 323-373 (784)
226 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0021 4.4E-08 67.5 5.5 45 96-140 52-102 (361)
227 PRK09361 radB DNA repair and r 96.7 0.0067 1.5E-07 61.0 8.9 84 115-207 22-116 (225)
228 KOG1947 Leucine rich repeat pr 96.7 0.00039 8.4E-09 79.2 -0.2 112 519-644 189-308 (482)
229 KOG1969 DNA replication checkp 96.7 0.004 8.6E-08 69.4 7.3 72 115-209 325-398 (877)
230 KOG0731 AAA+-type ATPase conta 96.7 0.028 6E-07 64.3 14.0 173 96-296 312-521 (774)
231 PF02562 PhoH: PhoH-like prote 96.6 0.0034 7.3E-08 60.8 5.8 52 100-154 5-56 (205)
232 COG1484 DnaC DNA replication p 96.6 0.0086 1.9E-07 60.9 9.1 74 115-208 104-177 (254)
233 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0068 1.5E-07 72.6 9.6 45 96-140 567-620 (852)
234 PRK07952 DNA replication prote 96.6 0.014 3.1E-07 58.6 10.4 88 103-209 84-173 (244)
235 KOG0730 AAA+-type ATPase [Post 96.6 0.024 5.3E-07 62.8 12.7 161 98-283 437-631 (693)
236 COG1223 Predicted ATPase (AAA+ 96.6 0.071 1.5E-06 52.2 14.3 169 96-292 122-318 (368)
237 TIGR03346 chaperone_ClpB ATP-d 96.6 0.0092 2E-07 72.0 10.2 59 96-157 566-633 (852)
238 PRK04296 thymidine kinase; Pro 96.6 0.0024 5.2E-08 62.0 4.3 113 117-238 3-117 (190)
239 PF08423 Rad51: Rad51; InterP 96.6 0.0082 1.8E-07 61.2 8.4 91 115-207 37-142 (256)
240 CHL00095 clpC Clp protease ATP 96.6 0.0061 1.3E-07 73.2 8.6 103 96-209 510-622 (821)
241 TIGR02237 recomb_radB DNA repa 96.5 0.0079 1.7E-07 59.7 7.9 88 115-207 11-106 (209)
242 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.012 2.5E-07 59.7 9.2 92 115-208 18-125 (235)
243 COG0470 HolB ATPase involved i 96.5 0.014 3.1E-07 62.4 10.4 143 96-257 2-171 (325)
244 PF14532 Sigma54_activ_2: Sigm 96.5 0.0018 3.8E-08 59.4 2.7 43 98-140 1-45 (138)
245 cd01393 recA_like RecA is a b 96.5 0.022 4.7E-07 57.3 10.8 92 115-208 18-124 (226)
246 KOG0652 26S proteasome regulat 96.5 0.045 9.7E-07 53.3 11.9 164 96-284 172-372 (424)
247 cd00983 recA RecA is a bacter 96.5 0.033 7.1E-07 58.2 12.1 86 115-208 54-143 (325)
248 KOG2123 Uncharacterized conser 96.4 0.00056 1.2E-08 67.0 -1.0 101 465-573 18-124 (388)
249 cd01394 radB RadB. The archaea 96.4 0.02 4.3E-07 57.3 10.1 43 115-160 18-60 (218)
250 cd01133 F1-ATPase_beta F1 ATP 96.4 0.0085 1.8E-07 60.7 7.3 92 114-208 67-173 (274)
251 KOG0734 AAA+-type ATPase conta 96.4 0.029 6.3E-07 60.4 11.2 44 97-140 306-361 (752)
252 TIGR02012 tigrfam_recA protein 96.4 0.0097 2.1E-07 62.1 7.6 86 115-208 54-143 (321)
253 cd01120 RecA-like_NTPases RecA 96.3 0.022 4.7E-07 53.8 9.5 39 118-159 1-39 (165)
254 COG0466 Lon ATP-dependent Lon 96.3 0.0048 1E-07 68.9 5.2 45 96-140 324-374 (782)
255 COG5238 RNA1 Ran GTPase-activa 96.3 0.0014 3.1E-08 64.0 1.0 71 653-730 210-288 (388)
256 PRK11034 clpA ATP-dependent Cl 96.3 0.0097 2.1E-07 69.8 7.9 45 96-140 459-512 (758)
257 PF13604 AAA_30: AAA domain; P 96.3 0.0095 2.1E-07 58.2 6.7 36 105-140 7-42 (196)
258 PRK06696 uridine kinase; Valid 96.3 0.0063 1.4E-07 61.0 5.5 42 99-140 2-46 (223)
259 PF00560 LRR_1: Leucine Rich R 96.3 0.0022 4.8E-08 37.4 1.3 21 519-539 1-21 (22)
260 PRK05541 adenylylsulfate kinas 96.3 0.0092 2E-07 57.3 6.4 36 115-153 6-41 (176)
261 PRK06762 hypothetical protein; 96.2 0.049 1.1E-06 51.7 11.3 24 117-140 3-26 (166)
262 KOG0743 AAA+-type ATPase [Post 96.2 0.11 2.4E-06 55.4 14.4 147 117-302 236-412 (457)
263 COG5238 RNA1 Ran GTPase-activa 96.2 0.006 1.3E-07 59.8 4.6 90 630-726 213-315 (388)
264 TIGR02238 recomb_DMC1 meiotic 96.2 0.024 5.3E-07 59.4 9.6 91 115-207 95-200 (313)
265 COG1875 NYN ribonuclease and A 96.2 0.01 2.3E-07 60.9 6.4 39 99-137 228-266 (436)
266 PRK15455 PrkA family serine pr 96.2 0.0061 1.3E-07 67.3 5.0 45 96-140 77-127 (644)
267 PRK11889 flhF flagellar biosyn 96.2 0.038 8.3E-07 58.6 10.7 89 115-208 240-330 (436)
268 PLN00020 ribulose bisphosphate 96.2 0.0098 2.1E-07 62.0 6.3 27 114-140 146-172 (413)
269 KOG2739 Leucine-rich acidic nu 96.2 0.0024 5.2E-08 62.6 1.7 90 486-578 61-155 (260)
270 KOG2035 Replication factor C, 96.2 0.054 1.2E-06 53.6 10.9 180 96-293 14-222 (351)
271 PLN03187 meiotic recombination 96.1 0.03 6.6E-07 59.2 9.9 59 115-175 125-187 (344)
272 PRK09354 recA recombinase A; P 96.1 0.016 3.4E-07 61.0 7.7 86 115-208 59-148 (349)
273 COG0572 Udk Uridine kinase [Nu 96.1 0.016 3.4E-07 56.1 7.1 79 115-199 7-85 (218)
274 cd01131 PilT Pilus retraction 96.1 0.0075 1.6E-07 59.1 4.9 109 117-239 2-111 (198)
275 KOG0744 AAA+-type ATPase [Post 96.1 0.02 4.3E-07 57.8 7.7 81 116-209 177-261 (423)
276 cd03238 ABC_UvrA The excision 96.1 0.025 5.3E-07 53.9 8.2 126 115-252 20-162 (176)
277 PRK00771 signal recognition pa 96.1 0.04 8.6E-07 60.4 10.7 89 115-207 94-184 (437)
278 PF01695 IstB_IS21: IstB-like 96.1 0.02 4.4E-07 54.7 7.6 74 115-209 46-119 (178)
279 KOG0728 26S proteasome regulat 96.1 0.13 2.8E-06 49.9 12.7 167 97-287 148-351 (404)
280 PRK04301 radA DNA repair and r 96.0 0.042 9.2E-07 58.3 10.7 57 115-173 101-161 (317)
281 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.013 2.9E-07 54.2 5.9 116 117-238 3-139 (159)
282 KOG2739 Leucine-rich acidic nu 96.0 0.0034 7.4E-08 61.6 2.1 111 444-559 43-160 (260)
283 TIGR03499 FlhF flagellar biosy 96.0 0.031 6.8E-07 58.0 9.3 88 115-207 193-281 (282)
284 KOG0735 AAA+-type ATPase [Post 96.0 0.02 4.3E-07 63.7 8.0 72 116-208 431-504 (952)
285 TIGR02239 recomb_RAD51 DNA rep 96.0 0.032 7E-07 58.7 9.4 58 115-174 95-156 (316)
286 COG1618 Predicted nucleotide k 96.0 0.008 1.7E-07 54.4 4.1 24 117-140 6-29 (179)
287 PF00485 PRK: Phosphoribulokin 96.0 0.065 1.4E-06 52.3 11.0 82 118-202 1-87 (194)
288 PRK08699 DNA polymerase III su 96.0 0.13 2.7E-06 54.5 13.7 68 198-266 113-184 (325)
289 cd03115 SRP The signal recogni 95.9 0.028 6.1E-07 53.8 8.1 23 118-140 2-24 (173)
290 PHA00729 NTP-binding motif con 95.9 0.011 2.4E-07 58.0 5.2 35 106-140 7-41 (226)
291 PRK10463 hydrogenase nickel in 95.9 0.043 9.3E-07 56.1 9.5 36 105-140 93-128 (290)
292 cd00544 CobU Adenosylcobinamid 95.9 0.013 2.8E-07 55.4 5.4 79 119-207 2-82 (169)
293 PRK06547 hypothetical protein; 95.9 0.012 2.6E-07 55.9 5.2 34 107-140 6-39 (172)
294 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.048 1E-06 55.1 9.8 49 115-168 20-68 (237)
295 KOG2004 Mitochondrial ATP-depe 95.9 0.016 3.4E-07 64.7 6.5 63 96-164 412-480 (906)
296 PRK10733 hflB ATP-dependent me 95.9 0.11 2.4E-06 60.6 14.0 170 96-292 153-356 (644)
297 PTZ00035 Rad51 protein; Provis 95.9 0.058 1.2E-06 57.3 10.6 58 115-174 117-178 (337)
298 TIGR00959 ffh signal recogniti 95.9 0.037 8E-07 60.4 9.3 91 116-208 99-192 (428)
299 KOG0727 26S proteasome regulat 95.8 0.19 4.1E-06 48.9 12.9 44 97-140 157-213 (408)
300 cd01121 Sms Sms (bacterial rad 95.8 0.028 6.1E-07 60.4 8.3 84 115-207 81-167 (372)
301 COG2884 FtsE Predicted ATPase 95.8 0.064 1.4E-06 50.2 9.3 126 114-244 26-204 (223)
302 cd03246 ABCC_Protease_Secretio 95.8 0.027 5.8E-07 53.9 7.3 26 115-140 27-52 (173)
303 COG0194 Gmk Guanylate kinase [ 95.8 0.025 5.4E-07 52.9 6.6 25 116-140 4-28 (191)
304 PRK14722 flhF flagellar biosyn 95.8 0.034 7.3E-07 59.4 8.6 89 115-208 136-225 (374)
305 COG4608 AppF ABC-type oligopep 95.8 0.052 1.1E-06 54.2 9.3 126 114-245 37-178 (268)
306 PRK10867 signal recognition pa 95.8 0.039 8.4E-07 60.3 9.2 26 115-140 99-124 (433)
307 cd03247 ABCC_cytochrome_bd The 95.7 0.041 8.9E-07 52.9 8.3 127 115-251 27-169 (178)
308 PF00006 ATP-synt_ab: ATP synt 95.7 0.069 1.5E-06 52.5 9.8 95 108-207 6-114 (215)
309 COG1102 Cmk Cytidylate kinase 95.7 0.015 3.2E-07 52.7 4.6 44 118-175 2-45 (179)
310 PRK06067 flagellar accessory p 95.7 0.059 1.3E-06 54.5 9.7 88 115-208 24-130 (234)
311 PF13238 AAA_18: AAA domain; P 95.7 0.0088 1.9E-07 54.0 3.3 22 119-140 1-22 (129)
312 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.031 6.8E-07 54.0 7.2 23 118-140 1-23 (183)
313 PRK09270 nucleoside triphospha 95.7 0.082 1.8E-06 53.2 10.4 27 114-140 31-57 (229)
314 KOG0736 Peroxisome assembly fa 95.6 0.072 1.6E-06 60.1 10.4 91 96-209 673-775 (953)
315 cd03214 ABC_Iron-Siderophores_ 95.6 0.034 7.4E-07 53.6 7.2 120 115-239 24-160 (180)
316 TIGR00554 panK_bact pantothena 95.6 0.085 1.8E-06 54.4 10.3 27 114-140 60-86 (290)
317 PRK13531 regulatory ATPase Rav 95.6 0.02 4.2E-07 62.6 5.8 43 96-140 21-63 (498)
318 PRK07667 uridine kinase; Provi 95.6 0.018 4E-07 56.1 5.2 37 104-140 3-41 (193)
319 PF10236 DAP3: Mitochondrial r 95.6 0.39 8.5E-06 50.5 15.4 49 248-296 258-306 (309)
320 cd03223 ABCD_peroxisomal_ALDP 95.6 0.063 1.4E-06 50.9 8.6 125 115-251 26-160 (166)
321 cd01135 V_A-ATPase_B V/A-type 95.5 0.042 9.1E-07 55.6 7.7 95 114-209 67-177 (276)
322 TIGR01650 PD_CobS cobaltochela 95.5 1.1 2.3E-05 46.9 18.1 61 96-164 46-106 (327)
323 cd03216 ABC_Carb_Monos_I This 95.5 0.017 3.7E-07 54.6 4.7 115 115-239 25-144 (163)
324 PRK12727 flagellar biosynthesi 95.5 0.086 1.9E-06 58.3 10.5 89 115-208 349-438 (559)
325 cd03222 ABC_RNaseL_inhibitor T 95.5 0.023 4.9E-07 54.3 5.5 27 114-140 23-49 (177)
326 PF06309 Torsin: Torsin; Inte 95.5 0.024 5.3E-07 49.6 5.1 45 96-140 26-77 (127)
327 PF00154 RecA: recA bacterial 95.5 0.14 3.1E-06 53.3 11.6 87 115-209 52-142 (322)
328 TIGR00064 ftsY signal recognit 95.5 0.08 1.7E-06 54.5 9.7 90 114-207 70-163 (272)
329 cd02019 NK Nucleoside/nucleoti 95.5 0.012 2.7E-07 46.2 3.0 23 118-140 1-23 (69)
330 TIGR02858 spore_III_AA stage I 95.5 0.081 1.8E-06 54.1 9.6 126 105-239 99-231 (270)
331 PLN03186 DNA repair protein RA 95.5 0.096 2.1E-06 55.5 10.5 58 115-174 122-183 (342)
332 COG1066 Sms Predicted ATP-depe 95.4 0.085 1.8E-06 55.5 9.6 95 106-208 81-178 (456)
333 PF12775 AAA_7: P-loop contain 95.4 0.024 5.3E-07 58.2 5.7 88 105-208 23-110 (272)
334 cd03228 ABCC_MRP_Like The MRP 95.4 0.065 1.4E-06 51.1 8.3 127 114-251 26-167 (171)
335 PRK08233 hypothetical protein; 95.4 0.014 3.1E-07 56.3 3.7 25 116-140 3-27 (182)
336 COG0563 Adk Adenylate kinase a 95.4 0.022 4.9E-07 54.3 4.9 23 118-140 2-24 (178)
337 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.058 1.3E-06 49.7 7.5 103 115-240 25-130 (144)
338 TIGR02236 recomb_radA DNA repa 95.4 0.1 2.2E-06 55.3 10.3 57 115-173 94-154 (310)
339 PRK04328 hypothetical protein; 95.4 0.072 1.6E-06 54.2 8.9 42 115-159 22-63 (249)
340 COG1136 SalX ABC-type antimicr 95.3 0.071 1.5E-06 52.3 8.3 66 185-252 147-216 (226)
341 PRK12724 flagellar biosynthesi 95.3 0.063 1.4E-06 57.7 8.4 25 116-140 223-247 (432)
342 PTZ00301 uridine kinase; Provi 95.3 0.016 3.4E-07 57.0 3.7 25 116-140 3-27 (210)
343 TIGR00150 HI0065_YjeE ATPase, 95.3 0.035 7.7E-07 49.7 5.5 39 102-140 6-46 (133)
344 PF13671 AAA_33: AAA domain; P 95.3 0.016 3.4E-07 53.4 3.5 23 118-140 1-23 (143)
345 TIGR00235 udk uridine kinase. 95.3 0.04 8.7E-07 54.5 6.6 26 115-140 5-30 (207)
346 COG0464 SpoVK ATPases of the A 95.2 0.32 6.8E-06 55.4 14.6 134 115-271 275-427 (494)
347 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.11 2.4E-06 52.2 9.9 41 115-158 19-59 (229)
348 TIGR00708 cobA cob(I)alamin ad 95.2 0.08 1.7E-06 49.7 8.0 116 116-237 5-140 (173)
349 PRK07132 DNA polymerase III su 95.2 0.63 1.4E-05 48.4 15.4 166 105-298 6-184 (299)
350 TIGR01425 SRP54_euk signal rec 95.2 0.076 1.6E-06 57.7 8.9 26 115-140 99-124 (429)
351 PRK12678 transcription termina 95.2 0.03 6.4E-07 61.8 5.8 98 107-208 406-513 (672)
352 PRK05439 pantothenate kinase; 95.2 0.14 3.1E-06 53.2 10.6 83 114-199 84-166 (311)
353 PRK05480 uridine/cytidine kina 95.2 0.018 3.9E-07 57.1 3.9 26 115-140 5-30 (209)
354 PRK14974 cell division protein 95.2 0.15 3.2E-06 54.0 10.8 90 115-208 139-232 (336)
355 cd03230 ABC_DR_subfamily_A Thi 95.2 0.036 7.9E-07 53.0 5.9 120 115-241 25-159 (173)
356 KOG1051 Chaperone HSP104 and r 95.2 0.13 2.8E-06 60.4 11.2 100 96-209 563-671 (898)
357 PTZ00088 adenylate kinase 1; P 95.2 0.017 3.8E-07 57.5 3.7 22 119-140 9-30 (229)
358 cd02025 PanK Pantothenate kina 95.2 0.097 2.1E-06 52.1 9.0 23 118-140 1-23 (220)
359 PF07728 AAA_5: AAA domain (dy 95.2 0.042 9.1E-07 50.4 6.0 42 119-166 2-43 (139)
360 COG0468 RecA RecA/RadA recombi 95.2 0.087 1.9E-06 53.7 8.7 86 115-207 59-150 (279)
361 KOG0729 26S proteasome regulat 95.2 0.07 1.5E-06 52.2 7.5 87 98-208 180-280 (435)
362 PF13481 AAA_25: AAA domain; P 95.2 0.083 1.8E-06 51.6 8.4 44 116-159 32-82 (193)
363 TIGR00390 hslU ATP-dependent p 95.2 0.048 1E-06 58.4 6.9 45 96-140 13-71 (441)
364 PF03308 ArgK: ArgK protein; 95.2 0.042 9E-07 54.5 6.0 57 103-160 14-72 (266)
365 KOG3864 Uncharacterized conser 95.1 0.0046 9.9E-08 58.2 -0.6 63 653-723 121-185 (221)
366 PRK12723 flagellar biosynthesi 95.1 0.095 2.1E-06 56.5 9.2 90 115-208 173-264 (388)
367 PRK06002 fliI flagellum-specif 95.1 0.053 1.1E-06 59.0 7.3 90 115-208 164-264 (450)
368 KOG0726 26S proteasome regulat 95.1 0.32 6.9E-06 48.6 11.7 88 97-208 187-288 (440)
369 cd03229 ABC_Class3 This class 95.1 0.034 7.4E-07 53.4 5.2 26 115-140 25-50 (178)
370 cd01129 PulE-GspE PulE/GspE Th 95.1 0.048 1E-06 55.9 6.5 105 98-215 62-166 (264)
371 KOG3347 Predicted nucleotide k 95.0 0.04 8.6E-07 49.1 4.9 70 116-198 7-76 (176)
372 PRK14527 adenylate kinase; Pro 95.0 0.039 8.4E-07 53.8 5.6 26 115-140 5-30 (191)
373 PF07726 AAA_3: ATPase family 95.0 0.014 2.9E-07 51.3 2.1 27 119-148 2-28 (131)
374 TIGR01360 aden_kin_iso1 adenyl 95.0 0.021 4.5E-07 55.6 3.6 26 115-140 2-27 (188)
375 cd01132 F1_ATPase_alpha F1 ATP 95.0 0.078 1.7E-06 53.7 7.7 97 115-216 68-180 (274)
376 COG4088 Predicted nucleotide k 95.0 0.058 1.3E-06 51.0 6.1 24 117-140 2-25 (261)
377 KOG0737 AAA+-type ATPase [Post 95.0 0.14 3.1E-06 53.0 9.4 50 96-148 93-156 (386)
378 PF00910 RNA_helicase: RNA hel 95.0 0.018 3.8E-07 50.0 2.6 22 119-140 1-22 (107)
379 KOG0739 AAA+-type ATPase [Post 95.0 0.12 2.7E-06 51.5 8.6 90 96-209 134-236 (439)
380 PRK03839 putative kinase; Prov 95.0 0.021 4.5E-07 55.1 3.4 23 118-140 2-24 (180)
381 PRK12597 F0F1 ATP synthase sub 95.0 0.049 1.1E-06 59.7 6.6 93 114-208 141-247 (461)
382 PF13245 AAA_19: Part of AAA d 95.0 0.073 1.6E-06 42.6 5.9 26 115-140 9-34 (76)
383 PRK08149 ATP synthase SpaL; Va 94.9 0.092 2E-06 57.0 8.5 90 114-208 149-251 (428)
384 PRK12726 flagellar biosynthesi 94.9 0.14 3E-06 54.3 9.4 89 115-208 205-295 (407)
385 COG1703 ArgK Putative periplas 94.9 0.043 9.4E-07 55.2 5.4 61 105-166 38-100 (323)
386 PRK13765 ATP-dependent proteas 94.9 0.051 1.1E-06 62.4 6.8 74 96-174 32-105 (637)
387 cd03281 ABC_MSH5_euk MutS5 hom 94.9 0.027 5.9E-07 55.7 4.0 121 116-243 29-160 (213)
388 PRK08927 fliI flagellum-specif 94.9 0.083 1.8E-06 57.5 7.9 90 114-208 156-258 (442)
389 cd02027 APSK Adenosine 5'-phos 94.8 0.072 1.6E-06 49.4 6.6 23 118-140 1-23 (149)
390 PRK08972 fliI flagellum-specif 94.8 0.063 1.4E-06 58.1 6.9 90 114-208 160-262 (444)
391 PRK00625 shikimate kinase; Pro 94.8 0.023 5E-07 54.0 3.2 23 118-140 2-24 (173)
392 PF06745 KaiC: KaiC; InterPro 94.8 0.062 1.3E-06 54.0 6.5 87 115-207 18-124 (226)
393 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.036 7.8E-07 52.0 4.6 118 115-241 24-144 (157)
394 PF13504 LRR_7: Leucine rich r 94.8 0.016 3.5E-07 31.2 1.2 16 519-534 2-17 (17)
395 PRK00889 adenylylsulfate kinas 94.8 0.073 1.6E-06 51.0 6.7 25 116-140 4-28 (175)
396 KOG0735 AAA+-type ATPase [Post 94.8 1 2.2E-05 50.9 15.8 90 97-209 669-771 (952)
397 PRK05201 hslU ATP-dependent pr 94.8 0.075 1.6E-06 57.0 7.2 45 96-140 16-74 (443)
398 COG1419 FlhF Flagellar GTP-bin 94.8 0.22 4.8E-06 52.9 10.6 88 115-207 202-290 (407)
399 PRK11823 DNA repair protein Ra 94.8 0.085 1.8E-06 58.5 8.0 84 115-207 79-165 (446)
400 KOG2170 ATPase of the AAA+ sup 94.7 0.073 1.6E-06 53.5 6.5 45 96-140 83-134 (344)
401 PRK04040 adenylate kinase; Pro 94.7 0.028 6E-07 54.4 3.6 25 116-140 2-26 (188)
402 cd02028 UMPK_like Uridine mono 94.7 0.068 1.5E-06 51.3 6.2 23 118-140 1-23 (179)
403 PF13086 AAA_11: AAA domain; P 94.7 0.073 1.6E-06 53.7 6.9 66 103-170 6-75 (236)
404 TIGR03575 selen_PSTK_euk L-ser 94.7 0.1 2.2E-06 55.1 7.8 22 119-140 2-23 (340)
405 cd01136 ATPase_flagellum-secre 94.7 0.11 2.4E-06 54.5 8.1 90 114-208 67-169 (326)
406 TIGR03498 FliI_clade3 flagella 94.7 0.14 3E-06 55.7 9.2 91 114-208 138-240 (418)
407 PRK05703 flhF flagellar biosyn 94.7 0.11 2.5E-06 57.0 8.6 87 116-207 221-308 (424)
408 PRK09280 F0F1 ATP synthase sub 94.7 0.086 1.9E-06 57.6 7.5 93 114-208 142-248 (463)
409 COG3854 SpoIIIAA ncharacterize 94.7 0.097 2.1E-06 50.4 6.8 125 106-241 127-257 (308)
410 PRK06217 hypothetical protein; 94.6 0.053 1.2E-06 52.4 5.4 23 118-140 3-25 (183)
411 PRK05922 type III secretion sy 94.6 0.11 2.4E-06 56.4 8.3 90 114-208 155-257 (434)
412 COG1428 Deoxynucleoside kinase 94.6 0.029 6.4E-07 53.5 3.4 49 116-170 4-52 (216)
413 COG3640 CooC CO dehydrogenase 94.6 0.053 1.2E-06 52.5 5.1 41 118-160 2-42 (255)
414 PRK08533 flagellar accessory p 94.6 0.19 4.1E-06 50.4 9.4 49 115-168 23-71 (230)
415 PRK10875 recD exonuclease V su 94.6 0.095 2.1E-06 60.1 8.1 56 116-171 167-222 (615)
416 PTZ00185 ATPase alpha subunit; 94.6 0.16 3.6E-06 55.6 9.3 93 115-209 188-300 (574)
417 TIGR02655 circ_KaiC circadian 94.6 0.18 4E-06 56.8 10.3 96 106-207 251-362 (484)
418 TIGR02030 BchI-ChlI magnesium 94.6 0.057 1.2E-06 57.1 5.8 45 96-140 5-49 (337)
419 PF00625 Guanylate_kin: Guanyl 94.5 0.053 1.1E-06 52.4 5.1 36 116-154 2-37 (183)
420 PRK14721 flhF flagellar biosyn 94.5 0.2 4.2E-06 54.5 9.8 88 115-207 190-278 (420)
421 PF00158 Sigma54_activat: Sigm 94.5 0.058 1.3E-06 51.0 5.1 44 97-140 1-46 (168)
422 KOG2123 Uncharacterized conser 94.5 0.0062 1.4E-07 59.9 -1.5 104 489-611 18-123 (388)
423 TIGR00382 clpX endopeptidase C 94.5 0.11 2.5E-06 56.2 7.8 45 96-140 78-140 (413)
424 PRK05973 replicative DNA helic 94.5 0.23 4.9E-06 49.6 9.3 49 115-168 63-111 (237)
425 COG1936 Predicted nucleotide k 94.5 0.032 6.8E-07 51.4 3.0 20 118-137 2-21 (180)
426 COG4618 ArpD ABC-type protease 94.5 0.049 1.1E-06 58.7 4.9 26 115-140 361-386 (580)
427 COG0541 Ffh Signal recognition 94.4 1.6 3.4E-05 46.8 15.8 58 115-175 99-157 (451)
428 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.11 2.3E-06 51.1 7.0 25 115-139 25-49 (200)
429 PRK00131 aroK shikimate kinase 94.4 0.037 8E-07 53.0 3.8 25 116-140 4-28 (175)
430 COG0465 HflB ATP-dependent Zn 94.4 0.32 6.9E-06 54.8 11.4 173 96-295 151-357 (596)
431 PF01583 APS_kinase: Adenylyls 94.4 0.047 1E-06 50.4 4.1 25 116-140 2-26 (156)
432 PRK06995 flhF flagellar biosyn 94.4 0.15 3.3E-06 56.3 8.8 87 116-207 256-343 (484)
433 TIGR00416 sms DNA repair prote 94.4 0.14 3.1E-06 56.8 8.6 50 106-158 82-133 (454)
434 cd02024 NRK1 Nicotinamide ribo 94.4 0.03 6.6E-07 53.7 2.9 23 118-140 1-23 (187)
435 TIGR00764 lon_rel lon-related 94.4 0.13 2.8E-06 59.4 8.5 73 96-173 19-91 (608)
436 PRK09099 type III secretion sy 94.4 0.13 2.8E-06 56.2 8.1 91 114-208 161-263 (441)
437 COG3598 RepA RecA-family ATPas 94.4 0.13 2.9E-06 52.1 7.3 59 118-176 91-157 (402)
438 cd01134 V_A-ATPase_A V/A-type 94.3 0.44 9.5E-06 49.9 11.3 58 107-169 147-206 (369)
439 CHL00081 chlI Mg-protoporyphyr 94.3 0.053 1.2E-06 57.4 4.8 45 96-140 18-62 (350)
440 cd03369 ABCC_NFT1 Domain 2 of 94.3 0.25 5.5E-06 48.8 9.5 26 115-140 33-58 (207)
441 PF03205 MobB: Molybdopterin g 94.3 0.058 1.3E-06 49.2 4.5 39 117-157 1-39 (140)
442 cd02023 UMPK Uridine monophosp 94.3 0.031 6.7E-07 54.9 2.9 23 118-140 1-23 (198)
443 COG0467 RAD55 RecA-superfamily 94.3 0.091 2E-06 54.1 6.5 54 114-173 21-74 (260)
444 TIGR01040 V-ATPase_V1_B V-type 94.3 0.14 3E-06 55.7 7.8 94 114-208 139-257 (466)
445 TIGR02322 phosphon_PhnN phosph 94.3 0.039 8.5E-07 53.1 3.5 24 117-140 2-25 (179)
446 COG0003 ArsA Predicted ATPase 94.2 0.067 1.5E-06 55.9 5.3 49 116-167 2-50 (322)
447 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.27 5.7E-06 50.4 9.6 40 115-157 35-74 (259)
448 PRK13407 bchI magnesium chelat 94.2 0.066 1.4E-06 56.5 5.2 45 96-140 9-53 (334)
449 PRK05800 cobU adenosylcobinami 94.2 0.17 3.7E-06 47.9 7.5 83 117-207 2-85 (170)
450 PF00560 LRR_1: Leucine Rich R 94.2 0.02 4.4E-07 33.3 0.8 21 491-515 1-21 (22)
451 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.099 2.2E-06 57.0 6.6 93 114-208 136-242 (449)
452 PRK05986 cob(I)alamin adenolsy 94.2 0.14 3E-06 48.9 6.8 118 115-237 21-158 (191)
453 cd02020 CMPK Cytidine monophos 94.2 0.036 7.9E-07 51.3 2.9 23 118-140 1-23 (147)
454 cd00227 CPT Chloramphenicol (C 94.2 0.046 9.9E-07 52.4 3.7 25 116-140 2-26 (175)
455 PF03193 DUF258: Protein of un 94.2 0.07 1.5E-06 49.5 4.7 35 103-140 25-59 (161)
456 PRK00279 adk adenylate kinase; 94.1 0.069 1.5E-06 53.1 5.1 23 118-140 2-24 (215)
457 PRK06936 type III secretion sy 94.1 0.14 3E-06 55.8 7.5 90 114-208 160-262 (439)
458 KOG0473 Leucine-rich repeat pr 94.1 0.0046 1E-07 59.2 -3.2 84 463-552 39-122 (326)
459 PRK09519 recA DNA recombinatio 94.1 0.16 3.5E-06 59.2 8.5 86 115-208 59-148 (790)
460 PF08477 Miro: Miro-like prote 94.1 0.044 9.5E-07 48.5 3.2 22 119-140 2-23 (119)
461 cd00071 GMPK Guanosine monopho 94.1 0.044 9.6E-07 49.9 3.2 23 118-140 1-23 (137)
462 cd02021 GntK Gluconate kinase 94.1 0.039 8.4E-07 51.4 2.9 23 118-140 1-23 (150)
463 PF08298 AAA_PrkA: PrkA AAA do 94.1 0.083 1.8E-06 55.1 5.5 45 96-140 62-112 (358)
464 cd01130 VirB11-like_ATPase Typ 94.0 0.056 1.2E-06 52.4 4.0 105 104-216 14-118 (186)
465 PRK13947 shikimate kinase; Pro 94.0 0.046 9.9E-07 52.2 3.4 23 118-140 3-25 (171)
466 TIGR01039 atpD ATP synthase, F 94.0 0.15 3.2E-06 55.6 7.5 93 114-208 141-247 (461)
467 TIGR01420 pilT_fam pilus retra 94.0 0.074 1.6E-06 57.0 5.3 110 114-236 120-229 (343)
468 PRK13949 shikimate kinase; Pro 94.0 0.05 1.1E-06 51.6 3.6 24 117-140 2-25 (169)
469 PRK07196 fliI flagellum-specif 94.0 0.18 3.9E-06 54.9 8.1 90 114-208 153-255 (434)
470 KOG0651 26S proteasome regulat 94.0 0.15 3.4E-06 51.4 6.9 26 115-140 165-190 (388)
471 TIGR01351 adk adenylate kinase 94.0 0.077 1.7E-06 52.6 5.0 22 119-140 2-23 (210)
472 PF05970 PIF1: PIF1-like helic 94.0 0.14 3E-06 55.5 7.3 38 103-140 9-46 (364)
473 PF08433 KTI12: Chromatin asso 94.0 0.089 1.9E-06 53.9 5.5 24 117-140 2-25 (270)
474 PF03266 NTPase_1: NTPase; In 93.9 0.045 9.8E-07 51.7 3.1 22 119-140 2-23 (168)
475 COG1224 TIP49 DNA helicase TIP 93.9 0.12 2.7E-06 53.1 6.2 52 95-147 39-95 (450)
476 cd01122 GP4d_helicase GP4d_hel 93.9 0.38 8.2E-06 49.9 10.3 53 115-171 29-81 (271)
477 KOG1532 GTPase XAB1, interacts 93.9 0.062 1.3E-06 53.0 4.0 60 115-175 18-86 (366)
478 PRK06793 fliI flagellum-specif 93.9 0.15 3.3E-06 55.5 7.4 92 114-209 154-257 (432)
479 PRK10416 signal recognition pa 93.9 0.25 5.3E-06 52.1 8.8 26 115-140 113-138 (318)
480 COG0396 sufC Cysteine desulfur 93.9 0.26 5.6E-06 47.8 8.0 66 186-251 150-218 (251)
481 PRK14530 adenylate kinase; Pro 93.9 0.05 1.1E-06 54.2 3.4 24 117-140 4-27 (215)
482 COG1124 DppF ABC-type dipeptid 93.9 0.074 1.6E-06 52.0 4.4 27 114-140 31-57 (252)
483 PRK10751 molybdopterin-guanine 93.8 0.058 1.3E-06 50.8 3.6 26 115-140 5-30 (173)
484 PRK14723 flhF flagellar biosyn 93.8 0.23 5E-06 57.8 9.0 87 116-208 185-273 (767)
485 PRK15453 phosphoribulokinase; 93.8 0.43 9.3E-06 48.5 9.8 26 115-140 4-29 (290)
486 TIGR03263 guanyl_kin guanylate 93.8 0.05 1.1E-06 52.4 3.2 24 117-140 2-25 (180)
487 PRK07721 fliI flagellum-specif 93.8 0.22 4.8E-06 54.6 8.4 90 114-208 156-258 (438)
488 PRK07594 type III secretion sy 93.7 0.16 3.4E-06 55.3 7.2 90 114-208 153-255 (433)
489 TIGR00073 hypB hydrogenase acc 93.7 0.071 1.5E-06 52.7 4.2 32 109-140 15-46 (207)
490 PF02374 ArsA_ATPase: Anion-tr 93.7 0.074 1.6E-06 55.7 4.5 44 117-163 2-45 (305)
491 PF13306 LRR_5: Leucine rich r 93.7 0.23 4.9E-06 44.6 7.2 112 445-568 13-128 (129)
492 TIGR01041 ATP_syn_B_arch ATP s 93.7 0.19 4E-06 55.3 7.7 93 115-208 140-248 (458)
493 COG2274 SunT ABC-type bacterio 93.7 0.24 5.2E-06 57.9 9.0 27 114-140 497-523 (709)
494 CHL00206 ycf2 Ycf2; Provisiona 93.7 0.44 9.6E-06 60.1 11.4 26 115-140 1629-1654(2281)
495 PRK05688 fliI flagellum-specif 93.7 0.18 3.8E-06 55.1 7.4 90 114-208 166-268 (451)
496 smart00534 MUTSac ATPase domai 93.7 0.029 6.3E-07 54.3 1.3 21 118-138 1-21 (185)
497 COG0714 MoxR-like ATPases [Gen 93.7 0.16 3.6E-06 54.2 7.1 63 96-166 25-87 (329)
498 TIGR03496 FliI_clade1 flagella 93.6 0.18 4E-06 54.8 7.4 90 114-208 135-237 (411)
499 PRK12339 2-phosphoglycerate ki 93.6 0.069 1.5E-06 51.9 3.8 25 116-140 3-27 (197)
500 TIGR02868 CydC thiol reductant 93.6 0.22 4.7E-06 57.4 8.5 27 114-140 359-385 (529)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-95 Score=836.79 Aligned_cols=788 Identities=43% Similarity=0.710 Sum_probs=657.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----------------ccccCcccCCccccchHHHHHHHHHHHHHHHHh
Q 003265 4 LDGVQVWVSSVDAVKTGADELITDGSEEIGK----------------LCVGGYCSKNCRSSYKFGKQVARKLRDVETLIA 67 (835)
Q Consensus 4 ~~~v~~Wl~~~~~~~~~~ed~~d~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 67 (835)
...+..|.+.+++++|+++|+++.|..+... -|..++|......-+.+++++.+.++.++.+..
T Consensus 54 ~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~ 133 (889)
T KOG4658|consen 54 LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGS 133 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhcc
Confidence 3567889999999999999999988654322 233355666666777888999999999999988
Q ss_pred cCCeeeeccccCCCCCCCCccccCCCCCcc-cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC
Q 003265 68 EGVFEAVATEVVPERAPEPVADERPTERKV-VGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN 146 (835)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~ 146 (835)
++.+..+... ..+......+|..... ||.+..++++++.|.+++..+++|+||||+||||||++++|+...++.+
T Consensus 134 ~~~~~~~~~~----~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~ 209 (889)
T KOG4658|consen 134 KGVFEVVGES----LDPREKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNH 209 (889)
T ss_pred ccceeccccc----ccchhhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhccc
Confidence 7767655421 1111222222322112 9999999999999999888999999999999999999999999338999
Q ss_pred CCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCC
Q 003265 147 FDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNT 226 (835)
Q Consensus 147 f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~ 226 (835)
||.++||+||+.++...++++|++.++.....+.....++.+..|.+.|++|||+|||||||+..+|+.++.++| ....
T Consensus 210 Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~ 288 (889)
T KOG4658|consen 210 FDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SREN 288 (889)
T ss_pred CceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccC
Confidence 999999999999999999999999998876666666668999999999999999999999999999999999999 7788
Q ss_pred CcEEEEEccchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhc
Q 003265 227 TSKVVFTTRFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAY 305 (835)
Q Consensus 227 ~s~IivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~ 305 (835)
||+|++|||+.+||.. |++...++++.|+++|||.||.+.++......++.++++|++|+++|+|+|||++++|+.|+.
T Consensus 289 g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~ 368 (889)
T KOG4658|consen 289 GSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLAC 368 (889)
T ss_pred CeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcC
Confidence 9999999999999998 888899999999999999999999998866677779999999999999999999999999999
Q ss_pred CccHHHHHh------------hhCCCcchhhHHHHHHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccC-C
Q 003265 306 RKKAEQWRQ------------FAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGE-S 372 (835)
Q Consensus 306 ~~~~~~w~~------------~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~-~ 372 (835)
+.+.++|++ .+++.+.++++|.+||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ .
T Consensus 369 K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~ 447 (889)
T KOG4658|consen 369 KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLD 447 (889)
T ss_pred CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccc
Confidence 999999999 123456899999999999996 99999999999999999999999999999999999 5
Q ss_pred cccchHhhHHHHHHHHHHhccccccc----ccccchhHHHHHHHHHHHhhhhcccccEEEEcCCCcccCCccccCCceEE
Q 003265 373 DRFGAENQGYDILDTLVRACLLEEVE----DDKVKMHDVIRDMALWITCEIEKEKRNFLVCAGAGLKEAPDVKRWENVRR 448 (835)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~~~ll~~~~----~~~~~mhdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 448 (835)
.....+++|++|+++|++++++.... ...|+|||+||++|.|+|++++.+++++++..+.+..+.|....+..+|+
T Consensus 448 ~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr 527 (889)
T KOG4658|consen 448 GGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRR 527 (889)
T ss_pred cccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeE
Confidence 67889999999999999999999873 36899999999999999999888888888888777888899999999999
Q ss_pred EEeeeCCccccCCCCCCCcceEEEeccCCc-c-cccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeec
Q 003265 449 LSLMQNQIETLSEVPKCPHLLTLFLDFNQE-L-KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDIS 526 (835)
Q Consensus 449 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~-~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~ 526 (835)
+++.+|.+..++....+++|++|.+.+|.. + .++..+|..++.|+||||++|. .+..+|.+|+.|. +||||+|+
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~---~l~~LP~~I~~Li-~LryL~L~ 603 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS---SLSKLPSSIGELV-HLRYLDLS 603 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC---ccCcCChHHhhhh-hhhccccc
Confidence 999999999999889999999999998873 4 8889999999999999999987 8999999999999 99999999
Q ss_pred cccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCC
Q 003265 527 LTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKY 606 (835)
Q Consensus 527 ~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 606 (835)
++.++.||.++++|++|.+||+..+..+..+|. +...|++||+|.+....... +...+.++..|++
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~~-------------~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALSN-------------DKLLLKELENLEH 669 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecccccc-------------chhhHHhhhcccc
Confidence 999999999999999999999999977776654 47779999999998765322 4567888899999
Q ss_pred CCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCC
Q 003265 607 LEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRRE 686 (835)
Q Consensus 607 L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 686 (835)
|+.+.+.......+..+.....+.+..+.+.+.++...+.. +.+..+.+|++|.+.+|...+. ...+... ..
T Consensus 670 L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~----~~ 741 (889)
T KOG4658|consen 670 LENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLEELSILDCGISEI-VIEWEES----LI 741 (889)
T ss_pred hhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee---cccccccCcceEEEEcCCCchh-hcccccc----cc
Confidence 99988876655444555555555555666665543333232 4788899999999999987653 2233221 00
Q ss_pred cc-cCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEe-ecCCCCccc
Q 003265 687 PF-VFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTL-DLSRLPILK 764 (835)
Q Consensus 687 ~~-~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~ 764 (835)
.. .|++|..+.+.+|.....+.|....|+|+.|.+..|..++++++....... .......|+++..+ .+.+.+.+.
T Consensus 742 ~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~~l~~~~~l~~l~ 819 (889)
T KOG4658|consen 742 VLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLEGLRMLCSLGGLP 819 (889)
T ss_pred hhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecccccccceeeecCCCCc
Confidence 11 277899999999999999999889999999999999999988764322211 11123456666666 577777778
Q ss_pred cccCCCCCCCCccEEEEecCCCcCCCCCCCCCcc--cc-cceEEechhhhhccCccccccccccc
Q 003265 765 SIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSA--KE-RKFVIRGREDWWNRLQWEDEATQIAF 826 (835)
Q Consensus 765 ~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~--~l-~~~~i~~~~~~~~~l~w~~~~~~~~~ 826 (835)
++......+++|+.+.+. .||+++.+|...... .. ..+....+.+|.+.++|.+++.+..+
T Consensus 820 ~i~~~~l~~~~l~~~~ve-~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 820 QLYWLPLSFLKLEELIVE-ECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeEecccCccchhheehh-cCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 777777788899999999 999999999987655 22 33444467889999999999888766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.1e-62 Score=594.67 Aligned_cols=629 Identities=22% Similarity=0.276 Sum_probs=397.6
Q ss_pred cccchHHHHHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEe---cCc-----------c
Q 003265 96 KVVGLQSQLEQVWTCLV--EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV---SKD-----------L 159 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~-----------~ 159 (835)
.+|||+..++++..+|. .+++++|+|+||||+||||||+++|++. ...|+..+|+.. +.. .
T Consensus 185 ~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred cccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccccc
Confidence 79999999999998885 3578999999999999999999999987 678998888742 111 0
Q ss_pred C-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchh
Q 003265 160 R-LEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFID 238 (835)
Q Consensus 160 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~ 238 (835)
. ...++++++.++..... ..... ...+++.++++|+||||||||+..+|+.+..... ..++||+||||||+..
T Consensus 262 ~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDKH 335 (1153)
T ss_pred chhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcHH
Confidence 1 12344555555432211 01111 2456788999999999999999989988876555 5678999999999999
Q ss_pred hhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHh----
Q 003265 239 VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQ---- 314 (835)
Q Consensus 239 v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~---- 314 (835)
++..++..+.|+++.+++++||+||+++|+... ..+.++.+++++|+++|+|+|||++++|+.|+++ +..+|+.
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 988877888999999999999999999999765 3456789999999999999999999999999985 6789988
Q ss_pred -hhCCCcchhhHHHHHHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHHHHHHhcc
Q 003265 315 -FAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDTLVRACL 393 (835)
Q Consensus 315 -~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~l 393 (835)
.......+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... +.-++.|++++|
T Consensus 414 L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ksL 480 (1153)
T PLN03210 414 LRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKSL 480 (1153)
T ss_pred HHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcCC
Confidence 22344579999999999998746999999999999887554 4677877654432 122889999999
Q ss_pred cccccccccchhHHHHHHHHHHHhhhh--cccccEEEEcCCCcccCCccccCCceEEEEeeeCCccccC----CCCCCCc
Q 003265 394 LEEVEDDKVKMHDVIRDMALWITCEIE--KEKRNFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLS----EVPKCPH 467 (835)
Q Consensus 394 l~~~~~~~~~mhdlv~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~----~~~~~~~ 467 (835)
++.. ...+.|||++|++|+.+++++. +.++.+++...+-...+....+..+++.+++..+.+..+. .+.++++
T Consensus 481 i~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~ 559 (1153)
T PLN03210 481 IHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRN 559 (1153)
T ss_pred EEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcc
Confidence 9875 4679999999999999987742 2344555443211111112223345555555544433221 1245666
Q ss_pred ceEEEeccCC-----c--ccccchhhcCC-CcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcC
Q 003265 468 LLTLFLDFNQ-----E--LKIADGFFQFM-PSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKK 539 (835)
Q Consensus 468 L~~L~l~~~~-----~--~~~~~~~~~~l-~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~ 539 (835)
|+.|.+..+. . ..+|.+ |..+ +.||.|++.++ .+..+|..+ .+. +|++|++++|.+..+|..+..
T Consensus 560 L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~----~l~~lP~~f-~~~-~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 560 LLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY----PLRCMPSNF-RPE-NLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred ccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC----CCCCCCCcC-Ccc-CCcEEECcCcccccccccccc
Confidence 6666554321 0 133333 2232 23555555555 455555443 233 555555555555555555555
Q ss_pred CCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC----------------
Q 003265 540 LVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG---------------- 603 (835)
Q Consensus 540 L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------- 603 (835)
+++|+.|+|++|..+..+|. ++.+++|++|++.+|.... ..+..++.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~---------------~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV---------------ELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc---------------ccchhhhccCCCCEEeCCCCCCcC
Confidence 55555555554444444443 4445555555555443221 11222333
Q ss_pred -------CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccc-------------------
Q 003265 604 -------LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLN------------------- 657 (835)
Q Consensus 604 -------L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~------------------- 657 (835)
+++|+.|+++.+. .+..++. ...+|+.|.++++... .++ ....++
T Consensus 696 ~Lp~~i~l~sL~~L~Lsgc~--~L~~~p~---~~~nL~~L~L~~n~i~-~lP---~~~~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 696 ILPTGINLKSLYRLNLSGCS--RLKSFPD---ISTNISWLDLDETAIE-EFP---SNLRLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred ccCCcCCCCCCCEEeCCCCC--Ccccccc---ccCCcCeeecCCCccc-ccc---ccccccccccccccccchhhccccc
Confidence 4455555554332 1111111 1234455555444321 111 000122
Q ss_pred ------------cccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCc
Q 003265 658 ------------HLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCN 725 (835)
Q Consensus 658 ------------~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 725 (835)
+|+.|++++|..+..+ |.....+++|+.|+|++|.+++.+|....+++|+.|+|++|.
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~l----------P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVEL----------PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCS 836 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCcccc----------ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCC
Confidence 3444444443333322 112235777777777777777777654467777777777777
Q ss_pred cchhhcccC--------ccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCC
Q 003265 726 AMEEIISVG--------KFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPL 793 (835)
Q Consensus 726 ~l~~~~~~~--------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~ 793 (835)
.+..++... .....++++..+..+++|+.|+|.+|++++.++.....+++|+.++++ +|++|+.++.
T Consensus 837 ~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~-~C~~L~~~~l 911 (1153)
T PLN03210 837 RLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS-DCGALTEASW 911 (1153)
T ss_pred ccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC-CCcccccccC
Confidence 666554310 011112333445566777777777777777777666667777777777 7777776655
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.2e-43 Score=367.68 Aligned_cols=269 Identities=34% Similarity=0.636 Sum_probs=220.9
Q ss_pred hHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC
Q 003265 100 LQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD 177 (835)
Q Consensus 100 r~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 177 (835)
||+++++|.+.|.+ ++.++|+|+|+||+||||||++++++. ..+.+|+.++|+.++...+...++.+|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999998 789999999999999999999999985 468999999999999999999999999999987754
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhhccCC-CceEEeccCC
Q 003265 178 SW-KSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSMEA-DRKFLVACLS 255 (835)
Q Consensus 178 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~~-~~~~~l~~L~ 255 (835)
.. ...+.......+.+.|+++++||||||||+...|+.+...++ ....|++||||||+..++..+.. ...+++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 33 556788899999999999999999999999999999888877 66779999999999998876654 6789999999
Q ss_pred hHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHh--------hh---CCCcchhh
Q 003265 256 EKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQ--------FA---GLGKEVYP 324 (835)
Q Consensus 256 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~--------~~---~~~~~~~~ 324 (835)
.++|++||.+.++.......+...+.+++|+++|+|+||||+++|++|+.+.+..+|+. .. +....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999886542234555688999999999999999999999977666777877 11 12467899
Q ss_pred HHHHHHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccC
Q 003265 325 LLKFSYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGE 371 (835)
Q Consensus 325 ~l~~sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~ 371 (835)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|||..
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999 89999999999999999999999999999999986
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.3e-21 Score=240.71 Aligned_cols=323 Identities=19% Similarity=0.240 Sum_probs=191.0
Q ss_pred CceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEE
Q 003265 444 ENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLF 523 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L 523 (835)
.++|.|.+.++.+..+|....+.+|+.|++.++....++.+ +..+++|++|+|+++. .+..+| .++.+. +|++|
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~---~l~~ip-~ls~l~-~Le~L 662 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSK---NLKEIP-DLSMAT-NLETL 662 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCC---CcCcCC-ccccCC-cccEE
Confidence 46777777777777777666667777777775543355554 5667777777777764 456666 366666 77777
Q ss_pred eeccc-cccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcc----cccCCcccch
Q 003265 524 DISLT-LIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDS----VLFGGGEVLV 598 (835)
Q Consensus 524 ~L~~~-~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~----~~~~~~~~~~ 598 (835)
+|++| .+..+|..++++++|++|++++|..+..+|.+ + ++++|++|++++|.....-...... .........+
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~l 740 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEF 740 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccc
Confidence 77776 56777777777777777777777777777764 3 6777777777776532100000000 0000000000
Q ss_pred HhhcCCCCCCeEEEEecchhhHHH----Hh-hcccccccceeeecCCCCCCCcccccccccccccccceecccccccccc
Q 003265 599 QELLGLKYLEVLELTLGSYHALQI----LL-SSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEEL 673 (835)
Q Consensus 599 ~~l~~L~~L~~L~l~~~~~~~l~~----l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 673 (835)
.....+++|+.|.+.......+.. +. .....+++|+.|.+++|.....++ ..+.++++|+.|+|++|..++.+
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCcCee
Confidence 111123444444443211100000 00 001123467777777766554444 45667777777777777666544
Q ss_pred cccchhcc-------------cccCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcccCccCCC
Q 003265 674 KIDYAEIV-------------RKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDET 739 (835)
Q Consensus 674 ~~~~~~~~-------------~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 739 (835)
+... ... ...| ....+|+.|+|+++ .++.+| ++..+++|+.|+|++|+.++.++.
T Consensus 819 P~~~-~L~sL~~L~Ls~c~~L~~~p--~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~------- 887 (1153)
T PLN03210 819 PTGI-NLESLESLDLSGCSRLRTFP--DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL------- 887 (1153)
T ss_pred CCCC-CccccCEEECCCCCcccccc--ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc-------
Confidence 2211 100 0000 11245555555555 445555 467889999999999999988765
Q ss_pred cccccCCCCCCcccEeecCCCCccccccCCC-------------CCCCCccEEEEecCCCcCCCCCC
Q 003265 740 PEVMGHISPFGNLQTLDLSRLPILKSIYWKP-------------LPFTHLKEMAVTHGCNQLRKLPL 793 (835)
Q Consensus 740 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-------------~~~~~L~~L~i~~~C~~L~~lp~ 793 (835)
....+++|+.|++.+|+++..++... ..+|....+.+. +|.+|..-+.
T Consensus 888 -----~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~-nC~~L~~~a~ 948 (1153)
T PLN03210 888 -----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFI-NCFNLDQEAL 948 (1153)
T ss_pred -----ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccc-cccCCCchhh
Confidence 66788999999999999998765422 135556777888 9988875553
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.9e-24 Score=224.58 Aligned_cols=327 Identities=18% Similarity=0.205 Sum_probs=220.4
Q ss_pred ccEEEEcCCCcccCCcc-ccCCceEEEEeeeCCccccCC-CCCCCcceEEEeccCCcc--cccchhhcCCCcceEEEeec
Q 003265 424 RNFLVCAGAGLKEAPDV-KRWENVRRLSLMQNQIETLSE-VPKCPHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSY 499 (835)
Q Consensus 424 ~~~~~~~~~~~~~~~~~-~~~~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~ 499 (835)
-.|+.....++..+|.. ....++.+|++.+|++..+.. ...+|.||++.+..|+.. .+|++ +-++..|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecch
Confidence 46777777777777743 456789999999999887654 488999999999977654 78888 55789999999999
Q ss_pred CCCCccccccCchHhhhhhcccEEeeccccccccchhh-cCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCc
Q 003265 500 CGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEEL-KKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 500 ~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
| .+.+.|..+-.-. ++-.|+||+|+|..+|..+ -+|+-|-+|||++| .+..+|+. +.+|..|++|.+++|.+
T Consensus 113 N----qL~EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 113 N----QLREVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred h----hhhhcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChh
Confidence 9 8999999999888 9999999999999999774 58899999999999 78999998 99999999999999887
Q ss_pred cCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCccccccccccccc
Q 003265 579 FNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNH 658 (835)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 658 (835)
..++ +..|.+++.|+.|.++...- .+..++.+..-..+|+.++++.++..... ..+-++.+
T Consensus 186 ~hfQ---------------LrQLPsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vP---ecly~l~~ 246 (1255)
T KOG0444|consen 186 NHFQ---------------LRQLPSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSENNLPIVP---ECLYKLRN 246 (1255)
T ss_pred hHHH---------------HhcCccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccccCCCcch---HHHhhhhh
Confidence 6543 33455666666666653321 12222222222345556666554332222 24445566
Q ss_pred ccceecccccccccccccchh-------------cccccCCcccCCCccEEeEecCC-CCCCCc-hhhccCCccEEeeec
Q 003265 659 LNELGIDRAEELEELKIDYAE-------------IVRKRREPFVFRSLHLVAIYECH-KLKDLT-FLVFAPSLKSLSLYG 723 (835)
Q Consensus 659 L~~L~l~~~~~l~~l~~~~~~-------------~~~~~~~~~~~~~L~~L~L~~c~-~l~~l~-~l~~l~~L~~L~L~~ 723 (835)
|+.|+++++...+ +.+.... ...+|.....+++|++|.+.++. ....+| -++++-+|+.+...+
T Consensus 247 LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 247 LRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred hheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 6666666543221 1111000 00011111235556666555553 222344 355566666666554
Q ss_pred CccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCC
Q 003265 724 CNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPL 793 (835)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~ 793 (835)
| .++-+|. .+..+++|+.|.|.. +.|-++|..+.-+|.|+.|++. +.|+|---|.
T Consensus 326 N-~LElVPE------------glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlr-eNpnLVMPPK 380 (1255)
T KOG0444|consen 326 N-KLELVPE------------GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLR-ENPNLVMPPK 380 (1255)
T ss_pred c-ccccCch------------hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeecc-CCcCccCCCC
Confidence 3 3444433 777888888888865 6778888877778888888888 8888875554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.1e-21 Score=241.84 Aligned_cols=330 Identities=17% Similarity=0.117 Sum_probs=201.3
Q ss_pred cCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecCCCCccc-cccCchHhhhhhc
Q 003265 442 RWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYCGQSWSS-FQLPVGMSELGSS 519 (835)
Q Consensus 442 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i-~~lp~~i~~l~~~ 519 (835)
...++++|++++|.+........+++|++|++++|... .+|.. +.++++|++|+|++| .+ ..+|..++++. +
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n----~l~~~~p~~~~~l~-~ 189 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN----VLVGKIPNSLTNLT-S 189 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC----cccccCChhhhhCc-C
Confidence 45577777777776654333345677777777765544 34443 677778888888777 44 35677777777 7
Q ss_pred ccEEeecccccc-ccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccch
Q 003265 520 LQLFDISLTLIK-ELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLV 598 (835)
Q Consensus 520 L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (835)
|++|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.. ..+
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p 253 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---------------PIP 253 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc---------------ccC
Confidence 888888777665 45777777788888888777444466665 7777888888887776542 234
Q ss_pred HhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccch
Q 003265 599 QELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYA 678 (835)
Q Consensus 599 ~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 678 (835)
..++.+++|+.|+++.+..... ++.......+|+.|++++|......+ ..+.++++|+.|++++|..... .+...
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~l~~n~~~~~-~~~~~ 328 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIP--ELVIQLQNLEILHLFSNNFTGK-IPVAL 328 (968)
T ss_pred hhHhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCC--hhHcCCCCCcEEECCCCccCCc-CChhH
Confidence 4567777777777776654311 11111223567777777765443333 3456677778887776654332 22222
Q ss_pred hcccccCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcccCcc-CC-----------CcccccC
Q 003265 679 EIVRKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKF-DE-----------TPEVMGH 745 (835)
Q Consensus 679 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~-~~-----------~~~~~~~ 745 (835)
..+++|+.|+|++|.....+| .++.+++|+.|++++|.....++..-.. .. ....+..
T Consensus 329 ---------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 329 ---------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred ---------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 247778888887775433454 4677777888888776554433321000 00 0011224
Q ss_pred CCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCCCCCcc-cccceEEech
Q 003265 746 ISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSA-KERKFVIRGR 808 (835)
Q Consensus 746 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~-~l~~~~i~~~ 808 (835)
+..+++|+.|.+++|.-...++.....+++|+.|+++ +|.--..+|...... .|+.+.+.++
T Consensus 400 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~n 462 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS-NNNLQGRINSRKWDMPSLQMLSLARN 462 (968)
T ss_pred HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc-CCcccCccChhhccCCCCcEEECcCc
Confidence 4567778888887765544566556667888888887 554333444433333 5666666644
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.3e-21 Score=241.16 Aligned_cols=328 Identities=20% Similarity=0.223 Sum_probs=155.6
Q ss_pred ceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecCCCCcccc-ccCchHhhhhhcc
Q 003265 445 NVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYCGQSWSSF-QLPVGMSELGSSL 520 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~-~lp~~i~~l~~~L 520 (835)
+++.|++.+|.+..... ...+++|++|++++|... .+|..+|.++++|++|+|++| .+. .+|. +.+. +|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n----~l~~~~p~--~~l~-~L 142 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN----NFTGSIPR--GSIP-NL 142 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC----ccccccCc--cccC-CC
Confidence 56666666555443211 245666666666655443 455555556666666666666 332 2332 2344 55
Q ss_pred cEEeecccccc-ccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcc-----c----c
Q 003265 521 QLFDISLTLIK-ELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDS-----V----L 590 (835)
Q Consensus 521 ~~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~-----~----~ 590 (835)
++|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.......-.. . .
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 55555555544 34555555555555555555323344443 555555555555555433100000000 0 0
Q ss_pred cCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceeccccccc
Q 003265 591 FGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEEL 670 (835)
Q Consensus 591 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 670 (835)
.......+..++.+++|+.|+++.+.... .++......++|+.|.+++|......+ ..+.++++|+.|++++|...
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTG--PIPSSLGNLKNLQYLFLYQNKLSGPIP--PSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceecc--ccChhHhCCCCCCEEECcCCeeeccCc--hhHhhccCcCEEECcCCeec
Confidence 00001123334455555555554443221 011111122345555555544332222 23444555555555544322
Q ss_pred ccccccchhcccccCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCC
Q 003265 671 EELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPF 749 (835)
Q Consensus 671 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 749 (835)
.. .+.+. ..+++|+.|++++|.....+| .+..+++|+.|+|++|.....++. .++.+
T Consensus 298 ~~-~p~~~---------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------------~l~~~ 355 (968)
T PLN00113 298 GE-IPELV---------IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK------------NLGKH 355 (968)
T ss_pred cC-CChhH---------cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh------------HHhCC
Confidence 21 12222 235666666666664333333 355666666666666554433332 45556
Q ss_pred CcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCCCCCcc-cccceEEec
Q 003265 750 GNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSA-KERKFVIRG 807 (835)
Q Consensus 750 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~-~l~~~~i~~ 807 (835)
++|+.|+++++.-...++.....+++|+.|++. +|+-...+|...... +++.+.+.+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~-~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF-SNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECc-CCEecccCCHHHhCCCCCCEEECcC
Confidence 677777777654444455444456677777776 554444555443333 555555554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=4e-22 Score=208.72 Aligned_cols=292 Identities=19% Similarity=0.181 Sum_probs=217.4
Q ss_pred ccccCCceEEEEeeeCCccccCCC-CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhh
Q 003265 439 DVKRWENVRRLSLMQNQIETLSEV-PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELG 517 (835)
Q Consensus 439 ~~~~~~~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~ 517 (835)
++.....+..|+++.|.+...|.. ...+++-+|+|++|++-.+|...|-++..|-+||||+| .+..+|+.+..|.
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N----rLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN----RLEMLPPQIRRLS 173 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc----hhhhcCHHHHHHh
Confidence 455677888888998888888765 77788888999966655888888888999999999999 8888999999998
Q ss_pred hcccEEeecccccccc-chhhcCCCCCcEEecccccc-cCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcc
Q 003265 518 SSLQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYR-LNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGE 595 (835)
Q Consensus 518 ~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~-l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 595 (835)
+|++|+|++|.+..+ -..+..+++|++|.+++++. +..+|.+ +..|.+|+.++++.|.+..
T Consensus 174 -~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~--------------- 236 (1255)
T KOG0444|consen 174 -MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPI--------------- 236 (1255)
T ss_pred -hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCc---------------
Confidence 999999998854322 11222577888888888753 4678887 8888999999998776542
Q ss_pred cchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccc
Q 003265 596 VLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKI 675 (835)
Q Consensus 596 ~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~ 675 (835)
.++.+-++.+|+.|+++.|.++.+..-.+. -.+|++|+++.+... .+| ..+.+++.|+.|.+.++... .
T Consensus 237 -vPecly~l~~LrrLNLS~N~iteL~~~~~~---W~~lEtLNlSrNQLt-~LP--~avcKL~kL~kLy~n~NkL~----F 305 (1255)
T KOG0444|consen 237 -VPECLYKLRNLRRLNLSGNKITELNMTEGE---WENLETLNLSRNQLT-VLP--DAVCKLTKLTKLYANNNKLT----F 305 (1255)
T ss_pred -chHHHhhhhhhheeccCcCceeeeeccHHH---Hhhhhhhccccchhc-cch--HHHhhhHHHHHHHhccCccc----c
Confidence 566678889999999998877655433322 247888888887543 333 47888899999988765421 1
Q ss_pred cchhcccccCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccE
Q 003265 676 DYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQT 754 (835)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 754 (835)
+ +.|.+++.+.+|+.+...++ +++-+| .+..|+.|+.|.|+.| .+-.+|. .+.-+|.|+.
T Consensus 306 e-----GiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~N-rLiTLPe------------aIHlL~~l~v 366 (1255)
T KOG0444|consen 306 E-----GIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHN-RLITLPE------------AIHLLPDLKV 366 (1255)
T ss_pred c-----CCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccc-ceeechh------------hhhhcCCcce
Confidence 1 12344567899999999988 677777 6889999999999865 4445554 7888999999
Q ss_pred eecCCCCccccccCCCCCCCCccEEEE
Q 003265 755 LDLSRLPILKSIYWKPLPFTHLKEMAV 781 (835)
Q Consensus 755 L~l~~~~~l~~l~~~~~~~~~L~~L~i 781 (835)
|++.++|+|.--|....+-.+|+--+|
T Consensus 367 LDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred eeccCCcCccCCCCcchhhhcceeeec
Confidence 999999999877654444345554433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.3e-21 Score=202.01 Aligned_cols=313 Identities=19% Similarity=0.214 Sum_probs=173.2
Q ss_pred eEEEEeeeCCccccCCC--CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-chHhhhhhcccE
Q 003265 446 VRRLSLMQNQIETLSEV--PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELGSSLQL 522 (835)
Q Consensus 446 ~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~~~L~~ 522 (835)
+..|++.+|.+.++... ..++.||+|+|+.|....++...|..-.++++|+|++| .|+.+- ..+..+. +|-.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N----~It~l~~~~F~~ln-sL~t 201 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN----RITTLETGHFDSLN-SLLT 201 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc----cccccccccccccc-hhee
Confidence 45555555544444322 34444555555533332444333444444555555555 444432 2233343 4445
Q ss_pred Eeeccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhh
Q 003265 523 FDISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQEL 601 (835)
Q Consensus 523 L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 601 (835)
|.|+.|+|+.||.. |++|++|+.|+|..| .++.+..-.+..|.+|+.|.+..|.+....... +
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~---------------F 265 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA---------------F 265 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcc---------------e
Confidence 55555555555432 333555555555544 333332222444555555555544443321111 3
Q ss_pred cCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcc
Q 003265 602 LGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIV 681 (835)
Q Consensus 602 ~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 681 (835)
-.|.+++.|++..|....+.+ ......+.|+.|+++.+.....-. ....-+++|+.|+|+.|. +..++...+.
T Consensus 266 y~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdLs~N~-i~~l~~~sf~-- 338 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDLSSNR-ITRLDEGSFR-- 338 (873)
T ss_pred eeecccceeecccchhhhhhc--ccccccchhhhhccchhhhheeec--chhhhcccceeEeccccc-cccCChhHHH--
Confidence 446667777777666544332 111224577778887765443332 355556788888887543 4445555444
Q ss_pred cccCCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCC
Q 003265 682 RKRREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSR 759 (835)
Q Consensus 682 ~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 759 (835)
.+..|+.|+|+.+ .+.++. .+..+++|+.|+|++|..--.+ . +....+.++|+|+.|.+.+
T Consensus 339 -------~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~I-E--------Daa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 339 -------VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCI-E--------DAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred -------HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEE-e--------cchhhhccchhhhheeecC
Confidence 3778888888887 566654 4667889999999886543322 2 1223677899999999998
Q ss_pred CCccccccC-CCCCCCCccEEEEecCCCcCCCCCCC-CCcccccceEEe
Q 003265 760 LPILKSIYW-KPLPFTHLKEMAVTHGCNQLRKLPLD-SNSAKERKFVIR 806 (835)
Q Consensus 760 ~~~l~~l~~-~~~~~~~L~~L~i~~~C~~L~~lp~~-~~~~~l~~~~i~ 806 (835)
+++++++. ....++.|++|++. + +-+.++-.. +....|+.+.+.
T Consensus 402 -Nqlk~I~krAfsgl~~LE~LdL~-~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 402 -NQLKSIPKRAFSGLEALEHLDLG-D-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred -ceeeecchhhhccCcccceecCC-C-Ccceeecccccccchhhhhhhc
Confidence 68999886 44568999999997 4 456665443 334466666554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-20 Score=197.00 Aligned_cols=318 Identities=17% Similarity=0.174 Sum_probs=233.1
Q ss_pred ccCCceEEEEeeeCCccccCCC-CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhc
Q 003265 441 KRWENVRRLSLMQNQIETLSEV-PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSS 519 (835)
Q Consensus 441 ~~~~~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~ 519 (835)
.+..+++.+++..|.+..+|.+ ....+|+.|+|.+|....+...-++-++.||.||||.| .|.++|..-+.-..+
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN----~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN----LISEIPKPSFPAKVN 174 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc----hhhcccCCCCCCCCC
Confidence 4456888888888888888877 44556999999855444676666888899999999999 788876543333238
Q ss_pred ccEEeecccccccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccch
Q 003265 520 LQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLV 598 (835)
Q Consensus 520 L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (835)
+++|+|++|.|+.+ -..|..|.+|-+|.|+.| .+..+|...+++|++|+.|++..|.+...+ -
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive---------------~ 238 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVE---------------G 238 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeeh---------------h
Confidence 99999999999988 345778889999999998 789999877888999999999988765311 1
Q ss_pred HhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccch
Q 003265 599 QELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYA 678 (835)
Q Consensus 599 ~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~ 678 (835)
..+++|.+|+.|.+..|++..+..-. ...+..+++|+|..++...... ..+-++..|+.|+++.|..-. +.++.-
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~--g~lfgLt~L~~L~lS~NaI~r-ih~d~W 313 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNE--GWLFGLTSLEQLDLSYNAIQR-IHIDSW 313 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcc--eeeecccceeecccchhhhhhc--ccccccchhhhhccchhhhhe-eecchh
Confidence 23667778888888877776655422 2234678999998876443222 366778999999999765433 333222
Q ss_pred hcccccCCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEee
Q 003265 679 EIVRKRREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLD 756 (835)
Q Consensus 679 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 756 (835)
.++++|+.|+|+++ .+..++ .+..|..|+.|+|++| .+..+-. ..+.++.+|++|+
T Consensus 314 ---------sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e-----------~af~~lssL~~Ld 371 (873)
T KOG4194|consen 314 ---------SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAE-----------GAFVGLSSLHKLD 371 (873)
T ss_pred ---------hhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHh-----------hHHHHhhhhhhhc
Confidence 25899999999998 688776 4778999999999986 5555533 2567789999999
Q ss_pred cCCCCcccc-ccC---CCCCCCCccEEEEecCCCcCCCCCCCCCcc--cccceEEech
Q 003265 757 LSRLPILKS-IYW---KPLPFTHLKEMAVTHGCNQLRKLPLDSNSA--KERKFVIRGR 808 (835)
Q Consensus 757 l~~~~~l~~-l~~---~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~--~l~~~~i~~~ 808 (835)
|.++. +.. +.. ....+|+|+.|.+. -++|+.+|...... .|+.+.+.++
T Consensus 372 Lr~N~-ls~~IEDaa~~f~gl~~LrkL~l~--gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 372 LRSNE-LSWCIEDAAVAFNGLPSLRKLRLT--GNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred CcCCe-EEEEEecchhhhccchhhhheeec--CceeeecchhhhccCcccceecCCCC
Confidence 99843 332 222 22348999999997 67999999865443 6777777653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=3e-19 Score=178.53 Aligned_cols=321 Identities=20% Similarity=0.169 Sum_probs=194.7
Q ss_pred ccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhh
Q 003265 439 DVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGS 518 (835)
Q Consensus 439 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~ 518 (835)
+....+++..++++.|.+..+|.+++|+.|..|.+..|..-.+|....+++++|.+|||..| .++++|..++.+.
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN----klke~Pde~clLr- 275 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN----KLKEVPDEICLLR- 275 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc----ccccCchHHHHhh-
Confidence 44556788889999999999999999999999999944433788888889999999999999 9999999999998
Q ss_pred cccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcc--cceeee--cCcCccCcccCCCccc-ccCC
Q 003265 519 SLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSR--LCVLRM--FGTGWFNFHEAPEDSV-LFGG 593 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~--L~~L~l--~~~~~~~~~~~~~~~~-~~~~ 593 (835)
+|++||+|+|.|+.+|.++++| .|+.|-+.|| -++.+-.+++.+-+. |++|.- ..-+.+.. ..+.. ....
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s---e~~~e~~~t~ 350 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS---EGGTETAMTL 350 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCC---cccccccCCC
Confidence 9999999999999999999999 9999999999 577777765554332 344422 11111110 00000 0000
Q ss_pred cccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccc
Q 003265 594 GEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEEL 673 (835)
Q Consensus 594 ~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 673 (835)
..........+-+.+.|+++....+.++.-.....-..-+.+.+++.+....... .+..+..+.+.-+..++.+. .
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk---~L~~lkelvT~l~lsnn~is-f 426 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPK---RLVELKELVTDLVLSNNKIS-F 426 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhh---hhHHHHHHHHHHHhhcCccc-c
Confidence 1122233344556667777655554443322221111234555555544332221 23333333333232233222 1
Q ss_pred cccchhcccccCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcccC-----------ccCCCcc
Q 003265 674 KIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVG-----------KFDETPE 741 (835)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~-----------~~~~~~~ 741 (835)
.+..+ ..+++|..|+|+++ -+.++| .++.+..|+.|+|+.| ....+|..- .......
T Consensus 427 v~~~l---------~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 427 VPLEL---------SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred chHHH---------Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccc
Confidence 12222 35777777777776 456666 4667777777777765 333333200 0000001
Q ss_pred cc-cCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCC
Q 003265 742 VM-GHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCN 786 (835)
Q Consensus 742 ~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~ 786 (835)
+. ..+.++.+|.+|++.+ +.+.++|...+.|.+|++|++. +.|
T Consensus 496 vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~-gNp 539 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELD-GNP 539 (565)
T ss_pred cChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEec-CCc
Confidence 11 1355667777777766 4577777777777777777777 543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-18 Score=192.24 Aligned_cols=236 Identities=20% Similarity=0.222 Sum_probs=141.1
Q ss_pred CCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCc--c-----cccCCcccchHhhcCCCCCCeEEEE
Q 003265 541 VNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPED--S-----VLFGGGEVLVQELLGLKYLEVLELT 613 (835)
Q Consensus 541 ~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~l~~L~~L~~L~l~ 613 (835)
.+|++++++++ .+..+|. .++.+.+|+.|++.+|.+......... . .....-.-.+..+.+++.|++|++.
T Consensus 241 ~nl~~~dis~n-~l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchh-hhhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 35666666666 5666774 377777777777776665421100000 0 0000001123334456666666666
Q ss_pred ecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCc
Q 003265 614 LGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSL 693 (835)
Q Consensus 614 ~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 693 (835)
.|....++..... .....++.|..+.+....... ..=..++.|+.|++.+|.......+ ....+++|
T Consensus 319 ~N~L~~lp~~~l~-v~~~~l~~ln~s~n~l~~lp~--~~e~~~~~Lq~LylanN~Ltd~c~p----------~l~~~~hL 385 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLA-VLNASLNTLNVSSNKLSTLPS--YEENNHAALQELYLANNHLTDSCFP----------VLVNFKHL 385 (1081)
T ss_pred hccccccchHHHh-hhhHHHHHHhhhhcccccccc--ccchhhHHHHHHHHhcCcccccchh----------hhccccce
Confidence 6655544432111 111223344333332221111 1112345677777766543332211 12358999
Q ss_pred cEEeEecCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCC
Q 003265 694 HLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPL 771 (835)
Q Consensus 694 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 771 (835)
+.|+|+++ .+..+| .+.+++.|+.|+|+|| .++.++. .+..+++|++|...+ +++..+| +..
T Consensus 386 KVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~------------tva~~~~L~tL~ahs-N~l~~fP-e~~ 449 (1081)
T KOG0618|consen 386 KVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPD------------TVANLGRLHTLRAHS-NQLLSFP-ELA 449 (1081)
T ss_pred eeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhH------------HHHhhhhhHHHhhcC-Cceeech-hhh
Confidence 99999998 688887 4788999999999996 6677765 667788999998776 5677787 677
Q ss_pred CCCCccEEEEecCCCcCCC--CCCCCCcccccceEEechh
Q 003265 772 PFTHLKEMAVTHGCNQLRK--LPLDSNSAKERKFVIRGRE 809 (835)
Q Consensus 772 ~~~~L~~L~i~~~C~~L~~--lp~~~~~~~l~~~~i~~~~ 809 (835)
.+|.|+.+|++ |++|+. +|.......|+.+.+.|+.
T Consensus 450 ~l~qL~~lDlS--~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 QLPQLKVLDLS--CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCcceEEecc--cchhhhhhhhhhCCCcccceeeccCCc
Confidence 88999999997 999985 4555555678899999875
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=2.7e-18 Score=171.84 Aligned_cols=262 Identities=23% Similarity=0.281 Sum_probs=176.2
Q ss_pred cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEE
Q 003265 467 HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCL 546 (835)
Q Consensus 467 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 546 (835)
.+..+.++.|....+.++ +.++..|.+|++++| .+..+|++|+.+. .++.|+.++|++.++|+.++.+.+|.+|
T Consensus 46 ~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n----~l~~lp~aig~l~-~l~~l~vs~n~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRED-LKNLACLTVLNVHDN----KLSQLPAAIGELE-ALKSLNVSHNKLSELPEQIGSLISLVKL 119 (565)
T ss_pred chhhhhhccCchhhccHh-hhcccceeEEEeccc----hhhhCCHHHHHHH-HHHHhhcccchHhhccHHHhhhhhhhhh
Confidence 356677775554444444 788999999999999 8899999999999 9999999999999999999999999999
Q ss_pred ecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhc
Q 003265 547 NLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSS 626 (835)
Q Consensus 547 ~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~ 626 (835)
+.++| .+.++|++ ++.+..|+.|+..+|.+++ .+..+.++.+|..+++..+....+
T Consensus 120 ~~s~n-~~~el~~~-i~~~~~l~dl~~~~N~i~s----------------lp~~~~~~~~l~~l~~~~n~l~~l------ 175 (565)
T KOG0472|consen 120 DCSSN-ELKELPDS-IGRLLDLEDLDATNNQISS----------------LPEDMVNLSKLSKLDLEGNKLKAL------ 175 (565)
T ss_pred hcccc-ceeecCch-HHHHhhhhhhhcccccccc----------------CchHHHHHHHHHHhhccccchhhC------
Confidence 99999 67888888 8999999999998887764 344455555555555544332221
Q ss_pred ccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCC
Q 003265 627 NRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKD 706 (835)
Q Consensus 627 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 706 (835)
.+ ..-.+..|+.|+...+ .++.+++ ..+.+.+|..|+|..+ ++..
T Consensus 176 --------------------~~---~~i~m~~L~~ld~~~N-~L~tlP~----------~lg~l~~L~~LyL~~N-ki~~ 220 (565)
T KOG0472|consen 176 --------------------PE---NHIAMKRLKHLDCNSN-LLETLPP----------ELGGLESLELLYLRRN-KIRF 220 (565)
T ss_pred --------------------CH---HHHHHHHHHhcccchh-hhhcCCh----------hhcchhhhHHHHhhhc-cccc
Confidence 11 1112455555555322 2332322 2233666666666666 5666
Q ss_pred CchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCC
Q 003265 707 LTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCN 786 (835)
Q Consensus 707 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~ 786 (835)
+|.+.++..|+.|.+..| .++.++. .....+++|..|++.+ .++++.|.+.--+.+|+.|+++ .+
T Consensus 221 lPef~gcs~L~Elh~g~N-~i~~lpa-----------e~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlS--NN 285 (565)
T KOG0472|consen 221 LPEFPGCSLLKELHVGEN-QIEMLPA-----------EHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLS--NN 285 (565)
T ss_pred CCCCCccHHHHHHHhccc-HHHhhHH-----------HHhcccccceeeeccc-cccccCchHHHHhhhhhhhccc--CC
Confidence 666666677777766553 4555544 1334667777777766 4667776666666667777776 55
Q ss_pred cCCCCCCCCCcccccceEEech
Q 003265 787 QLRKLPLDSNSAKERKFVIRGR 808 (835)
Q Consensus 787 ~L~~lp~~~~~~~l~~~~i~~~ 808 (835)
.+..+|.......++.+.+.|+
T Consensus 286 ~is~Lp~sLgnlhL~~L~leGN 307 (565)
T KOG0472|consen 286 DISSLPYSLGNLHLKFLALEGN 307 (565)
T ss_pred ccccCCcccccceeeehhhcCC
Confidence 6777776666666666666664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.2e-14 Score=164.05 Aligned_cols=254 Identities=22% Similarity=0.221 Sum_probs=176.4
Q ss_pred cccEEEEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 423 KRNFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
+...+...+..+..+|... +.+++.|.+.+|.+..+|.. .++|++|++++|....+|.. .++|+.|+|++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-- 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-- 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC--
Confidence 3556666666777777633 34789999999998888753 58899999997654466642 468899999999
Q ss_pred CccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcc
Q 003265 503 SWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFH 582 (835)
Q Consensus 503 ~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 582 (835)
.+..+|.. .. +|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. . .+|+.|++++|.+..
T Consensus 273 --~L~~Lp~l---p~-~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l-p---~~L~~L~Ls~N~L~~-- 336 (788)
T PRK15387 273 --PLTHLPAL---PS-GLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL-P---SELCKLWAYNNQLTS-- 336 (788)
T ss_pred --chhhhhhc---hh-hcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC-c---ccccccccccCcccc--
Confidence 77777752 23 888999999999998863 478999999998 67777752 2 457788888877653
Q ss_pred cCCCcccccCCcccchHhhcC-CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccc
Q 003265 583 EAPEDSVLFGGGEVLVQELLG-LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNE 661 (835)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~l~~-L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 661 (835)
+.. ..+|+.|+++.|....++.+ ..+|+.|.++++... .++ .+ +.+|+.
T Consensus 337 ------------------LP~lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L~-~LP---~l--~~~L~~ 386 (788)
T PRK15387 337 ------------------LPTLPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRLT-SLP---AL--PSGLKE 386 (788)
T ss_pred ------------------ccccccccceEecCCCccCCCCCC------Ccccceehhhccccc-cCc---cc--ccccce
Confidence 111 14788888888876655432 346777888776533 233 11 246888
Q ss_pred eecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcc
Q 003265 662 LGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPE 741 (835)
Q Consensus 662 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 741 (835)
|++++|. +..++ ..+++|+.|++++| .+..+|.+ +.+|+.|++++|. ++.+|.
T Consensus 387 LdLs~N~-Lt~LP-------------~l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~Nq-Lt~LP~--------- 439 (788)
T PRK15387 387 LIVSGNR-LTSLP-------------VLPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQ-LTRLPE--------- 439 (788)
T ss_pred EEecCCc-ccCCC-------------CcccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccCc-ccccCh---------
Confidence 8887654 33221 12467888888888 56777642 4578888888754 556654
Q ss_pred cccCCCCCCcccEeecCCCC
Q 003265 742 VMGHISPFGNLQTLDLSRLP 761 (835)
Q Consensus 742 ~~~~~~~~~~L~~L~l~~~~ 761 (835)
.+..+++|+.|+|++++
T Consensus 440 ---sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 440 ---SLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---HHhhccCCCeEECCCCC
Confidence 56678888888888865
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=9.1e-14 Score=159.02 Aligned_cols=257 Identities=20% Similarity=0.150 Sum_probs=188.3
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEe
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFD 524 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~ 524 (835)
.-..|+++.+.+..+|... .++|+.|.+.+|+...+|. .+++|++|+|++| .++.+|.. .. +|+.|+
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N----~LtsLP~l---p~-sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN----QLTSLPVL---PP-GLLELS 268 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC----ccCcccCc---cc-ccceee
Confidence 3456788888888887642 3589999999765447664 2588999999999 88888853 34 999999
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCC
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGL 604 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 604 (835)
+++|.++.+|.. +.+|+.|++++| .+..+|.. +++|++|++++|.+.... .+ .
T Consensus 269 Ls~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~~Lp-----------------~l--p 321 (788)
T PRK15387 269 IFSNPLTHLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLP-----------------AL--P 321 (788)
T ss_pred ccCCchhhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCccccCC-----------------CC--c
Confidence 999999999874 367889999999 78888863 478999999998776411 01 2
Q ss_pred CCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhccccc
Q 003265 605 KYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKR 684 (835)
Q Consensus 605 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 684 (835)
.+|+.|++..|....++. ++.+|+.|+|++|... .++ .+ ..+|+.|++++|. +..++
T Consensus 322 ~~L~~L~Ls~N~L~~LP~------lp~~Lq~LdLS~N~Ls-~LP---~l--p~~L~~L~Ls~N~-L~~LP---------- 378 (788)
T PRK15387 322 SELCKLWAYNNQLTSLPT------LPSGLQELSVSDNQLA-SLP---TL--PSELYKLWAYNNR-LTSLP---------- 378 (788)
T ss_pred ccccccccccCccccccc------cccccceEecCCCccC-CCC---CC--Ccccceehhhccc-cccCc----------
Confidence 356777888777665543 2358999999987544 333 11 3578888887653 33221
Q ss_pred CCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccc
Q 003265 685 REPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILK 764 (835)
Q Consensus 685 ~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 764 (835)
..+.+|+.|+|++| .+..+|.. .++|+.|++++|. +..+|. .+.+|+.|++++ ++++
T Consensus 379 ---~l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~-NqLt 435 (788)
T PRK15387 379 ---ALPSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR-NQLT 435 (788)
T ss_pred ---ccccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhcc-Cccc
Confidence 12467999999998 67777743 4789999999975 455543 235788999988 5688
Q ss_pred cccCCCCCCCCccEEEEecCCCcCC
Q 003265 765 SIYWKPLPFTHLKEMAVTHGCNQLR 789 (835)
Q Consensus 765 ~l~~~~~~~~~L~~L~i~~~C~~L~ 789 (835)
.+|.....+++|+.|+++ +++ |.
T Consensus 436 ~LP~sl~~L~~L~~LdLs-~N~-Ls 458 (788)
T PRK15387 436 RLPESLIHLSSETTVNLE-GNP-LS 458 (788)
T ss_pred ccChHHhhccCCCeEECC-CCC-CC
Confidence 998887889999999998 654 44
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=6.6e-14 Score=161.36 Aligned_cols=118 Identities=22% Similarity=0.305 Sum_probs=58.1
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEe
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFD 524 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~ 524 (835)
.++.|++.+|.+..+|.. .+++|++|++++|+...+|..+. .+|+.|+|++| .+..+|..+. . +|++|+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N----~L~~LP~~l~--s-~L~~L~ 268 (754)
T PRK15370 200 QITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLP---DTIQEMELSIN----RITELPERLP--S-ALQSLD 268 (754)
T ss_pred CCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhhh---ccccEEECcCC----ccCcCChhHh--C-CCCEEE
Confidence 455555555555555432 12355555555443224444321 24555555555 5555554432 2 555555
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
+++|+++.+|..+. .+|++|++++| .+..+|.. +. ++|++|++++|.+.
T Consensus 269 Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccc
Confidence 55555555555443 35555555555 45555543 21 34555555554443
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.48 E-value=5.6e-14 Score=164.45 Aligned_cols=324 Identities=21% Similarity=0.264 Sum_probs=207.3
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCC--ccccCC--CCCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeec
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQ--IETLSE--VPKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSY 499 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~ 499 (835)
+.++........++......+++.+-+..|. +..++. +..++.|++|++++|..+ .+|.+ ++.+-+||+|+|++
T Consensus 526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccC
Confidence 3445555555556655556689999999886 555655 578999999999998887 77776 89999999999999
Q ss_pred CCCCccccccCchHhhhhhcccEEeeccc-cccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCc
Q 003265 500 CGQSWSSFQLPVGMSELGSSLQLFDISLT-LIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 500 ~~~~~~i~~lp~~i~~l~~~L~~L~L~~~-~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
+ .+..+|.++++|. .|.||++..+ .+..+|..+..|++|++|.+.... . ......++.+.+|++|....+..
T Consensus 605 t----~I~~LP~~l~~Lk-~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~-~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 605 T----GISHLPSGLGNLK-KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-L-SNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred C----CccccchHHHHHH-hhheeccccccccccccchhhhcccccEEEeeccc-c-ccchhhHHhhhcccchhhheeec
Confidence 9 9999999999999 9999999998 455667777779999999997663 1 11111244445555554443322
Q ss_pred cCcccCCCcccccCCcccchHhhcCCCCCCeEEEEec-chhhHHHHhhcccccccceeeecCCCCCCCcccc---ccccc
Q 003265 579 FNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLG-SYHALQILLSSNRLKSCIRSLFLPLAGDATSIID---ATAFA 654 (835)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~l~ 654 (835)
.. ...+..+..+..|.++..... ................+|+.|.+.+|........ .....
T Consensus 678 ~s--------------~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~ 743 (889)
T KOG4658|consen 678 SS--------------VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVL 743 (889)
T ss_pred ch--------------hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchh
Confidence 21 112233334444432221111 0011122222233346788888888766432110 00111
Q ss_pred c-cccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcc
Q 003265 655 D-LNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIIS 732 (835)
Q Consensus 655 ~-~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~ 732 (835)
. ++++..+.+..|.... .+.|.. ..|+|+.|.+..|..++++. ....+..++.+.+..+. .....
T Consensus 744 ~~f~~l~~~~~~~~~~~r--~l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~- 810 (889)
T KOG4658|consen 744 LCFPNLSKVSILNCHMLR--DLTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLR- 810 (889)
T ss_pred hhHHHHHHHHhhcccccc--ccchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-cccce-
Confidence 1 4567777777787777 455553 58999999999998888754 45566666654444332 22110
Q ss_pred cCccCCCcccccCCCCCCcccEeecCCCCccccccCCC----CCCCCccEEEEecCC-CcCCCCCCC
Q 003265 733 VGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKP----LPFTHLKEMAVTHGC-NQLRKLPLD 794 (835)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~i~~~C-~~L~~lp~~ 794 (835)
.....++||++..+.+.+. .++.+.... +.+|.+..+.+. +| +++..+|.+
T Consensus 811 ---------~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~-~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 811 ---------MLCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIV-GCEEKLKEYPDG 866 (889)
T ss_pred ---------eeecCCCCceeEecccCcc-chhheehhcCcccccCcccccccee-ccccceeecCCc
Confidence 0114556666666666663 356555544 667888999998 87 889999986
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=7.7e-15 Score=162.28 Aligned_cols=284 Identities=21% Similarity=0.215 Sum_probs=177.1
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEe
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFD 524 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~ 524 (835)
++++|....|.+..+...+...+|+++++++++...+| +.+..+.+|..|+..+| .+..+|..+.... +|++|+
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N----~l~~lp~ri~~~~-~L~~l~ 293 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN----RLVALPLRISRIT-SLVSLS 293 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch----hHHhhHHHHhhhh-hHHHHH
Confidence 56667766666665544456667777777766544666 55777778888888877 7777777777777 888888
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcc-cceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSR-LCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
+.+|.++.+|...+.++.|++|+|..| .+..+|...+..+.. |+.|+.+.+......-. +. ..
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~---------~e------~~ 357 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY---------EE------NN 357 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccc---------cc------hh
Confidence 877877777777777788888888777 677777754444443 56666655444321100 00 11
Q ss_pred CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccc
Q 003265 604 LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRK 683 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 683 (835)
++.|+.|.+.+|..+. ..........+|+.|+|+++..- .++ .+.+.++..|+.|+++||. ++.+. +..
T Consensus 358 ~~~Lq~LylanN~Ltd--~c~p~l~~~~hLKVLhLsyNrL~-~fp-as~~~kle~LeeL~LSGNk-L~~Lp-~tv----- 426 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTD--SCFPVLVNFKHLKVLHLSYNRLN-SFP-ASKLRKLEELEELNLSGNK-LTTLP-DTV----- 426 (1081)
T ss_pred hHHHHHHHHhcCcccc--cchhhhccccceeeeeecccccc-cCC-HHHHhchHHhHHHhcccch-hhhhh-HHH-----
Confidence 2334444444443221 11111122357888888876432 222 2467788888999998865 44443 222
Q ss_pred cCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCcc
Q 003265 684 RREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPIL 763 (835)
Q Consensus 684 ~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 763 (835)
..++.|+.|...++ .+..+|.+.++|.|++++|+.| .+..+.. ...... |+|++|++++++.+
T Consensus 427 ----a~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l----------~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 427 ----ANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCN-NLSEVTL----------PEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred ----HhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccc-hhhhhhh----------hhhCCC-cccceeeccCCccc
Confidence 25788888888887 6777888889999999999854 4544421 011111 79999999987652
Q ss_pred ccccCCCCCCCCccEEEE
Q 003265 764 KSIYWKPLPFTHLKEMAV 781 (835)
Q Consensus 764 ~~l~~~~~~~~~L~~L~i 781 (835)
-.+...|+.++.+..
T Consensus 490 ---~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 490 ---VFDHKTLKVLKSLSQ 504 (1081)
T ss_pred ---ccchhhhHHhhhhhh
Confidence 223334444444433
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=1.3e-15 Score=135.00 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=17.2
Q ss_pred cccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEeccc
Q 003265 505 SSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRW 550 (835)
Q Consensus 505 ~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~ 550 (835)
.|+++|.+|+.++ +|+.|+++-|.+..+|.+++.++-|++|||.+
T Consensus 67 qie~lp~~issl~-klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 67 QIEELPTSISSLP-KLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhcChhhhhch-hhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 3333333333333 33333333333333333333333333333333
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=2.4e-13 Score=156.68 Aligned_cols=248 Identities=17% Similarity=0.208 Sum_probs=167.2
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEe
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFD 524 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~ 524 (835)
+...+.+.++.+..+|.. -.++|+.|++++|+...+|..++ ++|+.|+|++| .++.+|..+. . +|+.|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N----~LtsLP~~l~--~-~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN----QLTSIPATLP--D-TIQEME 247 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC----ccccCChhhh--c-cccEEE
Confidence 456677887777777653 23679999999765448887644 58999999999 8888987553 3 899999
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCC
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGL 604 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 604 (835)
|++|.+..+|..+. .+|+.|++++| .+..+|.. +. ++|++|++++|.+..+. ..+ .
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~Lt~LP----------------~~l--p 303 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNSIRTLP----------------AHL--P 303 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCccccCc----------------ccc--h
Confidence 99999999998775 58999999988 78889876 43 58999999998776411 111 1
Q ss_pred CCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhccccc
Q 003265 605 KYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKR 684 (835)
Q Consensus 605 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 684 (835)
++|+.|+++.|....++. ...++|+.|.+++|.... ++ ..+ +++|+.|++++|. +..+ +..
T Consensus 304 ~sL~~L~Ls~N~Lt~LP~-----~l~~sL~~L~Ls~N~Lt~-LP--~~l--~~sL~~L~Ls~N~-L~~L-P~~------- 364 (754)
T PRK15370 304 SGITHLNVQSNSLTALPE-----TLPPGLKTLEAGENALTS-LP--ASL--PPELQVLDVSKNQ-ITVL-PET------- 364 (754)
T ss_pred hhHHHHHhcCCccccCCc-----cccccceeccccCCcccc-CC--hhh--cCcccEEECCCCC-CCcC-Chh-------
Confidence 356667777666554332 123578888888775432 32 123 2578888888764 3322 111
Q ss_pred CCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCC
Q 003265 685 REPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLP 761 (835)
Q Consensus 685 ~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 761 (835)
..++|+.|+|++| .+..+|.- -.++|+.|++++|. +..+|. .+......+|++..|.+.+++
T Consensus 365 ----lp~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N~-L~~LP~--------sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 365 ----LPPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRNN-LVRLPE--------SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ----hcCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccCC-cccCch--------hHHHHhhcCCCccEEEeeCCC
Confidence 2467888888888 56666631 12468888888764 445443 111133445777888887754
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=3.6e-11 Score=147.91 Aligned_cols=287 Identities=17% Similarity=0.226 Sum_probs=180.1
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 174 (835)
.+|-|.+-.+.+-+ ....+++.|.|++|.||||++.++..+. . .++|+++.. ..+...+...++..++.
T Consensus 15 ~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 15 NTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred ccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 67777655544422 1467899999999999999999988643 2 589999864 44667777777777742
Q ss_pred CCCC-----------CCCCCHHHHHHHHHHHhc--CCcEEEEEcccCCcc--ccc-ccccCCCCCCCCCcEEEEEccchh
Q 003265 175 VGDS-----------WKSRSAEEKALDIFRSLR--GKRIVLLLDDIWERV--DLT-KVGVPLPGPQNTTSKVVFTTRFID 238 (835)
Q Consensus 175 ~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--~~~-~l~~~l~~~~~~~s~IivTtR~~~ 238 (835)
.... ....+.......+...+. +.+++|||||+.... ... .+...+. ....+.++|||||...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSRNLP 163 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeCCCC
Confidence 2110 011223334444444443 689999999994321 122 2222222 3445678889999742
Q ss_pred hhh--cc-CCCceEEec----cCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCcc-HH
Q 003265 239 VCG--SM-EADRKFLVA----CLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKK-AE 310 (835)
Q Consensus 239 v~~--~~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~-~~ 310 (835)
-.. .. -......+. +|+.+|+.++|....+..- + .+....|.+.|+|.|+++..++..+..... ..
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~ 237 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNNSSLH 237 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh
Confidence 111 11 112344555 8999999999988765422 1 355778999999999999998877754321 11
Q ss_pred H-HHhhhCC-CcchhhHHHH-HHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHHH
Q 003265 311 Q-WRQFAGL-GKEVYPLLKF-SYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDT 387 (835)
Q Consensus 311 ~-w~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~ 387 (835)
. -....+. ...+...+.- .++.||+ ..+..+...|+++ .++.+ +.. .+.. .+.+.+.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~~-------~~~~~~~L~~ 300 (903)
T PRK04841 238 DSARRLAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVTG-------EENGQMRLEE 300 (903)
T ss_pred hhhHhhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHcC-------CCcHHHHHHH
Confidence 1 1112121 2345555444 4789999 8999999999987 23322 221 1111 2345677999
Q ss_pred HHHhccccc-c--cccccchhHHHHHHHHHHH
Q 003265 388 LVRACLLEE-V--EDDKVKMHDVIRDMALWIT 416 (835)
Q Consensus 388 L~~~~ll~~-~--~~~~~~mhdlv~~~a~~~~ 416 (835)
|.+.+++.. . +...|+.|++++++.+...
T Consensus 301 l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 301 LERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 999999653 2 2346889999999987654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=2.5e-14 Score=126.98 Aligned_cols=134 Identities=29% Similarity=0.439 Sum_probs=84.0
Q ss_pred CccccCCceEEEEeeeCCccccCCC-CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccc--ccCchHh
Q 003265 438 PDVKRWENVRRLSLMQNQIETLSEV-PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSF--QLPVGMS 514 (835)
Q Consensus 438 ~~~~~~~~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~--~lp~~i~ 514 (835)
|++.++.+++.+.+.+|.++.+|.. +.+++|+.|.+..|....+|.+ |+.++.|++|||++| ++. .+|..++
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltyn----nl~e~~lpgnff 124 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYN----NLNENSLPGNFF 124 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhcccc----ccccccCCcchh
Confidence 3444555666666666666666554 6666666666664433344444 666666666666666 333 3666666
Q ss_pred hhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 515 ELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 515 ~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
.+. .|+.|+|+.|.+.-+|..+++|++||.|.++.| .+-.+|.+ ++.|+.|++|++.+|...
T Consensus 125 ~m~-tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 125 YMT-TLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHH-HHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee
Confidence 666 666666666666666666666666666666666 55566666 666666666666666544
No 23
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.27 E-value=1.4e-11 Score=125.50 Aligned_cols=195 Identities=20% Similarity=0.209 Sum_probs=102.2
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH---------H
Q 003265 97 VVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE---------D 167 (835)
Q Consensus 97 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~---------~ 167 (835)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+.. +..-..++|+...+......+.. .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 78999999999999988778899999999999999999999987 22111344544433332211111 1
Q ss_pred HHHHhCCCCCC--------CCCCCHHHHHHHHHHHh--cCCcEEEEEcccCCcc-cc-------ccc---ccCCCCCCCC
Q 003265 168 IGKKIGLVGDS--------WKSRSAEEKALDIFRSL--RGKRIVLLLDDIWERV-DL-------TKV---GVPLPGPQNT 226 (835)
Q Consensus 168 i~~~l~~~~~~--------~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-~~-------~~l---~~~l~~~~~~ 226 (835)
+.+.+...... ............+.+.+ .+++++||+||+.... .. ..+ ..... ...+
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCC
Confidence 11112111100 01122233344444444 3356999999995443 11 111 11111 2333
Q ss_pred CcEEEEEccchhhhhc--------cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 227 TSKVVFTTRFIDVCGS--------MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 227 ~s~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.+.|+++|. ..+... .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 344444444 333221 2223459999999999999999976443 111 12245669999999999998865
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=4.5e-10 Score=123.79 Aligned_cols=292 Identities=14% Similarity=0.091 Sum_probs=165.9
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.++||++++++|...+.+ .....+.|+|++|+|||++++.++++. ......-..+++++....+...++..|+++
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 699999999999888743 344668899999999999999999987 222222346777777777788999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEcccCCcc------cccccccCCCCCCCCCc--EEEEEccchhhhh
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLR--GKRIVLLLDDIWERV------DLTKVGVPLPGPQNTTS--KVVFTTRFIDVCG 241 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~~~s--~IivTtR~~~v~~ 241 (835)
+..........+..+....+.+.+. +++.+||||+++... .+..+...+. ...++ .+|.++....+..
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~--~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE--EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh--ccCCCeEEEEEEECCcchhh
Confidence 8753221233456677777777774 456899999997532 1223322221 11222 3555555443222
Q ss_pred cc-------CCCceEEeccCChHHHHHHHHHHhCCC---CcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhc--C---
Q 003265 242 SM-------EADRKFLVACLSEKDAWELFREKVGEE---TLKSDHDIAELAQIVAKECVGLPLALITIGRAMAY--R--- 306 (835)
Q Consensus 242 ~~-------~~~~~~~l~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~--~--- 306 (835)
.. -....+.+.+++.++..+++..++... ..-.+..++.+++......|..+.|+..+-.+... .
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 11 113467899999999999999876321 11122223333443433356677887776543211 1
Q ss_pred --ccHHHHHh-hhCCCcchhhHHHHHHhcCCCchhhHHHhhhccC-CC-CccccHHHHHHH--HHhcCCccCCcccchHh
Q 003265 307 --KKAEQWRQ-FAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLY-SE-DYGILKWDLIDC--WIGEGFLGESDRFGAEN 379 (835)
Q Consensus 307 --~~~~~w~~-~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~f-p~-~~~i~~~~li~~--W~a~g~i~~~~~~~~~~ 379 (835)
-+....+. .... -.....-.+..||. +.|..+..++.. .. ...+....+... .+++.+-. ......
T Consensus 268 ~~I~~~~v~~a~~~~---~~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~---~~~~~~ 340 (394)
T PRK00411 268 RKVTEEDVRKAYEKS---EIVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY---EPRTHT 340 (394)
T ss_pred CCcCHHHHHHHHHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC---CcCcHH
Confidence 12222222 1111 12233456778887 455443333321 11 123444444332 22221100 011234
Q ss_pred hHHHHHHHHHHhcccccc
Q 003265 380 QGYDILDTLVRACLLEEV 397 (835)
Q Consensus 380 ~~~~~~~~L~~~~ll~~~ 397 (835)
...+++..|...|++...
T Consensus 341 ~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 341 RFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHHHHhcCCeEEE
Confidence 456678888888887653
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=1.3e-12 Score=131.47 Aligned_cols=146 Identities=25% Similarity=0.263 Sum_probs=97.0
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCCC--CCCCcceEEEeccCCcccccchhhcCCCcceEEEeec-CC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEV--PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSY-CG 501 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~-~~ 501 (835)
..+...+.++.++|. .-+.....|.|..|.+..+|.. ..+++||.|+|+.|+...|.++.|.+++.|-.|-+.+ |
T Consensus 49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N- 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN- 126 (498)
T ss_pred ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC-
Confidence 345555666666663 2234666777777777777654 6777777777775544467777777777766665554 5
Q ss_pred CCccccccCch-HhhhhhcccEEeeccccccccc-hhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcC
Q 003265 502 QSWSSFQLPVG-MSELGSSLQLFDISLTLIKELP-EELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTG 577 (835)
Q Consensus 502 ~~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 577 (835)
.|+++|.. ++.|. .|+-|.+.-|++..++ ..+..|++|..|.+.+| .++.++.+.+..+..++++.+..+.
T Consensus 127 ---kI~~l~k~~F~gL~-slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 127 ---KITDLPKGAFGGLS-SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ---chhhhhhhHhhhHH-HHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 77777765 34565 7777777777777664 34666777777777777 6677776557777777777766554
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=1e-09 Score=114.17 Aligned_cols=182 Identities=14% Similarity=0.182 Sum_probs=114.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
...+++.|+|++|+||||+++.+++.. .. ... ..+|+ +....+..+++..|+..++.+.. ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 445689999999999999999999987 21 221 22333 33345677889999998876532 2233333334433
Q ss_pred H-----hcCCcEEEEEcccCCcc--cccccccCC--CCCCCCCcEEEEEccchhhhhcc----------CCCceEEeccC
Q 003265 194 S-----LRGKRIVLLLDDIWERV--DLTKVGVPL--PGPQNTTSKVVFTTRFIDVCGSM----------EADRKFLVACL 254 (835)
Q Consensus 194 ~-----l~~k~~LlVlDdv~~~~--~~~~l~~~l--~~~~~~~s~IivTtR~~~v~~~~----------~~~~~~~l~~L 254 (835)
. ..+++.++|+||++... .++.+.... ..+......|++|.... ....+ .....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 26788999999997642 344333211 10222333555665432 11111 11346789999
Q ss_pred ChHHHHHHHHHHhCCCCcC-CChhHHHHHHHHHHHcCCcchHHHHHHHHH
Q 003265 255 SEKDAWELFREKVGEETLK-SDHDIAELAQIVAKECVGLPLALITIGRAM 303 (835)
Q Consensus 255 ~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 303 (835)
+.+|..+++...+...... ...-..+..+.|++.++|.|..|+.++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999998876432211 111235788999999999999999988765
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=6.6e-12 Score=134.56 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=16.7
Q ss_pred CCCccEEeEecCCCCCCC--chhh-c----cCCccEEeeecCc
Q 003265 690 FRSLHLVAIYECHKLKDL--TFLV-F----APSLKSLSLYGCN 725 (835)
Q Consensus 690 ~~~L~~L~L~~c~~l~~l--~~l~-~----l~~L~~L~L~~~~ 725 (835)
+++|+.|++++| .+.+. ..+. . .+.|+.|++++|.
T Consensus 220 ~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 220 LKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 455666666665 23321 1111 1 2566666666553
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.18 E-value=2.3e-09 Score=119.44 Aligned_cols=288 Identities=17% Similarity=0.171 Sum_probs=189.9
Q ss_pred cccchHHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~ 173 (835)
..|-|. ++++.|.. ...+.+.|..|+|.|||||+.+..... ..-..+.|.+++.. .++..+...++..++
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 566665 45555555 478999999999999999999998733 34457999998765 467888888888876
Q ss_pred CCCCC-----------CCCCCHHHHHHHHHHHhcC--CcEEEEEcccC---CcccccccccCCCCCCCCCcEEEEEccch
Q 003265 174 LVGDS-----------WKSRSAEEKALDIFRSLRG--KRIVLLLDDIW---ERVDLTKVGVPLPGPQNTTSKVVFTTRFI 237 (835)
Q Consensus 174 ~~~~~-----------~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~---~~~~~~~l~~~l~~~~~~~s~IivTtR~~ 237 (835)
.-.+. ....+...+...+...+.. ++..+||||.. +..--..+...+. ....+-..|||||+.
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~-~~P~~l~lvv~SR~r 170 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK-HAPENLTLVVTSRSR 170 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH-hCCCCeEEEEEeccC
Confidence 32211 1233444555666665543 68999999963 2222222333333 455678899999986
Q ss_pred hhh---hccCCCceEEec----cCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHH
Q 003265 238 DVC---GSMEADRKFLVA----CLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAE 310 (835)
Q Consensus 238 ~v~---~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~ 310 (835)
.-. ..--.....++. .|+.+|+.++|....+..- -+.-.+.+.+..+|-+-|+..++=.++...+..
T Consensus 171 P~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~ 244 (894)
T COG2909 171 PQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAE 244 (894)
T ss_pred CCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHH
Confidence 432 211112233332 4899999999988764322 134577888999999999999987777433332
Q ss_pred H-HHhhhCCCcchhhH-HHHHHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHHHH
Q 003265 311 Q-WRQFAGLGKEVYPL-LKFSYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDTL 388 (835)
Q Consensus 311 ~-w~~~~~~~~~~~~~-l~~sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~L 388 (835)
. -...++..+-+..- ..--++.||+ +++..++.||+++.= -..|+.. -+.++.+..++++|
T Consensus 245 q~~~~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~------------Ltg~~ng~amLe~L 307 (894)
T COG2909 245 QSLRGLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNA------------LTGEENGQAMLEEL 307 (894)
T ss_pred HHhhhccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHH------------HhcCCcHHHHHHHH
Confidence 2 22233332333332 3446789999 899999999998642 1223221 23356777889999
Q ss_pred HHhcccccc---cccccchhHHHHHHHHHH
Q 003265 389 VRACLLEEV---EDDKVKMHDVIRDMALWI 415 (835)
Q Consensus 389 ~~~~ll~~~---~~~~~~mhdlv~~~a~~~ 415 (835)
.+++++-.. ....|+.|.++.+|.+..
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 999997643 566899999999997643
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=2.4e-12 Score=129.56 Aligned_cols=109 Identities=24% Similarity=0.307 Sum_probs=90.8
Q ss_pred CcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEeecc-ccccccchh-hcCCCC
Q 003265 466 PHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDISL-TLIKELPEE-LKKLVN 542 (835)
Q Consensus 466 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L~~-~~i~~Lp~~-i~~L~~ 542 (835)
+....+.|..|....+|+..|+.+++||.||||+| .|+.| |..+..+. .|-.|-+-+ |+|+.+|.. |+.|..
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N----~Is~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN----NISFIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceeccccc----chhhcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 34577888866655999999999999999999999 88887 55666777 666665555 899999875 788999
Q ss_pred CcEEecccccccCCcchHHhccCcccceeeecCcCccC
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
|+.|.+.-| .+.-++.+++..|++|..|.+..|.+..
T Consensus 142 lqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 142 LQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred HHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhh
Confidence 999999888 7888998889999999999999887653
No 30
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.14 E-value=6.7e-09 Score=113.30 Aligned_cols=294 Identities=15% Similarity=0.152 Sum_probs=166.1
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---CeEEEEEecCccCHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF---DCVIWVVVSKDLRLEKLQEDI 168 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~i 168 (835)
.++||++++++|...+.. .....+.|+|++|+|||++++.++++........ -..+|+++....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 699999999999999864 3456799999999999999999998762111111 246788887777778899999
Q ss_pred HHHhC---CCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccCCcc-c----ccccccC--CCCCCCCCcEEEEEccc
Q 003265 169 GKKIG---LVGDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIWERV-D----LTKVGVP--LPGPQNTTSKVVFTTRF 236 (835)
Q Consensus 169 ~~~l~---~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-~----~~~l~~~--l~~~~~~~s~IivTtR~ 236 (835)
++++. ... +....+..+....+.+.+ .+++++||||+++... . +..+... ..........+|.++..
T Consensus 96 ~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 96 ANQLRGSGEEV-PTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHhhcCCCC-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 99884 221 112234555566666666 3567899999997541 1 1222211 11011123344555543
Q ss_pred hhhhhcc----C---CCceEEeccCChHHHHHHHHHHhCC--CCcCCChhHHHHHHHHHHHcCCcchHH-HHHHHHH--h
Q 003265 237 IDVCGSM----E---ADRKFLVACLSEKDAWELFREKVGE--ETLKSDHDIAELAQIVAKECVGLPLAL-ITIGRAM--A 304 (835)
Q Consensus 237 ~~v~~~~----~---~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPlai-~~~~~~l--~ 304 (835)
......+ . ....+.+++++.++..+++..++.. .....+++..+....++..+.|.|-.+ ..+-.+. .
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3221111 1 1256889999999999999988741 111223344455566777778887443 3332221 1
Q ss_pred cC-----ccHHHHHh-hhCCCcchhhHHHHHHhcCCCchhhHHHhhhccC--CCCccccHHHHHHHH--HhcCCccCCcc
Q 003265 305 YR-----KKAEQWRQ-FAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLY--SEDYGILKWDLIDCW--IGEGFLGESDR 374 (835)
Q Consensus 305 ~~-----~~~~~w~~-~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~f--p~~~~i~~~~li~~W--~a~g~i~~~~~ 374 (835)
.. -+.+..+. .... -.....-++..||. +.+..+..++.. ..+..+....+...+ +++.+ . -.
T Consensus 255 ~~~~~~~it~~~v~~a~~~~---~~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~--~~ 327 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKI---EKDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-G--VD 327 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHH---HHHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-C--CC
Confidence 10 11111111 1111 11233445677887 555444433311 133345555555532 12211 1 11
Q ss_pred cchHhhHHHHHHHHHHhcccccc
Q 003265 375 FGAENQGYDILDTLVRACLLEEV 397 (835)
Q Consensus 375 ~~~~~~~~~~~~~L~~~~ll~~~ 397 (835)
........+++..|...|++...
T Consensus 328 ~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 328 PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEE
Confidence 23346677788888888888764
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.13 E-value=5.9e-10 Score=118.15 Aligned_cols=268 Identities=16% Similarity=0.099 Sum_probs=147.9
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
.|||+++.+++|..++.. .....+.++|++|+|||+||+.+++.. ...+ ..+..+.......+ ...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhH-HHHHH
Confidence 689999999999888863 345668899999999999999999987 2222 12222111111222 22222
Q ss_pred HhCCCC----CCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhhcc--C
Q 003265 171 KIGLVG----DSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSM--E 244 (835)
Q Consensus 171 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~--~ 244 (835)
.++... ++....+ ....+.+...+.+.+..+|+|+..+...+.. .+ .+.+-|..||+...+...+ .
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~----~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL----PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC----CCeEEEEecCCccccCHHHHhh
Confidence 222111 0001111 1223445556666666677776544433321 22 2345666777765443321 1
Q ss_pred CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHhhhCCC----c
Q 003265 245 ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQFAGLG----K 320 (835)
Q Consensus 245 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~~----~ 320 (835)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+... .......... .
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~---a~~~~~~~it~~~v~ 223 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDF---AQVRGQKIINRDIAL 223 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHH---HHHcCCCCcCHHHHH
Confidence 1346789999999999999988865443222 3567889999999997766555433210 0000000000 1
Q ss_pred chhhHHHHHHhcCCCchhhHHHh-hhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHH-HHHHhcccccc
Q 003265 321 EVYPLLKFSYDSLQNDTIRSCFL-YCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILD-TLVRACLLEEV 397 (835)
Q Consensus 321 ~~~~~l~~sy~~L~~~~~k~cf~-~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~-~L~~~~ll~~~ 397 (835)
.....+...|..++. ..+..+. ..+.++.+ .+..+.+.... ......+...++ .|++++++...
T Consensus 224 ~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 224 KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------GEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh-----------CCCcchHHHhhhHHHHHcCCcccC
Confidence 122224455667776 5555444 44555433 33333332221 112345566677 69999999765
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=9.5e-11 Score=125.61 Aligned_cols=116 Identities=20% Similarity=0.074 Sum_probs=62.5
Q ss_pred ccceeeecCCCCCCCcc--cccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCC--
Q 003265 631 SCIRSLFLPLAGDATSI--IDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKD-- 706 (835)
Q Consensus 631 ~~L~~L~l~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-- 706 (835)
++|+.|++++|...... .....+..+++|+.|++++|. +.+..+..+.. ... ...+.|++|++.+| .+++
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~--~~~--~~~~~L~~L~l~~n-~i~~~~ 266 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALAS--ALL--SPNISLLTLSLSCN-DITDDG 266 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHH--HHh--ccCCCceEEEccCC-CCCcHH
Confidence 35666666655432111 111245567789999998865 22211222110 000 02478999999998 4542
Q ss_pred ---C-chhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCC-CcccEeecCCC
Q 003265 707 ---L-TFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPF-GNLQTLDLSRL 760 (835)
Q Consensus 707 ---l-~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~ 760 (835)
+ ..+..+++|++|++++|.....-.. ........+ +.|+.|++.+.
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQ--------LLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCCCcHHHHH--------HHHHHHhhcCCchhhcccCCC
Confidence 1 1345678999999998765433110 011133445 67777777653
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=8.5e-10 Score=117.59 Aligned_cols=265 Identities=14% Similarity=0.094 Sum_probs=146.8
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
.|+|+++.++.+...+.. .....+.|+|++|+|||+||+.+++.. ...+ .++..+. ......+..++.
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~-~~~~~~l~~~l~ 98 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPA-LEKPGDLAAILT 98 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEeccc-ccChHHHHHHHH
Confidence 689999999998877752 345678899999999999999999987 2222 1122111 111122223333
Q ss_pred HhCCCC----CCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhhccC--
Q 003265 171 KIGLVG----DSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSME-- 244 (835)
Q Consensus 171 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~-- 244 (835)
.+.... ++..... ....+.+...+.+.+..+|+|+..+..... ..+ .+.+-|..|++...+...+.
T Consensus 99 ~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l----~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL----PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecC----CCceEEeecCCcccCCHHHHHh
Confidence 332111 0000000 112233444555556666666643322211 111 22455666777554433221
Q ss_pred CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHhhh---CCC--
Q 003265 245 ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQFA---GLG-- 319 (835)
Q Consensus 245 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~~~---~~~-- 319 (835)
....+.+++++.++..+++.+.+.......+ .+.+..|++.|+|.|-.+..+...+. .|.... ...
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~~~I~~~ 241 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGDGVITKE 241 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCCCCCCHH
Confidence 1346899999999999999998876543333 36788999999999966555554322 222111 111
Q ss_pred --cchhhHHHHHHhcCCCchhhHHHh-hhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHH-HHHHhcccc
Q 003265 320 --KEVYPLLKFSYDSLQNDTIRSCFL-YCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILD-TLVRACLLE 395 (835)
Q Consensus 320 --~~~~~~l~~sy~~L~~~~~k~cf~-~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~-~L~~~~ll~ 395 (835)
......+...+..|++ ..+..+. ....|+.+ .+..+.+.... ....+.+++.++ .|++.+|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----------g~~~~~~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-----------GEERDTIEDVYEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-----------CCCcchHHHHhhHHHHHcCCcc
Confidence 1222334445566766 4555553 55556554 34444443221 122345555566 899999997
Q ss_pred cc
Q 003265 396 EV 397 (835)
Q Consensus 396 ~~ 397 (835)
..
T Consensus 309 ~~ 310 (328)
T PRK00080 309 RT 310 (328)
T ss_pred cC
Confidence 65
No 34
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=2.1e-09 Score=102.87 Aligned_cols=143 Identities=19% Similarity=0.232 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCeEEEEEecCccCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLE---KLQEDIGKKIGLVGDSWKSRSAEEKAL 189 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 189 (835)
+++.|+|.+|+||||+++.++.+. ..... +...+|+......... .+...|..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL-AEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH-HhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 589999999999999999999887 22222 4567777766554332 34444444433211 11111
Q ss_pred HHHHH-hcCCcEEEEEcccCCccc---------ccc-cccCCCCCCCCCcEEEEEccchhh---hhccCCCceEEeccCC
Q 003265 190 DIFRS-LRGKRIVLLLDDIWERVD---------LTK-VGVPLPGPQNTTSKVVFTTRFIDV---CGSMEADRKFLVACLS 255 (835)
Q Consensus 190 ~l~~~-l~~k~~LlVlDdv~~~~~---------~~~-l~~~l~~~~~~~s~IivTtR~~~v---~~~~~~~~~~~l~~L~ 255 (835)
.+... .+.+++++|||++++... +.. +...++....++++|+||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 22222 257899999999965322 112 222233123568999999998665 3444555689999999
Q ss_pred hHHHHHHHHHHhC
Q 003265 256 EKDAWELFREKVG 268 (835)
Q Consensus 256 ~~~~~~lf~~~~~ 268 (835)
+++..+++.+.+.
T Consensus 152 ~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 152 EEDIKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988763
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=8.5e-09 Score=121.89 Aligned_cols=301 Identities=16% Similarity=0.182 Sum_probs=179.9
Q ss_pred cccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc---CHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL---RLEKLQEDIG 169 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~~i~ 169 (835)
+++||+.+++.|...+.. +...++.+.|..|||||+|+++|.....+..+.|-...+-....+. .....+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 478999999999988865 5667999999999999999999999873221222111111111221 2334445555
Q ss_pred HHhCCCCC----------------------------------C-----CCCCCHHH-----HHHHHHHHh-cCCcEEEEE
Q 003265 170 KKIGLVGD----------------------------------S-----WKSRSAEE-----KALDIFRSL-RGKRIVLLL 204 (835)
Q Consensus 170 ~~l~~~~~----------------------------------~-----~~~~~~~~-----~~~~l~~~l-~~k~~LlVl 204 (835)
.++....+ + ........ ....+.... +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 54411100 0 00111111 122223333 457999999
Q ss_pred ccc-CCcc-cccccccCCCCCCC----CCcEE--EEEccch--hhhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCC
Q 003265 205 DDI-WERV-DLTKVGVPLPGPQN----TTSKV--VFTTRFI--DVCGSMEADRKFLVACLSEKDAWELFREKVGEETLKS 274 (835)
Q Consensus 205 Ddv-~~~~-~~~~l~~~l~~~~~----~~s~I--ivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 274 (835)
||+ |-+. .+.-+..... ... ....| +.|.+.. .+-..-.....+.|.||+..+.-.+.....+...
T Consensus 161 eDlhWaD~~SL~lL~~lm~-~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMD-RIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--- 236 (849)
T ss_pred ecccccChhHHHHHHHHHH-hcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---
Confidence 999 6432 2221111111 110 01122 2222321 2222233457899999999999999999987633
Q ss_pred ChhHHHHHHHHHHHcCCcchHHHHHHHHHhcC------ccHHHHHh------hhCCCcchhhHHHHHHhcCCCchhhHHH
Q 003265 275 DHDIAELAQIVAKECVGLPLALITIGRAMAYR------KKAEQWRQ------FAGLGKEVYPLLKFSYDSLQNDTIRSCF 342 (835)
Q Consensus 275 ~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~------~~~~~w~~------~~~~~~~~~~~l~~sy~~L~~~~~k~cf 342 (835)
....+....|+++..|+|+.+..+-..+... .+...|.. ....-+.+...+..-.+.||. ..++.+
T Consensus 237 -~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~-~t~~Vl 314 (849)
T COG3899 237 -LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPG-TTREVL 314 (849)
T ss_pred -cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCH-HHHHHH
Confidence 2234678899999999999999999888774 33444444 111222355568889999999 899999
Q ss_pred hhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHHHHHHhcccccc-------ccc---ccchhHHHHHHH
Q 003265 343 LYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDTLVRACLLEEV-------EDD---KVKMHDVIRDMA 412 (835)
Q Consensus 343 ~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~-------~~~---~~~mhdlv~~~a 412 (835)
...|++...+. .+.|...+- ......+....+.|.+..++... ... +-..|+++++.|
T Consensus 315 ~~AA~iG~~F~--l~~La~l~~----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaa 382 (849)
T COG3899 315 KAAACIGNRFD--LDTLAALAE----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAA 382 (849)
T ss_pred HHHHHhCccCC--HHHHHHHHh----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHH
Confidence 99999986554 555555442 13455666666677666666421 112 226788888877
Q ss_pred HH
Q 003265 413 LW 414 (835)
Q Consensus 413 ~~ 414 (835)
-.
T Consensus 383 Y~ 384 (849)
T COG3899 383 YN 384 (849)
T ss_pred hc
Confidence 43
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=1.2e-09 Score=102.79 Aligned_cols=132 Identities=27% Similarity=0.254 Sum_probs=45.6
Q ss_pred cCCccccCCceEEEEeeeCCccccCCCC-CCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHh
Q 003265 436 EAPDVKRWENVRRLSLMQNQIETLSEVP-KCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMS 514 (835)
Q Consensus 436 ~~~~~~~~~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~ 514 (835)
..+...++.+.|.|++.+|.+..+.... .+.+|++|++++|....+.. +..++.|+.|++++| .|+.++..+.
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N----~I~~i~~~l~ 84 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN----RISSISEGLD 84 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS-------S-CHHHH
T ss_pred cccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC----CCCccccchH
Confidence 3444455567788888888888776654 57788888888555445543 677888888888888 7777765554
Q ss_pred -hhhhcccEEeeccccccccc--hhhcCCCCCcEEecccccccCCcc---hHHhccCcccceeeecC
Q 003265 515 -ELGSSLQLFDISLTLIKELP--EELKKLVNLKCLNLRWAYRLNKIP---RQLISNYSRLCVLRMFG 575 (835)
Q Consensus 515 -~l~~~L~~L~L~~~~i~~Lp--~~i~~L~~L~~L~L~~~~~l~~lp---~~~i~~L~~L~~L~l~~ 575 (835)
.++ +|+.|+|++|+|..+- ..+..+++|++|++.+|+ +..-+ ..++..+++|+.||-..
T Consensus 85 ~~lp-~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 85 KNLP-NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp HH-T-T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HhCC-cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 455 8888888888776652 345667788888888774 32222 23466777777776653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.6e-09 Score=101.78 Aligned_cols=118 Identities=28% Similarity=0.323 Sum_probs=35.1
Q ss_pred eCCccccCCCCCCCcceEEEeccCCcccccchhhc-CCCcceEEEeecCCCCccccccCchHhhhhhcccEEeecccccc
Q 003265 453 QNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQ-FMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIK 531 (835)
Q Consensus 453 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~ 531 (835)
.+.++..+...++.+++.|+|.+|....+. . +. .+.+|++|+|++| .|..++ .+..+. +|++|++++|.|+
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~-L~~~l~~L~~L~Ls~N----~I~~l~-~l~~L~-~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIE-N-LGATLDKLEVLDLSNN----QITKLE-GLPGLP-RLKTLDLSNNRIS 77 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-TTS------S--T-T----T-T--EEE--SS---
T ss_pred cccccccccccccccccccccccccccccc-c-hhhhhcCCCEEECCCC----CCcccc-CccChh-hhhhcccCCCCCC
Confidence 344555555566667778888766543332 2 33 4677788888888 677665 466676 7888888888777
Q ss_pred ccchhh-cCCCCCcEEecccccccCCcch-HHhccCcccceeeecCcCcc
Q 003265 532 ELPEEL-KKLVNLKCLNLRWAYRLNKIPR-QLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 532 ~Lp~~i-~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 579 (835)
.++..+ ..+++|++|++++| .+..+.. ..+..+++|++|++.+|.+.
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 776555 35777888888777 4444321 11566777777777777665
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=8.9e-11 Score=123.81 Aligned_cols=166 Identities=23% Similarity=0.260 Sum_probs=89.9
Q ss_pred EEEEeeeCCccccCCC-CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEV-PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L 525 (835)
...+++.|.+..+|.. ..|-.|..+.+..|..-.+|.. +.++..|.+|+|+.| .+..+|..++.|+ |+.|-+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N----qlS~lp~~lC~lp--Lkvli~ 150 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN----QLSHLPDGLCDLP--LKVLIV 150 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc----hhhcCChhhhcCc--ceeEEE
Confidence 3444555555555443 4455555555553332244443 556666666666666 5666666666653 666666
Q ss_pred ccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCC
Q 003265 526 SLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLK 605 (835)
Q Consensus 526 ~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 605 (835)
++|+++.+|..++.+..|.+||.+.| .+..+|.. ++.|.+|+.|.+..|.+.. .+.++..|+
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~----------------lp~El~~Lp 212 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLED----------------LPEELCSLP 212 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhh----------------CCHHHhCCc
Confidence 66666666666665566666666665 45556655 6666666666666555443 344444332
Q ss_pred CCCeEEEEecchhhHHHHhhcccccccceeeecCCC
Q 003265 606 YLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLA 641 (835)
Q Consensus 606 ~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 641 (835)
|..|++++|.+..++--. ..+++|+.|.|.+|
T Consensus 213 -Li~lDfScNkis~iPv~f---r~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 -LIRLDFSCNKISYLPVDF---RKMRHLQVLQLENN 244 (722)
T ss_pred -eeeeecccCceeecchhh---hhhhhheeeeeccC
Confidence 555555555554443222 12345555555554
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.87 E-value=1.3e-08 Score=102.27 Aligned_cols=154 Identities=13% Similarity=0.180 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
..+.+.|+|++|+|||+|++.+++.. ......+.|+.+.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 44678999999999999999999987 2223345677653210 0000 11111
Q ss_pred hcCCcEEEEEcccCCc---ccccc-cccCCCCCCCCCcEEE-EEccc---------hhhhhccCCCceEEeccCChHHHH
Q 003265 195 LRGKRIVLLLDDIWER---VDLTK-VGVPLPGPQNTTSKVV-FTTRF---------IDVCGSMEADRKFLVACLSEKDAW 260 (835)
Q Consensus 195 l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~~~~~s~Ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~ 260 (835)
++ +.-+|||||+|.. .+|.. +...+......|..+| +|+.. +.+.+.+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 21 2348999999853 33432 2222221122355554 45544 345556666678999999999999
Q ss_pred HHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHH
Q 003265 261 ELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGR 301 (835)
Q Consensus 261 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 301 (835)
+++.+.+.......+ +++..-|++.+.|..-++..+-.
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 999998865443333 46778888889887766555443
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=3.4e-10 Score=115.35 Aligned_cols=293 Identities=16% Similarity=0.161 Sum_probs=163.1
Q ss_pred CcceEEEeccCCcc--cccchhhcCCCcceEEEeecCCCCccccc-cCchHhhhhhcccEEeeccc-ccccc--chhhcC
Q 003265 466 PHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQ-LPVGMSELGSSLQLFDISLT-LIKEL--PEELKK 539 (835)
Q Consensus 466 ~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~-lp~~i~~l~~~L~~L~L~~~-~i~~L--p~~i~~ 539 (835)
..|+.|.+.|+... .-...+-.+++++..|.+.+|. .++. .-.++....++|++|+|..| .|+.. -.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~---~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK---KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce---eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 56899999988876 3334556889999999999995 4443 22345544458999999886 56543 223456
Q ss_pred CCCCcEEecccccccCC--cchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEec-c
Q 003265 540 LVNLKCLNLRWAYRLNK--IPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLG-S 616 (835)
Q Consensus 540 L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~ 616 (835)
+++|.+|++++|..+.. +-. ...++.+|+.+...||.-.+. ......-+....+.++++... .
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~-~~rG~~~l~~~~~kGC~e~~l-------------e~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQA-LQRGCKELEKLSLKGCLELEL-------------EALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred hhhHHHhhhccCchhhcCcchH-HhccchhhhhhhhcccccccH-------------HHHHHHhccChHhhccchhhhcc
Confidence 88999999999976543 222 145566677776666543320 000000111122222332111 1
Q ss_pred hhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEE
Q 003265 617 YHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLV 696 (835)
Q Consensus 617 ~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 696 (835)
.+. ..+......+..|+.|..+++...+.........++.+|+.|-+.+|..+.+.....++ .+.+.|+.|
T Consensus 281 lTD-~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l 351 (483)
T KOG4341|consen 281 LTD-EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERL 351 (483)
T ss_pred ccc-hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhh
Confidence 111 11112222345667777776665544433333445667777777777766544444443 356777777
Q ss_pred eEecCCCCCCC--ch-hhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCC-CCC
Q 003265 697 AIYECHKLKDL--TF-LVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWK-PLP 772 (835)
Q Consensus 697 ~L~~c~~l~~l--~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~ 772 (835)
++.+|....+- .. -.++|.|+.|.|++|..+++.... .+.....+...|..|.+.+||.+..-... ...
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~-------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR-------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh-------hhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 77777544332 11 235677777777777766654110 00112345566777777777765543322 234
Q ss_pred CCCccEEEEecCCCcCCCCC
Q 003265 773 FTHLKEMAVTHGCNQLRKLP 792 (835)
Q Consensus 773 ~~~L~~L~i~~~C~~L~~lp 792 (835)
+++|+.+++. +|...++=|
T Consensus 425 c~~Leri~l~-~~q~vtk~~ 443 (483)
T KOG4341|consen 425 CRNLERIELI-DCQDVTKEA 443 (483)
T ss_pred Ccccceeeee-chhhhhhhh
Confidence 5677777776 666665443
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.84 E-value=2.5e-10 Score=116.28 Aligned_cols=299 Identities=15% Similarity=0.135 Sum_probs=156.4
Q ss_pred ceEEEEeeeCCcccc---CCC-CCCCcceEEEeccCCcc--cccchhhcCCCcceEEEeecCCCCccccccC-chHhhhh
Q 003265 445 NVRRLSLMQNQIETL---SEV-PKCPHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELG 517 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l---~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~ 517 (835)
.++.+++.+..-... ... ..||+++.|.+.+|..+ ....++-..++.|++|+|..|. .++... ..+..-.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~---~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS---SITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc---hhHHHHHHHHHHhh
Confidence 455666655433222 111 57777777777777655 2233334567778888888764 454422 2233333
Q ss_pred hcccEEeeccc-cccc--cchhhcCCCCCcEEecccccccCCcchHHhc----cCcccceeeecCcCccCcccCCCcccc
Q 003265 518 SSLQLFDISLT-LIKE--LPEELKKLVNLKCLNLRWAYRLNKIPRQLIS----NYSRLCVLRMFGTGWFNFHEAPEDSVL 590 (835)
Q Consensus 518 ~~L~~L~L~~~-~i~~--Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~----~L~~L~~L~l~~~~~~~~~~~~~~~~~ 590 (835)
++|+||++++| .|+. +-.-...+.+|+.+-++||. .++.+.+. ...-+..+++..|....
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lT---------- 282 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLT---------- 282 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhcccc----------
Confidence 47888888777 3443 22223345556666666763 23333232 23334555555554332
Q ss_pred cCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceeccccccc
Q 003265 591 FGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEEL 670 (835)
Q Consensus 591 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 670 (835)
+......-..+..|+.|..+......-..+........+|+.|.+..|...+.......-.++++|+.+++.+|...
T Consensus 283 ---D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 283 ---DEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred ---chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 11122222235566666665433211111112222345777777777765433332222335677777777776654
Q ss_pred ccccccchhcccccCCcccCCCccEEeEecCCCCCCC--ch----hhccCCccEEeeecCccchhhcccCccCCCccccc
Q 003265 671 EELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDL--TF----LVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMG 744 (835)
Q Consensus 671 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~~----l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 744 (835)
.+-.+...+ .+++.|+.|.|+.|..+++- -. -..+..|+.|.|++|+.+++..- .
T Consensus 360 ~d~tL~sls--------~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-----------e 420 (483)
T KOG4341|consen 360 TDGTLASLS--------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-----------E 420 (483)
T ss_pred hhhhHhhhc--------cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-----------H
Confidence 422111111 35777888888877655543 11 12466777788888777665422 2
Q ss_pred CCCCCCcccEeecCCCCccccccCC--CCCCCCccEEEE
Q 003265 745 HISPFGNLQTLDLSRLPILKSIYWK--PLPFTHLKEMAV 781 (835)
Q Consensus 745 ~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~~L~~L~i 781 (835)
.+..+++|+.+++.+|.....-+.. ...+|+++....
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 4556677777777777666544332 223455554443
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.3e-09 Score=111.93 Aligned_cols=212 Identities=18% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCCCcceEEEeccCCcccccc--hhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchh--hc
Q 003265 463 PKCPHLLTLFLDFNQELKIAD--GFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEE--LK 538 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~--i~ 538 (835)
.++.+|+.+.|. |..+..+. .....|++++.||||.|-+. ....+-.-+..|+ +|+.|+|+.|.+...-++ -.
T Consensus 118 sn~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLD-NYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeec-CccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcc-cchhcccccccccCCccccchh
Confidence 566667777776 33332222 34566677777777766211 1112222233444 666666666655443221 12
Q ss_pred CCCCCcEEecccccccCC--cchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecc
Q 003265 539 KLVNLKCLNLRWAYRLNK--IPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 616 (835)
Q Consensus 539 ~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 616 (835)
.+.+|+.|.|+.| .+.. +-. ....+++|+.|++..|....
T Consensus 195 ~l~~lK~L~l~~C-Gls~k~V~~-~~~~fPsl~~L~L~~N~~~~------------------------------------ 236 (505)
T KOG3207|consen 195 LLSHLKQLVLNSC-GLSWKDVQW-ILLTFPSLEVLYLEANEIIL------------------------------------ 236 (505)
T ss_pred hhhhhheEEeccC-CCCHHHHHH-HHHhCCcHHHhhhhcccccc------------------------------------
Confidence 3445555555555 2221 111 12234445555554442110
Q ss_pred hhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEE
Q 003265 617 YHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLV 696 (835)
Q Consensus 617 ~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 696 (835)
.. ......+..|+.|+|++++.... +.......++.|..|+++.|..-+.-.++... ......|++|+.|
T Consensus 237 ---~~--~~~~~i~~~L~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s----~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 237 ---IK--ATSTKILQTLQELDLSNNNLIDF-DQGYKVGTLPGLNQLNLSSTGIASIAEPDVES----LDKTHTFPKLEYL 306 (505)
T ss_pred ---ee--cchhhhhhHHhhccccCCccccc-ccccccccccchhhhhccccCcchhcCCCccc----hhhhcccccceee
Confidence 00 01111223566666666554322 22235666777777777765422211111100 0111358888888
Q ss_pred eEecCCC--CCCCchhhccCCccEEeeecCc
Q 003265 697 AIYECHK--LKDLTFLVFAPSLKSLSLYGCN 725 (835)
Q Consensus 697 ~L~~c~~--l~~l~~l~~l~~L~~L~L~~~~ 725 (835)
++..++- +..+..+..+++|+.|.+..+.
T Consensus 307 ~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 307 NISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ecccCccccccccchhhccchhhhhhccccc
Confidence 8888743 3334445567777777766544
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.80 E-value=2.2e-07 Score=104.68 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=125.1
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCCC--eEEEEEecCccCHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLES--PTNFD--CVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~~~ 166 (835)
.+.|||+++++|...|.. ....++.|+|++|+|||++++.|.+..... ..... .+++|.+..-.+...++.
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq 835 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ 835 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence 578999999999888864 233578899999999999999998876211 11111 367788877778888999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhc---CCcEEEEEcccCCcc--cccccccCCCCCCCCCcEEEE--Eccchh-
Q 003265 167 DIGKKIGLVGDSWKSRSAEEKALDIFRSLR---GKRIVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVF--TTRFID- 238 (835)
Q Consensus 167 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~Iiv--TtR~~~- 238 (835)
.|++++..... .......+....+...+. +...+||||+|+... .-+.+...+......+++|++ .+....
T Consensus 836 vI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 836 VLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 99988854331 122334455566666552 234599999996421 111121111111123445444 333211
Q ss_pred -------hhhccCCCceEEeccCChHHHHHHHHHHhCCCC-cCCChhHHHHHHHHHHHcCCcchHHHHHHHHHh
Q 003265 239 -------VCGSMEADRKFLVACLSEKDAWELFREKVGEET-LKSDHDIAELAQIVAKECVGLPLALITIGRAMA 304 (835)
Q Consensus 239 -------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 304 (835)
+...++ ...+...|++.++..+++..++.... .-.+..++-+|+.++...|-.-.||.++-.+..
T Consensus 915 perLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 915 PERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 222222 23467799999999999999886432 122233334445455555556777777765554
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.80 E-value=5.1e-08 Score=99.97 Aligned_cols=168 Identities=21% Similarity=0.202 Sum_probs=103.9
Q ss_pred cccchHHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQL---EQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.+||.+.-+ .-|.+++..+.+....+||++|+||||||+.++... ...|. .++...+-.+=+++++
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr~i~--- 93 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLREII--- 93 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHHHHH---
Confidence 566665544 235556667888888899999999999999999976 44543 2232222111112222
Q ss_pred CCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEcccC--CcccccccccCCCCCCCCCcEEEE--Eccchhh---hhccC
Q 003265 173 GLVGDSWKSRSAEEKALDIF-RSLRGKRIVLLLDDIW--ERVDLTKVGVPLPGPQNTTSKVVF--TTRFIDV---CGSME 244 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~s~Iiv--TtR~~~v---~~~~~ 244 (835)
+.-+ ....|++.+|++|+|. +..+-+.+. | .-..|..|+| ||.++.. ....+
T Consensus 94 ----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p-~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 94 ----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALL---P-HVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred ----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhh---h-hhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 2221 2234899999999995 334444443 3 3345777776 6776543 23334
Q ss_pred CCceEEeccCChHHHHHHHHHHhCCCCcCC---Ch-hHHHHHHHHHHHcCCcch
Q 003265 245 ADRKFLVACLSEKDAWELFREKVGEETLKS---DH-DIAELAQIVAKECVGLPL 294 (835)
Q Consensus 245 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~---~~-~~~~~~~~i~~~c~GlPl 294 (835)
-...+.+++|+.++..+++.+.+......- .. --++...-++..++|---
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 568999999999999999998543222111 11 113466778888888643
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.77 E-value=5.1e-08 Score=98.52 Aligned_cols=170 Identities=13% Similarity=0.133 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC
Q 003265 100 LQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW 179 (835)
Q Consensus 100 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 179 (835)
.+..++.+.+++.....+.+.|+|++|+|||+||+.+++.. .......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHH------hH-----------
Confidence 45567777777666667789999999999999999999886 22333456665543221 00
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc---cc-cccccCCCCCCCCCcEEEEEccchh---------hhhccCCC
Q 003265 180 KSRSAEEKALDIFRSLRGKRIVLLLDDIWERV---DL-TKVGVPLPGPQNTTSKVVFTTRFID---------VCGSMEAD 246 (835)
Q Consensus 180 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~~~~~~s~IivTtR~~~---------v~~~~~~~ 246 (835)
..+...+.+ .-+|||||+.... .| ..+...+......+.+||+|++... +...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011112222 2389999996432 22 2233222211123357888887532 22233334
Q ss_pred ceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHH
Q 003265 247 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRA 302 (835)
Q Consensus 247 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 302 (835)
..+++.+++.++...++...+.......+ .+..+.+++.+.|+|..+..+...
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 67999999999999999876543222222 356677888899999887776543
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=7.9e-10 Score=116.83 Aligned_cols=189 Identities=20% Similarity=0.184 Sum_probs=144.3
Q ss_pred EEeeeCCccccCCC---CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEee
Q 003265 449 LSLMQNQIETLSEV---PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDI 525 (835)
Q Consensus 449 l~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L 525 (835)
+.|++.....+|.. ..+..-...+++.|..-.+|.. ++.|-.|..|.|..| .+..+|..++++. .|.||||
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n----~~r~ip~~i~~L~-~lt~l~l 128 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN----CIRTIPEAICNLE-ALTFLDL 128 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc----cceecchhhhhhh-HHHHhhh
Confidence 44444444444432 4455556678886665577776 788889999999999 8999999999999 9999999
Q ss_pred ccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCC
Q 003265 526 SLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLK 605 (835)
Q Consensus 526 ~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 605 (835)
+.|++..+|..++.|. |+.|-+++| ++..+|.+ ++.+..|.+|+.+.|.+.. .+..++.|.
T Consensus 129 s~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~s----------------lpsql~~l~ 189 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQS----------------LPSQLGYLT 189 (722)
T ss_pred ccchhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhhh----------------chHHhhhHH
Confidence 9999999999998765 999999988 88999998 9999999999999887764 567788888
Q ss_pred CCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccc
Q 003265 606 YLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEE 669 (835)
Q Consensus 606 ~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 669 (835)
.|+.|.+..|....+..-+.. -.|.+|++++|+.. .++ ..+.+|.+|++|-|.+|+.
T Consensus 190 slr~l~vrRn~l~~lp~El~~----LpLi~lDfScNkis-~iP--v~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPEELCS----LPLIRLDFSCNKIS-YLP--VDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred HHHHHHHhhhhhhhCCHHHhC----CceeeeecccCcee-ecc--hhhhhhhhheeeeeccCCC
Confidence 888888887766555443332 24777888766544 333 3677888888888886654
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.8e-09 Score=109.40 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=45.3
Q ss_pred HhhhhhcccEEeeccccccccch--hhcCCCCCcEEecccccccCCcc--hHHhccCcccceeeecCcCcc
Q 003265 513 MSELGSSLQLFDISLTLIKELPE--ELKKLVNLKCLNLRWAYRLNKIP--RQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 513 i~~l~~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~ 579 (835)
=.++. +|+...|.++.+...+. ....|++++.|||++| -+..+- ..++..|++|+.|+++.|.+.
T Consensus 117 Qsn~k-kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 117 QSNLK-KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred hhhHH-hhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccccc
Confidence 34566 88888888887777763 6677888888888887 333322 123567888888888877655
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=1.9e-07 Score=102.67 Aligned_cols=175 Identities=19% Similarity=0.163 Sum_probs=106.3
Q ss_pred cccchHHHHHH---HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLEQ---VWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.+||++..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...| +.++....-.+-.+.++..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~~- 83 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIEE- 83 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHHH-
Confidence 68999888666 7788877777788999999999999999999876 2332 2222211111111122211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE--Eccchh--h-hhccC
Q 003265 173 GLVGDSWKSRSAEEKALDIFRS-LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF--TTRFID--V-CGSME 244 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv--TtR~~~--v-~~~~~ 244 (835)
.... ..+++.+|++|+++.. ...+.+...+. .+..+++ ||.+.. + ....+
T Consensus 84 ------------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 84 ------------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred ------------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhc
Confidence 1111 2467889999999753 23344433332 2444444 344332 1 11222
Q ss_pred CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHH
Q 003265 245 ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGR 301 (835)
Q Consensus 245 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 301 (835)
....+.+.+++.++...++.+.+.........-..+..+.|++.|+|.+..+..+..
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 346889999999999999998764311000012246678889999999877655443
No 49
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.3e-06 Score=88.41 Aligned_cols=200 Identities=21% Similarity=0.293 Sum_probs=131.7
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.+.+|+.+++++...|.. ....-+.|+|..|+|||+.++.+.++........+ +++|++....+...++..|+++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHH
Confidence 588999999999988764 33344999999999999999999999832222233 8999999999999999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccCCcccc--cccccCCCCCCCCCcEEEE--Eccchh-------
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIWERVDL--TKVGVPLPGPQNTTSKVVF--TTRFID------- 238 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~l~~~l~~~~~~~s~Iiv--TtR~~~------- 238 (835)
++... .......+....+.+.+ .++.+++|||+++....- +.+...+.......++|++ .+-+..
T Consensus 97 ~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 97 LGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred cCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 96221 23456677777777777 458899999999653222 2222222211112444433 333332
Q ss_pred -hhhccCCCceEEeccCChHHHHHHHHHHhC---CCCcCCChhHHHHHHHHHHHcCC-cchHHHHHH
Q 003265 239 -VCGSMEADRKFLVACLSEKDAWELFREKVG---EETLKSDHDIAELAQIVAKECVG-LPLALITIG 300 (835)
Q Consensus 239 -v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~~ 300 (835)
|.+.++.. .+...|-+.+|-.+++..++. ... ..+++.-+++..++..-+| .-.||..+-
T Consensus 175 rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 175 RVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 22333333 488999999999999998764 222 3344445555555555554 445555543
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=1.2e-08 Score=99.53 Aligned_cols=227 Identities=17% Similarity=0.153 Sum_probs=140.3
Q ss_pred cCCCcceEEEeecCCCCc---cc--cccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHH
Q 003265 487 QFMPSLKVLKMSYCGQSW---SS--FQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQL 561 (835)
Q Consensus 487 ~~l~~Lr~L~Ls~~~~~~---~i--~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~ 561 (835)
.-+..|.+|..++....+ +| ..+|-.+..+. +|..+.+|+|.-+.+-...-.=+.|+++.+.++ -+...|.
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~-~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s-~~~~~~~-- 254 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFR-NLKTLKFSALSTENIVDIELLKPTLQTICVHNT-TIQDVPS-- 254 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhh-hhheeeeeccchhheeceeecCchhheeeeecc-ccccccc--
Confidence 345566677666653211 11 12455555565 777777777644433222222245666666554 2332222
Q ss_pred hccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCC
Q 003265 562 ISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLA 641 (835)
Q Consensus 562 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 641 (835)
+--++++..+.... .....+....++...+.|.++++++|.+..+.+ +.++.+.++.|.++.+
T Consensus 255 l~pe~~~~D~~~~E--------------~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N 317 (490)
T KOG1259|consen 255 LLPETILADPSGSE--------------PSTSNGSALVSADTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQN 317 (490)
T ss_pred ccchhhhcCccCCC--------------CCccCCceEEecchHhhhhhccccccchhhhhh---hhhhccceeEEecccc
Confidence 21222222111110 011133344556667888899999887766554 3445678999999886
Q ss_pred CCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEee
Q 003265 642 GDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSL 721 (835)
Q Consensus 642 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L 721 (835)
... .+. .+..+++|..|++++|...+ ...|.. .+-|.+.|.|.++ .+++++-++++-+|..|++
T Consensus 318 ~i~-~v~---nLa~L~~L~~LDLS~N~Ls~--~~Gwh~---------KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 318 RIR-TVQ---NLAELPQLQLLDLSGNLLAE--CVGWHL---------KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDL 381 (490)
T ss_pred cee-eeh---hhhhcccceEeecccchhHh--hhhhHh---------hhcCEeeeehhhh-hHhhhhhhHhhhhheeccc
Confidence 433 333 57788999999999865433 344543 5889999999998 6888888999999999999
Q ss_pred ecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCC
Q 003265 722 YGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLP 761 (835)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 761 (835)
++| .++.+- ....++.+|+|+.|.|.++|
T Consensus 382 ~~N-~Ie~ld----------eV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 382 SSN-QIEELD----------EVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ccc-chhhHH----------HhcccccccHHHHHhhcCCC
Confidence 986 455542 22378899999999998876
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.63 E-value=1.1e-08 Score=102.25 Aligned_cols=248 Identities=19% Similarity=0.116 Sum_probs=117.9
Q ss_pred CCCCcceEEEeccCCcc----cccchhhcCCCcceEEEeecCCCCccccccCchHhhhh------hcccEEeeccccc--
Q 003265 463 PKCPHLLTLFLDFNQEL----KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELG------SSLQLFDISLTLI-- 530 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~------~~L~~L~L~~~~i-- 530 (835)
..+..++.|+|++|..- ......+.+.++|+..++|+---.....++|+.+..|. |+|++||||.|-+
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45566677777755432 22233356667777777776410002233454432222 2666666666622
Q ss_pred ---cccchhhcCCCCCcEEecccccccCCcchHH-------------hccCcccceeeecCcCccCcccCCCcccccCCc
Q 003265 531 ---KELPEELKKLVNLKCLNLRWAYRLNKIPRQL-------------ISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGG 594 (835)
Q Consensus 531 ---~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~-------------i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 594 (835)
..+-.-+.+++.|++|+|.+| .+.....+. +..-++|+.+...+|.....+ .
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g-----------a 174 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG-----------A 174 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc-----------H
Confidence 222233455666666666666 333222111 122344555555544433211 1
Q ss_pred ccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceeccccccccccc
Q 003265 595 EVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELK 674 (835)
Q Consensus 595 ~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~ 674 (835)
......++..+.|+.+.+..|++.. .........+..+++|+.|+|..|.....-
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~------------------------eG~~al~eal~~~~~LevLdl~DNtft~eg- 229 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRP------------------------EGVTALAEALEHCPHLEVLDLRDNTFTLEG- 229 (382)
T ss_pred HHHHHHHHhccccceEEEecccccC------------------------chhHHHHHHHHhCCcceeeecccchhhhHH-
Confidence 1122233344445544444333211 001111235666777777777765432210
Q ss_pred ccchhcccccCCcccCCCccEEeEecCCCCCCCc------hh-hccCCccEEeeecCccchhhcccCccCCCcccccCCC
Q 003265 675 IDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT------FL-VFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHIS 747 (835)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~------~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 747 (835)
-..++ .....+++|+.|++++| .+++=- .+ ...|+|+.|.+.+|....+-.. .+...+.
T Consensus 230 s~~La-----kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ 295 (382)
T KOG1909|consen 230 SVALA-----KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMA 295 (382)
T ss_pred HHHHH-----HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHh
Confidence 00010 01124677888888888 454311 11 2477888888887755433211 0111334
Q ss_pred CCCcccEeecCCCC
Q 003265 748 PFGNLQTLDLSRLP 761 (835)
Q Consensus 748 ~~~~L~~L~l~~~~ 761 (835)
.-|.|+.|+|.+|.
T Consensus 296 ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 296 EKPDLEKLNLNGNR 309 (382)
T ss_pred cchhhHHhcCCccc
Confidence 46777888777753
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.3e-09 Score=104.40 Aligned_cols=184 Identities=21% Similarity=0.137 Sum_probs=101.8
Q ss_pred hcccEEeecccccc--ccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcc
Q 003265 518 SSLQLFDISLTLIK--ELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGE 595 (835)
Q Consensus 518 ~~L~~L~L~~~~i~--~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 595 (835)
..|++||||++.|+ .+...++.+++|+.|.|.++.--..+-.. |.+=.+|+.|+++.|+-.. ..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------EN 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hh
Confidence 35888888887665 34444566667777777666322223333 5555666666666543221 00
Q ss_pred cchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccc-cccccceeccccccc-ccc
Q 003265 596 VLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFAD-LNHLNELGIDRAEEL-EEL 673 (835)
Q Consensus 596 ~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~l-~~l 673 (835)
..---+.+ ++.|..|+|+||......- ...+.+ -++|+.|+|+||... ..-
T Consensus 251 ~~~ll~~s--------------------------cs~L~~LNlsWc~l~~~~V-tv~V~hise~l~~LNlsG~rrnl~~s 303 (419)
T KOG2120|consen 251 ALQLLLSS--------------------------CSRLDELNLSWCFLFTEKV-TVAVAHISETLTQLNLSGYRRNLQKS 303 (419)
T ss_pred HHHHHHHh--------------------------hhhHhhcCchHhhccchhh-hHHHhhhchhhhhhhhhhhHhhhhhh
Confidence 00011222 3455556666654432221 011111 257888888886432 111
Q ss_pred cccchhcccccCCcccCCCccEEeEecCCCCCC--CchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCc
Q 003265 674 KIDYAEIVRKRREPFVFRSLHLVAIYECHKLKD--LTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGN 751 (835)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 751 (835)
...... ..+|+|.+|+|++|..++. +..+.+++.|++|.++.|..+.-- ..-.++..|+
T Consensus 304 h~~tL~--------~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~-----------~~~~l~s~ps 364 (419)
T KOG2120|consen 304 HLSTLV--------RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE-----------TLLELNSKPS 364 (419)
T ss_pred HHHHHH--------HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH-----------HeeeeccCcc
Confidence 222222 3578888888888877765 124668888888888888765321 1124567788
Q ss_pred ccEeecCCCC
Q 003265 752 LQTLDLSRLP 761 (835)
Q Consensus 752 L~~L~l~~~~ 761 (835)
|.+|++.+|-
T Consensus 365 l~yLdv~g~v 374 (419)
T KOG2120|consen 365 LVYLDVFGCV 374 (419)
T ss_pred eEEEEecccc
Confidence 8888888763
No 53
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.63 E-value=5.5e-07 Score=90.45 Aligned_cols=172 Identities=17% Similarity=0.169 Sum_probs=108.6
Q ss_pred cccchHHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLE---QVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
++||.+.-+. -|..++.++.+..+.+||++|+||||||+.+.... +.+- ..||..|....-..-.+.|.++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH
Confidence 4567665432 35556667889999999999999999999999876 2221 45676665543333333333332
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccC--CcccccccccCCCCCCCCCcEEEE--Eccchhh---hhccCC
Q 003265 173 GLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIW--ERVDLTKVGVPLPGPQNTTSKVVF--TTRFIDV---CGSMEA 245 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~s~Iiv--TtR~~~v---~~~~~~ 245 (835)
.. ...+.++|.+|++|+|. +..+-+.+ +| .-.+|..++| ||.+... +..+..
T Consensus 214 q~-----------------~~~l~krkTilFiDEiHRFNksQQD~f---LP-~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 214 QN-----------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LP-HVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred HH-----------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cc-eeccCceEEEecccCCCccchhHHHHhc
Confidence 11 12346789999999994 33333332 34 4456776666 7777653 344566
Q ss_pred CceEEeccCChHHHHHHHHHHhC---CCCc---CCCh----hHHHHHHHHHHHcCCcc
Q 003265 246 DRKFLVACLSEKDAWELFREKVG---EETL---KSDH----DIAELAQIVAKECVGLP 293 (835)
Q Consensus 246 ~~~~~l~~L~~~~~~~lf~~~~~---~~~~---~~~~----~~~~~~~~i~~~c~GlP 293 (835)
+.++.+++|+.++...++.+... .... ..+. -...+.+-++..|+|-.
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 78999999999999999988432 2111 1111 12345666777888864
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-09 Score=104.59 Aligned_cols=137 Identities=18% Similarity=0.139 Sum_probs=97.7
Q ss_pred ccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCC---CCC
Q 003265 631 SCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKL---KDL 707 (835)
Q Consensus 631 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l---~~l 707 (835)
.+|+.|+|+.|++.+.......+.+|+.|.+|+|++|.......-.... .--++|.+|+|+||..- .++
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~--------hise~l~~LNlsG~rrnl~~sh~ 305 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA--------HISETLTQLNLSGYRRNLQKSHL 305 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh--------hhchhhhhhhhhhhHhhhhhhHH
Confidence 4677777777777666554557888999999999999765533111111 12478999999999732 233
Q ss_pred ch-hhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCcccc-ccCCCCCCCCccEEEEecCC
Q 003265 708 TF-LVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKS-IYWKPLPFTHLKEMAVTHGC 785 (835)
Q Consensus 708 ~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~i~~~C 785 (835)
.. ...+|+|..|+|++|..++.-.. ..+..|+.|++|.++.|..+-- --......|+|..|++. +|
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~~~~-----------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~-g~ 373 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKNDCF-----------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF-GC 373 (419)
T ss_pred HHHHHhCCceeeeccccccccCchHH-----------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec-cc
Confidence 33 34799999999999988776322 3567899999999999976532 11245678999999998 77
Q ss_pred Cc
Q 003265 786 NQ 787 (835)
Q Consensus 786 ~~ 787 (835)
-.
T Consensus 374 vs 375 (419)
T KOG2120|consen 374 VS 375 (419)
T ss_pred cC
Confidence 43
No 55
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.61 E-value=6.4e-07 Score=86.03 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=95.3
Q ss_pred cccchHHHHHHHHHHhh-----cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLV-----EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
+|||.+.-++.+.-++. .+...-+.+||++|+||||||..+++.. ...|. +.+...-....++ ..++.
T Consensus 25 efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il~ 97 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAILT 97 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHHH
T ss_pred HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHHH
Confidence 79999988887654443 2456788999999999999999999998 44442 2222110011111 11111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--c-------ccccccc--CCCC---------CCCCCcEE
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--V-------DLTKVGV--PLPG---------PQNTTSKV 230 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~-------~~~~l~~--~l~~---------~~~~~s~I 230 (835)
. + +++-+|++|++... . ..++... .... .-.+-+-|
T Consensus 98 ~-----------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 98 N-----------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp T--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred h-----------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 1 1 23457777887431 1 0111111 0100 01123455
Q ss_pred EEEccchhhhhccCCC--ceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhc
Q 003265 231 VFTTRFIDVCGSMEAD--RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAY 305 (835)
Q Consensus 231 ivTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~ 305 (835)
=-|||..-+...+... -..+++..+.+|-.++..+.+..-.... -++.+.+|++.|.|-|--..-+-+.++.
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 6799986665555443 2457999999999999998775444222 2578999999999999776666555443
No 56
>PRK04195 replication factor C large subunit; Provisional
Probab=98.60 E-value=3.2e-06 Score=95.00 Aligned_cols=239 Identities=19% Similarity=0.201 Sum_probs=136.4
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++. .++ .+-++.++..... ....++..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~-~i~~~i~~ 87 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTAD-VIERVAGE 87 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHH-HHHHHHHH
Confidence 689999999999999864 226789999999999999999999987 133 3334444433222 22233222
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc------ccccccCCCCCCCCCcEEEEEccch-hhhh--c
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD------LTKVGVPLPGPQNTTSKVVFTTRFI-DVCG--S 242 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~~l~~~l~~~~~~~s~IivTtR~~-~v~~--~ 242 (835)
..... .....++-+||||+++.... ...+...+. ..+..||+|+.+. .... .
T Consensus 88 ~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 88 AATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred hhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhhH
Confidence 21100 01113678999999975321 333433332 2233456555432 2211 1
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcC---ccHHHHHhh--hC
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYR---KKAEQWRQF--AG 317 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~---~~~~~w~~~--~~ 317 (835)
-.....+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+... -+...-... ..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d 225 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRD 225 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCC
Confidence 123567899999999999998887755443333 3677889999999765554433333332 122222221 23
Q ss_pred CCcchhhHHHHHHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccC
Q 003265 318 LGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGE 371 (835)
Q Consensus 318 ~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~ 371 (835)
....++.++..-+..=..+.+...+... .++. ..+-.|+.+.+...
T Consensus 226 ~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 226 REESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 3445666666555421111233322211 1222 34677999998765
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=1.6e-08 Score=98.50 Aligned_cols=110 Identities=18% Similarity=0.112 Sum_probs=67.6
Q ss_pred CCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCccc
Q 003265 489 MPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRL 568 (835)
Q Consensus 489 l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 568 (835)
.+.|..||||+| .|+.+.+++.-++ .++.|++|+|.|..+-. +..|.+|++|||++| .+..+.-. -.+|-+.
T Consensus 283 Wq~LtelDLS~N----~I~~iDESvKL~P-kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gw-h~KLGNI 354 (490)
T KOG1259|consen 283 WQELTELDLSGN----LITQIDESVKLAP-KLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGW-HLKLGNI 354 (490)
T ss_pred Hhhhhhcccccc----chhhhhhhhhhcc-ceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhh-HhhhcCE
Confidence 355677777777 6767666665554 77777777777766643 666777777777776 44444332 3456666
Q ss_pred ceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHH
Q 003265 569 CVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQIL 623 (835)
Q Consensus 569 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l 623 (835)
+.|.+.+|.+. .+..|++|-+|..|++..|.+..++..
T Consensus 355 KtL~La~N~iE-----------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV 392 (490)
T KOG1259|consen 355 KTLKLAQNKIE-----------------TLSGLRKLYSLVNLDLSSNQIEELDEV 392 (490)
T ss_pred eeeehhhhhHh-----------------hhhhhHhhhhheeccccccchhhHHHh
Confidence 67777666544 244455566666666666665555443
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=7.7e-08 Score=106.21 Aligned_cols=179 Identities=24% Similarity=0.319 Sum_probs=112.1
Q ss_pred hcCCCcceEEEeecCCCCccccccCchHhhh-hhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhcc
Q 003265 486 FQFMPSLKVLKMSYCGQSWSSFQLPVGMSEL-GSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISN 564 (835)
Q Consensus 486 ~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l-~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 564 (835)
...++.+..|++.++ .+..+|..++.+ . +|++|++++|.+..+|..++.+++|+.|++++| .+..+|.. .+.
T Consensus 112 ~~~~~~l~~L~l~~n----~i~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNN----NITDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSN 184 (394)
T ss_pred hhcccceeEEecCCc----ccccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhh
Confidence 445577888888888 788887777766 4 788888888888888777888888888888888 67777774 447
Q ss_pred CcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCC
Q 003265 565 YSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDA 644 (835)
Q Consensus 565 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 644 (835)
+++|+.|+++++.+.. ....+..+.+|++|.+..+. ..
T Consensus 185 ~~~L~~L~ls~N~i~~----------------l~~~~~~~~~L~~l~~~~N~--------------------------~~ 222 (394)
T COG4886 185 LSNLNNLDLSGNKISD----------------LPPEIELLSALEELDLSNNS--------------------------II 222 (394)
T ss_pred hhhhhheeccCCcccc----------------CchhhhhhhhhhhhhhcCCc--------------------------ce
Confidence 7888888888776653 11111223334444444332 11
Q ss_pred CcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecC
Q 003265 645 TSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGC 724 (835)
Q Consensus 645 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~ 724 (835)
... ..+..+.++..|.+.++.... + +... ..+++|+.|+++++ .+.+++.++.+.+|+.|+++++
T Consensus 223 ~~~---~~~~~~~~l~~l~l~~n~~~~-~-~~~~---------~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 223 ELL---SSLSNLKNLSGLELSNNKLED-L-PESI---------GNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ecc---hhhhhcccccccccCCceeee-c-cchh---------ccccccceeccccc-cccccccccccCccCEEeccCc
Confidence 111 144445555555544332221 0 2222 24666777777777 5666666777777888888776
Q ss_pred ccch
Q 003265 725 NAME 728 (835)
Q Consensus 725 ~~l~ 728 (835)
....
T Consensus 288 ~~~~ 291 (394)
T COG4886 288 SLSN 291 (394)
T ss_pred cccc
Confidence 4443
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.57 E-value=1.1e-06 Score=94.81 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=109.9
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-eEEEEEecCccCHHHHHHHHH-----
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKLQEDIG----- 169 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~----- 169 (835)
.++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.. . ...+. ..+.+++++..+ .....+.
T Consensus 16 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l-~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~ 91 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL-Y-GDPWENNFTEFNVADFFD--QGKKYLVEDPRF 91 (337)
T ss_pred HhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-c-CcccccceEEechhhhhh--cchhhhhcCcch
Confidence 689999999999999887776778899999999999999999887 2 12222 234554433210 0000000
Q ss_pred -HHhCCCCCCCCCCCHHHHHHHHH-HH---h--cCCcEEEEEcccCCcc--cccccccCCCCCCCCCcEEEEEccch-hh
Q 003265 170 -KKIGLVGDSWKSRSAEEKALDIF-RS---L--RGKRIVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRFI-DV 239 (835)
Q Consensus 170 -~~l~~~~~~~~~~~~~~~~~~l~-~~---l--~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~IivTtR~~-~v 239 (835)
..++... ............+. .. . .+.+-+||+||+.... ....+...+. .....+++|+|+... .+
T Consensus 92 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 92 AHFLGTDK--RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhh--hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhhC
Confidence 0000000 00001111222221 11 1 2345589999995432 2233333332 233446777776542 22
Q ss_pred hhcc-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 240 CGSM-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 240 ~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
...+ +....+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+..
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2211 23457889999999999999887654442222 46778888899987655543
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.56 E-value=7.1e-07 Score=89.83 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=99.1
Q ss_pred ccc-chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVV-GLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~v-Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.|+ |-...+..+.....+.....+.|+|..|+|||+|++.+++.. . .....++|+++.+ ....+..
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~-~--~~~~~~~y~~~~~------~~~~~~~---- 86 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA-E--QAGRSSAYLPLQA------AAGRLRD---- 86 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEeHHH------hhhhHHH----
Confidence 454 444444444444334444579999999999999999999886 2 2223566775432 1111110
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc---cccc-ccccCCCCCCCCCcEEEEEccchh---------hhh
Q 003265 175 VGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER---VDLT-KVGVPLPGPQNTTSKVVFTTRFID---------VCG 241 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~-~l~~~l~~~~~~~s~IivTtR~~~---------v~~ 241 (835)
..+.+ .+.-+|||||+... ..|. .+...+......|..||+|++... +.+
T Consensus 87 ----------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 87 ----------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred ----------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 11111 23348999999532 1222 122222111234567999998532 233
Q ss_pred ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 242 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 242 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
.+.....+++++++.++-.+++.+++.......+ ++...-|++.++|-.-.+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 4445678999999999999999987754333233 366777888888765444
No 61
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.6e-06 Score=91.82 Aligned_cols=177 Identities=11% Similarity=0.167 Sum_probs=115.8
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcc---cCCCCCCeEEEEEe-cCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFL---ESPTNFDCVIWVVV-SKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~ 170 (835)
.++|.+..++.+...+..+.. +...++|+.|+||||+|+.++.... ....++|...|... +....+++ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 578999999999999987654 5678999999999999999998651 12346666555542 22223333 222333
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccC--CcccccccccCCCCCCCCCcEEEEEccchh-hhh-ccCCC
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIW--ERVDLTKVGVPLPGPQNTTSKVVFTTRFID-VCG-SMEAD 246 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~-~~~~~ 246 (835)
.+... -..+++-++|+|+++ +...+..+...+. ....++.+|++|.+.+ +.. ..+.+
T Consensus 84 ~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 84 EVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 22211 012455567777764 4556777877776 5667888888886543 211 12335
Q ss_pred ceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 247 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 247 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
..+.+.++++++....+.+.+.... .+.++.++..++|.|..+...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999988877653211 244677888999998765443
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.5e-06 Score=97.82 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=113.1
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.+||.+..++.|.+++..+.+ +.+.++|..|+||||+|+.+.+.+. -...++. ..+..-...+.|...-..
T Consensus 17 EVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~-------~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS-------QPCGVCRACREIDEGRFV 88 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC-------CCCcccHHHHHHhcCCCc
Confidence 689999999999999987664 4667999999999999999988762 1111110 000100111111100000
Q ss_pred ---CCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh-hh-hcc
Q 003265 175 ---VGDSWKSRSAEEKALDIFRS----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID-VC-GSM 243 (835)
Q Consensus 175 ---~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~-~~~ 243 (835)
..+.......++....+... ..++.-++|||++... ..+..+...+. ......++|+||.+.. +. ...
T Consensus 89 DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEEECChhhccchhh
Confidence 00000011112211111111 1345568999999754 33566655554 3445677777776643 32 222
Q ss_pred CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc-hHHHHHHHH
Q 003265 244 EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP-LALITIGRA 302 (835)
Q Consensus 244 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~~ 302 (835)
+-+..+.+.+++.++..+.+.+.+..+.+..+ .+..+.|++.++|.. -|+..+-..
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQA 224 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQA 224 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33578999999999999999988765543322 467788999998865 455554433
No 63
>PF13173 AAA_14: AAA domain
Probab=98.53 E-value=2.7e-07 Score=83.52 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
.+++.|.|+.|+||||++++++.+. . ....+++++..+.........+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~~~~~~~~-------------------~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRDRRLADPD-------------------LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHHHHHhhhh-------------------hHHHHHHhh
Confidence 3689999999999999999999987 2 4456778876664331111000 122233333
Q ss_pred cCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhhc------cCCCceEEeccCChHHH
Q 003265 196 RGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGS------MEADRKFLVACLSEKDA 259 (835)
Q Consensus 196 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~------~~~~~~~~l~~L~~~~~ 259 (835)
..++.+++||++....+|......+. +..+..+|++|+........ .+....++|.||+-+|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34778999999988778877766665 44467899999987665422 12234678999998773
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=7.3e-08 Score=106.38 Aligned_cols=122 Identities=28% Similarity=0.360 Sum_probs=91.3
Q ss_pred EEEeeeCCc-cccCCCCCCCcceEEEeccCCcccccchhhcCCC-cceEEEeecCCCCccccccCchHhhhhhcccEEee
Q 003265 448 RLSLMQNQI-ETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMP-SLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDI 525 (835)
Q Consensus 448 ~l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L 525 (835)
.+.+..+.+ .........+.+..|.+.++....+++. ...++ +|+.|++++| .+..+|..++.++ +|+.|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N----~i~~l~~~~~~l~-~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN----KIESLPSPLRNLP-NLKNLDL 170 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc----chhhhhhhhhccc-ccccccc
Confidence 345555554 3333345567788888886655566664 34453 8888888888 8888888888888 8888888
Q ss_pred ccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcC
Q 003265 526 SLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTG 577 (835)
Q Consensus 526 ~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 577 (835)
++|++..+|...+.+.+|+.|++++| .+..+|.. +..+..|++|.++++.
T Consensus 171 ~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 171 SFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNS 220 (394)
T ss_pred CCchhhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCc
Confidence 88888888888778888888888888 78888875 5677778888888774
No 65
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.5e-06 Score=99.72 Aligned_cols=179 Identities=18% Similarity=0.219 Sum_probs=110.7
Q ss_pred cccchHHHHHHHHHHhhcCCceE-EEEEcCCCCcHHHHHHHHHhhcccCCCC-------------------CCeEEEEEe
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGI-IGLYGMGGVGKTTLLTHINNKFLESPTN-------------------FDCVIWVVV 155 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~~ 155 (835)
.+||.+..+..|.+++..+.+.- +.++|+.|+||||+|+.+++... -... |.-++++..
T Consensus 17 dIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 68999999999999998876654 58999999999999999998872 1111 111122211
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE
Q 003265 156 SKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIF-RSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 232 (835)
Q Consensus 156 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv 232 (835)
+....+.. .++|.. .+. .-..+++-++|||++... ..+..++..+- ......++|+
T Consensus 96 as~~kVDd-IReLie-------------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFIL 154 (944)
T PRK14949 96 ASRTKVDD-TRELLD-------------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFLL 154 (944)
T ss_pred ccccCHHH-HHHHHH-------------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEEE
Confidence 11111111 112221 111 112467779999999643 44556555554 3344556665
Q ss_pred Eccc-hhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 233 TTRF-IDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 233 TtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+|.+ ..+... ...+..|++.+++.++....+.+.+........ .+....|++.++|.|-.+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5544 444321 233578999999999999999887654332222 367788999999988544433
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=9.5e-08 Score=73.62 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=39.1
Q ss_pred cccEEeeccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcC
Q 003265 519 SLQLFDISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTG 577 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 577 (835)
+|++|++++|+++.+|. .+..+++|++|++++| .+..+|++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 66777777777777753 4566777777777766 5666666656777777777776654
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=9.3e-07 Score=82.53 Aligned_cols=124 Identities=24% Similarity=0.156 Sum_probs=74.3
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC
Q 003265 98 VGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD 177 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 177 (835)
+|++..++.+...+.....+.+.|+|++|+|||++++.+++.. . ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788899999988877667889999999999999999999987 2 222346666655433222211111000
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc-----ccccccccCCCCC--CCCCcEEEEEccchh
Q 003265 178 SWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER-----VDLTKVGVPLPGP--QNTTSKVVFTTRFID 238 (835)
Q Consensus 178 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~l~~~l~~~--~~~~s~IivTtR~~~ 238 (835)
............++.++|+||++.. ..+..+...+... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223457789999999743 1222222222100 135778888888643
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.4e-06 Score=96.75 Aligned_cols=193 Identities=15% Similarity=0.153 Sum_probs=110.6
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCC--CCCCeEEEEEecCccCHHHHHHHHHHH-
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESP--TNFDCVIWVVVSKDLRLEKLQEDIGKK- 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~- 171 (835)
.+||.+..++.|.+.+..+.+. .+.++|+.|+||||+|+.+.+...... .... .. +..+..-...+.|...
T Consensus 17 dVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC----CCCCcccHHHHHHHcCC
Confidence 6899999999999999887654 568999999999999999988772100 0000 00 0000000111111100
Q ss_pred ----hCCCCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEE-EEccchhhh
Q 003265 172 ----IGLVGDSWKSRSAEEKALDIFRS----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVV-FTTRFIDVC 240 (835)
Q Consensus 172 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Ii-vTtR~~~v~ 240 (835)
+.... ......++..+.+... ..++.-++|||++... ..+..+...+. .....+++| +||....+.
T Consensus 92 hpDviEIdA--as~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 92 FVDYIEMDA--ASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCcceEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhh
Confidence 00000 0111122222211111 1356679999999643 44566666554 333445554 455545443
Q ss_pred hc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 241 GS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 241 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.. .+-+..+.+..++.++..+.+.+.+..+....+ .+..+.|++.++|.|.....+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 223578999999999999998887654432222 355678899999998654443
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.47 E-value=1.3e-06 Score=92.69 Aligned_cols=178 Identities=14% Similarity=0.115 Sum_probs=106.7
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-eEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.++.++.|..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-+..++..... ..+++++.+..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~ 90 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFAQ 90 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHHh
Confidence 6789999899888888777777788999999999999999998861 22232 22223333322222 12222222110
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhhh-ccCCCceEE
Q 003265 175 VGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVCG-SMEADRKFL 250 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~~-~~~~~~~~~ 250 (835)
... ..-.++.-+++||+++.. .....+...+. .....+++|+++... .+.. ..+....++
T Consensus 91 ~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 91 KKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred ccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhccc
Confidence 000 000245679999999653 22233333332 233456777766432 2211 112246789
Q ss_pred eccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchH
Q 003265 251 VACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLA 295 (835)
Q Consensus 251 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 295 (835)
+.++++++....+...+.......+ .+....|++.++|..-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 9999999999999888765443333 35678888999987633
No 70
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=2.6e-07 Score=92.78 Aligned_cols=91 Identities=20% Similarity=0.169 Sum_probs=63.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc--cCHHHHHHHHHHHhCCCCCCCCCCCHH------
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKLQEDIGKKIGLVGDSWKSRSAE------ 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~------ 185 (835)
.....++|+|++|+|||||++.+++.. .. .+|+.++|+.+... .++.++++.+...+-...- ......
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~ 89 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAE 89 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHH
Confidence 455689999999999999999999987 33 38999999997776 7899999999433322211 111111
Q ss_pred HHHHHHHHH-hcCCcEEEEEcccC
Q 003265 186 EKALDIFRS-LRGKRIVLLLDDIW 208 (835)
Q Consensus 186 ~~~~~l~~~-l~~k~~LlVlDdv~ 208 (835)
......... -.+++.++++|++.
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHH
Confidence 111222222 25799999999994
No 71
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.9e-06 Score=94.57 Aligned_cols=189 Identities=14% Similarity=0.136 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.+||.+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++... -....+. ..+..-...+.|...-..
T Consensus 16 dVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~~-------~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVTS-------TPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCCC-------CCCccCHHHHHHhcCCCC
Confidence 679999999999999987654 5779999999999999999988761 1111100 000000111111100000
Q ss_pred C---CCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhh-hc
Q 003265 175 V---GDSWKSRSAEEKALDIFRS-----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVC-GS 242 (835)
Q Consensus 175 ~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~-~~ 242 (835)
. -+.......++.. .+... ..++.-++|+|++... .....+...+. ....+.++|++|.+. .+. ..
T Consensus 88 DviEIDAAs~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd~~kIp~TI 165 (702)
T PRK14960 88 DLIEIDAASRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTDPQKLPITV 165 (702)
T ss_pred ceEEecccccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECChHhhhHHH
Confidence 0 0000011111111 11111 2356679999999643 34555555554 334456777766553 232 22
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALI 297 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 297 (835)
.+.+..+++.+++.++..+.+.+.+.......+ .+....|++.++|.+-.+.
T Consensus 166 lSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 166 ISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 244578999999999999999887765443222 3567888999999774443
No 72
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=6.2e-06 Score=89.01 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=107.8
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.++.... -...... .++..-....++......
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~~-------~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGITS-------NPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCCCHHHHHHhcCCCC
Confidence 689999999999998887654 4678999999999999999998761 1111100 000000001111110000
Q ss_pred CC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCcc--cccccccCCCCCCCCCcEEEEEccc-hhhhhc-
Q 003265 175 VG---DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRF-IDVCGS- 242 (835)
Q Consensus 175 ~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~~- 242 (835)
.- +.......++ ...+.+.+ .+++-++|+|++.... .+..+...+. ......++|++|.+ ..+...
T Consensus 89 d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 89 DLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred ceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhHHH
Confidence 00 0000011111 12222222 2455699999996543 3555555554 34455666766654 333222
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.+-...+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.|-.+..
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 223468999999999999988886654332222 35677889999998854433
No 73
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.43 E-value=5.5e-06 Score=88.61 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=106.1
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEe--cCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV--SKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~ 173 (835)
.++|+++.++.+..++.....+.+.|+|++|+||||+|+.+++... ...+. ..++.+ +.......+ .+.+.++.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~-~~~i~~~~ 93 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVI-RNKIKEFA 93 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHH-HHHHHHHH
Confidence 5899999999999999877777789999999999999999999862 12222 122222 222121111 11111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhhh-ccCCCceE
Q 003265 174 LVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVCG-SMEADRKF 249 (835)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~~-~~~~~~~~ 249 (835)
... ..-...+-++++|++... .....+...+. .....+++|+++... .+.. .......+
T Consensus 94 ~~~----------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 94 RTA----------------PVGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred hcC----------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 000 000123568999998543 22333433333 233446677666432 2211 11223468
Q ss_pred EeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 250 LVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 250 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.+.+++.++....+.+.+.......+ .+....+++.++|.+--+..
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999887765443222 35677888999998765433
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.7e-06 Score=92.82 Aligned_cols=190 Identities=19% Similarity=0.146 Sum_probs=111.1
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..++.|..++..+... .+.++|++|+||||+|+.+++.. .-.+.+...+|.|.+... +.......+..+..
T Consensus 15 dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~ 92 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEIDA 92 (504)
T ss_pred HhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEecc
Confidence 6799999999999998876654 56999999999999999999887 221222223333321100 00000000000000
Q ss_pred CCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc-cchhhhhcc-CC
Q 003265 175 VGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RFIDVCGSM-EA 245 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt-R~~~v~~~~-~~ 245 (835)
. .....+. +..+.+.+ .+++-++|||+++.. ..+..+...+. .....+.+|++| +...+...+ +.
T Consensus 93 ~----~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 93 A----SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred c----ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhcc
Confidence 0 0111111 12222222 345669999999743 34555655554 333444555544 434442222 33
Q ss_pred CceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 246 DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 246 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
...+++.+++.++..+.+.+.+.......+ .+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 568999999999999999987754442222 367788999999988544
No 75
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=7e-07 Score=87.05 Aligned_cols=45 Identities=29% Similarity=0.426 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHhh---cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLV---EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.||||+++++++...+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999993 2456899999999999999999999988
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.1e-06 Score=91.12 Aligned_cols=185 Identities=20% Similarity=0.232 Sum_probs=108.1
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCeEEEEEec
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPT------------------NFDCVIWVVVS 156 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~s 156 (835)
.+||.+..+..|...+..+.. +.+.++|++|+||||+|+.+++....... .+..++.+..+
T Consensus 15 divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa 94 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA 94 (472)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc
Confidence 689999988888888877766 46889999999999999999887621100 01112222222
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-E
Q 003265 157 KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-T 233 (835)
Q Consensus 157 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-T 233 (835)
....+..+ ++|...... .-..+++-++|+|++... .....+...+. .......+|+ |
T Consensus 95 ~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Ilat 154 (472)
T PRK14962 95 SNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVLAT 154 (472)
T ss_pred ccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEEEe
Confidence 11112111 112111110 012345679999999542 33444544443 2223344444 4
Q ss_pred ccchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCC-cchHHHHHHHHH
Q 003265 234 TRFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVG-LPLALITIGRAM 303 (835)
Q Consensus 234 tR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~~~~l 303 (835)
+....+... ......+.+.+++.++....+.+.+.......+ .+....|++.++| .+.|+..+-.+.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433334322 233568899999999999999887754332222 3566778887765 567777765543
No 77
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=5.6e-06 Score=91.75 Aligned_cols=192 Identities=17% Similarity=0.162 Sum_probs=110.1
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCe-EEEEEecCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
.++|.+..+..+...+..+.. +.+.++|+.|+||||+|+.+++... -...... .-+..+... .....+.....
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C----~~C~~i~~~~h 96 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQC----TNCISFNNHNH 96 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCC----hHHHHHhcCCC
Confidence 579999999999887777654 5788999999999999999998862 1111000 000000000 00111110000
Q ss_pred CC---CCCCCCCCHHHHHHHHHH----HhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchhhhhcc
Q 003265 174 LV---GDSWKSRSAEEKALDIFR----SLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCGSM 243 (835)
Q Consensus 174 ~~---~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~~~ 243 (835)
.. -+.......++....+.. -..+++-++|+|+++.. ..+..+...+. .....+.+|+ ||+...+...+
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHHH
Confidence 00 000011112222221111 12456779999999753 44666666665 3444555554 55555554322
Q ss_pred -CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 244 -EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 244 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
+....+++.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 33567999999999999999988865442222 356677889999977443
No 78
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.39 E-value=2.7e-06 Score=85.73 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=101.1
Q ss_pred ccchHH-HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 003265 97 VVGLQS-QLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 97 ~vGr~~-~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 175 (835)
++|... .+..+.++......+.+.|+|+.|+|||+|++.+++.. . ..-..+.++.+..... .
T Consensus 25 ~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~~v~y~~~~~~~~---~----------- 87 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL-S--QRGRAVGYVPLDKRAW---F----------- 87 (235)
T ss_pred ccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCeEEEEEHHHHhh---h-----------
Confidence 346333 34444444444555789999999999999999999886 2 2223456666543110 0
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc---ccccc-cccCCCCCCCCC-cEEEEEccch---------hhhh
Q 003265 176 GDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER---VDLTK-VGVPLPGPQNTT-SKVVFTTRFI---------DVCG 241 (835)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~~~~~-s~IivTtR~~---------~v~~ 241 (835)
..+. .+.+.. --+|+|||+... ..|+. +...+......| .++|+||+.. .+.+
T Consensus 88 --------~~~~----~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 88 --------VPEV----LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred --------hHHH----HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 0011 111111 238999999532 23332 111121011123 4788988754 2344
Q ss_pred ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 242 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 242 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
.+.....++++++++++-.+++.+++.......+ +++..-|++.+.|..-++..+-
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHH
Confidence 5566678999999999999999886654433333 4677788888888765555443
No 79
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=7.8e-07 Score=81.16 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLES--PTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++..... ..+.......+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLID 81 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHHH
Confidence 4689999999999999999999876110 00134577999988889999999999999876532 3567777788888
Q ss_pred HhcCCc-EEEEEcccCCc---ccccccccCCCCCCCCCcEEEEEccc
Q 003265 194 SLRGKR-IVLLLDDIWER---VDLTKVGVPLPGPQNTTSKVVFTTRF 236 (835)
Q Consensus 194 ~l~~k~-~LlVlDdv~~~---~~~~~l~~~l~~~~~~~s~IivTtR~ 236 (835)
.+...+ .+||+||+... ..++.+.... ...+.+||+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~---~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLL---NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHT---CSCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHH---hCCCCeEEEEECh
Confidence 886554 59999999543 2233332222 2556677776654
No 80
>PTZ00202 tuzin; Provisional
Probab=98.37 E-value=6.7e-06 Score=86.27 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=99.3
Q ss_pred CcccchHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 95 RKVVGLQSQLEQVWTCLVE---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
..|+||+.+..++...|.+ +..+++.|.|++|+|||||++.+.... . + ...+++.. +..++++.|+.+
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~LL~A 332 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRSVVKA 332 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHHHHHH
Confidence 3899999999999998864 234689999999999999999999765 1 1 12333332 679999999999
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh-----c-CCcEEEEEcccCCcccccccc---cCCCCCCCCCcEEEEEccchhhhhc
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSL-----R-GKRIVLLLDDIWERVDLTKVG---VPLPGPQNTTSKVVFTTRFIDVCGS 242 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~~~~l~---~~l~~~~~~~s~IivTtR~~~v~~~ 242 (835)
++.+. .....++...|.+.+ . +++.+||+-= .+-.++..+. ..+. ....-|.|++----+.+.-.
T Consensus 333 LGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la-~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 333 LGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALA-CDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred cCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHH-ccchhheeeeeehHhhcchh
Confidence 99743 222334444444433 2 5666666642 1212221110 1111 23344667665444333211
Q ss_pred ---cCCCceEEeccCChHHHHHHHHHHh
Q 003265 243 ---MEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 243 ---~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
..--..|.+++++.++|.++-.+..
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1123578899999999999877654
No 81
>PRK09087 hypothetical protein; Validated
Probab=98.37 E-value=3.8e-06 Score=83.72 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=89.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
..+.+.|+|+.|+|||+|++.++... . ..+++.. .+...++..+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~~~---------------------- 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAANAA---------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHHhh----------------------
Confidence 44679999999999999999988764 1 1234221 1111111111
Q ss_pred hcCCcEEEEEcccCCcc-cccccccCCCCCCCCCcEEEEEccc---------hhhhhccCCCceEEeccCChHHHHHHHH
Q 003265 195 LRGKRIVLLLDDIWERV-DLTKVGVPLPGPQNTTSKVVFTTRF---------IDVCGSMEADRKFLVACLSEKDAWELFR 264 (835)
Q Consensus 195 l~~k~~LlVlDdv~~~~-~~~~l~~~l~~~~~~~s~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 264 (835)
.+ -+|++||+.... +-.++...+......|..||+|++. +.+.+.+.....+++++++.++-.+++.
T Consensus 87 -~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 87 -AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 11 278889995321 1122222221112346678888874 2344555667889999999999999999
Q ss_pred HHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 265 EKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
+.+.......+ +++..-|++.+.|..-++..+-
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 98865443333 4677788888888776666543
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=5.2e-06 Score=90.00 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.+||.+..+..|..++..+... .+.++|+.|+||||+|+.+++... -...... ..+.....-..+...+...+..
T Consensus 19 dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln-ce~~~~~---~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN-CENPIGN---EPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred HHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC-cccccCc---cccCCCcHHHHHHccCCcccee
Confidence 6799999999999999887754 589999999999999999999872 1111010 0011111111111110000000
Q ss_pred CCCCCCCCCH---HHHHHHHHH-HhcCCcEEEEEcccCC--cccccccccCCCCCCCCCcEEE-EEccchhhhhc-cCCC
Q 003265 175 VGDSWKSRSA---EEKALDIFR-SLRGKRIVLLLDDIWE--RVDLTKVGVPLPGPQNTTSKVV-FTTRFIDVCGS-MEAD 246 (835)
Q Consensus 175 ~~~~~~~~~~---~~~~~~l~~-~l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~s~Ii-vTtR~~~v~~~-~~~~ 246 (835)
-+....... .++...+.. ...++.-++|+|++.. ...+..+...+. .......+| .||....+... ..-+
T Consensus 95 -Idaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 95 -IDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred -echhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHHHhhh
Confidence 000001111 112222221 1245667999999964 345666655554 333344444 45554444322 2335
Q ss_pred ceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchH
Q 003265 247 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLA 295 (835)
Q Consensus 247 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 295 (835)
..|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+--
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRD 218 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHH
Confidence 78999999999999999887654442222 46778899999998743
No 83
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=1.4e-05 Score=85.34 Aligned_cols=196 Identities=13% Similarity=0.043 Sum_probs=111.3
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCe-EEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESP-TNFDC-VIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.++|.++.++.+.+.+..+.++ .+.++|+.|+||+|+|..++....... ...+. ..-...-.....-...+.|...-
T Consensus 20 ~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~ 99 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGA 99 (365)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccC
Confidence 6899999999999999887654 588999999999999999888762111 00000 00000000000001111111110
Q ss_pred C-------CCC-CC----CCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEE
Q 003265 173 G-------LVG-DS----WKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFT 233 (835)
Q Consensus 173 ~-------~~~-~~----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivT 233 (835)
. ... +. ......++ ++.+.+.+ .+.+-++|+||+... .....+...+. ....++.+|++
T Consensus 100 HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~IL~ 177 (365)
T PRK07471 100 HGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLFLLV 177 (365)
T ss_pred CCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEEEEE
Confidence 0 000 00 01112222 34444444 256779999999643 34445554454 33445666666
Q ss_pred ccch-hhhh-ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 234 TRFI-DVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 234 tR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
|.+. .+.. ..+.+..+.+.+++.++..+++.+...... .+....+++.++|.|.....+.
T Consensus 178 t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 178 SHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 6554 3322 223467899999999999999988653211 1222678899999998765553
No 84
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=7.1e-06 Score=87.12 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=112.6
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCeEEEEEecCccCHHHHHHHHHHH--
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSKDLRLEKLQEDIGKK-- 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~-- 171 (835)
.++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..++....... ..+... .....+......+.|...
T Consensus 24 ~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~h 100 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAH 100 (351)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCC
Confidence 679999999999999987764 4688999999999999999998872110 001111 001111111233333322
Q ss_pred -----hCCCCCC-----CCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcE-EEEE
Q 003265 172 -----IGLVGDS-----WKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSK-VVFT 233 (835)
Q Consensus 172 -----l~~~~~~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~-IivT 233 (835)
+..+.+. ......++ +..+.+++ .+++-++|+|++... .....+...+. ....... |++|
T Consensus 101 Pdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE-Epp~~~~fiLit 178 (351)
T PRK09112 101 PNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE-EPPARALFILIS 178 (351)
T ss_pred CCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh-cCCCCceEEEEE
Confidence 1111000 01112232 33444444 346679999999643 33444444443 2233344 4555
Q ss_pred ccchhhhhcc-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 234 TRFIDVCGSM-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 234 tR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
++...+.... +.+..+++.+++.++..+++.+...... -..+....|++.++|.|.....+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5543332222 2356899999999999999987432111 113456788999999998765544
No 85
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.34 E-value=1.3e-05 Score=91.93 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=117.0
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC---CeEEEEEecCc---cCHHHHHHHH-
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF---DCVIWVVVSKD---LRLEKLQEDI- 168 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~~i- 168 (835)
.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred hceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHhc
Confidence 689999999998888876666789999999999999999998765 222222 12344444321 1222221111
Q ss_pred --------------HHHhCCCC----------------CCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--cccccc
Q 003265 169 --------------GKKIGLVG----------------DSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKV 216 (835)
Q Consensus 169 --------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l 216 (835)
+...+... ++.... ....+..+.+.++++++.++-|+.|.. ..|..+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11111100 001111 233466778888888888887766543 456666
Q ss_pred ccCCCCCCCCCcEEEE--Eccchh-hhhcc-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 217 GVPLPGPQNTTSKVVF--TTRFID-VCGSM-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 217 ~~~l~~~~~~~s~Iiv--TtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
...+. ...+...|++ ||++.. +...+ .....+.+.+++.++.+.++.+.+.......+ .++.+.|.+.+..-
T Consensus 313 k~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~g 388 (615)
T TIGR02903 313 KKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIEG 388 (615)
T ss_pred hhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCcH
Confidence 65555 3444444554 566433 21111 12346788999999999999987754332222 34555565555444
Q ss_pred chHHHHHHHH
Q 003265 293 PLALITIGRA 302 (835)
Q Consensus 293 Plai~~~~~~ 302 (835)
+-|+..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 5566555433
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1e-05 Score=90.33 Aligned_cols=182 Identities=19% Similarity=0.194 Sum_probs=110.4
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCeEEEEEec
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESP------------------TNFDCVIWVVVS 156 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~s 156 (835)
.++|.+..+..+...+..+.. +.+.++|+.|+||||+|+.+++...... +.|...+++...
T Consensus 17 diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa 96 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA 96 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc
Confidence 679999999999999987654 4578999999999999999998651100 012222233221
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEE-E
Q 003265 157 KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVV-F 232 (835)
Q Consensus 157 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Ii-v 232 (835)
....+.+ ...+...+.. -..+++-++|+|++... .....+...+. .....+.+| +
T Consensus 97 s~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL~ 155 (546)
T PRK14957 97 SRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFILA 155 (546)
T ss_pred cccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEEE
Confidence 1111111 1112222211 12356679999999643 34555655554 333455555 5
Q ss_pred Eccchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc-hHHHHHHH
Q 003265 233 TTRFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP-LALITIGR 301 (835)
Q Consensus 233 TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~ 301 (835)
||....+... .+.+..+++.+++.++....+.+.+.......+ .+....|++.++|.+ .|+..+-.
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5554444322 334678999999999998888876644332222 356678899999966 45555443
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=5.9e-06 Score=95.66 Aligned_cols=165 Identities=21% Similarity=0.267 Sum_probs=98.4
Q ss_pred cccchHHHHH---HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLE---QVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.++|++..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .++.+. ..+.+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH---------
Confidence 6899988774 46666777777788999999999999999999876 34442 111110 00111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccCC--cccccccccCCCCCCCCCcEEEE--Eccchh--hhh-cc
Q 003265 173 GLVGDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIWE--RVDLTKVGVPLPGPQNTTSKVVF--TTRFID--VCG-SM 243 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~s~Iiv--TtR~~~--v~~-~~ 243 (835)
.........+.+ .+++.++||||++. ....+.+...+. .|+.+++ ||.+.. +.. ..
T Consensus 93 -----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 -----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhHhh
Confidence 111111222222 24678999999964 333444443332 3455555 344321 211 11
Q ss_pred CCCceEEeccCChHHHHHHHHHHhC-------CCCcCCChhHHHHHHHHHHHcCCcch
Q 003265 244 EADRKFLVACLSEKDAWELFREKVG-------EETLKSDHDIAELAQIVAKECVGLPL 294 (835)
Q Consensus 244 ~~~~~~~l~~L~~~~~~~lf~~~~~-------~~~~~~~~~~~~~~~~i~~~c~GlPl 294 (835)
+....+.+++++.++...++.+.+. ......+ .+....|++.+.|.--
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHH
Confidence 2246799999999999999988764 1111122 4566788888888743
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1e-05 Score=88.81 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=110.1
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCeEEEEEec
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESP------------------TNFDCVIWVVVS 156 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~s 156 (835)
++||.+..++.+.+.+..+... .+.++|+.|+||||+|+.++....... +.+..++.+..+
T Consensus 14 dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaa 93 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAA 93 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecc
Confidence 6899999999998888877665 789999999999999999987541000 111223333333
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc
Q 003265 157 KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT 234 (835)
Q Consensus 157 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt 234 (835)
....+.++ ++++..... .-..++.-++|+|++... .....+...+. .....+++|++|
T Consensus 94 s~~~vddI-R~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIlat 153 (491)
T PRK14964 94 SNTSVDDI-KVILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILAT 153 (491)
T ss_pred cCCCHHHH-HHHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEEe
Confidence 22222221 112211110 001345668999999543 34555555554 344556666555
Q ss_pred -cchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 235 -RFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 235 -R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
....+... .+....+.+.+++.++....+.+.+.......+ .+..+.|++.++|.+-.+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 43444322 234578999999999999999988765543222 356778999999987543
No 89
>PRK05642 DNA replication initiation factor; Validated
Probab=98.32 E-value=5.1e-06 Score=83.61 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
...+.|+|..|+|||+|++.+++.. . ..-..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~--~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-E--QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-H--hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 3678999999999999999999876 2 2223467776532 1111 01122223
Q ss_pred cCCcEEEEEcccCCc---ccccc-cccCCCCCCCCCcEEEEEccchh---------hhhccCCCceEEeccCChHHHHHH
Q 003265 196 RGKRIVLLLDDIWER---VDLTK-VGVPLPGPQNTTSKVVFTTRFID---------VCGSMEADRKFLVACLSEKDAWEL 262 (835)
Q Consensus 196 ~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~~~~~s~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 262 (835)
++-. +||+||+... ..|.. +...+......|..||+|++... +.+.+.....++++++++++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6889999532 23332 33323211234567888887532 223334456789999999999999
Q ss_pred HHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHH
Q 003265 263 FREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRA 302 (835)
Q Consensus 263 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 302 (835)
+.+++.......+ +++..-|++.+.|..-.+..+-..
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9866644332222 477788888888876655554433
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.5e-05 Score=85.97 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=104.3
Q ss_pred cccchHHHHHHHHHHhhcCC----------ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEES----------AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQ 165 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 165 (835)
.++|.+..++.|.+.+..+. .+.+.++|+.|+|||++|+.++......... +-++... ..-
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~~Cg~C----~~C 76 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EPGCGEC----RAC 76 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCCC----HHH
Confidence 57899999999999987653 4568899999999999999998865111000 0000000 000
Q ss_pred HHHHHHhCC----CCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc
Q 003265 166 EDIGKKIGL----VGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT 234 (835)
Q Consensus 166 ~~i~~~l~~----~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt 234 (835)
+.+...-.. -..+......++ ++.+.+.. .+++-++|+|++... .....+...+. ....+..+|++|
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE-ep~~~~~fIL~a 154 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE-EPPPRTVWLLCA 154 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh-cCCCCCeEEEEE
Confidence 011000000 000000111122 12222222 245568899999653 23344444443 334455555555
Q ss_pred cc-hhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 235 RF-IDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 235 R~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.+ ..+... .+-+..+.+.+++.++..+.+.+..+. + .+.+..+++.++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 54 444322 233578999999999999988754321 1 255778899999999765544
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=2.2e-05 Score=85.28 Aligned_cols=181 Identities=13% Similarity=0.176 Sum_probs=108.8
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCeEEEEEe
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESP-------------------TNFDCVIWVVV 155 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~ 155 (835)
.++|.++.++.+.+.+..+.. +.+.++|++|+||||+|+.++....... .+++. +++..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~~ 93 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEIDA 93 (355)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEeec
Confidence 679999999999999987654 4678999999999999999988762110 02221 22222
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEE
Q 003265 156 SKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFT 233 (835)
Q Consensus 156 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivT 233 (835)
....... -.+++...+... -..+++-++|+|++... .....+...+. .....+.+|++
T Consensus 94 ~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl~ 153 (355)
T TIGR02397 94 ASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFILA 153 (355)
T ss_pred cccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEEE
Confidence 1111111 111222211100 01245558999998543 33445544553 33445666666
Q ss_pred ccchh-hhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 234 TRFID-VCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 234 tR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
|.+.. +... .+....+++.++++++..+.+...+.......+ .+.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 64433 2221 223467889999999999999887654432222 3677888999999986655543
No 92
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.4e-05 Score=90.33 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=109.4
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
.+||.+..+..|.+++..+.. ..+.++|+.|+||||+|+.++....... ........ ..++.-..-+.|...-.
T Consensus 17 dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGRF 92 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCCC
Confidence 689999999999999988765 5678999999999999999987761100 00000000 01111111111111000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc-cchhhh-h
Q 003265 174 LV---GDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RFIDVC-G 241 (835)
Q Consensus 174 ~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt-R~~~v~-~ 241 (835)
.. -+.......++.. .+.+.. .++.-++|||++... ..+..+...+. ......++|++| ....+. .
T Consensus 93 ~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil~T 170 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVPVT 170 (618)
T ss_pred CceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhhHH
Confidence 00 0000111122221 122221 244558999999743 44555665554 333455565544 433332 2
Q ss_pred ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 242 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 242 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
..+-+..+++.+++.++..+.+.+.+.......+ .+....|++.++|.+-.+..
T Consensus 171 IlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 171 VLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2334678999999999999999887755443222 35678888899997754443
No 93
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.29 E-value=6.6e-06 Score=81.72 Aligned_cols=181 Identities=16% Similarity=0.133 Sum_probs=102.6
Q ss_pred cch-HHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 98 VGL-QSQLEQVWTCLVEE---SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 98 vGr-~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
+|. .+..-...+.+.++ ....+.|+|..|+|||+|++++++... ....-..+++++ ..++...+...+.
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~-~~~~~~~v~y~~------~~~f~~~~~~~~~ 84 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQ-KQHPGKRVVYLS------AEEFIREFADALR 84 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHH-HHCTTS-EEEEE------HHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHH-hccccccceeec------HHHHHHHHHHHHH
Confidence 564 23333344444332 345789999999999999999999872 111222455663 3455555655553
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc---ccccc-cccCCCCCCCCCcEEEEEccchh---------hh
Q 003265 174 LVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER---VDLTK-VGVPLPGPQNTTSKVVFTTRFID---------VC 240 (835)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~-l~~~l~~~~~~~s~IivTtR~~~---------v~ 240 (835)
.. . ...+...++ .-=+|+|||+... ..|.+ +...+......|.+||+|++... +.
T Consensus 85 ~~-------~----~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~ 152 (219)
T PF00308_consen 85 DG-------E----IEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLR 152 (219)
T ss_dssp TT-------S----HHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHH
T ss_pred cc-------c----chhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhh
Confidence 21 1 223334444 3348899999643 12222 21112111234668999996532 33
Q ss_pred hccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 241 GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 241 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
+.+...-.+++++.++++..+++.+.+......-+ +++++-|++.+.+..-.+..+-
T Consensus 153 SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 153 SRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHHH
Confidence 44455678999999999999999998865553333 4677778888877665555443
No 94
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=1.6e-06 Score=90.60 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=65.9
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc--CHHHHHHHHHHHhCCCCCCCCCCC
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKLQEDIGKKIGLVGDSWKSRS 183 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 183 (835)
+++.+.. +.-....|+|++|+||||||+++|+.. .. .+|+.++||.+.+.. ++.+++++|...+-... .+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I-~~-nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI-TT-NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHH-Hh-hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCH
Confidence 4444443 445678899999999999999999998 33 389999999998887 78888888874332221 11111
Q ss_pred HH------HHHHHHHHH-hcCCcEEEEEcccC
Q 003265 184 AE------EKALDIFRS-LRGKRIVLLLDDIW 208 (835)
Q Consensus 184 ~~------~~~~~l~~~-l~~k~~LlVlDdv~ 208 (835)
.. ...+..... -.+++++|++|++.
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11 111111122 26799999999994
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=7.1e-06 Score=92.42 Aligned_cols=175 Identities=14% Similarity=0.167 Sum_probs=106.7
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCC-------------------CCeEEEEEe
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTN-------------------FDCVIWVVV 155 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~~ 155 (835)
.+||.+..+..|.+++..+.. +.+.++|+.|+||||+|+.++.... -... |..++.+..
T Consensus 17 dIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 679999999999999988764 4689999999999999999988751 1111 101112211
Q ss_pred cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH----HhcCCcEEEEEcccCCcc--cccccccCCCCCCCCCcE
Q 003265 156 SKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR----SLRGKRIVLLLDDIWERV--DLTKVGVPLPGPQNTTSK 229 (835)
Q Consensus 156 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~ 229 (835)
+.. ...+.....+.. -..+++-++|||++.... ....+...+. .....++
T Consensus 96 As~-----------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~ 151 (709)
T PRK08691 96 ASN-----------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVK 151 (709)
T ss_pred ccc-----------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcE
Confidence 111 111111111111 123566799999996432 2334444443 2334556
Q ss_pred EEEEccch-hhhh-ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 230 VVFTTRFI-DVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 230 IivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
+|++|.+. .+.. ..+.+..+.+.+++.++....+.+.+.......+ .+..+.|++.++|.+.-+..
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHH
Confidence 66666443 2221 1123467889999999999999887765443222 35678899999998854443
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.1e-05 Score=90.27 Aligned_cols=180 Identities=16% Similarity=0.168 Sum_probs=108.5
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCeEEEEEec
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESP------------------TNFDCVIWVVVS 156 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~s 156 (835)
.+||.+..++.|.+++..+..+ .+.++|+.|+||||+|+.++....... +.|.-++.+..+
T Consensus 17 divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa 96 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA 96 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc
Confidence 6899999999999999887655 578999999999999999988762100 111122333322
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc
Q 003265 157 KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT 234 (835)
Q Consensus 157 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt 234 (835)
....++++ ++++..+.. .-..++.-++|+|++... .....+...+. .....+++|++|
T Consensus 97 s~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIlat 156 (509)
T PRK14958 97 SRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFILAT 156 (509)
T ss_pred ccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEEEE
Confidence 22222221 122222111 011356668999999643 34555555554 334456666554
Q ss_pred c-chhhhh-ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 235 R-FIDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 235 R-~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
. ...+.. ..+.+..+++.+++.++....+.+.+.......+ .+....|++.++|.+..+..
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 3 333322 1233567899999999988887776654442222 34567788889998754433
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.26 E-value=7.3e-06 Score=82.65 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=99.0
Q ss_pred ccc-chHHHH-HHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVV-GLQSQL-EQVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~v-Gr~~~~-~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.|+ |..... ..+.++... ...+.+.|+|..|+|||+||+.+++... ... ....+++...... .+
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~-~~~~~i~~~~~~~------~~---- 85 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGG-RNARYLDAASPLL------AF---- 85 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEehHHhHH------HH----
Confidence 344 554444 333343332 3456789999999999999999998761 122 2345554433210 00
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc--ccccccCCCCCCCCCc-EEEEEccchhhh--------h
Q 003265 173 GLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD--LTKVGVPLPGPQNTTS-KVVFTTRFIDVC--------G 241 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~~~s-~IivTtR~~~v~--------~ 241 (835)
... ...-+||+||+..... -..+...+......+. .||+|++..... +
T Consensus 86 --------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 011 2334799999954321 1222222221112333 466776653321 1
Q ss_pred ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHh
Q 003265 242 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMA 304 (835)
Q Consensus 242 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 304 (835)
.+.....+.+.++++++-..++.+.+.......+ ++..+.+++.+.|++..+..+-..+.
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 2233468899999999887877765433332222 46777888899999998887766553
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.26 E-value=2.3e-05 Score=76.33 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=93.4
Q ss_pred HHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCC-------------------CCCCeEEEEEec-CccCHHHH
Q 003265 106 QVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESP-------------------TNFDCVIWVVVS-KDLRLEKL 164 (835)
Q Consensus 106 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s-~~~~~~~~ 164 (835)
.+.+.+..+.. ..+.++|+.|+||||+|+.+........ .+.|. .++... ..... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 45566666655 5789999999999999999988862110 11121 122111 11111 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhhh
Q 003265 165 QEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVCG 241 (835)
Q Consensus 165 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~~ 241 (835)
.+++.+.+... -..+.+-++|+||+... ...+.+...+. .....+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChH
Confidence 11122221110 01245668999998643 33555555554 344456666666543 3322
Q ss_pred cc-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchH
Q 003265 242 SM-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLA 295 (835)
Q Consensus 242 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 295 (835)
.+ +....+.+.+++.++..+.+.+. + .+ .+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-----IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-----CC---HHHHHHHHHHcCCCccc
Confidence 11 23468999999999999998876 2 11 36688999999998853
No 99
>PF14516 AAA_35: AAA-like domain
Probab=98.26 E-value=0.00031 Score=74.73 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=116.2
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-----cCHHHHHHHHH-
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-----LRLEKLQEDIG- 169 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i~- 169 (835)
..|.|...-+++.+.+.+. ...+.|.|+-.+|||+|...+.+.. +. ..+. ++++++..- .+..++++.+.
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~~-~~~~-~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-QQ-QGYR-CVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred cccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-HH-CCCE-EEEEEeecCCCcccCCHHHHHHHHHH
Confidence 4578886666677777653 3689999999999999999999887 22 3443 557776542 24555555444
Q ss_pred ---HHhCCCCCC---C--CCCCHHHHHHHHHHHh---cCCcEEEEEcccCCccc----ccccccCCCC-------C-CCC
Q 003265 170 ---KKIGLVGDS---W--KSRSAEEKALDIFRSL---RGKRIVLLLDDIWERVD----LTKVGVPLPG-------P-QNT 226 (835)
Q Consensus 170 ---~~l~~~~~~---~--~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~----~~~l~~~l~~-------~-~~~ 226 (835)
++++....- + ..........-+.+.+ .+++.+|+||+|+.... ..++...+.. . ...
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 444433210 0 0112222233333332 36899999999964311 0111111100 0 111
Q ss_pred CcE-EEEEccchhh-hh----ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 227 TSK-VVFTTRFIDV-CG----SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 227 ~s~-IivTtR~~~v-~~----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
.-+ |++.+....+ .. .......+.|++++.+|...|..+.-..-. .+..++|...+||+|..+..++
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHHH
Confidence 112 2222211111 11 112245789999999999999887632211 2338889999999999999999
Q ss_pred HHHhcC
Q 003265 301 RAMAYR 306 (835)
Q Consensus 301 ~~l~~~ 306 (835)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999764
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.6e-05 Score=88.74 Aligned_cols=193 Identities=14% Similarity=0.118 Sum_probs=107.5
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|++..++.+.+.+..+.. +.+.++|+.|+||||+|+.++.... -.. |... ..+..-...+.+......
T Consensus 17 dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~------~~~~-~~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLN------PKDG-DCCNSCSVCESINTNQSV 88 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCC------CCCC-CCCcccHHHHHHHcCCCC
Confidence 679999999999999877554 4688999999999999999998862 111 1100 011111111111111000
Q ss_pred CC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchhhhh-c
Q 003265 175 VG---DSWKSRSAEEKALDIFRS-----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCG-S 242 (835)
Q Consensus 175 ~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~-~ 242 (835)
.- +.......++. +.+... ..+++-++|+|++... ..+..+...+. .....+.+|+ |+....+.. .
T Consensus 89 DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 89 DIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred ceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHHH
Confidence 00 00000111111 111111 1233447999999642 34555555554 3333455554 444444432 2
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITIGR 301 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~ 301 (835)
.+.+..+++.+++.++....+.+.+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 233568999999999999999887654332222 3567788999999664 4444443
No 101
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1e-05 Score=91.71 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=109.4
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.+||.+..+..|.+.+..+.+. .+.++|+.|+||||+|+.++...... ..+. ...+..-...+.|...-..
T Consensus 17 divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCCC
Confidence 6899999999999999887654 46899999999999999998876211 1000 0011111111122110000
Q ss_pred C---CCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchhhhh-c
Q 003265 175 V---GDSWKSRSAEEKALDIFRS-----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCG-S 242 (835)
Q Consensus 175 ~---~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~-~ 242 (835)
. -+.......++. +.+.+. ..+++-++|||++... .....+...+. ......++|+ ||....+.. .
T Consensus 89 D~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 89 DLIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchHH
Confidence 0 000000111111 112111 2466779999999643 34555555554 3334455555 444444432 2
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.+-+..|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+-.+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 233678999999999999999887643332222 356678899999987644443
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.21 E-value=1.3e-05 Score=86.75 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=98.7
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|+++.+++|.+.+.. ...+.+.++|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~ 190 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----S 190 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----H
Confidence 568999999999887642 124568999999999999999999987 3333 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc----------------cccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV----------------DLTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~-~~ 224 (835)
.+.... ++ ........+.+.. ...+.+|+|||++... .+..+...+.. ..
T Consensus 191 ~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 191 ELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred HHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111110 00 1112222233222 3467899999986421 01111111110 12
Q ss_pred CCCcEEEEEccchhh-----hhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 225 NTTSKVVFTTRFIDV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 225 ~~~s~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+.+||.||..... .....-...+.+...+.++..++|..++.........+ ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 346678888875432 11112356789999999999999998875544222222 345666677764
No 103
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=3.4e-06 Score=97.63 Aligned_cols=104 Identities=20% Similarity=0.279 Sum_probs=67.5
Q ss_pred cceEEEeccCCcc-cccchhhcCCCcceEEEeecCCCCcccc-ccCchHhhhhhcccEEeecccccc-ccchhhcCCCCC
Q 003265 467 HLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYCGQSWSSF-QLPVGMSELGSSLQLFDISLTLIK-ELPEELKKLVNL 543 (835)
Q Consensus 467 ~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~-~lp~~i~~l~~~L~~L~L~~~~i~-~Lp~~i~~L~~L 543 (835)
.++.|+|++|... .+|.. +..+++|+.|+|++| .+. .+|..++.+. +|++|+|++|++. .+|..+++|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N----~l~g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN----SIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC----cccCcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCC
Confidence 3666777754433 44444 677777777777777 554 5677777776 7777777777766 567777777777
Q ss_pred cEEecccccccCCcchHHhcc-CcccceeeecCcC
Q 003265 544 KCLNLRWAYRLNKIPRQLISN-YSRLCVLRMFGTG 577 (835)
Q Consensus 544 ~~L~L~~~~~l~~lp~~~i~~-L~~L~~L~l~~~~ 577 (835)
++|+|++|.....+|.. ++. +.++..+++.+|.
T Consensus 493 ~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 493 RILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CEEECcCCcccccCChH-HhhccccCceEEecCCc
Confidence 77777777444466765 443 3455666666553
No 104
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.7e-05 Score=82.85 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=103.8
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccC-----CCCCCeEE-EEEecCccCHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLES-----PTNFDCVI-WVVVSKDLRLEKLQEDI 168 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~~s~~~~~~~~~~~i 168 (835)
.++|.+..++.+.+.+..+.. +.+.++|++|+||||+|+.+.+..... ...|...+ -+......++.+ .+++
T Consensus 18 ~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i~~l 96 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-IRNL 96 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-HHHH
Confidence 689999999999999987654 478899999999999999998876210 11122111 111111111111 1122
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc-cchhhhh-ccC
Q 003265 169 GKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RFIDVCG-SME 244 (835)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt-R~~~v~~-~~~ 244 (835)
+.++... -..+++-++++|++... ..+..+...+. .....+.+|++| ....+.. ..+
T Consensus 97 ~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 97 IDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHHh
Confidence 2211100 01235558999998543 23444444443 233345555544 4333322 123
Q ss_pred CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 245 ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 245 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
....++..++++++....+.+.+.......+ .+.+..+++.++|.+-.+
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 3457899999999999998887654442222 367788888899866533
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.2e-05 Score=87.94 Aligned_cols=197 Identities=14% Similarity=0.155 Sum_probs=109.6
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEE-ecCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-VSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l~ 173 (835)
.++|.+..++.|.+++..+.++ .+.++|+.|+||||+|+.+++... -....+...|.. ....+..-..-+.+.....
T Consensus 17 eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 6899999999999998887664 588999999999999999998772 111111111110 0001111111111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc-cchhhhhc
Q 003265 174 LVG---DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RFIDVCGS 242 (835)
Q Consensus 174 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt-R~~~v~~~ 242 (835)
..- +.......++.. .+.+.+ .+++-++|+|++... ..+..+...+. .....+.+|++| +...+...
T Consensus 96 ~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 96 LNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHHH
Confidence 000 000011122222 223333 245568899998643 34566655554 344456655544 44444322
Q ss_pred c-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 243 M-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 243 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
. .....+++.++++++..+.+...+.......+ .+.+..|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1 22457889999999999888887643332222 46788899999997754433
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.16 E-value=1e-05 Score=80.27 Aligned_cols=187 Identities=15% Similarity=0.202 Sum_probs=118.7
Q ss_pred CcccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEE-EEecCccCHHHHHHHHHHHhC
Q 003265 95 RKVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIW-VVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l~ 173 (835)
+.++|.+..+..+.+.+.....+....+|++|.|||+-|+.++... --...|.+++. .++|+.....-+-..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~K------ 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREK------ 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhh------
Confidence 3678999999999999988788999999999999999999999987 33456665543 455554332211100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh--cCCc-EEEEEcccCCc--ccccccccCCCCCCCCCcEEE-EEccchhhhhc-cCCC
Q 003265 174 LVGDSWKSRSAEEKALDIFRSL--RGKR-IVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVV-FTTRFIDVCGS-MEAD 246 (835)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Ii-vTtR~~~v~~~-~~~~ 246 (835)
..+...+.....+.. .-++ -++|||+.+.. +.|..++..+. .....++.| ||+--..+... .+-.
T Consensus 109 -------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 109 -------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred -------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhhH
Confidence 011111111110000 0133 48899999764 56888777665 444455554 44443333221 1234
Q ss_pred ceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHH
Q 003265 247 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITI 299 (835)
Q Consensus 247 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 299 (835)
..|..++|.+++..+-+...+..+.+..+ .+..+.|++.++|- --|+.++
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 67889999999999999888876664444 36778899999985 3444444
No 107
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=1.7e-06 Score=66.63 Aligned_cols=57 Identities=28% Similarity=0.476 Sum_probs=37.7
Q ss_pred CcceEEEeecCCCCccccccCch-HhhhhhcccEEeeccccccccc-hhhcCCCCCcEEecccc
Q 003265 490 PSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQLFDISLTLIKELP-EELKKLVNLKCLNLRWA 551 (835)
Q Consensus 490 ~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~ 551 (835)
++|++|++++| .+..+|.. +..+. +|++|++++|.++.+| ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n----~l~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN----KLTEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS----TESEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC----CCCccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35667777777 66666643 34555 7777777777777664 35667777777777766
No 108
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=1.3e-07 Score=102.92 Aligned_cols=125 Identities=25% Similarity=0.296 Sum_probs=68.5
Q ss_pred cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchh-hcCCCCCcE
Q 003265 467 HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEE-LKKLVNLKC 545 (835)
Q Consensus 467 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~ 545 (835)
.|.+.++++|. +...+..+.-++.|+.|||++| .+...- .+..+. +|+.|||++|.+..+|.- ...+. |+.
T Consensus 165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshN----k~~~v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHN----KFTKVD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchh----hhhhhH-HHHhcc-cccccccccchhccccccchhhhh-hee
Confidence 34444555332 2222223555666777777777 454443 555565 777777777766666542 12222 666
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecc
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 616 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 616 (835)
|++++| .+..+-. +.+|++|+.|+++.|.+.+ ...+.-|..|..|..|++.+|.
T Consensus 237 L~lrnN-~l~tL~g--ie~LksL~~LDlsyNll~~--------------hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 237 LNLRNN-ALTTLRG--IENLKSLYGLDLSYNLLSE--------------HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeccc-HHHhhhh--HHhhhhhhccchhHhhhhc--------------chhhhHHHHHHHHHHHhhcCCc
Confidence 777666 4555543 6667777777777665552 2233334455555555555544
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=4.2e-05 Score=89.86 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.+||.+..++.|...+..+.+. .+.++|+.|+||||+|+.+++.+... ...... .+..-...+.|...-..
T Consensus 16 eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~~-------pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTST-------PCGECDSCVALAPGGPG 87 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCCC-------CCcccHHHHHHHcCCCC
Confidence 5799999999999999887654 57899999999999999998887211 111000 00000001111100000
Q ss_pred C-----CCCCCCCCHHHHHHHHHH-----HhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchhhhh
Q 003265 175 V-----GDSWKSRSAEEKALDIFR-----SLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCG 241 (835)
Q Consensus 175 ~-----~~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~ 241 (835)
. .+.......++.. .+.+ -..++.-++|||++... .....|...+. .....+.+|+ |+....+..
T Consensus 88 ~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhH
Confidence 0 0000011111111 1211 12355568999999643 44555655554 3334555554 544444433
Q ss_pred c-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHHHHH
Q 003265 242 S-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITIGRA 302 (835)
Q Consensus 242 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~~ 302 (835)
. .+.+..|++..++.++..+++.+.+..+....+ .+....|++.++|.+. ++..+-.+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 234678999999999999998887654432222 3556788999999874 33334333
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=2.9e-05 Score=87.43 Aligned_cols=181 Identities=17% Similarity=0.183 Sum_probs=106.6
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCC------------------CCCCeEEEEEec
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESP------------------TNFDCVIWVVVS 156 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~s 156 (835)
.++|.+..++.+..++..+... .+.++|+.|+||||+|+.++....... +.|...+++..+
T Consensus 17 divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~ 96 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAA 96 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecc
Confidence 6799999999999999886654 568999999999999999988761100 011112222211
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc
Q 003265 157 KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT 234 (835)
Q Consensus 157 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt 234 (835)
....+.+ .++++..... .-..+++-++|+|++... .....+...+. .....+.+|++|
T Consensus 97 ~~~~vd~-ir~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL~t 156 (527)
T PRK14969 97 SNTQVDA-MRELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILAT 156 (527)
T ss_pred ccCCHHH-HHHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEEEe
Confidence 1111111 1111111100 001356679999999653 23445555554 333455555544
Q ss_pred -cchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHH
Q 003265 235 -RFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITI 299 (835)
Q Consensus 235 -R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 299 (835)
....+... .+.+..+++.+++.++....+.+.+..+....+ .+..+.|++.++|.+- |+..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 43333211 122468899999999999888887654332222 3566788899999775 44444
No 111
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.12 E-value=1e-05 Score=85.17 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHH---
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKLQEDIGKKIGLVGDSWKSRSAEEKA--- 188 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--- 188 (835)
..-..++|+|++|+|||||++.+++.. . ..+|+..+||.+.+. .++.++++.+...+-...-+.+........
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 445689999999999999999999987 3 347999999998866 789999999965443322110111111111
Q ss_pred -HHHHHH-hcCCcEEEEEcccC
Q 003265 189 -LDIFRS-LRGKRIVLLLDDIW 208 (835)
Q Consensus 189 -~~l~~~-l~~k~~LlVlDdv~ 208 (835)
+..... -.|++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 112222 26899999999994
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=4.4e-05 Score=86.61 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=110.6
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--eEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFD--CVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.++|.+..++.|.+.+..+... .+.++|+.|+||||+|+.+++... -..... ...+-.+ ..-.--+.|...-
T Consensus 25 dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~c----g~c~~C~~i~~g~ 99 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLC----GVGEHCQAIMEGR 99 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccC----cccHHHHHHhcCC
Confidence 5799999999999999887654 688999999999999999998762 111110 0000000 0001111121110
Q ss_pred CCC---CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEc-cchhhhh
Q 003265 173 GLV---GDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTT-RFIDVCG 241 (835)
Q Consensus 173 ~~~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTt-R~~~v~~ 241 (835)
... .+.......++. +.+...+ .+++-++|+|++... .....+...+. .....+.+|++| ....+..
T Consensus 100 h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhhH
Confidence 000 000011112221 1222222 245568999999543 33555555554 334456665544 4444332
Q ss_pred c-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 242 S-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 242 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
. .+.+..+.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+...
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2 233578999999999999999887754442222 367788899999988655443
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.3e-05 Score=85.88 Aligned_cols=195 Identities=16% Similarity=0.172 Sum_probs=110.7
Q ss_pred cccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..+..|.+.+..+. ...+.++|+.|+||||+|+.+++... -....+. ..++.-...+.|......
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCCC
Confidence 67899999888888888765 46788999999999999999998872 1111100 001111111111111000
Q ss_pred CC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccc-hhhhhc-
Q 003265 175 VG---DSWKSRSAEEKALDIFRS-----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRF-IDVCGS- 242 (835)
Q Consensus 175 ~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~~- 242 (835)
.. +.......++ ++.+.+. ..+++-++|||++... .....+...+. .......+|++|.. ..+...
T Consensus 89 Dv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 89 DVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred ceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHHH
Confidence 00 0000011111 1122222 2356679999999643 33455555553 22334555554443 444322
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc-hHHHHHHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP-LALITIGRAM 303 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~~l 303 (835)
.+....+++.+++.++....+.+.+.......+ .+.++.|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223467899999999999999886654432222 367788899999965 6777766554
No 114
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.11 E-value=8.4e-06 Score=84.69 Aligned_cols=278 Identities=19% Similarity=0.203 Sum_probs=174.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
..+.+.++|.|||||||++-.+.. . ...| +.+.++....-.+...+.-.....++.+. .+.+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-----~~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-----QPGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-----ccchHHHHHHHH
Confidence 467899999999999999999988 4 3344 46667777776777777777777777643 233445556677
Q ss_pred HhcCCcEEEEEcccCCccc-ccccccCCCCCCCCCcEEEEEccchhhhhccCCCceEEeccCChH-HHHHHHHHHhCCCC
Q 003265 194 SLRGKRIVLLLDDIWERVD-LTKVGVPLPGPQNTTSKVVFTTRFIDVCGSMEADRKFLVACLSEK-DAWELFREKVGEET 271 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~~~~~-~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~ 271 (835)
...++|.++|+||-.+..+ -..+...+- .+...-.|+.|+|.... ........+.+|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7888999999999743211 011111111 23344568888886432 234456677777755 78889887663221
Q ss_pred --cCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccH-------HHHHhhhCC-------CcchhhHHHHHHhcCCC
Q 003265 272 --LKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKA-------EQWRQFAGL-------GKEVYPLLKFSYDSLQN 335 (835)
Q Consensus 272 --~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~-------~~w~~~~~~-------~~~~~~~l~~sy~~L~~ 335 (835)
..-...-......|.++.+|.|++|...++..+.-... +.|....+. .....+.+.+||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 11122234678899999999999999998887764221 222221111 23566789999999998
Q ss_pred chhhHHHhhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHHHHHHhcccccc---cccccchhHHHHHHH
Q 003265 336 DTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDTLVRACLLEEV---EDDKVKMHDVIRDMA 412 (835)
Q Consensus 336 ~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~---~~~~~~mhdlv~~~a 412 (835)
..+.-|.-++.|...+... ...|.+.|-.. ..+......-+..++++++.... +...++.-+-.|.++
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADV----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCcc----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7888888888887776543 23344433211 11223334446677777776543 333455555555555
Q ss_pred HH
Q 003265 413 LW 414 (835)
Q Consensus 413 ~~ 414 (835)
..
T Consensus 311 la 312 (414)
T COG3903 311 LA 312 (414)
T ss_pred HH
Confidence 43
No 115
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=5.3e-06 Score=87.78 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=30.8
Q ss_pred CCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccc-cccccch
Q 003265 464 KCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLT-LIKELPE 535 (835)
Q Consensus 464 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~-~i~~Lp~ 535 (835)
.|.+++.|++++|....+|. + -.+|+.|.+++|. .+..+|..+ +++|++|++++| .+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~---nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCN---NLTTLPGSI---PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCC---CcccCCchh---hhhhhheEccCccccccccc
Confidence 34556666666552224431 1 1236666666553 455555433 225666666665 5555553
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=1.8e-05 Score=87.34 Aligned_cols=169 Identities=13% Similarity=0.106 Sum_probs=103.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
...+.|+|..|+|||+|++++++.. .....-..+++++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 3568999999999999999999976 2111122344553 345666666665421 01223344444
Q ss_pred cCCcEEEEEcccCCcc---c-ccccccCCCCCCCCCcEEEEEccchh---------hhhccCCCceEEeccCChHHHHHH
Q 003265 196 RGKRIVLLLDDIWERV---D-LTKVGVPLPGPQNTTSKVVFTTRFID---------VCGSMEADRKFLVACLSEKDAWEL 262 (835)
Q Consensus 196 ~~k~~LlVlDdv~~~~---~-~~~l~~~l~~~~~~~s~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 262 (835)
+ +.-+||+||+.... . .+.+...+......|..||+|+.... +.+.+...-.+.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 3 34488999995321 1 22332222211233457888876432 333444556788999999999999
Q ss_pred HHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHH
Q 003265 263 FREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRA 302 (835)
Q Consensus 263 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 302 (835)
+.+++...... ..--+++..-|++.++|.|-.+..+...
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99988643311 0122578888999999999877666543
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=6.4e-05 Score=84.83 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=110.0
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.+||.+..++.|..++..+.+. .+.++|+.|+||||+|+.++...... ...+. ..++.-..-+.|...-+.
T Consensus 14 eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~~-------~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA-QGPTA-------TPCGVCESCVALAPNGPG 85 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-cCCCC-------CcccccHHHHHhhcccCC
Confidence 6899999999999999887655 46899999999999999999876211 11100 000000111111100000
Q ss_pred C-----CCCCCCCCHHH---HHHHHHHH-hcCCcEEEEEcccCC--cccccccccCCCCCCCCCcEEEE-Eccchhhhhc
Q 003265 175 V-----GDSWKSRSAEE---KALDIFRS-LRGKRIVLLLDDIWE--RVDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCGS 242 (835)
Q Consensus 175 ~-----~~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~~ 242 (835)
. .+.......++ +...+... ..+++-++|+|++.. ......+...+. .......+|+ ||....+...
T Consensus 86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll~T 164 (584)
T PRK14952 86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVLPT 164 (584)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhHHH
Confidence 0 00000011111 11111111 134556899999864 344555555554 3334455554 5554444322
Q ss_pred -cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHHHHHH
Q 003265 243 -MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITIGRAM 303 (835)
Q Consensus 243 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~~~l 303 (835)
.+-+..+++.+++.++..+.+.+.+.......+ .+....|++.++|.+- |+..+-.++
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233678999999999999888887654432222 3566778899999774 555554443
No 118
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=7.7e-05 Score=85.18 Aligned_cols=187 Identities=13% Similarity=0.115 Sum_probs=106.7
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..++.+.+.+..+.+ +.+.++|+.|+||||+|+.++........... +-.+... ... .+.
T Consensus 19 dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC~~C-------~~~---~~~ 85 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPCQEC-------IEN---VNN 85 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCchhHH-------HHh---hcC
Confidence 579999999999999987654 45679999999999999999887621110000 0000000 000 000
Q ss_pred CC-----CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcE-EEEEccchhhhh
Q 003265 175 VG-----DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSK-VVFTTRFIDVCG 241 (835)
Q Consensus 175 ~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~-IivTtR~~~v~~ 241 (835)
.. +.......++ ++.+.+.+ .+++-++|+|++... ..+..+...+. .....+. |++|++...+..
T Consensus 86 ~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 86 SLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhhH
Confidence 00 0000011111 22222222 356669999998643 34555555554 3333444 445555554432
Q ss_pred -ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHHH
Q 003265 242 -SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITIG 300 (835)
Q Consensus 242 -~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~ 300 (835)
..+.+..+++.+++.++....+...+.......+ .+.++.|++.++|.+- |+..+-
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2334578999999999999888876544332222 3567789999999764 444433
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=8.3e-05 Score=82.62 Aligned_cols=177 Identities=12% Similarity=0.145 Sum_probs=108.1
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCC-CC----------------C-eEEEEEec
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPT-NF----------------D-CVIWVVVS 156 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f----------------~-~~~wv~~s 156 (835)
.++|.+..++.+...+..+... +..++|+.|+||||+|+.++........ .. . .++.+..+
T Consensus 15 eiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaa 94 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAA 94 (535)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccc
Confidence 6899999999999999877665 5689999999999999999887611100 00 0 11111111
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEE
Q 003265 157 KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKV 230 (835)
Q Consensus 157 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~I 230 (835)
.. ...++....+... ..+++-++|+|++... .....+...+. .....+++
T Consensus 95 s~-----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~F 150 (535)
T PRK08451 95 SN-----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKF 150 (535)
T ss_pred cc-----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEE
Confidence 11 1122222222110 1245568999999643 33445555554 33445666
Q ss_pred EEEccch-hhhh-ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 231 VFTTRFI-DVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 231 ivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
|++|.+. .+.. ..+....+++.+++.++....+.+.+.......+ .+.++.|++.++|.+--+..+
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 6666543 2221 1223578999999999999998877654442222 367788999999988555443
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=7.8e-05 Score=84.76 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=109.1
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEE-ecCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-VSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l~ 173 (835)
.++|.+..+..|.+.+..+.+. .+.++|+.|+||||+|+.+++... -....+...|.. +...+..-..-+.+...-.
T Consensus 17 eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~ 95 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGTS 95 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccCC
Confidence 6899999999999988876654 588999999999999999998872 111111001110 0011111111111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEE-EEccchhhhh-
Q 003265 174 LVG---DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVV-FTTRFIDVCG- 241 (835)
Q Consensus 174 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Ii-vTtR~~~v~~- 241 (835)
..- +.......++.. .+.+.+ .+.+-++|+|++... .....+...+. .....+.+| +|++...+..
T Consensus 96 ~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 96 LNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhHH
Confidence 000 000111122222 222222 345558899998643 33555655554 333345544 4544444432
Q ss_pred ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHH
Q 003265 242 SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITI 299 (835)
Q Consensus 242 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 299 (835)
..+....+++.+++.++....+.+.+.......+ .+.+..|++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 2344678999999999998888876643332222 3677889999999554 44433
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=4.1e-06 Score=58.89 Aligned_cols=40 Identities=38% Similarity=0.526 Sum_probs=27.4
Q ss_pred cccEEeeccccccccchhhcCCCCCcEEecccccccCCcch
Q 003265 519 SLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPR 559 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~ 559 (835)
+|++|++++|+|+.+|..+++|++|++|++++| .+..++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 677777777777777777777777777777777 5555554
No 122
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=6e-07 Score=99.24 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=45.5
Q ss_pred hcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccC
Q 003265 486 FQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNY 565 (835)
Q Consensus 486 ~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L 565 (835)
+..+++|..|++.+| .|..+...+..+. +|++|++++|.|+.+ ..+..+..|+.|++.+| .+..++. +..+
T Consensus 91 l~~~~~l~~l~l~~n----~i~~i~~~l~~~~-~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~--~~~l 161 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN----KIEKIENLLSSLV-NLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG--LESL 161 (414)
T ss_pred cccccceeeeecccc----chhhcccchhhhh-cchheeccccccccc-cchhhccchhhheeccC-cchhccC--Cccc
Confidence 445555555555555 5555544355555 555555555555555 23444555555555555 4444443 4445
Q ss_pred cccceeeecCcCcc
Q 003265 566 SRLCVLRMFGTGWF 579 (835)
Q Consensus 566 ~~L~~L~l~~~~~~ 579 (835)
++|+.+++++|.+.
T Consensus 162 ~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIV 175 (414)
T ss_pred hhhhcccCCcchhh
Confidence 55555555555444
No 123
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.00031 Score=74.02 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=127.8
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.++||+.+++.+.+++.. ...+.+-|.|.+|.|||.+...++.+.. ....--.++++++..-.....++..|...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~-~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLS-KSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhh-hhcccceeEEEeeccccchHHHHHHHHHH
Confidence 689999999999988864 5677899999999999999999999872 11111255777776545566666666666
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcC--CcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch------hhhh
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLRG--KRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI------DVCG 241 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~------~v~~ 241 (835)
+-.... ......+....+.....+ +.+|+|+|+.+.. ..-..+...|....-+++|+|+----. ....
T Consensus 230 ~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 230 LLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 511110 112224555556665544 3689999998642 111222222221233455555422111 1111
Q ss_pred c-----cCCCceEEeccCChHHHHHHHHHHhCCCCcC--CChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHh
Q 003265 242 S-----MEADRKFLVACLSEKDAWELFREKVGEETLK--SDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQ 314 (835)
Q Consensus 242 ~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~--~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~ 314 (835)
. .-....+..+|.+.++..++|..+....... .++.++-.|++++.-.|.+--|+.+.-+++.- -..+|+.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI--~E~e~r~ 385 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI--AEIEKRK 385 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH--HHHHHhh
Confidence 1 1234578889999999999999988655421 12234444555555556666666666555432 2344544
No 124
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.05 E-value=0.00012 Score=74.01 Aligned_cols=191 Identities=15% Similarity=0.099 Sum_probs=113.3
Q ss_pred HHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC----eEEEEEecCccCHHHHHHHHHHHhCCCC
Q 003265 104 LEQVWTCLVE---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD----CVIWVVVSKDLRLEKLQEDIGKKIGLVG 176 (835)
Q Consensus 104 ~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 176 (835)
++++.+++.. ...+-+.|+|.+|.|||++++.+...+. ....-+ .++.|.+...++...++..|+.+++.+.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 3444444443 3456799999999999999999998872 211111 4777788888999999999999999886
Q ss_pred CCCCCCCHHHHHHHHHHHhcC-CcEEEEEcccCCc-----cc---ccccccCCCCCCCCCcEEEEEccchhhhhcc----
Q 003265 177 DSWKSRSAEEKALDIFRSLRG-KRIVLLLDDIWER-----VD---LTKVGVPLPGPQNTTSKVVFTTRFIDVCGSM---- 243 (835)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~---~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~---- 243 (835)
.. ..............++. +-=+||+|++.+. .. .-.+...+. ..-.-+-|.+.|+...-+-..
T Consensus 125 ~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 125 RP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred CC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccHHHHHHhccCHHH
Confidence 42 33444445455555544 4458999999652 11 111111121 222345677777753322111
Q ss_pred -CCCceEEeccCChHH-HHHHHHHH---hCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 244 -EADRKFLVACLSEKD-AWELFREK---VGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 244 -~~~~~~~l~~L~~~~-~~~lf~~~---~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+-...+.+.....++ ...|+... +.-.. .+.-...++++.|...++|+.--+..+
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 113456666665444 34444322 11111 122233689999999999987554443
No 125
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=4.2e-06 Score=82.11 Aligned_cols=205 Identities=14% Similarity=0.060 Sum_probs=101.2
Q ss_pred cCCCcceEEEeecCCCCccccccC---chHhhhhhcccEEeeccccc----cccchhhcCCCCCcEEecccccc-cCCcc
Q 003265 487 QFMPSLKVLKMSYCGQSWSSFQLP---VGMSELGSSLQLFDISLTLI----KELPEELKKLVNLKCLNLRWAYR-LNKIP 558 (835)
Q Consensus 487 ~~l~~Lr~L~Ls~~~~~~~i~~lp---~~i~~l~~~L~~L~L~~~~i----~~Lp~~i~~L~~L~~L~L~~~~~-l~~lp 558 (835)
..++.++.|||.+| .|.... .-+-+++ +|++|+|++|.+ ..+| -.+.+|++|-|.++.- .....
T Consensus 68 ~~~~~v~elDL~~N----~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~ 139 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN----LISDWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQST 139 (418)
T ss_pred HHhhhhhhhhcccc----hhccHHHHHHHHhcCc-cceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhh
Confidence 45666777777777 443332 2223444 777777777743 3344 3456777777766631 11222
Q ss_pred hHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeec
Q 003265 559 RQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFL 638 (835)
Q Consensus 559 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l 638 (835)
. .+..++++++|+++.|++..+....+ ..+.. -+.+.+|+...+............+..+++..+.+
T Consensus 140 s-~l~~lP~vtelHmS~N~~rq~n~Dd~----------c~e~~--s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 140 S-SLDDLPKVTELHMSDNSLRQLNLDDN----------CIEDW--STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred h-hhhcchhhhhhhhccchhhhhccccc----------ccccc--chhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 2 25667777777777765443222110 00000 01233333332222222222222233456666666
Q ss_pred CCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc-------hhh
Q 003265 639 PLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT-------FLV 711 (835)
Q Consensus 639 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-------~l~ 711 (835)
..|...+... ......++.+..|+++.+..-.--..+.. ..|+.|+.|.+.+.+-+..+. .++
T Consensus 207 ~e~PlK~~s~-ek~se~~p~~~~LnL~~~~idswasvD~L---------n~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 207 CEGPLKTESS-EKGSEPFPSLSCLNLGANNIDSWASVDAL---------NGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred ecCcccchhh-cccCCCCCcchhhhhcccccccHHHHHHH---------cCCchhheeeccCCcccccccCCcceEEEEe
Confidence 6653322111 12344455566666665432211112222 358888888888887555443 245
Q ss_pred ccCCccEEeee
Q 003265 712 FAPSLKSLSLY 722 (835)
Q Consensus 712 ~l~~L~~L~L~ 722 (835)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 67888877543
No 126
>PLN03150 hypothetical protein; Provisional
Probab=98.03 E-value=9.8e-06 Score=93.87 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=70.7
Q ss_pred cceEEEeecCCCCcccc-ccCchHhhhhhcccEEeecccccc-ccchhhcCCCCCcEEecccccccCCcchHHhccCccc
Q 003265 491 SLKVLKMSYCGQSWSSF-QLPVGMSELGSSLQLFDISLTLIK-ELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRL 568 (835)
Q Consensus 491 ~Lr~L~Ls~~~~~~~i~-~lp~~i~~l~~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 568 (835)
.++.|+|++| .+. .+|..++.+. +|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|.. +++|++|
T Consensus 419 ~v~~L~L~~n----~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L 492 (623)
T PLN03150 419 FIDGLGLDNQ----GLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSL 492 (623)
T ss_pred EEEEEECCCC----CccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCC
Confidence 4788999999 554 6888999998 9999999999887 78889999999999999999544578876 8999999
Q ss_pred ceeeecCcCcc
Q 003265 569 CVLRMFGTGWF 579 (835)
Q Consensus 569 ~~L~l~~~~~~ 579 (835)
++|++++|.+.
T Consensus 493 ~~L~Ls~N~l~ 503 (623)
T PLN03150 493 RILNLNGNSLS 503 (623)
T ss_pred CEEECcCCccc
Confidence 99999988765
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.0001 Score=84.35 Aligned_cols=177 Identities=12% Similarity=0.156 Sum_probs=108.5
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccC--------------------CCCCCeEEEEE
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLES--------------------PTNFDCVIWVV 154 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv~ 154 (835)
.++|.+..++.|...+..+... .+.++|+.|+||||+|+.++...... ..+|+. ..+.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~ld 96 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HELD 96 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEec
Confidence 6899999999999999887654 57899999999999999988875200 112332 2222
Q ss_pred ecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE
Q 003265 155 VSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 232 (835)
Q Consensus 155 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv 232 (835)
.+....+.++. +++.++... -..+++=++|+|++... ..+..+...+. .....+.+|+
T Consensus 97 ~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifIL 156 (614)
T PRK14971 97 AASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFIL 156 (614)
T ss_pred ccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEEE
Confidence 22111111111 111211110 01234558899998643 34556666654 3334555554
Q ss_pred -Eccchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 233 -TTRFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 233 -TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
|++...+... .+.+..+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5554444332 234678999999999999999887655443222 356788899999976543
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.01 E-value=6.6e-05 Score=77.28 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=80.8
Q ss_pred cccchHHHHHHHHHHhh---------c------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 96 KVVGLQSQLEQVWTCLV---------E------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---------~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
.++|.+..+++|.+... . .....+.++|++|+||||+|+.++.... ..+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~-~~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK-EMNVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH-hcCcccCCceEEecHH--
Confidence 57898877766643321 0 1345678999999999999999988751 1111111123333221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc----------cccccccCCCCCCCCCcEE
Q 003265 161 LEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV----------DLTKVGVPLPGPQNTTSKV 230 (835)
Q Consensus 161 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~s~I 230 (835)
++. ...- ..........+.. . ..-+|++|++.... ..+.+...+. .......+
T Consensus 84 --~l~----~~~~-------g~~~~~~~~~~~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~v 146 (261)
T TIGR02881 84 --DLV----GEYI-------GHTAQKTREVIKK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVL 146 (261)
T ss_pred --Hhh----hhhc-------cchHHHHHHHHHh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEE
Confidence 111 1110 0111111222222 1 23489999996421 1223333332 22233355
Q ss_pred EEEccchhh----------hhccCCCceEEeccCChHHHHHHHHHHhCCCC
Q 003265 231 VFTTRFIDV----------CGSMEADRKFLVACLSEKDAWELFREKVGEET 271 (835)
Q Consensus 231 ivTtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 271 (835)
|+++...+. .+.+ ...+.+++++.++..+++.+.+....
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred EecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 555543322 1211 34688999999999999988875443
No 129
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=7.5e-07 Score=98.46 Aligned_cols=194 Identities=20% Similarity=0.168 Sum_probs=129.7
Q ss_pred cCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCc
Q 003265 487 QFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYS 566 (835)
Q Consensus 487 ~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~ 566 (835)
..+..+..+++..| .+..+-..++.+. +|.+|++.+|.|+.+...+..+.+|++|++++| .+..+.. +..++
T Consensus 69 ~~l~~l~~l~l~~n----~i~~~~~~l~~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~ 140 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN----LIAKILNHLSKLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLT 140 (414)
T ss_pred HHhHhHHhhccchh----hhhhhhccccccc-ceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhcc
Confidence 45677778888888 7877666688888 999999999999999776899999999999999 7888877 88999
Q ss_pred ccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCc
Q 003265 567 RLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATS 646 (835)
Q Consensus 567 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 646 (835)
.|+.|++.+|.+.. +..+..+.+|+.+++..+.+..++... ......++.+.+.++....
T Consensus 141 ~L~~L~l~~N~i~~-----------------~~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~- 200 (414)
T KOG0531|consen 141 LLKELNLSGNLISD-----------------ISGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIRE- 200 (414)
T ss_pred chhhheeccCcchh-----------------ccCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhc-
Confidence 99999999998874 445666888888888888776665520 1223466777776654321
Q ss_pred ccccccccccccccceecccccccccccccchhcccccCCcccCCC--ccEEeEecCCCCCCC-chhhccCCccEEeeec
Q 003265 647 IIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRS--LHLVAIYECHKLKDL-TFLVFAPSLKSLSLYG 723 (835)
Q Consensus 647 ~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~--L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~ 723 (835)
+ ..+..+..+..+++..+.... ..... .+.. |+.+++.++. +..+ ..+..++++..|++.+
T Consensus 201 i---~~~~~~~~l~~~~l~~n~i~~---~~~l~---------~~~~~~L~~l~l~~n~-i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 201 I---EGLDLLKKLVLLSLLDNKISK---LEGLN---------ELVMLHLRELYLSGNR-ISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred c---cchHHHHHHHHhhccccccee---ccCcc---------cchhHHHHHHhcccCc-cccccccccccccccccchhh
Confidence 1 123333344444444322111 11111 1222 6777777663 3433 3455666666666665
Q ss_pred C
Q 003265 724 C 724 (835)
Q Consensus 724 ~ 724 (835)
+
T Consensus 265 n 265 (414)
T KOG0531|consen 265 N 265 (414)
T ss_pred c
Confidence 4
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=4.6e-05 Score=84.11 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-eEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
..-+.|+|++|+|||+|++.+++... ....+ .++|++. .++..++...+... .. ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHH
Confidence 34699999999999999999999872 22222 4666654 34555555555321 11 223333
Q ss_pred hcCCcEEEEEcccCCcc---cc-cccccCCCCCCCCCcEEEEEccc-hh--------hhhccCCCceEEeccCChHHHHH
Q 003265 195 LRGKRIVLLLDDIWERV---DL-TKVGVPLPGPQNTTSKVVFTTRF-ID--------VCGSMEADRKFLVACLSEKDAWE 261 (835)
Q Consensus 195 l~~k~~LlVlDdv~~~~---~~-~~l~~~l~~~~~~~s~IivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~ 261 (835)
.+.+.-+|++||+.... .+ .++...+......|..||+||.. .. +.+.+.....+.+++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33456689999996321 11 12222221111234568888753 21 22334445678999999999999
Q ss_pred HHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 262 LFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 262 lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
++.+.+.......+ +++..-|++.+.|.--.+..
T Consensus 271 IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 271 IARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHHH
Confidence 99988765443333 46778888888876544443
No 131
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.01 E-value=0.00012 Score=75.82 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRG 197 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 197 (835)
-+.++|++|+|||++|+.++... ...+.....-++.++. .++ ...+... +.......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l-~~~g~~~~~~~v~v~~----~~l----~~~~~g~-------~~~~~~~~~~~-a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL-HRLGYVRKGHLVSVTR----DDL----VGQYIGH-------TAPKTKEILKR-A-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH-HHcCCcccceEEEecH----HHH----hHhhccc-------chHHHHHHHHH-c--
Confidence 58899999999999999888776 2222222223444442 122 2222111 11111122222 2
Q ss_pred CcEEEEEcccCCc-----------ccccccccCCCCCCCCCcEEEEEccchhhhhcc--------CCCceEEeccCChHH
Q 003265 198 KRIVLLLDDIWER-----------VDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSM--------EADRKFLVACLSEKD 258 (835)
Q Consensus 198 k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~~ 258 (835)
..-+|+||++... .....+...+. ....+.+||+++......... .....+.+++++.+|
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 3358999998522 11223333333 334456777776543221111 113578999999999
Q ss_pred HHHHHHHHhCC
Q 003265 259 AWELFREKVGE 269 (835)
Q Consensus 259 ~~~lf~~~~~~ 269 (835)
..+++...+..
T Consensus 200 l~~I~~~~l~~ 210 (284)
T TIGR02880 200 LLVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 132
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.99 E-value=0.00011 Score=79.96 Aligned_cols=169 Identities=21% Similarity=0.288 Sum_probs=97.0
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|+++.++++.+.+.. ...+.|.++|++|+|||++|+.+++.. ... |+.++. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----H
Confidence 467999999998887631 235678999999999999999999987 222 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc----------c------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV----------D------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~l~~~l~~-~~ 224 (835)
++ ..... .........+.+.. ...+.+|+|||++... + +..+...+.. ..
T Consensus 200 ~l----~~~~~--------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 EL----VQKFI--------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HH----hHhhc--------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 11110 01122223333332 3567899999996421 0 1111111110 12
Q ss_pred CCCcEEEEEccchhh-hhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 225 NTTSKVVFTTRFIDV-CGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 225 ~~~s~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
..+..||.||..... ...+ .-...+.+.+.+.++-.++|..++.........++ ..+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 235677777765432 1111 22457899999999999999988765443322333 4455566665
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00018 Score=79.53 Aligned_cols=180 Identities=15% Similarity=0.187 Sum_probs=105.8
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC--------------------CCCeEEEEE
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPT--------------------NFDCVIWVV 154 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--------------------~f~~~~wv~ 154 (835)
.++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.++........ +++ .+++.
T Consensus 18 diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~ 96 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEID 96 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEee
Confidence 689999999999999987665 56789999999999999999887621100 111 11111
Q ss_pred ecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE
Q 003265 155 VSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 232 (835)
Q Consensus 155 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv 232 (835)
......+.++ +++.+.+. ..-..+++-++|+|++... .....+...+. .......+|+
T Consensus 97 g~~~~gid~i-r~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~Il 156 (451)
T PRK06305 97 GASHRGIEDI-RQINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKFFL 156 (451)
T ss_pred ccccCCHHHH-HHHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceEEE
Confidence 1111011111 11111110 0011356678999998543 23444555554 3334556665
Q ss_pred Ec-cchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHH
Q 003265 233 TT-RFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITI 299 (835)
Q Consensus 233 Tt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 299 (835)
+| +...+... .+....+++.++++++....+.+.+.......+ .+.+..|++.++|.+- |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 55 33333222 233567899999999999988877654332222 3677889999999764 44443
No 134
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00021 Score=79.47 Aligned_cols=176 Identities=14% Similarity=0.198 Sum_probs=105.0
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCeEEEEEec
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPT------------------NFDCVIWVVVS 156 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~s 156 (835)
.++|.+..+..+...+..+... .+.++|+.|+||||+|+.++........ .+...+.+..+
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa 96 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA 96 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc
Confidence 5789999999999999876554 5678999999999999999887621000 01111122111
Q ss_pred CccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcE
Q 003265 157 KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSK 229 (835)
Q Consensus 157 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~ 229 (835)
.. ...++ ++.+.... .+++-++|+|++... .....+...+. .......
T Consensus 97 s~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v 151 (486)
T PRK14953 97 SN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTI 151 (486)
T ss_pred cC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeE
Confidence 11 11111 11222222 356679999998643 33445544554 3333444
Q ss_pred EEE-Eccchhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 230 VVF-TTRFIDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 230 Iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+|+ |++...+... ......+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 444 5554443321 223467899999999999888887654432222 356677888899976544443
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.98 E-value=8.8e-05 Score=88.33 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=99.5
Q ss_pred CcccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCeEEE-EEecCccCHHHHHHHHH
Q 003265 95 RKVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIW-VVVSKDLRLEKLQEDIG 169 (835)
Q Consensus 95 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~w-v~~s~~~~~~~~~~~i~ 169 (835)
++++||+.++.+++..|......-+.++|++|+||||+|+.++.+.. ... -.+..+| +..+. +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~-~~~v~~~l~~~~i~~l~l~~------l----- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA-AGDVPPALRNVRLLSLDLGL------L----- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh-hCCCCccccCCeEEEeehhh------h-----
Confidence 37899999999999999887667778999999999999999999862 111 1123332 22211 0
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccCCcc-------ccc--ccccCCCCCCCCCcEEEEEccchh
Q 003265 170 KKIGLVGDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIWERV-------DLT--KVGVPLPGPQNTTSKVVFTTRFID 238 (835)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~--~l~~~l~~~~~~~s~IivTtR~~~ 238 (835)
.... .-....+.....+...+ .+++.+|++|++.... .-+ .+..+.. .. ..-++|-||...+
T Consensus 255 ---~ag~--~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l-~~-G~l~~IgaTT~~e 327 (852)
T TIGR03345 255 ---QAGA--SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL-AR-GELRTIAATTWAE 327 (852)
T ss_pred ---hccc--ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh-hC-CCeEEEEecCHHH
Confidence 0000 01112233333333333 2478999999985421 111 1222222 11 2345555555433
Q ss_pred hh-------hccCCCceEEeccCChHHHHHHHHHHhCCCC-cCCChhHHHHHHHHHHHcCCc
Q 003265 239 VC-------GSMEADRKFLVACLSEKDAWELFREKVGEET-LKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 239 v~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~Gl 292 (835)
.. ....-...+.+++++.++..+++......-. ...-.-..+....+++.+++.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 21 1112346899999999999999754432111 001111235556666666654
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=97.97 E-value=0.00016 Score=74.87 Aligned_cols=155 Identities=13% Similarity=0.083 Sum_probs=83.2
Q ss_pred cccchHHHHHHHHHHhh--------c-------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 96 KVVGLQSQLEQVWTCLV--------E-------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~--------~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
.++|.+..+++|.++.. . .....+.++|++|+||||+|+.++... ...+.-...-|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~~-- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTRD-- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecHH--
Confidence 47777666665544321 0 122347899999999999999998875 21222122224544421
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc-----------ccccccccCCCCCCCCCcE
Q 003265 161 LEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER-----------VDLTKVGVPLPGPQNTTSK 229 (835)
Q Consensus 161 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~s~ 229 (835)
++ ...+... ........+.+ . ..-+|+||++... .....+...+. ....+.+
T Consensus 101 --~l----~~~~~g~-------~~~~~~~~l~~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~ 163 (287)
T CHL00181 101 --DL----VGQYIGH-------TAPKTKEVLKK-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLV 163 (287)
T ss_pred --HH----HHHHhcc-------chHHHHHHHHH-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEE
Confidence 22 2222111 11111112222 2 2349999998532 11122223333 3344567
Q ss_pred EEEEccchhhhhcc--------CCCceEEeccCChHHHHHHHHHHhCCC
Q 003265 230 VVFTTRFIDVCGSM--------EADRKFLVACLSEKDAWELFREKVGEE 270 (835)
Q Consensus 230 IivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~lf~~~~~~~ 270 (835)
||+++....+.... .....+.+++++.+|..+++.+.+...
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 77777643331111 124578999999999999998877543
No 137
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=3.3e-06 Score=82.88 Aligned_cols=210 Identities=21% Similarity=0.145 Sum_probs=122.5
Q ss_pred cceEEEeecCCCCcccccc--CchHhhhhhcccEEeecccccc---ccchhhcCCCCCcEEecccccccCCcchHHhc--
Q 003265 491 SLKVLKMSYCGQSWSSFQL--PVGMSELGSSLQLFDISLTLIK---ELPEELKKLVNLKCLNLRWAYRLNKIPRQLIS-- 563 (835)
Q Consensus 491 ~Lr~L~Ls~~~~~~~i~~l--p~~i~~l~~~L~~L~L~~~~i~---~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~-- 563 (835)
.|..|.+.++ .|... ...++...++++.|||.+|.|+ ++-..+.+|+.|++|+|+.|+ +..- |+
T Consensus 46 a~ellvln~~----~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~----I~~l 116 (418)
T KOG2982|consen 46 ALELLVLNGS----IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSD----IKSL 116 (418)
T ss_pred chhhheecCC----CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCc----cccC
Confidence 4556666677 44432 2346665569999999999776 455567889999999999883 3221 33
Q ss_pred --cCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCC
Q 003265 564 --NYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLA 641 (835)
Q Consensus 564 --~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~ 641 (835)
.+.+|+.|-+.++.... ...-..+..++.++.|+++.| +++.+.+..+
T Consensus 117 p~p~~nl~~lVLNgT~L~w--------------~~~~s~l~~lP~vtelHmS~N----------------~~rq~n~Dd~ 166 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSW--------------TQSTSSLDDLPKVTELHMSDN----------------SLRQLNLDDN 166 (418)
T ss_pred cccccceEEEEEcCCCCCh--------------hhhhhhhhcchhhhhhhhccc----------------hhhhhccccc
Confidence 34688999998877653 112223455666667776644 3344444432
Q ss_pred CCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc---hhhccCCccE
Q 003265 642 GDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT---FLVFAPSLKS 718 (835)
Q Consensus 642 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~---~l~~l~~L~~ 718 (835)
..... .+.++.|.+.+|....-....... ..|||+..+.+..|+ +++.. ....+|++-.
T Consensus 167 c~e~~---------s~~v~tlh~~~c~~~~w~~~~~l~--------r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 167 CIEDW---------STEVLTLHQLPCLEQLWLNKNKLS--------RIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSC 228 (418)
T ss_pred ccccc---------chhhhhhhcCCcHHHHHHHHHhHH--------hhcccchheeeecCc-ccchhhcccCCCCCcchh
Confidence 22111 123444444444322211111111 248888888888885 34333 2446777777
Q ss_pred EeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccC
Q 003265 719 LSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYW 768 (835)
Q Consensus 719 L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 768 (835)
|+|+.+ ++.+..+ ...+.+||.|..|.+.+.|-+..+..
T Consensus 229 LnL~~~-~idswas----------vD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 229 LNLGAN-NIDSWAS----------VDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhccc-ccccHHH----------HHHHcCCchhheeeccCCcccccccC
Confidence 887754 3444322 12567788888888888776665543
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00021 Score=80.92 Aligned_cols=190 Identities=14% Similarity=0.114 Sum_probs=107.8
Q ss_pred cccchHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..+..+...+..+... .+.++|+.|+||||+|+.++.... -...... ..+....+ -+.|...-..
T Consensus 17 diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~----C~~i~~~~~~ 88 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSS----CKSIDNDNSL 88 (563)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchH----HHHHHcCCCC
Confidence 6799999999999999876554 588999999999999999998862 1111100 00000000 0111110000
Q ss_pred C---CCCCCCCCHHHHHHHHHH-----HhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEcc-chhhhhc-
Q 003265 175 V---GDSWKSRSAEEKALDIFR-----SLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTR-FIDVCGS- 242 (835)
Q Consensus 175 ~---~~~~~~~~~~~~~~~l~~-----~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR-~~~v~~~- 242 (835)
. -+.......++.. .+.+ -..+++-++|+|++... ..+..+...+. .....+.+|++|. ...+...
T Consensus 89 dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 89 DVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHHH
Confidence 0 0000011122221 1211 12356668999998543 34556665654 3444556655553 3333222
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.+....++..+++.++..+.+.+.+.......+ .+.+..|++.++|.+-.+..
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 233567899999999999888887644332222 36677788899998754433
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.94 E-value=0.00014 Score=78.11 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=71.0
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 175 (835)
.+++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++..+..++.....- .
T Consensus 176 d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~ 248 (459)
T PRK11331 176 DLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRP----N 248 (459)
T ss_pred cccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCC----C
Confidence 578889999999988875 3577789999999999999999987 44457888999999998876666542211 0
Q ss_pred CCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccCC
Q 003265 176 GDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIWE 209 (835)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~ 209 (835)
....... .....+.+...- .++++++|+|++..
T Consensus 249 ~vgy~~~-~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 249 GVGFRRK-DGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred CCCeEec-CchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 0000000 001111222222 24789999999953
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00022 Score=81.94 Aligned_cols=192 Identities=14% Similarity=0.151 Sum_probs=110.0
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.++.... -...... ...++.....+.|......
T Consensus 17 eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~~------~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDPK------GRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC------CCCCccCHHHHHHhcCCCC
Confidence 689999999999988887654 4568999999999999999998761 1110000 0011111222333221111
Q ss_pred CC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEcc-chhhhhc-
Q 003265 175 VG---DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTR-FIDVCGS- 242 (835)
Q Consensus 175 ~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR-~~~v~~~- 242 (835)
.. +.......++. ..+.+.+ .+++-++|||++... ...+.+...+. .....+.+|+++. ...+...
T Consensus 90 d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 90 DVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred eEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHHH
Confidence 00 00011112221 2222222 245668999998543 34555555554 3334555655553 3333221
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.+....+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223467889999999999988887755442222 366788999999988655443
No 141
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.92 E-value=8.6e-05 Score=81.86 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
...+.|+|+.|+|||+|++++++.. .....-..++++++ .++...+...+... ... .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSS------EKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 3568999999999999999999987 22111124566643 23444455444321 122 223333
Q ss_pred cCCcEEEEEcccCCccc---c-cccccCCCCCCCCCcEEEEEccchh---------hhhccCCCceEEeccCChHHHHHH
Q 003265 196 RGKRIVLLLDDIWERVD---L-TKVGVPLPGPQNTTSKVVFTTRFID---------VCGSMEADRKFLVACLSEKDAWEL 262 (835)
Q Consensus 196 ~~k~~LlVlDdv~~~~~---~-~~l~~~l~~~~~~~s~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 262 (835)
++ .-+|||||+..... + +.+...+......+..||+|+.... +.+.+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 34899999964211 1 1222222101123456778776421 223333445789999999999999
Q ss_pred HHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 263 FREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 263 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
+.+.+.......+ +++..-|++.+.|..-.+..
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 9998865443333 46777888888887655443
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00081 Score=70.56 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=111.1
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccC------------CCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLES------------PTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~s~~~~~~ 162 (835)
.++|.+..++.+.+.+..+.+ +...++|+.|+||+++|..++...... .....-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 578999999999999988765 789999999999999999988775211 1112223444211000000
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEcc
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTR 235 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR 235 (835)
.+-..-+...+...........+ .++.+.+.+ .+.+-++|+|++... .....+...+. ......-|++|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp~~~fILi~~~ 162 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE-EPGNGTLILIAPS 162 (314)
T ss_pred ccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh-CCCCCeEEEEECC
Confidence 00001111111000000111122 233444444 345679999998643 34455555554 2333333444444
Q ss_pred chhhhh-ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 236 FIDVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 236 ~~~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
...+.. ..+-+..+++.++++++..+.+.+....+. . ......++..++|.|..+..+.
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~----~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--L----NINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--c----hhHHHHHHHHcCCCHHHHHHHH
Confidence 444332 223467899999999999999988643221 0 1113577889999997665543
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0003 Score=80.59 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.++.... ....+... ...+..-...+.+......
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCCc
Confidence 578999999999999887654 5788999999999999999999872 11111000 0111111222222221111
Q ss_pred CC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchhhhhc-
Q 003265 175 VG---DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCGS- 242 (835)
Q Consensus 175 ~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~~- 242 (835)
.. +.......+.. +.+...+ .+++-++|+|++... .....+...+. .....+.+|+ |+....+...
T Consensus 91 D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 91 DVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred cEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHHH
Confidence 00 00011112222 2222222 245568999999643 34555655554 3333444444 4443333222
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
.+....+++.+++.++....+.+.+.......+ .+.+..|++.++|.+..+..+.
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 233567888999999988888776654332222 2567889999999876554443
No 144
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.91 E-value=7.8e-05 Score=83.25 Aligned_cols=162 Identities=20% Similarity=0.180 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
...+.|+|+.|+|||+|++.+++... ....-..++++++. ++...+...+... .. ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRNN-------TM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHcC-------cH----HHHHHHH
Confidence 35689999999999999999999872 21112235566443 3334444444211 11 2233333
Q ss_pred cCCcEEEEEcccCCcc----cccccccCCCCCCCCCcEEEEEccchh---------hhhccCCCceEEeccCChHHHHHH
Q 003265 196 RGKRIVLLLDDIWERV----DLTKVGVPLPGPQNTTSKVVFTTRFID---------VCGSMEADRKFLVACLSEKDAWEL 262 (835)
Q Consensus 196 ~~k~~LlVlDdv~~~~----~~~~l~~~l~~~~~~~s~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~l 262 (835)
+ +.-+|||||+.... ..+.+...+......|..||+|+.... +.+.+.....+.+++.+.++-.++
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 34489999995321 112222212101122445788776532 233444556899999999999999
Q ss_pred HHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 263 FREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 263 f~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+.+.+.......+ +++..-|++.+.|..-.+..+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHHHH
Confidence 9998865432223 467888888888876654433
No 145
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.88 E-value=0.00049 Score=67.49 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLV----EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.|++++.|++-.. .....-+.++|..|.|||++++++.+.+
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 78999999998876543 3455678889999999999999999988
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.88 E-value=0.00013 Score=86.41 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=90.0
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CCCC-CeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLES--PTNF-DCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
+++||+++++++++.|......-+.++|++|+|||++|+.++...... ...+ +..+|. + +...+ ....
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l----~a~~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL----LAGT 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH----hhhc
Confidence 789999999999999987666677899999999999999999986211 1111 333442 1 11111 1100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc----------cccccccCCCCCCCCCcEEEEEccchhhh-
Q 003265 173 GLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV----------DLTKVGVPLPGPQNTTSKVVFTTRFIDVC- 240 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~s~IivTtR~~~v~- 240 (835)
. -..+.++....+.+.+ ..++.+|++|++..-. +...+..+.. ..+ .-++|-+|...+..
T Consensus 254 ~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l-~~g-~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 254 K------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL-SSG-KLRCIGSTTYEEYKN 325 (731)
T ss_pred c------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH-hCC-CeEEEEecCHHHHHH
Confidence 0 1123444555555544 3468999999985321 1112222211 112 23444444432211
Q ss_pred ------hccCCCceEEeccCChHHHHHHHHHHh
Q 003265 241 ------GSMEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 241 ------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
....-...+.++.++.++..+++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111223578999999999999998654
No 147
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=4.7e-05 Score=80.73 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=51.5
Q ss_pred hcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccc-cccccchhhcCCCCCcEEecccccccCCcchHHhcc
Q 003265 486 FQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLT-LIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISN 564 (835)
Q Consensus 486 ~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~-~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 564 (835)
+..+++++.|++++| .+..+| .++++|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|.+
T Consensus 48 ~~~~~~l~~L~Is~c----~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s---- 113 (426)
T PRK15386 48 IEEARASGRLYIKDC----DIESLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES---- 113 (426)
T ss_pred HHHhcCCCEEEeCCC----CCcccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc----
Confidence 345688888888888 777777 24447888888875 677777655 357888888888666666653
Q ss_pred CcccceeeecC
Q 003265 565 YSRLCVLRMFG 575 (835)
Q Consensus 565 L~~L~~L~l~~ 575 (835)
|++|++.+
T Consensus 114 ---Le~L~L~~ 121 (426)
T PRK15386 114 ---VRSLEIKG 121 (426)
T ss_pred ---cceEEeCC
Confidence 55566653
No 148
>PRK06620 hypothetical protein; Validated
Probab=97.87 E-value=5.9e-05 Score=74.52 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLR 196 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 196 (835)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . . ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~--------------------~---~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF--------------------N---E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh--------------------c---h-------hHH-
Confidence 668999999999999999987765 11 1211 0000 0 0 011
Q ss_pred CCcEEEEEcccCCcc--cccccccCCCCCCCCCcEEEEEccchh-------hhhccCCCceEEeccCChHHHHHHHHHHh
Q 003265 197 GKRIVLLLDDIWERV--DLTKVGVPLPGPQNTTSKVVFTTRFID-------VCGSMEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 197 ~k~~LlVlDdv~~~~--~~~~l~~~l~~~~~~~s~IivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
+..-++++||+.... .+-.+...+ ...|..||+|++... +.+.+...-.++++++++++...++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~---~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNII---NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHH---HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 123478899995321 121222222 234668999887533 23344455689999999999999998877
Q ss_pred CCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 268 GEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.......+ +++.+-|++.+.|.--.+.-
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 54332222 46777888888776544443
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=9.9e-06 Score=56.96 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=34.1
Q ss_pred CcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccch
Q 003265 490 PSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPE 535 (835)
Q Consensus 490 ~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~ 535 (835)
++|++|++++| .|+.+|..++++. +|++|++++|+|+.+|.
T Consensus 1 ~~L~~L~l~~N----~i~~l~~~l~~l~-~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN----QITDLPPELSNLP-NLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS----S-SSHGGHGTTCT-TSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC----CCcccCchHhCCC-CCCEEEecCCCCCCCcC
Confidence 47899999999 8999998899998 99999999998887753
No 150
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.86 E-value=4.8e-06 Score=83.83 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=101.3
Q ss_pred CceEEEEeeeCCccc-----c-CCCCCCCcceEEEeccCC--cc--cccc------hhhcCCCcceEEEeecCCCCc-cc
Q 003265 444 ENVRRLSLMQNQIET-----L-SEVPKCPHLLTLFLDFNQ--EL--KIAD------GFFQFMPSLKVLKMSYCGQSW-SS 506 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~-----l-~~~~~~~~L~~L~l~~~~--~~--~~~~------~~~~~l~~Lr~L~Ls~~~~~~-~i 506 (835)
..+..+.+++|.+.. + ....+-++|+..+++.-- .. .+|. ..+..+++|++||||+|.+.. .+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 467777777776642 1 112445577777766311 11 2332 234567788888888884210 11
Q ss_pred cccCchHhhhhhcccEEeeccccccccc--------------hhhcCCCCCcEEecccccccCCcch----HHhccCccc
Q 003265 507 FQLPVGMSELGSSLQLFDISLTLIKELP--------------EELKKLVNLKCLNLRWAYRLNKIPR----QLISNYSRL 568 (835)
Q Consensus 507 ~~lp~~i~~l~~~L~~L~L~~~~i~~Lp--------------~~i~~L~~L~~L~L~~~~~l~~lp~----~~i~~L~~L 568 (835)
..+-.-+..+. .|+.|.|.+|.+.... +.+.+-.+|+++....| .+..-+. ..++..+.|
T Consensus 110 ~~l~~ll~s~~-~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 110 RGLEELLSSCT-DLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTL 187 (382)
T ss_pred HHHHHHHHhcc-CHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhcccc
Confidence 11223345555 7888888888665321 22455678999999988 5665543 236677899
Q ss_pred ceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchh
Q 003265 569 CVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 569 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 618 (835)
+++.+..|.+...++ ......+..+++|+.|++..|..+
T Consensus 188 eevr~~qN~I~~eG~-----------~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGV-----------TALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ceEEEecccccCchh-----------HHHHHHHHhCCcceeeecccchhh
Confidence 999999888764222 234566888999999999877654
No 151
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.00014 Score=80.01 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
...+.|+|+.|+|||+|++.+++... . ....+++++. ..+...+...+... . ...+++.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~-~--~~~~v~yi~~------~~f~~~~~~~l~~~-------~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR-E--SGGKILYVRS------ELFTEHLVSAIRSG-------E----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH-H--cCCCEEEeeH------HHHHHHHHHHHhcc-------h----HHHHHHHc
Confidence 35688999999999999999999872 1 2233455543 33444555444311 1 12233333
Q ss_pred cCCcEEEEEcccCCccc----ccccccCCCCCCCCCcEEEEEccch---------hhhhccCCCceEEeccCChHHHHHH
Q 003265 196 RGKRIVLLLDDIWERVD----LTKVGVPLPGPQNTTSKVVFTTRFI---------DVCGSMEADRKFLVACLSEKDAWEL 262 (835)
Q Consensus 196 ~~k~~LlVlDdv~~~~~----~~~l~~~l~~~~~~~s~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~l 262 (835)
+ +.-+|++||+..... .+++...+......|..||+||... .+.+.+.....+.+++++.++...+
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 344888999853211 1222222210111345788887542 2233444456889999999999999
Q ss_pred HHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 263 FREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 263 f~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
+.+.+.......+ +++..-|+..+.|.
T Consensus 280 L~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 280 LERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 9988765443333 35555566666544
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00044 Score=78.64 Aligned_cols=188 Identities=14% Similarity=0.109 Sum_probs=105.1
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.++.... -....+. .+++.-...+.|......
T Consensus 17 ~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~~-------~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPDG-------EPCNECEICKAITNGSLM 88 (559)
T ss_pred hccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC-------CCCCccHHHHHHhcCCCC
Confidence 689999999999999987654 4577899999999999999988762 1110000 011111111111111000
Q ss_pred CC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchhhhhc-
Q 003265 175 VG---DSWKSRSAEEKALDIFRS-----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCGS- 242 (835)
Q Consensus 175 ~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~~- 242 (835)
.- +.......+ .+..+... ..++.-++|+|++... ..+..+...+. .......+|+ ||....+...
T Consensus 89 dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 89 DVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHHH
Confidence 00 000011111 11122222 1345668899999643 34555555554 3333444444 5444443322
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
.+....+...+++.++....+...+.......+ .+.+..|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 233567889999999999988887654432222 356778888898877543
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00027 Score=80.76 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=106.9
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..+..|.+.+..+.+ +.+.++|+.|+||||+|+.+++.... ....+. ..++.-..-..|...-..
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~-------~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA-------EPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC-------CCCCccHHHHHHhcCCCC
Confidence 689999999999999988765 45689999999999999999887621 111100 000000111111100000
Q ss_pred C---CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchhhhhc-
Q 003265 175 V---GDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFIDVCGS- 242 (835)
Q Consensus 175 ~---~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~v~~~- 242 (835)
. .+.......++ ++.+...+ .+++-++|+|++... .....+...+. .....+.+|+ ||....+...
T Consensus 89 d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 89 DVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhHHH
Confidence 0 00000011111 12222222 244558999999643 33455555554 3334455554 5554444322
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc-hHHHHHHH
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP-LALITIGR 301 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~~~ 301 (835)
.+.+..+++.+++.++....+...+.......+ .+....|++.++|.. .|+..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 233567889999999998888876654432222 356778888899865 45444433
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.80 E-value=0.00015 Score=79.11 Aligned_cols=171 Identities=22% Similarity=0.237 Sum_probs=95.3
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.+.++++|.+.+.- ...+.+.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 356888888888776631 234568899999999999999999987 3333 1221111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc----------------ccccccCCCC-CCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD----------------LTKVGVPLPG-PQN 225 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~-~~~ 225 (835)
+ ..... ..........+.....+.+.+|+||+++.... +..+...+.. ...
T Consensus 253 -L----~~k~~-------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 -L----IQKYL-------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -h----hhhhc-------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1 11110 01111122222233356789999999853100 0111111110 123
Q ss_pred CCcEEEEEccchhhh-hcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 226 TTSKVVFTTRFIDVC-GSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 226 ~~s~IivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
.+.+||.||...... ..+ .-...+.+...+.++..++|..++.........++.+ ++..+.|+-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~----la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEE----FIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHH----HHHhcCCCC
Confidence 356788888754432 211 2346789999999999999998775544333333334 444555543
No 155
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.79 E-value=0.00017 Score=73.92 Aligned_cols=165 Identities=17% Similarity=0.185 Sum_probs=104.8
Q ss_pred cccchHHHHHHHHHHhhcCC---ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLEQVWTCLVEES---AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.+.+|+.++..+..++.+.. ...|.|+|..|.|||.+.+++.+.. .. ..+|+++-..++.+.++..|+.+.
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHHHh
Confidence 57899999999999997643 3456899999999999999999987 22 257999999999999999999998
Q ss_pred CCCCCCCCC--C---CHHHHHHHHHH--Hh--cCCcEEEEEcccCCccccccccc----CCCC-CCCCCcEEEEEccc--
Q 003265 173 GLVGDSWKS--R---SAEEKALDIFR--SL--RGKRIVLLLDDIWERVDLTKVGV----PLPG-PQNTTSKVVFTTRF-- 236 (835)
Q Consensus 173 ~~~~~~~~~--~---~~~~~~~~l~~--~l--~~k~~LlVlDdv~~~~~~~~l~~----~l~~-~~~~~s~IivTtR~-- 236 (835)
.....+... . .....+..+.+ .. +++.++||||+++.-.+.+.+.- .+.. ...+ ..+|+++-.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~-~i~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP-TIVIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC-ceEEEEecccc
Confidence 632211111 1 11122223333 12 24689999999975444433210 0110 1122 233333332
Q ss_pred -hhhhhccCCC--ceEEeccCChHHHHHHHHHHh
Q 003265 237 -IDVCGSMEAD--RKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 237 -~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~ 267 (835)
......+++. ..+....-+.+|...++.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1222224443 355678899999999997754
No 156
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0004 Score=68.45 Aligned_cols=175 Identities=19% Similarity=0.182 Sum_probs=101.9
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
.|||.++-++++.=.+.. +..--+.++|++|.||||||.-+++.. ...+. ++......-..-+..|+.
T Consensus 27 efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----ITSGPALEKPGDLAAILT 99 (332)
T ss_pred HhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----ecccccccChhhHHHHHh
Confidence 789999998888666643 456789999999999999999999998 22222 111111000001111111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc---------ccccccccCCCCCCC-----------CCcEE
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER---------VDLTKVGVPLPGPQN-----------TTSKV 230 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~l~~~l~~~~~-----------~~s~I 230 (835)
. |+ ..=++++|.+... ...+++..-+.-..+ +-+-|
T Consensus 100 ~-----------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 100 N-----------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred c-----------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 1 11 2224556666321 011111000000122 23344
Q ss_pred EEEccchhhhhccCC--CceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHh
Q 003265 231 VFTTRFIDVCGSMEA--DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMA 304 (835)
Q Consensus 231 ivTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~ 304 (835)
=-|||.-.+.+.+.. .-..+++-.+.+|-.++..+.+..-+.... ++-+.+|+++..|-|--..-+-+.++
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 568997655444332 346788999999999999998754443333 46788999999999966555544443
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.76 E-value=0.00025 Score=84.98 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=89.9
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccC--CCC-CCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLES--PTN-FDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
+++||+++++++++.|......-+.++|++|+|||++|+.++...... ... -+..+|. + +...++ .
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a-- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A-- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c--
Confidence 689999999999999987666667799999999999999999886211 111 1234442 1 111111 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc---------cccccccCCCCCCCCCcEEEEEccchhhhh-
Q 003265 173 GLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV---------DLTKVGVPLPGPQNTTSKVVFTTRFIDVCG- 241 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~~s~IivTtR~~~v~~- 241 (835)
+.. -..+.++....+.+.+ ..++.+|++|++..-. +...+..+.. ..+ .-++|.+|...+...
T Consensus 249 g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l-~rg-~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL-ARG-ELQCIGATTLDEYRKH 322 (821)
T ss_pred cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH-hCC-CcEEEEeCCHHHHHHH
Confidence 110 1223444444444444 3568999999985311 1112222221 112 245555555444311
Q ss_pred ------ccCCCceEEeccCChHHHHHHHHHH
Q 003265 242 ------SMEADRKFLVACLSEKDAWELFREK 266 (835)
Q Consensus 242 ------~~~~~~~~~l~~L~~~~~~~lf~~~ 266 (835)
.......+.+...+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1123456788889999988887653
No 158
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.75 E-value=0.00019 Score=76.48 Aligned_cols=144 Identities=13% Similarity=0.155 Sum_probs=83.4
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...++.+. .....+ +..+..+..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i-~~~l~~~~~ 93 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFV-RNRLTRFAS 93 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHH-HHHHHHHHH
Confidence 679999999999999887654 566679999999999999999876 222 23444443 121111 111111100
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--c-cccccccCCCCCCCCCcEEEEEccchh-hhhc-cCCCceE
Q 003265 175 VGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--V-DLTKVGVPLPGPQNTTSKVVFTTRFID-VCGS-MEADRKF 249 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~-~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~~-~~~~~~~ 249 (835)
. ..+.+.+-++|+||+... . ....+...+. ....++++|+||.... +... .+....+
T Consensus 94 ~-----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 94 T-----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred h-----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 0 001234568999999643 1 1222322232 3345678888886532 1111 1223467
Q ss_pred EeccCChHHHHHHHHH
Q 003265 250 LVACLSEKDAWELFRE 265 (835)
Q Consensus 250 ~l~~L~~~~~~~lf~~ 265 (835)
.+...+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777888887766543
No 159
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.74 E-value=0.00064 Score=73.66 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=95.5
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.+..+++|.+.+.- ...+.+.++|++|+|||++|+.+++.. ...| +.+..+
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~s------ 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVGS------ 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehH------
Confidence 457888888888776531 245678999999999999999999986 3333 122111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc------------c----ccccccCCCC-CCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV------------D----LTKVGVPLPG-PQN 225 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~-~~~ 225 (835)
.+ ..... ..........+.......+.+|+||+++... . +..+...+.. ...
T Consensus 214 ~l----~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EF----VQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HH----HHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11 11110 0111112222223335678999999985310 0 1111111110 122
Q ss_pred CCcEEEEEccchhhh-hc-c---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 226 TTSKVVFTTRFIDVC-GS-M---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 226 ~~s~IivTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
.+..||.||...... .. . .-...+.+...+.++...+|.............++. .+++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCC
Confidence 456788888754432 11 1 234578899899999888888776544333333333 4455566653
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00028 Score=79.08 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLR 196 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 196 (835)
..+.|+|..|+|||.|++.+++... ....--.+++++. .++..++...+.. .. ...+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 4589999999999999999999872 1111123556643 3444444444321 11 122333333
Q ss_pred CCcEEEEEcccCCc---ccc-cccccCCCCCCCCCcEEEEEccch---------hhhhccCCCceEEeccCChHHHHHHH
Q 003265 197 GKRIVLLLDDIWER---VDL-TKVGVPLPGPQNTTSKVVFTTRFI---------DVCGSMEADRKFLVACLSEKDAWELF 263 (835)
Q Consensus 197 ~k~~LlVlDdv~~~---~~~-~~l~~~l~~~~~~~s~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 263 (835)
+ -=+|||||+... ..| +.+...+......+..||+||... .+.+.+...-.+.+++.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 347899999532 111 122222221123355688888753 23444555678999999999999999
Q ss_pred HHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHH
Q 003265 264 REKVGEETLKSDHDIAELAQIVAKECVGLPLALI 297 (835)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 297 (835)
.+++.......+ ++++.-|++.+.+..-.|.
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHHH
Confidence 998866553333 4667777777766644333
No 161
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=2.8e-05 Score=89.77 Aligned_cols=108 Identities=21% Similarity=0.190 Sum_probs=63.0
Q ss_pred CCcceEEEeccCCcc--cccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCC
Q 003265 465 CPHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVN 542 (835)
Q Consensus 465 ~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~ 542 (835)
-.+|+.|+++|...+ .-+..+...+|.|+.|.+++-.+ ...++..-..+++ +|..||+|+++++.+ .++++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~--~~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF--DNDDFSQLCASFP-NLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee--cchhHHHHhhccC-ccceeecCCCCccCc-HHHhcccc
Confidence 356777777765544 34444455677777777777521 1111222223444 777777777777777 67777777
Q ss_pred CcEEecccccccCCcc--hHHhccCcccceeeecCcCc
Q 003265 543 LKCLNLRWAYRLNKIP--RQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~ 578 (835)
|++|.+++- .+..-+ .+ +-+|++|++||++....
T Consensus 197 Lq~L~mrnL-e~e~~~~l~~-LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 197 LQVLSMRNL-EFESYQDLID-LFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHHhccCC-CCCchhhHHH-HhcccCCCeeecccccc
Confidence 777777654 222211 12 56677777777775544
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.69 E-value=0.00036 Score=83.86 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=89.0
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
+++||+.++.+++..|.......+.++|++|+|||++|+.++.+.. .... ....+|.. ++..+. .
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~~p~~l~~~~~~~l-----~~~~l~----a- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV-NGDVPESLKNKRLLAL-----DMGALI----A- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh-ccCCchhhcCCeEEEe-----eHHHHh----h-
Confidence 6899999999999999876666777999999999999999998862 1111 12233321 111111 0
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEcccCCcc---------cccccccCCCCCCCCCcEEEEEccchhhh
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLR--GKRIVLLLDDIWERV---------DLTKVGVPLPGPQNTTSKVVFTTRFIDVC 240 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~~s~IivTtR~~~v~ 240 (835)
+.. -..+.+.....+...+. +++.+|++|++.... +...+..+.. ..+ .-++|-+|...+..
T Consensus 243 -~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g-~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARG-ELHCIGATTLDEYR 315 (852)
T ss_pred -cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcC-ceEEEEeCcHHHHH
Confidence 000 11223334444444442 468999999986321 1112222222 122 23455444444331
Q ss_pred h-------ccCCCceEEeccCChHHHHHHHHHHh
Q 003265 241 G-------SMEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 241 ~-------~~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
. ...-...+.+...+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11233568899899999999887653
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00071 Score=73.42 Aligned_cols=185 Identities=18% Similarity=0.185 Sum_probs=101.2
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
++=|.++.+.++.+++.. ...+-|.++|++|.|||.||++++++. . +-++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~-----vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---G-----VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---C-----CceEeecch-----
Confidence 445889888888777642 256778899999999999999999998 2 223334332
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--------cc------------ccccccCCCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--------VD------------LTKVGVPLPGP 223 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~------------~~~l~~~l~~~ 223 (835)
+|+..+.. .+...+.+.+.+.-..-++++++|+++-. .+ ++.+.. ...
T Consensus 258 ---eivSGvSG-------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~--~~~ 325 (802)
T KOG0733|consen 258 ---EIVSGVSG-------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN--EKT 325 (802)
T ss_pred ---hhhcccCc-------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc--ccc
Confidence 33333322 22333333344455678999999999631 00 111111 101
Q ss_pred CCCCcEEEE-Eccchhhhhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 224 QNTTSKVVF-TTRFIDVCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 224 ~~~~s~Iiv-TtR~~~v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.+.+.-||- |+|-..+-..+ .-.+.|-+..=++.+-.+++...+.+-.....-++.++|+.--...|---.|+..
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 233333333 55544442222 2245677777777777777766665433333444444444322222222345555
Q ss_pred HHHHHhc
Q 003265 299 IGRAMAY 305 (835)
Q Consensus 299 ~~~~l~~ 305 (835)
.|+..+-
T Consensus 406 ~Aa~vAi 412 (802)
T KOG0733|consen 406 EAAFVAI 412 (802)
T ss_pred HHHHHHH
Confidence 5554443
No 164
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.67 E-value=0.001 Score=73.62 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=89.0
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCeEEEEEecCcc
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESP---TNFDCVIWVVVSKDL 159 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~ 159 (835)
.+.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++.. ... ..+....|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch-
Confidence 456899999888877631 234568999999999999999999987 211 01223445544332
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEcccCCcc---------c-----ccccccCC
Q 003265 160 RLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS-----LRGKRIVLLLDDIWERV---------D-----LTKVGVPL 220 (835)
Q Consensus 160 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~---------~-----~~~l~~~l 220 (835)
++ +.... ...+.....+.+. -.+++.+|+||+++... + ...+...+
T Consensus 261 ---eL----l~kyv--------Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 ---EL----LNKYV--------GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ---hh----ccccc--------chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 11 11100 0111112222221 13578999999996321 1 11222222
Q ss_pred CC-CCCCCcEEEEEccchhhhh-c-c---CCCceEEeccCChHHHHHHHHHHhCC
Q 003265 221 PG-PQNTTSKVVFTTRFIDVCG-S-M---EADRKFLVACLSEKDAWELFREKVGE 269 (835)
Q Consensus 221 ~~-~~~~~s~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~ 269 (835)
.. ....+..||.||....... . . .-...+++...+.++..++|..++..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 21 1113445566665543311 1 1 23456899999999999999988753
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.66 E-value=0.00033 Score=83.83 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=87.6
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCeEE-EEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVI-WVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~-wv~~s~~~~~~~~~~~i~~ 170 (835)
+++||+.++.++++.|......-+.++|++|+|||++|+.++.... .... ....+ ++.++. +. .
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~-~~~vp~~l~~~~~~~l~l~~------l~----a 247 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPEGLKGRRVLALDMGA------LV----A 247 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh-cCCCchhhCCCEEEEEehhh------hh----h
Confidence 7899999999999999887666777999999999999999999862 1111 12222 222221 11 0
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccCCcc---------cccccccCCCCCCCCCcEEEEEccchhh
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIWERV---------DLTKVGVPLPGPQNTTSKVVFTTRFIDV 239 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~---------~~~~l~~~l~~~~~~~s~IivTtR~~~v 239 (835)
... .....+.....+...+ .+.+.+|++|++.... +...+..+.. ..+ .-++|-||...+.
T Consensus 248 g~~------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l-~~g-~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 GAK------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-ARG-ELHCVGATTLDEY 319 (857)
T ss_pred ccc------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh-hcC-CCeEEEcCCCHHH
Confidence 000 1122333344333333 3578999999985321 1122222322 122 3455555544432
Q ss_pred h-------hccCCCceEEeccCChHHHHHHHHHHh
Q 003265 240 C-------GSMEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 240 ~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
. ....-...+.+..-+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 111223456677678899988886544
No 166
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00054 Score=74.54 Aligned_cols=165 Identities=18% Similarity=0.135 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC
Q 003265 99 GLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD 177 (835)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~ 177 (835)
.|..-..++++.+..... ++.|.|+-++||||+++.+.... .+. .+++...+.. +..++ .+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l-~d~--------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIEL-LDL--------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhH-HHH---------
Confidence 344455556665544443 99999999999999997777765 222 5666543321 11111 111
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhh-----hcc-CCCceEEe
Q 003265 178 SWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVC-----GSM-EADRKFLV 251 (835)
Q Consensus 178 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~-----~~~-~~~~~~~l 251 (835)
...+...-..++..++||.|....+|......+. +.++. +|++|+-+.... ... +-...+++
T Consensus 84 ----------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l 151 (398)
T COG1373 84 ----------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLEL 151 (398)
T ss_pred ----------HHHHHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEE
Confidence 1111111122788999999999899988877776 55555 888888875542 211 33567899
Q ss_pred ccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 252 ACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 252 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.|||..|-..+-. +.... ..... .-.=.-..||.|-++..-
T Consensus 152 ~PlSF~Efl~~~~-----~~~~~-~~~~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 152 YPLSFREFLKLKG-----EEIEP-SKLEL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred CCCCHHHHHhhcc-----cccch-hHHHH-HHHHHHHhCCCcHHHhCc
Confidence 9999999876543 00000 01111 222233478888877653
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0013 Score=69.31 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=60.8
Q ss_pred CCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCc
Q 003265 197 GKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVCGS-MEADRKFLVACLSEKDAWELFREKVGEETL 272 (835)
Q Consensus 197 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 272 (835)
+++-++|+|+++.. .....+...+. ....++.+|+||.+. .+... .+-+..+.+.+++.+++.+.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC-
Confidence 34445678999753 44555555554 344566777776664 33322 23357899999999999999987642111
Q ss_pred CCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 273 KSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 273 ~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.+.+..++..++|.|..+..+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 234567788999999766554
No 168
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00089 Score=68.33 Aligned_cols=179 Identities=22% Similarity=0.261 Sum_probs=107.5
Q ss_pred cchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHH
Q 003265 98 VGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKL 164 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 164 (835)
=|-++++++|.+.+.- +..+-|.++|++|.|||-||++|+++. ...| +.+...
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS------ 219 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS------ 219 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH------
Confidence 3788889888887641 466788999999999999999999987 4444 333322
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEcccCCc----------c------cccccccCCCC-CCCC
Q 003265 165 QEDIGKKIGLVGDSWKSRSAEEKALDIFRSLR-GKRIVLLLDDIWER----------V------DLTKVGVPLPG-PQNT 226 (835)
Q Consensus 165 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~------~~~~l~~~l~~-~~~~ 226 (835)
++.+..-. +...+...+.+.-+ ..+.+|++|.++.- . .+-++...+.. +...
T Consensus 220 --ElVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 --ELVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred --HHHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 22222211 12345555555554 46899999998631 0 01222222221 2334
Q ss_pred CcEEEEEccchhhhh-----ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc----hHHH
Q 003265 227 TSKVVFTTRFIDVCG-----SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP----LALI 297 (835)
Q Consensus 227 ~s~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP----lai~ 297 (835)
..|||..|...++.. .-.-++.+++..=+.+.-.++|.-+........+-+++.++ +.|.|.- .|+.
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la----~~~~g~sGAdlkaic 365 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA----RLTEGFSGADLKAIC 365 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHH----HhcCCCchHHHHHHH
Confidence 578998887665432 12235678888555666667777777665545555555544 4466654 3344
Q ss_pred HHHHHHh
Q 003265 298 TIGRAMA 304 (835)
Q Consensus 298 ~~~~~l~ 304 (835)
+=|+.++
T Consensus 366 tEAGm~A 372 (406)
T COG1222 366 TEAGMFA 372 (406)
T ss_pred HHHhHHH
Confidence 4455543
No 169
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=4.3e-06 Score=91.55 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=122.4
Q ss_pred ccccCCceEEEEeeeCCccccCCC-CCCCcceEEEeccCCcc---cccch---hhcC---CCcceEEEeecCCCCccccc
Q 003265 439 DVKRWENVRRLSLMQNQIETLSEV-PKCPHLLTLFLDFNQEL---KIADG---FFQF---MPSLKVLKMSYCGQSWSSFQ 508 (835)
Q Consensus 439 ~~~~~~~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~---~~~~~---~~~~---l~~Lr~L~Ls~~~~~~~i~~ 508 (835)
++..++.+|+|.+.+.++..+... .--.+|+.|... +... .+... -+++ ...|.+.+.++| .+..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN----~L~~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYN----RLVL 178 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchh----hHHh
Confidence 445567899999988777654333 222345555554 2211 11000 0111 235777888899 8888
Q ss_pred cCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcc
Q 003265 509 LPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDS 588 (835)
Q Consensus 509 lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 588 (835)
+..++.-+. .|+.|||++|+++..- .+..|.+|+||||++| .+..+|.-....+. |+.|.+.+|...
T Consensus 179 mD~SLqll~-ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~--------- 245 (1096)
T KOG1859|consen 179 MDESLQLLP-ALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALT--------- 245 (1096)
T ss_pred HHHHHHHHH-HhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHH---------
Confidence 888888887 9999999999998875 7889999999999999 78888862223334 999999988766
Q ss_pred cccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCC
Q 003265 589 VLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAG 642 (835)
Q Consensus 589 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 642 (835)
.+..+.+|.+|+.|+++.|-.....++.... .+..|+.|.|.+|.
T Consensus 246 --------tL~gie~LksL~~LDlsyNll~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 246 --------TLRGIENLKSLYGLDLSYNLLSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred --------hhhhHHhhhhhhccchhHhhhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 3667888999999999987665544443222 23578888888764
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.59 E-value=0.00034 Score=81.74 Aligned_cols=155 Identities=18% Similarity=0.275 Sum_probs=90.7
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCC---CCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTN---FDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
+++||+++++++++.|......-+.++|++|+|||++|+.++......... .++.+|.. +.. .++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~----~lla-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG----SLLA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH----HHhc--
Confidence 689999999999999987655566789999999999999999875211111 23444421 111 1111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCc----------ccccccccCCCCCCCCCcEEEEEccchhhhh
Q 003265 173 GLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWER----------VDLTKVGVPLPGPQNTTSKVVFTTRFIDVCG 241 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~ 241 (835)
+.. -..+.+.....+...+ +.++.+|++|++... .+...+..++. .. ..-+||-+|...++..
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~~-g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SS-GKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-hC-CCeEEEecCChHHHHH
Confidence 000 1123344444444444 356789999999532 11222222322 11 2244555554433211
Q ss_pred -------ccCCCceEEeccCChHHHHHHHHHHh
Q 003265 242 -------SMEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 242 -------~~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
...-...+.++..+.++...++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11223579999999999999998654
No 171
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=1.2e-05 Score=69.80 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=70.9
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVN 542 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~ 542 (835)
....+|...++++|...++|..+-..++.+..|+|++| .|.++|..+..++ .|+.|+++.|.+...|.-+..|.+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n----eisdvPeE~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN----EISDVPEELAAMP-ALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh----hhhhchHHHhhhH-HhhhcccccCccccchHHHHHHHh
Confidence 55667777888855444777776677778888888888 7888888888887 888888888888888888888888
Q ss_pred CcEEecccccccCCcchH
Q 003265 543 LKCLNLRWAYRLNKIPRQ 560 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~ 560 (835)
|-.|+..++ ....+|..
T Consensus 125 l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 125 LDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred HHHhcCCCC-ccccCcHH
Confidence 888888777 55666654
No 172
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.0005 Score=73.23 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
....+.|+|..|.|||.|++++.+.. .........+.++ .......++..+.. .....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~----se~f~~~~v~a~~~-----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT----SEDFTNDFVKALRD-----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc----HHHHHHHHHHHHHh-----------hhHHHHHHh
Confidence 46789999999999999999999987 3444422233332 23344444443321 123344444
Q ss_pred hcCCcEEEEEcccCCcc---c-ccccccCCCCCCCCCcEEEEEccchh---------hhhccCCCceEEeccCChHHHHH
Q 003265 195 LRGKRIVLLLDDIWERV---D-LTKVGVPLPGPQNTTSKVVFTTRFID---------VCGSMEADRKFLVACLSEKDAWE 261 (835)
Q Consensus 195 l~~k~~LlVlDdv~~~~---~-~~~l~~~l~~~~~~~s~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~ 261 (835)
. .-=++++||++--. . -+++...|..-...|..||+|++... +.+.+...-.+.+++.+.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 4 33489999995321 1 12222222212233448999997532 34555666789999999999999
Q ss_pred HHHHHhCCCCcCCC
Q 003265 262 LFREKVGEETLKSD 275 (835)
Q Consensus 262 lf~~~~~~~~~~~~ 275 (835)
++.+.+.......+
T Consensus 252 iL~kka~~~~~~i~ 265 (408)
T COG0593 252 ILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHhcCCCCC
Confidence 99998766554444
No 173
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.004 Score=60.89 Aligned_cols=179 Identities=16% Similarity=0.204 Sum_probs=104.0
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEec-CccCHHHHHHHHHHHhCCCCCCCCCCCHHHH----
Q 003265 113 EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKLQEDIGKKIGLVGDSWKSRSAEEK---- 187 (835)
Q Consensus 113 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---- 187 (835)
.++-+++.++|.-|.|||.+++...... . +. +... |.+. +..+...+...|+..+..+ +.......
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~d-~~~~-v~i~~~~~s~~~~~~ai~~~l~~~----p~~~~~~~~e~~ 118 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL-N--ED-QVAV-VVIDKPTLSDATLLEAIVADLESQ----PKVNVNAVLEQI 118 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-C--CC-ceEE-EEecCcchhHHHHHHHHHHHhccC----ccchhHHHHHHH
Confidence 3555799999999999999999666555 1 11 1122 3333 3456778888888888763 22333333
Q ss_pred HHHHHHHh-cCCc-EEEEEcccCCc--ccccccccC---CCCCCCCCcEEEEEccc--------hhhhhccCCCce-EEe
Q 003265 188 ALDIFRSL-RGKR-IVLLLDDIWER--VDLTKVGVP---LPGPQNTTSKVVFTTRF--------IDVCGSMEADRK-FLV 251 (835)
Q Consensus 188 ~~~l~~~l-~~k~-~LlVlDdv~~~--~~~~~l~~~---l~~~~~~~s~IivTtR~--------~~v~~~~~~~~~-~~l 251 (835)
...+.+.. ++++ ..+++||.... ..++.++.. -....+. -+|+..-.. ......-.-... |.+
T Consensus 119 ~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~-l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l 197 (269)
T COG3267 119 DRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKL-LSIVLIGQPKLRPRLRLPVLRELEQRIDIRIEL 197 (269)
T ss_pred HHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCc-eeeeecCCcccchhhchHHHHhhhheEEEEEec
Confidence 33344433 5677 99999998532 222222111 1101122 123322211 111111111223 899
Q ss_pred ccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHH
Q 003265 252 ACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGR 301 (835)
Q Consensus 252 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 301 (835)
.|++.++...++..++.......+-.-.+....|.....|.|.+|..++.
T Consensus 198 ~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 198 PPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999999999988876544222222346677888899999999988763
No 174
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.54 E-value=3.9e-05 Score=88.60 Aligned_cols=128 Identities=18% Similarity=0.186 Sum_probs=91.8
Q ss_pred CceEEEEeeeCCccccC----CCCCCCcceEEEeccCCcc--cccchhhcCCCcceEEEeecCCCCccccccCchHhhhh
Q 003265 444 ENVRRLSLMQNQIETLS----EVPKCPHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELG 517 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~ 517 (835)
.++++|++.+...-.-. -..-+|.|++|.+.+ ..+ +--.....++++|+.||+|++ +++.+ .+++.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T----nI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT----NISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC----CccCc-HHHhccc
Confidence 38888888774332110 126799999999994 333 112234678999999999999 88888 7899999
Q ss_pred hcccEEeeccccccccc--hhhcCCCCCcEEecccccccCCcchH------HhccCcccceeeecCcCcc
Q 003265 518 SSLQLFDISLTLIKELP--EELKKLVNLKCLNLRWAYRLNKIPRQ------LISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 518 ~~L~~L~L~~~~i~~Lp--~~i~~L~~L~~L~L~~~~~l~~lp~~------~i~~L~~L~~L~l~~~~~~ 579 (835)
+|+.|.+++-.+..-. ..+.+|++|++||+|...... -+.- .-..|++|+.|+.+++.+.
T Consensus 196 -nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 -NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -cHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999999887666432 467889999999999874322 2211 0134888999999877665
No 175
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00011 Score=68.62 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccch--hhcCCC
Q 003265 464 KCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPE--ELKKLV 541 (835)
Q Consensus 464 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~--~i~~L~ 541 (835)
-..+...++|++|....++. |..++.|..|.|.+| .|+.+.+.+..+.|+|..|.|.+|+|.+|.+ -+..++
T Consensus 40 ~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN----rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN----RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred cccccceecccccchhhccc--CCCccccceEEecCC----cceeeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 34456677777554434444 777888888888888 7888877887777678888888887776632 344566
Q ss_pred CCcEEecccccccCCcc---hHHhccCcccceeeecCcC
Q 003265 542 NLKCLNLRWAYRLNKIP---RQLISNYSRLCVLRMFGTG 577 (835)
Q Consensus 542 ~L~~L~L~~~~~l~~lp---~~~i~~L~~L~~L~l~~~~ 577 (835)
+|++|.+-+|+ +..-+ .-++.++++|+.|+..+..
T Consensus 114 ~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 114 KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 77777777763 22221 1235666777777766543
No 176
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.51 E-value=0.0018 Score=73.29 Aligned_cols=177 Identities=19% Similarity=0.181 Sum_probs=95.1
Q ss_pred cccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.++... ...| +.++.. +
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~~----~ 123 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGS----D 123 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccHH----H
Confidence 56788877666554432 1 223468899999999999999999876 2222 222211 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc----c--------c----cccccCCCC-CCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV----D--------L----TKVGVPLPG-PQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~--------~----~~l~~~l~~-~~~~ 226 (835)
+.. ... ..........+.......+.+|+|||++... . . ..+...+.. ....
T Consensus 124 ~~~----~~~-------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 124 FVE----MFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHh-------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 110 0111222223333345678999999995321 0 0 111111110 1223
Q ss_pred CcEEEEEccchh-hhh----ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHH
Q 003265 227 TSKVVFTTRFID-VCG----SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITI 299 (835)
Q Consensus 227 ~s~IivTtR~~~-v~~----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 299 (835)
+..||.||.... +.. ...-...+.+...+.++-.++|...+......... ....+++.+.|. +-.|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCCCHHHHHHH
Confidence 455666776543 211 11234678899889988899998877544322222 234677778774 3334433
No 177
>PRK08116 hypothetical protein; Validated
Probab=97.50 E-value=0.00014 Score=74.49 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=58.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLR 196 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 196 (835)
..+.++|..|+|||+||.++++... .....+++++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4588999999999999999999972 2223456664 3445555555443211 111 222334444
Q ss_pred CCcEEEEEcccCC--cccccc--cccCCCCCCCCCcEEEEEccc
Q 003265 197 GKRIVLLLDDIWE--RVDLTK--VGVPLPGPQNTTSKVVFTTRF 236 (835)
Q Consensus 197 ~k~~LlVlDdv~~--~~~~~~--l~~~l~~~~~~~s~IivTtR~ 236 (835)
+-. ||||||+.. ..+|.. +...+...-..+..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999942 233322 222222112245568999875
No 178
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.45 E-value=3.9e-05 Score=87.37 Aligned_cols=86 Identities=24% Similarity=0.160 Sum_probs=37.9
Q ss_pred CCCcceEEEeecCCCCccccc--cCchHhhhhhcccEEeeccc--ccccc----chhhcCCCCCcEEecccccccCCcch
Q 003265 488 FMPSLKVLKMSYCGQSWSSFQ--LPVGMSELGSSLQLFDISLT--LIKEL----PEELKKLVNLKCLNLRWAYRLNKIPR 559 (835)
Q Consensus 488 ~l~~Lr~L~Ls~~~~~~~i~~--lp~~i~~l~~~L~~L~L~~~--~i~~L----p~~i~~L~~L~~L~L~~~~~l~~lp~ 559 (835)
.++.|+.|.+..+. .+.. +-....... +|+.|+++++ .+... +.....+++|+.|++++|..+...--
T Consensus 186 ~~~~L~~l~l~~~~---~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCS---KITDDSLDALALKCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccc---cCChhhHHHHHhhCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 35555555555553 3333 222233333 5666665542 11111 11233345666666666643332221
Q ss_pred HHh-ccCcccceeeecCcC
Q 003265 560 QLI-SNYSRLCVLRMFGTG 577 (835)
Q Consensus 560 ~~i-~~L~~L~~L~l~~~~ 577 (835)
..+ ..+++|++|.+.+|.
T Consensus 262 ~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCS 280 (482)
T ss_pred HHHHhhCCCcceEccCCCC
Confidence 112 225566666655554
No 179
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=2.4e-05 Score=68.06 Aligned_cols=107 Identities=25% Similarity=0.240 Sum_probs=82.6
Q ss_pred ceEEEeccCCcccccc--hhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcE
Q 003265 468 LLTLFLDFNQELKIAD--GFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKC 545 (835)
Q Consensus 468 L~~L~l~~~~~~~~~~--~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~ 545 (835)
+..++|+.|....+++ ..+....+|...+|++| .+..+|..+....+.+..|+|++|.|..+|..+..++.|+.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N----~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN----GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc----hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 3445555454332322 22566678888999999 88999988876656899999999999999999999999999
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCccC
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
|+++.| .+...|.- |-.|.+|-.|+..++.+..
T Consensus 105 lNl~~N-~l~~~p~v-i~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 105 LNLRFN-PLNAEPRV-IAPLIKLDMLDSPENARAE 137 (177)
T ss_pred cccccC-ccccchHH-HHHHHhHHHhcCCCCcccc
Confidence 999999 67788875 6678888888888776654
No 180
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0041 Score=65.07 Aligned_cols=181 Identities=12% Similarity=0.068 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCe-----EEEEEecCccCHHHHHHHHHHHhCCC
Q 003265 102 SQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-----VIWVVVSKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 102 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~~ 175 (835)
...+.+...+..+.++ .+.++|+.|+||+++|..++...-. .....+ .-|+.....+|+..+. ..+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIP 82 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cCC
Confidence 4456677777666554 6889999999999999998877621 110110 0000001111100000 000
Q ss_pred CCCCC---CCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccc-hhhhhc-c
Q 003265 176 GDSWK---SRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRF-IDVCGS-M 243 (835)
Q Consensus 176 ~~~~~---~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~~-~ 243 (835)
..... ..-..+.++.+.+.+ .+++-++|+|+++.. ..-..+...+. ....++.+|++|.+ ..+... .
T Consensus 83 ~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 83 NRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECChhhCchHHH
Confidence 00000 000112223333333 245669999999653 33444444444 34456666666654 344322 2
Q ss_pred CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 244 EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 244 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
+-+..+.+.+++.+++.+.+.+. +. + .+.+..++..++|.|+.+..+.
T Consensus 162 SRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 34678899999999999888753 21 1 1235677899999998765543
No 181
>CHL00176 ftsH cell division protein; Validated
Probab=97.41 E-value=0.0036 Score=71.99 Aligned_cols=170 Identities=17% Similarity=0.249 Sum_probs=95.5
Q ss_pred cccchHHHHHHHHHH---hhc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTC---LVE---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~---L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
+++|.++.++++.+. +.. ...+-|.++|++|+|||+||+.++... ... |+.++.. +
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s----~ 251 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS----E 251 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----H
Confidence 567887766665444 332 123568999999999999999999876 222 2322211 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc------------c----ccccccCCCC-CCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV------------D----LTKVGVPLPG-PQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~-~~~~ 226 (835)
+.... .+ .........+.+.....+.+|+|||++... . +..+...+.. ....
T Consensus 252 f~~~~---~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 252 FVEMF---VG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHh---hh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11100 00 011222233444456788999999995321 0 1122222210 1234
Q ss_pred CcEEEEEccchhhhh-cc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 227 TSKVVFTTRFIDVCG-SM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 227 ~s~IivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
+..||.||....... .+ .-...+.+...+.++-.+++..++....... ......+++.+.|.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCCC
Confidence 556777776644321 11 2346788999999999999988876533111 23456677778773
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.006 Score=63.94 Aligned_cols=177 Identities=10% Similarity=0.071 Sum_probs=97.2
Q ss_pred HHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhC-----CCC
Q 003265 103 QLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIG-----LVG 176 (835)
Q Consensus 103 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~~ 176 (835)
..+.+.+.+..+.+ ..+.+.|+.|+||+++|+.++...-.. ..... ..++.-..-+.+...-. ...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~-~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ-TPQGD-------QPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC-CCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 34556666766554 577799999999999999998876211 11100 00000011111110000 000
Q ss_pred CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhhhc-cCCCc
Q 003265 177 DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVCGS-MEADR 247 (835)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~~~-~~~~~ 247 (835)
........++ ++.+.+.+ .+++=++|+|+++.. .....+...+. ....++.+|++|.+. .+... .+-+.
T Consensus 82 ~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhhce
Confidence 0001112222 22333333 355668889999754 34555555555 445566666666653 44322 23467
Q ss_pred eEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHH
Q 003265 248 KFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALI 297 (835)
Q Consensus 248 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 297 (835)
.+.+.+++++++.+.+.+..... ...+...+..++|.|+.+.
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLAL 201 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHHH
Confidence 89999999999999888764221 1235566788999996443
No 183
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.40 E-value=0.00064 Score=77.35 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.++++..++.. ...+++.|+|++|+||||+++.++...
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999988875 234679999999999999999999876
No 184
>PRK08118 topology modulation protein; Reviewed
Probab=97.38 E-value=0.00013 Score=69.19 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEE
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIW 152 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 152 (835)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999997222256777776
No 185
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.37 E-value=0.0012 Score=69.52 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=65.5
Q ss_pred HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCe-EEEEEecCc-cCHHHHHHHHHHHhCCCCCCCC
Q 003265 104 LEQVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKD-LRLEKLQEDIGKKIGLVGDSWK 180 (835)
Q Consensus 104 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~ 180 (835)
..++++.+.. +.-.-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. .++.++++.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3457777764 3445678999999999999999998772 223344 466666554 4788999999887765431111
Q ss_pred CCC---HHHHHHHHHHHh--cCCcEEEEEcccC
Q 003265 181 SRS---AEEKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 181 ~~~---~~~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
... .......+.+.+ ++++++||+|++.
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 111 111112222222 6899999999983
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0041 Score=66.15 Aligned_cols=161 Identities=8% Similarity=0.032 Sum_probs=87.0
Q ss_pred cccc-hHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 96 KVVG-LQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vG-r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
.++| .+..++.+.+.+..+.+ +...++|+.|+||||+|+.+++.... ........ +.. -..-+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~~---cg~----C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVEP---CGT----CTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCCC---CCc----CHHHHHHhcCCC
Confidence 4567 77777888888877655 46689999999999999999887521 11011000 000 000000000000
Q ss_pred ----CCCCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhhh
Q 003265 174 ----LVGDSWKSRSAEEKALDIFRS-----LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVCG 241 (835)
Q Consensus 174 ----~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~~ 241 (835)
.-..+......++.. .+.+. ..+.+=++|+|++... .....+...+. ....++.+|++|.+. .+..
T Consensus 78 pD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCceEEEEeCChHhCcH
Confidence 000000111122222 22222 2345568999998643 33445555554 445567677666543 3332
Q ss_pred c-cCCCceEEeccCChHHHHHHHHHH
Q 003265 242 S-MEADRKFLVACLSEKDAWELFREK 266 (835)
Q Consensus 242 ~-~~~~~~~~l~~L~~~~~~~lf~~~ 266 (835)
. .+-...+++.+++.++..+.+.+.
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2 234678999999999998888653
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.35 E-value=0.00076 Score=62.08 Aligned_cols=88 Identities=25% Similarity=0.099 Sum_probs=49.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
...+.|+|++|+||||+|+.++... ......++++..+........... ....... ............+.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 222234566655444322222111 0011110 12223333344444444
Q ss_pred cCC-cEEEEEcccCCc
Q 003265 196 RGK-RIVLLLDDIWER 210 (835)
Q Consensus 196 ~~k-~~LlVlDdv~~~ 210 (835)
... ..++++|++...
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 443 499999999754
No 188
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.35 E-value=0.014 Score=62.18 Aligned_cols=199 Identities=17% Similarity=0.201 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCeEEEEEecCcc---CHHHHHHHHHHHhCCC
Q 003265 100 LQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCVIWVVVSKDL---RLEKLQEDIGKKIGLV 175 (835)
Q Consensus 100 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~~i~~~l~~~ 175 (835)
|.+..++|..||.+..-..|.|.||-|.||+.|+ .++..+. +.++.+.|.+-. +-..++..+++++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988889999999999999999 6666654 126666654432 2345555666655421
Q ss_pred -----------------------CCCCCCCCHHHHHHHHHH---Hhc--------------------------CCcEEEE
Q 003265 176 -----------------------GDSWKSRSAEEKALDIFR---SLR--------------------------GKRIVLL 203 (835)
Q Consensus 176 -----------------------~~~~~~~~~~~~~~~l~~---~l~--------------------------~k~~LlV 203 (835)
.....+....++...+.. .|+ .++=+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 111122222222222111 111 1256899
Q ss_pred EcccCCc-----------ccccccccCCCCCCCCCcEEEEEccchhhhh----cc--CCCceEEeccCChHHHHHHHHHH
Q 003265 204 LDDIWER-----------VDLTKVGVPLPGPQNTTSKVVFTTRFIDVCG----SM--EADRKFLVACLSEKDAWELFREK 266 (835)
Q Consensus 204 lDdv~~~-----------~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~----~~--~~~~~~~l~~L~~~~~~~lf~~~ 266 (835)
+|++-.. .+|... + ...+-.+||+.|-+..... .+ ...+.+.|...+++.|.++...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---L--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---H--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998432 234332 2 1334568999888765433 33 23567889999999999999998
Q ss_pred hCCCCcC------------CC-----hhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHH
Q 003265 267 VGEETLK------------SD-----HDIAELAQIVAKECVGLPLALITIGRAMAYRKKAE 310 (835)
Q Consensus 267 ~~~~~~~------------~~-----~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~ 310 (835)
+...... .. ....+-....++..||==.-+..+++.++...++.
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 8654100 00 12233445567788999999999999988764443
No 189
>PRK12377 putative replication protein; Provisional
Probab=97.31 E-value=0.00069 Score=68.16 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=45.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
....+.++|.+|+|||+||.++++... .....++++++. ++...+-..... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999982 223345666543 444444433311 11111 12222
Q ss_pred hcCCcEEEEEcccC
Q 003265 195 LRGKRIVLLLDDIW 208 (835)
Q Consensus 195 l~~k~~LlVlDdv~ 208 (835)
+ .+-=||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 2 355699999994
No 190
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.29 E-value=0.011 Score=65.83 Aligned_cols=201 Identities=14% Similarity=0.085 Sum_probs=125.0
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcc-----cCCCCCCeEEEEEecCccCHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFL-----ESPTNFDCVIWVVVSKDLRLEKLQ 165 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~~~f~~~~wv~~s~~~~~~~~~ 165 (835)
.+-+|+.+..+|-+.+.. +..+.+-|.|.+|+|||..+..|.+... .....|+ .+.|+.-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 356899999998887753 3445899999999999999999988651 1123454 3455555556789999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCccc--ccccccCCCCCCCCCcEEEEEccch-
Q 003265 166 EDIGKKIGLVGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWERVD--LTKVGVPLPGPQNTTSKVVFTTRFI- 237 (835)
Q Consensus 166 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~--~~~l~~~l~~~~~~~s~IivTtR~~- 237 (835)
..|..++.... .........+.... ..+..+|++|+++.... -+-+...|.+...++|+++|-+=..
T Consensus 476 ~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 476 EKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 99999997643 34444455555444 23568999999853211 1112222222244567666543211
Q ss_pred ----------hhhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHH
Q 003265 238 ----------DVCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAM 303 (835)
Q Consensus 238 ----------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 303 (835)
.|+..++ ...+..+|.+.++-.++...++.+...-.....+=++++|+.-.|..-.|+.+.-++.
T Consensus 551 mdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred ccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 1222222 3467888999999999988877554322223334456667766666666666665544
No 191
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.27 E-value=0.0025 Score=64.48 Aligned_cols=167 Identities=18% Similarity=0.230 Sum_probs=99.9
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-----CHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-----RLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-----~~~~~~~ 166 (835)
.++|..++..++-+++.+ ++..-|.|+|+.|.|||+|...+..+..+..++| +-|...... .+..+.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHH
Confidence 689999999999888875 5666788999999999999988777641223333 333333322 2334444
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC------CcEEEEEcccCCcc------cccccccCCCCCCCCCcEEEEEc
Q 003265 167 DIGKKIGLVGDSWKSRSAEEKALDIFRSLRG------KRIVLLLDDIWERV------DLTKVGVPLPGPQNTTSKVVFTT 234 (835)
Q Consensus 167 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~------~~~~l~~~l~~~~~~~s~IivTt 234 (835)
++..++.... ....+..+....+.+.|+. -+++.|+|+++-.. -+-.+...-.....+-+.|-+||
T Consensus 102 ql~~e~~~~~--k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 102 QLALELNRIV--KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHhhhh--eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 4444433221 1334455556666666632 35788888875321 11112111111345667778999
Q ss_pred cchh-------hhhccCCCceEEeccCChHHHHHHHHHHh
Q 003265 235 RFID-------VCGSMEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 235 R~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
|-.- |-+...-...+.++.++-++..+++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9643 33333333456667788888888888766
No 192
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.01 Score=63.59 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=88.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH---
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDI--- 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l--- 191 (835)
....+.+.|++|+|||+||..++.. ..|..+--++..+- ...+.......+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m---------------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM---------------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc---------------------cCccHHHHHHHHHHH
Confidence 4567889999999999999999875 46665443321111 111222223333
Q ss_pred -HHHhcCCcEEEEEcccCCcccccccccCC------------CCCCCCCcE--EEEEccchhhhhccCC----CceEEec
Q 003265 192 -FRSLRGKRIVLLLDDIWERVDLTKVGVPL------------PGPQNTTSK--VVFTTRFIDVCGSMEA----DRKFLVA 252 (835)
Q Consensus 192 -~~~l~~k~~LlVlDdv~~~~~~~~l~~~l------------~~~~~~~s~--IivTtR~~~v~~~~~~----~~~~~l~ 252 (835)
...-+..=-.||+||+....+|..++..+ .....+|-| |+-||....+...|+. ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 33445566799999997766665544332 212334444 4447777888777754 3578888
Q ss_pred cCCh-HHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHc
Q 003265 253 CLSE-KDAWELFREKVGEETLKSDHDIAELAQIVAKEC 289 (835)
Q Consensus 253 ~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c 289 (835)
.++. ++..+.++..-- -.+.+...++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 8887 777777766431 12334455666666665
No 193
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00041 Score=64.91 Aligned_cols=102 Identities=24% Similarity=0.350 Sum_probs=84.2
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC--chHhhhhhcccE
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP--VGMSELGSSLQL 522 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp--~~i~~l~~~L~~ 522 (835)
..-.+++++|++..++.++.++.|.+|.+.+|....+.+..-.-+++|..|.|.+| +|.++- ..+..++ .|++
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN----si~~l~dl~pLa~~p-~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN----SIQELGDLDPLASCP-KLEY 117 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc----chhhhhhcchhccCC-ccce
Confidence 56678899999999999999999999999966666888876677889999999999 776652 2455676 9999
Q ss_pred Eeeccccccccch----hhcCCCCCcEEecccc
Q 003265 523 FDISLTLIKELPE----ELKKLVNLKCLNLRWA 551 (835)
Q Consensus 523 L~L~~~~i~~Lp~----~i~~L~~L~~L~L~~~ 551 (835)
|.+-+|.++..+. -+..+++|++||.++-
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 9999998887643 4678999999999764
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.23 E-value=0.0031 Score=59.43 Aligned_cols=135 Identities=19% Similarity=0.142 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHhhcCCce-EEEEEcCCCCcHHHHHHHHHhhcccCCC-----------------CCCeEEEEEecCccC
Q 003265 99 GLQSQLEQVWTCLVEESAG-IIGLYGMGGVGKTTLLTHINNKFLESPT-----------------NFDCVIWVVVSKDLR 160 (835)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~s~~~~ 160 (835)
|.++..+.+.+.+..+..+ .+.++|+.|+||+++|..++........ ......|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 5667778888888776654 6899999999999999999887621111 11223333222110
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEE
Q 003265 161 LEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFT 233 (835)
Q Consensus 161 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivT 233 (835)
.....++.. .+...+ .++.=++|+||++.. .....+...+. .....+++|++
T Consensus 80 -------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~ 138 (162)
T PF13177_consen 80 -------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILI 138 (162)
T ss_dssp -------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEE
T ss_pred -------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEE
Confidence 011222222 333333 245669999999753 44555555554 45567888888
Q ss_pred ccchh-hh-hccCCCceEEeccCC
Q 003265 234 TRFID-VC-GSMEADRKFLVACLS 255 (835)
Q Consensus 234 tR~~~-v~-~~~~~~~~~~l~~L~ 255 (835)
|++.. +. ...+-...+.+.++|
T Consensus 139 t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 139 TNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp ES-GGGS-HHHHTTSEEEEE----
T ss_pred ECChHHChHHHHhhceEEecCCCC
Confidence 87654 32 222335667777654
No 195
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00077 Score=61.25 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 196
>PRK10536 hypothetical protein; Provisional
Probab=97.20 E-value=0.0024 Score=63.53 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEE
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVI 151 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~ 151 (835)
.+.++......++.++.+. .+|.+.|++|+|||+||.+++.+. -..+.|+.++
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIi 108 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRII 108 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEE
Confidence 4567888888888888664 499999999999999999988864 1124455433
No 197
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0019 Score=71.10 Aligned_cols=185 Identities=14% Similarity=0.162 Sum_probs=111.6
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.+||.+.-+..|...+..+.. .-....|+-|+||||+|+.++...-.. .. ....++..-..-+.|...-..
T Consensus 17 evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~-~~-------~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE-NG-------PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC-CC-------CCCCcchhhhhhHhhhcCCcc
Confidence 579999999999999887653 456788999999999999998876111 10 111122222222333222000
Q ss_pred CC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccC--CcccccccccCCCCCCCCCcEEEEEccc-hhhh-hc
Q 003265 175 VG---DSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIW--ERVDLTKVGVPLPGPQNTTSKVVFTTRF-IDVC-GS 242 (835)
Q Consensus 175 ~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~-~~ 242 (835)
.- +....... +-++.|.+.. +++-=+.|+|+|. +...|..+...+. ........|+.|.+ +.+. ..
T Consensus 89 DviEiDaASn~gV-ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 89 DVIEIDAASNTGV-DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred cchhhhhhhccCh-HHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCchhh
Confidence 00 00011111 2223333332 3455599999995 3466777777765 44455565655554 4442 23
Q ss_pred cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 243 MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 243 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
.+.++.|.+..++.++-...+...+..+.+..+ .+....|++..+|..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 345688999999999999999988877664443 355666777777754
No 198
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.012 Score=62.43 Aligned_cols=178 Identities=13% Similarity=0.093 Sum_probs=98.1
Q ss_pred HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCC-CC-CCeE-----EEEEecCccCHHHHHHHHHHHhCC
Q 003265 103 QLEQVWTCLVEES-AGIIGLYGMGGVGKTTLLTHINNKFLESP-TN-FDCV-----IWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 103 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~-f~~~-----~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.-+++.+.+.++. ...+.+.|+.|+||+++|..++....-.. .. -.|. -++.....+|+..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 4456777776655 45778999999999999999887762110 00 0000 00001111111100 00
Q ss_pred CCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccc-hhhhhc-cCC
Q 003265 175 VGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRF-IDVCGS-MEA 245 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~~-~~~ 245 (835)
.........++ ++.+.+.+ .+++=++|+|+++.. .....+...+. ....++.+|++|.+ ..+... .+-
T Consensus 82 -~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 82 -EKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred -ccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 00000112222 22233333 356669999998653 34555555554 44556666666665 334322 234
Q ss_pred CceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 246 DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 246 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+..+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|.....+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 567899999999999888664321 1 233667888999999654433
No 199
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.012 Score=61.40 Aligned_cols=177 Identities=12% Similarity=0.028 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhC------C
Q 003265 102 SQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIG------L 174 (835)
Q Consensus 102 ~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~------~ 174 (835)
...+.+.+.+..+.+ ..+.+.|+.|+||+++|+.++...--...... .+... ..-+.+...-. .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----ACGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCC----HHHHHHHcCCCCCEEEEe
Confidence 344566666666554 57889999999999999999877521110000 00000 00111100000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccc-hhhhh-ccCC
Q 003265 175 VGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRF-IDVCG-SMEA 245 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~-~~~~ 245 (835)
+.........++. +.+.+.+ .+.+=++|+|++... .....+...+. ....++.+|++|.+ ..+.. ..+-
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 0000011122222 2233333 244558999999653 44555555554 44556666665554 44433 2344
Q ss_pred CceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 246 DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 246 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
+..+.+.+++.+++.+.+.+.. .+ .+..+++.++|.|+.+..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHHh
Confidence 6789999999999999886531 11 13466888999998776553
No 200
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.14 E-value=0.0011 Score=65.74 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 155 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 155 (835)
-.++|+|..|.|||||+..+.... ...|+++.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 357799999999999999999877 678887777654
No 201
>PRK06921 hypothetical protein; Provisional
Probab=97.05 E-value=0.00059 Score=69.89 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 155 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 155 (835)
....+.++|..|+|||+||.++++.. . ...-..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEH
Confidence 45679999999999999999999987 2 221344667754
No 202
>PRK07261 topology modulation protein; Provisional
Probab=97.03 E-value=0.0018 Score=61.63 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRG 197 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 197 (835)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48899999999999999998775111124454544211 1223345556666666766
Q ss_pred CcEEEEEcccC
Q 003265 198 KRIVLLLDDIW 208 (835)
Q Consensus 198 k~~LlVlDdv~ 208 (835)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 6778863
No 203
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.03 E-value=0.0034 Score=74.43 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=58.2
Q ss_pred cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 166 (835)
.++|.+..++.+.+.+.. ....++.++|+.|+|||+||+.++... . ...+.++.+...+..
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~---~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---G---VHLERFDMSEYMEKH---- 524 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---c---CCeEEEeCchhhhcc----
Confidence 467888888888777652 123468899999999999999999876 2 223555554432211
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCc-EEEEEcccCC
Q 003265 167 DIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKR-IVLLLDDIWE 209 (835)
Q Consensus 167 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~ 209 (835)
.+.+.++.+.. ....+ ....+.+.++.++ -+++||+++.
T Consensus 525 ~~~~lig~~~g-yvg~~---~~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 525 TVSRLIGAPPG-YVGFE---QGGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred cHHHHhcCCCC-Ccccc---hhhHHHHHHHhCCCeEEEEechhh
Confidence 12222222211 01111 1223344454444 4999999964
No 204
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.01 E-value=0.011 Score=60.66 Aligned_cols=55 Identities=25% Similarity=0.252 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHH
Q 003265 103 QLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQ 165 (835)
Q Consensus 103 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 165 (835)
-++++..++..+ .-|.+.|++|+|||++|+.++... .. ..+.++++...+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 344455554433 356689999999999999998754 22 23455665555544443
No 205
>PRK08181 transposase; Validated
Probab=97.00 E-value=0.001 Score=67.75 Aligned_cols=77 Identities=23% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 003265 109 TCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKA 188 (835)
Q Consensus 109 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 188 (835)
+|+. ...-+.++|++|+|||.||..+.+.. ......++|+++ .++...+..... ........
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~~------~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTRT------TDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeeeH------HHHHHHHHHHHh-------CCcHHHHH
Confidence 4543 33568999999999999999999876 222234566643 345555543321 11222222
Q ss_pred HHHHHHhcCCcEEEEEcccC
Q 003265 189 LDIFRSLRGKRIVLLLDDIW 208 (835)
Q Consensus 189 ~~l~~~l~~k~~LlVlDdv~ 208 (835)
. .+ .+.=||||||+.
T Consensus 163 ~----~l-~~~dLLIIDDlg 177 (269)
T PRK08181 163 A----KL-DKFDLLILDDLA 177 (269)
T ss_pred H----HH-hcCCEEEEeccc
Confidence 2 22 234499999994
No 206
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.00092 Score=70.34 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV 155 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 155 (835)
...+.++|..|+|||+||..+++... ... ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 37799999999999999999999872 222 34666654
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.98 E-value=0.0078 Score=71.69 Aligned_cols=172 Identities=18% Similarity=0.198 Sum_probs=92.4
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.++.++++.+.+.- ...+.|.++|++|+|||+||+.+++.. ...| +.+..+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 467999999888777631 234678899999999999999999986 2222 222221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc--------c-----ccccccCCCCCCCCCcE
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV--------D-----LTKVGVPLPGPQNTTSK 229 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~~~~~~s~ 229 (835)
++ .... ...........+.......+.+|+|||+.... . ...+...+......+..
T Consensus 247 ~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11 1100 01111222222333345677899999985321 0 11122222111122333
Q ss_pred EEE-Eccchh-hhhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch
Q 003265 230 VVF-TTRFID-VCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL 294 (835)
Q Consensus 230 Iiv-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 294 (835)
+++ ||.... +...+ .-...+.+...+.++-.+++...........+ .....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCCH
Confidence 444 554332 22211 12356778888888888888866543322112 224567777888653
No 208
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.95 E-value=0.003 Score=61.42 Aligned_cols=89 Identities=19% Similarity=0.240 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDS-WKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 193 (835)
.++|.++|+.|+||||.+-+++... ... -..+..++... .....+-++..++.++.+-.. ....+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3689999999999999998888877 222 34466666543 235667778888888765211 122344444443333
Q ss_pred HhcCCc-EEEEEccc
Q 003265 194 SLRGKR-IVLLLDDI 207 (835)
Q Consensus 194 ~l~~k~-~LlVlDdv 207 (835)
..+.++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 343333 47778876
No 209
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.90 E-value=0.0067 Score=72.83 Aligned_cols=45 Identities=29% Similarity=0.427 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+...+.. ....++.++|+.|+|||++|+.+++..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999988888877752 122478899999999999999999876
No 210
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.019 Score=62.80 Aligned_cols=153 Identities=22% Similarity=0.297 Sum_probs=90.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH-HH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDI-FR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~ 193 (835)
...-|.++|++|.|||-||++|+|.. +..| ++|-.+ ++ +...- .. .+..++.+ ++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----EL----lNkYV-------GE-SErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----EL----LNKYV-------GE-SERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HH----HHHHh-------hh-HHHHHHHHHHH
Confidence 45568899999999999999999987 5555 444332 11 11111 11 12223333 33
Q ss_pred HhcCCcEEEEEcccCCc-------cc------ccccccCCCC-CCCCCcEEEEEccchhhhh-c-c---CCCceEEeccC
Q 003265 194 SLRGKRIVLLLDDIWER-------VD------LTKVGVPLPG-PQNTTSKVVFTTRFIDVCG-S-M---EADRKFLVACL 254 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~~~-------~~------~~~l~~~l~~-~~~~~s~IivTtR~~~v~~-~-~---~~~~~~~l~~L 254 (835)
.-..-+++|+||.++.. .. ..++..-+.. ....|.-||-.|...++.. . + .-+....+..=
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCC
Confidence 33568999999999642 11 1122222220 1234555666665555422 1 2 22456677778
Q ss_pred ChHHHHHHHHHHhC--CCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 255 SEKDAWELFREKVG--EETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 255 ~~~~~~~lf~~~~~--~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
+.+|-.++++.... ......+-+++++++. .+|.|.-
T Consensus 680 n~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 680 NAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 88899999988877 4444566778888876 4566664
No 211
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.87 E-value=0.0095 Score=71.15 Aligned_cols=45 Identities=31% Similarity=0.385 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.++.+++|.+++.. ...+++.++|++|+|||++|+.+++..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467888889998887642 234589999999999999999999987
No 212
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.87 E-value=0.0031 Score=60.26 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=41.4
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++||-++.++++.-...+++.+-+.|.||+|+||||-+..+++..
T Consensus 28 dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 679999999999888888899999999999999999999998887
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=96.86 E-value=0.0026 Score=65.02 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+.|+|++|+|||+||..++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998775
No 214
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.84 E-value=0.0052 Score=59.26 Aligned_cols=96 Identities=23% Similarity=0.289 Sum_probs=61.1
Q ss_pred cccchHHHHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLV----EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.++|.|...+.+++--. .-..--|.+||.-|.|||+|++++.+.+ ....-. -|.|++.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glr--LVEV~k~------------- 122 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY---ADEGLR--LVEVDKE------------- 122 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH---HhcCCe--EEEEcHH-------------
Confidence 57899999888876543 2344568899999999999999999988 222222 2333221
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccC---CcccccccccCCC
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIW---ERVDLTKVGVPLP 221 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~---~~~~~~~l~~~l~ 221 (835)
.-.....|...| ..+||+|+.||+. .+..+..+...+.
T Consensus 123 ------------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 123 ------------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ------------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 011112233333 3589999999984 2344566655554
No 215
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.047 Score=57.80 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=58.2
Q ss_pred CCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccc-hhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCc
Q 003265 197 GKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRF-IDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETL 272 (835)
Q Consensus 197 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 272 (835)
+++=++|+|+++.. .....+...+. ...+++.+|++|.+ ..+... .+-+..+.+.+++.++..+.+.+. +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC---
Confidence 44558899999753 44556655555 44556655555544 444332 234578999999999999998765 11
Q ss_pred CCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 273 KSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 273 ~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
++ ...++..++|.|..+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1234677899997655443
No 216
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.83 E-value=0.0037 Score=65.32 Aligned_cols=116 Identities=24% Similarity=0.234 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 99 GLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 99 Gr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
++........+++.. ...+-+.|+|..|+|||.||.++++... ...+ .+.++.+. +++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEHH------HHHHHHHHHHhc
Confidence 444444555555543 2456799999999999999999999982 2233 35566443 455555554421
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCC--cccccc--cccC-CCCCCCCCcEEEEEcc
Q 003265 175 VGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWE--RVDLTK--VGVP-LPGPQNTTSKVVFTTR 235 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--l~~~-l~~~~~~~s~IivTtR 235 (835)
.+..... +.+ .+-=||||||+.. ..+|.. +... +...-..+..+|+||-
T Consensus 206 -------~~~~~~l----~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 -------GSVKEKI----DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -------CcHHHHH----HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 1122222 222 2455899999953 234532 3222 2201123455777776
No 217
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0031 Score=72.41 Aligned_cols=103 Identities=23% Similarity=0.338 Sum_probs=67.2
Q ss_pred cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 166 (835)
.++|.+..++.+.+.+.. .+..+....|+.|||||.||++++... -+.=+..+-+..|.-.. -+
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~E----kH 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYME----KH 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHH----HH
Confidence 578999999999888752 245677889999999999999999987 22224455555544322 22
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEcccCC
Q 003265 167 DIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRI-VLLLDDIWE 209 (835)
Q Consensus 167 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 209 (835)
.+.+-+|.+. ..-.-+-.-.|-+.++.++| +|.||+|..
T Consensus 565 sVSrLIGaPP----GYVGyeeGG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 SVSRLIGAPP----GYVGYEEGGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHhCCCC----CCceeccccchhHhhhcCCCeEEEechhhh
Confidence 3334444432 11111114456667788888 888999953
No 218
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.81 E-value=0.0093 Score=66.29 Aligned_cols=172 Identities=19% Similarity=0.109 Sum_probs=90.3
Q ss_pred cccchHHHHHHHHHHhh---c-------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---E-------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQ 165 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 165 (835)
.+.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. ...| +-+.++ .+
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l- 295 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL- 295 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh-
Confidence 45687766665544221 1 234678899999999999999999987 2222 112211 11
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc--------------ccccccCCCCCCCCCcEEE
Q 003265 166 EDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD--------------LTKVGVPLPGPQNTTSKVV 231 (835)
Q Consensus 166 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~l~~~l~~~~~~~s~Ii 231 (835)
.... ...+...+...+...-...+++|++|+++.... ...+...+. ....+.-||
T Consensus 296 ---~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~vI 364 (489)
T CHL00195 296 ---FGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVFVV 364 (489)
T ss_pred ---cccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceEEE
Confidence 1100 111112222222222345789999999963210 001111111 223344566
Q ss_pred EEccchh-hhhc----cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 232 FTTRFID-VCGS----MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 232 vTtR~~~-v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
.||.... +... ..-...+.+..-+.++-.++|..++......... ......+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 6776543 2211 1235678888889999999998877543211100 122355666676654
No 219
>PRK04132 replication factor C small subunit; Provisional
Probab=96.78 E-value=0.018 Score=67.72 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=95.4
Q ss_pred EEc--CCCCcHHHHHHHHHhhcccCCCCC-CeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 003265 121 LYG--MGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRG 197 (835)
Q Consensus 121 I~G--~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 197 (835)
+.| |.++||||+|..++++.. . ..+ ..++-+++++...+..+. +++..+..... .-..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~-g-~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~----------------~~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELF-G-ENWRHNFLELNASDERGINVIR-EKVKEFARTKP----------------IGGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhh-c-ccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCC----------------cCCC
Confidence 347 889999999999999861 1 222 246777888765554333 33333211100 0012
Q ss_pred CcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccc-hhhhhc-cCCCceEEeccCChHHHHHHHHHHhCCCCcC
Q 003265 198 KRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRF-IDVCGS-MEADRKFLVACLSEKDAWELFREKVGEETLK 273 (835)
Q Consensus 198 k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 273 (835)
+.-++|||+++.. .....+...+. .....+++|.++.+ ..+... .+-+..+.+.+++.++....+...+......
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999754 34555555443 33345566665554 334322 2346789999999999998888766543322
Q ss_pred CChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 274 SDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 274 ~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.+ .+....|++.++|.+..+..+
T Consensus 709 i~---~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 709 LT---EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 357788999999988544433
No 220
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.77 E-value=0.023 Score=60.88 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 101 QSQLEQVWTCLVE---ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 101 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.-.+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445666666665 467899999999999999999999988
No 221
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0088 Score=68.79 Aligned_cols=154 Identities=20% Similarity=0.215 Sum_probs=90.8
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC----CeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF----DCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
+++||+++++++++.|....-.--.++|.+|||||++|.-++.+. ...+-. +..++. .| +..-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-----LD-------~g~L 237 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-----LD-------LGSL 237 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----ec-------HHHH
Confidence 789999999999999986433334468999999999999888886 111111 111111 01 1111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEcccCCcc----------cccccccCCCCCCCCCcEEEEEccchhh-
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLR-GKRIVLLLDDIWERV----------DLTKVGVPLPGPQNTTSKVVFTTRFIDV- 239 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~l~~~l~~~~~~~s~IivTtR~~~v- 239 (835)
+... .-..+.++..+.+...++ .++.+|++|.+.+.. +...+..|.- ..+.-..|--||-++.-
T Consensus 238 vAGa---kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-ARGeL~~IGATT~~EYRk 313 (786)
T COG0542 238 VAGA---KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-ARGELRCIGATTLDEYRK 313 (786)
T ss_pred hccc---cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-hcCCeEEEEeccHHHHHH
Confidence 1111 134567777777777774 458999999986421 1122222221 12222234445544321
Q ss_pred -----hhccCCCceEEeccCChHHHHHHHHHH
Q 003265 240 -----CGSMEADRKFLVACLSEKDAWELFREK 266 (835)
Q Consensus 240 -----~~~~~~~~~~~l~~L~~~~~~~lf~~~ 266 (835)
+....-.+.+.+..-+.+++..++.-.
T Consensus 314 ~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 314 YIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 122234567888999999999988654
No 222
>PRK06526 transposase; Provisional
Probab=96.75 E-value=0.0016 Score=66.17 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+.|+|++|+|||+||..+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34578999999999999999998876
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.74 E-value=0.027 Score=67.20 Aligned_cols=170 Identities=21% Similarity=0.288 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.+..++.|.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 457888877777665531 234568899999999999999999987 3333 222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCcc-----c---------ccccccCCCC-CCCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERV-----D---------LTKVGVPLPG-PQNT 226 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-----~---------~~~l~~~l~~-~~~~ 226 (835)
+ ++... ... .+..+..+.+ .-+..+.+|+||+++... . ...+...+.. ....
T Consensus 522 ~----l~~~~-------vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 E----ILSKW-------VGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred H----Hhhcc-------cCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 1 11111 111 1223333333 335678999999985321 0 0111111210 1223
Q ss_pred CcEEEEEccchhhhh-c-c---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 227 TSKVVFTTRFIDVCG-S-M---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 227 ~s~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
+..||.||....... . + .-...+.+...+.++-.++|.............++ ..+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 445666776544321 1 1 23567888989999999999876654432222333 44556677754
No 224
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.74 E-value=0.0012 Score=58.93 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 225
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.74 E-value=0.009 Score=70.68 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=39.0
Q ss_pred cccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999988863 245689999999999999999999876
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.74 E-value=0.0021 Score=67.46 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 245789999999999999999999887
No 227
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.70 E-value=0.0067 Score=60.95 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH--------hCCCCCCCCCCCHH-
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK--------IGLVGDSWKSRSAE- 185 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~--------l~~~~~~~~~~~~~- 185 (835)
.-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++...+. +++.. +... ...+..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~----~~~~~~~ 92 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIF----EPSSFEE 92 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEE----eCCCHHH
Confidence 45699999999999999999998876 2234678999887 44444332 23222 1100 111222
Q ss_pred --HHHHHHHHHhcCCcEEEEEccc
Q 003265 186 --EKALDIFRSLRGKRIVLLLDDI 207 (835)
Q Consensus 186 --~~~~~l~~~l~~k~~LlVlDdv 207 (835)
+....+.+.++.+.-++|+|.+
T Consensus 93 ~~~~i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 93 QSEAIRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHHHHHhcccEEEEeCc
Confidence 2333344444456678888887
No 228
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.69 E-value=0.00039 Score=79.19 Aligned_cols=112 Identities=24% Similarity=0.177 Sum_probs=56.8
Q ss_pred cccEEeeccc-cccc--cchhhcCCCCCcEEecccc-cccCCcc---hHHhccCcccceeeecCcCccCcccCCCccccc
Q 003265 519 SLQLFDISLT-LIKE--LPEELKKLVNLKCLNLRWA-YRLNKIP---RQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLF 591 (835)
Q Consensus 519 ~L~~L~L~~~-~i~~--Lp~~i~~L~~L~~L~L~~~-~~l~~lp---~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 591 (835)
+|+.|.+.++ .+.. +-.....+.+|+.|++++| ......+ ......+++|+.|+++.+....
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is----------- 257 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT----------- 257 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-----------
Confidence 7777777776 4554 3345566778888888763 2222222 1124456777777777766321
Q ss_pred CCcccchHhhcC-CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCC
Q 003265 592 GGGEVLVQELLG-LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDA 644 (835)
Q Consensus 592 ~~~~~~~~~l~~-L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 644 (835)
...+..+.. +++|+.|.+..+..-.-..+......+++|++|++++|...
T Consensus 258 ---d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 258 ---DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred ---chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 122333332 56666666443321111222222222345666666655544
No 229
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.67 E-value=0.004 Score=69.38 Aligned_cols=72 Identities=25% Similarity=0.346 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
.-+++.++|++|+||||||+.++.+. .|. ++=|++|+.-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45789999999999999999999875 343 677888888887777777776665432 2
Q ss_pred h--cCCcEEEEEcccCC
Q 003265 195 L--RGKRIVLLLDDIWE 209 (835)
Q Consensus 195 l--~~k~~LlVlDdv~~ 209 (835)
+ .+++.-||+|+++-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 3 26888999999964
No 230
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.028 Score=64.34 Aligned_cols=173 Identities=20% Similarity=0.213 Sum_probs=102.4
Q ss_pred cccchHHHHHH---HHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQ---VWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~---l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
++.|-++.+++ +++.|.. .-.+-+.++|++|.|||-||++++-.. . +-|++++.. +
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----E 379 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----E 379 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----H
Confidence 45687765555 4555553 134668899999999999999999876 1 234555443 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc-----------------cccccccCCCCCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV-----------------DLTKVGVPLPGPQN 225 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~~~ 225 (835)
+ ...+...+ ...++.+...- ...+.++.+|+++... .+.++...+. ...
T Consensus 380 F----vE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-gf~ 446 (774)
T KOG0731|consen 380 F----VEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-GFE 446 (774)
T ss_pred H----HHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-CCc
Confidence 1 11111111 23344444443 4578999999986321 1222322222 111
Q ss_pred --CCcEEEEEccchhhhh--cc---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 226 --TTSKVVFTTRFIDVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 226 --~~s~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
.+..++-+|...++.. .+ .-++.+.++.=+...-.++|.-++...... .+..++.+ |+...-|++=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2233344565555422 12 235678888888888999999888765532 34566777 999999988654
No 231
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.64 E-value=0.0034 Score=60.82 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEE
Q 003265 100 LQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV 154 (835)
Q Consensus 100 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 154 (835)
+..+....++.|. ...++.+.|++|.|||.||.+.+-+. -..+.++.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 3445555666666 45699999999999999999888766 3347888887774
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0086 Score=60.85 Aligned_cols=74 Identities=26% Similarity=0.340 Sum_probs=46.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
+..-+.++|.+|+|||.||.++.++. . +..+ .+.++++ .++..++....... ....++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~-~~g~-sv~f~~~------~el~~~Lk~~~~~~----------~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L-KAGI-SVLFITA------PDLLSKLKAAFDEG----------RLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEEEH------HHHHHHHHHHHhcC----------chHHHHHHH
Confidence 66789999999999999999999998 2 3333 3556643 45555655554321 111122222
Q ss_pred hcCCcEEEEEcccC
Q 003265 195 LRGKRIVLLLDDIW 208 (835)
Q Consensus 195 l~~k~~LlVlDdv~ 208 (835)
+ .+-=||||||+-
T Consensus 165 l-~~~dlLIiDDlG 177 (254)
T COG1484 165 L-KKVDLLIIDDIG 177 (254)
T ss_pred h-hcCCEEEEeccc
Confidence 2 123389999984
No 233
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.63 E-value=0.0068 Score=72.56 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+.+.+.. ....++.++|+.|+|||.||+.++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999998888742 134578999999999999999998876
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.63 E-value=0.014 Score=58.60 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=50.7
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCC
Q 003265 103 QLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWK 180 (835)
Q Consensus 103 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 180 (835)
.+..+.+.... .....+.++|.+|+|||+||..+++... ..-..+++++ ..++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 34444444433 2335789999999999999999999872 2223456664 34454444443321 1
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEcccCC
Q 003265 181 SRSAEEKALDIFRSLRGKRIVLLLDDIWE 209 (835)
Q Consensus 181 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 209 (835)
..+.. .+.+.+. +.=+|||||+..
T Consensus 150 ~~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 11222 2333344 344888999953
No 235
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.024 Score=62.81 Aligned_cols=161 Identities=21% Similarity=0.238 Sum_probs=88.3
Q ss_pred cchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHH
Q 003265 98 VGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKL 164 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 164 (835)
=|.++.+.+|-+.+.- +..+-|..+|++|.|||++|+++++.. ...| +.+..+ +
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----E- 503 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----E- 503 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----H-
Confidence 3566666666544431 466789999999999999999999987 4455 222221 1
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCccc-------------ccccccCCCCCCCC--Cc
Q 003265 165 QEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERVD-------------LTKVGVPLPGPQNT--TS 228 (835)
Q Consensus 165 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~~~~~--~s 228 (835)
++.... . +.+..+..+.+ .-+--+.++.||.++...- +..+..-+. .... +.
T Consensus 504 ---L~sk~v-------G-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD-G~e~~k~V 571 (693)
T KOG0730|consen 504 ---LFSKYV-------G-ESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD-GLEALKNV 571 (693)
T ss_pred ---HHHHhc-------C-chHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc-cccccCcE
Confidence 111111 1 12223333333 3344678999999863210 112222222 1111 22
Q ss_pred EEEE-Eccchhhhh-ccC---CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHH
Q 003265 229 KVVF-TTRFIDVCG-SME---ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQ 283 (835)
Q Consensus 229 ~Iiv-TtR~~~v~~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 283 (835)
-||- |-|...+.. .+. .++.+.+..=+.+.-.++|+.++........-+++++++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 2332 444444422 233 356677777777778899999987766555545555544
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.60 E-value=0.071 Score=52.20 Aligned_cols=169 Identities=15% Similarity=0.288 Sum_probs=96.0
Q ss_pred cccchHHHHHH---HHHHhhcC------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH
Q 003265 96 KVVGLQSQLEQ---VWTCLVEE------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~---l~~~L~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 166 (835)
++||.++.+.+ |++.|.+. ..+-|..+|++|.|||.+|+++++.. +-.| +.+.. .++
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vka----t~l-- 187 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVKA----TEL-- 187 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEech----HHH--
Confidence 56888876654 56666652 46789999999999999999999987 3232 11111 111
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCc----------ccccc----cccCCCC-CCCCCcEE
Q 003265 167 DIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWER----------VDLTK----VGVPLPG-PQNTTSKV 230 (835)
Q Consensus 167 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~----l~~~l~~-~~~~~s~I 230 (835)
|-.-. .+....+.++.+.- +.-++++++|.++.. .+..+ +..-+.. ..+.|...
T Consensus 188 -iGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 -IGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred -HHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 11111 12233344444433 457899999998531 11111 1111210 24456667
Q ss_pred EEEccchhhhhc-cC--CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 231 VFTTRFIDVCGS-ME--ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 231 ivTtR~~~v~~~-~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
|-.|...++... .. -...|+..--+++|-..++...+..-....... .+.++++.+|+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 777766654321 11 234566666788888888888876544333333 34455556665
No 237
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.57 E-value=0.0092 Score=72.01 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=43.4
Q ss_pred cccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 96 KVVGLQSQLEQVWTCLVEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
.++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+.... ...-...+.+.++.
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 5789999999998887631 24578899999999999999999876 22223344555554
No 238
>PRK04296 thymidine kinase; Provisional
Probab=96.56 E-value=0.0024 Score=62.04 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLR 196 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 196 (835)
.++.|+|+.|.||||+|..++.+. ...-..++.+. ..++.......++..++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 478899999999999999988887 22223333332 1112222234455555533221112233444444444 33
Q ss_pred CCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh
Q 003265 197 GKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID 238 (835)
Q Consensus 197 ~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~ 238 (835)
++.-+||+|.+.-. .+..++...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 34459999998321 1122222221 345778999988743
No 239
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.55 E-value=0.0082 Score=61.17 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC----CCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLES----PTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS-------WKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 183 (835)
...+.=|+|.+|+|||.|+.+++-.. .. .+.=..++|++....+....+. +|++..+...+. ....+
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCC
Confidence 34688999999999999998876543 21 1223479999998888877765 466654332100 01122
Q ss_pred HHHHH---HHHHHHhc-CCcEEEEEccc
Q 003265 184 AEEKA---LDIFRSLR-GKRIVLLLDDI 207 (835)
Q Consensus 184 ~~~~~---~~l~~~l~-~k~~LlVlDdv 207 (835)
.+++. ..+...+. ++--|||+|.+
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHhhccccceEEEEecch
Confidence 33333 33333343 34448888887
No 240
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.55 E-value=0.0061 Score=73.25 Aligned_cols=103 Identities=21% Similarity=0.304 Sum_probs=59.3
Q ss_pred cccchHHHHHHHHHHhhc-------C--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------E--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 166 (835)
.++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.+++... +.-...+-+..+.-.+...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~---~~~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF---GSEDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc---CCccceEEEEchhcccccc---
Confidence 578999999998887752 1 234677999999999999999998761 2222334444443322111
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEcccCC
Q 003265 167 DIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRI-VLLLDDIWE 209 (835)
Q Consensus 167 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 209 (835)
+.+-++.+.. ....+. ...+.+.++.++| +++||++..
T Consensus 584 -~~~l~g~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 584 -VSKLIGSPPG-YVGYNE---GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred -HHHhcCCCCc-ccCcCc---cchHHHHHHhCCCeEEEECChhh
Confidence 1111222110 011111 1234455555654 899999964
No 241
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.52 E-value=0.0079 Score=59.69 Aligned_cols=88 Identities=14% Similarity=0.190 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh-CCCCCC---CCCCC---HHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI-GLVGDS---WKSRS---AEEK 187 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-~~~~~~---~~~~~---~~~~ 187 (835)
.-.++.|+|++|+|||+++.+++... ......++|++... ++...+.+ +++.. ...... ....+ ....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45799999999999999999988776 23356789998875 55544443 32221 000000 01112 2223
Q ss_pred HHHHHHHhcC-CcEEEEEccc
Q 003265 188 ALDIFRSLRG-KRIVLLLDDI 207 (835)
Q Consensus 188 ~~~l~~~l~~-k~~LlVlDdv 207 (835)
...+...+.. +.-+||+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4444454533 4568888887
No 242
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.51 E-value=0.012 Score=59.75 Aligned_cols=92 Identities=17% Similarity=0.286 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS-------WKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 183 (835)
.-.++.|+|.+|+|||+||.+++... .... ....++|++....++...+. ++++..+...+. ....+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 45789999999999999999997554 2222 13679999988776654443 334443321100 01112
Q ss_pred H---HHHHHHHHHHh-cC-CcEEEEEcccC
Q 003265 184 A---EEKALDIFRSL-RG-KRIVLLLDDIW 208 (835)
Q Consensus 184 ~---~~~~~~l~~~l-~~-k~~LlVlDdv~ 208 (835)
. ......+.+.+ +. +.-+||+|-+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2 23334444444 33 55688888873
No 243
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.014 Score=62.40 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=83.1
Q ss_pred cccchHHHHHHHHHHhhc-CCceE-EEEEcCCCCcHHHHHHHHHhhcccCCC------------------CCCeEEEEEe
Q 003265 96 KVVGLQSQLEQVWTCLVE-ESAGI-IGLYGMGGVGKTTLLTHINNKFLESPT------------------NFDCVIWVVV 155 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 155 (835)
.++|-+....++..+..+ +..+- +.++|++|+||||+|..+++....... ..+.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467778888888888874 44554 999999999999999999988721100 1123444444
Q ss_pred cCccC---HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEE
Q 003265 156 SKDLR---LEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKV 230 (835)
Q Consensus 156 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~I 230 (835)
++... ..+..+++.+...... ..++.-++++|+++.. ..-..+...+. .....+.+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEE
Confidence 44333 2333333333332211 0356789999999753 22334444443 44556777
Q ss_pred EEEccc-hhhhhcc-CCCceEEeccCChH
Q 003265 231 VFTTRF-IDVCGSM-EADRKFLVACLSEK 257 (835)
Q Consensus 231 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~ 257 (835)
|++|.. ..+.... ..+..+++.+.+..
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchHH
Confidence 777764 3333322 23456677663333
No 244
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.48 E-value=0.0018 Score=59.39 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 98 VGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
||....++++.+.+.. .....|.|.|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777777777777764 445677899999999999999998876
No 245
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.46 E-value=0.022 Score=57.34 Aligned_cols=92 Identities=20% Similarity=0.283 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS-------WKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 183 (835)
.-.++.|+|.+|+|||+||.+++... .... .-..++|+.....++...+. ++++......+. ....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 45799999999999999999987765 1111 12567899887776655443 333332211000 01234
Q ss_pred HHHHHHHHHHHhc----CCcEEEEEcccC
Q 003265 184 AEEKALDIFRSLR----GKRIVLLLDDIW 208 (835)
Q Consensus 184 ~~~~~~~l~~~l~----~k~~LlVlDdv~ 208 (835)
.++....+.+... .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4455554444432 344589999973
No 246
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.045 Score=53.33 Aligned_cols=164 Identities=20% Similarity=0.271 Sum_probs=91.2
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+-|-+++++++++.+.- ...+-+..+|++|.|||-+|++.+.+. ...|-
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL-------------- 234 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL-------------- 234 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH--------------
Confidence 345889999999988741 245678899999999999999998875 34442
Q ss_pred HHHH-HHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCc----cc------------ccccccCCCC-C
Q 003265 163 KLQE-DIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWER----VD------------LTKVGVPLPG-P 223 (835)
Q Consensus 163 ~~~~-~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----~~------------~~~l~~~l~~-~ 223 (835)
++.. ++.+.+ . .+...+.......- ...+.+|++|.++.. .+ .-++...+.. .
T Consensus 235 KLAgPQLVQMf-I-------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 235 KLAGPQLVQMF-I-------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred HhcchHHHhhh-h-------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 1111 111111 1 12233333333333 346899999997521 00 1112222220 1
Q ss_pred CCCCcEEEEEccchhhh-----hccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHH
Q 003265 224 QNTTSKVVFTTRFIDVC-----GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQI 284 (835)
Q Consensus 224 ~~~~s~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 284 (835)
.....+||-.|....|. .+-.-.+.++..--+++.-..++.-+.....+..+-+++++++.
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 23456788777665542 22223455665544444444555555554455556677777765
No 247
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.45 E-value=0.033 Score=58.21 Aligned_cols=86 Identities=23% Similarity=0.237 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++-|+|++|+||||||.+++... ...-..++||+....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45789999999999999999987765 2234568899887766643 33444432110 0223455556656
Q ss_pred HHHhc-CCcEEEEEcccC
Q 003265 192 FRSLR-GKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l~-~k~~LlVlDdv~ 208 (835)
...++ +..-+||+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55554 456699999983
No 248
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00056 Score=66.96 Aligned_cols=101 Identities=21% Similarity=0.112 Sum_probs=71.0
Q ss_pred CCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccc--hhhcCCCC
Q 003265 465 CPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELP--EELKKLVN 542 (835)
Q Consensus 465 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp--~~i~~L~~ 542 (835)
+.+++.|++.||...++. +...|+.|+||.||-| .|+.+- .+..+. +|+.|+|+.|.|..|- .-+.+|++
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvN----kIssL~-pl~rCt-rLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVN----KISSLA-PLQRCT-RLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecc----ccccch-hHHHHH-HHHHHHHHhcccccHHHHHHHhcCch
Confidence 445666777766543333 3578899999999999 777764 567777 9999999999887773 34678888
Q ss_pred CcEEecccccccCCcch----HHhccCcccceeee
Q 003265 543 LKCLNLRWAYRLNKIPR----QLISNYSRLCVLRM 573 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~----~~i~~L~~L~~L~l 573 (835)
|++|-|..|.....-+. .++.-|++|+.|+=
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 88888887765544432 34566777776653
No 249
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.42 E-value=0.02 Score=57.27 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=32.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 45789999999999999999998876 22334678887655443
No 250
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.41 E-value=0.0085 Score=60.69 Aligned_cols=92 Identities=22% Similarity=0.380 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHH--
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAE-- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~-- 185 (835)
..-.-++|+|.+|+|||||++.+++.. +.+| +.++++-+.+.. .+.++.+++...-..... ........
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 143 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGAR 143 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 345678999999999999999999987 3334 455666666654 456666666543211100 00111111
Q ss_pred ----HHHHHHHHHh--c-CCcEEEEEcccC
Q 003265 186 ----EKALDIFRSL--R-GKRIVLLLDDIW 208 (835)
Q Consensus 186 ----~~~~~l~~~l--~-~k~~LlVlDdv~ 208 (835)
...-.+.+++ + ++.+|+++||+-
T Consensus 144 ~~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 144 ARVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122234444 3 899999999984
No 251
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.029 Score=60.39 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=34.8
Q ss_pred ccchH---HHHHHHHHHhhcC--------C-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 97 VVGLQ---SQLEQVWTCLVEE--------S-AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 97 ~vGr~---~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+-|-| +++++|++.|.+. . .+-|.++|++|.|||-||++|+-..
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 34665 4677888888762 2 4568899999999999999999876
No 252
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.37 E-value=0.0097 Score=62.05 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=56.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++-|+|++|+||||||.++.... ...-..++||...+.++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999987776 2234567899777665542 34444432110 1223455566666
Q ss_pred HHHhc-CCcEEEEEcccC
Q 003265 192 FRSLR-GKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l~-~k~~LlVlDdv~ 208 (835)
...++ +..-+||+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55553 456799999984
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.33 E-value=0.022 Score=53.81 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL 159 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 159 (835)
++.|+|.+|+||||++..+.... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 46899999999999999998887 2244567788776554
No 254
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0048 Score=68.93 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-+|-++.+++|++.|.- -.-+++++||++|||||+|++.++...
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 458999999999999852 245799999999999999999999987
No 255
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.29 E-value=0.0014 Score=63.97 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=33.9
Q ss_pred ccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCC--c----hh--hccCCccEEeeecC
Q 003265 653 FADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDL--T----FL--VFAPSLKSLSLYGC 724 (835)
Q Consensus 653 l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l--~----~l--~~l~~L~~L~L~~~ 724 (835)
+..+++|+.|+|..|..... .....+ ......+.|+.|.+..| .++.- . .+ ...|+|+.|...++
T Consensus 210 l~y~~~LevLDlqDNtft~~-gS~~La-----~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLE-GSRYLA-----DALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHHhCcceeeeccccchhhh-hHHHHH-----HHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchh
Confidence 44566777777766542210 000110 00012455777777777 33321 1 11 14577777777665
Q ss_pred ccchhh
Q 003265 725 NAMEEI 730 (835)
Q Consensus 725 ~~l~~~ 730 (835)
..-..+
T Consensus 283 e~~~~~ 288 (388)
T COG5238 283 ERRGGI 288 (388)
T ss_pred hhcCce
Confidence 543333
No 256
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.28 E-value=0.0097 Score=69.83 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.++.+.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888888887752 124578899999999999999998876
No 257
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.28 E-value=0.0095 Score=58.17 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 105 EQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 105 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+.+..+..+.-++..|.|++|.||||+++.+....
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 344444544555789999999999999999988877
No 258
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.0063 Score=60.96 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 99 GLQSQLEQVWTCLVE---ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 99 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.+.+++|.+.+.. +...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366677777777753 467799999999999999999999987
No 259
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.26 E-value=0.0022 Score=37.39 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=12.7
Q ss_pred cccEEeeccccccccchhhcC
Q 003265 519 SLQLFDISLTLIKELPEELKK 539 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp~~i~~ 539 (835)
+|++|||++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 260
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.25 E-value=0.0092 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEE
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 153 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 153 (835)
...+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999988 3445555555
No 261
>PRK06762 hypothetical protein; Provisional
Probab=96.24 E-value=0.049 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999876
No 262
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.11 Score=55.42 Aligned_cols=147 Identities=17% Similarity=0.161 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL- 195 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 195 (835)
|--.++||+|.|||+++.++++.. .|+. .=+..+...+-.+ |+..|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydI-ydLeLt~v~~n~d---------------------------Lr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDI-YDLELTEVKLDSD---------------------------LRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCce-EEeeeccccCcHH---------------------------HHHHHH
Confidence 456799999999999999999987 3442 1122211111111 22222
Q ss_pred -cCCcEEEEEcccCCccc-----------cc---------ccccCCC---CCCCCCcEEEEEccchhhh-----hccCCC
Q 003265 196 -RGKRIVLLLDDIWERVD-----------LT---------KVGVPLP---GPQNTTSKVVFTTRFIDVC-----GSMEAD 246 (835)
Q Consensus 196 -~~k~~LlVlDdv~~~~~-----------~~---------~l~~~l~---~~~~~~s~IivTtR~~~v~-----~~~~~~ 246 (835)
...+-+||+.|++-..+ .. -+...+. ...+.---||+||-..+-. ..-..+
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 23567888888863211 11 1222221 0111122345588765532 222335
Q ss_pred ceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHH
Q 003265 247 RKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRA 302 (835)
Q Consensus 247 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~ 302 (835)
..+.+.-=+.+....|+...++.+. .+ .+..+|.+.-.|.-+.=..++..
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHH
Confidence 6788888899999999999987643 22 34455555445544433444433
No 263
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.20 E-value=0.006 Score=59.80 Aligned_cols=90 Identities=18% Similarity=0.013 Sum_probs=41.2
Q ss_pred cccceeeecCCCCCCC--cccccccccccccccceecccccccccc---cccchhcccccCCcccCCCccEEeEecCCCC
Q 003265 630 KSCIRSLFLPLAGDAT--SIIDATAFADLNHLNELGIDRAEELEEL---KIDYAEIVRKRREPFVFRSLHLVAIYECHKL 704 (835)
Q Consensus 630 ~~~L~~L~l~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~l~~l---~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 704 (835)
+.+|+.|+|.++.... +......++..+.|+.|.+..|-....- ....+.. ..+|+|..|...++..-
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e-------~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE-------KFVPNLMPLPGDYNERR 285 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh-------hcCCCccccccchhhhc
Confidence 3456666665553221 1111224455556777777666321110 0111110 24567777766655422
Q ss_pred CC------Cchh--hccCCccEEeeecCcc
Q 003265 705 KD------LTFL--VFAPSLKSLSLYGCNA 726 (835)
Q Consensus 705 ~~------l~~l--~~l~~L~~L~L~~~~~ 726 (835)
.. ++.+ ..+|-|..|.+.+|..
T Consensus 286 ~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 286 GGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred CceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 21 1111 2566666666666543
No 264
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.19 E-value=0.024 Score=59.39 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=55.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS-------WKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 183 (835)
.-+++-|+|++|+|||+|+.+++-.. ... ..=..++||+....++.+.+. ++++.++...+. ....+
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence 45688899999999999998876433 111 122478999998888877765 456666543211 01122
Q ss_pred HHHHH---HHHHHHhc-CCcEEEEEccc
Q 003265 184 AEEKA---LDIFRSLR-GKRIVLLLDDI 207 (835)
Q Consensus 184 ~~~~~---~~l~~~l~-~k~~LlVlDdv 207 (835)
.+... ..+...+. ++--|||+|.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33333 33333343 34457888887
No 265
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.18 E-value=0.01 Score=60.89 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=33.5
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHH
Q 003265 99 GLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHIN 137 (835)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~ 137 (835)
+|..+..--+++|.++++..|.+.|.+|.|||-||-+..
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 566677777889999999999999999999999997654
No 266
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.17 E-value=0.0061 Score=67.31 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLV------EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.+++|++.|. +...+++.++|++|+||||||+.++.-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 47899999999999983 2466899999999999999999999987
No 267
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.038 Score=58.55 Aligned_cols=89 Identities=21% Similarity=0.204 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
..++|+|+|++|+||||++..++... . ...+ .+..++.... ....+-+...+..++.+.. ...+...+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 34799999999999999999998877 2 2222 3444544322 1222333344444443321 12344555544444
Q ss_pred HhcC-CcEEEEEcccC
Q 003265 194 SLRG-KRIVLLLDDIW 208 (835)
Q Consensus 194 ~l~~-k~~LlVlDdv~ 208 (835)
.-.. +.=+|++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3222 23477888763
No 268
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.16 E-value=0.0098 Score=62.02 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.....++|+|++|.|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999997
No 269
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.16 E-value=0.0024 Score=62.62 Aligned_cols=90 Identities=27% Similarity=0.228 Sum_probs=49.8
Q ss_pred hcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeecccccccc--chhhcCCCCCcEEecccccccCCcc---hH
Q 003265 486 FQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKEL--PEELKKLVNLKCLNLRWAYRLNKIP---RQ 560 (835)
Q Consensus 486 ~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~L--p~~i~~L~~L~~L~L~~~~~l~~lp---~~ 560 (835)
|..+++|+.|.++.|... ....++..+-+++ +|++|++++|+|+.+ -..+..+.+|..|++.+|.. ..+- ..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~-~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~-~~l~dyre~ 137 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRR-VSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV-TNLDDYREK 137 (260)
T ss_pred CCCcchhhhhcccCCccc-ccccceehhhhCC-ceeEEeecCCccccccccchhhhhcchhhhhcccCCc-cccccHHHH
Confidence 445566666666666211 2223333344444 777777777765542 12244566677777777742 2222 34
Q ss_pred HhccCcccceeeecCcCc
Q 003265 561 LISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 561 ~i~~L~~L~~L~l~~~~~ 578 (835)
++.-|++|++|+-..+.-
T Consensus 138 vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHHHhhhhccccccccCC
Confidence 466678888887765443
No 270
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.16 E-value=0.054 Score=53.56 Aligned_cols=180 Identities=11% Similarity=0.117 Sum_probs=101.8
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccc---CCCCCCeEEEEEecCc----------c---
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLE---SPTNFDCVIWVVVSKD----------L--- 159 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~----------~--- 159 (835)
.+.++++....+......++.+-..++|+.|.||-|.+..+.++.-. .+-.-+.+.|.+-|.. .
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 46678888888877777678899999999999998887776666411 1122344555543332 0
Q ss_pred --------CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEcccCCc--ccccccccCCCCCCCCCc
Q 003265 160 --------RLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRI-VLLLDDIWER--VDLTKVGVPLPGPQNTTS 228 (835)
Q Consensus 160 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~~s 228 (835)
.-+-+.+++++++..... + ..-..+.| ++|+-.+++. +.-..++.... .=...+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~q-------------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~ 158 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQ-------------I-ETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNC 158 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcc-------------h-hhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCc
Confidence 011222333333221110 0 00122445 5566655431 22222222221 122346
Q ss_pred EEEEEccch-hhhhcc-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 229 KVVFTTRFI-DVCGSM-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 229 ~IivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
|+|+...+- .+.... +-+-.+++...+++|....+++.+..+....+ .+++.+|+++++|+-
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNL 222 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccH
Confidence 666643321 121111 22456889999999999999998876664443 689999999999974
No 271
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.13 E-value=0.03 Score=59.18 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC----CCCCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLES----PTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 175 (835)
..+++-|+|.+|+|||+|+.+++-.. .. .+.-..++||+....|+...+.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 45688899999999999999886433 11 12235789999999888877654 56666543
No 272
>PRK09354 recA recombinase A; Provisional
Probab=96.12 E-value=0.016 Score=61.04 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++-|+|++|+||||||.++.... ...-..++||.....++.. .+++++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45789999999999999999987766 2334678899887776652 34444432111 1223455556656
Q ss_pred HHHhc-CCcEEEEEcccC
Q 003265 192 FRSLR-GKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l~-~k~~LlVlDdv~ 208 (835)
...++ ++.-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456699999984
No 273
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.016 Score=56.12 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=45.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
.+.+|+|.|.+|.||||+|+.++..+ .... +.-++-..-+. ..-............+.....+.+-..+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35789999999999999999999998 3332 12222111110 011111111112222223455667777888888
Q ss_pred hcCCc
Q 003265 195 LRGKR 199 (835)
Q Consensus 195 l~~k~ 199 (835)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 274
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.08 E-value=0.0075 Score=59.06 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE-KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
.+|.|+|+.|.||||++..+.... .......++.- .++.... .-...+..+-. ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 478999999999999999888776 22333344332 2211100 00001111100 0111233455677778
Q ss_pred cCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhh
Q 003265 196 RGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDV 239 (835)
Q Consensus 196 ~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v 239 (835)
+..+=++++|++.+......+... ...|..++.|+-...+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~----a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTA----AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHH----HHcCCEEEEEecCCcH
Confidence 777889999999765544433222 1234556667665443
No 275
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.02 Score=57.77 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESP--TNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
-++|.++|++|.|||+|.++++++. .++ +.+....-+.++.. .++...... ...-...+-.+|.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 5789999999999999999999997 432 33444444433221 222222211 22234445555666
Q ss_pred HhcCCc--EEEEEcccCC
Q 003265 194 SLRGKR--IVLLLDDIWE 209 (835)
Q Consensus 194 ~l~~k~--~LlVlDdv~~ 209 (835)
.+.++. +.+.+|+|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 665544 5677899853
No 276
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.08 E-value=0.025 Score=53.95 Aligned_cols=126 Identities=18% Similarity=0.209 Sum_probs=64.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC--CC---CCC--eEEEEEecCccCHHHHHHHHHHHhCCCCC----CCCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLES--PT---NFD--CVIWVVVSKDLRLEKLQEDIGKKIGLVGD----SWKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 183 (835)
.-.+++|+|+.|.|||||.+.+..+.-.+ .. .|. .+.|+ .+ .+.+..++.... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45689999999999999999986431000 11 111 12232 11 345566654321 111112
Q ss_pred H-HHHHHHHHHHhcCC--cEEEEEcccCCcc---cccccccCCCCCCCCCcEEEEEccchhhhhccCCCceEEec
Q 003265 184 A-EEKALDIFRSLRGK--RIVLLLDDIWERV---DLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSMEADRKFLVA 252 (835)
Q Consensus 184 ~-~~~~~~l~~~l~~k--~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~~~~~~~l~ 252 (835)
. +...-.+.+.+..+ +-++++|+.-..- ..+.+...+......|..||++|.+...... .++.+.+.
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l~ 162 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDFG 162 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEEC
Confidence 2 23333455566666 7889999974322 2222222222111235678888887665432 44555553
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.06 E-value=0.04 Score=60.38 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDSW-KSRSAEEKALDIF 192 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 192 (835)
...+|.++|.+|+||||+|..++..+ .. ..+ .+.-|++.. .....+.+..++.+++.+.... ...+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-KK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999999887 32 223 334444322 1233455666677765432111 1223333333333
Q ss_pred HHhcCCcEEEEEccc
Q 003265 193 RSLRGKRIVLLLDDI 207 (835)
Q Consensus 193 ~~l~~k~~LlVlDdv 207 (835)
+.+.+. =+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333343 56888886
No 278
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.06 E-value=0.02 Score=54.74 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=42.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
...-+.++|..|+|||.||..+.+... .... .+.|+.+ .+++..+-..- ........ .+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g~-~v~f~~~------~~L~~~l~~~~-------~~~~~~~~----~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKGY-SVLFITA------SDLLDELKQSR-------SDGSYEEL----LKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEEH------HHHHHHHHCCH-------CCTTHCHH----HHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCCc-ceeEeec------Cceeccccccc-------cccchhhh----cCc
Confidence 446799999999999999999998872 2232 3566643 34554443221 11122222 223
Q ss_pred hcCCcEEEEEcccCC
Q 003265 195 LRGKRIVLLLDDIWE 209 (835)
Q Consensus 195 l~~k~~LlVlDdv~~ 209 (835)
+. +-=||||||+-.
T Consensus 106 l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 106 LK-RVDLLILDDLGY 119 (178)
T ss_dssp HH-TSSCEEEETCTS
T ss_pred cc-cccEecccccce
Confidence 33 234788999853
No 279
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.13 Score=49.89 Aligned_cols=167 Identities=19% Similarity=0.260 Sum_probs=92.3
Q ss_pred cc-chHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 97 VV-GLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 97 ~v-Gr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
+| |-++++.+|.+.+.- .+.+-+.++|++|.|||-||++|+++. ...|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 45 457777776665531 356778899999999999999999986 2455667664
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc----------c------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV----------D------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------~------~~~l~~~l~~-~~ 224 (835)
++.+..+.. ......++.-.- ..-+.+|++|++++.. + .-++...+.. ..
T Consensus 216 elvqk~ige------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ELVQKYIGE------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHHhhh------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 222221110 111222222211 3567889999986421 0 1112222210 12
Q ss_pred CCCcEEEEEccchhhhh-----ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHH
Q 003265 225 NTTSKVVFTTRFIDVCG-----SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAK 287 (835)
Q Consensus 225 ~~~s~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~ 287 (835)
.+.-+||.+|..-++.. .-..++.++..+-+++.-.+++.-+....+...--++..+|+++..
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPG 351 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCC
Confidence 34557887776554432 1123567788887777777777655443333333455555555443
No 280
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.05 E-value=0.042 Score=58.27 Aligned_cols=57 Identities=19% Similarity=0.400 Sum_probs=41.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
...++-|+|++|+|||+++.+++... .... .=..++||+....++...+. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 45788999999999999999988764 2211 11479999998888776665 3444444
No 281
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.04 E-value=0.013 Score=54.21 Aligned_cols=116 Identities=24% Similarity=0.217 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC---ccCHHHHHHHHHHHh-----CCCCCCCCCCCHHH--
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK---DLRLEKLQEDIGKKI-----GLVGDSWKSRSAEE-- 186 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~-- 186 (835)
..|-|++..|.||||+|-..+-+.. ...+ .+.++..-+ ......+++.+- .+ +.. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~-~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRG-FFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCC-CccCCCChHHHH
Confidence 5788999999999999998877751 2233 344443322 233344443331 11 100 0001111111
Q ss_pred -----HHHHHHHHhcCCc-EEEEEcccCCc-----ccccccccCCCCCCCCCcEEEEEccchh
Q 003265 187 -----KALDIFRSLRGKR-IVLLLDDIWER-----VDLTKVGVPLPGPQNTTSKVVFTTRFID 238 (835)
Q Consensus 187 -----~~~~l~~~l~~k~-~LlVlDdv~~~-----~~~~~l~~~l~~~~~~~s~IivTtR~~~ 238 (835)
..+..++.+.... =|||||++-.. .+.+++...+. ....+.-||+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 1222334444444 49999998432 33444444444 4455778999999843
No 282
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0034 Score=61.56 Aligned_cols=111 Identities=25% Similarity=0.210 Sum_probs=77.3
Q ss_pred CceEEEEeeeCCccccCCCCCCCcceEEEeccCC--cc-cccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcc
Q 003265 444 ENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQ--EL-KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSL 520 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L 520 (835)
..+..+++.+..+..+...+.+++|+.|.++.|. .. .++.- ...+++|++|+|++|.+. .+..++ .+..+. +|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~-~lstl~-pl~~l~-nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIK-DLSTLR-PLKELE-NL 118 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccc-cccccc-hhhhhc-ch
Confidence 4666777777777777778999999999999662 22 33332 456699999999999432 122333 456777 89
Q ss_pred cEEeeccccccccc----hhhcCCCCCcEEecccccccCCcch
Q 003265 521 QLFDISLTLIKELP----EELKKLVNLKCLNLRWAYRLNKIPR 559 (835)
Q Consensus 521 ~~L~L~~~~i~~Lp----~~i~~L~~L~~L~L~~~~~l~~lp~ 559 (835)
..|++.+|..+.+- ..+.-+++|.+||-.... -...|.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~-~~Ea~~ 160 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD-GEEAPE 160 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccC-Cccccc
Confidence 99999999777662 345678899999876653 234443
No 283
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.01 E-value=0.031 Score=57.95 Aligned_cols=88 Identities=25% Similarity=0.325 Sum_probs=47.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
..++++|+|+.|+||||++..++... .....-..+..|+..... ...+.+....+.++.+.. ...+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH
Confidence 35699999999999999999998876 222111245555543321 222333333444443321 12233444333333
Q ss_pred HhcCCcEEEEEccc
Q 003265 194 SLRGKRIVLLLDDI 207 (835)
Q Consensus 194 ~l~~k~~LlVlDdv 207 (835)
+.+ .=+|++|..
T Consensus 270 -~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 -LRD-KDLILIDTA 281 (282)
T ss_pred -ccC-CCEEEEeCC
Confidence 333 347777753
No 284
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.02 Score=63.73 Aligned_cols=72 Identities=28% Similarity=0.250 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
..-|.|.|+.|+|||+||+++++... +...-++.+|+++.-. ..+++++.+.. .+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-------------------vfse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-------------------VFSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-------------------HHHH
Confidence 35688999999999999999999983 5666677778776532 23333332222 2334
Q ss_pred HhcCCcEEEEEcccC
Q 003265 194 SLRGKRIVLLLDDIW 208 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~ 208 (835)
.+...+-+|||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 556789999999985
No 285
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.00 E-value=0.032 Score=58.71 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=40.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
...++.|+|.+|+|||+|+..++... ... +.-..++|++....+.... +.++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 46799999999999999999887643 111 1223679999888777665 3445555543
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.008 Score=54.36 Aligned_cols=24 Identities=46% Similarity=0.516 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999987
No 287
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.98 E-value=0.065 Score=52.32 Aligned_cols=82 Identities=20% Similarity=0.146 Sum_probs=46.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCC---eEEEEEecCccCHHHHHHHHHHHh--CCCCCCCCCCCHHHHHHHHH
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKFLESPTNFD---CVIWVVVSKDLRLEKLQEDIGKKI--GLVGDSWKSRSAEEKALDIF 192 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 192 (835)
||+|.|++|+||||+|+.+.... .. .... ....+.............. .... ..........+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L-~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL-NK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-Cc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 79999999999999999999988 21 2232 2333333322222222221 1111 11112224566777777777
Q ss_pred HHhcCCcEEE
Q 003265 193 RSLRGKRIVL 202 (835)
Q Consensus 193 ~~l~~k~~Ll 202 (835)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666766544
No 288
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.13 Score=54.50 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=38.4
Q ss_pred CcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch-hhhhc-cCCCceEEeccCChHHHHHHHHHH
Q 003265 198 KRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI-DVCGS-MEADRKFLVACLSEKDAWELFREK 266 (835)
Q Consensus 198 k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 266 (835)
++-++|+|++... ..-..+...+. ....++.+|++|.+. .+... .+.+..+.+.+++.+++.+.+.+.
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3445566877542 22223333332 222345566666654 34322 233578899999999999888654
No 289
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.95 E-value=0.028 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 290
>PHA00729 NTP-binding motif containing protein
Probab=95.94 E-value=0.011 Score=57.96 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=28.8
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 106 QVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 106 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555666666789999999999999999999875
No 291
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.93 E-value=0.043 Score=56.13 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 105 EQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 105 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++..+++...+..+|.|.|.+|.|||||+..+....
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555556788999999999999999999999986
No 292
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.92 E-value=0.013 Score=55.43 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=45.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC-
Q 003265 119 IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRG- 197 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~- 197 (835)
+.|.|.+|+|||++|.++.... ...++++.-.+.++.+ +.+.|.+-.......+ ...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w---~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRRPAHW---RTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCc---eEeecHHHHHHHHHhc
Confidence 6799999999999999987652 2356777777666543 4444333221112112 222223334444421
Q ss_pred -CcEEEEEccc
Q 003265 198 -KRIVLLLDDI 207 (835)
Q Consensus 198 -k~~LlVlDdv 207 (835)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 3347999997
No 293
>PRK06547 hypothetical protein; Provisional
Probab=95.91 E-value=0.012 Score=55.92 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 107 VWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 107 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+...+......+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555678899999999999999999998875
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.88 E-value=0.048 Score=55.15 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=35.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDI 168 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 168 (835)
.-.++.|.|.+|+|||++|.++.... ...-..++||+... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 45799999999999999999877654 12345688888765 344555543
No 295
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.016 Score=64.66 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=47.2
Q ss_pred cccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKL 164 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 164 (835)
.-+|.++-+++|++++.- -+-++++.+|++|||||++|+.++.... +..|. +++..-.|+.++
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFfR----fSvGG~tDvAeI 480 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFFR----FSVGGMTDVAEI 480 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceEE----EeccccccHHhh
Confidence 568999999999998852 3568999999999999999999999881 23332 345554454444
No 296
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.87 E-value=0.11 Score=60.61 Aligned_cols=170 Identities=21% Similarity=0.218 Sum_probs=89.4
Q ss_pred cccchHHHHHHHHHHh---hc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCL---VE---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.+.|.+...+++.+.+ .. .-.+-|.|+|++|+|||++|+.++... ...| +.++.++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 3457666555554433 22 113458999999999999999999876 2233 2222221
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc----------------ccccccCCCC-CCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD----------------LTKVGVPLPG-PQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~-~~~~ 226 (835)
+.. .. ...........+.......+.+|+||+++.... ...+...+.. ....
T Consensus 221 ~~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FVE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hHH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 111 11 001112222233333445789999999864210 1111111110 1233
Q ss_pred CcEEEEEccchhhhh-c-c---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 227 TSKVVFTTRFIDVCG-S-M---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 227 ~s~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
+..||.||...+... . . .-.+.+.+..-+.++-.+++..++.........++ ..+++.+.|.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~----~~la~~t~G~ 356 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA----AIIARGTPGF 356 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH----HHHHhhCCCC
Confidence 455666777655322 1 1 23567888888888888888887755432222222 2355556664
No 297
>PTZ00035 Rad51 protein; Provisional
Probab=95.86 E-value=0.058 Score=57.33 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccC----CCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLES----PTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
...++.|+|.+|+|||+|+..++-.. +. .+.-..++||+....++... +.++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 45789999999999999999887554 21 11224577998877777666 3445555543
No 298
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.85 E-value=0.037 Score=60.42 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDS-WKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 193 (835)
..++.++|.+|+||||+|..++... ..+..+ .+.-|++.. .+...+.+......++.+... ....+.........+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 5689999999999999999888775 211222 234444332 112233344445555443211 112334444444444
Q ss_pred HhcCCcE-EEEEcccC
Q 003265 194 SLRGKRI-VLLLDDIW 208 (835)
Q Consensus 194 ~l~~k~~-LlVlDdv~ 208 (835)
....+.| ++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4434445 77777763
No 299
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.19 Score=48.86 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=34.6
Q ss_pred ccchHHHHHHHHHHhh-------------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 97 VVGLQSQLEQVWTCLV-------------EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 97 ~vGr~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+-|.+-+++++.+... -+..+-|.++|++|.|||.||++|+++.
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 3466767777666543 1567888999999999999999999987
No 300
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.84 E-value=0.028 Score=60.37 Aligned_cols=84 Identities=20% Similarity=0.316 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW---KSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 191 (835)
.-.++.|.|.+|+|||||+.+++... ...-..++|++.... ..++ ..-++.++...+.. ...+.+.+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 45699999999999999999998876 222346788876543 2222 22234454332211 122233333322
Q ss_pred HHHhcCCcEEEEEccc
Q 003265 192 FRSLRGKRIVLLLDDI 207 (835)
Q Consensus 192 ~~~l~~k~~LlVlDdv 207 (835)
. ..+.-+||+|.+
T Consensus 155 ~---~~~~~lVVIDSI 167 (372)
T cd01121 155 E---ELKPDLVIIDSI 167 (372)
T ss_pred H---hcCCcEEEEcch
Confidence 2 346678899987
No 301
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.84 E-value=0.064 Score=50.17 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=71.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEE---------------------ecCcc-------------
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV---------------------VSKDL------------- 159 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------~s~~~------------- 159 (835)
..-.++.|+|++|.|||||.+.+|... + .-...+|+. |-+++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e-~---pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA 101 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE-R---PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVA 101 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh-c---CCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhh
Confidence 345689999999999999999999875 1 122334441 11111
Q ss_pred --------CHHHHHHHH---HHHhCCCCC----CCCCCCHHHHHHHHHHHhcCCcEEEEEcccC----CcccccccccCC
Q 003265 160 --------RLEKLQEDI---GKKIGLVGD----SWKSRSAEEKALDIFRSLRGKRIVLLLDDIW----ERVDLTKVGVPL 220 (835)
Q Consensus 160 --------~~~~~~~~i---~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~----~~~~~~~l~~~l 220 (835)
...++.+.+ +...+.... +..-...++..-.|.+.+-+++-+++-|+-- ....|+-+ ..|
T Consensus 102 ~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lf 180 (223)
T COG2884 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLF 180 (223)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHH
Confidence 112222222 222222110 0111223344445777788899999999852 22334332 223
Q ss_pred CCCCCCCcEEEEEccchhhhhccC
Q 003265 221 PGPQNTTSKVVFTTRFIDVCGSME 244 (835)
Q Consensus 221 ~~~~~~~s~IivTtR~~~v~~~~~ 244 (835)
..-+..|.-|+++|.+..+-..+.
T Consensus 181 eeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 181 EEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHhhcCcEEEEEeccHHHHHhcc
Confidence 223567899999999988876653
No 302
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.82 E-value=0.027 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998865
No 303
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.025 Score=52.91 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++.|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999998874
No 304
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.034 Score=59.36 Aligned_cols=89 Identities=22% Similarity=0.306 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
...++.++|+.|+||||++.+++... ........+..++... .....+-++...+.++.+... ..+..+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~-~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC-VMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 35799999999999999999999876 1111223455555322 123445555556666554321 11222222222 3
Q ss_pred HhcCCcEEEEEcccC
Q 003265 194 SLRGKRIVLLLDDIW 208 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~ 208 (835)
.+.++ =++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34444 456699873
No 305
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.81 E-value=0.052 Score=54.20 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=73.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-----ccCHHHHHHHHHHHhCCCCCCC----CCCC-
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-----DLRLEKLQEDIGKKIGLVGDSW----KSRS- 183 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~- 183 (835)
.+..+++|+|..|.||||+++.+..-. +... ..++....+ .....+-..++++.++...+.. .+-+
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~---~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLE---EPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCc---CCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 355799999999999999999998765 2222 333333211 2223445556666666443110 1111
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccCCcccc------cccccCCCCCCCCCcEEEEEccchhhhhccCC
Q 003265 184 AEEKALDIFRSLRGKRIVLLLDDIWERVDL------TKVGVPLPGPQNTTSKVVFTTRFIDVCGSMEA 245 (835)
Q Consensus 184 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~------~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~~ 245 (835)
.+...-.+.++|.-++-++|.|+.-+..+. -.+..-+ ....|-..++.|-+-.+...+..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dl--q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDL--QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHH--HHHhCCeEEEEEEEHHhhhhhcc
Confidence 222233467888999999999997543221 1111112 23345667788887777665543
No 306
>PRK10867 signal recognition particle protein; Provisional
Probab=95.80 E-value=0.039 Score=60.30 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.++|.+|+||||.+..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999998888776
No 307
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.73 E-value=0.041 Score=52.91 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=64.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC------------CCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS------------WKSR 182 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 182 (835)
.-.+++|.|+.|.|||||++.++... .. -...+++.-. ++......+.+.++..... ...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL-KP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC-CC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 45689999999999999999998875 11 1223333211 1111111111222110000 0011
Q ss_pred C-HHHHHHHHHHHhcCCcEEEEEcccCCccc---ccccccCCCCCCCCCcEEEEEccchhhhhccCCCceEEe
Q 003265 183 S-AEEKALDIFRSLRGKRIVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRFIDVCGSMEADRKFLV 251 (835)
Q Consensus 183 ~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~~~~~~~l 251 (835)
+ .+...-.+.+.+..++=++++|+....-+ -+.+...+. ....+..||++|.+...... ..+.+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 12233345666777888999999854322 222222222 11125667778777665442 3455544
No 308
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.72 E-value=0.069 Score=52.53 Aligned_cols=95 Identities=24% Similarity=0.430 Sum_probs=56.9
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCC----CCCC
Q 003265 108 WTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGD----SWKS 181 (835)
Q Consensus 108 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~ 181 (835)
++.+.. ..-.-++|.|.+|+|||+|+..+.+.. .-+.++++.+.+. ..+.++.+++...-..... ....
T Consensus 6 ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 6 IDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 444443 334678999999999999999999986 1234478877765 4566777766543111100 0011
Q ss_pred CCHHHHH------HHHHHHh--cCCcEEEEEccc
Q 003265 182 RSAEEKA------LDIFRSL--RGKRIVLLLDDI 207 (835)
Q Consensus 182 ~~~~~~~------~~l~~~l--~~k~~LlVlDdv 207 (835)
....... -.+.+.+ +++.+|+++||+
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhh
Confidence 1211111 1122222 689999999998
No 309
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.015 Score=52.67 Aligned_cols=44 Identities=20% Similarity=0.450 Sum_probs=34.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 175 (835)
+|.|-|++|.||||+|+.++++. .-.| | +...++++|++..++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999987 1111 1 3347889999988765
No 310
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.71 E-value=0.059 Score=54.47 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC----------------
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---------------- 178 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 178 (835)
.-+++.|.|.+|+|||+||.++.... ...=..++|++..+. ..++.+++ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 45799999999999999999986654 123456888888664 34555543 233321100
Q ss_pred --CCCCCHHHHHHHHHHHhcC-CcEEEEEcccC
Q 003265 179 --WKSRSAEEKALDIFRSLRG-KRIVLLLDDIW 208 (835)
Q Consensus 179 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 208 (835)
......+.....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 55689999974
No 311
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.70 E-value=0.0088 Score=53.95 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998873
No 312
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.67 E-value=0.031 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 313
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.66 E-value=0.082 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|.|+.|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999887
No 314
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.072 Score=60.13 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=60.5
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
++=|-++.+.+|.+-+.- ...+-|.++|++|.|||-+|++|+..+ . .-|++|-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP----- 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH-----
Confidence 455888888888877642 135578899999999999999999987 2 345555443
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWE 209 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 209 (835)
+++..-- ..+.+...+.+.++-..++++|+||++++
T Consensus 740 ---ELLNMYV-------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYV-------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHh-------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2222211 11233333334444466999999999975
No 315
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.60 E-value=0.034 Score=53.55 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEE---ecCccCHHHH------HHHHHHHhCCCCC---CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV---VSKDLRLEKL------QEDIGKKIGLVGD---SWKSR 182 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~~---~~~~~ 182 (835)
+-.+++|+|+.|.|||||++.++... ......+++. +.. .+.... ..++++.++.... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45699999999999999999998865 1223334432 211 111111 1124455443210 01111
Q ss_pred -CHHHHHHHHHHHhcCCcEEEEEcccCCcc---cccccccCCCCCCCC-CcEEEEEccchhh
Q 003265 183 -SAEEKALDIFRSLRGKRIVLLLDDIWERV---DLTKVGVPLPGPQNT-TSKVVFTTRFIDV 239 (835)
Q Consensus 183 -~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~-~s~IivTtR~~~v 239 (835)
..+...-.+.+.+...+-++++|+.-..- ..+.+...+...... +.-||++|.+...
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 22333344666777888999999974322 222222222211112 5567777776554
No 316
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.58 E-value=0.085 Score=54.44 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998876655
No 317
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.57 E-value=0.02 Score=62.59 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+....
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 6899999999998887654 367799999999999999999876
No 318
>PRK07667 uridine kinase; Provisional
Probab=95.56 E-value=0.018 Score=56.09 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=29.5
Q ss_pred HHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 104 LEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 104 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+.|.+.+.. ....+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455566654 345799999999999999999999887
No 319
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.56 E-value=0.39 Score=50.50 Aligned_cols=49 Identities=22% Similarity=0.163 Sum_probs=35.1
Q ss_pred eEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 248 KFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 248 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
.+++++++.+|+..++.-.....-.......+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877654433222333456677777789999654
No 320
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.55 E-value=0.063 Score=50.91 Aligned_cols=125 Identities=17% Similarity=0.170 Sum_probs=64.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC--C---CeEEEEEecCccC--HHHHHHHHHHHhCCCCCCCCCCCHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTN--F---DCVIWVVVSKDLR--LEKLQEDIGKKIGLVGDSWKSRSAEEK 187 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f---~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 187 (835)
+-.+++|+|+.|.|||||++.+........+. + ..+.++ .+... ...+.+.+.-. ... .-...+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 45689999999999999999998875211111 1 112222 22221 11233333210 110 11223334
Q ss_pred HHHHHHHhcCCcEEEEEcccCCccc---ccccccCCCCCCCCCcEEEEEccchhhhhccCCCceEEe
Q 003265 188 ALDIFRSLRGKRIVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRFIDVCGSMEADRKFLV 251 (835)
Q Consensus 188 ~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~~~~~~~l 251 (835)
.-.+.+.+..++=++++|+--..-+ ...+...+. .. +..||++|.+..... ..++.+.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 4456667777888899999743322 222222332 11 345777777665543 23444444
No 321
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.54 E-value=0.042 Score=55.59 Aligned_cols=95 Identities=16% Similarity=0.236 Sum_probs=58.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhccc--CCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCC-----CCCCCCCHH
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLE--SPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVG-----DSWKSRSAE 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~ 185 (835)
..-..++|.|..|+|||+|+..+.++. . .++.-+.++++-+.+.. ++.++..++...-.... ...++....
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~-~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQA-GVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhh-hccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 345678999999999999999988875 2 12335678888887754 56677776665422111 000111111
Q ss_pred -----HHHHHHHHHh---cCCcEEEEEcccCC
Q 003265 186 -----EKALDIFRSL---RGKRIVLLLDDIWE 209 (835)
Q Consensus 186 -----~~~~~l~~~l---~~k~~LlVlDdv~~ 209 (835)
...-.+.+++ .++++|+++||+-.
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1122234444 37899999999843
No 322
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.54 E-value=1.1 Score=46.93 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKL 164 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 164 (835)
.++=..+....++..+.. .+.|.|.|++|+||||+|+.++... ... .+.|.++...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhc
Confidence 344344445556666644 3468999999999999999999987 222 234555554444333
No 323
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.53 E-value=0.017 Score=54.59 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc--cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIF 192 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 192 (835)
+-.+++|+|+.|.|||||++.++... ......+++.-... .+..+. ..+.++... .-...+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHH
Confidence 45689999999999999999998765 22334444432111 111111 111121110 1112233344466
Q ss_pred HHhcCCcEEEEEcccCCccc---ccccccCCCCCCCCCcEEEEEccchhh
Q 003265 193 RSLRGKRIVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRFIDV 239 (835)
Q Consensus 193 ~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~IivTtR~~~v 239 (835)
+.+-.++-++++|+.-..-+ ...+...+......+.-||++|.+...
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 67777888999999743322 222222222111235667777777553
No 324
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.086 Score=58.30 Aligned_cols=89 Identities=24% Similarity=0.324 Sum_probs=46.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
...+|+|+|++|+||||++..++... ........+..++.... ....+.+......++.... ...+...+...+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l-a~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~- 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF-AAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE- 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-
Confidence 45799999999999999999988765 22222234555544221 1122223333333332211 1122333333333
Q ss_pred HhcCCcEEEEEcccC
Q 003265 194 SLRGKRIVLLLDDIW 208 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~ 208 (835)
.+. ..=+|++|..-
T Consensus 425 ~l~-~~DLVLIDTaG 438 (559)
T PRK12727 425 RLR-DYKLVLIDTAG 438 (559)
T ss_pred Hhc-cCCEEEecCCC
Confidence 333 34588888873
No 325
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.52 E-value=0.023 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.586 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 445699999999999999999998765
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.51 E-value=0.024 Score=49.61 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE-------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|..-..+.+++.+.+ +..-|++.+|+.|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 577877666666666643 345689999999999999999998884
No 327
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.50 E-value=0.14 Score=53.34 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++-|+|+.|+||||||..+.... ...-..++||.....++..- ++.++...+. ......++....+
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 35799999999999999999888776 22346789999877766533 3334432211 0123455666666
Q ss_pred HHHhcC-CcEEEEEcccCC
Q 003265 192 FRSLRG-KRIVLLLDDIWE 209 (835)
Q Consensus 192 ~~~l~~-k~~LlVlDdv~~ 209 (835)
.+.++. .--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 666654 345889999854
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.49 E-value=0.08 Score=54.45 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCH--HHHHHHHHHHhCCCCC-CCCCCCHHHH-HH
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL--EKLQEDIGKKIGLVGD-SWKSRSAEEK-AL 189 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~-~~~~~~~~~~-~~ 189 (835)
.+.+++.++|++|+||||++..++... . ..-..+..+.+. .+.. .+-+...++..+.+.- .....+.... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 346799999999999999999998877 2 222345555543 2322 2333334444442210 0011222222 23
Q ss_pred HHHHHhcCCcEEEEEccc
Q 003265 190 DIFRSLRGKRIVLLLDDI 207 (835)
Q Consensus 190 ~l~~~l~~k~~LlVlDdv 207 (835)
.+.....+..=++++|-.
T Consensus 146 ~l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHHCCCCEEEEeCC
Confidence 344444444457888886
No 329
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.48 E-value=0.012 Score=46.22 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|+|.|..|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 330
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.48 E-value=0.081 Score=54.11 Aligned_cols=126 Identities=17% Similarity=0.080 Sum_probs=67.0
Q ss_pred HHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC-CCCC----
Q 003265 105 EQVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL-VGDS---- 178 (835)
Q Consensus 105 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~---- 178 (835)
+.++..+.+ .....++|+|+.|.|||||++.+.... . .....+++.-.+-... +-..+++..... ++..
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~---~-~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL---S-TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc---C-CCCceEEECCEEeecc-hhHHHHHHHhccccccccccc
Confidence 344444443 445789999999999999999999876 1 2223333321110000 111233222211 1110
Q ss_pred CCCCCHHHHHHHHHHHhc-CCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhh
Q 003265 179 WKSRSAEEKALDIFRSLR-GKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDV 239 (835)
Q Consensus 179 ~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v 239 (835)
.+..+.......+...+. ..+=++++|++-....+..+...+ ..|..||+||....+
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHH
Confidence 011111112333444443 588899999987665555554433 246789999987655
No 331
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.47 E-value=0.096 Score=55.52 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
...++-|+|.+|+|||+|+..++-.. ... +.-..++||+....+..+.+ .+|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 45788899999999999998877543 111 12237999999998887776 455666654
No 332
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.085 Score=55.49 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=57.7
Q ss_pred HHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCC
Q 003265 106 QVWTCLVEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRS 183 (835)
Q Consensus 106 ~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 183 (835)
++-+.|..+ .-.+|.|-|.+|||||||.-+++.+.. ..- .+++|+-.+... -.+--++.++...+. -..-
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~---QiklRA~RL~~~~~~-l~l~ 152 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQ---QIKLRADRLGLPTNN-LYLL 152 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHH---HHHHHHHHhCCCccc-eEEe
Confidence 444444442 456899999999999999999999982 222 788887655432 222334555543321 1111
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEcccC
Q 003265 184 AEEKALDIFRSL-RGKRIVLLLDDIW 208 (835)
Q Consensus 184 ~~~~~~~l~~~l-~~k~~LlVlDdv~ 208 (835)
.+...+.|.+.+ +.++-++|+|-+.
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 222233344444 3688899999984
No 333
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.42 E-value=0.024 Score=58.23 Aligned_cols=88 Identities=24% Similarity=0.377 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCH
Q 003265 105 EQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSA 184 (835)
Q Consensus 105 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 184 (835)
..+++.+...+ +-+.++|+.|+|||++++...... . ...+ ...-++.+...+...+++.+-+.+......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE------
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC------
Confidence 44566666554 456799999999999999988765 1 2222 244456666555544443322222111000
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccC
Q 003265 185 EEKALDIFRSLRGKRIVLLLDDIW 208 (835)
Q Consensus 185 ~~~~~~l~~~l~~k~~LlVlDdv~ 208 (835)
...--.+|+.++++||+-
T Consensus 93 ------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 ------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EEEEESSSEEEEEEETTT
T ss_pred ------CCCCCCCcEEEEEecccC
Confidence 000013688899999984
No 334
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.40 E-value=0.065 Score=51.10 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=63.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc--cCHHHHHHHHHHHhCCCC-C-CCCCCC------
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD--LRLEKLQEDIGKKIGLVG-D-SWKSRS------ 183 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~-~-~~~~~~------ 183 (835)
..-.+++|+|+.|.|||||++.++.-. . .....+++.-... ..... ..+.++... + .....+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~-~---~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lL 97 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY-D---PTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENIL 97 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC-C---CCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhh
Confidence 345699999999999999999998875 1 2233333321110 01111 111111100 0 000001
Q ss_pred --HHHHHHHHHHHhcCCcEEEEEcccCCccc---ccccccCCCCCCCCCcEEEEEccchhhhhccCCCceEEe
Q 003265 184 --AEEKALDIFRSLRGKRIVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRFIDVCGSMEADRKFLV 251 (835)
Q Consensus 184 --~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~~~~~~~l 251 (835)
.+...-.+.+.+..++=++++|+-...-+ ...+...+. ....+..||++|.+.+.... .++.+.+
T Consensus 98 S~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR-ALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11222335566777888999999754322 222222222 11124667888877665543 3444444
No 335
>PRK08233 hypothetical protein; Provisional
Probab=95.38 E-value=0.014 Score=56.34 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999877
No 336
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.022 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.|.|++|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 337
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.38 E-value=0.058 Score=49.71 Aligned_cols=103 Identities=23% Similarity=0.270 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
.-.+++|+|..|.|||||++.+.... . .....+++.-.. .++... .-...+...-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL-E---PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC-C---CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 45689999999999999999998865 1 223334432100 000000 001122333345666
Q ss_pred hcCCcEEEEEcccCCc---ccccccccCCCCCCCCCcEEEEEccchhhh
Q 003265 195 LRGKRIVLLLDDIWER---VDLTKVGVPLPGPQNTTSKVVFTTRFIDVC 240 (835)
Q Consensus 195 l~~k~~LlVlDdv~~~---~~~~~l~~~l~~~~~~~s~IivTtR~~~v~ 240 (835)
+..++-++++|+.-.. .....+...+. .. +..||++|.+.+..
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~ 130 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFL 130 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHH
Confidence 6777889999997432 22233333332 11 23577777665543
No 338
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.35 E-value=0.1 Score=55.34 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=41.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
...++-|+|.+|+|||+++.+++... ... ..-..++||+....++...+. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 45788999999999999999988765 211 111379999998888777654 4444444
No 339
>PRK04328 hypothetical protein; Provisional
Probab=95.35 E-value=0.072 Score=54.24 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL 159 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 159 (835)
.-.++.|.|.+|.|||+||.++.... ...-..++|++....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCCH
Confidence 45789999999999999999877654 1234567888876643
No 340
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.35 E-value=0.071 Score=52.30 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccCCc---ccccccccCCCC-CCCCCcEEEEEccchhhhhccCCCceEEec
Q 003265 185 EEKALDIFRSLRGKRIVLLLDDIWER---VDLTKVGVPLPG-PQNTTSKVVFTTRFIDVCGSMEADRKFLVA 252 (835)
Q Consensus 185 ~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~l~~~l~~-~~~~~s~IivTtR~~~v~~~~~~~~~~~l~ 252 (835)
++..-.+.+.|..++-+|+-|+--.. ..-+.+...+.. ....|.-||+.|.+..++..+ .+.+.+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 34445577888899999999986321 111122222210 234577899999999998753 4555543
No 341
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.063 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 342
>PTZ00301 uridine kinase; Provisional
Probab=95.29 E-value=0.016 Score=56.95 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|.+|.||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 343
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.29 E-value=0.035 Score=49.68 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 102 SQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 102 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++.+++-+.|.. ....+|.+.|.-|.||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444443 344699999999999999999999987
No 344
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.28 E-value=0.016 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999876
No 345
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.27 E-value=0.04 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|+|++|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 346
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.32 Score=55.36 Aligned_cols=134 Identities=18% Similarity=0.155 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
..+.+.++|++|.|||.||+++++.. ...|-.+. .. ++.... ...........+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~-----~~--------~l~sk~-------vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVK-----GS--------ELLSKW-------VGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEee-----CH--------HHhccc-------cchHHHHHHHHHHHH
Confidence 45689999999999999999999976 34443221 11 111111 111222223333344
Q ss_pred hcCCcEEEEEcccCCcccc-------------cccccCCCC-CCCCCcEEEEEccchhhhh-c----cCCCceEEeccCC
Q 003265 195 LRGKRIVLLLDDIWERVDL-------------TKVGVPLPG-PQNTTSKVVFTTRFIDVCG-S----MEADRKFLVACLS 255 (835)
Q Consensus 195 l~~k~~LlVlDdv~~~~~~-------------~~l~~~l~~-~~~~~s~IivTtR~~~v~~-~----~~~~~~~~l~~L~ 255 (835)
.+..+..|++|+++....+ .++...+.. ....+..||-||-...... . ..-...+.+.+-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 4678999999999642111 112222210 1223334455554433221 1 1235678899999
Q ss_pred hHHHHHHHHHHhCCCC
Q 003265 256 EKDAWELFREKVGEET 271 (835)
Q Consensus 256 ~~~~~~lf~~~~~~~~ 271 (835)
.++..+.|..+.....
T Consensus 412 ~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 412 LEERLEIFKIHLRDKK 427 (494)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999999887433
No 347
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.25 E-value=0.11 Score=52.23 Aligned_cols=41 Identities=29% Similarity=0.348 Sum_probs=30.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 158 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 158 (835)
.-.++.|.|.+|+||||+|.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457999999999999999998776541 22346788876443
No 348
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.24 E-value=0.08 Score=49.70 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=62.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEE---EEEecCccCHHHHHHHHHHHhCC--CCC--CCCCCC-----
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVI---WVVVSKDLRLEKLQEDIGKKIGL--VGD--SWKSRS----- 183 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~---wv~~s~~~~~~~~~~~i~~~l~~--~~~--~~~~~~----- 183 (835)
...|-|++..|.||||.|-.++-+.. ...+. ++ |+...........+..+ .+.. ... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~-v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKK-VGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCe-EEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 46888999999999999998887761 22333 32 33333223333444433 1110 000 011111
Q ss_pred --HHHHHHHHHHHhcCCcE-EEEEcccCC-----cccccccccCCCCCCCCCcEEEEEccch
Q 003265 184 --AEEKALDIFRSLRGKRI-VLLLDDIWE-----RVDLTKVGVPLPGPQNTTSKVVFTTRFI 237 (835)
Q Consensus 184 --~~~~~~~l~~~l~~k~~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~~s~IivTtR~~ 237 (835)
........++.+...+| +||||.+-. ..+.+++...+. ....+.-||+|-|+.
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCC
Confidence 11222333444544554 999999842 233344544444 455677999999975
No 349
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.63 Score=48.44 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=91.2
Q ss_pred HHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhccc-------CCCCCCeEEEEEe-cCccCHHHHHHHHHHHhCCC
Q 003265 105 EQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLE-------SPTNFDCVIWVVV-SKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 105 ~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~ 175 (835)
+.+.+.+..+.. ++..++|..|+||+++|+.+.+..-. ...+-+...++.. .....++++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 445555555544 56669999999999999999887511 1112222333321 1111222222 222222111
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEcc-chhhhhc-cCCCceEEe
Q 003265 176 GDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTR-FIDVCGS-MEADRKFLV 251 (835)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR-~~~v~~~-~~~~~~~~l 251 (835)
. .-.+.+=++|+|++... .....+...+. .....+.+|++|. ...+... .+.+..+++
T Consensus 85 ~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 85 S-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred C-----------------cccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 0 01146778999998643 23445555555 4555666666554 3444332 344678999
Q ss_pred ccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 252 ACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 252 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.++++++..+.+.+. +. + .+.++.++...+|.=-|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~~-----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-NK-----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-CC-----C---hhHHHHHHHHcCCHHHHHHH
Confidence 999999999887664 21 1 24456666666663234443
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.24 E-value=0.076 Score=57.69 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.++|..|+||||++..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999988776
No 351
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.24 E-value=0.03 Score=61.80 Aligned_cols=98 Identities=23% Similarity=0.305 Sum_probs=53.7
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEE-EEEecCcc-CHHHHHHHHHHHhCCCCCCCCCCC
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVI-WVVVSKDL-RLEKLQEDIGKKIGLVGDSWKSRS 183 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 183 (835)
+++++.. ..-.-..|+|++|+|||||++.+++... ..+-++.+ .+-|.+.. .+.++.+.+-..+-... .+...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT--~D~p~ 481 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAST--FDRPP 481 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEEC--CCCCH
Confidence 4444443 3445788999999999999999999762 23334443 34455443 33344333311111111 01111
Q ss_pred -----HHHHHHHHHHHh--cCCcEEEEEcccC
Q 003265 184 -----AEEKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 184 -----~~~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.....-.+.+.+ .++.+||++|++-
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 112222233444 6899999999984
No 352
>PRK05439 pantothenate kinase; Provisional
Probab=95.23 E-value=0.14 Score=53.17 Aligned_cols=83 Identities=18% Similarity=0.048 Sum_probs=44.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
...-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-.-....+.. ..+....+-....+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 456799999999999999999998865 21111123333443332222222211 111111111234556666666666
Q ss_pred HhcCCc
Q 003265 194 SLRGKR 199 (835)
Q Consensus 194 ~l~~k~ 199 (835)
..+++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666665
No 353
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.22 E-value=0.018 Score=57.08 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 354
>PRK14974 cell division protein FtsY; Provisional
Probab=95.21 E-value=0.15 Score=53.96 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc--CHHHHHHHHHHHhCCCCCC-CCCCCHHHHH-HH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL--RLEKLQEDIGKKIGLVGDS-WKSRSAEEKA-LD 190 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 190 (835)
...+|.++|++|+||||++..++... . ...+. ++.+.. +.+ ...+.++..+..++.+... ....+....+ ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~~-V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGFS-VVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCe-EEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 35799999999999999998888776 2 22332 333432 322 2334455566666543211 1122222222 22
Q ss_pred HHHHhcCCcEEEEEcccC
Q 003265 191 IFRSLRGKRIVLLLDDIW 208 (835)
Q Consensus 191 l~~~l~~k~~LlVlDdv~ 208 (835)
+........=++++|-.-
T Consensus 215 i~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHHhCCCCEEEEECCC
Confidence 222222222388999873
No 355
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.036 Score=52.99 Aligned_cols=120 Identities=21% Similarity=0.276 Sum_probs=60.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC-CCC-C-CCCC--------C
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL-VGD-S-WKSR--------S 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~-~-~~~~--------~ 183 (835)
.-.+++|+|+.|.|||||++.++... . .....+++.-....... ..+.+.++. .++ . .... +
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~-~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL-K---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-C---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 45689999999999999999998865 1 22334443211100000 111111111 000 0 0111 1
Q ss_pred -HHHHHHHHHHHhcCCcEEEEEcccCCccc---ccccccCCCCCCCCCcEEEEEccchhhhh
Q 003265 184 -AEEKALDIFRSLRGKRIVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRFIDVCG 241 (835)
Q Consensus 184 -~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~IivTtR~~~v~~ 241 (835)
.+...-.+.+.+..++=++++|+.-..-| ...+...+......|.-||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 12223346677778889999999754322 22222222211122567888887765443
No 356
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.13 Score=60.42 Aligned_cols=100 Identities=20% Similarity=0.309 Sum_probs=67.7
Q ss_pred cccchHHHHHHHHHHhhc------C--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------E--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQED 167 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 167 (835)
.++|.++.+..|-+.+.. + ......+.|+.|+|||-||++++... -+..+..+-|+.+. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh-
Confidence 456777777777777753 2 35578899999999999999999987 55666666665544 222
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEcccCC
Q 003265 168 IGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRI-VLLLDDIWE 209 (835)
Q Consensus 168 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 209 (835)
+.+.++.+ +..-..+....|.+.++.++| +|+||||..
T Consensus 633 vskligsp----~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 VSKLIGSP----PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hhhccCCC----cccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 33333332 222333445577888888887 788899964
No 357
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.19 E-value=0.017 Score=57.52 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|.|.|++|+||||+|+.++..+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999886
No 358
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.18 E-value=0.097 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 359
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.18 E-value=0.042 Score=50.36 Aligned_cols=42 Identities=33% Similarity=0.324 Sum_probs=31.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH
Q 003265 119 IGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 166 (835)
|.++|++|+|||+||+.+++.. .. ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hc---ceEEEEecccccccccee
Confidence 6799999999999999999987 11 234467777777776654
No 360
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.18 E-value=0.087 Score=53.72 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH---HhCCCCCCCCCCCHHH---HH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK---KIGLVGDSWKSRSAEE---KA 188 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~---~l~~~~~~~~~~~~~~---~~ 188 (835)
.-+++=|+|+.|.||||+|.+++-.. ...-..++|++.-..+++..+..--.. .+... ...+.++ .+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~----~~~~~e~q~~i~ 131 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVS----QPDTGEQQLEIA 131 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEe----cCCCHHHHHHHH
Confidence 45788999999999999999877765 334448899999888887665432222 12111 1223333 33
Q ss_pred HHHHHHhcCCcEEEEEccc
Q 003265 189 LDIFRSLRGKRIVLLLDDI 207 (835)
Q Consensus 189 ~~l~~~l~~k~~LlVlDdv 207 (835)
..+......+--|+|+|-+
T Consensus 132 ~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 132 EKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHHhccCCCCEEEEecC
Confidence 3333333444569999997
No 361
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.07 Score=52.19 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=54.0
Q ss_pred cchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHH
Q 003265 98 VGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKL 164 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 164 (835)
-|=.++++++.+...- +..+-|.++|++|.|||-+|++|+|+. ...| +.|-.
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dacf-----irvig------- 244 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DACF-----IRVIG------- 244 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---CceE-----Eeehh-------
Confidence 3556677777665431 456778899999999999999999986 3333 32211
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC-CcEEEEEcccC
Q 003265 165 QEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRG-KRIVLLLDDIW 208 (835)
Q Consensus 165 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 208 (835)
.++.+..-. .......++.+.-+. |-++|+||.++
T Consensus 245 -selvqkyvg--------egarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 245 -SELVQKYVG--------EGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred -HHHHHHHhh--------hhHHHHHHHHHHhcccceEEEEeeccc
Confidence 122222111 123344555555555 55899999985
No 362
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.16 E-value=0.083 Score=51.56 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-------CCeEEEEEecCcc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTN-------FDCVIWVVVSKDL 159 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-------f~~~~wv~~s~~~ 159 (835)
-.++.|.|++|+||||++..+.......... -..++|+......
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 3588999999999999999988877321111 2368888776653
No 363
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.15 E-value=0.048 Score=58.40 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhhcC--------------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEE--------------SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.+..+.-.+... ..+.|.++|++|+|||++|+.++...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 6789998888876555421 23678899999999999999999987
No 364
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.15 E-value=0.042 Score=54.53 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 103 QLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 103 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
+..++++.+.. .+..+|+|.|++|+|||||+..+...+ ...++--.++-|.-|.+++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCC
Confidence 44556666654 467899999999999999999998888 3333333455555555554
No 365
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.0046 Score=58.16 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=33.0
Q ss_pred ccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCC--CchhhccCCccEEeeec
Q 003265 653 FADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKD--LTFLVFAPSLKSLSLYG 723 (835)
Q Consensus 653 l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~ 723 (835)
+..++.|+.|.+..|..+.+..++.+. +-.++|+.|+|++|+.+++ +.++..+++|+.|.|.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 344455555555555555544444444 2355566666666655554 33455555555555544
No 366
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.095 Score=56.48 Aligned_cols=90 Identities=19% Similarity=0.200 Sum_probs=51.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIF 192 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 192 (835)
..++|.++|+.|+||||.+..++..+.... ..-..+..+++... ......++..++.++.+-. ...........+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999988762111 12224455554432 1223335555665655421 2233344444443
Q ss_pred HHhcCCcEEEEEcccC
Q 003265 193 RSLRGKRIVLLLDDIW 208 (835)
Q Consensus 193 ~~l~~k~~LlVlDdv~ 208 (835)
.. .+.-++++|...
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 32 345688899973
No 367
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.12 E-value=0.053 Score=59.00 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCC----CCCCCCCHH-----
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVG----DSWKSRSAE----- 185 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~----- 185 (835)
.-..++|+|..|+|||||++.+.... .....++++...+..++.++....+....... .+.+.....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 44689999999999999999887654 22234455443344455555444433321100 000111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEcccC
Q 003265 186 EKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
...-.+.+++ +++.+|+++||+-
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchH
Confidence 1122233343 5899999999984
No 368
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.32 Score=48.56 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 97 VVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 97 ~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
+-|-+.++++|.+...- ...+-|.++|.+|.|||-||++|+|+. ...|- +-
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFl-------------Rv 250 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFL-------------RV 250 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhh-------------hh
Confidence 34788888888877641 245678899999999999999999986 44442 11
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIW 208 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 208 (835)
+-.++++.-.. +...+.+.+.+.- ..-+.++++|.++
T Consensus 251 vGseLiQkylG--------dGpklvRqlF~vA~e~apSIvFiDEId 288 (440)
T KOG0726|consen 251 VGSELIQKYLG--------DGPKLVRELFRVAEEHAPSIVFIDEID 288 (440)
T ss_pred hhHHHHHHHhc--------cchHHHHHHHHHHHhcCCceEEeehhh
Confidence 22223322211 1223444555444 4567888899885
No 369
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.034 Score=53.44 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998764
No 370
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.05 E-value=0.048 Score=55.88 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC
Q 003265 98 VGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD 177 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 177 (835)
.|...+..+.+..+......+|.|.|+.|.||||+++.+.+.. ...-..++ .+.++.... +.. ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~ii--tiEdp~E~~--~~~-~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNII--TVEDPVEYQ--IPG-INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEE--EECCCceec--CCC-ceEEEeC--
Confidence 4554444444444444555789999999999999999887765 11111222 232221110 000 0111111
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccc
Q 003265 178 SWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTK 215 (835)
Q Consensus 178 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 215 (835)
..........++..++..+=.++++++.+......
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 11112345566778888899999999977655443
No 371
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.04 Score=49.11 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL 195 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 195 (835)
.+-|.|.|.+|+||||++..++... .| -|+++|+-..-..++..-=.+.. ...-+.+.+...|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~~---~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----GL---EYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----CC---ceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHH
Confidence 4568899999999999999999654 22 36776664333333222211111 13345566666666666
Q ss_pred cCC
Q 003265 196 RGK 198 (835)
Q Consensus 196 ~~k 198 (835)
.+.
T Consensus 74 ~~G 76 (176)
T KOG3347|consen 74 IEG 76 (176)
T ss_pred hcC
Confidence 443
No 372
>PRK14527 adenylate kinase; Provisional
Probab=95.04 E-value=0.039 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.|+|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 373
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.04 E-value=0.014 Score=51.33 Aligned_cols=27 Identities=37% Similarity=0.543 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcccCCCCCC
Q 003265 119 IGLYGMGGVGKTTLLTHINNKFLESPTNFD 148 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 148 (835)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6799999999999999999987 56664
No 374
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.03 E-value=0.021 Score=55.58 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 375
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.00 E-value=0.078 Score=53.70 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCeE-EEEEecCcc-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCV-IWVVVSKDL-RLEKLQEDIGKKIGLVG-----DSWKSRSAEE 186 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 186 (835)
.-.-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+.. .+.++.+.+...-.... ...++.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4467899999999999996 5666543 22333 666666553 56677776664322111 0001111111
Q ss_pred -----HHHHHHHHh--cCCcEEEEEcccCCc-cccccc
Q 003265 187 -----KALDIFRSL--RGKRIVLLLDDIWER-VDLTKV 216 (835)
Q Consensus 187 -----~~~~l~~~l--~~k~~LlVlDdv~~~-~~~~~l 216 (835)
.+-.+.+++ +++.+|+|+||+-.. ..++++
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 112223333 589999999998432 334444
No 376
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.97 E-value=0.058 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 567899999999999999999877
No 377
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.14 Score=53.03 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC
Q 003265 96 KVVGLQSQLEQVWTCLVE--------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD 148 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 148 (835)
++-|-+..++++.+...= ...+-|.++|++|.|||-||++++.+. ...|-
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fI 156 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFI 156 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcc
Confidence 345667777776665420 245678999999999999999999987 56664
No 378
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.96 E-value=0.018 Score=50.03 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|-|+|++|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988876
No 379
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.12 Score=51.53 Aligned_cols=90 Identities=23% Similarity=0.329 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHhh---------c---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---------E---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.+.|-+..++.|.+... . ..-+-|.++|++|.||+.||++|+... .. -|.+||..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS----- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS----- 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH-----
Confidence 45688888888877652 1 235789999999999999999999876 12 23344432
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWE 209 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 209 (835)
+++.... ...+.++..|.+.- .+|+-+|++|.|+.
T Consensus 201 ---DLvSKWm--------GESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKWM--------GESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHHh--------ccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1121111 12345566666655 46899999999963
No 380
>PRK03839 putative kinase; Provisional
Probab=94.96 E-value=0.021 Score=55.11 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.|.|++|+||||+++.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 381
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.95 E-value=0.049 Score=59.71 Aligned_cols=93 Identities=20% Similarity=0.304 Sum_probs=58.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHH---
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAE--- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 185 (835)
..-..++|+|.+|+|||||+.++.... . +.+-+.++++-+.+.. .+.++...+...-..... .....+..
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 345689999999999999999988876 2 2356777888776554 566677766553221110 00111221
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEcccC
Q 003265 186 ---EKALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ---~~~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
..+-.+.+++ .++.+|+++|++-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1122344444 3899999999993
No 382
>PF13245 AAA_19: Part of AAA domain
Probab=94.95 E-value=0.073 Score=42.62 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999995554444433
No 383
>PRK08149 ATP synthase SpaL; Validated
Probab=94.92 E-value=0.092 Score=57.02 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=52.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCH---
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVG-----DSWKSRSA--- 184 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~--- 184 (835)
..-..++|+|..|+|||||++.++... .-+.++...+... .++.++..+......... ...+....
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 345689999999999999999998764 1233334444333 355666666665432211 00011111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEcccC
Q 003265 185 --EEKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 185 --~~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
...+..+.+++ ++|++|+++||+-
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 11222233444 6899999999984
No 384
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.14 Score=54.31 Aligned_cols=89 Identities=20% Similarity=0.139 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
+.+++.|+|+.|+||||++..++... ... . ..+.+|++... ....+-++..++.++.+.. ...+..++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~-g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ-N-RTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc-C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 46799999999999999999988766 222 2 34566665432 2234455566666554321 22345555444443
Q ss_pred Hhc-CCcEEEEEcccC
Q 003265 194 SLR-GKRIVLLLDDIW 208 (835)
Q Consensus 194 ~l~-~k~~LlVlDdv~ 208 (835)
.-. +..=+|++|-.-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 321 344578888873
No 385
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.89 E-value=0.043 Score=55.19 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=43.7
Q ss_pred HHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH
Q 003265 105 EQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 105 ~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 166 (835)
.+++..+.. +...+|+|.|.||+|||||.-.+...+ ...++--.++-|.-|.+++--.++.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccc
Confidence 345555543 567799999999999999999998888 4555655667776666665444433
No 386
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.88 E-value=0.051 Score=62.38 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=56.1
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.++.++.|...+... +.+.++|++|+||||+|+.+.+... ...++..+|..- ...+...+++.++.+++.
T Consensus 32 ~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 32 QVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 6789999888888777655 4788999999999999999998862 345677888755 333666777777766543
No 387
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.87 E-value=0.027 Score=55.70 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcc-cCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFL-ESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW-KSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 193 (835)
.+++.|+|+.|.||||+.+.+..... ...+.| .|. .. .. .....++...+.....-. ...+......++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~---v~a--~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSF---VPA--DS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCe---eEc--CC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHH
Confidence 48899999999999999999874320 011221 111 00 00 001112222222111000 01122222333333
Q ss_pred Hh--cCCcEEEEEcccCCcccc-------cccccCCCCCCCCCcEEEEEccchhhhhcc
Q 003265 194 SL--RGKRIVLLLDDIWERVDL-------TKVGVPLPGPQNTTSKVVFTTRFIDVCGSM 243 (835)
Q Consensus 194 ~l--~~k~~LlVlDdv~~~~~~-------~~l~~~l~~~~~~~s~IivTtR~~~v~~~~ 243 (835)
.+ ..++.|++||+.-...+. ..+...+...+..+..+|+||...+++...
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 33 468899999998543221 112222221112345799999988775543
No 388
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.85 E-value=0.083 Score=57.46 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHH---
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAE--- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 185 (835)
..-..++|+|..|+|||||++.++... ..+.++++-+.+.. .+.++....+..-+.... ...+....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 355689999999999999999998765 12445556565543 455665555443221110 00111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEcccC
Q 003265 186 ---EKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ---~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
..+-.+.+++ +++.+|+++||+-
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1122233444 6899999999984
No 389
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.85 E-value=0.072 Score=49.39 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999886
No 390
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.83 E-value=0.063 Score=58.15 Aligned_cols=90 Identities=22% Similarity=0.297 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHHH--
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAEE-- 186 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~-- 186 (835)
..-..++|+|..|+|||||++.+.... ..+.++.+-+.+.. .+.++.+.++..-+.... ...+.....
T Consensus 160 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 160 GKGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred cCCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 345689999999999999999998654 22456666665554 456666665544221110 001111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEcccC
Q 003265 187 ----KALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 187 ----~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.+-.+.+++ +++.+|+++||+-
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 112233444 6899999999984
No 391
>PRK00625 shikimate kinase; Provisional
Probab=94.82 E-value=0.023 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.++|++|+||||+++.++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 392
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.82 E-value=0.062 Score=54.01 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC-CCeEEEEEecCccCHHHHHHHHHHHhCCCC-------------CCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTN-FDCVIWVVVSKDLRLEKLQEDIGKKIGLVG-------------DSWK 180 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------------~~~~ 180 (835)
.-.++.|.|.+|+|||+|+.++.... ... =..++||+...+. .++.+.+. .++..- ....
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 45799999999999999999876554 122 3457888876653 44444432 332110 0001
Q ss_pred -----CCCHHHHHHHHHHHhcC-CcEEEEEccc
Q 003265 181 -----SRSAEEKALDIFRSLRG-KRIVLLLDDI 207 (835)
Q Consensus 181 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv 207 (835)
..+.......+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 35677777777777754 5579999997
No 393
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.036 Score=52.03 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=60.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
+-.+++|+|..|.|||||++.+.... ......+++........ ......+.++... .-...+...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~---qlS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVP---QLSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEe---eCCHHHHHHHHHHHH
Confidence 34699999999999999999998865 22344455432211110 0011111122110 011123333445666
Q ss_pred hcCCcEEEEEcccCCccc---ccccccCCCCCCCCCcEEEEEccchhhhh
Q 003265 195 LRGKRIVLLLDDIWERVD---LTKVGVPLPGPQNTTSKVVFTTRFIDVCG 241 (835)
Q Consensus 195 l~~k~~LlVlDdv~~~~~---~~~l~~~l~~~~~~~s~IivTtR~~~v~~ 241 (835)
+...+-++++|+.-..-+ ...+...+......+.-|+++|.+.....
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 667788999999854322 22222222101112456777777655443
No 394
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.80 E-value=0.016 Score=31.25 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=7.0
Q ss_pred cccEEeeccccccccc
Q 003265 519 SLQLFDISLTLIKELP 534 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp 534 (835)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5566666666555554
No 395
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.80 E-value=0.073 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.|+|.+|+||||+|+.++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 396
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=1 Score=50.94 Aligned_cols=90 Identities=23% Similarity=0.206 Sum_probs=55.4
Q ss_pred ccchHHHHHHHHHHhhc----------C---CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 97 VVGLQSQLEQVWTCLVE----------E---SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 97 ~vGr~~~~~~l~~~L~~----------~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
+-|..+.++.+.+.+.- . ...-|.++|++|.|||-||.+++... . .-+|+|-.+ +
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~-----~~fisvKGP----E 736 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---N-----LRFISVKGP----E 736 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---C-----eeEEEecCH----H
Confidence 44666666666555531 1 23358899999999999999998876 1 235666554 2
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWE 209 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 209 (835)
++.. -+|. +.+.....+.++-.-++++++||++++
T Consensus 737 lL~K---yIGa--------SEq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 737 LLSK---YIGA--------SEQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred HHHH---Hhcc--------cHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2222 2222 223333333444467999999999864
No 397
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.78 E-value=0.075 Score=56.99 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE--------------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.+..+..++.. ...+.|.++|++|+|||++|+.++...
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 688999998888777743 013678999999999999999999886
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.78 E-value=0.22 Score=52.85 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=47.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
+.++|.++|+.||||||-..+++.++ .....=..+..|+...- -...+-++.-++-++.+-. ...+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 47899999999999976555555555 21233345666665332 2344555555555665432 23344444444333
Q ss_pred HhcCCcEEEEEccc
Q 003265 194 SLRGKRIVLLLDDI 207 (835)
Q Consensus 194 ~l~~k~~LlVlDdv 207 (835)
+++. =+|.+|-+
T Consensus 279 -l~~~-d~ILVDTa 290 (407)
T COG1419 279 -LRDC-DVILVDTA 290 (407)
T ss_pred -hhcC-CEEEEeCC
Confidence 2333 24445555
No 399
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.77 E-value=0.085 Score=58.49 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW---KSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 191 (835)
.-.++.|.|.+|+|||||+.+++... . ..-..++|++..... .++.. -++.++...+.. ...+.+.+...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~-a--~~g~~vlYvs~Ees~--~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL-A--AAGGKVLYVSGEESA--SQIKL-RAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-H--hcCCeEEEEEccccH--HHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 45699999999999999999998876 2 223457888765432 23322 244454321110 112233333222
Q ss_pred HHHhcCCcEEEEEccc
Q 003265 192 FRSLRGKRIVLLLDDI 207 (835)
Q Consensus 192 ~~~l~~k~~LlVlDdv 207 (835)
. +.+.-++|+|.+
T Consensus 153 ~---~~~~~lVVIDSI 165 (446)
T PRK11823 153 E---EEKPDLVVIDSI 165 (446)
T ss_pred H---hhCCCEEEEech
Confidence 2 235557888886
No 400
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.74 E-value=0.073 Score=53.47 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHhhc-------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE-------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|..-.++.++..+.+ .+.-+++.+|..|+||...++.+++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 467776666777776653 345699999999999999999999987
No 401
>PRK04040 adenylate kinase; Provisional
Probab=94.74 E-value=0.028 Score=54.36 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 402
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.71 E-value=0.068 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 403
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.70 E-value=0.073 Score=53.70 Aligned_cols=66 Identities=27% Similarity=0.346 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccc----CCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 103 QLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLE----SPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 103 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
+.+.+...+.... +..|+|++|.||||++..+...... ....-+..+-++...+..+..++..+.+
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3444444443333 7889999999999877776665511 1134445555555555555555555554
No 404
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.70 E-value=0.1 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+++.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 405
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.69 E-value=0.11 Score=54.46 Aligned_cols=90 Identities=22% Similarity=0.298 Sum_probs=51.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEec-CccCHHHHHHHHHHHhCCCC-----CCCCCCCHH--
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS-KDLRLEKLQEDIGKKIGLVG-----DSWKSRSAE-- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~-- 185 (835)
..-..++|+|..|.|||||++.+.... . -+..+..-+. +..++.++.......-+... ...+.....
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~ 141 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRV 141 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHH
Confidence 445689999999999999999988765 1 2333444443 33455666665555432211 000111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEcccC
Q 003265 186 ---EKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ---~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
...-.+.+++ +++.+|+++||+-
T Consensus 142 ~~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 142 KAAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 1122233333 6899999999984
No 406
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.69 E-value=0.14 Score=55.68 Aligned_cols=91 Identities=24% Similarity=0.296 Sum_probs=51.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCC-----CCCCCCCHHH--
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVG-----DSWKSRSAEE-- 186 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-- 186 (835)
..-..++|+|..|+|||||++.+.... . ....++.....+...+.++.+..+..-+... ...+......
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNT---D-ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCC---C-CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999888765 1 1222333333334455666665544322211 0001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEcccC
Q 003265 187 ---KALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 187 ---~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.+-.+.+++ +++.+|+++||+-
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 122234444 6799999999984
No 407
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.67 E-value=0.11 Score=57.00 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
.+++.++|++|+||||++..++... .....-..+..|+....- ...+.+....+.++.+.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4689999999999999999888776 201222345666653321 122233333444443321 12233444444433
Q ss_pred hcCCcEEEEEccc
Q 003265 195 LRGKRIVLLLDDI 207 (835)
Q Consensus 195 l~~k~~LlVlDdv 207 (835)
+. ..=+|++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 22 3457888976
No 408
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.67 E-value=0.086 Score=57.64 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHHH--
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAEE-- 186 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~-- 186 (835)
..-.-++|.|.+|+|||||+..+.... .. .+-+.++++-+.+.. .+.++++++...-..... .....+...
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 345689999999999999999987765 21 222467777776554 566777777654221110 001111111
Q ss_pred ----HHHHHHHHh---cCCcEEEEEcccC
Q 003265 187 ----KALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 187 ----~~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
.+-.+.+++ +++.+|+++|++-
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 122244444 6799999999984
No 409
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.67 E-value=0.097 Score=50.41 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=68.4
Q ss_pred HHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH-----HHHHHHHHhCCCCCCCC
Q 003265 106 QVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK-----LQEDIGKKIGLVGDSWK 180 (835)
Q Consensus 106 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~-----~~~~i~~~l~~~~~~~~ 180 (835)
-+++.|-+....-..|.|++|+|||||.+.++.-.......|-..--+-+.....+.. -+..+.+.+..
T Consensus 127 ~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dV------ 200 (308)
T COG3854 127 PLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDV------ 200 (308)
T ss_pred HHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhh------
Confidence 3677777776666789999999999999999887632233453222111211111100 01111111110
Q ss_pred CCCHHHHHHHHHHHh-cCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhh
Q 003265 181 SRSAEEKALDIFRSL-RGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCG 241 (835)
Q Consensus 181 ~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~ 241 (835)
.+..-....+.... .-.+=++|+|.+-.+.+-..+...+ ..|.++|.|..-..+-.
T Consensus 201 -ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~----~~GVkli~TaHG~~ied 257 (308)
T COG3854 201 -LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL----HAGVKLITTAHGNGIED 257 (308)
T ss_pred -cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH----hcCcEEEEeeccccHHH
Confidence 11111111222222 3467799999998777766665544 45788888877655543
No 410
>PRK06217 hypothetical protein; Validated
Probab=94.65 E-value=0.053 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 411
>PRK05922 type III secretion system ATPase; Validated
Probab=94.64 E-value=0.11 Score=56.41 Aligned_cols=90 Identities=17% Similarity=0.287 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCC----CCCCCH-H--
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDS----WKSRSA-E-- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~-- 185 (835)
..-..++|+|..|+|||||++.+.... ..+....+.+.. ...+.+.+.+..........- ..+... .
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 445679999999999999999998764 123334433333 233445555554433221100 011111 1
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEcccC
Q 003265 186 ---EKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ---~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
..+-.+.+++ +++++|+++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122234444 5899999999994
No 412
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.64 E-value=0.029 Score=53.54 Aligned_cols=49 Identities=31% Similarity=0.451 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
..+|+|-||=|+||||||+.++++. . |. +.+=.+.+++=+..+..++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999998 2 22 233344555445555555443
No 413
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.63 E-value=0.053 Score=52.53 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
.|+|.|-||+||||+|..+.... ..++.++ ++-|.+..+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l-~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL-LSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH-HhcCCce-EEEEeCCCCCC
Confidence 68999999999999999966666 2223243 55566655554
No 414
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.63 E-value=0.19 Score=50.45 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDI 168 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 168 (835)
...++.|.|.+|.||||+|.++.... . +.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-L-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-H-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 35699999999999999987766654 1 122 3467776433 445666665
No 415
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.61 E-value=0.095 Score=60.15 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.++..|.|.+|.||||+++.+.....+....-...+.+..........+.+.+...
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 46889999999999999998887652211112245666665555555555555443
No 416
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.60 E-value=0.16 Score=55.55 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhcccC-----CCCCCeEEEEEecCccC-HHHHHHHHHHHhC-CCCC-----CCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLL-THINNKFLES-----PTNFDCVIWVVVSKDLR-LEKLQEDIGKKIG-LVGD-----SWKS 181 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~-~~~~-----~~~~ 181 (835)
.-.-++|.|..|+|||+|| ..+.++. .+ ...-+.++++.+.+... +.+ +...+++-+ .... ..++
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~e-i~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVAR-IHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHH-HHHHHHhcCCccceEEEEECCCC
Confidence 4457899999999999997 6667664 11 12445678888877654 334 333333322 1110 0011
Q ss_pred CCHHH-----HHHHHHHHh--cCCcEEEEEcccCC
Q 003265 182 RSAEE-----KALDIFRSL--RGKRIVLLLDDIWE 209 (835)
Q Consensus 182 ~~~~~-----~~~~l~~~l--~~k~~LlVlDdv~~ 209 (835)
..... ..-.+.+++ +++.+|+|+||+-.
T Consensus 266 p~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11111 112233333 57999999999843
No 417
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.60 E-value=0.18 Score=56.77 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=58.4
Q ss_pred HHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC-----
Q 003265 106 QVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS----- 178 (835)
Q Consensus 106 ~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----- 178 (835)
.+-+.|.. ..-+++.|.|++|+|||||+.++.... ...-..+++++..+. ..++...+ +.++...++
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCC
Confidence 44444544 255799999999999999999998876 223346777776554 34444443 444432110
Q ss_pred --------CCCCCHHHHHHHHHHHhcC-CcEEEEEccc
Q 003265 179 --------WKSRSAEEKALDIFRSLRG-KRIVLLLDDI 207 (835)
Q Consensus 179 --------~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 207 (835)
......++.+..+.+.+.. +.-.+|+|.+
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 1222345566666666643 4557788876
No 418
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.59 E-value=0.057 Score=57.14 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=38.8
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+||.+..+..++-.+.+....-+.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 679999999998777777666778899999999999999998665
No 419
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.54 E-value=0.053 Score=52.40 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEE
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV 154 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 154 (835)
.++|.|+|+.|+|||||++.+.... ...|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 56776555444
No 420
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.2 Score=54.54 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=46.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
...+++++|+.|+||||++..++... ......+.+..+.... .....+-+....+.++.+.. ...+..+....+ .
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~v~~~~dl~~al-~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--SIKDIADLQLML-H 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--cCCCHHHHHHHH-H
Confidence 35699999999999999999888764 1112223344444322 12333444555555554432 122333333222 2
Q ss_pred HhcCCcEEEEEccc
Q 003265 194 SLRGKRIVLLLDDI 207 (835)
Q Consensus 194 ~l~~k~~LlVlDdv 207 (835)
.++++ -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 33333 34666665
No 421
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.52 E-value=0.058 Score=51.01 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=32.7
Q ss_pred ccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 97 VVGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 97 ~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+||.+..+.++++.+.. ....-|.|+|..|+||+.+|+.+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46788888888877764 233556699999999999999999865
No 422
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.0062 Score=59.90 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=73.4
Q ss_pred CCcceEEEeecCCCCccccccCchHh-hhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcch-HHhccCc
Q 003265 489 MPSLKVLKMSYCGQSWSSFQLPVGMS-ELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPR-QLISNYS 566 (835)
Q Consensus 489 l~~Lr~L~Ls~~~~~~~i~~lp~~i~-~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~ 566 (835)
+.+.+.|+..+| .+..+ +|+ ++. .|++|.||-|+|+.| ..+..+++|+.|+|+.| .+..+.. .-+.+|+
T Consensus 18 l~~vkKLNcwg~----~L~DI--sic~kMp-~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGC----GLDDI--SICEKMP-LLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCC----CccHH--HHHHhcc-cceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 556788899999 67666 344 455 999999999999998 45788999999999988 5666543 2267889
Q ss_pred ccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEE
Q 003265 567 RLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLE 611 (835)
Q Consensus 567 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 611 (835)
+|+.|-+..|...+.. ...-....|..|+||++|+
T Consensus 89 sLr~LWL~ENPCc~~a----------g~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEA----------GQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCccccc----------chhHHHHHHHHcccchhcc
Confidence 9999998876554210 0111233456677777766
No 423
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.47 E-value=0.11 Score=56.24 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHHhh-------c---C--------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLV-------E---E--------SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~-------~---~--------~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.++.+...+. . . ....|.++|++|+|||++|+.++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 56899998888865551 1 0 12578999999999999999999876
No 424
>PRK05973 replicative DNA helicase; Provisional
Probab=94.47 E-value=0.23 Score=49.63 Aligned_cols=49 Identities=12% Similarity=0.121 Sum_probs=34.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDI 168 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 168 (835)
...++.|.|.+|+|||+++.++.... . +. -..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a-~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-M-KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-H-hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 45689999999999999999987765 1 22 345777766554 34444443
No 425
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.46 E-value=0.032 Score=51.44 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 003265 118 IIGLYGMGGVGKTTLLTHIN 137 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~ 137 (835)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 426
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.46 E-value=0.049 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.||||||+.+.--.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 44689999999999999999986544
No 427
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.45 E-value=1.6 Score=46.84 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=39.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEe-cCccCHHHHHHHHHHHhCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV-SKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~ 175 (835)
...||-.+|.-|.||||.|-.+++.+ +. ..+. +.-|++ ...+..-+-++.++.+++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~l-kk-~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYL-KK-KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHH-HH-cCCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 45789999999999999999999988 22 2222 223322 22345566778888888654
No 428
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.44 E-value=0.11 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
.-.+++|+|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999876
No 429
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.44 E-value=0.037 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 430
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.32 Score=54.76 Aligned_cols=173 Identities=21% Similarity=0.219 Sum_probs=89.4
Q ss_pred cccchHHHHHHH---HHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQV---WTCLVEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l---~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
+..|.|+.++++ ++.|.+. -.+-|.++|++|.|||.||++++... .+ ..|. .|..
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf~------iSGS----- 217 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFFS------ISGS----- 217 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Ccee------ccch-----
Confidence 456888766554 5555542 13568899999999999999999986 22 2221 1111
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc------------c----cccccccCCCC-CCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER------------V----DLTKVGVPLPG-PQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~----~~~~l~~~l~~-~~~~ 226 (835)
+..+.+- ............+..+.-++++++|.++.. + .+.++..-... ..+.
T Consensus 218 ---~FVemfV-------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 ---DFVEMFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred ---hhhhhhc-------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 0011110 011112223334455667899999998632 1 12223222220 1112
Q ss_pred CcEEEEEccchhhhh--cc---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchH
Q 003265 227 TSKVVFTTRFIDVCG--SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLA 295 (835)
Q Consensus 227 ~s~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 295 (835)
|..||-.|-..+|.. .+ .-++.+.++.-+-..-.+++.-++........-++.. |++.+-|.-.|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcccc
Confidence 334444454454431 12 2245666666665666677776655444333333333 66667665433
No 431
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.43 E-value=0.047 Score=50.39 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|-|.|.+|.||||||+.+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999998
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.42 E-value=0.15 Score=56.30 Aligned_cols=87 Identities=24% Similarity=0.341 Sum_probs=47.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
..|++++|+.|+||||++.+++... .....-..+..|.... .....+-++...+.++.+.. ...+..+....+ ..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~-~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--~~~~~~Dl~~aL-~~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC-VMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--AVKDAADLRLAL-SE 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH-HHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee--ccCCchhHHHHH-Hh
Confidence 4799999999999999999998876 2222222344554432 12333444555555554321 111222222222 23
Q ss_pred hcCCcEEEEEccc
Q 003265 195 LRGKRIVLLLDDI 207 (835)
Q Consensus 195 l~~k~~LlVlDdv 207 (835)
++++ -.+++|-.
T Consensus 332 L~d~-d~VLIDTa 343 (484)
T PRK06995 332 LRNK-HIVLIDTI 343 (484)
T ss_pred ccCC-CeEEeCCC
Confidence 3444 46777776
No 433
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.38 E-value=0.14 Score=56.76 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc
Q 003265 106 QVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 158 (835)
Q Consensus 106 ~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 158 (835)
.+-+.|.. ..-.++.|.|.+|+|||||+.+++... .. .-..++|++....
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~-a~--~g~kvlYvs~EEs 133 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL-AK--NQMKVLYVSGEES 133 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH-Hh--cCCcEEEEECcCC
Confidence 34344443 245799999999999999999998776 22 2235788876543
No 434
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.38 E-value=0.03 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 435
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.38 E-value=0.13 Score=59.38 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=49.7
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
.++|.++.++.+...+.... .+.++|++|+||||+|+.+++... ...|...+++. ....+...+++.++.+++
T Consensus 19 ~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 19 QVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 67899988888877776553 555999999999999999999872 22333333332 222244556777766664
No 436
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.37 E-value=0.13 Score=56.19 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC----CCCCCCHH----
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD----SWKSRSAE---- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~---- 185 (835)
..-..++|.|..|+|||||++.++... .. -..+++..-.+...+.++.+.+...-+.... ...+....
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 455689999999999999999998765 11 1234444444445566666666544221110 00111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEcccC
Q 003265 186 --EKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 186 --~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
...-.+.+++ +++.+|+++||+-
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122233444 5899999999984
No 437
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.36 E-value=0.13 Score=52.09 Aligned_cols=59 Identities=27% Similarity=0.324 Sum_probs=38.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhcccCCC-------CCCeEEEEEecCc-cCHHHHHHHHHHHhCCCC
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKFLESPT-------NFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVG 176 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 176 (835)
++.|+|.||+|||||+-..+=....-++ .-..+++|++... .++..=++.+..+++.+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4556799999999999776544322222 3346788877554 345555667777777654
No 438
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.34 E-value=0.44 Score=49.91 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=41.2
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHH
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIG 169 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 169 (835)
+++.+.. ..-..++|.|..|+|||+|++++.+.. .-+.++++-+.+.. .+.+++.++-
T Consensus 147 vID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 147 VLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhccccccCCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 4444443 345689999999999999999998865 22568888886653 4566666653
No 439
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.33 E-value=0.053 Score=57.37 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+||.++.+..|+..+.+....-|.|.|..|+||||+|+.+++-.
T Consensus 18 ~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 679999999999888888777778899999999999999997765
No 440
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.33 E-value=0.25 Score=48.77 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|.|..|.|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998654
No 441
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.31 E-value=0.058 Score=49.25 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
++|.|+|..|+|||||++.+.+... ...+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999982 24555555555544
No 442
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.30 E-value=0.031 Score=54.87 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|+|.|+.|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.29 E-value=0.091 Score=54.05 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
...+++.|+|.+|+|||+++.++.... ......++||+.... ..++.+...+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 456899999999999999999998887 445788999988775 3445444443 44
No 444
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.28 E-value=0.14 Score=55.70 Aligned_cols=94 Identities=13% Similarity=0.207 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCC--CCCC---------eEEEEEecCccCHHHHHHHHHHHhC-CCC-----
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESP--TNFD---------CVIWVVVSKDLRLEKLQEDIGKKIG-LVG----- 176 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~----- 176 (835)
..-.-++|.|.+|+|||||+..+.+.. ... ...| .++++.+.+.....+.+...+..-+ ...
T Consensus 139 g~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ 217 (466)
T TIGR01040 139 ARGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFL 217 (466)
T ss_pred ccCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEE
Confidence 345678999999999999999998876 210 0012 5677777777666665555555544 111
Q ss_pred CCCCCCCHHH-----HHHHHHHHh---cCCcEEEEEcccC
Q 003265 177 DSWKSRSAEE-----KALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 177 ~~~~~~~~~~-----~~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
...+...... .+-.+.+++ +++++|+++||+-
T Consensus 218 atsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 218 NLANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred ECCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 0001111111 112234444 4699999999984
No 445
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.27 E-value=0.039 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 446
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.067 Score=55.90 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQED 167 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 167 (835)
.+++.+.|.|||||||+|.+.+-.. . .....++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~l-A--~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKL-A--ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHH-H--HcCCcEEEEEeCCCCchHhhhcc
Confidence 4789999999999999999977766 2 22244666766665555555443
No 447
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.20 E-value=0.27 Score=50.42 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
.-+++.|.|.+|+|||++|.+++... ...-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecC
Confidence 45789999999999999999987765 12234678888764
No 448
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.19 E-value=0.066 Score=56.55 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 678999999888765554445568899999999999999997765
No 449
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.17 E-value=0.17 Score=47.91 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=45.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRS-AEEKALDIFRSL 195 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l 195 (835)
.++.|.|.+|+||||+|..+.... . . ..+++......+ .+..+.|..........+.... ...+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998775 1 1 234454444333 3444555433322222222111 112333333323
Q ss_pred cCCcEEEEEccc
Q 003265 196 RGKRIVLLLDDI 207 (835)
Q Consensus 196 ~~k~~LlVlDdv 207 (835)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 32 337999997
No 450
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.17 E-value=0.02 Score=33.29 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.9
Q ss_pred cceEEEeecCCCCccccccCchHhh
Q 003265 491 SLKVLKMSYCGQSWSSFQLPVGMSE 515 (835)
Q Consensus 491 ~Lr~L~Ls~~~~~~~i~~lp~~i~~ 515 (835)
+|++|+|++| .++.+|+++++
T Consensus 1 ~L~~Ldls~n----~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN----NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS----EESEEGTTTTT
T ss_pred CccEEECCCC----cCEeCChhhcC
Confidence 5889999999 88888887654
No 451
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.17 E-value=0.099 Score=57.00 Aligned_cols=93 Identities=25% Similarity=0.369 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHH---
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAE--- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 185 (835)
..-..++|.|.+|+|||+|+.++.... . +.+-+.++++-+.+.. .+.++.+++...-..... ...+.+..
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 345689999999999999999988775 2 2334678888876654 456677766553221110 00111111
Q ss_pred ---HHHHHHHHHh---cCCcEEEEEcccC
Q 003265 186 ---EKALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ---~~~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
..+-.+.+++ +++.+|+++||+-
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 1122334444 4689999999984
No 452
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.16 E-value=0.14 Score=48.88 Aligned_cols=118 Identities=22% Similarity=0.177 Sum_probs=62.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC---ccCHHHHHHHHH--HH--hCCCCCCCCCCCHH--
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK---DLRLEKLQEDIG--KK--IGLVGDSWKSRSAE-- 185 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~--~~--l~~~~~~~~~~~~~-- 185 (835)
....|-|+|..|-||||.|.-++-+.. ...+ .+..+..-+ .......+..+- .. .+.. -.+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~-~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGK-KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHH
Confidence 457899999999999999998877751 2222 333343322 223334443321 00 0110 001111111
Q ss_pred -----HHHHHHHHHhcCCcE-EEEEcccCC-----cccccccccCCCCCCCCCcEEEEEccch
Q 003265 186 -----EKALDIFRSLRGKRI-VLLLDDIWE-----RVDLTKVGVPLPGPQNTTSKVVFTTRFI 237 (835)
Q Consensus 186 -----~~~~~l~~~l~~k~~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~~s~IivTtR~~ 237 (835)
...+..++.+...+| +||||++-. ..+.+++...+. ....+.-||+|-|..
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 122233444544444 999999843 233444544454 455677999999974
No 453
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.16 E-value=0.036 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 454
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.15 E-value=0.046 Score=52.39 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 455
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.15 E-value=0.07 Score=49.47 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 103 QLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 103 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+++|.+.+.. +++.++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35666666654 799999999999999999998864
No 456
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.14 E-value=0.069 Score=53.12 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 457
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.12 E-value=0.14 Score=55.78 Aligned_cols=90 Identities=23% Similarity=0.375 Sum_probs=54.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHHHH-
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAEEK- 187 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~- 187 (835)
..-..++|.|..|+|||||++.++... .-+.++++-+.+.. .+.++.+..+..-+.... ...+......
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERA 234 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHH
Confidence 355689999999999999999998875 22567777776653 455555544432111110 0011122111
Q ss_pred -----HHHHHHHh--cCCcEEEEEcccC
Q 003265 188 -----ALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 188 -----~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
+-.+.+++ +++++|+++||+-
T Consensus 235 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 235 KAGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 12233333 6899999999984
No 458
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.10 E-value=0.0046 Score=59.16 Aligned_cols=84 Identities=15% Similarity=0.056 Sum_probs=61.9
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVN 542 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~ 542 (835)
..+...+.|+++.|....+... |+-+..|..|+++.| .+..+|...+.+. .++.+++..|..+.+|.+.+.++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn----q~~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN----QIKFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh----hHhhChhhHHHHH-HHHHHHhhccchhhCCccccccCC
Confidence 5667777777775554444444 666777777888877 7777888888777 788888777777888888888888
Q ss_pred CcEEeccccc
Q 003265 543 LKCLNLRWAY 552 (835)
Q Consensus 543 L~~L~L~~~~ 552 (835)
++++++.++.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 8888877774
No 459
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.09 E-value=0.16 Score=59.19 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++-|.|.+|+|||||+.+++... . ..-..++|+.....++. ..+++++...+. ....+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a-~--~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA-Q--AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46788999999999999998876654 1 22356799988777663 366666654321 1223445555556
Q ss_pred HHHhc-CCcEEEEEcccC
Q 003265 192 FRSLR-GKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l~-~k~~LlVlDdv~ 208 (835)
...++ ++.-+||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 466799999984
No 460
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.08 E-value=0.044 Score=48.55 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|.|+|..|+|||||++.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998776
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.07 E-value=0.044 Score=49.95 Aligned_cols=23 Identities=48% Similarity=0.748 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 462
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.06 E-value=0.039 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 463
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.05 E-value=0.083 Score=55.06 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=40.9
Q ss_pred cccchHHHHHHHHHHhhc------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.++++++.+.. ..-+++.++|+.|.||||||..+.+-.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999864 466899999999999999999998887
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.03 E-value=0.056 Score=52.37 Aligned_cols=105 Identities=16% Similarity=0.080 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCC
Q 003265 104 LEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRS 183 (835)
Q Consensus 104 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 183 (835)
..++++.... ....+.|+|+.|.||||+++.+.... . ..- ..+-+ ........-..... ++...........
T Consensus 14 ~~~~l~~~v~-~g~~i~I~G~tGSGKTTll~aL~~~i-~--~~~-~~i~i--ed~~E~~~~~~~~~-~~~~~~~~~~~~~ 85 (186)
T cd01130 14 QAAYLWLAVE-ARKNILISGGTGSGKTTLLNALLAFI-P--PDE-RIITI--EDTAELQLPHPNWV-RLVTRPGNVEGSG 85 (186)
T ss_pred HHHHHHHHHh-CCCEEEEECCCCCCHHHHHHHHHhhc-C--CCC-CEEEE--CCccccCCCCCCEE-EEEEecCCCCCCC
Confidence 3344444333 34689999999999999999998765 2 111 22222 11110000000000 0000000000111
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccCCccccccc
Q 003265 184 AEEKALDIFRSLRGKRIVLLLDDIWERVDLTKV 216 (835)
Q Consensus 184 ~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l 216 (835)
.....+.+...++..+=.++++.+.+.+.+..+
T Consensus 86 ~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 86 EVTMADLLRSALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred ccCHHHHHHHHhccCCCEEEEEccCcHHHHHHH
Confidence 223444556677777888999999776555433
No 465
>PRK13947 shikimate kinase; Provisional
Probab=94.03 E-value=0.046 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 466
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.01 E-value=0.15 Score=55.63 Aligned_cols=93 Identities=20% Similarity=0.364 Sum_probs=57.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCCCCHHH--
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKSRSAEE-- 186 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~-- 186 (835)
..-..++|.|.+|+|||||+..+.... . ..+-+.++++-+.+.. .+.++++++...-..... .....+...
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 345689999999999999999988765 1 2223467777776553 566777777543221110 001122111
Q ss_pred ----HHHHHHHHh---cCCcEEEEEcccC
Q 003265 187 ----KALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 187 ----~~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
.+-.+.+++ +++.+|+++||+-
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 122344455 5689999999994
No 467
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.00 E-value=0.074 Score=56.97 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=60.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
.....|.|.|+.|.||||+++.+.... ......+++. +.++... ..... ..+-...+ ...+.......++.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e--vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE--VGLDTLSFANALRA 190 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEccc--cCCCCcCHHHHHHH
Confidence 345789999999999999999988876 3333444443 2222111 10000 00000000 11112234556777
Q ss_pred HhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccc
Q 003265 194 SLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRF 236 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~ 236 (835)
.++..+=.|++|++.+...+...... ...|..|+.|.-.
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha 229 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHT 229 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcC
Confidence 88899999999999766555432221 2234445555554
No 468
>PRK13949 shikimate kinase; Provisional
Probab=93.99 E-value=0.05 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+-|.|+|++|+||||+++.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.98 E-value=0.18 Score=54.91 Aligned_cols=90 Identities=23% Similarity=0.310 Sum_probs=48.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCC--------CCC--CCC
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVG--------DSW--KSR 182 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~~~--~~~ 182 (835)
..-..++|+|..|+|||||++.+.... . .+..+...+.. ..++.++....+..-+... +.. ...
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-Q----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-C----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 455789999999999999999987754 1 12222232322 2234444434333322110 000 011
Q ss_pred CHHHHHHHHHHHh--cCCcEEEEEcccC
Q 003265 183 SAEEKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 183 ~~~~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.....+..+.+.+ +++.+|+++||+-
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dslt 255 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLT 255 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchh
Confidence 1122222333333 5799999999984
No 470
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.15 Score=51.36 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....++|||++|.|||-+|+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 45679999999999999999999987
No 471
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.98 E-value=0.077 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998876
No 472
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.98 E-value=0.14 Score=55.46 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 103 QLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 103 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+.+++.+.......+.|.|.||.|||+|.+++.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666666667889999999999999999999987
No 473
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.96 E-value=0.089 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.|.|.|.+|+||||+|+.+...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999987
No 474
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.94 E-value=0.045 Score=51.70 Aligned_cols=22 Identities=45% Similarity=0.609 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhhc
Q 003265 119 IGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 119 i~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|.|.|.+|+|||||++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999999887
No 475
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.94 E-value=0.12 Score=53.07 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=40.3
Q ss_pred CcccchHHHHHH---HHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC
Q 003265 95 RKVVGLQSQLEQ---VWTCLVEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF 147 (835)
Q Consensus 95 ~~~vGr~~~~~~---l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f 147 (835)
+.+||..+..+. +++++.++ .-+.|.|+|++|.|||+||-.++... -..-.|
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 378998776654 56677664 45789999999999999999999998 333344
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.94 E-value=0.38 Score=49.86 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
...++.|.|.+|+||||++.+++.... ..+-..++|++.... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 345888999999999999999887761 222346888877653 34555555443
No 477
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.93 E-value=0.062 Score=52.96 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEE-------ecCccCHHHH--HHHHHHHhCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVV-------VSKDLRLEKL--QEDIGKKIGLV 175 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-------~s~~~~~~~~--~~~i~~~l~~~ 175 (835)
....|.++||+|.||||..+.++.+. ..+.....++=.. ..-+.|+++. .++++++.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 45678899999999999999999887 3333333333221 1222344443 45777776554
No 478
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.92 E-value=0.15 Score=55.46 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=53.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC----CCCCCCH-----
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD----SWKSRSA----- 184 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~~----- 184 (835)
..-..++|+|..|+|||||++.++... +. ...++...-.+...+.+++++.+..-+.... .....+.
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA---KA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC---CC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 355688999999999999999998865 11 1223333333445666776665554322110 0011111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEcccCC
Q 003265 185 -EEKALDIFRSL--RGKRIVLLLDDIWE 209 (835)
Q Consensus 185 -~~~~~~l~~~l--~~k~~LlVlDdv~~ 209 (835)
...+..+.+++ ++++.|+++||+-.
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 11122233333 57999999999843
No 479
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.90 E-value=0.25 Score=52.07 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 480
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.26 Score=47.85 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCcEEEEEcccCCccccccccc---CCCCCCCCCcEEEEEccchhhhhccCCCceEEe
Q 003265 186 EKALDIFRSLRGKRIVLLLDDIWERVDLTKVGV---PLPGPQNTTSKVVFTTRFIDVCGSMEADRKFLV 251 (835)
Q Consensus 186 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~---~l~~~~~~~s~IivTtR~~~v~~~~~~~~~~~l 251 (835)
....++.+.+--++-+.|||..++-.+.+.+.. -+..-...|+-+++.|..+.++.....+..+.+
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 344456666666788999999987555444321 111112346677777888888887776665544
No 481
>PRK14530 adenylate kinase; Provisional
Probab=93.87 E-value=0.05 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 482
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.87 E-value=0.074 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|..|.|||||++.++--.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 345689999999999999999987643
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.83 E-value=0.058 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.81 E-value=0.23 Score=57.76 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=51.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC--HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR--LEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
.++++++|+.|+||||++.+++..+ ........+..++.. .+. ..+.++...+.++.+.. ...+..++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~-~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~- 259 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC-VAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA- 259 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH-HHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-
Confidence 4699999999999999999988766 211222345555433 232 44556666666665432 2234445444443
Q ss_pred HhcCCcEEEEEcccC
Q 003265 194 SLRGKRIVLLLDDIW 208 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~ 208 (835)
.++++ =+|++|-.-
T Consensus 260 ~~~~~-D~VLIDTAG 273 (767)
T PRK14723 260 ALGDK-HLVLIDTVG 273 (767)
T ss_pred HhcCC-CEEEEeCCC
Confidence 34444 377777764
No 485
>PRK15453 phosphoribulokinase; Provisional
Probab=93.81 E-value=0.43 Score=48.51 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|.|.+|.||||+|+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998766
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.77 E-value=0.05 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998865
No 487
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.76 E-value=0.22 Score=54.64 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=50.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH------hCCCCCCCCCCCH---
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK------IGLVGDSWKSRSA--- 184 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~------l~~~~~~~~~~~~--- 184 (835)
..-..++|+|..|+|||||++.+.... .. -..++++.--+..++.++....+.. +..-.. .+....
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~-~~~~~~~r~ 230 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-SA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT-SDQPALMRI 230 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-CC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC-CCCCHHHHH
Confidence 456799999999999999999888765 11 2234444333444455544432221 110000 011111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEcccC
Q 003265 185 --EEKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 185 --~~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
...+-.+.+++ +++.+|+++||+-
T Consensus 231 ~~~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 231 KGAYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 11122233444 6899999999984
No 488
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.75 E-value=0.16 Score=55.34 Aligned_cols=90 Identities=23% Similarity=0.301 Sum_probs=51.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVG-----DSWKSRSAEE- 186 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 186 (835)
..-..++|+|..|+|||||++.+.... ..+..+++.+.. ...+.+++.+....-.... ...+......
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 455689999999999999999888754 234455555544 3445566665433110000 0001111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEcccC
Q 003265 187 ----KALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 187 ----~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.+-.+.+++ +++++|+++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 122233444 5899999999994
No 489
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.74 E-value=0.071 Score=52.68 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=27.4
Q ss_pred HHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 109 TCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 109 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.+...++++|+++|..|+|||||..++....
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33445689999999999999999999998875
No 490
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.73 E-value=0.074 Score=55.74 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=29.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
+++.+.|.|||||||+|...+-.. ..++ ..++-++.....++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~-A~~G--~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALAL-ARRG--KRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HHTT--S-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHH-hhCC--CCeeEeecCCCccHHH
Confidence 689999999999999998887776 2222 2345454444333333
No 491
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.72 E-value=0.23 Score=44.63 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=41.9
Q ss_pred ceEEEEeeeCCccccCCC--CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhh-hhhccc
Q 003265 445 NVRRLSLMQNQIETLSEV--PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSE-LGSSLQ 521 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~-l~~~L~ 521 (835)
+++.+.+.. .+..+... ..+++|+.+.+.. ....++...|.+++.|+.+.+.++ +..++..... +. +|+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-----~~~i~~~~F~~~~-~l~ 84 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN-NLTSIGDNAFSNCKSLESITFPNN-----LKSIGDNAFSNCT-NLK 84 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS-TTSCE-TTTTTT-TT-EEEEETST-----T-EE-TTTTTT-T-TEC
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc-cccccceeeeeccccccccccccc-----ccccccccccccc-ccc
Confidence 444444442 34444332 5565666666653 222555555666666666666432 3333333333 44 666
Q ss_pred EEeeccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCccc
Q 003265 522 LFDISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRL 568 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L 568 (835)
.+++..+ +..++. .+.+. +|+.+.+.. .+..++.+.+.+.++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 6666543 444433 33443 666666554 2455555555555554
No 492
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.71 E-value=0.19 Score=55.31 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC--eEEEEEecCc-cCHHHHHHHHHHHhCCCCC-----CCCCCCHH-
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD--CVIWVVVSKD-LRLEKLQEDIGKKIGLVGD-----SWKSRSAE- 185 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-----~~~~~~~~- 185 (835)
.-.-++|.|..|+|||||+..+.+.. ...+.+. .++++-+.+. ..+.++++.+...-.+... ..+.....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 44678999999999999999998876 2221121 5566666554 3566777766643222110 00111111
Q ss_pred ----HHHHHHHHHh---cCCcEEEEEcccC
Q 003265 186 ----EKALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ----~~~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
-.+-.+.+++ +++++|+++||+-
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 1122244444 4789999999984
No 493
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.70 E-value=0.24 Score=57.90 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-..|+|+|..|+|||||++.+..-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455789999999999999999987654
No 494
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.69 E-value=0.44 Score=60.07 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+-|.++|++|.|||.||++++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999986
No 495
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.69 E-value=0.18 Score=55.14 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=51.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCC-----CCCCCCCHHH-
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVG-----DSWKSRSAEE- 186 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~- 186 (835)
..-..++|+|..|+|||||++.+.... ..+.++...+... .++.++...+...-+... ...+......
T Consensus 166 ~~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~ 240 (451)
T PRK05688 166 GRGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRL 240 (451)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHH
Confidence 345689999999999999999987654 2234444444333 345555555554422211 0011111111
Q ss_pred ----HHHHHHHHh--cCCcEEEEEcccC
Q 003265 187 ----KALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 187 ----~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.+-.+.+++ +++++|+++||+-
T Consensus 241 ~a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 241 RAAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 112233444 6899999999984
No 496
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.68 E-value=0.029 Score=54.26 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 003265 118 IIGLYGMGGVGKTTLLTHINN 138 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~ 138 (835)
++.|.|+.|.||||+++.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 497
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.66 E-value=0.16 Score=54.17 Aligned_cols=63 Identities=27% Similarity=0.294 Sum_probs=46.0
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 166 (835)
.++|+++.+..+...+..+ +-+.+.|.+|+|||+||+.++... .. ...+|.+.......++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l---~~---~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL---GL---PFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh---CC---CeEEEecCCCCCHHHhcC
Confidence 5788888888776666544 367789999999999999999987 22 235566666665555543
No 498
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.62 E-value=0.18 Score=54.76 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=51.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCC----CCCCCCHH---
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGD----SWKSRSAE--- 185 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 185 (835)
..-..++|+|..|+|||||++.+.... . .+..+.+.+... ..+.++.+.....-..... ........
T Consensus 135 ~~Gq~~~I~G~sG~GKTtLl~~I~~~~---~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~ 209 (411)
T TIGR03496 135 GRGQRMGIFAGSGVGKSTLLGMMARYT---E--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRL 209 (411)
T ss_pred ecCcEEEEECCCCCCHHHHHHHHhcCC---C--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHH
Confidence 345689999999999999999888765 1 234444555443 3455555555443211110 00111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEcccC
Q 003265 186 ---EKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 186 ---~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
..+-.+.+++ +++++|+++||+-
T Consensus 210 ~a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 210 RAAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 1112233344 6899999999984
No 499
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.59 E-value=0.069 Score=51.91 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 500
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.59 E-value=0.22 Score=57.36 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+-..++|+|+.|.|||||++.+..-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456799999999999999999998665
Done!