Query 003265
Match_columns 835
No_of_seqs 494 out of 4349
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:13:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003265.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003265hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.1E-46 7E-51 427.9 18.3 304 98-419 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.4E-38 8.3E-43 362.7 20.2 285 96-412 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-35 9.7E-40 373.2 27.4 297 96-418 125-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 5.3E-33 1.8E-37 322.5 26.3 291 96-415 125-448 (591)
5 4fmz_A Internalin; leucine ric 99.9 3.5E-24 1.2E-28 231.3 19.0 304 440-808 40-343 (347)
6 4fmz_A Internalin; leucine ric 99.9 3.5E-23 1.2E-27 223.4 23.0 298 425-786 47-344 (347)
7 4ecn_A Leucine-rich repeat pro 99.9 5.4E-23 1.8E-27 243.4 21.6 325 440-809 444-838 (876)
8 3v47_A TOLL-like receptor 5B a 99.9 4.8E-23 1.6E-27 231.2 20.1 351 424-808 12-405 (455)
9 4eco_A Uncharacterized protein 99.9 3.7E-23 1.2E-27 241.0 18.5 323 440-808 202-597 (636)
10 2id5_A Lingo-1, leucine rich r 99.9 1.5E-22 5E-27 228.6 22.6 171 426-618 15-189 (477)
11 1o6v_A Internalin A; bacterial 99.9 3.4E-22 1.2E-26 224.5 25.2 141 426-579 50-190 (466)
12 2z63_A TOLL-like receptor 4, v 99.9 1.1E-22 3.7E-27 235.4 20.5 360 425-808 10-528 (570)
13 3o6n_A APL1; leucine-rich repe 99.9 9.8E-23 3.4E-27 223.5 18.7 302 441-808 42-349 (390)
14 3vq2_A TLR4, TOLL-like recepto 99.9 1E-22 3.5E-27 237.3 19.6 148 425-580 14-167 (606)
15 2id5_A Lingo-1, leucine rich r 99.9 2.2E-22 7.6E-27 227.1 21.6 310 447-808 14-330 (477)
16 3o6n_A APL1; leucine-rich repe 99.9 1.7E-22 5.8E-27 221.7 19.1 108 465-578 44-153 (390)
17 2z81_A CD282 antigen, TOLL-lik 99.9 1.8E-22 6.2E-27 232.3 20.2 148 427-580 10-162 (549)
18 1o6v_A Internalin A; bacterial 99.9 5.1E-22 1.7E-26 223.1 22.1 323 443-808 45-385 (466)
19 2z7x_B TOLL-like receptor 1, v 99.9 7.6E-22 2.6E-26 225.4 22.2 357 425-808 3-478 (520)
20 3rgz_A Protein brassinosteroid 99.9 2.1E-22 7.1E-27 240.3 16.8 130 441-578 197-330 (768)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-21 7.8E-26 223.4 23.9 142 425-578 34-181 (562)
22 3t6q_A CD180 antigen; protein- 99.9 1.7E-21 5.8E-26 227.0 22.9 147 425-580 15-167 (606)
23 3oja_B Anopheles plasmodium-re 99.9 5.9E-22 2E-26 229.5 18.3 301 442-808 49-355 (597)
24 3oja_B Anopheles plasmodium-re 99.9 6.3E-22 2.1E-26 229.3 18.5 284 463-808 48-334 (597)
25 3t6q_A CD180 antigen; protein- 99.9 1.3E-21 4.5E-26 227.9 21.2 265 513-808 274-557 (606)
26 3rgz_A Protein brassinosteroid 99.9 6.4E-22 2.2E-26 236.1 18.5 83 444-530 294-380 (768)
27 3vq2_A TLR4, TOLL-like recepto 99.9 4E-22 1.4E-26 232.3 16.1 358 427-808 37-555 (606)
28 3j0a_A TOLL-like receptor 5; m 99.9 3.8E-21 1.3E-25 231.8 25.0 149 424-580 6-162 (844)
29 2ft3_A Biglycan; proteoglycan, 99.9 1E-21 3.4E-26 210.3 17.1 294 445-786 34-331 (332)
30 4eco_A Uncharacterized protein 99.9 4.3E-22 1.5E-26 232.0 14.6 235 463-731 203-473 (636)
31 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-21 7.1E-26 221.8 19.7 123 447-579 3-128 (520)
32 4ecn_A Leucine-rich repeat pro 99.9 1.3E-21 4.3E-26 231.7 18.1 319 437-793 481-844 (876)
33 1xku_A Decorin; proteoglycan, 99.9 4.4E-21 1.5E-25 205.2 20.6 293 445-785 32-329 (330)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-21 1.5E-25 221.0 21.3 126 445-580 32-160 (562)
35 4fcg_A Uncharacterized protein 99.9 2.2E-21 7.5E-26 206.6 16.2 107 465-578 80-195 (328)
36 4fcg_A Uncharacterized protein 99.9 4E-21 1.4E-25 204.6 15.7 85 488-579 79-163 (328)
37 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-21 1.2E-25 214.6 15.2 298 428-792 48-355 (457)
38 1ziw_A TOLL-like receptor 3; i 99.8 2.5E-20 8.7E-25 220.2 21.0 149 425-580 7-159 (680)
39 3v47_A TOLL-like receptor 5B a 99.8 1.2E-20 4.2E-25 211.6 17.3 322 448-808 14-381 (455)
40 3bz5_A Internalin-J, INLJ; leu 99.8 1.7E-20 5.8E-25 208.9 17.8 303 440-807 38-348 (457)
41 3j0a_A TOLL-like receptor 5; m 99.8 4.1E-20 1.4E-24 222.8 22.4 315 447-808 7-391 (844)
42 1ziw_A TOLL-like receptor 3; i 99.8 7.3E-20 2.5E-24 216.2 23.1 245 447-726 7-284 (680)
43 2z63_A TOLL-like receptor 4, v 99.8 2.8E-20 9.7E-25 215.1 18.5 343 427-792 33-535 (570)
44 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-20 6.3E-25 198.3 13.5 246 467-764 51-305 (313)
45 1ogq_A PGIP-2, polygalacturona 99.8 4.4E-20 1.5E-24 195.4 15.2 247 444-729 50-306 (313)
46 2z81_A CD282 antigen, TOLL-lik 99.8 5.3E-20 1.8E-24 211.7 16.9 186 449-644 10-209 (549)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.5E-19 5E-24 193.5 18.8 284 467-809 34-331 (332)
48 1xku_A Decorin; proteoglycan, 99.8 4.5E-19 1.5E-23 189.5 20.5 262 467-786 32-304 (330)
49 4g8a_A TOLL-like receptor 4; l 99.8 3.6E-19 1.2E-23 208.7 20.3 147 426-580 35-187 (635)
50 2z80_A TOLL-like receptor 2, v 99.8 4.6E-19 1.6E-23 191.4 17.4 129 445-578 53-186 (353)
51 2z66_A Variable lymphocyte rec 99.8 4.3E-19 1.5E-23 187.6 15.5 242 448-761 11-259 (306)
52 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-18 6.7E-23 197.9 20.1 253 425-761 43-295 (622)
53 2z80_A TOLL-like receptor 2, v 99.8 5.9E-19 2E-23 190.5 14.6 268 449-786 36-312 (353)
54 1jl5_A Outer protein YOPM; leu 99.8 3.8E-18 1.3E-22 189.8 20.2 212 425-668 74-288 (454)
55 3zyj_A Leucine-rich repeat-con 99.8 1.3E-18 4.5E-23 193.7 15.6 221 445-726 65-291 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 2.4E-18 8.3E-23 192.3 15.9 223 466-725 75-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 188.3 18.6 242 446-761 45-290 (440)
58 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-17 6.1E-22 190.0 21.5 255 445-786 41-295 (622)
59 3zyi_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 189.0 16.6 241 468-786 56-301 (452)
60 4g8a_A TOLL-like receptor 4; l 99.8 9.5E-18 3.3E-22 196.6 19.0 359 425-807 55-576 (635)
61 2z66_A Variable lymphocyte rec 99.8 2.5E-18 8.4E-23 181.7 12.5 243 469-786 10-259 (306)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-19 6.4E-24 191.1 3.8 103 463-579 31-133 (317)
63 1jl5_A Outer protein YOPM; leu 99.7 1.2E-17 4.1E-22 185.7 17.5 272 444-797 131-420 (454)
64 3o53_A Protein LRIM1, AGAP0063 99.7 8.8E-18 3E-22 178.1 12.3 267 467-793 11-280 (317)
65 1ozn_A Reticulon 4 receptor; N 99.7 8.9E-18 3E-22 175.4 12.0 220 447-727 14-238 (285)
66 3oja_A Leucine-rich immune mol 99.7 6.7E-17 2.3E-21 181.5 14.4 237 463-782 31-270 (487)
67 1wwl_A Monocyte differentiatio 99.7 2.4E-17 8.2E-22 174.4 7.4 241 465-782 42-304 (312)
68 1wwl_A Monocyte differentiatio 99.7 3E-17 1E-21 173.6 7.9 154 446-620 45-216 (312)
69 3oja_A Leucine-rich immune mol 99.7 2.9E-17 9.8E-22 184.6 7.5 234 443-759 33-271 (487)
70 3ogk_B Coronatine-insensitive 99.7 5.3E-17 1.8E-21 188.5 9.7 199 444-665 164-386 (592)
71 1ozn_A Reticulon 4 receptor; N 99.7 4.6E-16 1.6E-20 162.4 14.7 216 427-702 16-236 (285)
72 1h6u_A Internalin H; cell adhe 99.7 4.2E-16 1.4E-20 164.3 14.4 192 463-726 38-229 (308)
73 2qen_A Walker-type ATPase; unk 99.7 2E-15 6.9E-20 162.7 19.7 289 96-412 13-348 (350)
74 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-17 6.3E-22 186.0 3.5 339 445-808 4-408 (461)
75 1z7x_W Ribonuclease inhibitor; 99.7 2.3E-17 7.8E-22 185.3 4.0 313 443-789 55-411 (461)
76 2xwt_C Thyrotropin receptor; s 99.6 6.3E-16 2.1E-20 156.7 12.9 102 467-576 32-140 (239)
77 2ast_B S-phase kinase-associat 99.6 1.7E-16 5.8E-21 170.0 8.7 247 468-792 49-309 (336)
78 1h6u_A Internalin H; cell adhe 99.6 7.2E-16 2.5E-20 162.4 13.2 196 441-708 38-233 (308)
79 2ast_B S-phase kinase-associat 99.6 3.1E-16 1.1E-20 168.0 9.9 241 490-807 47-302 (336)
80 2fna_A Conserved hypothetical 99.6 8.5E-15 2.9E-19 158.2 21.2 284 96-411 14-355 (357)
81 2z62_A TOLL-like receptor 4, v 99.6 1.1E-15 3.9E-20 158.5 13.7 200 466-725 28-235 (276)
82 2xwt_C Thyrotropin receptor; s 99.6 1.1E-15 3.9E-20 154.8 13.2 84 491-579 32-118 (239)
83 1p9a_G Platelet glycoprotein I 99.6 1.2E-15 3.9E-20 159.2 13.0 200 441-702 7-206 (290)
84 2o6q_A Variable lymphocyte rec 99.6 1.8E-15 6.2E-20 156.3 14.3 103 468-579 18-122 (270)
85 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.7E-20 163.6 13.2 237 469-782 12-254 (350)
86 2z62_A TOLL-like receptor 4, v 99.6 2.7E-15 9.4E-20 155.6 14.5 217 427-702 12-235 (276)
87 2o6q_A Variable lymphocyte rec 99.6 2.7E-15 9.3E-20 155.0 13.5 198 445-702 17-216 (270)
88 3rfs_A Internalin B, repeat mo 99.6 6.7E-16 2.3E-20 159.7 8.7 129 443-579 40-170 (272)
89 2p1m_B Transport inhibitor res 99.6 3.2E-16 1.1E-20 182.0 6.3 130 443-578 155-301 (594)
90 3ogk_B Coronatine-insensitive 99.6 1.2E-15 4.1E-20 177.0 9.7 310 442-791 190-528 (592)
91 1p9a_G Platelet glycoprotein I 99.6 5.7E-15 1.9E-19 153.9 13.1 199 463-726 7-207 (290)
92 2ca6_A RAN GTPase-activating p 99.6 1.6E-15 5.6E-20 165.7 9.0 138 463-618 29-200 (386)
93 2ca6_A RAN GTPase-activating p 99.6 7.8E-16 2.7E-20 168.2 5.4 235 486-761 28-314 (386)
94 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.9E-19 155.6 14.4 237 448-723 13-255 (350)
95 3rfs_A Internalin B, repeat mo 99.6 9.6E-15 3.3E-19 151.0 11.9 171 425-616 44-216 (272)
96 1w5s_A Origin recognition comp 99.6 2E-14 6.9E-19 158.5 14.6 290 96-397 23-371 (412)
97 1h6t_A Internalin B; cell adhe 99.5 2.3E-14 7.8E-19 149.5 12.3 170 487-726 43-212 (291)
98 3goz_A Leucine-rich repeat-con 99.5 3.5E-14 1.2E-18 153.4 12.7 245 464-761 20-295 (362)
99 4glp_A Monocyte differentiatio 99.5 1.5E-14 5.1E-19 152.7 9.5 84 489-578 90-181 (310)
100 1m9s_A Internalin B; cell inva 99.5 2.4E-14 8.1E-19 163.9 11.3 37 689-726 173-209 (605)
101 3m19_A Variable lymphocyte rec 99.5 9E-14 3.1E-18 141.8 14.3 170 426-617 18-191 (251)
102 1h6t_A Internalin B; cell adhe 99.5 4E-14 1.4E-18 147.7 11.2 126 442-579 44-169 (291)
103 4ezg_A Putative uncharacterize 99.5 1.2E-13 4.1E-18 135.1 12.6 152 441-618 41-194 (197)
104 2p1m_B Transport inhibitor res 99.5 3.1E-15 1.1E-19 173.7 1.2 304 442-787 182-518 (594)
105 3m19_A Variable lymphocyte rec 99.5 1E-13 3.6E-18 141.3 12.1 151 445-617 15-167 (251)
106 3goz_A Leucine-rich repeat-con 99.5 2E-14 6.9E-19 155.3 4.9 258 472-786 4-295 (362)
107 1m9s_A Internalin B; cell inva 99.5 7.7E-14 2.6E-18 159.7 9.4 171 439-642 38-208 (605)
108 3e6j_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 134.7 12.6 123 449-579 24-148 (229)
109 2v9t_B SLIT homolog 2 protein 99.4 3.6E-13 1.2E-17 134.0 11.1 147 448-616 15-163 (220)
110 4glp_A Monocyte differentiatio 99.4 5.6E-13 1.9E-17 140.6 13.3 221 490-782 64-302 (310)
111 1xeu_A Internalin C; cellular 99.4 4.1E-13 1.4E-17 137.6 10.7 153 436-618 33-185 (263)
112 2v9t_B SLIT homolog 2 protein 99.4 9.5E-13 3.2E-17 131.0 12.2 148 425-579 14-165 (220)
113 2o6s_A Variable lymphocyte rec 99.4 6.7E-13 2.3E-17 131.1 10.6 124 449-579 12-137 (208)
114 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 131.5 12.2 146 427-579 24-172 (229)
115 4ezg_A Putative uncharacterize 99.4 1.6E-12 5.3E-17 127.1 12.1 146 425-579 47-194 (197)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4E-17 130.3 11.3 148 448-617 15-165 (220)
117 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5E-17 129.6 10.9 147 426-579 15-166 (220)
118 1xeu_A Internalin C; cellular 99.4 8.9E-14 3.1E-18 142.6 1.8 122 445-579 20-141 (263)
119 3cvr_A Invasion plasmid antige 99.4 9.4E-13 3.2E-17 148.9 10.3 88 631-732 160-248 (571)
120 2o6s_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 126.0 12.6 146 427-579 12-161 (208)
121 2xot_A Amphoterin-induced prot 99.3 2.6E-12 8.8E-17 138.6 11.7 148 426-580 22-177 (361)
122 3cvr_A Invasion plasmid antige 99.3 3E-12 1E-16 144.8 12.2 114 445-579 60-173 (571)
123 2ell_A Acidic leucine-rich nuc 99.3 2.4E-12 8.3E-17 122.2 9.7 129 444-580 24-161 (168)
124 2qby_B CDC6 homolog 3, cell di 99.3 1.6E-10 5.4E-15 125.9 24.4 287 96-397 21-339 (384)
125 1a9n_A U2A', U2A'; complex (nu 99.3 2.1E-12 7E-17 123.7 7.8 129 442-578 17-152 (176)
126 1dce_A Protein (RAB geranylger 99.3 4.8E-14 1.6E-18 160.4 -4.7 119 632-780 442-566 (567)
127 2xot_A Amphoterin-induced prot 99.3 2.9E-12 9.9E-17 138.1 9.1 155 447-620 21-178 (361)
128 2je0_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 118.6 8.2 123 444-574 17-148 (149)
129 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.5E-17 152.7 7.2 152 444-618 173-329 (727)
130 2v1u_A Cell division control p 99.3 5.1E-11 1.7E-15 129.9 18.0 289 96-397 20-351 (387)
131 1fnn_A CDC6P, cell division co 99.3 1.2E-10 4E-15 127.2 20.9 286 96-397 18-351 (389)
132 2ell_A Acidic leucine-rich nuc 99.3 5E-12 1.7E-16 120.0 7.5 133 464-616 22-158 (168)
133 2qby_A CDC6 homolog 1, cell di 99.3 2.9E-11 1E-15 131.8 13.8 291 96-396 21-347 (386)
134 1a9n_A U2A', U2A'; complex (nu 99.2 6E-12 2E-16 120.5 5.5 141 459-619 12-154 (176)
135 2o6r_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 115.4 10.5 126 447-579 10-137 (177)
136 2je0_A Acidic leucine-rich nuc 99.2 8E-12 2.7E-16 116.0 5.3 128 464-612 15-147 (149)
137 1njg_A DNA polymerase III subu 99.2 1.8E-10 6.2E-15 116.7 15.7 196 96-303 24-231 (250)
138 1w8a_A SLIT protein; signaling 99.2 2.7E-11 9.3E-16 117.6 8.9 126 447-579 11-139 (192)
139 2wfh_A SLIT homolog 2 protein 99.2 4.3E-11 1.5E-15 116.2 10.2 123 448-578 14-138 (193)
140 2wfh_A SLIT homolog 2 protein 99.2 6.4E-11 2.2E-15 114.9 10.2 125 469-617 13-138 (193)
141 4b8c_D Glucose-repressible alc 99.2 2.7E-11 9.3E-16 142.3 8.1 109 463-579 221-329 (727)
142 2chg_A Replication factor C sm 99.1 2.5E-10 8.6E-15 113.8 13.4 184 96-301 18-205 (226)
143 1dce_A Protein (RAB geranylger 99.1 1.1E-10 3.7E-15 132.8 10.8 104 467-580 442-547 (567)
144 1w8a_A SLIT protein; signaling 99.1 6.8E-11 2.3E-15 114.7 7.9 125 469-617 11-138 (192)
145 1ds9_A Outer arm dynein; leuci 99.1 2.2E-11 7.6E-16 118.9 4.0 111 485-618 43-153 (198)
146 1ds9_A Outer arm dynein; leuci 99.1 9.6E-12 3.3E-16 121.6 0.9 126 445-579 24-153 (198)
147 2o6r_A Variable lymphocyte rec 99.0 7.5E-10 2.6E-14 105.9 9.9 126 468-617 9-136 (177)
148 3sb4_A Hypothetical leucine ri 99.0 1.7E-09 5.9E-14 114.7 12.6 89 690-796 225-317 (329)
149 2r9u_A Variable lymphocyte rec 99.0 7.1E-10 2.4E-14 105.5 8.1 102 469-579 15-118 (174)
150 3g39_A Variable lymphocyte rec 99.0 8.8E-10 3E-14 104.4 8.0 102 469-579 12-115 (170)
151 2r9u_A Variable lymphocyte rec 99.0 8.5E-10 2.9E-14 104.9 7.7 107 447-560 15-123 (174)
152 1sxj_B Activator 1 37 kDa subu 99.0 2.1E-09 7.2E-14 113.9 11.3 185 96-302 22-212 (323)
153 3g39_A Variable lymphocyte rec 98.9 2.5E-09 8.7E-14 101.2 7.4 104 447-557 12-117 (170)
154 1iqp_A RFCS; clamp loader, ext 98.8 9.7E-09 3.3E-13 108.9 10.2 185 96-303 26-215 (327)
155 3sb4_A Hypothetical leucine ri 98.8 1.7E-08 5.9E-13 107.0 11.9 284 443-780 24-327 (329)
156 3te6_A Regulatory protein SIR3 98.8 6.1E-08 2.1E-12 100.0 14.6 169 96-268 21-212 (318)
157 4fdw_A Leucine rich hypothetic 98.8 3.7E-07 1.3E-11 99.0 20.8 270 464-819 111-393 (401)
158 4fdw_A Leucine rich hypothetic 98.7 8E-08 2.7E-12 104.2 15.1 120 445-576 114-236 (401)
159 1hqc_A RUVB; extended AAA-ATPa 98.7 1.1E-07 3.8E-12 100.5 15.4 175 96-303 13-214 (324)
160 2chq_A Replication factor C sm 98.7 1.1E-07 3.8E-12 100.3 13.9 180 96-301 18-205 (319)
161 1jr3_A DNA polymerase III subu 98.6 1.9E-07 6.4E-12 100.9 13.9 193 96-300 17-221 (373)
162 2ifg_A High affinity nerve gro 98.6 5.4E-08 1.8E-12 104.1 8.7 100 471-579 13-116 (347)
163 3un9_A NLR family member X1; l 98.6 1.3E-08 4.5E-13 109.3 1.8 156 445-618 73-252 (372)
164 1jbk_A CLPB protein; beta barr 98.5 9.7E-08 3.3E-12 92.3 7.6 45 96-140 23-67 (195)
165 3un9_A NLR family member X1; l 98.5 4.8E-08 1.6E-12 104.9 4.4 136 465-618 71-224 (372)
166 2ifg_A High affinity nerve gro 98.5 2E-07 6.7E-12 99.7 8.8 103 448-556 12-117 (347)
167 3bos_A Putative DNA replicatio 98.5 1.4E-07 4.6E-12 95.1 6.6 172 96-300 29-217 (242)
168 2z4s_A Chromosomal replication 98.4 1.1E-06 3.7E-11 96.4 11.3 183 96-299 106-305 (440)
169 3pvs_A Replication-associated 98.3 5.4E-06 1.9E-10 90.6 15.9 174 96-300 27-215 (447)
170 1sxj_A Activator 1 95 kDa subu 98.3 2.2E-06 7.4E-11 96.3 13.0 188 96-300 40-253 (516)
171 3h4m_A Proteasome-activating n 98.3 2.2E-06 7.5E-11 88.6 12.1 176 96-299 18-230 (285)
172 1sxj_D Activator 1 41 kDa subu 98.3 1.3E-06 4.6E-11 93.4 10.1 191 96-299 38-234 (353)
173 3syl_A Protein CBBX; photosynt 98.3 4.1E-06 1.4E-10 87.7 12.5 152 96-269 32-219 (309)
174 1sxj_E Activator 1 40 kDa subu 98.2 3.4E-06 1.1E-10 90.3 11.0 194 96-300 15-237 (354)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.2 4.1E-05 1.4E-09 77.8 18.0 179 96-299 7-221 (262)
176 2ra8_A Uncharacterized protein 98.2 2.3E-06 7.9E-11 90.9 8.5 35 690-725 278-318 (362)
177 3uk6_A RUVB-like 2; hexameric 98.2 7.2E-06 2.5E-10 88.2 12.6 195 96-299 45-302 (368)
178 4fs7_A Uncharacterized protein 98.2 1.4E-05 4.9E-10 86.7 14.8 104 463-575 68-194 (394)
179 1a5t_A Delta prime, HOLB; zinc 98.1 2.5E-05 8.6E-10 82.4 15.2 169 100-299 7-204 (334)
180 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.5E-11 81.9 3.8 87 658-765 62-154 (176)
181 3d8b_A Fidgetin-like protein 1 98.1 4.3E-05 1.5E-09 81.3 17.0 179 96-301 85-296 (357)
182 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00014 4.9E-09 76.0 20.5 179 96-300 13-223 (322)
183 1sxj_C Activator 1 40 kDa subu 98.1 1.3E-05 4.6E-10 84.9 12.6 178 96-296 26-208 (340)
184 1d2n_A N-ethylmaleimide-sensit 98.1 2E-05 6.9E-10 80.6 13.3 166 96-292 34-229 (272)
185 1l8q_A Chromosomal replication 98.1 1.3E-05 4.4E-10 84.4 11.5 166 104-295 23-203 (324)
186 3b9p_A CG5977-PA, isoform A; A 98.1 9.8E-05 3.4E-09 76.5 17.5 176 96-300 22-233 (297)
187 3e4g_A ATP synthase subunit S, 98.1 2.2E-06 7.4E-11 79.8 4.0 88 690-790 60-154 (176)
188 3u61_B DNA polymerase accessor 98.0 2E-05 6.8E-10 83.0 12.0 175 96-298 27-214 (324)
189 3eie_A Vacuolar protein sortin 98.0 6E-05 2E-09 79.1 15.6 178 96-300 19-228 (322)
190 3cf0_A Transitional endoplasmi 98.0 9.7E-05 3.3E-09 76.6 16.8 173 96-295 16-223 (301)
191 2p65_A Hypothetical protein PF 98.0 9.1E-06 3.1E-10 77.7 8.3 45 96-140 23-67 (187)
192 3vfd_A Spastin; ATPase, microt 98.0 0.00017 6E-09 77.7 18.7 178 96-300 116-326 (389)
193 3pfi_A Holliday junction ATP-d 98.0 1.5E-05 5E-10 84.6 10.0 171 96-300 30-227 (338)
194 2qp9_X Vacuolar protein sortin 97.9 0.00012 4.2E-09 77.7 15.9 176 96-300 52-261 (355)
195 2zan_A Vacuolar protein sortin 97.9 0.00025 8.6E-09 77.7 18.5 180 96-300 135-345 (444)
196 3rw6_A Nuclear RNA export fact 97.9 3.6E-06 1.2E-10 84.6 3.4 86 486-574 166-259 (267)
197 3qfl_A MLA10; coiled-coil, (CC 97.9 1.8E-05 6.3E-10 68.1 6.8 31 3-33 53-83 (115)
198 3pxg_A Negative regulator of g 97.9 9.8E-05 3.4E-09 81.6 14.0 148 96-269 181-340 (468)
199 4gt6_A Cell surface protein; l 97.9 0.00023 7.7E-09 77.1 16.8 107 463-575 60-169 (394)
200 4b4t_J 26S protease regulatory 97.9 0.00029 9.9E-09 74.5 16.6 170 96-293 149-354 (405)
201 2ra8_A Uncharacterized protein 97.8 5E-05 1.7E-09 80.6 10.2 58 513-574 168-227 (362)
202 2gno_A DNA polymerase III, gam 97.8 6.7E-05 2.3E-09 77.5 10.8 147 99-267 1-152 (305)
203 1qvr_A CLPB protein; coiled co 97.8 6.7E-05 2.3E-09 89.6 12.1 153 96-267 171-345 (854)
204 1io0_A Tropomodulin; LRR prote 97.8 1.6E-05 5.4E-10 76.0 5.4 109 463-578 33-163 (185)
205 3n70_A Transport activator; si 97.8 2.7E-05 9.3E-10 70.9 6.0 45 96-140 2-48 (145)
206 3hu3_A Transitional endoplasmi 97.7 0.00023 7.9E-09 78.5 14.2 177 96-299 205-414 (489)
207 4b4t_L 26S protease subunit RP 97.7 0.00032 1.1E-08 75.4 14.7 170 96-293 182-387 (437)
208 4b4t_H 26S protease regulatory 97.7 0.00051 1.8E-08 73.6 15.8 170 96-293 210-415 (467)
209 3ec2_A DNA replication protein 97.7 2.3E-05 8E-10 74.5 4.6 117 100-236 19-142 (180)
210 4b4t_I 26S protease regulatory 97.7 0.00055 1.9E-08 72.6 14.8 170 96-293 183-388 (437)
211 1lv7_A FTSH; alpha/beta domain 97.7 0.00099 3.4E-08 67.2 16.5 177 96-299 13-224 (257)
212 4b4t_K 26S protease regulatory 97.6 0.00046 1.6E-08 74.1 14.2 170 96-293 173-379 (428)
213 1r6b_X CLPA protein; AAA+, N-t 97.6 0.0005 1.7E-08 81.3 15.6 153 96-267 187-362 (758)
214 1io0_A Tropomodulin; LRR prote 97.6 1.6E-05 5.4E-10 76.0 2.2 121 484-618 30-164 (185)
215 4b4t_M 26S protease regulatory 97.6 0.00034 1.1E-08 75.2 12.6 170 96-293 182-387 (434)
216 4fs7_A Uncharacterized protein 97.6 0.00036 1.2E-08 75.5 12.9 99 652-778 292-392 (394)
217 3pxi_A Negative regulator of g 97.6 0.00041 1.4E-08 81.9 14.3 151 96-269 181-340 (758)
218 2r62_A Cell division protease 97.6 9.5E-05 3.3E-09 75.3 7.3 172 96-294 12-219 (268)
219 1ofh_A ATP-dependent HSL prote 97.5 0.00052 1.8E-08 71.5 12.2 45 96-140 16-74 (310)
220 3rw6_A Nuclear RNA export fact 97.5 2.7E-05 9.3E-10 78.2 1.8 86 486-579 137-233 (267)
221 4h09_A Hypothetical leucine ri 97.5 0.004 1.4E-07 66.7 19.1 120 444-575 46-167 (379)
222 4gt6_A Cell surface protein; l 97.5 0.0025 8.6E-08 68.8 17.5 119 446-575 66-191 (394)
223 2w58_A DNAI, primosome compone 97.5 0.00022 7.5E-09 69.1 8.1 114 102-236 36-158 (202)
224 2ce7_A Cell division protein F 97.4 0.0024 8.4E-08 69.7 16.6 171 96-293 17-221 (476)
225 3co5_A Putative two-component 97.4 5.5E-05 1.9E-09 68.7 2.5 45 96-140 5-51 (143)
226 4fcw_A Chaperone protein CLPB; 97.4 0.00061 2.1E-08 71.0 10.4 60 96-158 18-86 (311)
227 2c9o_A RUVB-like 1; hexameric 97.3 0.0016 5.4E-08 71.7 12.7 45 96-140 38-87 (456)
228 2kjq_A DNAA-related protein; s 97.2 3.1E-05 1.1E-09 70.7 -1.2 55 97-157 20-74 (149)
229 1in4_A RUVB, holliday junction 97.2 0.0049 1.7E-07 64.7 15.1 171 96-300 26-223 (334)
230 1ojl_A Transcriptional regulat 97.2 0.00081 2.8E-08 69.5 8.6 45 96-140 3-49 (304)
231 3cf2_A TER ATPase, transitiona 97.2 0.0023 7.8E-08 74.2 13.1 170 96-293 205-407 (806)
232 3t15_A Ribulose bisphosphate c 97.0 0.0051 1.7E-07 63.1 13.0 26 115-140 35-60 (293)
233 3pxi_A Negative regulator of g 97.0 0.00044 1.5E-08 81.6 5.2 59 96-157 492-559 (758)
234 4h09_A Hypothetical leucine ri 97.0 0.015 5.2E-07 62.2 16.9 102 462-574 42-143 (379)
235 1iy2_A ATP-dependent metallopr 96.9 0.012 4E-07 60.0 14.3 170 96-293 41-245 (278)
236 1ixz_A ATP-dependent metallopr 96.8 0.012 4E-07 59.1 13.7 170 96-293 17-221 (254)
237 2dhr_A FTSH; AAA+ protein, hex 96.8 0.011 3.9E-07 64.8 14.2 167 96-293 32-236 (499)
238 1ypw_A Transitional endoplasmi 96.8 0.0046 1.6E-07 72.9 11.3 170 96-293 205-407 (806)
239 3m6a_A ATP-dependent protease 96.8 0.0056 1.9E-07 68.7 11.5 45 96-140 82-132 (543)
240 2x8a_A Nuclear valosin-contain 96.7 0.031 1.1E-06 56.5 15.7 149 96-268 11-192 (274)
241 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0012 4.2E-08 67.2 4.0 68 116-208 123-192 (331)
242 2cvh_A DNA repair and recombin 96.5 0.0077 2.6E-07 58.8 9.1 86 115-208 19-115 (220)
243 3hr8_A Protein RECA; alpha and 96.4 0.0068 2.3E-07 63.4 8.4 86 115-208 60-149 (356)
244 2qgz_A Helicase loader, putati 96.3 0.0033 1.1E-07 65.0 5.5 41 100-140 133-176 (308)
245 1jr3_D DNA polymerase III, del 96.3 0.02 6.9E-07 60.2 11.7 164 107-299 9-184 (343)
246 1n0w_A DNA repair protein RAD5 96.3 0.011 3.6E-07 58.8 9.0 92 115-208 23-129 (243)
247 1r6b_X CLPA protein; AAA+, N-t 96.2 0.013 4.6E-07 69.0 10.5 45 96-140 459-512 (758)
248 1g5t_A COB(I)alamin adenosyltr 96.2 0.0022 7.4E-08 60.4 2.9 118 116-237 28-163 (196)
249 2z43_A DNA repair and recombin 96.1 0.016 5.5E-07 60.4 9.3 91 115-207 106-212 (324)
250 2bjv_A PSP operon transcriptio 96.1 0.007 2.4E-07 61.2 6.3 60 96-158 7-68 (265)
251 1v5w_A DMC1, meiotic recombina 96.1 0.022 7.6E-07 59.7 10.3 91 115-207 121-228 (343)
252 2b8t_A Thymidine kinase; deoxy 96.0 0.0024 8.2E-08 62.1 2.5 113 115-237 11-126 (223)
253 3io5_A Recombination and repai 96.0 0.016 5.5E-07 58.8 8.5 87 117-209 29-122 (333)
254 1xp8_A RECA protein, recombina 96.0 0.015 5E-07 61.4 8.7 86 115-208 73-162 (366)
255 2zr9_A Protein RECA, recombina 95.9 0.017 5.9E-07 60.6 8.5 86 115-208 60-149 (349)
256 1qvr_A CLPB protein; coiled co 95.9 0.0091 3.1E-07 71.2 7.2 45 96-140 559-612 (854)
257 3ice_A Transcription terminati 95.9 0.0095 3.2E-07 62.0 6.3 99 106-208 163-271 (422)
258 1rz3_A Hypothetical protein rb 95.8 0.0096 3.3E-07 57.2 5.8 42 99-140 2-46 (201)
259 3rfe_A Platelet glycoprotein I 95.6 0.012 4.1E-07 51.9 5.1 53 522-577 12-66 (130)
260 1u94_A RECA protein, recombina 95.6 0.025 8.4E-07 59.4 8.2 85 115-207 62-150 (356)
261 3dm5_A SRP54, signal recogniti 95.5 0.065 2.2E-06 57.5 11.3 26 115-140 99-124 (443)
262 2px0_A Flagellar biosynthesis 95.5 0.04 1.4E-06 56.3 9.2 87 115-207 104-191 (296)
263 2ck3_D ATP synthase subunit be 95.5 0.098 3.4E-06 56.2 12.3 64 106-171 142-207 (482)
264 2i1q_A DNA repair and recombin 95.4 0.025 8.7E-07 58.9 7.7 91 115-207 97-213 (322)
265 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.036 1.2E-06 54.4 8.1 40 115-157 22-61 (235)
266 3cf2_A TER ATPase, transitiona 95.3 0.095 3.2E-06 60.8 12.5 169 96-292 478-682 (806)
267 3c8u_A Fructokinase; YP_612366 95.2 0.016 5.5E-07 56.0 5.0 38 103-140 7-46 (208)
268 2hf9_A Probable hydrogenase ni 95.1 0.022 7.4E-07 55.8 5.7 40 101-140 23-62 (226)
269 3lda_A DNA repair protein RAD5 95.1 0.05 1.7E-06 58.0 8.7 91 115-207 177-282 (400)
270 1qhx_A CPT, protein (chloramph 95.0 0.013 4.4E-07 55.0 3.6 24 117-140 4-27 (178)
271 3kb2_A SPBC2 prophage-derived 95.0 0.013 4.3E-07 54.6 3.5 24 117-140 2-25 (173)
272 1sky_E F1-ATPase, F1-ATP synth 95.0 0.066 2.3E-06 57.6 9.2 99 108-208 142-255 (473)
273 3kl4_A SRP54, signal recogniti 95.0 0.13 4.4E-06 55.2 11.4 25 116-140 97-121 (433)
274 2r44_A Uncharacterized protein 94.9 0.018 6E-07 60.4 4.7 43 96-140 28-70 (331)
275 3bh0_A DNAB-like replicative h 94.9 0.084 2.9E-06 54.6 9.7 52 115-171 67-118 (315)
276 1pzn_A RAD51, DNA repair and r 94.8 0.058 2E-06 56.6 8.3 92 115-208 130-241 (349)
277 3e70_C DPA, signal recognition 94.8 0.14 4.8E-06 53.0 10.9 26 115-140 128-153 (328)
278 2ga8_A Hypothetical 39.9 kDa p 94.8 0.032 1.1E-06 57.8 6.0 43 98-140 2-48 (359)
279 3sr0_A Adenylate kinase; phosp 94.8 0.083 2.8E-06 50.6 8.6 23 118-140 2-24 (206)
280 3vaa_A Shikimate kinase, SK; s 94.8 0.017 5.9E-07 55.3 3.7 26 115-140 24-49 (199)
281 2wsm_A Hydrogenase expression/ 94.8 0.024 8.1E-07 55.3 4.8 43 98-140 12-54 (221)
282 3nbx_X ATPase RAVA; AAA+ ATPas 94.8 0.024 8.1E-07 62.4 5.2 43 96-140 23-65 (500)
283 3lw7_A Adenylate kinase relate 94.8 0.016 5.4E-07 54.1 3.4 23 117-140 2-24 (179)
284 1vma_A Cell division protein F 94.7 0.08 2.7E-06 54.2 8.7 89 115-207 103-195 (306)
285 3hws_A ATP-dependent CLP prote 94.7 0.029 9.9E-07 59.6 5.6 45 96-140 16-75 (363)
286 1fx0_B ATP synthase beta chain 94.7 0.087 3E-06 56.8 9.1 100 107-208 155-276 (498)
287 1kgd_A CASK, peripheral plasma 94.6 0.02 6.8E-07 53.9 3.6 25 116-140 5-29 (180)
288 1zp6_A Hypothetical protein AT 94.5 0.021 7.2E-07 54.2 3.8 26 115-140 8-33 (191)
289 3trf_A Shikimate kinase, SK; a 94.5 0.02 6.8E-07 54.1 3.5 25 116-140 5-29 (185)
290 1kag_A SKI, shikimate kinase I 94.5 0.018 6E-07 53.7 3.0 24 117-140 5-28 (173)
291 1ly1_A Polynucleotide kinase; 94.5 0.022 7.4E-07 53.5 3.6 22 117-138 3-24 (181)
292 1um8_A ATP-dependent CLP prote 94.4 0.036 1.2E-06 59.1 5.7 45 96-140 22-96 (376)
293 1odf_A YGR205W, hypothetical 3 94.4 0.04 1.4E-06 56.1 5.6 27 114-140 29-55 (290)
294 3tqc_A Pantothenate kinase; bi 94.4 0.24 8.1E-06 50.9 11.4 43 98-140 70-116 (321)
295 3l0o_A Transcription terminati 94.4 0.018 6E-07 59.9 2.9 53 106-159 164-217 (427)
296 2xxa_A Signal recognition part 94.4 0.22 7.4E-06 53.7 11.6 26 115-140 99-124 (433)
297 2yvu_A Probable adenylyl-sulfa 94.4 0.024 8.3E-07 53.5 3.7 26 115-140 12-37 (186)
298 1ex7_A Guanylate kinase; subst 94.4 0.017 5.9E-07 54.3 2.6 24 117-140 2-25 (186)
299 3uie_A Adenylyl-sulfate kinase 94.3 0.029 9.8E-07 53.8 4.2 27 114-140 23-49 (200)
300 1nks_A Adenylate kinase; therm 94.3 0.024 8.3E-07 53.8 3.6 24 117-140 2-25 (194)
301 4eun_A Thermoresistant glucoki 94.3 0.026 8.9E-07 54.1 3.7 27 114-140 27-53 (200)
302 1g8p_A Magnesium-chelatase 38 94.3 0.021 7.3E-07 60.2 3.4 45 96-140 25-69 (350)
303 3t61_A Gluconokinase; PSI-biol 94.2 0.022 7.5E-07 54.7 3.0 25 116-140 18-42 (202)
304 1kht_A Adenylate kinase; phosp 94.2 0.026 8.9E-07 53.5 3.5 24 117-140 4-27 (192)
305 3rfe_A Platelet glycoprotein I 94.2 0.041 1.4E-06 48.4 4.4 52 494-552 12-66 (130)
306 2rhm_A Putative kinase; P-loop 94.1 0.031 1.1E-06 53.1 3.9 25 116-140 5-29 (193)
307 3iij_A Coilin-interacting nucl 94.1 0.025 8.5E-07 53.1 3.2 25 116-140 11-35 (180)
308 3tau_A Guanylate kinase, GMP k 94.1 0.031 1.1E-06 53.9 3.9 26 115-140 7-32 (208)
309 1ye8_A Protein THEP1, hypothet 94.0 0.03 1E-06 52.4 3.5 23 118-140 2-24 (178)
310 2qor_A Guanylate kinase; phosp 94.0 0.027 9.2E-07 54.2 3.3 26 115-140 11-36 (204)
311 1via_A Shikimate kinase; struc 94.0 0.025 8.5E-07 52.9 2.9 24 117-140 5-28 (175)
312 1knq_A Gluconate kinase; ALFA/ 94.0 0.035 1.2E-06 51.8 3.9 25 116-140 8-32 (175)
313 1zuh_A Shikimate kinase; alpha 94.0 0.031 1E-06 51.8 3.5 26 115-140 6-31 (168)
314 3tr0_A Guanylate kinase, GMP k 93.9 0.034 1.2E-06 53.4 3.9 25 116-140 7-31 (205)
315 2ffh_A Protein (FFH); SRP54, s 93.9 0.14 4.7E-06 54.9 8.9 25 116-140 98-122 (425)
316 2ze6_A Isopentenyl transferase 93.9 0.031 1E-06 55.8 3.6 24 117-140 2-25 (253)
317 2jaq_A Deoxyguanosine kinase; 93.9 0.031 1.1E-06 53.6 3.5 23 118-140 2-24 (205)
318 1gvn_B Zeta; postsegregational 93.9 0.055 1.9E-06 55.1 5.4 26 115-140 32-57 (287)
319 3cmu_A Protein RECA, recombina 93.9 0.12 4.1E-06 65.5 9.3 86 115-208 1426-1515(2050)
320 1j8m_F SRP54, signal recogniti 93.8 0.23 7.8E-06 50.6 9.9 89 116-207 98-189 (297)
321 2yhs_A FTSY, cell division pro 93.8 0.24 8.1E-06 53.7 10.4 26 115-140 292-317 (503)
322 2c95_A Adenylate kinase 1; tra 93.8 0.036 1.2E-06 52.8 3.7 26 115-140 8-33 (196)
323 2bdt_A BH3686; alpha-beta prot 93.8 0.035 1.2E-06 52.6 3.6 23 117-139 3-25 (189)
324 1y63_A LMAJ004144AAA protein; 93.8 0.038 1.3E-06 52.1 3.8 24 116-139 10-33 (184)
325 3a00_A Guanylate kinase, GMP k 93.8 0.029 9.8E-07 53.1 3.0 24 117-140 2-25 (186)
326 1g41_A Heat shock protein HSLU 93.8 0.048 1.6E-06 58.6 4.9 45 96-140 16-74 (444)
327 3umf_A Adenylate kinase; rossm 93.8 0.039 1.3E-06 53.3 3.8 27 114-140 27-53 (217)
328 2bbw_A Adenylate kinase 4, AK4 93.7 0.036 1.2E-06 55.1 3.7 25 116-140 27-51 (246)
329 2iyv_A Shikimate kinase, SK; t 93.7 0.028 9.5E-07 53.0 2.7 24 117-140 3-26 (184)
330 1ukz_A Uridylate kinase; trans 93.7 0.042 1.4E-06 52.7 4.0 26 115-140 14-39 (203)
331 3ney_A 55 kDa erythrocyte memb 93.7 0.041 1.4E-06 52.1 3.8 26 115-140 18-43 (197)
332 3asz_A Uridine kinase; cytidin 93.7 0.041 1.4E-06 53.2 3.8 26 115-140 5-30 (211)
333 1tev_A UMP-CMP kinase; ploop, 93.7 0.039 1.3E-06 52.4 3.7 25 116-140 3-27 (196)
334 2j41_A Guanylate kinase; GMP, 93.6 0.042 1.5E-06 52.8 3.9 25 116-140 6-30 (207)
335 3fwy_A Light-independent proto 93.6 0.038 1.3E-06 56.9 3.7 40 114-156 46-85 (314)
336 1tue_A Replication protein E1; 93.6 0.054 1.9E-06 51.1 4.3 37 104-140 45-82 (212)
337 4gp7_A Metallophosphoesterase; 93.6 0.034 1.2E-06 51.7 3.0 22 115-136 8-29 (171)
338 2if2_A Dephospho-COA kinase; a 93.6 0.038 1.3E-06 53.0 3.5 22 117-138 2-23 (204)
339 3cm0_A Adenylate kinase; ATP-b 93.6 0.041 1.4E-06 51.9 3.6 24 117-140 5-28 (186)
340 1cke_A CK, MSSA, protein (cyti 93.6 0.038 1.3E-06 54.1 3.5 24 117-140 6-29 (227)
341 1e6c_A Shikimate kinase; phosp 93.6 0.033 1.1E-06 51.8 2.9 24 117-140 3-26 (173)
342 2bwj_A Adenylate kinase 5; pho 93.5 0.039 1.3E-06 52.6 3.5 25 116-140 12-36 (199)
343 1lvg_A Guanylate kinase, GMP k 93.5 0.034 1.1E-06 53.2 2.9 25 116-140 4-28 (198)
344 1uf9_A TT1252 protein; P-loop, 93.4 0.05 1.7E-06 52.1 4.0 26 114-139 6-31 (203)
345 2qt1_A Nicotinamide riboside k 93.4 0.047 1.6E-06 52.6 3.8 26 115-140 20-45 (207)
346 2plr_A DTMP kinase, probable t 93.4 0.047 1.6E-06 52.7 3.8 24 117-140 5-28 (213)
347 3vr4_D V-type sodium ATPase su 93.4 0.074 2.5E-06 56.7 5.5 99 107-208 141-258 (465)
348 1xjc_A MOBB protein homolog; s 93.4 0.048 1.7E-06 50.2 3.6 26 115-140 3-28 (169)
349 1pgv_A TMD-1, tropomodulin TMD 93.4 0.12 4.2E-06 48.7 6.4 84 463-551 38-136 (197)
350 3tlx_A Adenylate kinase 2; str 93.4 0.087 3E-06 52.1 5.8 27 114-140 27-53 (243)
351 1uj2_A Uridine-cytidine kinase 93.4 0.049 1.7E-06 54.3 4.0 27 114-140 20-46 (252)
352 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.048 1.7E-06 54.7 3.9 25 116-140 4-28 (260)
353 2vli_A Antibiotic resistance p 93.4 0.032 1.1E-06 52.4 2.5 25 116-140 5-29 (183)
354 2pt5_A Shikimate kinase, SK; a 93.3 0.047 1.6E-06 50.4 3.5 23 118-140 2-24 (168)
355 1qf9_A UMP/CMP kinase, protein 93.3 0.047 1.6E-06 51.7 3.6 25 116-140 6-30 (194)
356 2cdn_A Adenylate kinase; phosp 93.2 0.047 1.6E-06 52.3 3.5 25 116-140 20-44 (201)
357 1jjv_A Dephospho-COA kinase; P 93.2 0.047 1.6E-06 52.5 3.4 22 117-138 3-24 (206)
358 4a74_A DNA repair and recombin 93.2 0.14 4.9E-06 49.9 7.0 43 115-158 24-70 (231)
359 2pbr_A DTMP kinase, thymidylat 93.2 0.049 1.7E-06 51.7 3.5 23 118-140 2-24 (195)
360 1znw_A Guanylate kinase, GMP k 93.2 0.048 1.6E-06 52.5 3.4 27 114-140 18-44 (207)
361 4a1f_A DNAB helicase, replicat 93.1 0.22 7.5E-06 51.6 8.4 52 115-171 45-96 (338)
362 2p5t_B PEZT; postsegregational 93.1 0.064 2.2E-06 53.5 4.3 26 115-140 31-56 (253)
363 1zd8_A GTP:AMP phosphotransfer 93.1 0.054 1.8E-06 53.1 3.6 25 116-140 7-31 (227)
364 3aez_A Pantothenate kinase; tr 93.0 0.058 2E-06 55.5 4.0 27 114-140 88-114 (312)
365 2j37_W Signal recognition part 93.0 0.5 1.7E-05 51.8 11.5 25 116-140 101-125 (504)
366 1htw_A HI0065; nucleotide-bind 93.0 0.067 2.3E-06 48.8 3.9 27 114-140 31-57 (158)
367 4e22_A Cytidylate kinase; P-lo 93.0 0.06 2.1E-06 53.6 4.0 26 115-140 26-51 (252)
368 1zu4_A FTSY; GTPase, signal re 93.0 0.15 5.2E-06 52.5 7.1 26 115-140 104-129 (320)
369 2wwf_A Thymidilate kinase, put 93.0 0.059 2E-06 52.0 3.7 25 116-140 10-34 (212)
370 1aky_A Adenylate kinase; ATP:A 93.0 0.059 2E-06 52.4 3.7 25 116-140 4-28 (220)
371 2grj_A Dephospho-COA kinase; T 92.9 0.059 2E-06 51.1 3.5 26 115-140 11-36 (192)
372 1pgv_A TMD-1, tropomodulin TMD 92.9 0.078 2.7E-06 50.0 4.3 86 486-576 37-136 (197)
373 2jeo_A Uridine-cytidine kinase 92.9 0.065 2.2E-06 53.2 4.0 27 114-140 23-49 (245)
374 1nn5_A Similar to deoxythymidy 92.9 0.061 2.1E-06 52.0 3.7 25 116-140 9-33 (215)
375 1z6g_A Guanylate kinase; struc 92.9 0.052 1.8E-06 52.7 3.2 26 115-140 22-47 (218)
376 3fb4_A Adenylate kinase; psych 92.8 0.058 2E-06 52.3 3.5 23 118-140 2-24 (216)
377 1s96_A Guanylate kinase, GMP k 92.8 0.061 2.1E-06 52.2 3.5 26 115-140 15-40 (219)
378 3dl0_A Adenylate kinase; phosp 92.8 0.061 2.1E-06 52.1 3.6 23 118-140 2-24 (216)
379 1ls1_A Signal recognition part 92.8 0.26 8.7E-06 50.3 8.3 90 115-207 97-189 (295)
380 1zak_A Adenylate kinase; ATP:A 92.7 0.058 2E-06 52.6 3.3 25 116-140 5-29 (222)
381 2r9v_A ATP synthase subunit al 92.7 0.27 9.2E-06 53.1 8.6 97 107-208 165-277 (515)
382 2v54_A DTMP kinase, thymidylat 92.7 0.065 2.2E-06 51.3 3.5 25 116-140 4-28 (204)
383 2z0h_A DTMP kinase, thymidylat 92.6 0.065 2.2E-06 51.0 3.5 23 118-140 2-24 (197)
384 1gtv_A TMK, thymidylate kinase 92.6 0.036 1.2E-06 53.6 1.6 24 117-140 1-24 (214)
385 2qe7_A ATP synthase subunit al 92.6 0.36 1.2E-05 52.1 9.4 97 107-208 152-264 (502)
386 1rj9_A FTSY, signal recognitio 92.6 0.072 2.4E-06 54.6 3.8 26 115-140 101-126 (304)
387 3p32_A Probable GTPase RV1496/ 92.5 0.13 4.5E-06 54.1 6.0 37 104-140 65-103 (355)
388 1fx0_A ATP synthase alpha chai 92.5 0.16 5.4E-06 55.0 6.5 89 115-208 162-265 (507)
389 2i3b_A HCR-ntpase, human cance 92.5 0.059 2E-06 50.9 2.9 24 117-140 2-25 (189)
390 3k1j_A LON protease, ATP-depen 92.4 0.18 6.1E-06 57.4 7.3 43 96-140 42-84 (604)
391 1m7g_A Adenylylsulfate kinase; 92.4 0.12 4.2E-06 49.7 5.1 27 114-140 23-49 (211)
392 2onk_A Molybdate/tungstate ABC 92.3 0.078 2.7E-06 52.2 3.6 26 114-140 23-48 (240)
393 1np6_A Molybdopterin-guanine d 92.2 0.088 3E-06 48.9 3.7 25 116-140 6-30 (174)
394 1q57_A DNA primase/helicase; d 92.2 0.42 1.4E-05 53.0 9.9 53 115-171 241-293 (503)
395 2pez_A Bifunctional 3'-phospho 92.2 0.091 3.1E-06 49.1 3.8 25 116-140 5-29 (179)
396 3d3q_A TRNA delta(2)-isopenten 92.2 0.082 2.8E-06 54.6 3.7 24 117-140 8-31 (340)
397 3r20_A Cytidylate kinase; stru 92.2 0.081 2.8E-06 51.6 3.5 25 116-140 9-33 (233)
398 3end_A Light-independent proto 92.1 0.12 4E-06 53.3 4.9 42 113-157 38-79 (307)
399 3gqb_B V-type ATP synthase bet 92.1 0.28 9.5E-06 52.3 7.7 101 107-208 137-261 (464)
400 2f1r_A Molybdopterin-guanine d 92.1 0.051 1.7E-06 50.3 1.8 24 117-140 3-26 (171)
401 3nwj_A ATSK2; P loop, shikimat 92.1 0.07 2.4E-06 52.9 2.9 25 116-140 48-72 (250)
402 2ehv_A Hypothetical protein PH 92.0 0.08 2.7E-06 52.6 3.4 24 115-138 29-52 (251)
403 3ake_A Cytidylate kinase; CMP 92.0 0.088 3E-06 50.6 3.5 24 117-140 3-26 (208)
404 3b9q_A Chloroplast SRP recepto 91.9 0.097 3.3E-06 53.6 3.9 25 116-140 100-124 (302)
405 1vht_A Dephospho-COA kinase; s 91.9 0.11 3.6E-06 50.5 4.0 23 116-138 4-26 (218)
406 3be4_A Adenylate kinase; malar 91.9 0.09 3.1E-06 51.0 3.4 24 117-140 6-29 (217)
407 2c61_A A-type ATP synthase non 91.8 0.14 4.9E-06 54.9 5.2 100 107-207 142-258 (469)
408 3oaa_A ATP synthase subunit al 91.8 0.6 2E-05 50.3 9.9 98 107-208 152-264 (513)
409 2xb4_A Adenylate kinase; ATP-b 91.8 0.092 3.1E-06 51.2 3.5 23 118-140 2-24 (223)
410 1sq5_A Pantothenate kinase; P- 91.8 0.17 6E-06 52.0 5.7 27 114-140 78-104 (308)
411 2pcj_A ABC transporter, lipopr 91.8 0.076 2.6E-06 51.8 2.8 26 115-140 29-54 (224)
412 1e4v_A Adenylate kinase; trans 91.8 0.092 3.1E-06 50.8 3.5 23 118-140 2-24 (214)
413 1ak2_A Adenylate kinase isoenz 91.8 0.1 3.6E-06 51.2 3.9 25 116-140 16-40 (233)
414 3crm_A TRNA delta(2)-isopenten 91.8 0.097 3.3E-06 53.6 3.7 24 117-140 6-29 (323)
415 2f6r_A COA synthase, bifunctio 91.8 0.1 3.4E-06 52.9 3.8 24 115-138 74-97 (281)
416 3lnc_A Guanylate kinase, GMP k 91.7 0.068 2.3E-06 52.5 2.4 26 115-140 26-52 (231)
417 3tif_A Uncharacterized ABC tra 91.7 0.09 3.1E-06 51.7 3.2 26 115-140 30-55 (235)
418 1oix_A RAS-related protein RAB 91.7 0.098 3.4E-06 49.5 3.4 25 116-140 29-53 (191)
419 3iqw_A Tail-anchored protein t 91.7 0.25 8.4E-06 51.3 6.7 47 111-160 11-57 (334)
420 3exa_A TRNA delta(2)-isopenten 91.7 0.1 3.5E-06 52.9 3.7 25 116-140 3-27 (322)
421 3upu_A ATP-dependent DNA helic 91.7 0.26 8.8E-06 54.0 7.2 40 100-140 30-69 (459)
422 2ck3_A ATP synthase subunit al 91.5 0.42 1.4E-05 51.7 8.4 101 107-208 152-272 (510)
423 3a8t_A Adenylate isopentenyltr 91.5 0.1 3.5E-06 53.6 3.5 25 116-140 40-64 (339)
424 2q6t_A DNAB replication FORK h 91.5 0.68 2.3E-05 50.3 10.3 52 115-170 199-250 (444)
425 3io3_A DEHA2D07832P; chaperone 91.5 0.21 7.3E-06 52.1 6.0 49 111-160 13-61 (348)
426 3b85_A Phosphate starvation-in 91.5 0.074 2.5E-06 51.1 2.3 24 116-139 22-45 (208)
427 2dyk_A GTP-binding protein; GT 91.5 0.12 4E-06 47.1 3.6 24 117-140 2-25 (161)
428 4eaq_A DTMP kinase, thymidylat 91.5 0.2 6.8E-06 49.0 5.4 26 115-140 25-50 (229)
429 3cmu_A Protein RECA, recombina 91.4 0.38 1.3E-05 61.1 9.1 86 115-208 382-471 (2050)
430 2cbz_A Multidrug resistance-as 91.4 0.1 3.5E-06 51.4 3.2 26 115-140 30-55 (237)
431 3cmw_A Protein RECA, recombina 91.3 0.31 1E-05 61.1 8.0 87 115-209 731-821 (1706)
432 1cr0_A DNA primase/helicase; R 91.2 0.24 8E-06 50.7 6.0 53 114-170 33-85 (296)
433 2d2e_A SUFC protein; ABC-ATPas 91.2 0.11 3.8E-06 51.5 3.4 25 115-139 28-52 (250)
434 1b0u_A Histidine permease; ABC 91.2 0.11 3.7E-06 52.1 3.2 27 114-140 30-56 (262)
435 2wji_A Ferrous iron transport 91.1 0.12 4E-06 47.5 3.3 23 117-139 4-26 (165)
436 3gfo_A Cobalt import ATP-bindi 91.1 0.096 3.3E-06 52.7 2.8 26 115-140 33-58 (275)
437 1ji0_A ABC transporter; ATP bi 91.1 0.1 3.4E-06 51.5 2.9 26 115-140 31-56 (240)
438 2dr3_A UPF0273 protein PH0284; 91.1 0.14 4.9E-06 50.6 4.0 40 115-157 22-61 (247)
439 3mfy_A V-type ATP synthase alp 91.1 0.81 2.8E-05 49.9 10.0 58 106-168 216-275 (588)
440 1yrb_A ATP(GTP)binding protein 91.1 0.13 4.6E-06 51.4 3.9 26 115-140 13-38 (262)
441 2f9l_A RAB11B, member RAS onco 91.0 0.13 4.3E-06 49.1 3.5 24 117-140 6-29 (199)
442 2og2_A Putative signal recogni 91.0 0.13 4.6E-06 53.7 3.9 25 116-140 157-181 (359)
443 3foz_A TRNA delta(2)-isopenten 91.0 0.13 4.5E-06 52.0 3.7 25 116-140 10-34 (316)
444 1sgw_A Putative ABC transporte 91.0 0.087 3E-06 50.8 2.3 26 115-140 34-59 (214)
445 2olj_A Amino acid ABC transpor 91.0 0.11 3.9E-06 51.8 3.2 27 114-140 48-74 (263)
446 2zu0_C Probable ATP-dependent 91.0 0.13 4.6E-06 51.5 3.7 26 114-139 44-69 (267)
447 2pze_A Cystic fibrosis transme 90.9 0.11 3.6E-06 50.9 2.8 26 115-140 33-58 (229)
448 1g6h_A High-affinity branched- 90.9 0.1 3.6E-06 52.0 2.9 26 115-140 32-57 (257)
449 3bgw_A DNAB-like replicative h 90.9 0.47 1.6E-05 51.4 8.2 51 115-170 196-246 (444)
450 4g1u_C Hemin import ATP-bindin 90.9 0.11 3.6E-06 52.2 2.8 26 115-140 36-61 (266)
451 2zej_A Dardarin, leucine-rich 90.8 0.095 3.3E-06 49.2 2.4 22 118-139 4-25 (184)
452 1mv5_A LMRA, multidrug resista 90.8 0.13 4.3E-06 50.9 3.3 27 114-140 26-52 (243)
453 2ged_A SR-beta, signal recogni 90.8 0.25 8.5E-06 46.6 5.3 26 115-140 47-72 (193)
454 3vr4_A V-type sodium ATPase ca 90.8 1.1 3.7E-05 49.1 10.7 58 106-168 221-280 (600)
455 2ff7_A Alpha-hemolysin translo 90.8 0.11 3.8E-06 51.4 2.9 26 115-140 34-59 (247)
456 2eyu_A Twitching motility prot 90.7 0.22 7.5E-06 49.7 5.0 27 114-140 23-49 (261)
457 1vpl_A ABC transporter, ATP-bi 90.7 0.13 4.3E-06 51.3 3.2 27 114-140 39-65 (256)
458 2ce2_X GTPase HRAS; signaling 90.6 0.14 4.7E-06 46.7 3.2 23 118-140 5-27 (166)
459 2qi9_C Vitamin B12 import ATP- 90.6 0.12 4.1E-06 51.2 2.8 26 115-140 25-50 (249)
460 2ghi_A Transport protein; mult 90.5 0.13 4.6E-06 51.3 3.2 27 114-140 44-70 (260)
461 2ixe_A Antigen peptide transpo 90.5 0.14 4.6E-06 51.6 3.2 27 114-140 43-69 (271)
462 2r6a_A DNAB helicase, replicat 90.5 0.46 1.6E-05 51.9 7.7 50 115-168 202-251 (454)
463 2v9p_A Replication protein E1; 90.5 0.16 5.5E-06 51.7 3.8 27 114-140 124-150 (305)
464 1ltq_A Polynucleotide kinase; 90.5 0.15 5E-06 52.4 3.6 24 117-140 3-26 (301)
465 3sop_A Neuronal-specific septi 90.4 0.15 5.1E-06 51.3 3.4 23 118-140 4-26 (270)
466 2qmh_A HPR kinase/phosphorylas 90.4 0.14 4.9E-06 48.0 3.0 25 116-140 34-58 (205)
467 2yz2_A Putative ABC transporte 90.4 0.14 4.8E-06 51.3 3.2 26 115-140 32-57 (266)
468 1svm_A Large T antigen; AAA+ f 90.3 0.28 9.7E-06 51.6 5.6 27 114-140 167-193 (377)
469 3lv8_A DTMP kinase, thymidylat 90.3 0.33 1.1E-05 47.4 5.8 36 116-153 27-62 (236)
470 2nq2_C Hypothetical ABC transp 90.3 0.13 4.3E-06 51.2 2.8 26 115-140 30-55 (253)
471 1tq4_A IIGP1, interferon-induc 90.3 0.22 7.5E-06 53.1 4.8 26 114-139 67-92 (413)
472 1zj6_A ADP-ribosylation factor 90.3 0.27 9.3E-06 46.0 5.0 34 105-139 6-39 (187)
473 1z2a_A RAS-related protein RAB 90.2 0.15 5.1E-06 46.6 3.1 24 117-140 6-29 (168)
474 2wjg_A FEOB, ferrous iron tran 90.2 0.16 5.4E-06 47.7 3.4 23 117-139 8-30 (188)
475 1p9r_A General secretion pathw 90.2 0.44 1.5E-05 51.0 7.1 29 112-140 163-191 (418)
476 2ihy_A ABC transporter, ATP-bi 90.2 0.13 4.4E-06 51.9 2.8 26 115-140 46-71 (279)
477 4gzl_A RAS-related C3 botulinu 90.2 0.17 5.9E-06 48.3 3.6 36 105-140 19-54 (204)
478 1q3t_A Cytidylate kinase; nucl 90.2 0.19 6.3E-06 49.5 3.9 26 115-140 15-40 (236)
479 1nlf_A Regulatory protein REPA 90.2 0.15 5.1E-06 51.6 3.3 26 115-140 29-54 (279)
480 1a7j_A Phosphoribulokinase; tr 90.2 0.083 2.9E-06 53.8 1.4 26 115-140 4-29 (290)
481 2r8r_A Sensor protein; KDPD, P 90.2 0.28 9.5E-06 47.2 4.9 24 117-140 7-30 (228)
482 3con_A GTPase NRAS; structural 90.0 0.16 5.5E-06 47.7 3.2 24 117-140 22-45 (190)
483 4tmk_A Protein (thymidylate ki 90.0 0.4 1.4E-05 46.1 5.9 24 117-140 4-27 (213)
484 3zvl_A Bifunctional polynucleo 89.9 0.16 5.6E-06 54.7 3.5 27 114-140 256-282 (416)
485 4edh_A DTMP kinase, thymidylat 89.9 0.45 1.5E-05 45.7 6.2 25 116-140 6-30 (213)
486 2nzj_A GTP-binding protein REM 89.8 0.15 5.2E-06 47.0 2.8 24 117-140 5-28 (175)
487 1cp2_A CP2, nitrogenase iron p 89.8 0.32 1.1E-05 48.8 5.3 37 117-156 2-38 (269)
488 1fzq_A ADP-ribosylation factor 89.7 0.24 8E-06 46.3 4.1 26 114-139 14-39 (181)
489 1u8z_A RAS-related protein RAL 89.7 0.18 6.1E-06 46.1 3.2 24 117-140 5-28 (168)
490 2ocp_A DGK, deoxyguanosine kin 89.7 0.21 7.3E-06 49.2 3.9 25 116-140 2-26 (241)
491 2gj8_A MNME, tRNA modification 89.7 0.17 5.8E-06 46.9 3.0 24 117-140 5-28 (172)
492 2lkc_A Translation initiation 89.7 0.22 7.5E-06 46.1 3.8 26 115-140 7-32 (178)
493 3eph_A TRNA isopentenyltransfe 89.6 0.2 6.8E-06 52.8 3.8 24 117-140 3-26 (409)
494 3f9v_A Minichromosome maintena 89.6 0.11 3.6E-06 58.9 1.7 45 96-140 296-351 (595)
495 1r8s_A ADP-ribosylation factor 89.5 0.2 6.8E-06 45.7 3.3 23 118-140 2-24 (164)
496 1m7b_A RND3/RHOE small GTP-bin 89.5 0.19 6.3E-06 47.1 3.2 24 117-140 8-31 (184)
497 1c1y_A RAS-related protein RAP 89.5 0.19 6.4E-06 45.9 3.1 23 118-140 5-27 (167)
498 1u0j_A DNA replication protein 89.5 0.37 1.3E-05 47.7 5.3 36 105-140 91-128 (267)
499 1z08_A RAS-related protein RAB 89.5 0.19 6.4E-06 46.1 3.1 24 117-140 7-30 (170)
500 3cmw_A Protein RECA, recombina 89.5 0.5 1.7E-05 59.2 7.7 85 115-207 1430-1518(1706)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.1e-46 Score=427.85 Aligned_cols=304 Identities=14% Similarity=0.130 Sum_probs=248.3
Q ss_pred cchHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHh--hcccCCCCCCeEEEEEecCcc--CHHHHHHHHHH
Q 003265 98 VGLQSQLEQVWTCLVEE---SAGIIGLYGMGGVGKTTLLTHINN--KFLESPTNFDCVIWVVVSKDL--RLEKLQEDIGK 170 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~ 170 (835)
|||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +. .+..+|+.++||++++.+ +...++..|++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999753 679999999999999999999998 34 568899999999999985 88999999999
Q ss_pred HhCCCCC-----CCCCCCHHHHHHHHHHHhcCC-cEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhhccC
Q 003265 171 KIGLVGD-----SWKSRSAEEKALDIFRSLRGK-RIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSME 244 (835)
Q Consensus 171 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~ 244 (835)
+++.... .....+...+...+++.|+++ ||||||||||+..++ . ++ ..+||+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~----~~--~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R----WA--QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H----HH--HHTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c----cc--ccCCCEEEEEcCCHHHHHHcC
Confidence 9986521 122345677889999999996 999999999997654 1 11 226899999999999998876
Q ss_pred -CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHh------hhC
Q 003265 245 -ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQ------FAG 317 (835)
Q Consensus 245 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~------~~~ 317 (835)
....|+|++|+.++||+||.+.++... .++++.+++++|+++|+|+||||+++|+.++.+ .. +|.. ...
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNKLESR 358 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHHhhcc
Confidence 446799999999999999999987653 246788999999999999999999999998775 22 2222 111
Q ss_pred CCcchhhHHHHHHhcCCCchhhHHHh-----------hhccCCCCccccHHHHHHHHHhc--CCccCCc-ccchHhhHHH
Q 003265 318 LGKEVYPLLKFSYDSLQNDTIRSCFL-----------YCCLYSEDYGILKWDLIDCWIGE--GFLGESD-RFGAENQGYD 383 (835)
Q Consensus 318 ~~~~~~~~l~~sy~~L~~~~~k~cf~-----------~~~~fp~~~~i~~~~li~~W~a~--g~i~~~~-~~~~~~~~~~ 383 (835)
....+..++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ....++.++
T Consensus 359 ~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-
T ss_pred cHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 245788999999999998 8999999 999999999999 8999999 9998744 555677777
Q ss_pred HHHHHHHhcccccc---cccccchhHHHHHHHHHHHhhh
Q 003265 384 ILDTLVRACLLEEV---EDDKVKMHDVIRDMALWITCEI 419 (835)
Q Consensus 384 ~~~~L~~~~ll~~~---~~~~~~mhdlv~~~a~~~~~~~ 419 (835)
+|++|+++||++.. ....|+|||+||++|++++.+.
T Consensus 433 ~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 433 RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 99999999999986 2357999999999999887653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-38 Score=362.71 Aligned_cols=285 Identities=15% Similarity=0.204 Sum_probs=230.7
Q ss_pred cccchHHHHHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCe-EEEEEecCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
..|||++++++|.++|.+ +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 359999999999999986 568999999999999999999999875 45678986 999999999998888888877543
Q ss_pred CCCCC----CC-----CCCHHHHHHHHHHHh---cCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhh
Q 003265 174 LVGDS----WK-----SRSAEEKALDIFRSL---RGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCG 241 (835)
Q Consensus 174 ~~~~~----~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~ 241 (835)
..... .. ..+.+.....+++.| +++|+||||||||+...|+.+. +||+||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------CCeEEEEeccChHHHH
Confidence 22100 00 112344556677655 7899999999999987787641 5899999999999876
Q ss_pred ccCCCceEEec------cCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcC-ccHHHHHh
Q 003265 242 SMEADRKFLVA------CLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYR-KKAEQWRQ 314 (835)
Q Consensus 242 ~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~-~~~~~w~~ 314 (835)
.+.....+.++ +|+.+|||+||.+.++... .++..+| |+|+||||+++|+.|+.+ .+..+|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 44433356666 8999999999999864321 2334444 999999999999999987 36788987
Q ss_pred hhCCCcchhhHHHHHHhcCCCchh-hHHHhhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHHHHHHhcc
Q 003265 315 FAGLGKEVYPLLKFSYDSLQNDTI-RSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDTLVRACL 393 (835)
Q Consensus 315 ~~~~~~~~~~~l~~sy~~L~~~~~-k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~L~~~~l 393 (835)
.. ...+..++.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||
T Consensus 350 ~~--~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~~L~eLvdRSL 416 (1221)
T 1vt4_I 350 VN--CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMVVVNKLHKYSL 416 (1221)
T ss_dssp CS--CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHHHHHHHHTSSS
T ss_pred CC--hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHHHHHHHHhhCC
Confidence 52 46799999999999999 67 99999999999999999999999998876 2358889999999999
Q ss_pred cccc-cccccchhHHHHHHH
Q 003265 394 LEEV-EDDKVKMHDVIRDMA 412 (835)
Q Consensus 394 l~~~-~~~~~~mhdlv~~~a 412 (835)
++.. ....|+|||++++++
T Consensus 417 Lq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 417 VEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SSBCSSSSEEBCCCHHHHHH
T ss_pred EEEeCCCCEEEehHHHHHHh
Confidence 9986 456899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-35 Score=373.22 Aligned_cols=297 Identities=21% Similarity=0.255 Sum_probs=241.6
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-CCCeEEEEEecCcc--CHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPT-NFDCVIWVVVSKDL--RLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~--~~~~~~~~i~~ 170 (835)
.||||++++++|.++|.. +..++|+|+||||+||||||+++|++...... .|+.++||++++.. +....+..++.
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 204 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM 204 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHH
Confidence 699999999999999963 57899999999999999999999988522234 55678899998854 34555777777
Q ss_pred HhCCCCC--CCCCCCHHHHHHHHHHHhcCC--cEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhhc-cCC
Q 003265 171 KIGLVGD--SWKSRSAEEKALDIFRSLRGK--RIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGS-MEA 245 (835)
Q Consensus 171 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~-~~~ 245 (835)
.+..... .....+.+.+...++..+.++ |+||||||||+..+|..+ ++||+||||||++.++.. +..
T Consensus 205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCCSC
T ss_pred HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhcCC
Confidence 7765432 123456788888999999877 999999999988776653 468999999999999854 456
Q ss_pred CceEEecc-CChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHh----hhC---
Q 003265 246 DRKFLVAC-LSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQ----FAG--- 317 (835)
Q Consensus 246 ~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~----~~~--- 317 (835)
...+.+.+ |++++|++||...++... +...+++++|+++|+|+||||+.+|+.|+.+. ..|+. ...
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 67899996 999999999999886433 34456799999999999999999999999864 23444 111
Q ss_pred ---------CCcchhhHHHHHHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHHHHH
Q 003265 318 ---------LGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDILDTL 388 (835)
Q Consensus 318 ---------~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~~~L 388 (835)
..+.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++.+|.++ ++.+++++++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L 418 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEF 418 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHH
Confidence 013588999999999999 899999999999999999999999999653 46788999999
Q ss_pred HHhccccccccc---ccchhHHHHHHHHHHHhh
Q 003265 389 VRACLLEEVEDD---KVKMHDVIRDMALWITCE 418 (835)
Q Consensus 389 ~~~~ll~~~~~~---~~~mhdlv~~~a~~~~~~ 418 (835)
+++||++..... .|+||+++|++++..+.+
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 999999876333 599999999999887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=322.54 Aligned_cols=291 Identities=22% Similarity=0.289 Sum_probs=227.2
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccC-CCCC-CeEEEEEecCccCHHHHHHH---H
Q 003265 96 KVVGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLES-PTNF-DCVIWVVVSKDLRLEKLQED---I 168 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~---i 168 (835)
.||||++++++|.++|.. +..++|+|+|+||+||||||++++++. .. ...| +.++|++++.. +...+... +
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 799999999999999974 567899999999999999999999875 33 4678 58999999875 33333333 3
Q ss_pred HHHhCCCC--CCCCCCCHHHHHHHHHHHhcC--CcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhhhccC
Q 003265 169 GKKIGLVG--DSWKSRSAEEKALDIFRSLRG--KRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSME 244 (835)
Q Consensus 169 ~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~~ 244 (835)
+..++... ......+.+.....+...+.+ +++||||||+|+...+..+ .++++||||||+..++..+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHhcC
Confidence 44554211 112345677778888888865 7999999999986655432 45899999999998876543
Q ss_pred CCceEEe---ccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHHhcCccHHHHHh----hhC
Q 003265 245 ADRKFLV---ACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAMAYRKKAEQWRQ----FAG 317 (835)
Q Consensus 245 ~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l~~~~~~~~w~~----~~~ 317 (835)
...+.+ ++|+.+|+++||.+.++... ....+.+.+|+++|+|+||||+.+|+.++... ..|+. ...
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~ 347 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQN 347 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHS
T ss_pred -CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHH
Confidence 344555 58999999999999987532 22346789999999999999999999998753 24554 111
Q ss_pred ------------CCcchhhHHHHHHhcCCCchhhHHHhhhccCCCCccccHHHHHHHHHhcCCccCCcccchHhhHHHHH
Q 003265 318 ------------LGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGFLGESDRFGAENQGYDIL 385 (835)
Q Consensus 318 ------------~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~~~ 385 (835)
....+..++..||+.||+ +.|.||++||+||+++.|+...+..+|.++ .+.+..++
T Consensus 348 ~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l 415 (591)
T 1z6t_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDIL 415 (591)
T ss_dssp CCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHH
T ss_pred hHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHH
Confidence 123678899999999999 899999999999999999999999999542 34678899
Q ss_pred HHHHHhcccccc---cccccchhHHHHHHHHHH
Q 003265 386 DTLVRACLLEEV---EDDKVKMHDVIRDMALWI 415 (835)
Q Consensus 386 ~~L~~~~ll~~~---~~~~~~mhdlv~~~a~~~ 415 (835)
++|+++||+... ....|+||+++|++++..
T Consensus 416 ~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999999865 234799999999999876
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.5e-24 Score=231.27 Aligned_cols=304 Identities=16% Similarity=0.153 Sum_probs=217.0
Q ss_pred cccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhc
Q 003265 440 VKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSS 519 (835)
Q Consensus 440 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~ 519 (835)
...+.+++++++.++.+..++....+++|++|++++|....++. |.++++|++|++++| .+..+| .+..+. +
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n----~i~~~~-~~~~l~-~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN----KITDIS-ALQNLT-N 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS----CCCCCG-GGTTCT-T
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC----cccCch-HHcCCC-c
Confidence 34556888899988888888777888899999998765446655 788899999999998 777775 578887 9
Q ss_pred ccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchH
Q 003265 520 LQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQ 599 (835)
Q Consensus 520 L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (835)
|++|++++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++++|.+.. ..
T Consensus 112 L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-----------------~~ 171 (347)
T 4fmz_A 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-----------------VT 171 (347)
T ss_dssp CSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CG
T ss_pred CCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-----------------ch
Confidence 9999999998888876 88889999999998866666665 8888999999998887653 12
Q ss_pred hhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchh
Q 003265 600 ELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAE 679 (835)
Q Consensus 600 ~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~ 679 (835)
.+..+++|+.|+++.+....+.. ....++|+.|.++++.... .. .+..+++|+.|++++|.... +.. .
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~~---~~~~~~~L~~L~l~~n~l~~-~~~--~- 239 (347)
T 4fmz_A 172 PIANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITD-IT---PVANMTRLNSLKIGNNKITD-LSP--L- 239 (347)
T ss_dssp GGGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCC-CG---GGGGCTTCCEEECCSSCCCC-CGG--G-
T ss_pred hhccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCC-Cc---hhhcCCcCCEEEccCCccCC-Ccc--h-
Confidence 26778888888888776655443 2234678888888765432 22 36677888888888765332 221 2
Q ss_pred cccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCC
Q 003265 680 IVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSR 759 (835)
Q Consensus 680 ~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 759 (835)
..+++|+.|++++| .+..++.+..+++|++|++++|. +..++ .+..+++|+.|++++
T Consensus 240 --------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 240 --------ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNN 296 (347)
T ss_dssp --------TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCS
T ss_pred --------hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCEEECcC
Confidence 25788888888888 67777778888888888888874 33331 356778888888888
Q ss_pred CCccccccCCCCCCCCccEEEEecCCCcCCCCCCCCCcccccceEEech
Q 003265 760 LPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSAKERKFVIRGR 808 (835)
Q Consensus 760 ~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~~ 808 (835)
|.-....+.....+++|+.|+++ +|+ ++.+|.......++.+.+.++
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~-~n~-l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLS-QNH-ITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECC-SSS-CCCCGGGGGCTTCSEESSSCC
T ss_pred CcCCCcChhHhhccccCCEEEcc-CCc-cccccChhhhhccceeehhhh
Confidence 75333333334567888888888 664 666544222225666655543
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.5e-23 Score=223.38 Aligned_cols=298 Identities=17% Similarity=0.187 Sum_probs=239.9
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
..+...+..+..++......+++++++.+|.+..++....+++|++|++++|....++ .|.++++|++|++++|
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n---- 120 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNED---- 120 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTS----
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCC----
Confidence 4455566667777777788899999999999999888899999999999977544654 3899999999999999
Q ss_pred cccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccC
Q 003265 505 SSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEA 584 (835)
Q Consensus 505 ~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 584 (835)
.+..+|. +..+. +|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|.+..
T Consensus 121 ~i~~~~~-~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~---- 191 (347)
T 4fmz_A 121 NISDISP-LANLT-KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED---- 191 (347)
T ss_dssp CCCCCGG-GTTCT-TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC----
T ss_pred cccCchh-hccCC-ceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc----
Confidence 8888876 88888 999999999954444556999999999999999 6777877 8999999999999998763
Q ss_pred CCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceec
Q 003265 585 PEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGI 664 (835)
Q Consensus 585 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 664 (835)
+..+..+++|+.|+++.+....+.. ....++|+.|++++|.... .+ .+..+++|+.|++
T Consensus 192 -------------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~-~~---~~~~l~~L~~L~l 250 (347)
T 4fmz_A 192 -------------ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITD-LS---PLANLSQLTWLEI 250 (347)
T ss_dssp -------------CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-CG---GGTTCTTCCEEEC
T ss_pred -------------cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCC-Cc---chhcCCCCCEEEC
Confidence 2237789999999999887665544 2334689999999986543 33 3778899999999
Q ss_pred ccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCccccc
Q 003265 665 DRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMG 744 (835)
Q Consensus 665 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 744 (835)
++|.. ..+ ... ..+++|+.|++++| .+..++.+..+++|+.|++++|......+.
T Consensus 251 ~~n~l-~~~--~~~---------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 305 (347)
T 4fmz_A 251 GTNQI-SDI--NAV---------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME------------ 305 (347)
T ss_dssp CSSCC-CCC--GGG---------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH------------
T ss_pred CCCcc-CCC--hhH---------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh------------
Confidence 98753 322 222 35899999999999 788888899999999999999865544433
Q ss_pred CCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCC
Q 003265 745 HISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCN 786 (835)
Q Consensus 745 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~ 786 (835)
.+..+++|+.|++++|+ +..++. ...+++|+.|+++ +|+
T Consensus 306 ~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~-~N~ 344 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFA-NQV 344 (347)
T ss_dssp HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSS-CC-
T ss_pred HhhccccCCEEEccCCc-cccccC-hhhhhccceeehh-hhc
Confidence 56779999999999986 555544 5678999999998 764
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=5.4e-23 Score=243.43 Aligned_cols=325 Identities=13% Similarity=0.122 Sum_probs=221.7
Q ss_pred cccCCceEEEEeeeCCccc------------------cCCC-C--CCCcceEEEeccCCcc-cccchhhcCCCcceEEEe
Q 003265 440 VKRWENVRRLSLMQNQIET------------------LSEV-P--KCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKM 497 (835)
Q Consensus 440 ~~~~~~~r~l~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L 497 (835)
...+.+++.|++++|.+.. +|.. . .+++|++|++++|... .+|.. |.++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 4567799999999999887 7665 4 7999999999987766 66644 899999999999
Q ss_pred ecCCCCcc-cc--ccCchHhhhh------hcccEEeeccccccccch--hhcCCCCCcEEecccccccCCcchHHhccCc
Q 003265 498 SYCGQSWS-SF--QLPVGMSELG------SSLQLFDISLTLIKELPE--ELKKLVNLKCLNLRWAYRLNKIPRQLISNYS 566 (835)
Q Consensus 498 s~~~~~~~-i~--~lp~~i~~l~------~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~ 566 (835)
++| . +. .+|..++.+. ++|++|+|++|.+..+|. .++++++|++|+|++| .+..+| . +++++
T Consensus 523 s~N----~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~ 595 (876)
T 4ecn_A 523 ACN----RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNV 595 (876)
T ss_dssp TTC----TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTS
T ss_pred cCC----CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCC
Confidence 999 5 66 4888887763 489999999999999998 8999999999999999 577899 4 99999
Q ss_pred ccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCC-CCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCC
Q 003265 567 RLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKY-LEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDAT 645 (835)
Q Consensus 567 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~ 645 (835)
+|++|++++|.+.. .+..+..+++ |+.|+++.|....++....... ..+|+.|++++|....
T Consensus 596 ~L~~L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 596 KLTDLKLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGS 658 (876)
T ss_dssp EESEEECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCSSCTTT
T ss_pred cceEEECcCCcccc----------------chHHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcCCcCCC
Confidence 99999999988763 1223555555 6666666665443322111100 0124555555443322
Q ss_pred cccc---------------------------cccccccccccceecccccccccccccchhcccccCCcccCCCccEEeE
Q 003265 646 SIID---------------------------ATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAI 698 (835)
Q Consensus 646 ~~~~---------------------------~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L 698 (835)
..+. ...+..+++|+.|++++|.. ..++...... ..+....+++|+.|+|
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~--~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKP--KDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSC--TTSCCTTGGGCCEEEC
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-CccChHHhcc--ccccccccCCccEEEC
Confidence 1110 01122445556666655432 2222211110 0000112348888999
Q ss_pred ecCCCCCCCc-hhh--ccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCC------CCccccccCC
Q 003265 699 YECHKLKDLT-FLV--FAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSR------LPILKSIYWK 769 (835)
Q Consensus 699 ~~c~~l~~l~-~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~ 769 (835)
++| .+..+| .+. .+++|+.|+|++|... .++. .+..+++|+.|+|++ +.-...+|..
T Consensus 736 s~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 736 RFN-KLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CSS-CCCCCCGGGSTTTCTTCCEEECCSSCCS-SCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CCC-CCccchHHhhhccCCCcCEEEeCCCCCC-ccch------------hhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 888 566776 354 7889999999887543 3543 567889999999976 3334566667
Q ss_pred CCCCCCccEEEEecCCCcCCCCCCCCCcccccceEEechh
Q 003265 770 PLPFTHLKEMAVTHGCNQLRKLPLDSNSAKERKFVIRGRE 809 (835)
Q Consensus 770 ~~~~~~L~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~~~ 809 (835)
...+++|+.|+++ +| +++.+|..... .|+.+.+.++.
T Consensus 802 l~~L~~L~~L~Ls-~N-~L~~Ip~~l~~-~L~~LdLs~N~ 838 (876)
T 4ecn_A 802 ITTCPSLIQLQIG-SN-DIRKVDEKLTP-QLYILDIADNP 838 (876)
T ss_dssp GGGCSSCCEEECC-SS-CCCBCCSCCCS-SSCEEECCSCT
T ss_pred HhcCCCCCEEECC-CC-CCCccCHhhcC-CCCEEECCCCC
Confidence 7778999999998 66 56999987653 68888888764
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=4.8e-23 Score=231.22 Aligned_cols=351 Identities=20% Similarity=0.212 Sum_probs=239.8
Q ss_pred ccEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecC
Q 003265 424 RNFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYC 500 (835)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~ 500 (835)
...+...+.++..+|. -+.++++|++++|.+..+.. ..++++|++|++++|... .+++..|.++++|++|+|++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3446666677778886 44799999999999988733 489999999999988765 777777999999999999999
Q ss_pred CCCcccccc-CchHhhhhhcccEEeeccccccc-cchh--hcCCCCCcEEecccccccCCc-chHHhccCcccceeeecC
Q 003265 501 GQSWSSFQL-PVGMSELGSSLQLFDISLTLIKE-LPEE--LKKLVNLKCLNLRWAYRLNKI-PRQLISNYSRLCVLRMFG 575 (835)
Q Consensus 501 ~~~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~-Lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~~i~~L~~L~~L~l~~ 575 (835)
.+..+ |..++.+. +|++|+|++|.++. +|.. ++.+++|++|++++| .+..+ |...+.++++|++|++++
T Consensus 90 ----~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 90 ----QFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp ----TTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTT
T ss_pred ----ccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCC
Confidence 77765 77899998 99999999999986 4544 899999999999999 56665 554488999999999999
Q ss_pred cCccCcccCCCccc---------ccCC----------cccchHhhcCCCCCCeEEEEecchhhH-HHHhhccccccccee
Q 003265 576 TGWFNFHEAPEDSV---------LFGG----------GEVLVQELLGLKYLEVLELTLGSYHAL-QILLSSNRLKSCIRS 635 (835)
Q Consensus 576 ~~~~~~~~~~~~~~---------~~~~----------~~~~~~~l~~L~~L~~L~l~~~~~~~l-~~l~~~~~~~~~L~~ 635 (835)
|.+.......-... .... .......+..+++|+.|+++.+..... ...........+|+.
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 98765322110000 0000 000001122345677777776654321 111111111246777
Q ss_pred eecCCCCCCCcccc--------ccccc--ccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCC
Q 003265 636 LFLPLAGDATSIID--------ATAFA--DLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLK 705 (835)
Q Consensus 636 L~l~~~~~~~~~~~--------~~~l~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 705 (835)
|.++++........ ...+. ..++|+.|++++|.... +.+..+ ..+++|+.|+|++| .+.
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~---------~~l~~L~~L~Ls~n-~l~ 312 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVF---------SHFTDLEQLTLAQN-EIN 312 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTT---------TTCTTCCEEECTTS-CCC
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhc---------ccCCCCCEEECCCC-ccc
Confidence 77776532211100 00111 23578888888765332 333333 35889999999998 455
Q ss_pred CCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccc-cCCCCCCCCccEEEEe
Q 003265 706 DLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSI-YWKPLPFTHLKEMAVT 782 (835)
Q Consensus 706 ~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~ 782 (835)
.++ .+..+++|++|+|++|.. +.++. ..+..+++|++|+|+++. +..+ +.....+++|+.|+++
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFL-GSIDS-----------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCC-CEECG-----------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred ccChhHhcCcccCCEEECCCCcc-CCcCh-----------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECC
Confidence 543 578899999999998854 43322 256788999999999974 5555 5566778999999998
Q ss_pred cCCCcCCCCCCCCC-cc-cccceEEech
Q 003265 783 HGCNQLRKLPLDSN-SA-KERKFVIRGR 808 (835)
Q Consensus 783 ~~C~~L~~lp~~~~-~~-~l~~~~i~~~ 808 (835)
+ ++++.+|.... .. .|+.+.+.++
T Consensus 380 -~-N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 380 -T-NQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp -S-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -C-CccccCCHhHhccCCcccEEEccCC
Confidence 5 58888887543 33 7888888764
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=3.7e-23 Score=241.02 Aligned_cols=323 Identities=14% Similarity=0.127 Sum_probs=216.7
Q ss_pred cccCCceEEEEeeeCCccc------------------cCCC-C--CCCcceEEEeccCCcc-cccchhhcCCCcceEEEe
Q 003265 440 VKRWENVRRLSLMQNQIET------------------LSEV-P--KCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKM 497 (835)
Q Consensus 440 ~~~~~~~r~l~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~L 497 (835)
.....+++.|++++|.+.. +|.. . ++++|++|++++|... .+|.. |.++++|++|+|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence 4456789999999999887 7665 5 7999999999977766 56654 889999999999
Q ss_pred ecCCCCcc-cc--ccCchHhhh------hhcccEEeeccccccccch--hhcCCCCCcEEecccccccC-CcchHHhccC
Q 003265 498 SYCGQSWS-SF--QLPVGMSEL------GSSLQLFDISLTLIKELPE--ELKKLVNLKCLNLRWAYRLN-KIPRQLISNY 565 (835)
Q Consensus 498 s~~~~~~~-i~--~lp~~i~~l------~~~L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l~-~lp~~~i~~L 565 (835)
++| . +. .+|..++.+ . +|++|++++|.++.+|. .++++++|++|++++| .+. .+| . ++.+
T Consensus 281 s~n----~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l 352 (636)
T 4eco_A 281 ACN----RGISGEQLKDDWQALADAPVGE-KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FGSE 352 (636)
T ss_dssp TTC----TTSCHHHHHHHHHHHHHSGGGG-TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CEEE
T ss_pred cCC----CCCccccchHHHHhhhccccCC-CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hCCC
Confidence 999 6 66 488888887 7 99999999999999998 8999999999999998 566 888 4 8899
Q ss_pred cccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCC-CCeEEEEecchhhHHHHhhcccccccceeeecCCCCCC
Q 003265 566 SRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKY-LEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDA 644 (835)
Q Consensus 566 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 644 (835)
++|++|++++|.+.. .+..+..+++ |+.|+++.+....++...... ...+|+.|++++|...
T Consensus 353 ~~L~~L~L~~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~-~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 353 IKLASLNLAYNQITE----------------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAK-SVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEESEEECCSSEEEE----------------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTT-CSSCEEEEECCSSCTT
T ss_pred CCCCEEECCCCcccc----------------ccHhhhhhcccCcEEEccCCcCcccchhhhhc-ccCccCEEECcCCcCC
Confidence 999999999887653 1223455555 666666655544332211100 0113455555544332
Q ss_pred Ccccc-----------------------------cccccccccccceecccccccccccccchhcccccCCcccCCCccE
Q 003265 645 TSIID-----------------------------ATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHL 695 (835)
Q Consensus 645 ~~~~~-----------------------------~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 695 (835)
...+. ...+..+++|+.|++++|... .+....... ..+....+++|+.
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~--~~~~~~~l~~L~~ 492 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKD--ENENFKNTYLLTS 492 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEE--TTEECTTGGGCCE
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcc--ccccccccCCccE
Confidence 22210 012223455555555544322 222211110 0000011238888
Q ss_pred EeEecCCCCCCCc-hhh--ccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCC------CCccccc
Q 003265 696 VAIYECHKLKDLT-FLV--FAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSR------LPILKSI 766 (835)
Q Consensus 696 L~L~~c~~l~~l~-~l~--~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l 766 (835)
|+|++| .+..+| .+. .+++|+.|+|++|.... ++. .+..+++|+.|+|++ +.-...+
T Consensus 493 L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 493 IDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp EECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred EECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cCh------------hhhcCCCCCEEECCCCcccccCcccccC
Confidence 888888 566666 344 78888888888875443 544 567789999999954 3345567
Q ss_pred cCCCCCCCCccEEEEecCCCcCCCCCCCCCcccccceEEech
Q 003265 767 YWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSAKERKFVIRGR 808 (835)
Q Consensus 767 ~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~~ 808 (835)
|.....+++|+.|+++ +| +++.+|.... ..|+.+.+.++
T Consensus 559 p~~l~~l~~L~~L~Ls-~N-~l~~ip~~~~-~~L~~L~Ls~N 597 (636)
T 4eco_A 559 PEGITLCPSLTQLQIG-SN-DIRKVNEKIT-PNISVLDIKDN 597 (636)
T ss_dssp CTTGGGCSSCCEEECC-SS-CCCBCCSCCC-TTCCEEECCSC
T ss_pred hHHHhcCCCCCEEECC-CC-cCCccCHhHh-CcCCEEECcCC
Confidence 7677788999999998 55 5699998765 46888888775
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=228.58 Aligned_cols=171 Identities=26% Similarity=0.272 Sum_probs=106.5
Q ss_pred EEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCC
Q 003265 426 FLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQS 503 (835)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~ 503 (835)
.+...+..+..+|.. -+..++.|++++|.+..++. +..+++|++|++++|....+++..|.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n--- 90 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN--- 90 (477)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS---
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC---
Confidence 344455555555542 23567777777777766532 366777777777755444554555677777777777777
Q ss_pred ccccccCch-HhhhhhcccEEeecccccccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCc
Q 003265 504 WSSFQLPVG-MSELGSSLQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNF 581 (835)
Q Consensus 504 ~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 581 (835)
.+..+|.. +..+. +|++|+|++|.+..+ |..+..+++|++|++++| .+..++...+..+++|++|++++|.+..
T Consensus 91 -~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 166 (477)
T 2id5_A 91 -RLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTS- 166 (477)
T ss_dssp -CCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSS-
T ss_pred -cCCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCcc-
Confidence 66666654 45665 777777777776665 445667777777777776 4555544346677777777777665542
Q ss_pred ccCCCcccccCCcccchHhhcCCCCCCeEEEEecchh
Q 003265 582 HEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 618 (835)
.....+..+++|+.|++..+...
T Consensus 167 --------------~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 167 --------------IPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp --------------CCHHHHTTCTTCCEEEEESCCCC
T ss_pred --------------cChhHhcccCCCcEEeCCCCcCc
Confidence 12234566677777777655443
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.4e-22 Score=224.50 Aligned_cols=141 Identities=17% Similarity=0.265 Sum_probs=97.0
Q ss_pred EEEEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcc
Q 003265 426 FLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWS 505 (835)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~ 505 (835)
.+...+..+..++......+++.|++++|.+..++....+++|++|++++|....+++ +.++++|++|+|++| .
T Consensus 50 ~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n----~ 123 (466)
T 1o6v_A 50 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN----Q 123 (466)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS----C
T ss_pred EEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC----C
Confidence 3444555566667667778888888888888887777888888888888665445554 788888888888888 7
Q ss_pred ccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 506 SFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 506 i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
+..+|. +..+. +|++|++++|.+..+|. ++.+++|++|++++ .+..++. +.++++|++|++++|.+.
T Consensus 124 l~~~~~-~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 124 ITDIDP-LKNLT-NLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCCCGG-GTTCT-TCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCChH-HcCCC-CCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC
Confidence 777765 77787 88888888888777653 55555555555542 2333333 555555555555555443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=235.40 Aligned_cols=360 Identities=18% Similarity=0.129 Sum_probs=229.4
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
..+...+.++..+|.. -+..+++|++++|.+..++. ..++++|++|++++|....+++..|.++++|++|+|++|
T Consensus 10 ~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-- 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-- 86 (570)
T ss_dssp TEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--
T ss_pred cEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC--
Confidence 4556666677777752 34678999999998887753 478899999999977644777777889999999999999
Q ss_pred CccccccC-chHhhhhhcccEEeeccccccccch-hhcCCCCCcEEecccccccCC--cchHHhccCcccceeeecCcCc
Q 003265 503 SWSSFQLP-VGMSELGSSLQLFDISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNK--IPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 503 ~~~i~~lp-~~i~~l~~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
.+..+| ..++.+. +|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|.+
T Consensus 87 --~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 87 --PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp --CCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred --cCCccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCcc
Confidence 777765 5677887 89999998888888865 5888888888888888 4554 5776 88888888888888765
Q ss_pred cCcccCC----------------Ccc----c-c---c-------------------------------------------
Q 003265 579 FNFHEAP----------------EDS----V-L---F------------------------------------------- 591 (835)
Q Consensus 579 ~~~~~~~----------------~~~----~-~---~------------------------------------------- 591 (835)
....... ... . . .
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 4321100 000 0 0 0
Q ss_pred ---------------------------CCcccchHhhcCCCCCCeEEEEecchhhHHHHhhc------------------
Q 003265 592 ---------------------------GGGEVLVQELLGLKYLEVLELTLGSYHALQILLSS------------------ 626 (835)
Q Consensus 592 ---------------------------~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~------------------ 626 (835)
......+..+..+++|+.|+++.+....++.....
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~ 321 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc
Confidence 00000112233455666666654443222111000
Q ss_pred ---------------------ccccccceeeecCCCCCCCcccccccccccccccceeccccccccccccc---------
Q 003265 627 ---------------------NRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKID--------- 676 (835)
Q Consensus 627 ---------------------~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~--------- 676 (835)
....++|+.|+++++...........+..+++|+.|++++|.... +...
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~ 400 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 400 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCE
Confidence 022356778888776543322111345567777777777654221 1111
Q ss_pred ----chhcccccC--CcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccch-hhcccCccCCCcccccCCCC
Q 003265 677 ----YAEIVRKRR--EPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAME-EIISVGKFDETPEVMGHISP 748 (835)
Q Consensus 677 ----~~~~~~~~~--~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 748 (835)
.......++ ....+++|+.|++++|.....++ .+..+++|++|+|++|.... .++. .+..
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~ 468 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTE 468 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS------------CCTT
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh------------hhhc
Confidence 000001111 12456778888888874333333 46778888888888876542 2332 6788
Q ss_pred CCcccEeecCCCCccccc-cCCCCCCCCccEEEEecCCCcCCCCCCCC-Ccc-cccceEEech
Q 003265 749 FGNLQTLDLSRLPILKSI-YWKPLPFTHLKEMAVTHGCNQLRKLPLDS-NSA-KERKFVIRGR 808 (835)
Q Consensus 749 ~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~~C~~L~~lp~~~-~~~-~l~~~~i~~~ 808 (835)
+++|+.|++++|. ++.+ +.....+++|+.|+++ +| +++.+|... ... .++.+.+.++
T Consensus 469 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~-~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 469 LRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMA-SN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECC-SS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCEEECCCCc-cccCChhhhhcccCCCEEeCC-CC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999999975 5555 5566788999999998 65 788887643 333 7888888764
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=9.8e-23 Score=223.54 Aligned_cols=302 Identities=14% Similarity=0.139 Sum_probs=237.8
Q ss_pred ccCCceEEEEeeeCCccccCCC--CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhh
Q 003265 441 KRWENVRRLSLMQNQIETLSEV--PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELG 517 (835)
Q Consensus 441 ~~~~~~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~ 517 (835)
....+++++++.++.+..++.. ..+++|++|++++|....++...|.++++|++|+|++| .+..+|. .++.+.
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCT
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC----CCCcCCHHHhcCCC
Confidence 3457899999999999988763 68999999999977655777777999999999999999 7887754 478888
Q ss_pred hcccEEeeccccccccchhh-cCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCccc
Q 003265 518 SSLQLFDISLTLIKELPEEL-KKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEV 596 (835)
Q Consensus 518 ~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 596 (835)
+|++|+|++|.++.+|..+ .++++|++|++++| .+..++...+.++++|++|++++|.+...
T Consensus 118 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 180 (390)
T 3o6n_A 118 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV--------------- 180 (390)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC---------------
T ss_pred -CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc---------------
Confidence 9999999999999998874 88999999999999 67777765689999999999999887641
Q ss_pred chHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceeccccccccccccc
Q 003265 597 LVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKID 676 (835)
Q Consensus 597 ~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~ 676 (835)
.+..+++|+.|+++.+....+ ....+|+.|+++++..... + ....++|+.|++++|.... ..
T Consensus 181 ---~~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~-~----~~~~~~L~~L~l~~n~l~~---~~ 242 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVV-R----GPVNVELTILKLQHNNLTD---TA 242 (390)
T ss_dssp ---CGGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEE-E----CCCCSSCCEEECCSSCCCC---CG
T ss_pred ---ccccccccceeeccccccccc-------CCCCcceEEECCCCeeeec-c----ccccccccEEECCCCCCcc---cH
Confidence 256678999999987765433 2346899999998765432 2 1234789999999875432 23
Q ss_pred chhcccccCCcccCCCccEEeEecCCCCCCC-c-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccE
Q 003265 677 YAEIVRKRREPFVFRSLHLVAIYECHKLKDL-T-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQT 754 (835)
Q Consensus 677 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 754 (835)
++ ..+++|+.|+|++| .+..+ + .+..+++|++|+|++|. ++.++. ....+|+|+.
T Consensus 243 ~l---------~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l~~L~~ 299 (390)
T 3o6n_A 243 WL---------LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKV 299 (390)
T ss_dssp GG---------GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEEC------------SSSCCTTCCE
T ss_pred HH---------cCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCc------------ccCCCCCCCE
Confidence 33 35899999999999 56554 3 58899999999999974 444443 4567899999
Q ss_pred eecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCCCCCcccccceEEech
Q 003265 755 LDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSAKERKFVIRGR 808 (835)
Q Consensus 755 L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~~ 808 (835)
|+++++ .+..++.....+++|+.|+++ +| +++.+|..... .++.+.+.++
T Consensus 300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~-~N-~i~~~~~~~~~-~L~~L~l~~N 349 (390)
T 3o6n_A 300 LDLSHN-HLLHVERNQPQFDRLENLYLD-HN-SIVTLKLSTHH-TLKNLTLSHN 349 (390)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECC-SS-CCCCCCCCTTC-CCSEEECCSS
T ss_pred EECCCC-cceecCccccccCcCCEEECC-CC-ccceeCchhhc-cCCEEEcCCC
Confidence 999997 677787766778999999998 65 68888854332 6888888764
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1e-22 Score=237.31 Aligned_cols=148 Identities=21% Similarity=0.182 Sum_probs=122.4
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
..+...+.++..+|.. -+.++++|++++|.+..++. ..++++|++|++++|....+++..|.++++|++|+|++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-- 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-- 90 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC--
T ss_pred CceEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC--
Confidence 3455666677777753 34789999999999988765 478999999999977655777777899999999999999
Q ss_pred Ccccccc-CchHhhhhhcccEEeeccccccccc-hhhcCCCCCcEEecccccccC--CcchHHhccCcccceeeecCcCc
Q 003265 503 SWSSFQL-PVGMSELGSSLQLFDISLTLIKELP-EELKKLVNLKCLNLRWAYRLN--KIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 503 ~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
.+..+ |..++.+. +|++|+|++|.++.+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+
T Consensus 91 --~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 91 --PIQSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp --CCCCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred --cccccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcc
Confidence 77777 77888998 9999999999998886 67899999999999999 555 46776 89999999999998876
Q ss_pred cC
Q 003265 579 FN 580 (835)
Q Consensus 579 ~~ 580 (835)
..
T Consensus 166 ~~ 167 (606)
T 3vq2_A 166 QT 167 (606)
T ss_dssp CE
T ss_pred ee
Confidence 54
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=227.11 Aligned_cols=310 Identities=17% Similarity=0.139 Sum_probs=237.9
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L 525 (835)
+.+...++.+..+|.. -.++++.|++++|....+++..|.++++|++|+|++| .+..+ |..++.+. +|++|+|
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~~~l~-~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN----IVSAVEPGAFNNLF-NLRTLGL 87 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS----CCCEECTTTTTTCT-TCCEEEC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC----ccCEeChhhhhCCc-cCCEEEC
Confidence 3566666777777653 3468999999977655777777999999999999999 78776 67888998 9999999
Q ss_pred ccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCC
Q 003265 526 SLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGL 604 (835)
Q Consensus 526 ~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 604 (835)
++|.++.+|.. +.++++|++|+|++| .+..++...+.++++|++|++++|.+... ....+..+
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l 151 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYI---------------SHRAFSGL 151 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEE---------------CTTSSTTC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCcccee---------------ChhhccCC
Confidence 99999999865 689999999999999 66766555599999999999999887642 22347789
Q ss_pred CCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhccccc
Q 003265 605 KYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKR 684 (835)
Q Consensus 605 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 684 (835)
++|+.|+++.+....+... .....++|+.|.+.++......+ ..+..+++|+.|++++|..+..+.....
T Consensus 152 ~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~------ 221 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTE--ALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCL------ 221 (477)
T ss_dssp TTCCEEEEESCCCSSCCHH--HHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTT------
T ss_pred CCCCEEECCCCcCcccChh--HhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccc------
Confidence 9999999998876654321 11224689999999886554333 4677889999999999887765543333
Q ss_pred CCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCc
Q 003265 685 REPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPI 762 (835)
Q Consensus 685 ~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 762 (835)
...+|+.|+|++| .+..++ .+..+++|+.|+|++|. +..++. ..+..+++|+.|+|+++ .
T Consensus 222 ----~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n-~ 283 (477)
T 2id5_A 222 ----YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-----------SMLHELLRLQEIQLVGG-Q 283 (477)
T ss_dssp ----TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-----------TSCTTCTTCCEEECCSS-C
T ss_pred ----cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-----------hhccccccCCEEECCCC-c
Confidence 2569999999999 677777 47899999999999875 444432 25678899999999986 4
Q ss_pred cccc-cCCCCCCCCccEEEEecCCCcCCCCCCCCC-cc-cccceEEech
Q 003265 763 LKSI-YWKPLPFTHLKEMAVTHGCNQLRKLPLDSN-SA-KERKFVIRGR 808 (835)
Q Consensus 763 l~~l-~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~-~~-~l~~~~i~~~ 808 (835)
+..+ +.....+++|+.|+++ +| +++.+|.... .. .|+.+.+.++
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVS-GN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECC-SS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred cceECHHHhcCcccCCEEECC-CC-cCceeCHhHcCCCcccCEEEccCC
Confidence 5555 4456678999999998 55 8888887542 22 6777777654
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.7e-22 Score=221.67 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEeeccccccccc-hhhcCCCC
Q 003265 465 CPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDISLTLIKELP-EELKKLVN 542 (835)
Q Consensus 465 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~ 542 (835)
+++++.|+++++....+|..+|.++++|++|+|++| .+..+|. .++.+. +|++|+|++|.++.+| ..++.+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n----~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL----QIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS----CCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC----cccccChhhccCCC-CcCEEECCCCCCCcCCHHHhcCCCC
Confidence 344445555433222444444444555555555554 4444332 344444 5555555555444442 22444455
Q ss_pred CcEEecccccccCCcchHHhccCcccceeeecCcCc
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
|++|++++| .+..+|.+.++++++|++|++++|.+
T Consensus 119 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 119 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 555555544 34444444334445555555544443
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.8e-22 Score=232.31 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=124.1
Q ss_pred EEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 427 LVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
+...+.++..+|... ...+++|++++|.+..++. ...+++|++|++++|....+++..|.++++|++|+|++|
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n---- 84 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN---- 84 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS----
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC----
Confidence 334455666777533 4789999999999988743 489999999999977655777777999999999999999
Q ss_pred cccccCch-HhhhhhcccEEeecccccccc--chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccC
Q 003265 505 SSFQLPVG-MSELGSSLQLFDISLTLIKEL--PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 505 ~i~~lp~~-i~~l~~~L~~L~L~~~~i~~L--p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
.+..+|.. ++.+. +|++|++++|.++.+ |..++++++|++|++++|..+..+|...+.++++|++|++++|.+..
T Consensus 85 ~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 85 HLSSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CCCSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ccCccCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 88888776 88998 999999999999854 67899999999999999965788886559999999999999988764
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=5.1e-22 Score=223.12 Aligned_cols=323 Identities=18% Similarity=0.152 Sum_probs=193.7
Q ss_pred CCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccE
Q 003265 443 WENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQL 522 (835)
Q Consensus 443 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~ 522 (835)
..+++.+.+.++.+..++....+++|++|++++|....+++ +.++++|++|++++| .+..++. ++.+. +|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n----~l~~~~~-~~~l~-~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN----QIADITP-LANLT-NLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS----CCCCCGG-GTTCT-TCCE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC----ccccChh-hcCCC-CCCE
Confidence 46899999999999999888899999999999776556665 899999999999999 8888876 88998 9999
Q ss_pred EeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcc-cCCCcc----cccCCcccc
Q 003265 523 FDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFH-EAPEDS----VLFGGGEVL 597 (835)
Q Consensus 523 L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~-~~~~~~----~~~~~~~~~ 597 (835)
|++++|.++.+|. +..+++|++|++++| .+..+|. +..+++|++|++.+ ...... +..-.. .........
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCC
Confidence 9999999999976 899999999999999 6888876 89999999999963 222110 000000 000011111
Q ss_pred hHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccc
Q 003265 598 VQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDY 677 (835)
Q Consensus 598 ~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 677 (835)
+..+..+++|+.|+++.+....+.. ....++|+.|++++|.... .+ .+..+++|+.|++++|.... +.+ .
T Consensus 192 ~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~~---~l~~l~~L~~L~l~~n~l~~-~~~-~ 261 (466)
T 1o6v_A 192 ISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD-IG---TLASLTNLTDLDLANNQISN-LAP-L 261 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-CG---GGGGCTTCSEEECCSSCCCC-CGG-G
T ss_pred ChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc-ch---hhhcCCCCCEEECCCCcccc-chh-h
Confidence 2234445555555555444332221 1123456666665554321 22 44555666666666543221 111 0
Q ss_pred hh-------------cccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCccccc
Q 003265 678 AE-------------IVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMG 744 (835)
Q Consensus 678 ~~-------------~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 744 (835)
.. ....++ ...+++|+.|++++| .+..++.+..+++|+.|+|++|... .++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~l~-~~~------------- 325 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNIS-DIS------------- 325 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSCCS-CCG-------------
T ss_pred hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCcCC-Cch-------------
Confidence 00 000011 123344444444444 3333333444444444444444221 111
Q ss_pred CCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCCCCCcccccceEEech
Q 003265 745 HISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSAKERKFVIRGR 808 (835)
Q Consensus 745 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~~ 808 (835)
.+..+++|+.|++++| .+..++ ....+++|+.|+++ +| +++.++.......++.+.+.++
T Consensus 326 ~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~-~n-~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAG-HN-QISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp GGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECC-SS-CCCBCGGGTTCTTCCEEECCCE
T ss_pred hhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCC-CC-ccCccchhhcCCCCCEEeccCC
Confidence 2446677777777775 444443 34567888888887 65 4444433222225666666553
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=7.6e-22 Score=225.39 Aligned_cols=357 Identities=15% Similarity=0.096 Sum_probs=215.4
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
+.+...+..+..+|.... .++++|++++|.+..++. ...+++|++|++++|....+++..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS--
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC--
Confidence 445566667777775333 799999999999988763 488999999999977655776667999999999999999
Q ss_pred CccccccCchHhhhhhcccEEeeccccccc--cchhhcCCCCCcEEecccccccCCcchHHhccCccc--ceeeecCcCc
Q 003265 503 SWSSFQLPVGMSELGSSLQLFDISLTLIKE--LPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRL--CVLRMFGTGW 578 (835)
Q Consensus 503 ~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~ 578 (835)
.+..+|.. .+. +|++|+|++|.++. +|..++++++|++|++++| .+.. . .+..+++| ++|++++|.+
T Consensus 80 --~l~~lp~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~-~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 --KLVKISCH--PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--S-SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp --CCCEEECC--CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--G-GGGGGTTSCEEEEEEEECTT
T ss_pred --ceeecCcc--ccC-CccEEeccCCccccccchhhhccCCcceEEEecCc-ccch--h-hccccccceeeEEEeecccc
Confidence 88889877 787 99999999999986 5789999999999999998 4554 2 27778888 9999998877
Q ss_pred --cCcccCCCcccc---------------------------------cCC--------cccchHhhcCCCCCCeEEEEec
Q 003265 579 --FNFHEAPEDSVL---------------------------------FGG--------GEVLVQELLGLKYLEVLELTLG 615 (835)
Q Consensus 579 --~~~~~~~~~~~~---------------------------------~~~--------~~~~~~~l~~L~~L~~L~l~~~ 615 (835)
.......-.... ... -...+..+..+++|+.|++..+
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc
Confidence 221110000000 000 0011223455555555555443
Q ss_pred chhh--HHHHhhcccccccceeeecCCCCCCCccc---------------------------------------------
Q 003265 616 SYHA--LQILLSSNRLKSCIRSLFLPLAGDATSII--------------------------------------------- 648 (835)
Q Consensus 616 ~~~~--l~~l~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------------------- 648 (835)
.... +..+.... ..++|+.|++++|......+
T Consensus 231 ~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 231 ETTWNSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEHHHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred ccCHHHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 3211 01110000 00122333222221100000
Q ss_pred ------ccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc----hhhccCCccE
Q 003265 649 ------DATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT----FLVFAPSLKS 718 (835)
Q Consensus 649 ------~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~----~l~~l~~L~~ 718 (835)
.......+++|++|++++|.... ..+..+ ..+++|+.|+|++| .+..++ .+..+++|++
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~---------~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENC---------GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCT-TTTTTC---------CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCE
T ss_pred CCCccccccchhhCCcccEEEeECCccCh-hhhhhh---------ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCE
Confidence 00001455667777776654322 112222 24666777777666 344332 2556666777
Q ss_pred EeeecCccchhhcccCcc--CCCcccc--------cCCCCC-CcccEeecCCCCccccccCCCCCCCCccEEEEecCCCc
Q 003265 719 LSLYGCNAMEEIISVGKF--DETPEVM--------GHISPF-GNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQ 787 (835)
Q Consensus 719 L~L~~~~~l~~~~~~~~~--~~~~~~~--------~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~ 787 (835)
|+|++|.....++..... ...+.+. .....+ ++|+.|+++++ +++.++.....+++|+.|+++ +| +
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~-~N-~ 455 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVA-SN-Q 455 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECC-SS-C
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECC-CC-c
Confidence 776665544324321000 0000000 001122 68899999886 577888767789999999998 65 8
Q ss_pred CCCCCCC-CCcc-cccceEEech
Q 003265 788 LRKLPLD-SNSA-KERKFVIRGR 808 (835)
Q Consensus 788 L~~lp~~-~~~~-~l~~~~i~~~ 808 (835)
++.+|.. +... .++.+.+.++
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCccCHHHhccCCcccEEECcCC
Confidence 8899986 4333 6788887764
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=2.1e-22 Score=240.27 Aligned_cols=130 Identities=22% Similarity=0.207 Sum_probs=67.1
Q ss_pred ccCCceEEEEeeeCCccc-cCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccc-ccCchHhhhhh
Q 003265 441 KRWENVRRLSLMQNQIET-LSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSF-QLPVGMSELGS 518 (835)
Q Consensus 441 ~~~~~~r~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~-~lp~~i~~l~~ 518 (835)
....+++.|++.+|.+.. ++....+++|++|++++|......+..|.++++|++|+|++| .+. .+|.. .+.
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n----~l~~~~~~~--~l~- 269 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN----QFVGPIPPL--PLK- 269 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSS----CCEESCCCC--CCT-
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCC----cccCccCcc--ccC-
Confidence 445567777777776654 333466677777777755543233333666677777777666 333 22221 343
Q ss_pred cccEEeecccccc-ccchhhcCC-CCCcEEecccccccCCcchHHhccCcccceeeecCcCc
Q 003265 519 SLQLFDISLTLIK-ELPEELKKL-VNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 519 ~L~~L~L~~~~i~-~Lp~~i~~L-~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
+|++|++++|.++ .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNF 330 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcc
Confidence 5555555555444 444444433 45555555554222233433 44555555555554443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=2.3e-21 Score=223.39 Aligned_cols=142 Identities=22% Similarity=0.263 Sum_probs=115.5
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
..+...+..+..+|... +.++++|++++|.+..++. ...+++|++|++++|....++++.|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS--
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC--
Confidence 45666777777777533 3789999999999988863 588999999999977655777777999999999999999
Q ss_pred CccccccCchHhhhhhcccEEeeccccccccc--hhhcCCCCCcEEecccccccCCcchHHhccCccc--ceeeecCcCc
Q 003265 503 SWSSFQLPVGMSELGSSLQLFDISLTLIKELP--EELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRL--CVLRMFGTGW 578 (835)
Q Consensus 503 ~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp--~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~ 578 (835)
.+..+|.. .+. +|++|+|++|.++.+| ..++++++|++|++++| .+...+ +..+++| ++|++++|.+
T Consensus 111 --~l~~lp~~--~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 --RLQNISCC--PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CCCEECSC--CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred --cCCccCcc--ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 88889877 787 9999999999998874 78999999999999998 555432 5555666 9999998876
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.7e-21 Score=227.04 Aligned_cols=147 Identities=20% Similarity=0.164 Sum_probs=117.7
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
..+...+.++..+|.. -+..+++|++++|.+..++. ..++++|++|++++|....+.+..|.++++|++|+|++|
T Consensus 15 ~~~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-- 91 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-- 91 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC--
T ss_pred ceEECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC--
Confidence 3455666677777753 24589999999999988753 488999999999977655676666899999999999999
Q ss_pred Ccccccc-CchHhhhhhcccEEeecccccccc-chhhcCCCCCcEEecccccccCCc--chHHhccCcccceeeecCcCc
Q 003265 503 SWSSFQL-PVGMSELGSSLQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKI--PRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 503 ~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~~ 578 (835)
.+..+ |..++.+. +|++|++++|.++.+ |..++++++|++|++++| .+..+ |. +..+++|++|++++|.+
T Consensus 92 --~l~~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 92 --PLIFMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp --CCSEECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSCC
T ss_pred --cccccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCcc
Confidence 77665 66788888 999999999999988 677889999999999998 56665 44 55689999999998876
Q ss_pred cC
Q 003265 579 FN 580 (835)
Q Consensus 579 ~~ 580 (835)
..
T Consensus 166 ~~ 167 (606)
T 3t6q_A 166 HY 167 (606)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5.9e-22 Score=229.52 Aligned_cols=301 Identities=14% Similarity=0.144 Sum_probs=226.6
Q ss_pred cCCceEEEEeeeCCccccCCC--CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-Hhhhhh
Q 003265 442 RWENVRRLSLMQNQIETLSEV--PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGS 518 (835)
Q Consensus 442 ~~~~~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~ 518 (835)
...+++.+++.++.+..++.. ..+++|++|++++|....+++..|.++++|++|+|++| .+..+|+. ++.+.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~- 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN----AIRYLPPHVFQNVP- 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCT-
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC----cCCCCCHHHHcCCC-
Confidence 456889999999988888764 67899999999977655777767999999999999999 78877665 57888
Q ss_pred cccEEeeccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccc
Q 003265 519 SLQLFDISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVL 597 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 597 (835)
+|++|+|++|.++.+|.. ++++++|++|++++| .+..+++..++++++|++|++++|.+...
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------- 186 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---------------- 186 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC----------------
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc----------------
Confidence 999999999999999877 489999999999999 67777765589999999999999887641
Q ss_pred hHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccc
Q 003265 598 VQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDY 677 (835)
Q Consensus 598 ~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 677 (835)
.+..+++|+.|+++.+....+ ..+.+|+.|+++++....... . ..++|+.|++++|.... +.+
T Consensus 187 --~~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~---~--~~~~L~~L~L~~n~l~~---~~~ 249 (597)
T 3oja_B 187 --DLSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG---P--VNVELTILKLQHNNLTD---TAW 249 (597)
T ss_dssp --CGGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEEC---S--CCSCCCEEECCSSCCCC---CGG
T ss_pred --ChhhhhhhhhhhcccCccccc-------cCCchhheeeccCCccccccc---c--cCCCCCEEECCCCCCCC---Chh
Confidence 255678888888887765432 234578888888876442222 1 13578889988775332 233
Q ss_pred hhcccccCCcccCCCccEEeEecCCCCCCC-c-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEe
Q 003265 678 AEIVRKRREPFVFRSLHLVAIYECHKLKDL-T-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTL 755 (835)
Q Consensus 678 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 755 (835)
+ ..+++|+.|+|++| .+..+ | .++.+++|+.|+|++|. +..++. ....+|+|+.|
T Consensus 250 l---------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L 306 (597)
T 3oja_B 250 L---------LNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVL 306 (597)
T ss_dssp G---------GGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCEEEC------------SSSCCTTCCEE
T ss_pred h---------ccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCCCCc------------ccccCCCCcEE
Confidence 3 25888999999988 45544 3 57788999999998864 444443 45678899999
Q ss_pred ecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCCCCCcccccceEEech
Q 003265 756 DLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSAKERKFVIRGR 808 (835)
Q Consensus 756 ~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~~ 808 (835)
+|++| .+..++.....+++|+.|+++ +| ++..+|..... .|+.+.+.++
T Consensus 307 ~Ls~N-~l~~i~~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~-~L~~L~l~~N 355 (597)
T 3oja_B 307 DLSHN-HLLHVERNQPQFDRLENLYLD-HN-SIVTLKLSTHH-TLKNLTLSHN 355 (597)
T ss_dssp ECCSS-CCCCCGGGHHHHTTCSEEECC-SS-CCCCCCCCTTC-CCSEEECCSS
T ss_pred ECCCC-CCCccCcccccCCCCCEEECC-CC-CCCCcChhhcC-CCCEEEeeCC
Confidence 99886 466777666678899999998 54 57777754332 5777777653
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6.3e-22 Score=229.29 Aligned_cols=284 Identities=14% Similarity=0.142 Sum_probs=229.4
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEeeccccccccch-hhcCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDISLTLIKELPE-ELKKL 540 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~Lp~-~i~~L 540 (835)
..+++++.|++++|....+|..+|.++++|++|+|++| .+..+|. .++.+. +|++|+|++|.++.+|. .++.+
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL----QIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS----CCCEECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC----CCCCCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCC
Confidence 45788999999966544899999999999999999999 8888765 788898 99999999999999865 46999
Q ss_pred CCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhH
Q 003265 541 VNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHAL 620 (835)
Q Consensus 541 ~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 620 (835)
++|++|+|++| .+..+|.+.++++++|++|++++|.+... .+..+..+++|+.|+++.+....+
T Consensus 123 ~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 123 PLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI---------------EDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCC---------------ChhhhhcCCcCcEEECcCCCCCCc
Confidence 99999999999 78899988679999999999999987642 233478899999999998876654
Q ss_pred HHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEec
Q 003265 621 QILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYE 700 (835)
Q Consensus 621 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 700 (835)
. ....++|+.|+++++... .+....+|+.|++++|.. ..+. . ..+++|+.|+|++
T Consensus 187 ~-----~~~l~~L~~L~l~~n~l~-------~l~~~~~L~~L~ls~n~l-~~~~-~-----------~~~~~L~~L~L~~ 241 (597)
T 3oja_B 187 D-----LSLIPSLFHANVSYNLLS-------TLAIPIAVEELDASHNSI-NVVR-G-----------PVNVELTILKLQH 241 (597)
T ss_dssp C-----GGGCTTCSEEECCSSCCS-------EEECCTTCSEEECCSSCC-CEEE-C-----------SCCSCCCEEECCS
T ss_pred C-----hhhhhhhhhhhcccCccc-------cccCCchhheeeccCCcc-cccc-c-----------ccCCCCCEEECCC
Confidence 2 223468999999887433 445567899999998753 2221 1 1357999999999
Q ss_pred CCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEE
Q 003265 701 CHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMA 780 (835)
Q Consensus 701 c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 780 (835)
| .+..++++..+++|+.|+|++|......+. .+..+++|+.|+|+++ .+..++.....+|+|+.|+
T Consensus 242 n-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~------------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 242 N-NLTDTAWLLNYPGLVEVDLSYNELEKIMYH------------PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp S-CCCCCGGGGGCTTCSEEECCSSCCCEEESG------------GGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEE
T ss_pred C-CCCCChhhccCCCCCEEECCCCccCCCCHH------------HhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEE
Confidence 9 678888899999999999999865444333 6778999999999995 6788887777899999999
Q ss_pred EecCCCcCCCCCCCCCcc-cccceEEech
Q 003265 781 VTHGCNQLRKLPLDSNSA-KERKFVIRGR 808 (835)
Q Consensus 781 i~~~C~~L~~lp~~~~~~-~l~~~~i~~~ 808 (835)
++ +| .++.+|...... .|+.+.+.++
T Consensus 308 Ls-~N-~l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 308 LS-HN-HLLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp CC-SS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred CC-CC-CCCccCcccccCCCCCEEECCCC
Confidence 98 55 788888765444 7888888764
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.3e-21 Score=227.94 Aligned_cols=265 Identities=18% Similarity=0.129 Sum_probs=122.1
Q ss_pred HhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccC
Q 003265 513 MSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFG 592 (835)
Q Consensus 513 i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 592 (835)
++.+. +|++|++++|.++.+|..+..+++|++|++++| .+..++...+.++++|++|++++|....
T Consensus 274 ~~~l~-~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~------------ 339 (606)
T 3t6q_A 274 FHCFS-GLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRL------------ 339 (606)
T ss_dssp TTTCT-TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCC------------
T ss_pred hcccc-CCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccc------------
Confidence 44454 666666666666666666666666666666666 4444433335666666666666654431
Q ss_pred CcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceeccccccccc
Q 003265 593 GGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEE 672 (835)
Q Consensus 593 ~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 672 (835)
......+..+++|+.|+++.+...............++|+.|++++|......+ ..+..+++|+.|++++|.....
T Consensus 340 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 340 --ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp --BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--TTTTTCTTCSEEECTTCCEECC
T ss_pred --ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--HHhcCCccCCeEECCCCcCCCc
Confidence 001112445566666666655443322111112223456666665554332222 2444555566666555432221
Q ss_pred ccccchhcccccCCcccCCCccEEeEecCCCCCCC-c-hhhccCCccEEeeecCccchhhccc-Ccc-------------
Q 003265 673 LKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDL-T-FLVFAPSLKSLSLYGCNAMEEIISV-GKF------------- 736 (835)
Q Consensus 673 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~-~~~------------- 736 (835)
.....+ ..+++|+.|++++|. +... + .+..+++|++|+|++|...+..+.. ...
T Consensus 416 ~~~~~~---------~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 416 DAQSPF---------QNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp TTCCTT---------TTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ccchhh---------hCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 111111 124444444444442 2221 1 2344444444444444322211100 000
Q ss_pred CCCcc-cccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCCCC-Ccc-cccceEEech
Q 003265 737 DETPE-VMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDS-NSA-KERKFVIRGR 808 (835)
Q Consensus 737 ~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~-~~~-~l~~~~i~~~ 808 (835)
..... .+..+..+++|+.|+|+++.-....+.....+++| .|+++ +| +++.+|... ... .++.+.+.++
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~-~N-~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA-SN-HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC-SS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc-CC-cccccCHhhcccCCCCCEEeCCCC
Confidence 00000 01245566777777777654333333344556666 77776 44 555554432 222 5666666653
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=6.4e-22 Score=236.06 Aligned_cols=83 Identities=25% Similarity=0.319 Sum_probs=48.6
Q ss_pred CceEEEEeeeCCccc-cCC-CCCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecCCCCcccc-ccCchHhhhhhc
Q 003265 444 ENVRRLSLMQNQIET-LSE-VPKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYCGQSWSSF-QLPVGMSELGSS 519 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~-~lp~~i~~l~~~ 519 (835)
.+++.|++.+|.+.. ++. ...+++|++|++++|... .+|...|.++++|++|+|++| .+. .+|..++.+.++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n----~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN----EFSGELPESLTNLSAS 369 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS----EEEECCCTTHHHHTTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC----ccCccccHHHHhhhcC
Confidence 466666666666553 222 256667777777755544 566555667777777777777 554 556666555334
Q ss_pred ccEEeeccccc
Q 003265 520 LQLFDISLTLI 530 (835)
Q Consensus 520 L~~L~L~~~~i 530 (835)
|++|++++|.+
T Consensus 370 L~~L~Ls~N~l 380 (768)
T 3rgz_A 370 LLTLDLSSNNF 380 (768)
T ss_dssp CSEEECCSSEE
T ss_pred CcEEEccCCCc
Confidence 55555554443
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=4e-22 Score=232.34 Aligned_cols=358 Identities=18% Similarity=0.136 Sum_probs=202.9
Q ss_pred EEEcCCCcccCCc--cccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 427 LVCAGAGLKEAPD--VKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 427 ~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
+...+..+..++. .....++++|++++|.+..++. +.++++|++|++++|....+++..|.++++|++|+|++|
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-- 114 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-- 114 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS--
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC--
Confidence 3444444444432 4456778888888887777643 367888888888866644665555788888888888888
Q ss_pred CccccccC-chHhhhhhcccEEeecccccc--ccchhhcCCCCCcEEecccccccCCcchHHhccCc-------------
Q 003265 503 SWSSFQLP-VGMSELGSSLQLFDISLTLIK--ELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYS------------- 566 (835)
Q Consensus 503 ~~~i~~lp-~~i~~l~~~L~~L~L~~~~i~--~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~------------- 566 (835)
.+..+| ..++.+. +|++|++++|.+. .+|..++++++|++|++++| .+..++...++.++
T Consensus 115 --~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 115 --KLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp --CCCCSSSSCCTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred --ccccccccccCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccC
Confidence 666665 5677777 8888888888776 36777888888888888777 44444332233333
Q ss_pred --------------ccceeeecCcCcc-----------------------------------------------------
Q 003265 567 --------------RLCVLRMFGTGWF----------------------------------------------------- 579 (835)
Q Consensus 567 --------------~L~~L~l~~~~~~----------------------------------------------------- 579 (835)
+|++|++++|...
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 3344444433221
Q ss_pred --------------------------------------------------CcccCCCcc----cccCCcccchHhhcCCC
Q 003265 580 --------------------------------------------------NFHEAPEDS----VLFGGGEVLVQELLGLK 605 (835)
Q Consensus 580 --------------------------------------------------~~~~~~~~~----~~~~~~~~~~~~l~~L~ 605 (835)
.+....... ............+..++
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred cccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence 000000000 00000000011344577
Q ss_pred CCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhc-----
Q 003265 606 YLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEI----- 680 (835)
Q Consensus 606 ~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~----- 680 (835)
+|+.|+++.+...............++|+.|++++|.... .+ ..+..+++|+.|++++|..........+..
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch--hhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 8899988877655432111111223577888887765332 22 356666777777777654332111111110
Q ss_pred ---------cc-ccCCcccCCCccEEeEecCCCCCC--Cc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCC
Q 003265 681 ---------VR-KRREPFVFRSLHLVAIYECHKLKD--LT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHIS 747 (835)
Q Consensus 681 ---------~~-~~~~~~~~~~L~~L~L~~c~~l~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 747 (835)
.. .+.....+++|+.|++++|. +.. ++ .+..+++|+.|+|++|...+..+ ..+.
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~ 494 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISW------------GVFD 494 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECT------------TTTT
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccCh------------hhhc
Confidence 00 01111234555555555552 222 22 34555555555555553322221 2567
Q ss_pred CCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCCCCCCcc--cccceEEech
Q 003265 748 PFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLPLDSNSA--KERKFVIRGR 808 (835)
Q Consensus 748 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp~~~~~~--~l~~~~i~~~ 808 (835)
.+++|+.|+++++.-....+.....+++|+.|+++ +| +++.+|...... .++.+.+.++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~-~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS-FN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT-TS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC-CC-cCcccCHhHhhhcccCcEEEccCC
Confidence 88999999999875433345566778999999998 65 688999875544 3777787764
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=3.8e-21 Score=231.83 Aligned_cols=149 Identities=18% Similarity=0.237 Sum_probs=125.9
Q ss_pred ccEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecC
Q 003265 424 RNFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYC 500 (835)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~ 500 (835)
...+...+.++..+|. .+.++++|++++|.+..+.. ...+++|++|++++|... .+++..|.++++|++|+|++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4566777778888887 67899999999999988643 489999999999988665 777777999999999999999
Q ss_pred CCCcccccc-CchHhhhhhcccEEeeccccccc-cchh--hcCCCCCcEEecccccccCCc-chHHhccCcccceeeecC
Q 003265 501 GQSWSSFQL-PVGMSELGSSLQLFDISLTLIKE-LPEE--LKKLVNLKCLNLRWAYRLNKI-PRQLISNYSRLCVLRMFG 575 (835)
Q Consensus 501 ~~~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~-Lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~~i~~L~~L~~L~l~~ 575 (835)
.+..+ |..++.+. +|++|+|++|.+.. +|.. ++++++|++|++++| .+..+ |...+++|++|++|++++
T Consensus 84 ----~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 84 ----KIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp ----CCCEECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEES
T ss_pred ----cCcccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCC
Confidence 77776 78899998 99999999999886 5655 899999999999999 55554 323389999999999999
Q ss_pred cCccC
Q 003265 576 TGWFN 580 (835)
Q Consensus 576 ~~~~~ 580 (835)
|.+..
T Consensus 158 N~i~~ 162 (844)
T 3j0a_A 158 NQIFL 162 (844)
T ss_dssp SCCCC
T ss_pred CcCCe
Confidence 88764
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1e-21 Score=210.35 Aligned_cols=294 Identities=16% Similarity=0.123 Sum_probs=211.3
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEE
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLF 523 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L 523 (835)
.++.+.+.++.+..+|... .++|++|++++|....+++..|.++++|++|+|++| .+..+ |..++.+. +|++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----KISKIHEKAFSPLR-KLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS----CCCEECGGGSTTCT-TCCEE
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC----ccCccCHhHhhCcC-CCCEE
Confidence 5778888888888877543 478999999977655777767999999999999999 77776 66788898 99999
Q ss_pred eeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 524 DISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 524 ~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
++++|.++.+|..+. ++|++|++++| .+..+|...+.++++|++|++++|.+...+ ..+..+..
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~~~ 171 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSG-------------FEPGAFDG 171 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGG-------------SCTTSSCS
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCC-------------CCcccccC
Confidence 999999999998776 89999999999 688888776899999999999998875311 12233555
Q ss_pred CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccc
Q 003265 604 LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRK 683 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 683 (835)
+ +|+.|+++.+....++.. ..++|+.|+++++......+ ..+..+++|+.|++++|. +..+.+..+.
T Consensus 172 l-~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~-l~~~~~~~~~---- 238 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKD-----LPETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQ-IRMIENGSLS---- 238 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSS-----SCSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSC-CCCCCTTGGG----
T ss_pred C-ccCEEECcCCCCCccCcc-----ccCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CCcCChhHhh----
Confidence 6 888888887776553321 22588899998876554432 367788899999998764 3333333333
Q ss_pred cCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCc
Q 003265 684 RREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPI 762 (835)
Q Consensus 684 ~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 762 (835)
.+++|+.|+|++| .+..+| .+..+++|++|++++|. ++.++....... .....+++|+.|.+.+++.
T Consensus 239 -----~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 239 -----FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-----GFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp -----GCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-----SCCSSSCCBSEEECCSSSS
T ss_pred -----CCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhHcccc-----ccccccccccceEeecCcc
Confidence 5889999999988 567776 48889999999999864 455443111100 0112367888999988763
Q ss_pred c--ccccCCCCCCCCccEEEEecCCC
Q 003265 763 L--KSIYWKPLPFTHLKEMAVTHGCN 786 (835)
Q Consensus 763 l--~~l~~~~~~~~~L~~L~i~~~C~ 786 (835)
. ...+.....+++|+.++++ +|.
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~-~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFG-NYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC-----
T ss_pred cccccCcccccccchhhhhhcc-ccc
Confidence 3 2222234456788888887 654
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4.3e-22 Score=231.98 Aligned_cols=235 Identities=13% Similarity=0.163 Sum_probs=154.2
Q ss_pred CCCCcceEEEeccCCccc------------------ccchhhc--CCCcceEEEeecCCCCccccccCchHhhhhhcccE
Q 003265 463 PKCPHLLTLFLDFNQELK------------------IADGFFQ--FMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQL 522 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~ 522 (835)
.++++|++|++++|.... +|.. +. ++++|++|+|++|. ....+|..++++. +|++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~-~L~~ 277 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCP---NLTKLPTFLKALP-EMQL 277 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCT---TCSSCCTTTTTCS-SCCE
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCc---CCccChHHHhcCC-CCCE
Confidence 567888888888666434 6665 55 78888888888883 3456788888887 8888
Q ss_pred Eeecccc-ccc--cchhhcCC------CCCcEEecccccccCCcch--HHhccCcccceeeecCcCccCcccCCCccccc
Q 003265 523 FDISLTL-IKE--LPEELKKL------VNLKCLNLRWAYRLNKIPR--QLISNYSRLCVLRMFGTGWFNFHEAPEDSVLF 591 (835)
Q Consensus 523 L~L~~~~-i~~--Lp~~i~~L------~~L~~L~L~~~~~l~~lp~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 591 (835)
|+|++|. ++. +|..++.+ ++|++|++++| .+..+|. . ++++++|++|++++|.+.+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~-l~~l~~L~~L~L~~N~l~g----------- 344 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETS-LQKMKKLGMLECLYNQLEG----------- 344 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHH-HTTCTTCCEEECCSCCCEE-----------
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhh-hccCCCCCEEeCcCCcCcc-----------
Confidence 8888887 774 78887776 88888888888 5668887 5 8888888888888877651
Q ss_pred CCcccchHhhcCCCCCCeEEEEecchhhHHHHhhccccccc-ceeeecCCCCCCCcccccccccc--cccccceeccccc
Q 003265 592 GGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSC-IRSLFLPLAGDATSIIDATAFAD--LNHLNELGIDRAE 668 (835)
Q Consensus 592 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~ 668 (835)
..+ .++.+++|+.|+++.+....++ ......++ |+.|+++++... .++ ..+.. +++|+.|++++|.
T Consensus 345 ----~ip-~~~~l~~L~~L~L~~N~l~~lp---~~l~~l~~~L~~L~Ls~N~l~-~lp--~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 345 ----KLP-AFGSEIKLASLNLAYNQITEIP---ANFCGFTEQVENLSFAHNKLK-YIP--NIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp ----ECC-CCEEEEEESEEECCSSEEEECC---TTSEEECTTCCEEECCSSCCS-SCC--SCCCTTCSSCEEEEECCSSC
T ss_pred ----chh-hhCCCCCCCEEECCCCcccccc---HhhhhhcccCcEEEccCCcCc-ccc--hhhhhcccCccCEEECcCCc
Confidence 122 5677788888888877665332 22333445 888888887655 444 23333 3478888888765
Q ss_pred ccccccccchhcccccCCcccCCCccEEeEecCCCCCCCch--hhccCCccEEeeecCccchhhc
Q 003265 669 ELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTF--LVFAPSLKSLSLYGCNAMEEII 731 (835)
Q Consensus 669 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~~~ 731 (835)
.... .+..+.. .......+++|+.|+|++| .+..+|. +..+++|++|+|++|... .++
T Consensus 414 l~~~-~p~~l~~--~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 414 IGSV-DGKNFDP--LDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp TTTT-TTCSSCT--TCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred CCCc-chhhhcc--cccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 4332 1221110 0000013457777777777 4556552 445777777777776433 444
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=221.78 Aligned_cols=123 Identities=18% Similarity=0.120 Sum_probs=108.0
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L 525 (835)
+.+++++|.+..+|.... ++|++|++++|....+++..|.++++|++|+|++| .+..+ |..++.+. +|++|+|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~-~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN----RIQYLDISVFKFNQ-ELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS----CCCEEEGGGGTTCT-TCCEEEC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC----ccCCcChHHhhccc-CCCEEec
Confidence 578999999998886533 89999999977655777777999999999999999 78777 67889998 9999999
Q ss_pred ccccccccchhhcCCCCCcEEecccccccCC--cchHHhccCcccceeeecCcCcc
Q 003265 526 SLTLIKELPEELKKLVNLKCLNLRWAYRLNK--IPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 526 ~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
++|.++.+|.. .+++|++|++++| .+.. +|.. ++++++|++|++++|.+.
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred CCCceeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccc
Confidence 99999999987 8999999999999 5665 5665 999999999999998876
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.3e-21 Score=231.74 Aligned_cols=319 Identities=12% Similarity=0.136 Sum_probs=227.5
Q ss_pred CCccc---cCCceEEEEeeeCCcc-ccCC-CCCCCcceEEEeccCCcc-c--ccchh------hcCCCcceEEEeecCCC
Q 003265 437 APDVK---RWENVRRLSLMQNQIE-TLSE-VPKCPHLLTLFLDFNQEL-K--IADGF------FQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 437 ~~~~~---~~~~~r~l~l~~~~~~-~l~~-~~~~~~L~~L~l~~~~~~-~--~~~~~------~~~l~~Lr~L~Ls~~~~ 502 (835)
+|... ...+++.|++.+|.+. .+|. ...+++|+.|++++|..+ . +|..+ +..+++|++|+|++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-- 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-- 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS--
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC--
Confidence 55433 6789999999998754 4554 378999999999987633 2 55431 234569999999999
Q ss_pred CccccccCc--hHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcc-cceeeecCcCcc
Q 003265 503 SWSSFQLPV--GMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSR-LCVLRMFGTGWF 579 (835)
Q Consensus 503 ~~~i~~lp~--~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~-L~~L~l~~~~~~ 579 (835)
.+..+|. .++.+. +|++|+|++|.++.+| .++.+++|++|++++| .+..+|.. +.++++ |++|++++|.+.
T Consensus 559 --~L~~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 559 --NLEEFPASASLQKMV-KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp --CCCBCCCHHHHTTCT-TCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCC
T ss_pred --cCCccCChhhhhcCC-CCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCC
Confidence 8889998 899998 9999999999999999 8999999999999999 67799987 899998 999999999876
Q ss_pred CcccCCCcc------c--ccCCc-----ccchHhhc--CCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCC
Q 003265 580 NFHEAPEDS------V--LFGGG-----EVLVQELL--GLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDA 644 (835)
Q Consensus 580 ~~~~~~~~~------~--~~~~~-----~~~~~~l~--~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 644 (835)
.+....... . ..... ......+. .+.+|+.|+++.|....++.... ..+++|+.|+|++|...
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~--~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF--ATGSPISTIILSNNLMT 710 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH--HTTCCCSEEECCSCCCS
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH--ccCCCCCEEECCCCcCC
Confidence 432111000 0 00000 00011122 23478888988887765543221 12468999999998655
Q ss_pred Cccccc-cc-----ccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc-hhhccCCcc
Q 003265 645 TSIIDA-TA-----FADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLK 717 (835)
Q Consensus 645 ~~~~~~-~~-----l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~ 717 (835)
.++.. .. +.++++|+.|+|++|.. ..++..... ..+++|+.|+|++| .+..+| .+..+++|+
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~--------~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~ 779 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRA--------TTLPYLSNMDVSYN-CFSSFPTQPLNSSQLK 779 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGST--------TTCTTCCEEECCSS-CCSSCCCGGGGCTTCC
T ss_pred -ccChHHhccccccccccCCccEEECCCCCC-ccchHHhhh--------ccCCCcCEEEeCCC-CCCccchhhhcCCCCC
Confidence 33311 01 22445999999998753 344332220 15899999999999 566676 688999999
Q ss_pred EEeeecCc------cchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCC
Q 003265 718 SLSLYGCN------AMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKL 791 (835)
Q Consensus 718 ~L~L~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~l 791 (835)
.|+|++|. ....++ ..+..+++|+.|+|++|. ++.+|... +++|+.|+++ +|+ +..+
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip------------~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs-~N~-l~~i 842 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWP------------TGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIA-DNP-NISI 842 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCC------------TTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEECC-SCT-TCEE
T ss_pred EEECCCCCCcccccccccCh------------HHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEECC-CCC-CCcc
Confidence 99998743 333333 367889999999999975 58888764 4899999999 775 5555
Q ss_pred CC
Q 003265 792 PL 793 (835)
Q Consensus 792 p~ 793 (835)
+.
T Consensus 843 ~~ 844 (876)
T 4ecn_A 843 DV 844 (876)
T ss_dssp EC
T ss_pred Ch
Confidence 43
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=4.4e-21 Score=205.17 Aligned_cols=293 Identities=16% Similarity=0.138 Sum_probs=211.2
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEE
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLF 523 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L 523 (835)
+++.+.+.++.+..+|.. -.++++.|++++|....++...|.++++|++|+|++| .+..+ |..++.+. +|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN----KISKISPGAFAPLV-KLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----CCCCBCTTTTTTCT-TCCEE
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----cCCeeCHHHhcCCC-CCCEE
Confidence 567788888888877653 2478999999977655777777999999999999999 78777 77888998 99999
Q ss_pred eeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 524 DISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 524 ~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
++++|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++++|.+... ......+..
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~ 169 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS-------------GIENGAFQG 169 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG-------------GBCTTGGGG
T ss_pred ECCCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc-------------CcChhhccC
Confidence 999999999998775 79999999999 68888877799999999999999877531 123445788
Q ss_pred CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccc
Q 003265 604 LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRK 683 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 683 (835)
+++|+.|+++.+....++.. ..++|+.|+++++......+ ..+..+++|+.|++++|. +..+.+..+.
T Consensus 170 l~~L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---- 237 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQG-----LPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNS-ISAVDNGSLA---- 237 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSS-----CCTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSC-CCEECTTTGG----
T ss_pred CCCcCEEECCCCccccCCcc-----ccccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CceeChhhcc----
Confidence 99999999988776543321 12678888888876543322 467778889999998765 3333333332
Q ss_pred cCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCc
Q 003265 684 RREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPI 762 (835)
Q Consensus 684 ~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 762 (835)
.+++|+.|+|++| .+..+| .+..+++|++|+|++|. ++.++....... .....+++|+.|++.+++-
T Consensus 238 -----~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 238 -----NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPP-----GYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp -----GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCS-----SCCTTSCCCSEEECCSSSS
T ss_pred -----CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhcCCc-----ccccccccccceEeecCcc
Confidence 4788999999888 566766 57788889999998864 455443111100 0122357888888888653
Q ss_pred ccccc---CCCCCCCCccEEEEecCC
Q 003265 763 LKSIY---WKPLPFTHLKEMAVTHGC 785 (835)
Q Consensus 763 l~~l~---~~~~~~~~L~~L~i~~~C 785 (835)
..+. .....+++|+.++++ ++
T Consensus 306 -~~~~i~~~~f~~~~~l~~l~L~-~N 329 (330)
T 1xku_A 306 -QYWEIQPSTFRCVYVRAAVQLG-NY 329 (330)
T ss_dssp -CGGGSCGGGGTTCCCGGGEEC----
T ss_pred -cccccCccccccccceeEEEec-cc
Confidence 3222 233345677777776 43
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=4.4e-21 Score=220.97 Aligned_cols=126 Identities=16% Similarity=0.211 Sum_probs=109.5
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEE
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLF 523 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L 523 (835)
..+.++++++.+..+|... .++|++|++++|....+++..|.++++|++|+|++| .+..+ |..++.+. +|++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~-~L~~L 105 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN----RIRSLDFHVFLFNQ-DLEYL 105 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC----CCCEECTTTTTTCT-TCCEE
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC----CCCcCCHHHhCCCC-CCCEE
Confidence 4478999999999887643 389999999977765888777999999999999999 88887 56688898 99999
Q ss_pred eeccccccccchhhcCCCCCcEEecccccccCCcc--hHHhccCcccceeeecCcCccC
Q 003265 524 DISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIP--RQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 524 ~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
+|++|.++.+|.. .+++|++|++++| .+..+| .. ++++++|++|++++|.+..
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCcccc
Confidence 9999999999988 8999999999999 677765 54 9999999999999988764
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.2e-21 Score=206.65 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=66.4
Q ss_pred CCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCc
Q 003265 465 CPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLK 544 (835)
Q Consensus 465 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~ 544 (835)
.++++.|++++|....+|.. +.++++|++|+|++| .+..+|..++.+. +|++|+|++|.++.+|..++++++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n----~l~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA----GLMELPDTMQQFA-GLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS----CCCCCCSCGGGGT-TCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC----CccchhHHHhccC-CCCEEECCCCccccCcHHHhcCcCCC
Confidence 35566666664443355555 444677777777777 6666676677776 77777777777777777777777777
Q ss_pred EEecccccccCCcchHHhcc---------CcccceeeecCcCc
Q 003265 545 CLNLRWAYRLNKIPRQLISN---------YSRLCVLRMFGTGW 578 (835)
Q Consensus 545 ~L~L~~~~~l~~lp~~~i~~---------L~~L~~L~l~~~~~ 578 (835)
+|++++|..+..+|.. +.. +++|++|++++|.+
T Consensus 154 ~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 154 ELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp EEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred EEECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCc
Confidence 7777776556666654 332 55555555554443
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=4e-21 Score=204.64 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=78.9
Q ss_pred CCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcc
Q 003265 488 FMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSR 567 (835)
Q Consensus 488 ~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~ 567 (835)
...+++.|+|++| .+..+|..++.+. +|++|+|++|.++.+|..++++++|++|++++| .+..+|.. ++++++
T Consensus 79 ~~~~l~~L~L~~n----~l~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELRSV----PLPQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNR 151 (328)
T ss_dssp TSTTCCEEEEESS----CCSSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTT
T ss_pred cccceeEEEccCC----CchhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcC
Confidence 4578999999999 8999999999998 999999999999999999999999999999999 67899987 999999
Q ss_pred cceeeecCcCcc
Q 003265 568 LCVLRMFGTGWF 579 (835)
Q Consensus 568 L~~L~l~~~~~~ 579 (835)
|++|++++|...
T Consensus 152 L~~L~L~~n~~~ 163 (328)
T 4fcg_A 152 LRELSIRACPEL 163 (328)
T ss_dssp CCEEEEEEETTC
T ss_pred CCEEECCCCCCc
Confidence 999999987654
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=3.4e-21 Score=214.56 Aligned_cols=298 Identities=15% Similarity=0.137 Sum_probs=149.3
Q ss_pred EEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccc
Q 003265 428 VCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSF 507 (835)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~ 507 (835)
...+..+..+|......++++|++++|.+..++ ...+++|++|++++|....++ +.++++|++|++++| .+.
T Consensus 48 ~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N----~l~ 119 (457)
T 3bz5_A 48 DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN----KLT 119 (457)
T ss_dssp ECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS----CCS
T ss_pred EccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC----cCC
Confidence 333333444444444445555555555554443 444555555555544322332 445555555555555 444
Q ss_pred ccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCc
Q 003265 508 QLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPED 587 (835)
Q Consensus 508 ~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 587 (835)
.+| ++.+. +|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++++|.+..
T Consensus 120 ~l~--~~~l~-~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~------- 184 (457)
T 3bz5_A 120 KLD--VSQNP-LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE------- 184 (457)
T ss_dssp CCC--CTTCT-TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-------
T ss_pred eec--CCCCC-cCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-------
Confidence 443 44444 5555555555555543 4455555555555554344442 4455555555555554432
Q ss_pred ccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccc
Q 003265 588 SVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRA 667 (835)
Q Consensus 588 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 667 (835)
+. +..+++|+.|+++.+....+. ....++|+.|++++|.... + .+..+++|+.|++++|
T Consensus 185 ----------l~-l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~-i----p~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 185 ----------LD-VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTE-I----DVTPLTQLTYFDCSVN 243 (457)
T ss_dssp ----------CC-CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC-C----CCTTCTTCSEEECCSS
T ss_pred ----------ec-cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccc-c----CccccCCCCEEEeeCC
Confidence 11 445566666666655544331 1223466666666654432 2 1445566666666655
Q ss_pred cccccccccchhcccccCCcccCCC----------ccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccC
Q 003265 668 EELEELKIDYAEIVRKRREPFVFRS----------LHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFD 737 (835)
Q Consensus 668 ~~l~~l~~~~~~~~~~~~~~~~~~~----------L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 737 (835)
.. ..+.+ ..+++ |+.|++++|..+..+| ++.+++|+.|++++|..++.++... .
T Consensus 244 ~l-~~~~~------------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--~ 307 (457)
T 3bz5_A 244 PL-TELDV------------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--A 307 (457)
T ss_dssp CC-SCCCC------------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--C
T ss_pred cC-CCcCH------------HHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--C
Confidence 32 22211 12333 3444444444333333 4566777777777777666655311 1
Q ss_pred CCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEecCCCcCCCCC
Q 003265 738 ETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVTHGCNQLRKLP 792 (835)
Q Consensus 738 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~~C~~L~~lp 792 (835)
....+ .+..+++|+.|+++++ +++.++ ...+++|+.|+++ + ++++.+|
T Consensus 308 ~L~~L--~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~-~-N~l~~l~ 355 (457)
T 3bz5_A 308 GITEL--DLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCV-N-AHIQDFS 355 (457)
T ss_dssp CCSCC--CCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECC-S-SCCCBCT
T ss_pred cceEe--chhhcccCCEEECCCC-cccccc--cccCCcCcEEECC-C-CCCCCcc
Confidence 11111 3455677777777763 455553 5567778888776 3 4555543
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=2.5e-20 Score=220.16 Aligned_cols=149 Identities=22% Similarity=0.225 Sum_probs=123.4
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
..+...+..+..+|... +.++++|++++|.+..++. ..++++|++|++++|....+++..|.++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS--
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC--
Confidence 45666666777777533 4789999999999988765 478999999999977655777777999999999999999
Q ss_pred CccccccCc-hHhhhhhcccEEeeccccccccc-hhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccC
Q 003265 503 SWSSFQLPV-GMSELGSSLQLFDISLTLIKELP-EELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 503 ~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
.+..+|. .++.+. +|++|+|++|.++.+| ..++++++|++|++++| .+..++.+.++++++|++|++++|.+..
T Consensus 84 --~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 84 --ELSQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp --CCCCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred --ccCccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccc
Confidence 8888887 488888 9999999999999886 57899999999999999 5666554448899999999999887654
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=1.2e-20 Score=211.59 Aligned_cols=322 Identities=14% Similarity=0.081 Sum_probs=216.3
Q ss_pred EEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccc-cc-CchHhhhhhcccEEee
Q 003265 448 RLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSF-QL-PVGMSELGSSLQLFDI 525 (835)
Q Consensus 448 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~-~l-p~~i~~l~~~L~~L~L 525 (835)
.+...++.+..+|. -.++|++|++++|....+++..|.++++|++|+|++| .+. .+ |..+..+. +|++|+|
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n----~~~~~i~~~~~~~l~-~L~~L~L 86 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ----TPGLVIRNNTFRGLS-SLIILKL 86 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC----STTCEECTTTTTTCT-TCCEEEC
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCC----cccceECcccccccc-cCCEEeC
Confidence 45566677777776 3489999999977655776666999999999999999 664 55 45688898 9999999
Q ss_pred cccccccc-chhhcCCCCCcEEecccccccCC-cc-hHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhc
Q 003265 526 SLTLIKEL-PEELKKLVNLKCLNLRWAYRLNK-IP-RQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELL 602 (835)
Q Consensus 526 ~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~-lp-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 602 (835)
++|.++.+ |..++++++|++|++++| .+.. +| ...+.++++|++|++++|.+.... ....+.
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------~~~~~~ 151 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ--------------PASFFL 151 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC--------------CCGGGG
T ss_pred CCCccCccChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccC--------------cccccC
Confidence 99999887 788999999999999999 5554 23 233789999999999999876411 111267
Q ss_pred CCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCccccc------ccccccccccceeccccccccccccc
Q 003265 603 GLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDA------TAFADLNHLNELGIDRAEELEELKID 676 (835)
Q Consensus 603 ~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~l~~~~~L~~L~l~~~~~l~~l~~~ 676 (835)
.+++|+.|+++.+............-...+++.|.++++......... ..+..+++|+.|++++|...... +.
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~ 230 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-AK 230 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-HH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc-hh
Confidence 889999999987765432110000000135666666665433221100 01223456666666655322111 00
Q ss_pred chhc---------------------------c---cccCCcccCCCccEEeEecCCCCCC-Cc-hhhccCCccEEeeecC
Q 003265 677 YAEI---------------------------V---RKRREPFVFRSLHLVAIYECHKLKD-LT-FLVFAPSLKSLSLYGC 724 (835)
Q Consensus 677 ~~~~---------------------------~---~~~~~~~~~~~L~~L~L~~c~~l~~-l~-~l~~l~~L~~L~L~~~ 724 (835)
.... . ........+++|+.|++++|. +.. ++ .+..+++|++|+|++|
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCC
Confidence 0000 0 000000124689999999994 444 33 5789999999999998
Q ss_pred ccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccc-cCCCCCCCCccEEEEecCCCcCCCC-CCCCCcc-ccc
Q 003265 725 NAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSI-YWKPLPFTHLKEMAVTHGCNQLRKL-PLDSNSA-KER 801 (835)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~~C~~L~~l-p~~~~~~-~l~ 801 (835)
......+. .+..+++|++|+|+++ .+..+ +.....+++|+.|+++ +| +++.+ |..+... .|+
T Consensus 310 ~l~~~~~~------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls-~N-~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 310 EINKIDDN------------AFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLS-YN-HIRALGDQSFLGLPNLK 374 (455)
T ss_dssp CCCEECTT------------TTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECC-SS-CCCEECTTTTTTCTTCC
T ss_pred cccccChh------------HhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECC-CC-cccccChhhcccccccc
Confidence 64433222 6778999999999996 45655 3445678999999998 65 67766 5455444 788
Q ss_pred ceEEech
Q 003265 802 KFVIRGR 808 (835)
Q Consensus 802 ~~~i~~~ 808 (835)
.+.+.++
T Consensus 375 ~L~L~~N 381 (455)
T 3v47_A 375 ELALDTN 381 (455)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 8888864
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.7e-20 Score=208.91 Aligned_cols=303 Identities=14% Similarity=0.109 Sum_probs=222.1
Q ss_pred cccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhc
Q 003265 440 VKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSS 519 (835)
Q Consensus 440 ~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~ 519 (835)
.....+++.+++++|.+..++....+++|++|++++|....++ +..+++|++|+|++| .+..+| ++.+. +
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N----~l~~~~--~~~l~-~ 107 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN----KLTNLD--VTPLT-K 107 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS----CCSCCC--CTTCT-T
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC----CCceee--cCCCC-c
Confidence 3456789999999999998887789999999999977644654 789999999999999 787775 88898 9
Q ss_pred ccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchH
Q 003265 520 LQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQ 599 (835)
Q Consensus 520 L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (835)
|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|++|++++|.... .+
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~----------------~~- 164 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT----------------KL- 164 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC----------------CC-
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc----------------cc-
Confidence 999999999999987 899999999999999 677775 7899999999999885432 11
Q ss_pred hhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchh
Q 003265 600 ELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAE 679 (835)
Q Consensus 600 ~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~ 679 (835)
.+..+++|+.|+++.+....++ ....++|+.|.++++..... .+..+++|+.|++++|.. ..++ .
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l-~~ip---~- 229 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKL-TEID---V- 229 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCC-SCCC---C-
T ss_pred ccccCCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcc-cccC---c-
Confidence 3677899999999988876653 23346899999998865432 467789999999998753 3332 2
Q ss_pred cccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCC
Q 003265 680 IVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSR 759 (835)
Q Consensus 680 ~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 759 (835)
..+++|+.|++++| .+..++ ++.+++|+.|+++++. ++.+.-... ...... ..+.+++|+.|++++
T Consensus 230 --------~~l~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n~-L~~L~l~~n-~~~~~~--~~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 230 --------TPLTQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQTD-LLEIDLTHN-TQLIYF--QAEGCRKIKELDVTH 295 (457)
T ss_dssp --------TTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTCC-CSCCCCTTC-TTCCEE--ECTTCTTCCCCCCTT
T ss_pred --------cccCCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCCC-CCEEECCCC-ccCCcc--cccccccCCEEECCC
Confidence 35899999999999 577665 5667777766665542 332211000 000011 245789999999999
Q ss_pred CCccccccCC--------CCCCCCccEEEEecCCCcCCCCCCCCCcccccceEEec
Q 003265 760 LPILKSIYWK--------PLPFTHLKEMAVTHGCNQLRKLPLDSNSAKERKFVIRG 807 (835)
Q Consensus 760 ~~~l~~l~~~--------~~~~~~L~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~ 807 (835)
|+.++.++.. ...+++|+.|+++ .++++.+|... ...|+.+.+.+
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~--~N~l~~l~l~~-l~~L~~L~l~~ 348 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLN--NTELTELDVSH-NTKLKSLSCVN 348 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECT--TCCCSCCCCTT-CTTCSEEECCS
T ss_pred CcccceeccCCCcceEechhhcccCCEEECC--CCccccccccc-CCcCcEEECCC
Confidence 9877777642 2345677777765 34566665322 12456555554
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=4.1e-20 Score=222.84 Aligned_cols=315 Identities=14% Similarity=0.159 Sum_probs=203.0
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L 525 (835)
+.++.+++++..+|. -.++|++|++++|....+++..|.++++|++|+|++|. .+..+ |..++.+. +|++|+|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~---~~~~i~~~~f~~L~-~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY---TPLTIDKEAFRNLP-NLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC---CCCEECTTTTSSCT-TCCEEEC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC---CccccCHHHhcCCC-CCCEEEC
Confidence 456667778888887 67899999999776556666669999999999999995 45566 67789998 9999999
Q ss_pred cccccccc-chhhcCCCCCcEEecccccccCC-cch-HHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhc
Q 003265 526 SLTLIKEL-PEELKKLVNLKCLNLRWAYRLNK-IPR-QLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELL 602 (835)
Q Consensus 526 ~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~-lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 602 (835)
++|.+..+ |..++++++|++|+|++| .+.. +|. ..++++++|++|++++|.+... .....++
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------~~~~~~~ 145 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------YLHPSFG 145 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------CCCGGGG
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccccc--------------ccchhHh
Confidence 99999988 889999999999999999 5554 443 3488999999999999987641 1224588
Q ss_pred CCCCCCeEEEEecchhhH-----HHHhhcccccccceeeecCCCCCCCcccccccccccc------cccceecccccccc
Q 003265 603 GLKYLEVLELTLGSYHAL-----QILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLN------HLNELGIDRAEELE 671 (835)
Q Consensus 603 ~L~~L~~L~l~~~~~~~l-----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~l~ 671 (835)
++++|+.|+++.+..... ..+. .++|+.|.++++......+ ..+..+. +|+.|++++|....
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~-----~~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQ-----GKTLSFFSLAANSLYSRVS--VDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHH-----HCSSCCCEECCSBSCCCCC--CCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred hCCCCCEEECCCCcCCeeCHHHccccc-----CCccceEECCCCccccccc--cchhhcCCccccCceeEEecCCCcCch
Confidence 999999999998765332 2111 1467777777665433222 1222222 26666666552111
Q ss_pred ccc---------------------------------------------------ccchhcccc-cCCcccCCCccEEeEe
Q 003265 672 ELK---------------------------------------------------IDYAEIVRK-RREPFVFRSLHLVAIY 699 (835)
Q Consensus 672 ~l~---------------------------------------------------~~~~~~~~~-~~~~~~~~~L~~L~L~ 699 (835)
... ......... +.....+++|+.|+|+
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 000 000000000 1111235566666666
Q ss_pred cCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCC-CCCCCCc
Q 003265 700 ECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWK-PLPFTHL 776 (835)
Q Consensus 700 ~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L 776 (835)
+| .+..++ .+..+++|++|+|++|.. ..+.. ..+..+++|+.|+++++ .+..++.. ...+++|
T Consensus 299 ~n-~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~-----------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 299 YN-KINKIADEAFYGLDNLQVLNLSYNLL-GELYS-----------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKL 364 (844)
T ss_dssp SC-CCCEECTTTTTTCSSCCEEEEESCCC-SCCCS-----------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCC
T ss_pred CC-cCCCCChHHhcCCCCCCEEECCCCCC-CccCH-----------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCC
Confidence 66 333332 355666666666666533 22211 25667778888888775 45555442 4457888
Q ss_pred cEEEEecCCCcCCCCCCCCCcccccceEEech
Q 003265 777 KEMAVTHGCNQLRKLPLDSNSAKERKFVIRGR 808 (835)
Q Consensus 777 ~~L~i~~~C~~L~~lp~~~~~~~l~~~~i~~~ 808 (835)
+.|+++ +| .++.+|. ...++.+.+.++
T Consensus 365 ~~L~Ls-~N-~l~~i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 365 QTLDLR-DN-ALTTIHF---IPSIPDIFLSGN 391 (844)
T ss_dssp CEEEEE-TC-CSCCCSS---CCSCSEEEEESC
T ss_pred CEEECC-CC-CCCcccC---CCCcchhccCCC
Confidence 888887 44 6666654 224555666543
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=7.3e-20 Score=216.21 Aligned_cols=245 Identities=16% Similarity=0.137 Sum_probs=170.2
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L 525 (835)
+.++.+++.+..+|... .+++++|++++|....++...|.++++|++|+|++| .+..+ |..++.+. +|++|+|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~-~L~~L~L 80 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN----TISKLEPELCQKLP-MLKVLNL 80 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS----CCCCCCTTHHHHCT-TCCEEEC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC----ccCccCHHHHhccc-CcCEEEC
Confidence 35677777888777542 379999999977655888878999999999999999 77776 66688998 9999999
Q ss_pred ccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCC
Q 003265 526 SLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGL 604 (835)
Q Consensus 526 ~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 604 (835)
++|.++.+|. .++++++|++|++++| .+..+|...++++++|++|++++|.+... .+..+..+
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~~~l 144 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSST---------------KLGTQVQL 144 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCC---------------CCCSSSCC
T ss_pred CCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccccc---------------Cchhhccc
Confidence 9999999987 5999999999999999 67888765599999999999999987642 12336778
Q ss_pred CCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCccccccccccccc--------------------------
Q 003265 605 KYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNH-------------------------- 658 (835)
Q Consensus 605 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~-------------------------- 658 (835)
++|+.|+++.+....+..........++|+.|+++++......+ ..+..+.+
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP--GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT--TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh--hhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 99999999887654432211111113578889988875443332 23333444
Q ss_pred -ccceecccccccccccccchhcccccCCcccC--CCccEEeEecCCCCCCCc--hhhccCCccEEeeecCcc
Q 003265 659 -LNELGIDRAEELEELKIDYAEIVRKRREPFVF--RSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNA 726 (835)
Q Consensus 659 -L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~ 726 (835)
|+.|++++|.. ..+.+.++. .+ ++|+.|+|++| .+..++ .+..+++|++|++++|..
T Consensus 223 ~L~~L~L~~n~l-~~~~~~~~~---------~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 223 SIRNLSLSNSQL-STTSNTTFL---------GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCEEECTTSCC-CEECTTTTG---------GGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccEEEccCCcc-cccChhHhh---------ccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCcc
Confidence 44444443321 111111111 22 34777777777 344432 366677777777776643
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=215.11 Aligned_cols=343 Identities=18% Similarity=0.131 Sum_probs=199.0
Q ss_pred EEEcCCCcccCC--ccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 427 LVCAGAGLKEAP--DVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
+...+..+..++ ......++++|++++|.+..++. ..++++|++|++++|....+++..|.++++|++|++++|
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-- 110 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-- 110 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS--
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc--
Confidence 333444444333 33456788888888888777654 367888888888866654666666888888888888888
Q ss_pred CccccccCc-hHhhhhhcccEEeeccccccc--cchhhcCCCCCcEEecccccccCCcchHHhccCccc----ceeeecC
Q 003265 503 SWSSFQLPV-GMSELGSSLQLFDISLTLIKE--LPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRL----CVLRMFG 575 (835)
Q Consensus 503 ~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L----~~L~l~~ 575 (835)
.+..+|. .++.+. +|++|++++|.++. +|..++++++|++|++++| .+..++...++.+++| ++|++++
T Consensus 111 --~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 111 --NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp --CCCCSTTCSCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred --ccccCCCccccccc-cccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCC
Confidence 7777665 577777 88888888887775 5778888888888888877 4554443224444444 3344333
Q ss_pred cCcc----------------------------------------------------------------------------
Q 003265 576 TGWF---------------------------------------------------------------------------- 579 (835)
Q Consensus 576 ~~~~---------------------------------------------------------------------------- 579 (835)
|.+.
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 3221
Q ss_pred -----------------------------CcccCCCc-c-------------ccc------------CCcccchHhhcCC
Q 003265 580 -----------------------------NFHEAPED-S-------------VLF------------GGGEVLVQELLGL 604 (835)
Q Consensus 580 -----------------------------~~~~~~~~-~-------------~~~------------~~~~~~~~~l~~L 604 (835)
........ . ... ............+
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 10000000 0 000 0000000001467
Q ss_pred CCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccch------
Q 003265 605 KYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYA------ 678 (835)
Q Consensus 605 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~------ 678 (835)
++|+.|+++.+...............++|+.|++++|......+ .+..+++|+.|++++|...........
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE---EEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc---cccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 77788877766544321000111112456666666554322221 244444555555544321110000000
Q ss_pred --------hccc-ccCCcccCCCccEEeEecCCCC-CCCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCC
Q 003265 679 --------EIVR-KRREPFVFRSLHLVAIYECHKL-KDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHIS 747 (835)
Q Consensus 679 --------~~~~-~~~~~~~~~~L~~L~L~~c~~l-~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~ 747 (835)
.... .+.....+++|+.|+|++|... ..+| .+..+++|++|+|++|......+. .+.
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~ 491 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT------------AFN 491 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT------------TTT
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh------------hhh
Confidence 0000 1112245899999999999532 2344 588999999999999865433333 677
Q ss_pred CCCcccEeecCCCCccccccC-CCCCCCCccEEEEecCCCcCCCCC
Q 003265 748 PFGNLQTLDLSRLPILKSIYW-KPLPFTHLKEMAVTHGCNQLRKLP 792 (835)
Q Consensus 748 ~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~i~~~C~~L~~lp 792 (835)
.+++|++|+|+++ .+..++. ....+++|+.|+++ +++--...|
T Consensus 492 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~-~N~~~~~~~ 535 (570)
T 2z63_A 492 SLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH-TNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC-SSCBCCCTT
T ss_pred cccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEec-CCcccCCCc
Confidence 8999999999996 5666654 35678999999999 775443333
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.9e-20 Score=198.26 Aligned_cols=246 Identities=13% Similarity=0.092 Sum_probs=113.0
Q ss_pred cceEEEeccCCccc---ccchhhcCCCcceEEEeec-CCCCcccc-ccCchHhhhhhcccEEeecccccc-ccchhhcCC
Q 003265 467 HLLTLFLDFNQELK---IADGFFQFMPSLKVLKMSY-CGQSWSSF-QLPVGMSELGSSLQLFDISLTLIK-ELPEELKKL 540 (835)
Q Consensus 467 ~L~~L~l~~~~~~~---~~~~~~~~l~~Lr~L~Ls~-~~~~~~i~-~lp~~i~~l~~~L~~L~L~~~~i~-~Lp~~i~~L 540 (835)
+++.|++++|.... +|. .|.++++|++|+|++ | .+. .+|..++.+. +|++|+|++|.++ .+|..+.++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n----~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGIN----NLVGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEET----TEESCCCGGGGGCT-TCSEEEEEEECCEEECCGGGGGC
T ss_pred eEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCC----cccccCChhHhcCC-CCCEEECcCCeeCCcCCHHHhCC
Confidence 45555555443221 222 255555555555553 4 332 4555555555 5555555555555 445555555
Q ss_pred CCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCC-CCCeEEEEecchhh
Q 003265 541 VNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLK-YLEVLELTLGSYHA 619 (835)
Q Consensus 541 ~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~ 619 (835)
++|++|++++|.....+|.. +..+++|++|++++|.+.. ..+..+..++ +|+.|+++.+....
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~---------------~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG---------------AIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp TTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE---------------ECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC---------------cCCHHHhhhhhcCcEEECcCCeeec
Confidence 55555555555222244444 5555555555555554431 1223344444 45555544333220
Q ss_pred -HHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeE
Q 003265 620 -LQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAI 698 (835)
Q Consensus 620 -l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L 698 (835)
++..+. .. .|+.|+++++......+ ..+..+++|+.|++++|..... .+. . ..+++|+.|+|
T Consensus 189 ~~~~~~~---~l-~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~-~~~-~---------~~l~~L~~L~L 251 (313)
T 1ogq_A 189 KIPPTFA---NL-NLAFVDLSRNMLEGDAS--VLFGSDKNTQKIHLAKNSLAFD-LGK-V---------GLSKNLNGLDL 251 (313)
T ss_dssp ECCGGGG---GC-CCSEEECCSSEEEECCG--GGCCTTSCCSEEECCSSEECCB-GGG-C---------CCCTTCCEEEC
T ss_pred cCChHHh---CC-cccEEECcCCcccCcCC--HHHhcCCCCCEEECCCCceeee-cCc-c---------cccCCCCEEEC
Confidence 000000 00 13333333332221111 2444555666666665443221 111 1 23556666666
Q ss_pred ecCCCCCCCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccc
Q 003265 699 YECHKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILK 764 (835)
Q Consensus 699 ~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 764 (835)
++|.....+| .+..+++|++|+|++|...+.+|. ...+++|+.|++.+++.+.
T Consensus 252 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-------------STTGGGSCGGGTCSSSEEE
T ss_pred cCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-------------CccccccChHHhcCCCCcc
Confidence 6663221333 355566666666666544434332 2445566666665555443
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.4e-20 Score=195.38 Aligned_cols=247 Identities=14% Similarity=0.127 Sum_probs=196.8
Q ss_pred CceEEEEeeeCCccc---cCC-CCCCCcceEEEecc-CCcc-cccchhhcCCCcceEEEeecCCCCcccc-ccCchHhhh
Q 003265 444 ENVRRLSLMQNQIET---LSE-VPKCPHLLTLFLDF-NQEL-KIADGFFQFMPSLKVLKMSYCGQSWSSF-QLPVGMSEL 516 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~---l~~-~~~~~~L~~L~l~~-~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~-~lp~~i~~l 516 (835)
.+++.|++.++.+.. ++. ...+++|++|++++ |... .+|.. |.++++|++|+|++| .+. .+|..++.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n----~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT----NVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE----CCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC----eeCCcCCHHHhCC
Confidence 589999999999874 444 48899999999996 5544 55555 899999999999999 776 789999999
Q ss_pred hhcccEEeecccccc-ccchhhcCCCCCcEEecccccccC-CcchHHhccCc-ccceeeecCcCccCcccCCCcccccCC
Q 003265 517 GSSLQLFDISLTLIK-ELPEELKKLVNLKCLNLRWAYRLN-KIPRQLISNYS-RLCVLRMFGTGWFNFHEAPEDSVLFGG 593 (835)
Q Consensus 517 ~~~L~~L~L~~~~i~-~Lp~~i~~L~~L~~L~L~~~~~l~-~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~ 593 (835)
. +|++|+|++|.+. .+|..+..+++|++|++++| .+. .+|.. +..++ +|++|++++|.+..
T Consensus 125 ~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~------------- 188 (313)
T 1ogq_A 125 K-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTG------------- 188 (313)
T ss_dssp T-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEE-------------
T ss_pred C-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeec-------------
Confidence 8 9999999999998 78999999999999999999 455 78887 88998 99999999988752
Q ss_pred cccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccc
Q 003265 594 GEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEEL 673 (835)
Q Consensus 594 ~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 673 (835)
..+..+..++ |+.|+++.+..... ........++|+.|+++++......+ .+..+++|++|++++|.....
T Consensus 189 --~~~~~~~~l~-L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~l~~L~~L~Ls~N~l~~~- 259 (313)
T 1ogq_A 189 --KIPPTFANLN-LAFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRIYGT- 259 (313)
T ss_dssp --ECCGGGGGCC-CSEEECCSSEEEEC--CGGGCCTTSCCSEEECCSSEECCBGG---GCCCCTTCCEEECCSSCCEEC-
T ss_pred --cCChHHhCCc-ccEEECcCCcccCc--CCHHHhcCCCCCEEECCCCceeeecC---cccccCCCCEEECcCCcccCc-
Confidence 2344566676 99999998876532 12223345789999999987655555 467789999999998765432
Q ss_pred cccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchh
Q 003265 674 KIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEE 729 (835)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~ 729 (835)
.+.++. .+++|+.|+|++|.....+|....+++|+.|++++|+.+..
T Consensus 260 ~p~~l~---------~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 260 LPQGLT---------QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCGGGG---------GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CChHHh---------cCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 344443 58999999999995444677778899999999999875543
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=5.3e-20 Score=211.71 Aligned_cols=186 Identities=20% Similarity=0.189 Sum_probs=127.4
Q ss_pred EEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-chHhhhhhcccEEeecc
Q 003265 449 LSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELGSSLQLFDISL 527 (835)
Q Consensus 449 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~~~L~~L~L~~ 527 (835)
.+..++.+..+|... .++|++|++++|....+++..|.++++|++|+|++| .+..++ ..++.+. +|++|+|++
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~-~L~~L~Ls~ 83 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS----RINTIEGDAFYSLG-SLEHLDLSD 83 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS----CCCEECTTTTTTCT-TCCEEECTT
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCC----CcCccChhhccccc-cCCEEECCC
Confidence 455567777777642 489999999987755676666999999999999999 787776 5788998 999999999
Q ss_pred ccccccchh-hcCCCCCcEEecccccccCC--cchHHhccCcccceeeecCcCcc-CcccCCCcc-------c--ccCCc
Q 003265 528 TLIKELPEE-LKKLVNLKCLNLRWAYRLNK--IPRQLISNYSRLCVLRMFGTGWF-NFHEAPEDS-------V--LFGGG 594 (835)
Q Consensus 528 ~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~-~~~~~~~~~-------~--~~~~~ 594 (835)
|.++.+|.. ++++++|++|++++| .+.. +|.. ++++++|++|++++|... ......-.. . ...-.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CccCccCHHHhccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 999999765 999999999999999 5664 4554 899999999999998733 211000000 0 00001
Q ss_pred ccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCC
Q 003265 595 EVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDA 644 (835)
Q Consensus 595 ~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 644 (835)
...+..++.+++|+.|++..+....+..... ...++|+.|+++++...
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFA--DILSSVRYLELRDTNLA 209 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHH--HSTTTBSEEEEESCBCT
T ss_pred ccChhhhhccccCceEecccCcccccchhhH--hhcccccEEEccCCccc
Confidence 1123344455555555555554433333221 12357778888776543
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=1.5e-19 Score=193.49 Aligned_cols=284 Identities=14% Similarity=0.135 Sum_probs=205.6
Q ss_pred cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-chHhhhhhcccEEeecccccccc-chhhcCCCCCc
Q 003265 467 HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELGSSLQLFDISLTLIKEL-PEELKKLVNLK 544 (835)
Q Consensus 467 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~ 544 (835)
+++.++++++....+|..+ .++|++|+|++| .+..++ ..+..+. +|++|+|++|.++.+ |..++++++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n----~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNN----DISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSS----CCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCC----cCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCC
Confidence 7899999966544777654 368999999999 888875 4788998 999999999999988 77899999999
Q ss_pred EEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHh
Q 003265 545 CLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILL 624 (835)
Q Consensus 545 ~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~ 624 (835)
+|++++| .+..+|.. +. ++|++|++++|.+... ....+..+++|+.|+++.+.........
T Consensus 106 ~L~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 106 KLYISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKV---------------PKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp EEECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCC---------------CSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred EEECCCC-cCCccCcc-cc--ccCCEEECCCCccCcc---------------CHhHhCCCccCCEEECCCCccccCCCCc
Confidence 9999999 78899986 43 8999999999987642 1233778999999999988765432222
Q ss_pred hcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCC
Q 003265 625 SSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKL 704 (835)
Q Consensus 625 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 704 (835)
...... +|+.|+++++.... ++ ..+ .++|+.|++++|.. ..+.+..+ ..+++|+.|+|++| .+
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-l~--~~~--~~~L~~L~l~~n~i-~~~~~~~l---------~~l~~L~~L~L~~N-~l 229 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-IP--KDL--PETLNELHLDHNKI-QAIELEDL---------LRYSKLYRLGLGHN-QI 229 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-CC--SSS--CSSCSCCBCCSSCC-CCCCTTSS---------TTCTTCSCCBCCSS-CC
T ss_pred ccccCC-ccCEEECcCCCCCc-cC--ccc--cCCCCEEECCCCcC-CccCHHHh---------cCCCCCCEEECCCC-cC
Confidence 222222 78899998876543 22 122 26899999987653 33333333 25889999999998 56
Q ss_pred CCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCC-------CCCC
Q 003265 705 KDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPL-------PFTH 775 (835)
Q Consensus 705 ~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~ 775 (835)
..++ .+..+++|+.|+|++|. +..++. .+..+++|+.|+++++ .++.++.... .+++
T Consensus 230 ~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 230 RMIENGSLSFLPTLRELHLDNNK-LSRVPA------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSC-CCBCCT------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCC
T ss_pred CcCChhHhhCCCCCCEEECCCCc-CeecCh------------hhhcCccCCEEECCCC-CCCccChhHcccccccccccc
Confidence 6655 48899999999999874 445554 5678899999999985 5676654321 2578
Q ss_pred ccEEEEecCCCcC--CCCCCCCCcc-cccceEEechh
Q 003265 776 LKEMAVTHGCNQL--RKLPLDSNSA-KERKFVIRGRE 809 (835)
Q Consensus 776 L~~L~i~~~C~~L--~~lp~~~~~~-~l~~~~i~~~~ 809 (835)
|+.|++. ++|-. ...|..+... .++.+.+.+++
T Consensus 296 l~~L~l~-~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLF-NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECC-SSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEee-cCcccccccCcccccccchhhhhhccccc
Confidence 9999998 77643 2233333333 67777776653
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=4.5e-19 Score=189.54 Aligned_cols=262 Identities=16% Similarity=0.160 Sum_probs=171.4
Q ss_pred cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEeecccccccc-chhhcCCCCCc
Q 003265 467 HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDISLTLIKEL-PEELKKLVNLK 544 (835)
Q Consensus 467 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~ 544 (835)
+++.++++++....+|..+ .+.|++|+|++| .+..+|. .++.+. +|++|+|++|.++.+ |..+..+++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n----~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNN----KITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSS----CCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCC----cCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 7899999866544777653 368999999999 8888876 688888 999999999999988 88899999999
Q ss_pred EEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHh
Q 003265 545 CLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILL 624 (835)
Q Consensus 545 ~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~ 624 (835)
+|++++| .+..+|.. +. ++|++|++++|.+.. .....+..+++|+.|+++.+.........
T Consensus 104 ~L~Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 104 RLYLSKN-QLKELPEK-MP--KTLQELRVHENEITK---------------VRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp EEECCSS-CCSBCCSS-CC--TTCCEEECCSSCCCB---------------BCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred EEECCCC-cCCccChh-hc--ccccEEECCCCcccc---------------cCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 9999999 68888875 33 799999999887763 23445788899999998877654322212
Q ss_pred hcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCC
Q 003265 625 SSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKL 704 (835)
Q Consensus 625 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 704 (835)
......++|+.|.++++.... ++ ..+ .++|+.|++++|. +..+.+..+. .+++|+.|+|++| .+
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~-l~--~~~--~~~L~~L~l~~n~-l~~~~~~~~~---------~l~~L~~L~Ls~n-~l 228 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITT-IP--QGL--PPSLTELHLDGNK-ITKVDAASLK---------GLNNLAKLGLSFN-SI 228 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCS-CC--SSC--CTTCSEEECTTSC-CCEECTGGGT---------TCTTCCEEECCSS-CC
T ss_pred hhccCCCCcCEEECCCCcccc-CC--ccc--cccCCEEECCCCc-CCccCHHHhc---------CCCCCCEEECCCC-cC
Confidence 222234566777776654332 21 111 1566777776654 2322233332 3666777777766 34
Q ss_pred CCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCC-------CCCC
Q 003265 705 KDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPL-------PFTH 775 (835)
Q Consensus 705 ~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-------~~~~ 775 (835)
..++ .+..+++|++|+|++|. +..++. .+..+++|++|+++++ .++.++.... ..+.
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNK-LVKVPG------------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSC-CSSCCT------------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCC
T ss_pred ceeChhhccCCCCCCEEECCCCc-CccCCh------------hhccCCCcCEEECCCC-cCCccChhhcCCccccccccc
Confidence 4433 35666777777776653 334433 4556667777777664 3555443221 2356
Q ss_pred ccEEEEecCCC
Q 003265 776 LKEMAVTHGCN 786 (835)
Q Consensus 776 L~~L~i~~~C~ 786 (835)
|+.|++. ++|
T Consensus 295 l~~l~l~-~N~ 304 (330)
T 1xku_A 295 YSGVSLF-SNP 304 (330)
T ss_dssp CSEEECC-SSS
T ss_pred ccceEee-cCc
Confidence 6666666 443
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=3.6e-19 Score=208.73 Aligned_cols=147 Identities=24% Similarity=0.254 Sum_probs=124.2
Q ss_pred EEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCC
Q 003265 426 FLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQS 503 (835)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~ 503 (835)
.+...+.++..+|.. -+.++++|++++|.+..++. +.++++|++|+|++|....++++.|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N--- 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--- 110 (635)
T ss_dssp EEECTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC---
T ss_pred EEECCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC---
Confidence 344556677777753 24689999999999999875 489999999999977655888888999999999999999
Q ss_pred ccccccCch-HhhhhhcccEEeeccccccccch-hhcCCCCCcEEecccccccCC--cchHHhccCcccceeeecCcCcc
Q 003265 504 WSSFQLPVG-MSELGSSLQLFDISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNK--IPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 504 ~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
.+..+|.. +..+. +|++|+|++|+++.+|. .++++++|++|++++| .+.. +|.. ++.+++|++|++++|.+.
T Consensus 111 -~l~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 111 -PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp -CCCEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred -cCCCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcccc
Confidence 89998865 67888 99999999999999976 4899999999999999 5654 4564 899999999999998765
Q ss_pred C
Q 003265 580 N 580 (835)
Q Consensus 580 ~ 580 (835)
.
T Consensus 187 ~ 187 (635)
T 4g8a_A 187 S 187 (635)
T ss_dssp E
T ss_pred c
Confidence 4
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=191.38 Aligned_cols=129 Identities=26% Similarity=0.308 Sum_probs=64.1
Q ss_pred ceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-Hhhhhhccc
Q 003265 445 NVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQ 521 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~ 521 (835)
++++|++++|.+..++. ...+++|++|++++|....+++..|.++++|++|+|++| .+..+|.. ++.+. +|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~~~~~~l~-~L~ 127 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN----YLSNLSSSWFKPLS-SLT 127 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS----CCSSCCHHHHTTCT-TCS
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC----cCCcCCHhHhCCCc-cCC
Confidence 45555555555554433 245555555555544322444434555555555555555 44455444 34444 555
Q ss_pred EEeeccccccccch--hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCc
Q 003265 522 LFDISLTLIKELPE--ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
+|++++|.++.+|. .+..+++|++|++++|..+..++...+.++++|++|++++|.+
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 55555555555544 4455555555555555334444333345555555555555444
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=4.3e-19 Score=187.56 Aligned_cols=242 Identities=18% Similarity=0.194 Sum_probs=156.0
Q ss_pred EEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc---CchHhhhhhcccEEe
Q 003265 448 RLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL---PVGMSELGSSLQLFD 524 (835)
Q Consensus 448 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l---p~~i~~l~~~L~~L~ 524 (835)
.+...++.+..+|.. -.++|++|++++|....++..+|.++++|++|+|++| .+..+ |..+..+. +|++|+
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~~~~~-~L~~L~ 84 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN----GLSFKGCCSQSDFGTT-SLKYLD 84 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS----CCCEEEEEEHHHHSCS-CCCEEE
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC----ccCcccCccccccccc-ccCEEE
Confidence 455566666666653 2368889999866655788877888999999999998 66544 66777777 999999
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcch-HHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPR-QLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
|++|.+..+|..+..+++|++|++++| .+..++. ..+..+++|++|++++|.+... ....+..
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~ 148 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA---------------FNGIFNG 148 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC---------------STTTTTT
T ss_pred CCCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc---------------chhhccc
Confidence 999988888888888999999999988 5666664 3478888999999988766521 1223555
Q ss_pred CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccc
Q 003265 604 LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRK 683 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 683 (835)
+++|+.|+++.+.... ...+ ..+..+++|+.|++++|. +..+.+..+.
T Consensus 149 l~~L~~L~l~~n~l~~-------------------------~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---- 196 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQE-------------------------NFLP--DIFTELRNLTFLDLSQCQ-LEQLSPTAFN---- 196 (306)
T ss_dssp CTTCCEEECTTCEEGG-------------------------GEEC--SCCTTCTTCCEEECTTSC-CCEECTTTTT----
T ss_pred CcCCCEEECCCCcccc-------------------------ccch--hHHhhCcCCCEEECCCCC-cCCcCHHHhc----
Confidence 6666666665443221 0011 244556667777776653 2222233332
Q ss_pred cCCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCC-cccEeecCCC
Q 003265 684 RREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFG-NLQTLDLSRL 760 (835)
Q Consensus 684 ~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 760 (835)
.+++|+.|+|++| .+..++ .+..+++|++|+|++|......+. .+..+| +|++|+|+++
T Consensus 197 -----~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 197 -----SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ------------ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp -----TCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS------------SCCCCCTTCCEEECTTC
T ss_pred -----CCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH------------HHHhhhccCCEEEccCC
Confidence 3666777777766 344443 355667777777776644332222 344453 6666666664
Q ss_pred C
Q 003265 761 P 761 (835)
Q Consensus 761 ~ 761 (835)
+
T Consensus 259 ~ 259 (306)
T 2z66_A 259 D 259 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.9e-18 Score=197.93 Aligned_cols=253 Identities=21% Similarity=0.220 Sum_probs=133.2
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
..+...+..+..+|.... .+++.|++.+|.+..++. .+++|++|++++|....+|. .+++|++|+|++|
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N---- 111 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN---- 111 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC----
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC----
Confidence 344445555555554222 456666666666665554 45666666666544324443 4556666666666
Q ss_pred cccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccC
Q 003265 505 SSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEA 584 (835)
Q Consensus 505 ~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 584 (835)
.+..+|. .+. +|++|++++|+++.+|.. +++|++|++++| .+..+|. .+.+|+.|++++|.+..+
T Consensus 112 ~l~~l~~---~l~-~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l--- 176 (622)
T 3g06_A 112 PLTHLPA---LPS-GLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL--- 176 (622)
T ss_dssp CCCCCCC---CCT-TCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC---
T ss_pred cCCCCCC---CCC-CcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC---
Confidence 5555554 333 666666666666666553 356666666666 4555553 234566666666555421
Q ss_pred CCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceec
Q 003265 585 PEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGI 664 (835)
Q Consensus 585 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l 664 (835)
. ..+++|+.|+++.|....++. ..++|+.|.+++|.... ++ . .+++|+.|++
T Consensus 177 --------------~--~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~-l~---~--~~~~L~~L~L 228 (622)
T 3g06_A 177 --------------P--MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LP---A--LPSGLKELIV 228 (622)
T ss_dssp --------------C--CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS-CC---C--CCTTCCEEEC
T ss_pred --------------c--ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCcccc-cC---C--CCCCCCEEEc
Confidence 0 234566666666555443221 12456666666554331 11 1 1245666666
Q ss_pred ccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCccccc
Q 003265 665 DRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMG 744 (835)
Q Consensus 665 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 744 (835)
++|. ++.++ ..+++|+.|+|++| .+..+|. .+++|+.|+|++|. +..++.
T Consensus 229 s~N~-L~~lp-------------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~~lp~------------ 278 (622)
T 3g06_A 229 SGNR-LTSLP-------------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LTRLPE------------ 278 (622)
T ss_dssp CSSC-CSCCC-------------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CCSCCG------------
T ss_pred cCCc-cCcCC-------------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CCcCCH------------
Confidence 6542 22211 12556666666666 4555554 45666666666653 334433
Q ss_pred CCCCCCcccEeecCCCC
Q 003265 745 HISPFGNLQTLDLSRLP 761 (835)
Q Consensus 745 ~~~~~~~L~~L~l~~~~ 761 (835)
.+..+++|+.|+|++++
T Consensus 279 ~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGGSCTTCEEECCSCC
T ss_pred HHhhccccCEEEecCCC
Confidence 44556666666666654
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=190.48 Aligned_cols=268 Identities=19% Similarity=0.226 Sum_probs=166.8
Q ss_pred EEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-chHhhhhhcccEEeecc
Q 003265 449 LSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELGSSLQLFDISL 527 (835)
Q Consensus 449 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~~~L~~L~L~~ 527 (835)
.+..++.+..+|.. -.++|++|++++|....++...|.++++|++|+|++| .+..++ ..++.+. +|++|+|++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN----GINTIEEDSFSSLG-SLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS----CCCEECTTTTTTCT-TCCEEECCS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC----ccCccCHhhcCCCC-CCCEEECCC
Confidence 55566677776653 2358888888866644777766888888888888888 777764 4577787 888888888
Q ss_pred ccccccchh-hcCCCCCcEEecccccccCCcch-HHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCC
Q 003265 528 TLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPR-QLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLK 605 (835)
Q Consensus 528 ~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 605 (835)
|.++.+|.. ++.+++|++|++++| .+..+|. ..+.++++|++|++++|.... ......+..++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~--------------~~~~~~~~~l~ 174 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFT--------------KIQRKDFAGLT 174 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCC--------------EECTTTTTTCC
T ss_pred CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccc--------------ccCHHHccCCC
Confidence 888888776 788888888888888 6777776 447888888888888774221 11123456677
Q ss_pred CCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccC
Q 003265 606 YLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRR 685 (835)
Q Consensus 606 ~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 685 (835)
+|+.|+++.+....+ .+ ..+..+++|++|++++|.. ..+......
T Consensus 175 ~L~~L~l~~n~l~~~--------------------------~~--~~l~~l~~L~~L~l~~n~l-~~~~~~~~~------ 219 (353)
T 2z80_A 175 FLEELEIDASDLQSY--------------------------EP--KSLKSIQNVSHLILHMKQH-ILLLEIFVD------ 219 (353)
T ss_dssp EEEEEEEEETTCCEE--------------------------CT--TTTTTCSEEEEEEEECSCS-TTHHHHHHH------
T ss_pred CCCEEECCCCCcCcc--------------------------CH--HHHhccccCCeecCCCCcc-ccchhhhhh------
Confidence 777777765543221 11 2445556666666665542 222222221
Q ss_pred CcccCCCccEEeEecCCCCCCCc-----hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCC
Q 003265 686 EPFVFRSLHLVAIYECHKLKDLT-----FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRL 760 (835)
Q Consensus 686 ~~~~~~~L~~L~L~~c~~l~~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 760 (835)
.+++|+.|++++| .+..++ .....+.++.++++++.....-.. .++..+..+++|+.|+++++
T Consensus 220 ---~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~--------~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 220 ---VTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF--------QVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp ---HTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHH--------HHHHHHHTCTTCCEEECCSS
T ss_pred ---hcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchh--------hhHHHHhcccCCCEEECCCC
Confidence 3566777777766 333322 123455666666666543221100 01113456677777777764
Q ss_pred CccccccCCC-CCCCCccEEEEecCCC
Q 003265 761 PILKSIYWKP-LPFTHLKEMAVTHGCN 786 (835)
Q Consensus 761 ~~l~~l~~~~-~~~~~L~~L~i~~~C~ 786 (835)
+++.++... ..+++|+.|+++ +++
T Consensus 288 -~l~~i~~~~~~~l~~L~~L~L~-~N~ 312 (353)
T 2z80_A 288 -QLKSVPDGIFDRLTSLQKIWLH-TNP 312 (353)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECC-SSC
T ss_pred -CCCccCHHHHhcCCCCCEEEee-CCC
Confidence 456666553 466777777776 553
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=3.8e-18 Score=189.79 Aligned_cols=212 Identities=19% Similarity=0.180 Sum_probs=122.4
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
..+...+..+..+|.. +.+++.+++++|.+..++. .+++|++|++++|....++.. .++|++|++++|
T Consensus 74 ~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n---- 141 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN---- 141 (454)
T ss_dssp SEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS----
T ss_pred CEEEecCCccccCCCC--cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC----CCCCCEEECcCC----
Confidence 4455555555555542 3577777777777776653 246677777775543233321 156777777777
Q ss_pred cccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccC
Q 003265 505 SSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEA 584 (835)
Q Consensus 505 ~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 584 (835)
.+..+| .++.+. +|++|++++|.++.+|..+ .+|++|++++| .+..+|. ++++++|++|++++|.+......
T Consensus 142 ~l~~lp-~~~~l~-~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 142 QLEKLP-ELQNSS-FLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCSSCC-CCTTCT-TCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCCc-ccCCCC-CCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCC
Confidence 666666 466666 7777777777776666543 46777777776 5666663 66777777777776665532111
Q ss_pred CCc-c--cccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccc
Q 003265 585 PED-S--VLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNE 661 (835)
Q Consensus 585 ~~~-~--~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 661 (835)
... . .........+..++.+++|+.|+++.+....++. ...+|+.|++++|.... ++ . .+++|+.
T Consensus 214 ~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~---~--~~~~L~~ 281 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LP---E--LPQSLTF 281 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CC---C--CCTTCCE
T ss_pred cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cC---c--ccCcCCE
Confidence 100 0 0000011112236677888888888776554332 23578888887765432 22 1 1256777
Q ss_pred eeccccc
Q 003265 662 LGIDRAE 668 (835)
Q Consensus 662 L~l~~~~ 668 (835)
|++++|.
T Consensus 282 L~ls~N~ 288 (454)
T 1jl5_A 282 LDVSENI 288 (454)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 7777654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=193.71 Aligned_cols=221 Identities=21% Similarity=0.200 Sum_probs=108.6
Q ss_pred ceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhccc
Q 003265 445 NVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQ 521 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~ 521 (835)
+++.|++++|.+..++. +.++++|++|++++|....++...|.++++|++|+|++| .+..+|. .+..+. +|+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~ 139 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN----RLTTIPNGAFVYLS-KLK 139 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS----CCSSCCTTTSCSCS-SCC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC----cCCeeCHhHhhccc-cCc
Confidence 44444444444444321 244444444444433322344334444444444444444 4444443 233443 444
Q ss_pred EEeeccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHh
Q 003265 522 LFDISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQE 600 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (835)
+|+|++|.++.+|. .+..+++|++|++++|..+..++.+.+.++++|++|++++|.+.. +..
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~ 202 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-----------------IPN 202 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-----------------CCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-----------------ccc
Confidence 44444444444433 344444444444444434444444334444444444444443331 001
Q ss_pred hcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhc
Q 003265 601 LLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEI 680 (835)
Q Consensus 601 l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 680 (835)
+..+ ++|+.|+|++|......+ ..+..+++|+.|++++|. +..+.+..+.
T Consensus 203 ~~~l--------------------------~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~~~- 252 (440)
T 3zyj_A 203 LTPL--------------------------IKLDELDLSGNHLSAIRP--GSFQGLMHLQKLWMIQSQ-IQVIERNAFD- 252 (440)
T ss_dssp CTTC--------------------------SSCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCC-CCEECTTSST-
T ss_pred cCCC--------------------------cccCEEECCCCccCccCh--hhhccCccCCEEECCCCc-eeEEChhhhc-
Confidence 2222 345555555543332222 356667778888887654 3333333332
Q ss_pred ccccCCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCcc
Q 003265 681 VRKRREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNA 726 (835)
Q Consensus 681 ~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~ 726 (835)
.+++|+.|+|++| .+..++ .+..+++|+.|+|++|+.
T Consensus 253 --------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 253 --------NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp --------TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred --------CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 4777888888777 566655 356777888888877653
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.4e-18 Score=192.28 Aligned_cols=223 Identities=18% Similarity=0.130 Sum_probs=107.2
Q ss_pred CcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-chHhhhhhcccEEeeccccccccchh-hcCCCCC
Q 003265 466 PHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELGSSLQLFDISLTLIKELPEE-LKKLVNL 543 (835)
Q Consensus 466 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L 543 (835)
++++.|++++|+...+++..|.++++|++|+|++| .+..++ ..+..+. +|++|+|++|.++.+|.. +..+++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN----SIRQIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC----ccCCcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCC
Confidence 34444444433322333333444444444444444 343332 2333444 444444444444444332 4444444
Q ss_pred cEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHH
Q 003265 544 KCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQIL 623 (835)
Q Consensus 544 ~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l 623 (835)
++|+|++| .+..+|...+.++++|++|++++|.... ......+..+++|+.|+++.+....++.
T Consensus 150 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 213 (452)
T 3zyi_A 150 RELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEGLFNLKYLNLGMCNIKDMPN- 213 (452)
T ss_dssp CEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCTTCCEEECTTSCCSSCCC-
T ss_pred CEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccCCCCCCEEECCCCccccccc-
Confidence 44444444 3444444334444444444444432211 0001123334444444444333332211
Q ss_pred hhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCC
Q 003265 624 LSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHK 703 (835)
Q Consensus 624 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 703 (835)
....++|+.|++++|......+ ..+..+++|+.|++++|.. ..+.+..+. .+++|+.|+|++| .
T Consensus 214 ---~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l-~~~~~~~~~---------~l~~L~~L~L~~N-~ 277 (452)
T 3zyi_A 214 ---LTPLVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNSQV-SLIERNAFD---------GLASLVELNLAHN-N 277 (452)
T ss_dssp ---CTTCTTCCEEECTTSCCSEECG--GGGTTCTTCCEEECTTSCC-CEECTTTTT---------TCTTCCEEECCSS-C
T ss_pred ---ccccccccEEECcCCcCcccCc--ccccCccCCCEEEeCCCcC-ceECHHHhc---------CCCCCCEEECCCC-c
Confidence 1112345555555554433322 3566777888888876543 333333332 4778888888887 5
Q ss_pred CCCCc--hhhccCCccEEeeecCc
Q 003265 704 LKDLT--FLVFAPSLKSLSLYGCN 725 (835)
Q Consensus 704 l~~l~--~l~~l~~L~~L~L~~~~ 725 (835)
+..++ .+..+++|+.|+|++|+
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCccChHHhccccCCCEEEccCCC
Confidence 66665 35677888888888765
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=6.2e-18 Score=188.28 Aligned_cols=242 Identities=17% Similarity=0.213 Sum_probs=184.5
Q ss_pred eEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-chHhhhhhcccEEe
Q 003265 446 VRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELGSSLQLFD 524 (835)
Q Consensus 446 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~~~L~~L~ 524 (835)
.+.+...+..+..+|.. -.++++.|++++|....++...|.++++|++|+|++| .+..++ ..+..+. +|++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n----~i~~i~~~~~~~l~-~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN----HIRTIEIGAFNGLA-NLNTLE 118 (440)
T ss_dssp SCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS----CCCEECGGGGTTCS-SCCEEE
T ss_pred CCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC----cCCccChhhccCCc-cCCEEE
Confidence 34566667777777654 2378999999977655777777999999999999999 888876 5677888 999999
Q ss_pred eccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 525 ISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 525 L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
|++|.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++++|.... ......+..
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~ 183 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEG 183 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTT
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhc
Confidence 99999999976 5899999999999999 6888888779999999999999865432 111123555
Q ss_pred CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccc
Q 003265 604 LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRK 683 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 683 (835)
+++|+.|+++.+.. . .++ .+..+++|+.|++++|. +..+.+..+.
T Consensus 184 l~~L~~L~L~~n~l--------------------------~-~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---- 228 (440)
T 3zyj_A 184 LSNLRYLNLAMCNL--------------------------R-EIP---NLTPLIKLDELDLSGNH-LSAIRPGSFQ---- 228 (440)
T ss_dssp CSSCCEEECTTSCC--------------------------S-SCC---CCTTCSSCCEEECTTSC-CCEECTTTTT----
T ss_pred ccccCeecCCCCcC--------------------------c-ccc---ccCCCcccCEEECCCCc-cCccChhhhc----
Confidence 66666666654322 1 222 46678899999999874 4444444443
Q ss_pred cCCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCC
Q 003265 684 RREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLP 761 (835)
Q Consensus 684 ~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 761 (835)
.+++|+.|+|++| .+..++ .+..+++|+.|+|++|. ++.++. ..+..+++|+.|+|++++
T Consensus 229 -----~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 -----GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN-LTLLPH-----------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -----TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC-CCCCCT-----------TTTSSCTTCCEEECCSSC
T ss_pred -----cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC-CCccCh-----------hHhccccCCCEEEcCCCC
Confidence 5899999999999 566654 47899999999999974 445443 256778999999999865
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.8e-17 Score=189.98 Aligned_cols=255 Identities=18% Similarity=0.119 Sum_probs=204.1
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEe
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFD 524 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~ 524 (835)
.++.++++++.+..+|.... ++|++|++++|....+|. .+++|++|+|++| .++.+|. .+. +|++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N----~l~~lp~---~l~-~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN----QLTSLPV---LPP-GLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC----CCSCCCC---CCT-TCCEEE
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC----cCCcCCC---CCC-CCCEEE
Confidence 58899999999998876533 899999999776447765 5789999999999 8888987 566 999999
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCC
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGL 604 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 604 (835)
|++|.++.+|. .+.+|++|++++| .+..+|.. +++|++|++++|.+..+. ..+
T Consensus 108 Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~-------------------~~~ 160 (622)
T 3g06_A 108 IFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLP-------------------ALP 160 (622)
T ss_dssp ECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCC-------------------CCC
T ss_pred CcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcC-------------------Ccc
Confidence 99999999988 6789999999999 78888874 489999999999876411 134
Q ss_pred CCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhccccc
Q 003265 605 KYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKR 684 (835)
Q Consensus 605 ~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 684 (835)
.+|+.|+++.|....++ ..+++|+.|++++|.... ++ . .+++|+.|++++|.. ..+.
T Consensus 161 ~~L~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~~-l~---~--~~~~L~~L~L~~N~l-~~l~---------- 217 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLP------MLPSGLQELSVSDNQLAS-LP---T--LPSELYKLWAYNNRL-TSLP---------- 217 (622)
T ss_dssp TTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSC-CC---C--CCTTCCEEECCSSCC-SSCC----------
T ss_pred CCCCEEECCCCCCCCCc------ccCCCCcEEECCCCCCCC-CC---C--ccchhhEEECcCCcc-cccC----------
Confidence 68899999988776654 234789999999986543 22 1 247899999987653 3221
Q ss_pred CCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccc
Q 003265 685 REPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILK 764 (835)
Q Consensus 685 ~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 764 (835)
..+++|+.|+|++| .++.+| ..+++|+.|+|++| .++.++. .+++|+.|+|++| +++
T Consensus 218 ---~~~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~---------------~~~~L~~L~Ls~N-~L~ 274 (622)
T 3g06_A 218 ---ALPSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLT 274 (622)
T ss_dssp ---CCCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCC
T ss_pred ---CCCCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc---------------ccccCcEEeCCCC-CCC
Confidence 13689999999999 678777 67799999999997 4444421 5789999999996 678
Q ss_pred cccCCCCCCCCccEEEEecCCC
Q 003265 765 SIYWKPLPFTHLKEMAVTHGCN 786 (835)
Q Consensus 765 ~l~~~~~~~~~L~~L~i~~~C~ 786 (835)
.+|.....+++|+.|+++ +|+
T Consensus 275 ~lp~~l~~l~~L~~L~L~-~N~ 295 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLE-GNP 295 (622)
T ss_dssp SCCGGGGGSCTTCEEECC-SCC
T ss_pred cCCHHHhhccccCEEEec-CCC
Confidence 888778889999999999 775
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=6.2e-18 Score=188.98 Aligned_cols=241 Identities=16% Similarity=0.140 Sum_probs=172.5
Q ss_pred ceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEeeccccccccc-hhhcCCCCCcE
Q 003265 468 LLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDISLTLIKELP-EELKKLVNLKC 545 (835)
Q Consensus 468 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~ 545 (835)
...+++++.....+|..+ .++|++|+|++| .+..+ |..+..+. +|++|+|++|.++.++ ..+..+++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n----~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMEN----NIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp SCEEECCSSCCSSCCSCC---CTTCSEEECCSS----CCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CcEEEECCCCcCccCCCC---CCCccEEECcCC----cCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCE
Confidence 456777744333777653 268999999999 77776 56678888 9999999999998885 67889999999
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhh
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLS 625 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~ 625 (835)
|+|++| .+..+|.+.+..+++|++|++++|.+.... ...+..+++|+.|+++.
T Consensus 128 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~~L~~L~l~~----------- 180 (452)
T 3zyi_A 128 LELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIP---------------SYAFNRVPSLMRLDLGE----------- 180 (452)
T ss_dssp EECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEEC---------------TTTTTTCTTCCEEECCC-----------
T ss_pred EECCCC-cCCccChhhhcccCCCCEEECCCCCcceeC---------------HhHHhcCCcccEEeCCC-----------
Confidence 999999 688888777888999999999988776321 12255566666666543
Q ss_pred cccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCC
Q 003265 626 SNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLK 705 (835)
Q Consensus 626 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 705 (835)
++....++ ...+..+++|+.|++++|.. ..+ +. . ..+++|+.|+|++| .+.
T Consensus 181 ---------------~~~l~~i~-~~~~~~l~~L~~L~L~~n~l-~~~-~~-~---------~~l~~L~~L~Ls~N-~l~ 231 (452)
T 3zyi_A 181 ---------------LKKLEYIS-EGAFEGLFNLKYLNLGMCNI-KDM-PN-L---------TPLVGLEELEMSGN-HFP 231 (452)
T ss_dssp ---------------CTTCCEEC-TTTTTTCTTCCEEECTTSCC-SSC-CC-C---------TTCTTCCEEECTTS-CCS
T ss_pred ---------------CCCccccC-hhhccCCCCCCEEECCCCcc-ccc-cc-c---------cccccccEEECcCC-cCc
Confidence 22222222 12566788999999987753 322 11 1 35889999999998 455
Q ss_pred CC-c-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCC-CCCCCccEEEEe
Q 003265 706 DL-T-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKP-LPFTHLKEMAVT 782 (835)
Q Consensus 706 ~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~ 782 (835)
.+ + .+..+++|+.|+|++|... .+.. ..+..+++|+.|+|+++ +++.++... ..+++|+.|+++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVS-LIER-----------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCC-EECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECC
T ss_pred ccCcccccCccCCCEEEeCCCcCc-eECH-----------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEcc
Confidence 54 3 5788999999999987543 3322 25677899999999986 677776543 468899999998
Q ss_pred cCCC
Q 003265 783 HGCN 786 (835)
Q Consensus 783 ~~C~ 786 (835)
++|
T Consensus 299 -~Np 301 (452)
T 3zyi_A 299 -HNP 301 (452)
T ss_dssp -SSC
T ss_pred -CCC
Confidence 654
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=9.5e-18 Score=196.59 Aligned_cols=359 Identities=17% Similarity=0.127 Sum_probs=223.1
Q ss_pred cEEEEcCCCcccCCc--cccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecC
Q 003265 425 NFLVCAGAGLKEAPD--VKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYC 500 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~ 500 (835)
..+......+..++. .....+++.|++++|.+..++. +.++++|++|+|++|....+|...|.++++|++|+|++|
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC
Confidence 345555556666653 4567899999999999998865 478999999999977655888888999999999999999
Q ss_pred CCCccccccCch-HhhhhhcccEEeeccccccc--cchhhcCCCCCcEEecccccccCCcchHHhccCcccc----eeee
Q 003265 501 GQSWSSFQLPVG-MSELGSSLQLFDISLTLIKE--LPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLC----VLRM 573 (835)
Q Consensus 501 ~~~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~--Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~----~L~l 573 (835)
.+..+|.. ++.+. +|++|+|++|.++. +|..++.+++|++|++++| .+..++.+.+..+.+++ .+++
T Consensus 135 ----~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 135 ----NLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ----CCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ----cCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhhc
Confidence 88888764 78898 99999999999875 4788999999999999998 56665543344433322 2222
Q ss_pred cCcCccCccc-------------------------------------------------CCC------------------
Q 003265 574 FGTGWFNFHE-------------------------------------------------APE------------------ 586 (835)
Q Consensus 574 ~~~~~~~~~~-------------------------------------------------~~~------------------ 586 (835)
+.+.+..... ...
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 2221110000 000
Q ss_pred --------------cc-------------------ccc-------------------------------CCcccchHhhc
Q 003265 587 --------------DS-------------------VLF-------------------------------GGGEVLVQELL 602 (835)
Q Consensus 587 --------------~~-------------------~~~-------------------------------~~~~~~~~~l~ 602 (835)
.. ... ......+....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 00 000 00000011123
Q ss_pred CCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhc--
Q 003265 603 GLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEI-- 680 (835)
Q Consensus 603 ~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~-- 680 (835)
.+++|+.|+++.+................+|+.|.+..+...... ..+..+++|+.+++.++.............
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC---SCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccccc---ccccccccccchhhhhcccccccccccccccc
Confidence 578899999887654322111111111235666665554322211 133344455555554432221111000000
Q ss_pred ------------cc-ccCCcccCCCccEEeEecCCCCCCC-c-hhhccCCccEEeeecCccchhhcccCccCCCcccccC
Q 003265 681 ------------VR-KRREPFVFRSLHLVAIYECHKLKDL-T-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGH 745 (835)
Q Consensus 681 ------------~~-~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 745 (835)
.. .+.....+++|+.|+|++|.....+ | .+..+++|++|+|++|. ++.++. ..
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-----------~~ 513 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-----------TA 513 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----------TT
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh-----------HH
Confidence 00 0111135788999999988655443 2 47789999999999875 444432 26
Q ss_pred CCCCCcccEeecCCCCccccccCC-CCCCCCccEEEEecCCCcCCCCCCCC-Ccc--cccceEEec
Q 003265 746 ISPFGNLQTLDLSRLPILKSIYWK-PLPFTHLKEMAVTHGCNQLRKLPLDS-NSA--KERKFVIRG 807 (835)
Q Consensus 746 ~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~~~C~~L~~lp~~~-~~~--~l~~~~i~~ 807 (835)
+..+++|++|+|+++ +++.++.. ...+++|+.|+++ .++|+.+|... ... +|+.+.+.+
T Consensus 514 f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS--LNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECT--TSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECC--CCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 778999999999985 57776543 4568999999998 45777775543 332 577788765
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=2.5e-18 Score=181.72 Aligned_cols=243 Identities=18% Similarity=0.169 Sum_probs=174.2
Q ss_pred eEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-HhhhhhcccEEeecccccccc---chhhcCCCCCc
Q 003265 469 LTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQLFDISLTLIKEL---PEELKKLVNLK 544 (835)
Q Consensus 469 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~L---p~~i~~L~~L~ 544 (835)
+.++++++....+|..+ .++|++|+|++| .+..+|.. +..+. +|++|+|++|.++.+ |..+..+++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n----~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESN----KLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSS----CCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCC----ccCccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccC
Confidence 46677744433777653 368999999999 88888876 46787 999999999988766 67788899999
Q ss_pred EEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHh
Q 003265 545 CLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILL 624 (835)
Q Consensus 545 ~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~ 624 (835)
+|++++| .+..+|.. +..+++|++|++++|.+.... ....+..+++|+.|+++.+.
T Consensus 82 ~L~Ls~n-~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~--------------~~~~~~~l~~L~~L~l~~n~-------- 137 (306)
T 2z66_A 82 YLDLSFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMS--------------EFSVFLSLRNLIYLDISHTH-------- 137 (306)
T ss_dssp EEECCSC-SEEEEEEE-EETCTTCCEEECTTSEEESST--------------TTTTTTTCTTCCEEECTTSC--------
T ss_pred EEECCCC-ccccChhh-cCCCCCCCEEECCCCcccccc--------------cchhhhhccCCCEEECCCCc--------
Confidence 9999999 67788876 889999999999988766311 11235556666666665332
Q ss_pred hcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCC
Q 003265 625 SSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKL 704 (835)
Q Consensus 625 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 704 (835)
.....+ ..+..+++|+.|++++|.......+..+ ..+++|+.|+|++| .+
T Consensus 138 ------------------l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------~~l~~L~~L~Ls~n-~l 187 (306)
T 2z66_A 138 ------------------TRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIF---------TELRNLTFLDLSQC-QL 187 (306)
T ss_dssp ------------------CEECST--TTTTTCTTCCEEECTTCEEGGGEECSCC---------TTCTTCCEEECTTS-CC
T ss_pred ------------------CCccch--hhcccCcCCCEEECCCCccccccchhHH---------hhCcCCCEEECCCC-Cc
Confidence 211111 2566788999999998764332233333 35899999999999 56
Q ss_pred CCC-c-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCC-CccEEEE
Q 003265 705 KDL-T-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFT-HLKEMAV 781 (835)
Q Consensus 705 ~~l-~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~i 781 (835)
..+ + .+..+++|+.|+|++|.. ..++. ..+..+++|+.|+++++.-....+.....+| +|+.|++
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNF-FSLDT-----------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCC-SBCCS-----------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCcCHHHhcCCCCCCEEECCCCcc-CccCh-----------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 665 3 578899999999999754 33322 1466789999999999754444454556674 8999999
Q ss_pred ecCCC
Q 003265 782 THGCN 786 (835)
Q Consensus 782 ~~~C~ 786 (835)
+ +++
T Consensus 256 ~-~N~ 259 (306)
T 2z66_A 256 T-QND 259 (306)
T ss_dssp T-TCC
T ss_pred c-CCC
Confidence 8 653
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.9e-19 Score=191.06 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=60.3
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVN 542 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~ 542 (835)
..+++|++|++++|....+++..|.++++|++|+|++| .+..+++ +..+. +|++|++++|.++.+|. +++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~~~~-~~~l~-~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN----VLYETLD-LESLS-TLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS----CCEEEEE-ETTCT-TCCEEECCSSEEEEEEE----CTT
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC----cCCcchh-hhhcC-CCCEEECcCCccccccC----CCC
Confidence 34556666666655433555455666666666666666 5554443 55565 66666666666665542 356
Q ss_pred CcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|++|++++| .+..++. ..+++|++|++++|.+.
T Consensus 101 L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 101 IETLHAANN-NISRVSC---SRGQGKKNIYLANNKIT 133 (317)
T ss_dssp CCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCC
T ss_pred cCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCC
Confidence 666666666 4555543 23556666666666554
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.2e-17 Score=185.69 Aligned_cols=272 Identities=21% Similarity=0.173 Sum_probs=154.7
Q ss_pred CceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEE
Q 003265 444 ENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLF 523 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L 523 (835)
.+++.+++.+|.+..++....+++|++|++++|....+|.. ..+|++|++++| .+..+| .++.+. +|++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n----~l~~l~-~~~~l~-~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN----QLEELP-ELQNLP-FLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS----CCSSCC-CCTTCT-TCCEE
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC----cCCcCc-cccCCC-CCCEE
Confidence 35566666666665555555566666666664433243332 235666666666 555555 456666 66666
Q ss_pred eeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 524 DISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 524 ~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
++++|.++.+|... .+|++|++++| .+..+|. ++.+++|++|++++|.+.... ..
T Consensus 201 ~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~-------------------~~ 255 (454)
T 1jl5_A 201 YADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLP-------------------DL 255 (454)
T ss_dssp ECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC-------------------SC
T ss_pred ECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCccc-------------------cc
Confidence 66666666665432 46777777776 5566774 777777777777777655310 12
Q ss_pred CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccc
Q 003265 604 LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRK 683 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 683 (835)
+++|+.|+++.+....++. ..++|+.|++++|.... ++ .+ .++|+.|++++|.. ..+ .
T Consensus 256 ~~~L~~L~l~~N~l~~l~~------~~~~L~~L~ls~N~l~~-l~---~~--~~~L~~L~l~~N~l-~~i-----~---- 313 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTDLPE------LPQSLTFLDVSENIFSG-LS---EL--PPNLYYLNASSNEI-RSL-----C---- 313 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSE-ES---CC--CTTCCEEECCSSCC-SEE-----C----
T ss_pred ccccCEEECCCCcccccCc------ccCcCCEEECcCCccCc-cc---Cc--CCcCCEEECcCCcC-Ccc-----c----
Confidence 4789999998887665332 23689999999876432 21 11 26899999987643 211 1
Q ss_pred cCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCcc
Q 003265 684 RREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPIL 763 (835)
Q Consensus 684 ~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 763 (835)
...++|+.|++++| .+..+|. .+++|++|++++|. ++.++ . .+++|++|+++++.-.
T Consensus 314 ----~~~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~L~~N~-l~~lp-------------~--~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 314 ----DLPPSLEELNVSNN-KLIELPA--LPPRLERLIASFNH-LAEVP-------------E--LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp ----CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCC-------------C--CCTTCCEEECCSSCCS
T ss_pred ----CCcCcCCEEECCCC-ccccccc--cCCcCCEEECCCCc-ccccc-------------c--hhhhccEEECCCCCCC
Confidence 11358999999988 5666663 26889999998874 33432 1 4688999999886433
Q ss_pred c--cccCCCCCC-------------CCccEEEEecCCCcCC---CCCCCCCc
Q 003265 764 K--SIYWKPLPF-------------THLKEMAVTHGCNQLR---KLPLDSNS 797 (835)
Q Consensus 764 ~--~l~~~~~~~-------------~~L~~L~i~~~C~~L~---~lp~~~~~ 797 (835)
. .+|.....+ ++|+.|+++ ++ .++ .+|.....
T Consensus 371 ~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls-~N-~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE-TN-PLREFPDIPESVED 420 (454)
T ss_dssp SCCCCCTTCCEEECCC------------------------------------
T ss_pred cCCCChHHHHhhhhcccccccccccCcCCEEECC-CC-cCCccccchhhHhh
Confidence 3 344444444 789999998 54 555 45554433
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=8.8e-18 Score=178.14 Aligned_cols=267 Identities=16% Similarity=0.061 Sum_probs=187.0
Q ss_pred cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-chHhhhhhcccEEeeccccccccchhhcCCCCCcE
Q 003265 467 HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMSELGSSLQLFDISLTLIKELPEELKKLVNLKC 545 (835)
Q Consensus 467 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~ 545 (835)
.++.++++.+.....+...+..+++|++|+|++| .+..++ ..+..+. +|++|+|++|.++.++. +..+++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~-~~~l~~L~~ 84 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN----PLSQISAADLAPFT-KLELLNLSSNVLYETLD-LESLSTLRT 84 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTS----CCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE-ETTCTTCCE
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCC----ccCcCCHHHhhCCC-cCCEEECCCCcCCcchh-hhhcCCCCE
Confidence 3455566644333566677888899999999999 788776 5788888 99999999999988775 899999999
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhh
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLS 625 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~ 625 (835)
|++++| .+..+| .+++|++|++++|.+.... ...+++|+.|+++.+....+...
T Consensus 85 L~Ls~n-~l~~l~-----~~~~L~~L~l~~n~l~~~~------------------~~~~~~L~~L~l~~N~l~~~~~~-- 138 (317)
T 3o53_A 85 LDLNNN-YVQELL-----VGPSIETLHAANNNISRVS------------------CSRGQGKKNIYLANNKITMLRDL-- 138 (317)
T ss_dssp EECCSS-EEEEEE-----ECTTCCEEECCSSCCSEEE------------------ECCCSSCEEEECCSSCCCSGGGB--
T ss_pred EECcCC-cccccc-----CCCCcCEEECCCCccCCcC------------------ccccCCCCEEECCCCCCCCccch--
Confidence 999999 566655 3489999999998876411 12367788899888776654321
Q ss_pred cccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCC
Q 003265 626 SNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLK 705 (835)
Q Consensus 626 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~ 705 (835)
.....++|+.|++++|......+ ......+++|+.|++++|.. ..+ +.. ..+++|+.|+|++| .+.
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l-~~~-~~~----------~~l~~L~~L~Ls~N-~l~ 204 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFI-YDV-KGQ----------VVFAKLKTLDLSSN-KLA 204 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCC-CEE-ECC----------CCCTTCCEEECCSS-CCC
T ss_pred hhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcC-ccc-ccc----------cccccCCEEECCCC-cCC
Confidence 12234678888888876543322 11224677888888887653 322 111 23788888888888 566
Q ss_pred CCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCcc-ccccCCCCCCCCccEEEEec
Q 003265 706 DLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPIL-KSIYWKPLPFTHLKEMAVTH 783 (835)
Q Consensus 706 ~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~i~~ 783 (835)
.++ .+..+++|+.|+|++|. ++.++. .+..+++|+.|++++++-. ..++.....+++|+.|++.
T Consensus 205 ~l~~~~~~l~~L~~L~L~~N~-l~~l~~------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~- 270 (317)
T 3o53_A 205 FMGPEFQSAAGVTWISLRNNK-LVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ- 270 (317)
T ss_dssp EECGGGGGGTTCSEEECTTSC-CCEECT------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH-
T ss_pred cchhhhcccCcccEEECcCCc-ccchhh------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC-
Confidence 554 57788888888888864 445543 5667788888888886544 2344444567788888887
Q ss_pred CCCcCCCCCC
Q 003265 784 GCNQLRKLPL 793 (835)
Q Consensus 784 ~C~~L~~lp~ 793 (835)
+|+.++..+.
T Consensus 271 ~~~~l~~~~~ 280 (317)
T 3o53_A 271 TVKKLTGQNE 280 (317)
T ss_dssp HHHHHHSSSS
T ss_pred CchhccCCch
Confidence 7777775543
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=8.9e-18 Score=175.39 Aligned_cols=220 Identities=17% Similarity=0.152 Sum_probs=155.3
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L 525 (835)
+.++..++.+..+|.. -.++|+.|++++|....++...|.++++|++|+|++| .+..+ |..+..+. +|++|++
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n----~l~~~~~~~~~~l~-~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN----VLARIDAAAFTGLA-LLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS----CCCEECTTTTTTCT-TCCEEEC
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC----ccceeCHhhcCCcc-CCCEEeC
Confidence 4566666666666542 3568888888866655777667888889999999988 77776 66777887 8999999
Q ss_pred cccc-cccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 526 SLTL-IKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 526 ~~~~-i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
++|. +..+ |..+..+++|++|++++| .+..++...+.++++|++|++++|.+.... ...+..
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~ 151 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALP---------------DDTFRD 151 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTTTT
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccC---------------HhHhcc
Confidence 8886 8877 667888889999999888 566675555888888999998888765311 122555
Q ss_pred CCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccc
Q 003265 604 LKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRK 683 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 683 (835)
+++|+.|+++.+.... ..+ ..+..+++|+.|++++|.. ..+.+..+.
T Consensus 152 l~~L~~L~l~~n~l~~--------------------------~~~--~~~~~l~~L~~L~l~~n~l-~~~~~~~~~---- 198 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISS--------------------------VPE--RAFRGLHSLDRLLLHQNRV-AHVHPHAFR---- 198 (285)
T ss_dssp CTTCCEEECCSSCCCE--------------------------ECT--TTTTTCTTCCEEECCSSCC-CEECTTTTT----
T ss_pred CCCccEEECCCCcccc--------------------------cCH--HHhcCccccCEEECCCCcc-cccCHhHcc----
Confidence 6666666665443221 111 2456677888888887653 333333332
Q ss_pred cCCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccc
Q 003265 684 RREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAM 727 (835)
Q Consensus 684 ~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l 727 (835)
.+++|+.|+|++| .+..++ .+..+++|+.|+|++|+..
T Consensus 199 -----~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 199 -----DLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp -----TCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred -----CcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4788899999888 566665 3778889999999887654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=6.7e-17 Score=181.55 Aligned_cols=237 Identities=15% Similarity=0.062 Sum_probs=154.5
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVN 542 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~ 542 (835)
..+++|++|++++|....+++..|.++++|++|+|++| .+..+++ ++.+. +|++|+|++|.++.+|. .++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~-l~~l~-~L~~L~Ls~N~l~~l~~----~~~ 100 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN----VLYETLD-LESLS-TLRTLDLNNNYVQELLV----GPS 100 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS----CCEEEEE-CTTCT-TCCEEECCSSEEEEEEE----CTT
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC----CCCCCcc-cccCC-CCCEEEecCCcCCCCCC----CCC
Confidence 34557777777766544666555777777777777777 6655544 66776 77777777777777663 267
Q ss_pred CcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHH
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQI 622 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 622 (835)
|++|++++| .+..+|. ..+++|++|++++|.+.... ...++.++
T Consensus 101 L~~L~L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~----------------- 144 (487)
T 3oja_A 101 IETLHAANN-NISRVSC---SRGQGKKNIYLANNKITMLR---------------DLDEGCRS----------------- 144 (487)
T ss_dssp CCEEECCSS-CCCCEEE---CCCSSCEEEECCSSCCCSGG---------------GBCGGGGS-----------------
T ss_pred cCEEECcCC-cCCCCCc---cccCCCCEEECCCCCCCCCC---------------chhhcCCC-----------------
Confidence 777777777 5666654 24567777777776655310 11123333
Q ss_pred HhhcccccccceeeecCCCCCCCcccccccc-cccccccceecccccccccccccchhcccccCCcccCCCccEEeEecC
Q 003265 623 LLSSNRLKSCIRSLFLPLAGDATSIIDATAF-ADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYEC 701 (835)
Q Consensus 623 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 701 (835)
+|+.|++++|......+ ..+ ..+++|+.|++++|.. ..+ +.. ..+++|+.|+|++|
T Consensus 145 ---------~L~~L~Ls~N~l~~~~~--~~l~~~l~~L~~L~Ls~N~l-~~~-~~~----------~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 145 ---------RVQYLDLKLNEIDTVNF--AELAASSDTLEHLNLQYNFI-YDV-KGQ----------VVFAKLKTLDLSSN 201 (487)
T ss_dssp ---------SEEEEECTTSCCCEEEG--GGGGGGTTTCCEEECTTSCC-CEE-ECC----------CCCTTCCEEECCSS
T ss_pred ---------CCCEEECCCCCCCCcCh--HHHhhhCCcccEEecCCCcc-ccc-ccc----------ccCCCCCEEECCCC
Confidence 45555555554333222 233 3678999999998763 322 111 24889999999998
Q ss_pred CCCCCCc-hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCcc-ccccCCCCCCCCccEE
Q 003265 702 HKLKDLT-FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPIL-KSIYWKPLPFTHLKEM 779 (835)
Q Consensus 702 ~~l~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L 779 (835)
.+..++ .+..+++|+.|+|++|. +..++. .+..+++|+.|++++++-. ..++.....++.|+.+
T Consensus 202 -~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 202 -KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp -CCCEECGGGGGGTTCSEEECTTSC-CCEECT------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred -CCCCCCHhHcCCCCccEEEecCCc-Ccccch------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 566654 57889999999999875 444544 5677899999999987644 2444344567777777
Q ss_pred EEe
Q 003265 780 AVT 782 (835)
Q Consensus 780 ~i~ 782 (835)
.+.
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 764
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=2.4e-17 Score=174.38 Aligned_cols=241 Identities=18% Similarity=0.162 Sum_probs=127.6
Q ss_pred CCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccc--cCchHh-------hhhhcccEEeecccccc-ccc
Q 003265 465 CPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQ--LPVGMS-------ELGSSLQLFDISLTLIK-ELP 534 (835)
Q Consensus 465 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~--lp~~i~-------~l~~~L~~L~L~~~~i~-~Lp 534 (835)
.++|+.|++++|.. .+|..+... |++|+|++| .+.. +|..++ .+. +|++|+|++|.++ .+|
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n----~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRL----TVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEE----EEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCC
T ss_pred CCCceeEeeccccc-ccHHHHHHH---Hhhcccccc----cccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhH
Confidence 34455555665544 455443322 666666666 4432 454444 455 6777777776665 456
Q ss_pred hhh--cCCCCCcEEecccccccCCcchHHhccC-----cccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCC
Q 003265 535 EEL--KKLVNLKCLNLRWAYRLNKIPRQLISNY-----SRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYL 607 (835)
Q Consensus 535 ~~i--~~L~~L~~L~L~~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 607 (835)
..+ ..+++|++|++++| .+..+|.. ++.+ ++|++|++++|.+... ....++.+++|
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L 175 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF---------------SCEQVRVFPAL 175 (312)
T ss_dssp CCSSSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC---------------CTTTCCCCSSC
T ss_pred HHHHHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccc---------------hHHHhccCCCC
Confidence 654 66667777777666 45555543 5555 6667777766665431 11234556666
Q ss_pred CeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccc--cccccchhcccccC
Q 003265 608 EVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELE--ELKIDYAEIVRKRR 685 (835)
Q Consensus 608 ~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~ 685 (835)
+.|+++.|.......++.. ..+..+++|++|++++|.... .+.....
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~------- 224 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISA------------------------LCPLKFPTLQVLALRNAGMETPSGVCSALA------- 224 (312)
T ss_dssp CEEECCSCTTCHHHHHHHH------------------------SCTTSCTTCCEEECTTSCCCCHHHHHHHHH-------
T ss_pred CEEECCCCCcCcchHHHHH------------------------HHhccCCCCCEEECCCCcCcchHHHHHHHH-------
Confidence 6666655542211111000 112445566666666553221 1101111
Q ss_pred CcccCCCccEEeEecCCCCCCC---chhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCc
Q 003265 686 EPFVFRSLHLVAIYECHKLKDL---TFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPI 762 (835)
Q Consensus 686 ~~~~~~~L~~L~L~~c~~l~~l---~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 762 (835)
..+++|+.|+|++| .+... +.+..+++|++|+|++|. ++.++. .+. ++|++|+++++ +
T Consensus 225 --~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~--~~L~~L~Ls~N-~ 285 (312)
T 1wwl_A 225 --AARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK------------GLP--AKLSVLDLSYN-R 285 (312)
T ss_dssp --HTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS------------SCC--SEEEEEECCSS-C
T ss_pred --hcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh------------hcc--CCceEEECCCC-C
Confidence 13566777777766 34432 234456777777777654 334433 222 67777777764 4
Q ss_pred cccccCCCCCCCCccEEEEe
Q 003265 763 LKSIYWKPLPFTHLKEMAVT 782 (835)
Q Consensus 763 l~~l~~~~~~~~~L~~L~i~ 782 (835)
++.++. ...+++|+.|+++
T Consensus 286 l~~~p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 286 LDRNPS-PDELPQVGNLSLK 304 (312)
T ss_dssp CCSCCC-TTTSCEEEEEECT
T ss_pred CCCChh-HhhCCCCCEEecc
Confidence 566654 5566777777776
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=3e-17 Score=173.58 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=99.5
Q ss_pred eEEEEeeeCCccccCCCCCCCcceEEEeccCCcc--cccchhh------cCCCcceEEEeecCCCCcccc-ccCchH--h
Q 003265 446 VRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQEL--KIADGFF------QFMPSLKVLKMSYCGQSWSSF-QLPVGM--S 514 (835)
Q Consensus 446 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~--~~~~~~~------~~l~~Lr~L~Ls~~~~~~~i~-~lp~~i--~ 514 (835)
++.+.+.+|.+ .+|.. -...|+.|++++|... .++...+ .++++|++|+|++| .+. .+|..+ +
T Consensus 45 L~~l~l~~n~l-~~p~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQ-FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL----EVTGTAPPPLLEA 118 (312)
T ss_dssp CTTHHHHCCTT-CCCHH-HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE----BCBSCCCCCSSSC
T ss_pred ceeEeeccccc-ccHHH-HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC----cccchhHHHHHHh
Confidence 44444455555 33331 0112777777765542 3444321 26788888888888 665 567665 6
Q ss_pred hhhhcccEEeeccccccccchhhcCC-----CCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCccc
Q 003265 515 ELGSSLQLFDISLTLIKELPEELKKL-----VNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSV 589 (835)
Q Consensus 515 ~l~~~L~~L~L~~~~i~~Lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 589 (835)
.+. +|++|+|++|.++.+|..++.+ ++|++|++++| .+..++...++++++|++|++++|.+..
T Consensus 119 ~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------- 187 (312)
T 1wwl_A 119 TGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG--------- 187 (312)
T ss_dssp CSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH---------
T ss_pred cCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc---------
Confidence 777 8888888888888777777776 78888888888 5677764448888888888888776542
Q ss_pred ccCCcccchHhh--cCCCCCCeEEEEecchhhH
Q 003265 590 LFGGGEVLVQEL--LGLKYLEVLELTLGSYHAL 620 (835)
Q Consensus 590 ~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~l 620 (835)
....+..+ ..+++|+.|+++.+....+
T Consensus 188 ----~~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 216 (312)
T 1wwl_A 188 ----ERGLISALCPLKFPTLQVLALRNAGMETP 216 (312)
T ss_dssp ----HHHHHHHSCTTSCTTCCEEECTTSCCCCH
T ss_pred ----chHHHHHHHhccCCCCCEEECCCCcCcch
Confidence 11123333 6677777777776665533
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=2.9e-17 Score=184.57 Aligned_cols=234 Identities=18% Similarity=0.141 Sum_probs=173.4
Q ss_pred CCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcc
Q 003265 443 WENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSL 520 (835)
Q Consensus 443 ~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L 520 (835)
+.+++.|++++|.+..++. ...+++|++|++++|.....++ |..+++|++|+|++| .+..+|.. . +|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N----~l~~l~~~----~-~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN----YVQELLVG----P-SI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS----EEEEEEEC----T-TC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC----cCCCCCCC----C-Cc
Confidence 3489999999999988763 4899999999999776545554 899999999999999 88888754 5 99
Q ss_pred cEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHh
Q 003265 521 QLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQE 600 (835)
Q Consensus 521 ~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (835)
++|++++|.+..+|.. .+++|++|++++| .+..+++..++.+++|++|++++|.+.. ..+..
T Consensus 102 ~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------------~~~~~ 163 (487)
T 3oja_A 102 ETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT---------------VNFAE 163 (487)
T ss_dssp CEEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE---------------EEGGG
T ss_pred CEEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC---------------cChHH
Confidence 9999999999998754 5789999999999 6777755448999999999999998763 12333
Q ss_pred hc-CCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchh
Q 003265 601 LL-GLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAE 679 (835)
Q Consensus 601 l~-~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~ 679 (835)
+. .+++|+.|+++.|....+ + ....+++|+.|++++|. +..+++. +
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~---------------------------~---~~~~l~~L~~L~Ls~N~-l~~~~~~-~- 210 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDV---------------------------K---GQVVFAKLKTLDLSSNK-LAFMGPE-F- 210 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEE---------------------------E---CCCCCTTCCEEECCSSC-CCEECGG-G-
T ss_pred HhhhCCcccEEecCCCccccc---------------------------c---ccccCCCCCEEECCCCC-CCCCCHh-H-
Confidence 43 566676666664432211 1 22346788888888764 3333333 2
Q ss_pred cccccCCcccCCCccEEeEecCCCCCCCc-hhhccCCccEEeeecCccc-hhhcccCccCCCcccccCCCCCCcccEeec
Q 003265 680 IVRKRREPFVFRSLHLVAIYECHKLKDLT-FLVFAPSLKSLSLYGCNAM-EEIISVGKFDETPEVMGHISPFGNLQTLDL 757 (835)
Q Consensus 680 ~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 757 (835)
..+++|+.|+|++| .+..+| .+..+++|+.|++++|... ..++. .+..+++|+.|.+
T Consensus 211 --------~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~------------~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 --------QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAK 269 (487)
T ss_dssp --------GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHH------------HHTTCHHHHHHHH
T ss_pred --------cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHH------------HHHhCCCCcEEec
Confidence 24788999999888 566666 5778889999999988665 23332 4566778887777
Q ss_pred CC
Q 003265 758 SR 759 (835)
Q Consensus 758 ~~ 759 (835)
..
T Consensus 270 ~~ 271 (487)
T 3oja_A 270 QT 271 (487)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=5.3e-17 Score=188.53 Aligned_cols=199 Identities=15% Similarity=0.021 Sum_probs=110.5
Q ss_pred CceEEEEeeeCCccccC-----C-CCCCCcceEEEeccCCccc----ccchhhcCCCcceEEEeecCCCCccccccCchH
Q 003265 444 ENVRRLSLMQNQIETLS-----E-VPKCPHLLTLFLDFNQELK----IADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM 513 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~l~-----~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i 513 (835)
.+++.|++.+|.+.... . ...+++|++|++++|.... .....+.++++|+.|+|++| .+..+|..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~----~~~~l~~~~ 239 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF----EILELVGFF 239 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC----BGGGGHHHH
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc----cHHHHHHHH
Confidence 46666666666543221 1 1356667777766544321 11223456667777777776 666666666
Q ss_pred hhhhhcccEEeeccccc----cccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCccc
Q 003265 514 SELGSSLQLFDISLTLI----KELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSV 589 (835)
Q Consensus 514 ~~l~~~L~~L~L~~~~i----~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 589 (835)
..+. +|++|+++++.. ...+..+..+++|+.|+++++ ....+|.. +..+++|++|++++|.+..
T Consensus 240 ~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~--------- 307 (592)
T 3ogk_B 240 KAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET--------- 307 (592)
T ss_dssp HHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH---------
T ss_pred hhhh-HHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH---------
Confidence 6665 777777664311 233445556666666666665 34556664 7778888888888877432
Q ss_pred ccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCC----------CCCCCcccccccccccccc
Q 003265 590 LFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPL----------AGDATSIIDATAFADLNHL 659 (835)
Q Consensus 590 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~l~~~~~L 659 (835)
......+..+++|+.|++. +.... ..+......+++|+.|++.+ |+..+..........+++|
T Consensus 308 -----~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 308 -----EDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp -----HHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred -----HHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 1222335677888888887 22211 11111122345688888874 4443322211223446777
Q ss_pred cceecc
Q 003265 660 NELGID 665 (835)
Q Consensus 660 ~~L~l~ 665 (835)
++|++.
T Consensus 381 ~~L~l~ 386 (592)
T 3ogk_B 381 EYMAVY 386 (592)
T ss_dssp SEEEEE
T ss_pred eEEEee
Confidence 777773
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=4.6e-16 Score=162.35 Aligned_cols=216 Identities=23% Similarity=0.294 Sum_probs=163.6
Q ss_pred EEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 427 LVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
+...+.++..+|. ..+.++++|++.+|.+..++. ...+++|++|++++|....+++..|.++++|++|+|++|
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---- 90 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN---- 90 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC----
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC----
Confidence 4445556666664 335789999999999998864 488999999999977655776667999999999999999
Q ss_pred c-cccc-CchHhhhhhcccEEeecccccccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCc
Q 003265 505 S-SFQL-PVGMSELGSSLQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNF 581 (835)
Q Consensus 505 ~-i~~l-p~~i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 581 (835)
. +..+ |..+..+. +|++|++++|.++.+ |..+..+++|++|++++| .+..+|...++++++|++|++++|.+...
T Consensus 91 ~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 91 AQLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCccccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccccc
Confidence 5 7777 66788888 999999999999988 567899999999999999 68888876689999999999999977642
Q ss_pred ccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccc
Q 003265 582 HEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNE 661 (835)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~ 661 (835)
. ...+..+++|+.|+++.+.... ..+ ..+..+++|+.
T Consensus 169 ~---------------~~~~~~l~~L~~L~l~~n~l~~--------------------------~~~--~~~~~l~~L~~ 205 (285)
T 1ozn_A 169 P---------------ERAFRGLHSLDRLLLHQNRVAH--------------------------VHP--HAFRDLGRLMT 205 (285)
T ss_dssp C---------------TTTTTTCTTCCEEECCSSCCCE--------------------------ECT--TTTTTCTTCCE
T ss_pred C---------------HHHhcCccccCEEECCCCcccc--------------------------cCH--hHccCcccccE
Confidence 1 1225667777777776554321 111 25566778888
Q ss_pred eecccccccccccccchhcccccCCcccCCCccEEeEecCC
Q 003265 662 LGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECH 702 (835)
Q Consensus 662 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 702 (835)
|++++|. +..+.+..+. .+++|+.|+|++|+
T Consensus 206 L~l~~n~-l~~~~~~~~~---------~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 206 LYLFANN-LSALPTEALA---------PLRALQYLRLNDNP 236 (285)
T ss_dssp EECCSSC-CSCCCHHHHT---------TCTTCCEEECCSSC
T ss_pred eeCCCCc-CCcCCHHHcc---------cCcccCEEeccCCC
Confidence 8887764 3333333332 47888888888875
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=4.2e-16 Score=164.26 Aligned_cols=192 Identities=18% Similarity=0.208 Sum_probs=126.8
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVN 542 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~ 542 (835)
..+++|++|++++|....++. +..+++|++|+|++| .+..++. +..+. +|++|+|++|.++.+| .+..+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n----~i~~~~~-~~~l~-~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN----QITDLAP-LKNLT-KITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS----CCCCCGG-GTTCC-SCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC----cCCCChh-HccCC-CCCEEEccCCcCCCch-hhcCCCC
Confidence 456777778877664435542 677777888888877 6777766 77776 7888888877777775 5777777
Q ss_pred CcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHH
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQI 622 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 622 (835)
|++|++++| .+..+|. +..+++|++|++++|.+.. +..+..+++|+.|+++.+..
T Consensus 109 L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~~n~l----- 163 (308)
T 1h6u_A 109 IKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITN-----------------ISPLAGLTNLQYLSIGNAQV----- 163 (308)
T ss_dssp CCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGGGCTTCCEEECCSSCC-----
T ss_pred CCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCc-----------------CccccCCCCccEEEccCCcC-----
Confidence 888888777 5666665 7777777777777776552 11144555555555543322
Q ss_pred HhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCC
Q 003265 623 LLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECH 702 (835)
Q Consensus 623 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 702 (835)
. ..+ .+..+++|+.|++++|.. ..+.. . ..+++|+.|+|++|
T Consensus 164 ---------------------~-~~~---~l~~l~~L~~L~l~~n~l-~~~~~--l---------~~l~~L~~L~L~~N- 205 (308)
T 1h6u_A 164 ---------------------S-DLT---PLANLSKLTTLKADDNKI-SDISP--L---------ASLPNLIEVHLKNN- 205 (308)
T ss_dssp ---------------------C-CCG---GGTTCTTCCEEECCSSCC-CCCGG--G---------GGCTTCCEEECTTS-
T ss_pred ---------------------C-CCh---hhcCCCCCCEEECCCCcc-CcChh--h---------cCCCCCCEEEccCC-
Confidence 1 122 255667778888876643 32221 2 24778888888887
Q ss_pred CCCCCchhhccCCccEEeeecCcc
Q 003265 703 KLKDLTFLVFAPSLKSLSLYGCNA 726 (835)
Q Consensus 703 ~l~~l~~l~~l~~L~~L~L~~~~~ 726 (835)
.+..++.+..+++|+.|++++|..
T Consensus 206 ~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 206 QISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred ccCccccccCCCCCCEEEccCCee
Confidence 566666677888888888887653
No 73
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=2e-15 Score=162.66 Aligned_cols=289 Identities=13% Similarity=0.065 Sum_probs=178.2
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc------CHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL------RLEKLQEDIG 169 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~~~~~~i~ 169 (835)
.|+||++++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+.+.... +...+...+.
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHHH
Confidence 7999999999999998764 799999999999999999999875 1 6788775543 5566666666
Q ss_pred HHhCCC----------------CCCCCCCCHHHHHHHHHHHhcC-CcEEEEEcccCCccc---------ccccccCCCCC
Q 003265 170 KKIGLV----------------GDSWKSRSAEEKALDIFRSLRG-KRIVLLLDDIWERVD---------LTKVGVPLPGP 223 (835)
Q Consensus 170 ~~l~~~----------------~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~l~~~l~~~ 223 (835)
+.+... ..+....+.......+.+..+. ++++|||||++.... +..+.... +
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~--~ 160 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY--D 160 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH--H
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH--H
Confidence 655320 0000123455666666665542 499999999965332 12222211 1
Q ss_pred CCCCcEEEEEccchhh-hhc---------c--CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCC
Q 003265 224 QNTTSKVVFTTRFIDV-CGS---------M--EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVG 291 (835)
Q Consensus 224 ~~~~s~IivTtR~~~v-~~~---------~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 291 (835)
...+.++|+|++.... ... . .....+.+.+|+.+|+.+++.+.+.......+ .+.+..|++.|+|
T Consensus 161 ~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG 237 (350)
T 2qen_A 161 SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDG 237 (350)
T ss_dssp HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTT
T ss_pred hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCC
Confidence 2246789999886543 110 1 11247899999999999999886543221112 3567889999999
Q ss_pred cchHHHHHHHHHhcCccHHHHHhhhCCCcchhhHHHHHHhcC---CCchhhHHHhhhccCCCCccccHHHHHHHHHhcCC
Q 003265 292 LPLALITIGRAMAYRKKAEQWRQFAGLGKEVYPLLKFSYDSL---QNDTIRSCFLYCCLYSEDYGILKWDLIDCWIGEGF 368 (835)
Q Consensus 292 lPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~l~~sy~~L---~~~~~k~cf~~~~~fp~~~~i~~~~li~~W~a~g~ 368 (835)
+|+++..++..+....+...+.. ...+.+...+.-.+..+ ++ ..+..+..+|. . .++...+.....+. .
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g---~~~~~~l~~~~~~~-~ 309 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMK--RTLEVAKGLIMGELEELRRRSP-RYVDILRAIAL-G---YNRWSLIRDYLAVK-G 309 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T---CCSHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHhccccHhHHHH--HHHHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C---CCCHHHHHHHHHHH-h
Confidence 99999999876533222222211 11111111222222223 55 78888888887 2 13444444432211 0
Q ss_pred ccCCcccchHhhHHHHHHHHHHhcccccccccccchhHHHHHHH
Q 003265 369 LGESDRFGAENQGYDILDTLVRACLLEEVEDDKVKMHDVIRDMA 412 (835)
Q Consensus 369 i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~mhdlv~~~a 412 (835)
+ .........+++.|.+.+++...+..+...|.+++++.
T Consensus 310 ----~-~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 310 ----T-KIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp ----C-CCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred ----C-CCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 0 11235567889999999999875333334577777664
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=1.8e-17 Score=186.02 Aligned_cols=339 Identities=16% Similarity=0.102 Sum_probs=173.9
Q ss_pred ceEEEEeeeCCccccCC---CCCCCcceEEEeccCCccc----ccchhhcCCCcceEEEeecCCCCccccc-cCchHhhh
Q 003265 445 NVRRLSLMQNQIETLSE---VPKCPHLLTLFLDFNQELK----IADGFFQFMPSLKVLKMSYCGQSWSSFQ-LPVGMSEL 516 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~-lp~~i~~l 516 (835)
++++|+++++.+..... ...+++|++|++++|.... .....+..+++|++|+|++| .+.. .+..+...
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n----~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN----ELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC----CCHHHHHHHHHHT
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC----cCChHHHHHHHHH
Confidence 56777777776654321 2567777888887665331 11234667777888888877 5543 22233332
Q ss_pred hh----cccEEeecccccc-----ccchhhcCCCCCcEEecccccccCCc-----chHHhccCcccceeeecCcCccCcc
Q 003265 517 GS----SLQLFDISLTLIK-----ELPEELKKLVNLKCLNLRWAYRLNKI-----PRQLISNYSRLCVLRMFGTGWFNFH 582 (835)
Q Consensus 517 ~~----~L~~L~L~~~~i~-----~Lp~~i~~L~~L~~L~L~~~~~l~~l-----p~~~i~~L~~L~~L~l~~~~~~~~~ 582 (835)
.+ +|++|+|++|.++ .+|..+..+++|++|++++|. +... .......+++|++|++++|.+....
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 21 4778888877766 457777777788888887773 4321 1111223456788888777655311
Q ss_pred cCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhH--HHHhhccc-ccccceeeecCCCCCCCcc--cccccccccc
Q 003265 583 EAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHAL--QILLSSNR-LKSCIRSLFLPLAGDATSI--IDATAFADLN 657 (835)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l--~~l~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~l~~~~ 657 (835)
. ......+..+++|+.|+++.+..... ..+..... ..++|+.|++++|...... .....+..++
T Consensus 159 ~-----------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 159 C-----------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp H-----------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred H-----------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 0 11234455667777777776654332 11111110 1236777777776543211 0112445567
Q ss_pred cccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCC-----Cc-hhhccCCccEEeeecCccchhhc
Q 003265 658 HLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKD-----LT-FLVFAPSLKSLSLYGCNAMEEII 731 (835)
Q Consensus 658 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~~l~~~~ 731 (835)
+|++|++++|. +.......+.. .....+++|+.|++++| .+.. ++ .+..+++|++|+|++|......+
T Consensus 228 ~L~~L~Ls~n~-l~~~~~~~l~~----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 228 SLRELALGSNK-LGDVGMAELCP----GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp TCCEEECCSSB-CHHHHHHHHHH----HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred CccEEeccCCc-CChHHHHHHHH----HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 77777777653 22111111110 00012566666666666 4443 22 24456666666666654321110
Q ss_pred cc---C---ccCCCc---------------ccccCCCCCCcccEeecCCCCccccccCC-----C-CCCCCccEEEEecC
Q 003265 732 SV---G---KFDETP---------------EVMGHISPFGNLQTLDLSRLPILKSIYWK-----P-LPFTHLKEMAVTHG 784 (835)
Q Consensus 732 ~~---~---~~~~~~---------------~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-----~-~~~~~L~~L~i~~~ 784 (835)
.. . .....+ .+...+..+++|+.|+|+++ .+...... . ...++|+.|+++ +
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~-~ 379 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLA-D 379 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECT-T
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECC-C
Confidence 00 0 000000 00112334577777777775 33332110 0 125688888888 6
Q ss_pred CCcCC-----CCCCCCCcc-cccceEEech
Q 003265 785 CNQLR-----KLPLDSNSA-KERKFVIRGR 808 (835)
Q Consensus 785 C~~L~-----~lp~~~~~~-~l~~~~i~~~ 808 (835)
| +++ .+|...... .|+.+.+.++
T Consensus 380 n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 380 C-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp S-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred C-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 6 555 455433222 5677777654
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=2.3e-17 Score=185.26 Aligned_cols=313 Identities=15% Similarity=0.089 Sum_probs=189.3
Q ss_pred CCceEEEEeeeCCccccC--CC-CCCC----cceEEEeccCCccc----ccchhhcCCCcceEEEeecCCCCcccccc-C
Q 003265 443 WENVRRLSLMQNQIETLS--EV-PKCP----HLLTLFLDFNQELK----IADGFFQFMPSLKVLKMSYCGQSWSSFQL-P 510 (835)
Q Consensus 443 ~~~~r~l~l~~~~~~~l~--~~-~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p 510 (835)
..+++.|++++|.+.... .. ..++ +|++|++++|.... .....+..+++|++|+|++| .+... +
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n----~i~~~~~ 130 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN----LLGDAGL 130 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS----BCHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC----cCchHHH
Confidence 357777887777665421 11 1222 67888887665332 22344677778888888887 55432 2
Q ss_pred chHhh-----hhhcccEEeeccccccc-----cchhhcCCCCCcEEecccccccCCcchHHhc-----cCcccceeeecC
Q 003265 511 VGMSE-----LGSSLQLFDISLTLIKE-----LPEELKKLVNLKCLNLRWAYRLNKIPRQLIS-----NYSRLCVLRMFG 575 (835)
Q Consensus 511 ~~i~~-----l~~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~-----~L~~L~~L~l~~ 575 (835)
..+.. .. +|++|++++|.++. ++..+..+++|++|++++|. +.......+. .+++|++|++++
T Consensus 131 ~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 131 QLLCEGLLDPQC-RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHTSTTC-CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHhcCCC-cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 22222 22 58888888887664 45666777888888888773 4332211122 356788888887
Q ss_pred cCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhH--HHHhhc-ccccccceeeecCCCCCCCccc--cc
Q 003265 576 TGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHAL--QILLSS-NRLKSCIRSLFLPLAGDATSII--DA 650 (835)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l--~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~ 650 (835)
|.+...+. ......+..+++|+.|+++.+..... ..+... ....++|+.|++++|....... ..
T Consensus 209 n~l~~~~~-----------~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 209 CGVTSDNC-----------RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp SCCBTTHH-----------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCcHHHH-----------HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 76653110 11345577889999999998875442 122111 1124689999999985443210 11
Q ss_pred ccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCC-----c-hhhccCCccEEeeecC
Q 003265 651 TAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDL-----T-FLVFAPSLKSLSLYGC 724 (835)
Q Consensus 651 ~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~~ 724 (835)
..+..+++|++|++++|.. ....+..+.. ... ...++|+.|+|++|. +... + .+..+++|++|+|++|
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~--~l~--~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNEL-GDEGARLLCE--TLL--EPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHCTTCCEEECTTCCC-HHHHHHHHHH--HHT--STTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHhhCCCcceEECCCCCC-chHHHHHHHH--Hhc--cCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC
Confidence 3566789999999998753 3222222210 000 124699999999994 5543 2 4667899999999998
Q ss_pred ccchhhcccCccCCCcccccCCC-CCCcccEeecCCCCccc-----cccCCCCCCCCccEEEEecCCCcCC
Q 003265 725 NAMEEIISVGKFDETPEVMGHIS-PFGNLQTLDLSRLPILK-----SIYWKPLPFTHLKEMAVTHGCNQLR 789 (835)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~i~~~C~~L~ 789 (835)
......+. .+...+. ..++|++|++++|. ++ .++.....+++|+.|+++ +| .++
T Consensus 352 ~i~~~~~~--------~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~-~N-~i~ 411 (461)
T 1z7x_W 352 RLEDAGVR--------ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLS-NN-CLG 411 (461)
T ss_dssp BCHHHHHH--------HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECC-SS-SCC
T ss_pred ccccccHH--------HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECC-CC-CCC
Confidence 54332221 0001111 26899999999974 44 455444568999999999 76 454
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=6.3e-16 Score=156.67 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=49.3
Q ss_pred cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcc-ccccCc-hHhhhhhcccEEeecc-ccccccch-hhcCCCC
Q 003265 467 HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWS-SFQLPV-GMSELGSSLQLFDISL-TLIKELPE-ELKKLVN 542 (835)
Q Consensus 467 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~-i~~lp~-~i~~l~~~L~~L~L~~-~~i~~Lp~-~i~~L~~ 542 (835)
+|+.|++++|....++...|.++++|++|++++| . ++.+|. .+..+. +|++|++++ |.++.+|. .+..+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n----~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID----VTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC----SSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCC----CCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 4555555544333444444555555555555555 3 444443 334444 555555554 45555542 3445555
Q ss_pred CcEEecccccccCCcchHHhccCcccc---eeeecCc
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLC---VLRMFGT 576 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~---~L~l~~~ 576 (835)
|++|++++| .+..+|. +..+++|+ +|++++|
T Consensus 107 L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 107 LKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp CCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred CCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 555555555 3444443 44444444 4444443
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.7e-16 Score=170.05 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=144.0
Q ss_pred ceEEEeccCCcccccchhhcCC--CcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccc--cchhhcCCCCC
Q 003265 468 LLTLFLDFNQELKIADGFFQFM--PSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKE--LPEELKKLVNL 543 (835)
Q Consensus 468 L~~L~l~~~~~~~~~~~~~~~l--~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~--Lp~~i~~L~~L 543 (835)
++.++++++.. .+..+..+ +++++|++++| .+...+..++.+. +|++|++++|.+.. +|..+..+++|
T Consensus 49 ~~~l~l~~~~~---~~~~~~~~~~~~l~~L~l~~n----~l~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 49 WQTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRS----FMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp SSEEECTTCBC---CHHHHHHHHHTTCSEEECTTC----EECSCCCSCCCCB-CCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred heeeccccccC---CHHHHHhhhhccceEEEcCCc----cccccchhhccCC-CCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 45556654432 23335555 67888888887 6666666667776 88888888887653 67777778888
Q ss_pred cEEecccccccC-CcchHHhccCcccceeeecCcC-ccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEec-chhhH
Q 003265 544 KCLNLRWAYRLN-KIPRQLISNYSRLCVLRMFGTG-WFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLG-SYHAL 620 (835)
Q Consensus 544 ~~L~L~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~l 620 (835)
++|++++| .+. ..|.. +..+++|++|++++|. +.. ......+..+++|+.|+++.+ ..+..
T Consensus 121 ~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~--------------~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 121 QNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFSE--------------FALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp SEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSCCH--------------HHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred CEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCCCCH--------------HHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 88888887 344 34444 7778888888888773 321 112233455566666655544 22210
Q ss_pred HHHhhcccccccceeeecCCCCCCCcccccccccccc-cccceeccccc-cccc-ccccchhcccccCCcccCCCccEEe
Q 003265 621 QILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLN-HLNELGIDRAE-ELEE-LKIDYAEIVRKRREPFVFRSLHLVA 697 (835)
Q Consensus 621 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~l~~-l~~~~~~~~~~~~~~~~~~~L~~L~ 697 (835)
..+ ..+..++ +|++|++++|. .+.+ ..+... ..+++|+.|+
T Consensus 185 -------------------------~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~---------~~~~~L~~L~ 228 (336)
T 2ast_B 185 -------------------------HVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLV---------RRCPNLVHLD 228 (336)
T ss_dssp -------------------------HHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH---------HHCTTCSEEE
T ss_pred -------------------------HHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHH---------hhCCCCCEEe
Confidence 011 2344556 77777777664 2321 111122 2477788888
Q ss_pred EecCCCCCC--CchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCC-CCC-
Q 003265 698 IYECHKLKD--LTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKP-LPF- 773 (835)
Q Consensus 698 L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~- 773 (835)
|++|..+.+ ++.+..+++|++|+|++|..+.... ...+..+++|+.|++++| ++... ..+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----------~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~ 292 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-----------LLELGEIPTLKTLQVFGI-----VPDGTLQLLK 292 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-----------GGGGGGCTTCCEEECTTS-----SCTTCHHHHH
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-----------HHHHhcCCCCCEEeccCc-----cCHHHHHHHH
Confidence 888754443 3456777888888888875332210 013556788888888876 22211 112
Q ss_pred CCccEEEEecCCCcCCCCC
Q 003265 774 THLKEMAVTHGCNQLRKLP 792 (835)
Q Consensus 774 ~~L~~L~i~~~C~~L~~lp 792 (835)
.+|..|+++ |++++...
T Consensus 293 ~~l~~L~l~--~n~l~~~~ 309 (336)
T 2ast_B 293 EALPHLQIN--CSHFTTIA 309 (336)
T ss_dssp HHSTTSEES--CCCSCCTT
T ss_pred hhCcceEEe--cccCcccc
Confidence 235556675 67777543
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=7.2e-16 Score=162.42 Aligned_cols=196 Identities=18% Similarity=0.233 Sum_probs=151.1
Q ss_pred ccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcc
Q 003265 441 KRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSL 520 (835)
Q Consensus 441 ~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L 520 (835)
..+.++++|++.++.+..++....+++|++|++++|....++. +..+++|++|+|++| .+..+| .++.+. +|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n----~l~~~~-~~~~l~-~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN----PLKNVS-AIAGLQ-SI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC----CCSCCG-GGTTCT-TC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC----cCCCch-hhcCCC-CC
Confidence 3456899999999999998878899999999999776556666 899999999999999 788776 688898 99
Q ss_pred cEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHh
Q 003265 521 QLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQE 600 (835)
Q Consensus 521 ~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (835)
++|++++|.++.+|. +..+++|++|++++| .+..++. +..+++|++|++++|.+.. +..
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~ 168 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD-----------------LTP 168 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGG
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC-----------------Chh
Confidence 999999999999875 899999999999999 7888887 8999999999999997763 122
Q ss_pred hcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhc
Q 003265 601 LLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEI 680 (835)
Q Consensus 601 l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 680 (835)
+..+++|+.|+++.+....+. .+..+++|+.|++++|.... +.+ +
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~------------------------------~l~~l~~L~~L~L~~N~l~~-~~~--l-- 213 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDIS------------------------------PLASLPNLIEVHLKNNQISD-VSP--L-- 213 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCG------------------------------GGGGCTTCCEEECTTSCCCB-CGG--G--
T ss_pred hcCCCCCCEEECCCCccCcCh------------------------------hhcCCCCCCEEEccCCccCc-ccc--c--
Confidence 667777877777655433221 24455667777776654322 211 1
Q ss_pred ccccCCcccCCCccEEeEecCCCCCCCc
Q 003265 681 VRKRREPFVFRSLHLVAIYECHKLKDLT 708 (835)
Q Consensus 681 ~~~~~~~~~~~~L~~L~L~~c~~l~~l~ 708 (835)
..+++|+.|+|++|+ +...+
T Consensus 214 -------~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 214 -------ANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp -------TTCTTCCEEEEEEEE-EECCC
T ss_pred -------cCCCCCCEEEccCCe-eecCC
Confidence 246777777777773 44433
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=3.1e-16 Score=167.96 Aligned_cols=241 Identities=17% Similarity=0.148 Sum_probs=169.4
Q ss_pred CcceEEEeecCCCCccccccCchHhhh--hhcccEEeeccccccccchhhcCCCCCcEEecccccccCC--cchHHhccC
Q 003265 490 PSLKVLKMSYCGQSWSSFQLPVGMSEL--GSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNK--IPRQLISNY 565 (835)
Q Consensus 490 ~~Lr~L~Ls~~~~~~~i~~lp~~i~~l--~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L 565 (835)
..++.|+++++ .+. |..++.+ . +|++|++++|.+...+..+..+++|++|++++|. +.. +|.. +.++
T Consensus 47 ~~~~~l~l~~~----~~~--~~~~~~~~~~-~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~-~~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGK----NLH--PDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGI-LSQC 117 (336)
T ss_dssp TTSSEEECTTC----BCC--HHHHHHHHHT-TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHH-HTTB
T ss_pred hhheeeccccc----cCC--HHHHHhhhhc-cceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHH-HhhC
Confidence 35889999998 555 5566776 6 9999999999998887778899999999999994 543 5654 8899
Q ss_pred cccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCC
Q 003265 566 SRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDAT 645 (835)
Q Consensus 566 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~ 645 (835)
++|++|++++|.+. ...+..+..+++|+.|+++.+ ...+
T Consensus 118 ~~L~~L~L~~~~l~---------------~~~~~~l~~~~~L~~L~L~~~--------------------------~~l~ 156 (336)
T 2ast_B 118 SKLQNLSLEGLRLS---------------DPIVNTLAKNSNLVRLNLSGC--------------------------SGFS 156 (336)
T ss_dssp CCCSEEECTTCBCC---------------HHHHHHHTTCTTCSEEECTTC--------------------------BSCC
T ss_pred CCCCEEeCcCcccC---------------HHHHHHHhcCCCCCEEECCCC--------------------------CCCC
Confidence 99999999988654 224555666777777766544 1111
Q ss_pred cccccccccccccccceeccccccccccc-ccchhcccccCCcccCC-CccEEeEecCC-CCC--CCc-hhhccCCccEE
Q 003265 646 SIIDATAFADLNHLNELGIDRAEELEELK-IDYAEIVRKRREPFVFR-SLHLVAIYECH-KLK--DLT-FLVFAPSLKSL 719 (835)
Q Consensus 646 ~~~~~~~l~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~~~-~L~~L~L~~c~-~l~--~l~-~l~~l~~L~~L 719 (835)
.......+..+++|++|++++|..+.... +... ..++ +|+.|+|++|. .+. .++ .+..+++|++|
T Consensus 157 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---------~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH---------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH---------HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 11011245677899999999885555321 2222 2588 99999999995 343 234 46789999999
Q ss_pred eeecCccchh-hcccCccCCCcccccCCCCCCcccEeecCCCCccccccC-CCCCCCCccEEEEecCCCcCCCCCCCCC-
Q 003265 720 SLYGCNAMEE-IISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYW-KPLPFTHLKEMAVTHGCNQLRKLPLDSN- 796 (835)
Q Consensus 720 ~L~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~i~~~C~~L~~lp~~~~- 796 (835)
+|++|..+++ .+. .+..+++|+.|++++|..+..... ....+++|+.|+++ +| +|....
T Consensus 228 ~l~~~~~l~~~~~~------------~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~-~~-----i~~~~~~ 289 (336)
T 2ast_B 228 DLSDSVMLKNDCFQ------------EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-GI-----VPDGTLQ 289 (336)
T ss_dssp ECTTCTTCCGGGGG------------GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT-TS-----SCTTCHH
T ss_pred eCCCCCcCCHHHHH------------HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc-Cc-----cCHHHHH
Confidence 9999975543 322 567789999999999874433211 24568999999999 88 444322
Q ss_pred cc--cccceEEec
Q 003265 797 SA--KERKFVIRG 807 (835)
Q Consensus 797 ~~--~l~~~~i~~ 807 (835)
.. .+..+.+.+
T Consensus 290 ~l~~~l~~L~l~~ 302 (336)
T 2ast_B 290 LLKEALPHLQINC 302 (336)
T ss_dssp HHHHHSTTSEESC
T ss_pred HHHhhCcceEEec
Confidence 11 366666664
No 80
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=8.5e-15 Score=158.19 Aligned_cols=284 Identities=14% Similarity=0.112 Sum_probs=169.5
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-----cCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-----LRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i~~ 170 (835)
.|+||+++++.|.+ +.. +++.|+|++|+|||||++++++.. .. ..+|+.+... .+...+...+.+
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 79999999999999 765 699999999999999999999886 22 2578887643 234445544444
Q ss_pred HhCC--------------------CCCC--C-----CCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc-----ccccccc
Q 003265 171 KIGL--------------------VGDS--W-----KSRSAEEKALDIFRSLRGKRIVLLLDDIWERV-----DLTKVGV 218 (835)
Q Consensus 171 ~l~~--------------------~~~~--~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~l~~ 218 (835)
.+.. +... . ...........+.+..+ ++++|||||++... ++..+..
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHH
Confidence 3310 0000 0 12234444444443322 49999999995421 2222222
Q ss_pred CCCCCCCCCcEEEEEccchhhhh-c---------cC-C-CceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHH
Q 003265 219 PLPGPQNTTSKVVFTTRFIDVCG-S---------ME-A-DRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVA 286 (835)
Q Consensus 219 ~l~~~~~~~s~IivTtR~~~v~~-~---------~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~ 286 (835)
.+. +...+.++|+|++...... . .. . ...+.+.+|+.+|+.+++.+.+........ . . ..|+
T Consensus 163 ~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~---~-~~i~ 236 (357)
T 2fna_A 163 YAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D---Y-EVVY 236 (357)
T ss_dssp HHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C---H-HHHH
T ss_pred HHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c---H-HHHH
Confidence 121 1224678999998754311 1 11 1 257899999999999999886532111111 1 1 7889
Q ss_pred HHcCCcchHHHHHHHHHhcCccHHHHHhhhCCCcchhhHHHHHHh-------cCCCchhhHHHhhhccCCCCccccHHHH
Q 003265 287 KECVGLPLALITIGRAMAYRKKAEQWRQFAGLGKEVYPLLKFSYD-------SLQNDTIRSCFLYCCLYSEDYGILKWDL 359 (835)
Q Consensus 287 ~~c~GlPlai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~l~~sy~-------~L~~~~~k~cf~~~~~fp~~~~i~~~~l 359 (835)
+.|+|+|+++..++..+....+...|.. ...+.+...+.-.+. .+++ ..+..+..+|. +. +...+
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g~--~~~~l 308 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAIN--QTLEYAKKLILKEFENFLHGREIARK-RYLNIMRTLSK---CG--KWSDV 308 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHH--HHHHHHHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---CB--CHHHH
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHH--HHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHc---CC--CHHHH
Confidence 9999999999999887654333333322 111111111211111 5666 78888888887 21 33333
Q ss_pred HHHHH-hcCCccCCcccchHhhHHHHHHHHHHhcccccccccccc-hhHHHHHH
Q 003265 360 IDCWI-GEGFLGESDRFGAENQGYDILDTLVRACLLEEVEDDKVK-MHDVIRDM 411 (835)
Q Consensus 360 i~~W~-a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~-mhdlv~~~ 411 (835)
....- ..|. .........+++.|.+.+++...+ ..|. .|.+++++
T Consensus 309 ~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 309 KRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred HHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 32110 0110 012345677899999999998764 3444 67888765
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.1e-15 Score=158.52 Aligned_cols=200 Identities=20% Similarity=0.156 Sum_probs=111.8
Q ss_pred CcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEeeccccccccc-hhhcCCCCC
Q 003265 466 PHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDISLTLIKELP-EELKKLVNL 543 (835)
Q Consensus 466 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~L 543 (835)
++|++|++++|....++...|.++++|++|+|++| .+..++. .+..+. +|++|+|++|.++.++ ..+..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC----CCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC----cCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccc
Confidence 45666777655443555545666777777777777 5655544 455665 7777777777666664 456667777
Q ss_pred cEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHH
Q 003265 544 KCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQIL 623 (835)
Q Consensus 544 ~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l 623 (835)
++|++++| .+..++...++++++|++|++++|.+... ..+..+..+++|+.|+++.+....+.
T Consensus 103 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L~~L~Ls~N~l~~~~-- 165 (276)
T 2z62_A 103 QKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNLEHLDLSSNKIQSIY-- 165 (276)
T ss_dssp CEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTCCEEECCSSCCCEEC--
T ss_pred cEEECCCC-CccccCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCCCEEECCCCCCCcCC--
Confidence 77777766 45555543366667777777776655421 11233455555555555544322110
Q ss_pred hhcccccccceeeecCCCCCCCccccccccccccccc----ceecccccccccccccchhcccccCCcccCCCccEEeEe
Q 003265 624 LSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLN----ELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIY 699 (835)
Q Consensus 624 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~ 699 (835)
+ ..+..+.+|+ +|+++++. +..+..... ...+|+.|+|+
T Consensus 166 ------------------------~--~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~----------~~~~L~~L~L~ 208 (276)
T 2z62_A 166 ------------------------C--TDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF----------KEIRLKELALD 208 (276)
T ss_dssp ------------------------G--GGGHHHHTCTTCCEEEECCSSC-CCEECTTSS----------CSCCEEEEECC
T ss_pred ------------------------H--HHhhhhhhccccceeeecCCCc-ccccCcccc----------CCCcccEEECC
Confidence 0 1222333333 55665543 222222221 23467777777
Q ss_pred cCCCCCCCch--hhccCCccEEeeecCc
Q 003265 700 ECHKLKDLTF--LVFAPSLKSLSLYGCN 725 (835)
Q Consensus 700 ~c~~l~~l~~--l~~l~~L~~L~L~~~~ 725 (835)
+| .+..++. +..+++|+.|+|++|+
T Consensus 209 ~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 209 TN-QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CC-ceeecCHhHhcccccccEEEccCCc
Confidence 77 4555552 5667777777777664
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.1e-15 Score=154.77 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=61.3
Q ss_pred cceEEEeecCCCCccccccCc-hHhhhhhcccEEeecccc-ccccch-hhcCCCCCcEEecccccccCCcchHHhccCcc
Q 003265 491 SLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDISLTL-IKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSR 567 (835)
Q Consensus 491 ~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L~~~~-i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~ 567 (835)
+|++|+|++| .++.+|. .+..+. +|++|++++|. ++.+|. .+..+++|++|++++|..+..+|...+.++++
T Consensus 32 ~l~~L~l~~n----~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIET----HLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESC----CCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred cccEEEEeCC----cceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 6788888888 7777765 466676 88888888885 777765 57778888888888733677777655677777
Q ss_pred cceeeecCcCcc
Q 003265 568 LCVLRMFGTGWF 579 (835)
Q Consensus 568 L~~L~l~~~~~~ 579 (835)
|++|++++|.+.
T Consensus 107 L~~L~l~~n~l~ 118 (239)
T 2xwt_C 107 LKFLGIFNTGLK 118 (239)
T ss_dssp CCEEEEEEECCC
T ss_pred CCEEeCCCCCCc
Confidence 777777776654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.2e-15 Score=159.19 Aligned_cols=200 Identities=18% Similarity=0.159 Sum_probs=147.7
Q ss_pred ccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcc
Q 003265 441 KRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSL 520 (835)
Q Consensus 441 ~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L 520 (835)
....+++.+++.++.+..+|... .++++.|++++|....++...|.++++|++|+|++| .+..+|.. +.+. +|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~-~~l~-~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVD-GTLP-VL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS----CCCEEECC-SCCT-TC
T ss_pred cccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC----ccCcccCC-CCCC-cC
Confidence 34557888999988888887542 378999999977655676667899999999999999 78887765 6777 99
Q ss_pred cEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHh
Q 003265 521 QLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQE 600 (835)
Q Consensus 521 ~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (835)
++|+|++|.++.+|..+..+++|++|++++| .+..+|.+.+.++++|++|++++|.+.... ...
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~---------------~~~ 143 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLP---------------PGL 143 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCC---------------TTT
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccC---------------hhh
Confidence 9999999999999999999999999999999 788888766899999999999998876421 122
Q ss_pred hcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhc
Q 003265 601 LLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEI 680 (835)
Q Consensus 601 l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 680 (835)
+..+++|+.|+++.|....+. . ..+..+++|+.|++++|. +..++...
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~--------------------------~--~~~~~l~~L~~L~L~~N~-l~~ip~~~--- 191 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELP--------------------------A--GLLNGLENLDTLLLQENS-LYTIPKGF--- 191 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCC--------------------------T--TTTTTCTTCCEEECCSSC-CCCCCTTT---
T ss_pred cccccCCCEEECCCCcCCccC--------------------------H--HHhcCcCCCCEEECCCCc-CCccChhh---
Confidence 456677777776654332211 1 234566777777777654 33332222
Q ss_pred ccccCCcccCCCccEEeEecCC
Q 003265 681 VRKRREPFVFRSLHLVAIYECH 702 (835)
Q Consensus 681 ~~~~~~~~~~~~L~~L~L~~c~ 702 (835)
..+++|+.|.|++++
T Consensus 192 -------~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 192 -------FGSHLLPFAFLHGNP 206 (290)
T ss_dssp -------TTTCCCSEEECCSCC
T ss_pred -------cccccCCeEEeCCCC
Confidence 235678888887764
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=1.8e-15 Score=156.29 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=60.8
Q ss_pred ceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEeeccccccccchhh-cCCCCCcE
Q 003265 468 LLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDISLTLIKELPEEL-KKLVNLKC 545 (835)
Q Consensus 468 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~Lp~~i-~~L~~L~~ 545 (835)
+++++++++....+|..+ .++|+.|+|++| .+..+|. .+..+. +|++|+|++|.++.+|..+ ..+++|++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n----~l~~~~~~~~~~l~-~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSN----KLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSS----CCSCCCTTSSSSCT-TCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCC----CCCeeCHHHhcCCC-CCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 456666644333555432 145666666666 5555554 455565 6666666666666665543 55666666
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|++++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 90 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 90 LWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp EECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred EECCCC-cCCcCCHhHcccccCCCEEECCCCccC
Confidence 666666 455666554566666666666665544
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.4e-15 Score=163.61 Aligned_cols=237 Identities=16% Similarity=0.123 Sum_probs=147.4
Q ss_pred eEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-HhhhhhcccEEeecccccc-ccch-hhcCCCCCcE
Q 003265 469 LTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQLFDISLTLIK-ELPE-ELKKLVNLKC 545 (835)
Q Consensus 469 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~-~Lp~-~i~~L~~L~~ 545 (835)
++++.++++...+|.++ .++|+.|+|++| .|+.+|.. +..+. +|++|+|++|.+. .+|. .+.++++|+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N----~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT----KLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC----CCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC----cCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 45666644333666553 246777777777 77777754 56676 7777777777753 3543 4566777665
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhh
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLS 625 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~ 625 (835)
+...++..+..+|++.+..+++|++|++++|.+...... ......++..|+
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~---------------~~~~~~~l~~l~-------------- 134 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV---------------HKIHSLQKVLLD-------------- 134 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC---------------TTCCBSSCEEEE--------------
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCch---------------hhcccchhhhhh--------------
Confidence 444433366777665567777777777777665531100 011122233333
Q ss_pred cccccccceeeecCCCCCCCccccccccccc-ccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCC
Q 003265 626 SNRLKSCIRSLFLPLAGDATSIIDATAFADL-NHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKL 704 (835)
Q Consensus 626 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l 704 (835)
+.++.....++. ..+..+ ..++.|+++++. ++.+....+ ...+|++|.+.++..+
T Consensus 135 ------------l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~-i~~i~~~~f----------~~~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 135 ------------IQDNINIHTIER-NSFVGLSFESVILWLNKNG-IQEIHNSAF----------NGTQLDELNLSDNNNL 190 (350)
T ss_dssp ------------EESCTTCCEECT-TSSTTSBSSCEEEECCSSC-CCEECTTSS----------TTEEEEEEECTTCTTC
T ss_pred ------------hccccccccccc-cchhhcchhhhhhcccccc-ccCCChhhc----------cccchhHHhhccCCcc
Confidence 322222222221 122332 467888888654 444433332 2567899999887788
Q ss_pred CCCch--hhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEe
Q 003265 705 KDLTF--LVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVT 782 (835)
Q Consensus 705 ~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~ 782 (835)
+.+|. +..+++|+.|+|++| .++.++. ..|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 191 ~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--------------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 191 EELPNDVFHGASGPVILDISRT-RIHSLPS--------------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CCCCTTTTTTEECCSEEECTTS-CCCCCCS--------------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred cCCCHHHhccCcccchhhcCCC-CcCccCh--------------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 88873 788999999999986 4666643 4578888888888888888884 5678999999886
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.7e-15 Score=155.61 Aligned_cols=217 Identities=22% Similarity=0.198 Sum_probs=156.2
Q ss_pred EEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 427 LVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
+...+..+..+|.. -+.++++|++++|.+..++. ...+++|++|++++|....++...|.++++|++|+|++|
T Consensus 12 ~~c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n---- 86 (276)
T 2z62_A 12 YQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN---- 86 (276)
T ss_dssp EECTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC----
T ss_pred EEecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC----
Confidence 44455556666652 24589999999999988764 478999999999977655777777999999999999999
Q ss_pred cccccC-chHhhhhhcccEEeeccccccccch-hhcCCCCCcEEecccccccCC--cchHHhccCcccceeeecCcCccC
Q 003265 505 SSFQLP-VGMSELGSSLQLFDISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNK--IPRQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 505 ~i~~lp-~~i~~l~~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
.+..++ ..+..+. +|++|++++|.+..++. .++.+++|++|++++| .+.. +|.. +.++++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 87 PIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CCCEECTTTTTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred ccCccChhhhcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCc
Confidence 787776 5678888 99999999999998866 6899999999999999 5665 5775 9999999999999998764
Q ss_pred cccCCCcccccCCcccchHhhcCCCCCC-eEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccc
Q 003265 581 FHEAPEDSVLFGGGEVLVQELLGLKYLE-VLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHL 659 (835)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~-~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L 659 (835)
.. ...+..+..++.|. .|+++.+....+ .+ ......+|
T Consensus 164 ~~------------~~~~~~l~~L~~l~l~L~ls~n~l~~~--------------------------~~---~~~~~~~L 202 (276)
T 2z62_A 164 IY------------CTDLRVLHQMPLLNLSLDLSLNPMNFI--------------------------QP---GAFKEIRL 202 (276)
T ss_dssp EC------------GGGGHHHHTCTTCCEEEECCSSCCCEE--------------------------CT---TSSCSCCE
T ss_pred CC------------HHHhhhhhhccccceeeecCCCccccc--------------------------Cc---cccCCCcc
Confidence 21 12234445555444 455544432211 11 11122367
Q ss_pred cceecccccccccccccchhcccccCCcccCCCccEEeEecCC
Q 003265 660 NELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECH 702 (835)
Q Consensus 660 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 702 (835)
+.|++++|. ++.+....+ ..+++|+.|+|++++
T Consensus 203 ~~L~L~~n~-l~~~~~~~~---------~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 203 KELALDTNQ-LKSVPDGIF---------DRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSSC-CSCCCTTTT---------TTCCSCCEEECCSSC
T ss_pred cEEECCCCc-eeecCHhHh---------cccccccEEEccCCc
Confidence 778887665 333333322 247788888888774
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=2.7e-15 Score=154.97 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=138.0
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhcccEE
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSSLQLF 523 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~L~~L 523 (835)
..+.+++.++.+..+|... .++++.|++++|....++...|.++++|++|+|++| .+..+|..+ ..+. +|++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~i~~~~~~~l~-~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN----KLQTLPAGIFKELK-NLETL 90 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS----CCSCCCTTTTSSCT-TCCEE
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC----ccCeeChhhhcCCC-CCCEE
Confidence 4556777778777776532 367888999866654777766888899999999998 788887765 5677 89999
Q ss_pred eeccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhc
Q 003265 524 DISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELL 602 (835)
Q Consensus 524 ~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 602 (835)
+|++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|.+.... ...+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------~~~~~ 154 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLP---------------KGVFD 154 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTTT
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccC---------------HhHcc
Confidence 9999988888654 578889999999888 677777766788899999999888766421 11255
Q ss_pred CCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhccc
Q 003265 603 GLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVR 682 (835)
Q Consensus 603 ~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 682 (835)
.+++|+.|+++.+.... ..+ ..+..+++|+.|++++|. +..+....+.
T Consensus 155 ~l~~L~~L~L~~n~l~~--------------------------~~~--~~~~~l~~L~~L~L~~N~-l~~~~~~~~~--- 202 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKR--------------------------VPE--GAFDKLTELKTLKLDNNQ-LKRVPEGAFD--- 202 (270)
T ss_dssp TCTTCCEEECCSSCCSC--------------------------CCT--TTTTTCTTCCEEECCSSC-CSCCCTTTTT---
T ss_pred CCcccceeEecCCcCcE--------------------------eCh--hHhccCCCcCEEECCCCc-CCcCCHHHhc---
Confidence 66667766665443221 111 245566777788887663 3333332222
Q ss_pred ccCCcccCCCccEEeEecCC
Q 003265 683 KRREPFVFRSLHLVAIYECH 702 (835)
Q Consensus 683 ~~~~~~~~~~L~~L~L~~c~ 702 (835)
.+++|+.|+|++|+
T Consensus 203 ------~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 203 ------SLEKLKMLQLQENP 216 (270)
T ss_dssp ------TCTTCCEEECCSSC
T ss_pred ------cccCCCEEEecCCC
Confidence 47778888887775
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=6.7e-16 Score=159.70 Aligned_cols=129 Identities=20% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-Hhhhhhccc
Q 003265 443 WENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQ 521 (835)
Q Consensus 443 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~ 521 (835)
..+++.+.+.++.+..++....+++|++|++++|....++ .+..+++|++|+|++| .+..+|.. ++.+. +|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN----QLQSLPNGVFDKLT-NLK 112 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS----CCCCCCTTTTTTCT-TCC
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC----ccCccChhHhcCCc-CCC
Confidence 3455666666655555555555566666666644432332 2555566666666666 55554443 34454 666
Q ss_pred EEeeccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 522 LFDISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
+|++++|.++.+|.. ++.+++|++|++++| .+..+|...++++++|++|++++|.+.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC
Confidence 666666655555433 455566666666655 455555443455555555555555443
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=3.2e-16 Score=181.99 Aligned_cols=130 Identities=21% Similarity=0.228 Sum_probs=67.8
Q ss_pred CCceEEEEeeeCCccc-----cCCC-CCCCcceEEEeccCC-cc--cccchhhcCCCcceEEEeecCCCCccccccCchH
Q 003265 443 WENVRRLSLMQNQIET-----LSEV-PKCPHLLTLFLDFNQ-EL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM 513 (835)
Q Consensus 443 ~~~~r~l~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~-~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i 513 (835)
..+++.|++.+|.+.. ++.. ..+++|++|++++|. .+ .....++.++++|++|+|++|. .+..+|..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~~~l~~~~ 231 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV---PLEKLATLL 231 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS---CHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC---cHHHHHHHH
Confidence 3466677776665433 2222 356677777777654 11 1112223456777777777764 455566666
Q ss_pred hhhhhcccEEeeccc-------cccccchhhcCCCCCcEE-ecccccccCCcchHHhccCcccceeeecCcCc
Q 003265 514 SELGSSLQLFDISLT-------LIKELPEELKKLVNLKCL-NLRWAYRLNKIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 514 ~~l~~~L~~L~L~~~-------~i~~Lp~~i~~L~~L~~L-~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
..+. +|++|+++++ .+..++..+.++++|+.| .+.+. ....+|.. +..+++|++|++++|.+
T Consensus 232 ~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~-~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 232 QRAP-QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAV-YSVCSRLTTLNLSYATV 301 (594)
T ss_dssp HHCT-TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGG-HHHHTTCCEEECTTCCC
T ss_pred hcCC-cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHH-HHhhCCCCEEEccCCCC
Confidence 6666 7777764332 233444444555555554 23222 11233332 34556666666666653
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.59 E-value=1.2e-15 Score=177.04 Aligned_cols=310 Identities=16% Similarity=0.146 Sum_probs=200.8
Q ss_pred cCCceEEEEeeeCCcccc-----CCC-CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhh
Q 003265 442 RWENVRRLSLMQNQIETL-----SEV-PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSE 515 (835)
Q Consensus 442 ~~~~~r~l~l~~~~~~~l-----~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~ 515 (835)
...+++.|++.+|.+..+ +.. ..+++|++|.+++|....++ ..+.++++|+.|+++.+.........+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 346899999998887632 222 57899999999976544655 55899999999999865311122345566777
Q ss_pred hhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCc-chHHhccCcccceeeecCcCccCcccCCCcccccCCc
Q 003265 516 LGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKI-PRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGG 594 (835)
Q Consensus 516 l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 594 (835)
+. +|+.|+++++....+|..+..+++|++|++++|. +... ....+..+++|++|++.++ +. +
T Consensus 269 ~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~--------------~ 331 (592)
T 3ogk_B 269 PR-KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IG--------------D 331 (592)
T ss_dssp CT-TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH--------------H
T ss_pred cc-cccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cC--------------H
Confidence 87 9999999988788888888899999999999995 4322 2233688999999999832 22 1
Q ss_pred ccchHhhcCCCCCCeEEEEe-----------cchhhHHHHhhcccccccceeeecCCCCCCCccccccccc-ccccccce
Q 003265 595 EVLVQELLGLKYLEVLELTL-----------GSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFA-DLNHLNEL 662 (835)
Q Consensus 595 ~~~~~~l~~L~~L~~L~l~~-----------~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~~~L~~L 662 (835)
.....-...+++|+.|++.. +..+. ..+......+++|+.|.+..+... ... ...+. .+++|+.|
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~-~~~-~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDIT-NES-LESIGTYLKNLCDF 408 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCC-HHH-HHHHHHHCCSCCEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCcc-HHH-HHHHHhhCCCCcEE
Confidence 11222335688899999983 33221 112221223468999998544332 221 12333 37889999
Q ss_pred eccc---cccccccccc-chhcccccCCcccCCCccEEeEecCCC-CCC--Cchh-hccCCccEEeeecCccchhhcccC
Q 003265 663 GIDR---AEELEELKID-YAEIVRKRREPFVFRSLHLVAIYECHK-LKD--LTFL-VFAPSLKSLSLYGCNAMEEIISVG 734 (835)
Q Consensus 663 ~l~~---~~~l~~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~c~~-l~~--l~~l-~~l~~L~~L~L~~~~~l~~~~~~~ 734 (835)
++++ |+.++..+.+ ... .....+++|+.|+|+.|.+ +.+ +..+ ..+++|++|+|++|......+.
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~-----~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-- 481 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVR-----SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM-- 481 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHH-----HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH--
T ss_pred EEeecCCCccccCchHHHHHH-----HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH--
Confidence 9985 3444432111 000 0012488999999988753 332 2233 3589999999998764332211
Q ss_pred ccCCCcccccCCCCCCcccEeecCCCCcccc--ccCCCCCCCCccEEEEecCCCcCCCC
Q 003265 735 KFDETPEVMGHISPFGNLQTLDLSRLPILKS--IYWKPLPFTHLKEMAVTHGCNQLRKL 791 (835)
Q Consensus 735 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~i~~~C~~L~~l 791 (835)
..+..+++|++|+|++|+ ++. ++.....+++|+.|+++ +|+ ++.-
T Consensus 482 ---------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls-~n~-it~~ 528 (592)
T 3ogk_B 482 ---------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQ-GYR-ASMT 528 (592)
T ss_dssp ---------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEE-SCB-CCTT
T ss_pred ---------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECc-CCc-CCHH
Confidence 134578999999999987 432 22222357999999999 887 6543
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=5.7e-15 Score=153.91 Aligned_cols=199 Identities=17% Similarity=0.129 Sum_probs=137.7
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEeeccccccccchhhcCCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDISLTLIKELPEELKKLV 541 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~ 541 (835)
..++++++++++++....+|..++ ++|++|+|++| .+..+ |..+..+. +|++|+|++|.++.+|.. +.++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N----~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSEN----LLYTFSLATLMPYT-RLTQLNLDRAELTKLQVD-GTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTS----CCSEEEGGGGTTCT-TCCEEECTTSCCCEEECC-SCCT
T ss_pred cccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCC----cCCccCHHHhhcCC-CCCEEECCCCccCcccCC-CCCC
Confidence 456778888888655447776532 67888888888 67665 45677777 888888888888888765 7788
Q ss_pred CCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHH
Q 003265 542 NLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQ 621 (835)
Q Consensus 542 ~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~ 621 (835)
+|++|++++| .+..+|.. +..+++|++|++++|.+.... ...+..+++|+.|+++.+...
T Consensus 78 ~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~---------------~~~~~~l~~L~~L~L~~N~l~--- 137 (290)
T 1p9a_G 78 VLGTLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSLP---------------LGALRGLGELQELYLKGNELK--- 137 (290)
T ss_dssp TCCEEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCCC---------------SSTTTTCTTCCEEECTTSCCC---
T ss_pred cCCEEECCCC-cCCcCchh-hccCCCCCEEECCCCcCcccC---------------HHHHcCCCCCCEEECCCCCCC---
Confidence 8888888888 67788875 788888888888888766421 122455566666655543221
Q ss_pred HHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecC
Q 003265 622 ILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYEC 701 (835)
Q Consensus 622 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c 701 (835)
...+ ..+..+++|+.|++++|. ++.+....+. .+++|+.|+|++|
T Consensus 138 -----------------------~~~~--~~~~~l~~L~~L~L~~N~-l~~l~~~~~~---------~l~~L~~L~L~~N 182 (290)
T 1p9a_G 138 -----------------------TLPP--GLLTPTPKLEKLSLANNN-LTELPAGLLN---------GLENLDTLLLQEN 182 (290)
T ss_dssp -----------------------CCCT--TTTTTCTTCCEEECTTSC-CSCCCTTTTT---------TCTTCCEEECCSS
T ss_pred -----------------------ccCh--hhcccccCCCEEECCCCc-CCccCHHHhc---------CcCCCCEEECCCC
Confidence 1111 245667888888888764 3434333322 4788888888888
Q ss_pred CCCCCCc-hhhccCCccEEeeecCcc
Q 003265 702 HKLKDLT-FLVFAPSLKSLSLYGCNA 726 (835)
Q Consensus 702 ~~l~~l~-~l~~l~~L~~L~L~~~~~ 726 (835)
.+..+| .+..+++|+.|+|++|+.
T Consensus 183 -~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 183 -SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -cCCccChhhcccccCCeEEeCCCCc
Confidence 566766 466778888888887654
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=1.6e-15 Score=165.65 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=83.4
Q ss_pred CCCCcceEEEeccCCccccc----chhhcCCCcceEEEeecCCCCcccc----ccCchH-------hhhhhcccEEeecc
Q 003265 463 PKCPHLLTLFLDFNQELKIA----DGFFQFMPSLKVLKMSYCGQSWSSF----QLPVGM-------SELGSSLQLFDISL 527 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~Ls~~~~~~~i~----~lp~~i-------~~l~~~L~~L~L~~ 527 (835)
..+++|++|++++|...... ...+..+++|++|+|++| .+. .+|..+ ..+. +|++|+|++
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~----~~~~l~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~ 103 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI----FTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSD 103 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC----CTTSCGGGSHHHHHHHHHHHTTCT-TCCEEECCS
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc----ccCccccchhHHHHHHHHHHhhCC-cccEEECCC
Confidence 45677888888866533211 122567788888888887 333 234443 4555 788888888
Q ss_pred ccccc-----cchhhcCCCCCcEEecccccccCC-----cchHHhccC---------cccceeeecCcCccCcccCCCcc
Q 003265 528 TLIKE-----LPEELKKLVNLKCLNLRWAYRLNK-----IPRQLISNY---------SRLCVLRMFGTGWFNFHEAPEDS 588 (835)
Q Consensus 528 ~~i~~-----Lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~~i~~L---------~~L~~L~l~~~~~~~~~~~~~~~ 588 (835)
|.+.. +|..+..+++|++|+|++| .+.. ++.. +..+ ++|++|++++|.+....+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~----- 176 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARA-LQELAVNKKAKNAPPLRSIICGRNRLENGSM----- 176 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHH-HHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-----
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHH-HHHHhhhhhcccCCCCcEEECCCCCCCcHHH-----
Confidence 87765 6777777888888888877 3432 2221 3333 777788877776642000
Q ss_pred cccCCcccchHhhcCCCCCCeEEEEecchh
Q 003265 589 VLFGGGEVLVQELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 589 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 618 (835)
......+..+++|+.|+++.+...
T Consensus 177 ------~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 177 ------KEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp ------HHHHHHHHHCTTCCEEECCSSCCC
T ss_pred ------HHHHHHHHhCCCcCEEECcCCCCC
Confidence 011134556667777777666544
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=7.8e-16 Score=168.19 Aligned_cols=235 Identities=14% Similarity=0.079 Sum_probs=132.1
Q ss_pred hcCCCcceEEEeecCCCCccccc-----cCchHhhhhhcccEEeeccccccc----cchhh-------cCCCCCcEEecc
Q 003265 486 FQFMPSLKVLKMSYCGQSWSSFQ-----LPVGMSELGSSLQLFDISLTLIKE----LPEEL-------KKLVNLKCLNLR 549 (835)
Q Consensus 486 ~~~l~~Lr~L~Ls~~~~~~~i~~-----lp~~i~~l~~~L~~L~L~~~~i~~----Lp~~i-------~~L~~L~~L~L~ 549 (835)
+..+++|++|+|++| .+.. ++..+..+. +|++|+|++|.+.. +|..+ ..+++|++|+|+
T Consensus 28 l~~~~~L~~L~L~~n----~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN----TIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHCSCCCEEECTTS----EECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HhcCCCccEEECCCC----CCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 677888888888888 5554 333455676 88888888875543 34444 678888888888
Q ss_pred cccccCC-----cchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCC---------CCCCeEEEEec
Q 003265 550 WAYRLNK-----IPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGL---------KYLEVLELTLG 615 (835)
Q Consensus 550 ~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~~L~l~~~ 615 (835)
+| .+.. +|.. +.++++|++|++++|.+..... ......+..+ ++|+.|+++.+
T Consensus 103 ~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-----------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 103 DN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-----------AKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp SC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-----------HHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred CC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-----------HHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 88 4554 5655 7888888888888887642110 0111223333 67777777766
Q ss_pred chh--hHHHHhhcccccccceeeecCCCCCCCcc--cccc-cccccccccceeccccccc----ccccccchhcccccCC
Q 003265 616 SYH--ALQILLSSNRLKSCIRSLFLPLAGDATSI--IDAT-AFADLNHLNELGIDRAEEL----EELKIDYAEIVRKRRE 686 (835)
Q Consensus 616 ~~~--~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~-~l~~~~~L~~L~l~~~~~l----~~l~~~~~~~~~~~~~ 686 (835)
... .+..+.......++|+.|.+++|.....- .... .+..+++|+.|++++|... ..+ +..+
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l-------- 240 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIAL-------- 240 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHG--------
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHH--------
Confidence 653 33333232233346667777666433110 0011 4455666666666665421 111 1111
Q ss_pred cccCCCccEEeEecCCCCCCC-----c-hh--hccCCccEEeeecCccch----hhcccCccCCCcccccCC-CCCCccc
Q 003265 687 PFVFRSLHLVAIYECHKLKDL-----T-FL--VFAPSLKSLSLYGCNAME----EIISVGKFDETPEVMGHI-SPFGNLQ 753 (835)
Q Consensus 687 ~~~~~~L~~L~L~~c~~l~~l-----~-~l--~~l~~L~~L~L~~~~~l~----~~~~~~~~~~~~~~~~~~-~~~~~L~ 753 (835)
..+++|+.|+|++| .+... + .+ +.+++|++|+|++|.... .++. .+ ..+|+|+
T Consensus 241 -~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~~l~~L~ 306 (386)
T 2ca6_A 241 -KSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDEKMPDLL 306 (386)
T ss_dssp -GGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHHHCTTCC
T ss_pred -ccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHhcCCCce
Confidence 23566666666666 34332 1 23 226666666666654433 1322 22 3356666
Q ss_pred EeecCCCC
Q 003265 754 TLDLSRLP 761 (835)
Q Consensus 754 ~L~l~~~~ 761 (835)
+|++++|+
T Consensus 307 ~L~l~~N~ 314 (386)
T 2ca6_A 307 FLELNGNR 314 (386)
T ss_dssp EEECTTSB
T ss_pred EEEccCCc
Confidence 66666643
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.4e-14 Score=155.58 Aligned_cols=237 Identities=15% Similarity=0.109 Sum_probs=163.7
Q ss_pred EEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccc-cccCch-HhhhhhcccE-Ee
Q 003265 448 RLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSS-FQLPVG-MSELGSSLQL-FD 524 (835)
Q Consensus 448 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i-~~lp~~-i~~l~~~L~~-L~ 524 (835)
.+.-+++.+..+|... .++++.|++++|....++.+.|.++++|++|+|++| .+ +.+|.. +..+. +|++ +.
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N----~i~~~i~~~~f~~L~-~l~~~l~ 86 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN----DVLEVIEADVFSNLP-KLHEIRI 86 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC----TTCCEECTTSBCSCT-TCCEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC----CCCCccChhHhhcch-hhhhhhc
Confidence 4666777888887542 468999999977655899888999999999999999 65 456654 45676 7664 66
Q ss_pred ecccccccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcC-ccCcccCCCcccccCCcccchHhhc
Q 003265 525 ISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTG-WFNFHEAPEDSVLFGGGEVLVQELL 602 (835)
Q Consensus 525 L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 602 (835)
+++|+++.+ |..+..+++|++|++++| .+..+|...+....++..|++.++. +.... ...+.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~---------------~~~f~ 150 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE---------------RNSFV 150 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC---------------TTSST
T ss_pred ccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc---------------ccchh
Confidence 777899999 456899999999999999 7888887445666778888886543 22111 11133
Q ss_pred CC-CCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcc
Q 003265 603 GL-KYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIV 681 (835)
Q Consensus 603 ~L-~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 681 (835)
.+ ..++.|+++.+....+..... ...+|+.|.+.+++....++ ...+..+++|+.|++++|. ++.++.
T Consensus 151 ~~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~-l~~lp~------ 219 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR-IHSLPS------ 219 (350)
T ss_dssp TSBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSC-CCCCCS------
T ss_pred hcchhhhhhccccccccCCChhhc---cccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCC-cCccCh------
Confidence 33 357778887776654433211 12467777777655554444 1346677788888887653 443321
Q ss_pred cccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeec
Q 003265 682 RKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYG 723 (835)
Q Consensus 682 ~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 723 (835)
..+.+|++|.+.++.+++.+|.+..+++|+.+++.+
T Consensus 220 ------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ------YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ------hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 136777777777777777777777788888887764
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=9.6e-15 Score=150.98 Aligned_cols=171 Identities=23% Similarity=0.351 Sum_probs=142.5
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
..+...+..+..++......+++.|++.+|.+..++....+++|++|++++|....++...|.++++|++|+|++|
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n---- 119 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN---- 119 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS----
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC----
Confidence 3455555566677777788899999999999998887799999999999977655888888899999999999999
Q ss_pred cccccCch-HhhhhhcccEEeeccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcc
Q 003265 505 SSFQLPVG-MSELGSSLQLFDISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFH 582 (835)
Q Consensus 505 ~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 582 (835)
.+..+|.. ++.+. +|++|++++|.++.+|.. ++.+++|++|++++| .+..+|...++.+++|++|++++|.+....
T Consensus 120 ~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 120 QLQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 88888766 57888 999999999999999765 689999999999999 788888776799999999999999876421
Q ss_pred cCCCcccccCCcccchHhhcCCCCCCeEEEEecc
Q 003265 583 EAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 616 (835)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 616 (835)
...+..+++|+.|++..|.
T Consensus 198 ---------------~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 198 ---------------DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ---------------TTTTTTCTTCCEEECCSSC
T ss_pred ---------------HHHHhCCcCCCEEEccCCC
Confidence 2236677888888877554
No 96
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=2e-14 Score=158.54 Aligned_cols=290 Identities=11% Similarity=0.048 Sum_probs=174.9
Q ss_pred cccchHHHHHHHHHHh-hc------CCceEEEE--EcCCCCcHHHHHHHHHhhcccCC---CCCC-eEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCL-VE------ESAGIIGL--YGMGGVGKTTLLTHINNKFLESP---TNFD-CVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~---~~f~-~~~wv~~s~~~~~~ 162 (835)
.++||+++++++.+.+ .. ...+.+.| +|++|+||||||+.+++.. ... ..|+ .++|+.+....+..
T Consensus 23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCHH
Confidence 7999999999999988 42 24566777 9999999999999999876 211 1122 36788877777888
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEcccCCcc--------cccccccCCCCCC--C--CCc
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLR--GKRIVLLLDDIWERV--------DLTKVGVPLPGPQ--N--TTS 228 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~l~~~l~~~~--~--~~s 228 (835)
.++..++.+++..... ...+.......+.+.+. +++++|||||++... .+..+...+.... + ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999998754321 22345566667777664 789999999996532 2222222221011 2 345
Q ss_pred EEEEEccchhhhhcc---------CCCceEEeccCChHHHHHHHHHHhC---CCCcCCChhHHHHHHHHHHHcC------
Q 003265 229 KVVFTTRFIDVCGSM---------EADRKFLVACLSEKDAWELFREKVG---EETLKSDHDIAELAQIVAKECV------ 290 (835)
Q Consensus 229 ~IivTtR~~~v~~~~---------~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~~i~~~c~------ 290 (835)
.||+||+...+...+ .....+.+.+|+.++++++|...+. ... ..+ .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-VWE---PRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-SCC---HHHHHHHHHHHCGGGTSC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCC---hHHHHHHHHHHHHhccCC
Confidence 588788765432111 1123399999999999999976542 211 111 467788889999
Q ss_pred CcchHHHHHHHHHhc------C--ccHHHHHh-hhCCCcchhhHHHHHHhcCCCchhhHHHhhhccCC--CCccccHHHH
Q 003265 291 GLPLALITIGRAMAY------R--KKAEQWRQ-FAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYS--EDYGILKWDL 359 (835)
Q Consensus 291 GlPlai~~~~~~l~~------~--~~~~~w~~-~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp--~~~~i~~~~l 359 (835)
|+|..+..+...... . -+...+.. ...... ...+.-++..||. ..+.++..++.+. .+..++...+
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~--~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~~~~~~~ 333 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA--ASIQTHELEALSI-HELIILRLIAEATLGGMEWINAGLL 333 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC--------CCSSSSSCH-HHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc--cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHH
Confidence 999766655432211 0 11122221 111100 1223335577887 7888888887643 2234545444
Q ss_pred HHHHH--h-cCCccCCcccchHhhHHHHHHHHHHhcccccc
Q 003265 360 IDCWI--G-EGFLGESDRFGAENQGYDILDTLVRACLLEEV 397 (835)
Q Consensus 360 i~~W~--a-~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 397 (835)
...+. + .- ... ..........+++.|...+++...
T Consensus 334 ~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 334 RQRYEDASLTM-YNV--KPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHH-SCC--CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhh-cCC--CCCCHHHHHHHHHHHHhCCCEEee
Confidence 44332 1 10 000 011234566789999999999764
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=2.3e-14 Score=149.48 Aligned_cols=170 Identities=17% Similarity=0.231 Sum_probs=91.3
Q ss_pred cCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCc
Q 003265 487 QFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYS 566 (835)
Q Consensus 487 ~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~ 566 (835)
..+++|+.|++++| .+..+| .+..+. +|++|++++|.++.++. +..+++|++|++++| .+..+|. +..++
T Consensus 43 ~~l~~L~~L~l~~~----~i~~~~-~~~~l~-~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNS----DIKSVQ-GIQYLP-NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS--LKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTS----CCCCCT-TGGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG--GTTCT
T ss_pred hhcCcccEEEccCC----CcccCh-hHhcCC-CCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh--hccCC
Confidence 34445555555555 444443 244554 55555555555555544 555555555555555 3444443 55555
Q ss_pred ccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCc
Q 003265 567 RLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATS 646 (835)
Q Consensus 567 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~ 646 (835)
+|++|++++|.+.. +..+..+++|+.|+++.+....
T Consensus 113 ~L~~L~L~~n~i~~-----------------~~~l~~l~~L~~L~l~~n~l~~--------------------------- 148 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-----------------INGLVHLPQLESLYLGNNKITD--------------------------- 148 (291)
T ss_dssp TCCEEECTTSCCCC-----------------CGGGGGCTTCCEEECCSSCCCC---------------------------
T ss_pred CCCEEECCCCcCCC-----------------ChhhcCCCCCCEEEccCCcCCc---------------------------
Confidence 55555555554432 1223334444444443222111
Q ss_pred ccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhhccCCccEEeeecCcc
Q 003265 647 IIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNA 726 (835)
Q Consensus 647 ~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~ 726 (835)
.+ .+..+++|+.|++++|. +..+.+ . ..+++|+.|+|++| .+..++.+..+++|+.|++++|..
T Consensus 149 ~~---~l~~l~~L~~L~L~~N~-l~~~~~--l---------~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 149 IT---VLSRLTKLDTLSLEDNQ-ISDIVP--L---------AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CG---GGGGCTTCSEEECCSSC-CCCCGG--G---------TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred ch---hhccCCCCCEEEccCCc-cccchh--h---------cCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCcc
Confidence 11 34455667777776553 222222 2 24778888888887 577777777888888888887654
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=3.5e-14 Score=153.41 Aligned_cols=245 Identities=12% Similarity=0.061 Sum_probs=134.2
Q ss_pred CCCcceEEEeccCCcccccc----hhhcCCC-cceEEEeecCCCCcccccc-CchHhhh-----hhcccEEeeccccccc
Q 003265 464 KCPHLLTLFLDFNQELKIAD----GFFQFMP-SLKVLKMSYCGQSWSSFQL-PVGMSEL-----GSSLQLFDISLTLIKE 532 (835)
Q Consensus 464 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~Lr~L~Ls~~~~~~~i~~l-p~~i~~l-----~~~L~~L~L~~~~i~~ 532 (835)
..++|++|++++|.....+. ..|.+++ +|++|+|++| .+... +..++.+ . +|++|+|++|.++.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N----~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN----SLGFKNSDELVQILAAIPA-NVTSLNLSGNFLSY 94 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS----CGGGSCHHHHHHHHHTSCT-TCCEEECCSSCGGG
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC----CCCHHHHHHHHHHHhccCC-CccEEECcCCcCCh
Confidence 34458888888665435554 5577777 7888888888 66654 4455554 5 78888888887775
Q ss_pred cchh-----hcCC-CCCcEEecccccccCCcchHHhc----c-CcccceeeecCcCccCcccCCCcccccCCcccchHhh
Q 003265 533 LPEE-----LKKL-VNLKCLNLRWAYRLNKIPRQLIS----N-YSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQEL 601 (835)
Q Consensus 533 Lp~~-----i~~L-~~L~~L~L~~~~~l~~lp~~~i~----~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 601 (835)
.+.. +..+ ++|++|++++| .+...+...+. . .++|++|++++|.+...+. ......+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----------~~l~~~l 162 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-----------DELIQIL 162 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-----------HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-----------HHHHHHH
Confidence 5332 4444 78888888888 46655543232 3 2578888888776653110 1122233
Q ss_pred cCCC-CCCeEEEEecchhhHHHHhhcccccccceeeecCCCCCCCccccccccccc-ccccceecccccccccccccchh
Q 003265 602 LGLK-YLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADL-NHLNELGIDRAEELEELKIDYAE 679 (835)
Q Consensus 602 ~~L~-~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~l~~~~~~ 679 (835)
..++ +|+.|+++.+....... ......+..+ ++|+.|++++|.. .......+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~------------------------~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~~~l~ 217 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNC------------------------AELAKFLASIPASVTSLDLSANLL-GLKSYAELA 217 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCH------------------------HHHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHH
T ss_pred hcCCccccEeeecCCCCchhhH------------------------HHHHHHHHhCCCCCCEEECCCCCC-ChhHHHHHH
Confidence 3443 55555555443321110 0000123333 4777777776642 221111111
Q ss_pred cccccCCccc-CCCccEEeEecCCCCCCCc------hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcc
Q 003265 680 IVRKRREPFV-FRSLHLVAIYECHKLKDLT------FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNL 752 (835)
Q Consensus 680 ~~~~~~~~~~-~~~L~~L~L~~c~~l~~l~------~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 752 (835)
..... .++|+.|+|++| .+.+.+ .+..+++|+.|+|++|.. ..+... ....+...+..+++|
T Consensus 218 -----~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l-~~i~~~----~~~~l~~~~~~l~~L 286 (362)
T 3goz_A 218 -----YIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIV-KNMSKE----QCKALGAAFPNIQKI 286 (362)
T ss_dssp -----HHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHH-TTCCHH----HHHHHHTTSTTCCEE
T ss_pred -----HHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCc-cccCHH----HHHHHHHHhccCCce
Confidence 00011 357888888887 455543 135678888888887751 111000 000111245677788
Q ss_pred cEeecCCCC
Q 003265 753 QTLDLSRLP 761 (835)
Q Consensus 753 ~~L~l~~~~ 761 (835)
+.|++++++
T Consensus 287 ~~LdL~~N~ 295 (362)
T 3goz_A 287 ILVDKNGKE 295 (362)
T ss_dssp EEECTTSCB
T ss_pred EEEecCCCc
Confidence 888888754
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=152.72 Aligned_cols=84 Identities=13% Similarity=0.009 Sum_probs=51.4
Q ss_pred CCcceEEEeecCCCCcccc-ccCchH--hhhhhcccEEeecccccccc-c----hhhcCCCCCcEEecccccccCCcchH
Q 003265 489 MPSLKVLKMSYCGQSWSSF-QLPVGM--SELGSSLQLFDISLTLIKEL-P----EELKKLVNLKCLNLRWAYRLNKIPRQ 560 (835)
Q Consensus 489 l~~Lr~L~Ls~~~~~~~i~-~lp~~i--~~l~~~L~~L~L~~~~i~~L-p----~~i~~L~~L~~L~L~~~~~l~~lp~~ 560 (835)
+++|++|+|++| .+. ..|..+ +.+. +|++|+|++|.+... | ..+..+++|++|++++| .+..++..
T Consensus 90 ~~~L~~L~l~~n----~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDL----KITGTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCE 163 (310)
T ss_dssp HSCCCEEEEESC----CCBSCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTT
T ss_pred cCceeEEEeeCC----EeccchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHH
Confidence 355777777777 444 344444 5665 777777777766642 1 23345667777777776 45555544
Q ss_pred HhccCcccceeeecCcCc
Q 003265 561 LISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 561 ~i~~L~~L~~L~l~~~~~ 578 (835)
.++.+++|++|++++|.+
T Consensus 164 ~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp SCCCCTTCCEEECCSCTT
T ss_pred HhccCCCCCEEECCCCCC
Confidence 466777777777776654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=2.4e-14 Score=163.94 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=22.9
Q ss_pred cCCCccEEeEecCCCCCCCchhhccCCccEEeeecCcc
Q 003265 689 VFRSLHLVAIYECHKLKDLTFLVFAPSLKSLSLYGCNA 726 (835)
Q Consensus 689 ~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~ 726 (835)
.+++|+.|+|++| .+..++.+..+++|+.|+|++|..
T Consensus 173 ~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 173 GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEEE
T ss_pred cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCcC
Confidence 3566666666666 455556666666666666666543
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=9e-14 Score=141.79 Aligned_cols=170 Identities=24% Similarity=0.319 Sum_probs=126.3
Q ss_pred EEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCC
Q 003265 426 FLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQS 503 (835)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~ 503 (835)
.+...+..+..+|... +..++.|++++|.+..++. ...+++|++|++++|....+++..|.++++|++|+|++|
T Consensus 18 ~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--- 93 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN--- 93 (251)
T ss_dssp EEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS---
T ss_pred EEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC---
Confidence 4555666666666432 3578888888888877654 377888888888866544677777888888888888888
Q ss_pred ccccccCch-HhhhhhcccEEeeccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCc
Q 003265 504 WSSFQLPVG-MSELGSSLQLFDISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNF 581 (835)
Q Consensus 504 ~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~ 581 (835)
.+..+|.. +..+. +|++|+|++|.++.+|.. +..+++|++|+|++| .+..+|.+.++.+++|++|++++|.+...
T Consensus 94 -~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 94 -QLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp -CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -cccccChhHhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77777654 46676 888888888888888765 577888888888888 67788775588888888888888877642
Q ss_pred ccCCCcccccCCcccchHhhcCCCCCCeEEEEecch
Q 003265 582 HEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSY 617 (835)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 617 (835)
. ...+..+++|+.|++..|..
T Consensus 171 ~---------------~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 P---------------HGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp C---------------TTTTTTCTTCCEEECCSCCB
T ss_pred C---------------HHHHhCCCCCCEEEeeCCce
Confidence 1 22366777888888876653
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=4e-14 Score=147.67 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=83.6
Q ss_pred cCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhccc
Q 003265 442 RWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQ 521 (835)
Q Consensus 442 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~ 521 (835)
.+.+++.+++.++.+..++....+++|++|++++|....++. +.++++|++|+|++| .+..+|. ++.+. +|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n----~l~~~~~-l~~l~-~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN----KVKDLSS-LKDLK-KLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS----CCCCGGG-GTTCT-TCC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC----cCCCChh-hccCC-CCC
Confidence 345677777777777666666667777777777554434444 667777777777777 5666553 66666 777
Q ss_pred EEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 522 LFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
+|++++|.++.++ .+..+++|++|++++| .+..++. +..+++|++|++++|.+.
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccc
Confidence 7777777776663 5666777777777777 5566643 677777777777766654
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.2e-13 Score=135.11 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=126.7
Q ss_pred ccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccc-cCchHhhhhhc
Q 003265 441 KRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQ-LPVGMSELGSS 519 (835)
Q Consensus 441 ~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~-lp~~i~~l~~~ 519 (835)
....+++.+++.+|.+..++....+++|++|++++|....++ .+..+++|++|++++| .+.. .|..++.+. +
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n----~l~~~~~~~l~~l~-~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGK----DVTSDKIPNLSGLT-S 113 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECT----TCBGGGSCCCTTCT-T
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECC----ccCcccChhhcCCC-C
Confidence 345689999999999999887789999999999977433443 3889999999999999 7765 678889998 9
Q ss_pred ccEEeeccccccc-cchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccch
Q 003265 520 LQLFDISLTLIKE-LPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLV 598 (835)
Q Consensus 520 L~~L~L~~~~i~~-Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (835)
|++|++++|.++. .|..++.+++|++|++++|..+..+|. +..+++|++|++++|.+.. +
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~ 174 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------Y 174 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------C
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------h
Confidence 9999999999986 678899999999999999954888884 9999999999999998764 2
Q ss_pred HhhcCCCCCCeEEEEecchh
Q 003265 599 QELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 599 ~~l~~L~~L~~L~l~~~~~~ 618 (835)
..+..+++|+.|+++.|.+.
T Consensus 175 ~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTGGGCSSCCEEEECBC---
T ss_pred HHhccCCCCCEEEeeCcccC
Confidence 24778899999999877643
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=3.1e-15 Score=173.68 Aligned_cols=304 Identities=16% Similarity=0.138 Sum_probs=159.8
Q ss_pred cCCceEEEEeeeCC--cc--ccCCC-CCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecCCCC---ccccccCch
Q 003265 442 RWENVRRLSLMQNQ--IE--TLSEV-PKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYCGQS---WSSFQLPVG 512 (835)
Q Consensus 442 ~~~~~r~l~l~~~~--~~--~l~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~---~~i~~lp~~ 512 (835)
...+++.|++.++. +. .+... ..+++|++|++++|... .+ ...+.++++|+.|+++.+... ..+..++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 45689999998876 11 12111 45899999999988555 53 445788999999997655210 023445556
Q ss_pred HhhhhhcccEE-eeccccccccchhhcCCCCCcEEecccccccCCc-chHHhccCcccceeeecCcCccCcccCCCcccc
Q 003265 513 MSELGSSLQLF-DISLTLIKELPEELKKLVNLKCLNLRWAYRLNKI-PRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVL 590 (835)
Q Consensus 513 i~~l~~~L~~L-~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 590 (835)
+..+. +|+.| ++.+.....+|..+..+++|++|++++|. +..- ...++.++++|++|++.+| ..
T Consensus 261 l~~~~-~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~----------- 326 (594)
T 2p1m_B 261 LSGCK-ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IE----------- 326 (594)
T ss_dssp HHTCT-TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH-----------
T ss_pred HhcCC-CcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cC-----------
Confidence 66666 77777 45544445566666667777777777774 3321 1222456777777777765 21
Q ss_pred cCCcccchHhh-cCCCCCCeEEEEe---------cchh--hHHHHhhcccccccceeeecCCCCCCCccccccccccccc
Q 003265 591 FGGGEVLVQEL-LGLKYLEVLELTL---------GSYH--ALQILLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNH 658 (835)
Q Consensus 591 ~~~~~~~~~~l-~~L~~L~~L~l~~---------~~~~--~l~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 658 (835)
...+..+ ..+++|+.|++.. +..+ .+..+. ..+++|+.|.+..+.. +..........+++
T Consensus 327 ----~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~---~~~~~L~~L~~~~~~l-~~~~~~~l~~~~~~ 398 (594)
T 2p1m_B 327 ----DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS---MGCPKLESVLYFCRQM-TNAALITIARNRPN 398 (594)
T ss_dssp ----HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH---HHCTTCCEEEEEESCC-CHHHHHHHHHHCTT
T ss_pred ----HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH---HhchhHHHHHHhcCCc-CHHHHHHHHhhCCC
Confidence 1112222 2366777777632 1111 111111 1134666665443322 22111111224667
Q ss_pred ccceecc-----cccccccccccchhcccccCCcccCCCccEEeEecCCCCCC--Cchhhc-cCCccEEeeecCccchhh
Q 003265 659 LNELGID-----RAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKD--LTFLVF-APSLKSLSLYGCNAMEEI 730 (835)
Q Consensus 659 L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~~~~l~~~ 730 (835)
|+.|+++ +|..+.....+..- +.....+++|+.|+|++ .+.+ ++.+.. +++|+.|+|++|......
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~----~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGF----GAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHH----HHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred cceeEeecccCCCcccccCCchhhHH----HHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 7777776 33444321111000 00002366777777755 2332 223333 677777777766532222
Q ss_pred cccCccCCCcccccCCCCCCcccEeecCCCCcccccc--CCCCCCCCccEEEEecCCCc
Q 003265 731 ISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIY--WKPLPFTHLKEMAVTHGCNQ 787 (835)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~~~L~~L~i~~~C~~ 787 (835)
+. .....+++|+.|+|++|+. .... .....+++|+.|+++ +|+.
T Consensus 473 ~~-----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~-~~~~ 518 (594)
T 2p1m_B 473 MH-----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMS-SCSV 518 (594)
T ss_dssp HH-----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEE-SSCC
T ss_pred HH-----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeee-CCCC
Confidence 11 0113467777777777654 2211 122346777777777 7754
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=1e-13 Score=141.32 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=122.2
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-HhhhhhcccEE
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQLF 523 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~~L 523 (835)
..+++++.++.+..+|... .++++.|++++|....++...|.++++|++|+|++| .+..++.. +..+. +|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----~l~~~~~~~~~~l~-~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN----QLQTLSAGVFDDLT-ELGTL 88 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS----CCCCCCTTTTTTCT-TCCEE
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC----cCCccCHhHhccCC-cCCEE
Confidence 4567888888888887643 378999999977655777777999999999999999 78777654 67888 99999
Q ss_pred eeccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhc
Q 003265 524 DISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELL 602 (835)
Q Consensus 524 ~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 602 (835)
+|++|.++.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++++|.+.... ...+.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------~~~~~ 152 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIP---------------AGAFD 152 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------TTTTT
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccC---------------HHHcC
Confidence 999999999875 5689999999999999 788898876789999999999999876421 12366
Q ss_pred CCCCCCeEEEEecch
Q 003265 603 GLKYLEVLELTLGSY 617 (835)
Q Consensus 603 ~L~~L~~L~l~~~~~ 617 (835)
.+++|+.|+++.|..
T Consensus 153 ~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 153 KLTNLQTLSLSTNQL 167 (251)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred cCcCCCEEECCCCcC
Confidence 777788877776543
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2e-14 Score=155.31 Aligned_cols=258 Identities=14% Similarity=0.051 Sum_probs=138.1
Q ss_pred EeccCCcccccchhhcCCCcceEEEeecCCCCccccccC-----chHhhhhhcccEEeecccccccc-chhhcCC-----
Q 003265 472 FLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-----VGMSELGSSLQLFDISLTLIKEL-PEELKKL----- 540 (835)
Q Consensus 472 ~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-----~~i~~l~~~L~~L~L~~~~i~~L-p~~i~~L----- 540 (835)
.++.++.....+.++...++|++|+|++| .+...+ ..+..+..+|++|+|++|.+... +..+..+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLN----NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTS----CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCC----CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 44433322333444455555777777777 565554 23333322577777777766654 3344443
Q ss_pred CCCcEEecccccccCCcchHHh----ccC-cccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEec
Q 003265 541 VNLKCLNLRWAYRLNKIPRQLI----SNY-SRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLG 615 (835)
Q Consensus 541 ~~L~~L~L~~~~~l~~lp~~~i----~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 615 (835)
++|++|++++| .+...+...+ ..+ ++|++|++++|.+..... ......+..+
T Consensus 80 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----------~~l~~~l~~~----------- 136 (362)
T 3goz_A 80 ANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-----------SEFKQAFSNL----------- 136 (362)
T ss_dssp TTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-----------HHHHHHHTTS-----------
T ss_pred CCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-----------HHHHHHHHhC-----------
Confidence 66777777776 3443332212 233 566666666665542110 0011112221
Q ss_pred chhhHHHHhhcccccccceeeecCCCCCCCcc--cccccccccc-cccceecccccccccccccchhcccccCCcccC-C
Q 003265 616 SYHALQILLSSNRLKSCIRSLFLPLAGDATSI--IDATAFADLN-HLNELGIDRAEELEELKIDYAEIVRKRREPFVF-R 691 (835)
Q Consensus 616 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~l~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~-~ 691 (835)
+++|+.|++++|...... .....+..++ +|++|++++|.. ....+..+.. ....+ +
T Consensus 137 --------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~~~~l~~-----~l~~~~~ 196 (362)
T 3goz_A 137 --------------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASKNCAELAK-----FLASIPA 196 (362)
T ss_dssp --------------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHH-----HHHTSCT
T ss_pred --------------CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-chhhHHHHHH-----HHHhCCC
Confidence 124444555444322100 0012333444 899999998753 3222222210 00124 5
Q ss_pred CccEEeEecCCCCCC-----Cc-hhhc-cCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCC---
Q 003265 692 SLHLVAIYECHKLKD-----LT-FLVF-APSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLP--- 761 (835)
Q Consensus 692 ~L~~L~L~~c~~l~~-----l~-~l~~-l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--- 761 (835)
+|+.|+|++| .+.. ++ .+.. .++|++|+|++|......+. .+...+..+++|+.|++++|.
T Consensus 197 ~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--------~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 197 SVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE--------NLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH--------HHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred CCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH--------HHHHHHhcCCCccEEEeccCCccc
Confidence 9999999999 5665 33 3444 46999999999854332110 111245778999999999874
Q ss_pred ----ccccccCCCCCCCCccEEEEecCCC
Q 003265 762 ----ILKSIYWKPLPFTHLKEMAVTHGCN 786 (835)
Q Consensus 762 ----~l~~l~~~~~~~~~L~~L~i~~~C~ 786 (835)
.+..+......+++|+.|+++ +++
T Consensus 268 i~~~~~~~l~~~~~~l~~L~~LdL~-~N~ 295 (362)
T 3goz_A 268 MSKEQCKALGAAFPNIQKIILVDKN-GKE 295 (362)
T ss_dssp CCHHHHHHHHTTSTTCCEEEEECTT-SCB
T ss_pred cCHHHHHHHHHHhccCCceEEEecC-CCc
Confidence 133444455677889999998 553
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=7.7e-14 Score=159.67 Aligned_cols=171 Identities=19% Similarity=0.217 Sum_probs=118.5
Q ss_pred ccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhh
Q 003265 439 DVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGS 518 (835)
Q Consensus 439 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~ 518 (835)
....+..++.|.+.++.+..++....+++|+.|+|++|....+++ +..+++|+.|+|++| .+..+| .++.+.
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N----~l~~l~-~l~~l~- 109 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN----KIKDLS-SLKDLK- 109 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS----CCCCCT-TSTTCT-
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC----CCCCCh-hhccCC-
Confidence 334556777788888777777777778888888888665445554 777888888888888 666665 677777
Q ss_pred cccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccch
Q 003265 519 SLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLV 598 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (835)
+|++|+|++|.+..+| .+..|++|+.|+|++| .+..++. +..|++|++|++++|.+.. +
T Consensus 110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~-----------------~ 168 (605)
T 1m9s_A 110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD-----------------I 168 (605)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCC-----------------C
T ss_pred CCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCC-----------------c
Confidence 8888888888777764 4777888888888887 5666643 7788888888888776653 1
Q ss_pred HhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeecCCCC
Q 003265 599 QELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFLPLAG 642 (835)
Q Consensus 599 ~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 642 (835)
..+..+++|+.|+++.|....++.+ ..+++|+.|+|++|.
T Consensus 169 ~~l~~l~~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 169 VPLAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQE 208 (605)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGGG----TTCTTCSEEECCSEE
T ss_pred hhhccCCCCCEEECcCCCCCCChHH----ccCCCCCEEEccCCc
Confidence 1166777777777776665544321 223456666666553
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=4e-13 Score=134.66 Aligned_cols=123 Identities=24% Similarity=0.326 Sum_probs=66.3
Q ss_pred EEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhcccEEeecc
Q 003265 449 LSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSSLQLFDISL 527 (835)
Q Consensus 449 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~L~~L~L~~ 527 (835)
++..++.+..+|.. -.++|+.|++++|....+++..|.++++|++|+|++| .+..+|... ..+. +|++|+|++
T Consensus 24 v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N----~l~~i~~~~~~~l~-~L~~L~Ls~ 97 (229)
T 3e6j_A 24 VDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN----QLGALPVGVFDSLT-QLTVLDLGT 97 (229)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCT-TCCEEECCS
T ss_pred eEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC----CCCCcChhhcccCC-CcCEEECCC
Confidence 44444444444432 1255666666644433444444555666666666666 555555432 4454 666666666
Q ss_pred ccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 528 TLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 528 ~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC
Confidence 666555443 355666666666655 45555554 555666666666655554
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=3.6e-13 Score=134.05 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=95.9
Q ss_pred EEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEeec
Q 003265 448 RLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDIS 526 (835)
Q Consensus 448 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L~ 526 (835)
.+...++.+..+|... .++|+.|++++|....++...|.++++|++|+|++| .+..+ |..+..+. +|++|+|+
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N----~i~~~~~~~~~~l~-~L~~L~Ls 88 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN----QISELAPDAFQGLR-SLNSLVLY 88 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS----CCCEECTTTTTTCS-SCCEEECC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC----cCCCcCHHHhhCCc-CCCEEECC
Confidence 3455555555555432 256777777755544666656777777777777777 66665 55666776 77777777
Q ss_pred cccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCC
Q 003265 527 LTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLK 605 (835)
Q Consensus 527 ~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 605 (835)
+|.|+.+|.. +..+++|++|+|++| .+..++...+..+++|++|++++|.+.... ...+..++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~ 152 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA---------------KGTFSPLR 152 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC---------------TTTTTTCT
T ss_pred CCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC---------------HHHHhCCC
Confidence 7777777655 466777777777777 566665545777777777777777665421 12255566
Q ss_pred CCCeEEEEecc
Q 003265 606 YLEVLELTLGS 616 (835)
Q Consensus 606 ~L~~L~l~~~~ 616 (835)
+|+.|++..|.
T Consensus 153 ~L~~L~L~~N~ 163 (220)
T 2v9t_B 153 AIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 77777776554
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=5.6e-13 Score=140.59 Aligned_cols=221 Identities=15% Similarity=0.074 Sum_probs=127.3
Q ss_pred CcceEEEeecCCCCccccc--cCc--hHhhhhhcccEEeeccccccc-cchhh--cCCCCCcEEecccccccCC-cc---
Q 003265 490 PSLKVLKMSYCGQSWSSFQ--LPV--GMSELGSSLQLFDISLTLIKE-LPEEL--KKLVNLKCLNLRWAYRLNK-IP--- 558 (835)
Q Consensus 490 ~~Lr~L~Ls~~~~~~~i~~--lp~--~i~~l~~~L~~L~L~~~~i~~-Lp~~i--~~L~~L~~L~L~~~~~l~~-lp--- 558 (835)
..++.|.+.++ .+.. +.. ....+. +|++|++++|.+.. .|..+ ..+++|++|++++| .+.. .|
T Consensus 64 ~~l~~l~l~~~----~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~ 137 (310)
T 4glp_A 64 LRVRRLTVGAA----QVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLA 137 (310)
T ss_dssp CCCCEEEECSC----CCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHH
T ss_pred cceeEEEEeCC----cCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhH
Confidence 34778888887 4322 111 122344 79999999998874 46666 88999999999999 4443 22
Q ss_pred hHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHHHhhcccccccceeeec
Q 003265 559 RQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQILLSSNRLKSCIRSLFL 638 (835)
Q Consensus 559 ~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~~~~~~L~~L~l 638 (835)
...+..+++|++|++++|.+... ....+..+++|+.|+++.|.......+...
T Consensus 138 ~~~~~~~~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------ 190 (310)
T 4glp_A 138 ELQQWLKPGLKVLSIAQAHSPAF---------------SCEQVRAFPALTSLDLSDNPGLGERGLMAA------------ 190 (310)
T ss_dssp HHHTTBCSCCCEEEEECCSSCCC---------------CTTSCCCCTTCCEEECCSCTTCHHHHHHTT------------
T ss_pred HHHhhhccCCCEEEeeCCCcchh---------------hHHHhccCCCCCEEECCCCCCccchhhhHH------------
Confidence 22256899999999999987642 223467788888888887764432222111
Q ss_pred CCCCCCCcccccccccccccccceeccccccccccccc--chhcccccCCcccCCCccEEeEecCCCCCCC-c-hhhcc-
Q 003265 639 PLAGDATSIIDATAFADLNHLNELGIDRAEELEELKID--YAEIVRKRREPFVFRSLHLVAIYECHKLKDL-T-FLVFA- 713 (835)
Q Consensus 639 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~--~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-~-~l~~l- 713 (835)
..+..+++|++|++++|.. +.+... +.. ..+++|+.|+|++| .+..+ | .+..+
T Consensus 191 ------------~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~--------~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 191 ------------LCPHKFPAIQNLALRNTGM-ETPTGVCAALA--------AAGVQPHSLDLSHN-SLRATVNPSAPRCM 248 (310)
T ss_dssp ------------SCTTSSCCCCSCBCCSSCC-CCHHHHHHHHH--------HHTCCCSSEECTTS-CCCCCCCSCCSSCC
T ss_pred ------------HhhhcCCCCCEEECCCCCC-CchHHHHHHHH--------hcCCCCCEEECCCC-CCCccchhhHHhcc
Confidence 1223445566666655432 211110 000 13466666666666 33332 2 23332
Q ss_pred --CCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccEEEEe
Q 003265 714 --PSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKEMAVT 782 (835)
Q Consensus 714 --~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~ 782 (835)
++|++|+|++|. ++.++. .+ +++|+.|+|+++ +++.++. ...+++|+.|+++
T Consensus 249 ~~~~L~~L~Ls~N~-l~~lp~------------~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~ 302 (310)
T 4glp_A 249 WSSALNSLNLSFAG-LEQVPK------------GL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLD 302 (310)
T ss_dssp CCTTCCCEECCSSC-CCSCCS------------CC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECS
T ss_pred CcCcCCEEECCCCC-CCchhh------------hh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECc
Confidence 566666666653 334432 11 256666666663 4555443 3455666666665
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=4.1e-13 Score=137.59 Aligned_cols=153 Identities=22% Similarity=0.207 Sum_probs=126.8
Q ss_pred cCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhh
Q 003265 436 EAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSE 515 (835)
Q Consensus 436 ~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~ 515 (835)
.++......+++.+++.+|.+..++....+++|++|++++|....++. +.++++|++|+|++| .+..+|....
T Consensus 33 ~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N----~l~~l~~~~~- 105 (263)
T 1xeu_A 33 DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN----RLKNLNGIPS- 105 (263)
T ss_dssp SEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS----CCSCCTTCCC-
T ss_pred cccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC----ccCCcCcccc-
Confidence 334445567899999999999988877889999999999776546666 889999999999999 7877775444
Q ss_pred hhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcc
Q 003265 516 LGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGE 595 (835)
Q Consensus 516 l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 595 (835)
. +|++|+|++|.++.+| .+..+++|++|++++| .+..+|. +..+++|++|++++|.+..
T Consensus 106 -~-~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~--------------- 164 (263)
T 1xeu_A 106 -A-CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN--------------- 164 (263)
T ss_dssp -S-SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB---------------
T ss_pred -C-cccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc---------------
Confidence 5 9999999999999986 5889999999999999 6888874 8999999999999998774
Q ss_pred cchHhhcCCCCCCeEEEEecchh
Q 003265 596 VLVQELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 596 ~~~~~l~~L~~L~~L~l~~~~~~ 618 (835)
+..+..+++|+.|+++.+...
T Consensus 165 --~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 --TGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --CTTSTTCCCCCEEEEEEEEEE
T ss_pred --hHHhccCCCCCEEeCCCCccc
Confidence 144778899999999877654
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=9.5e-13 Score=130.99 Aligned_cols=148 Identities=26% Similarity=0.311 Sum_probs=126.0
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
..+...+.++..+|... +..++.|++.+|.+..++. ...+++|+.|++++|....+++..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS--
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC--
Confidence 34556666777777532 3689999999999998874 478999999999977655776667999999999999999
Q ss_pred CccccccCchH-hhhhhcccEEeecccccccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 503 SWSSFQLPVGM-SELGSSLQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 503 ~~~i~~lp~~i-~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
.+..+|..+ ..+. +|++|+|++|.++.+ |..+..+++|++|+|++| .+..++.+.+..+++|++|++++|.+.
T Consensus 91 --~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 --KITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp --CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred --cCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 899998875 5687 999999999999998 567899999999999999 788888777899999999999988764
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=6.7e-13 Score=131.10 Aligned_cols=124 Identities=23% Similarity=0.308 Sum_probs=81.0
Q ss_pred EEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhcccEEeecc
Q 003265 449 LSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSSLQLFDISL 527 (835)
Q Consensus 449 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~L~~L~L~~ 527 (835)
+...++.+..++.. -.++|+.|++++|....++...|.++++|++|+|++| .+..+|... ..+. +|++|+|++
T Consensus 12 v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~-~L~~L~Ls~ 85 (208)
T 2o6s_A 12 VECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN----KLQSLPNGVFNKLT-SLTYLNLST 85 (208)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS----CCCCCCTTTTTTCT-TCCEEECCS
T ss_pred EEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC----ccCccChhhcCCCC-CcCEEECCC
Confidence 34444444444432 2456777777755444666666677777777777777 666666543 5566 777777777
Q ss_pred ccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 528 TLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 528 ~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence 777777654 567777777777777 566666655677777777777776655
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=1.1e-12 Score=131.49 Aligned_cols=146 Identities=26% Similarity=0.342 Sum_probs=125.1
Q ss_pred EEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 427 LVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
+...+..+..+|.. -+.+++.|++++|.+..+.. ...+++|+.|++++|....++...|.++++|++|+|++|
T Consensus 24 v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N---- 98 (229)
T 3e6j_A 24 VDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN---- 98 (229)
T ss_dssp EECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----
T ss_pred eEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC----
Confidence 44555566666642 34789999999999998744 478999999999977655888888999999999999999
Q ss_pred cccccCch-HhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 505 SSFQLPVG-MSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 505 ~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
.+..+|.. +..+. +|++|+|++|.++.+|..+..+++|++|+|++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88888876 46787 999999999999999999999999999999999 788898776899999999999988765
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=1.6e-12 Score=127.13 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=122.7
Q ss_pred cEEEEcCCCcccCCccccCCceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 425 NFLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
..+...+..+..++......+++.|++.+|.+..++....+++|++|++++|.........|..+++|++|+|++|
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n---- 122 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS---- 122 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS----
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC----
Confidence 4555566677777777888899999999999888888899999999999977654423334899999999999999
Q ss_pred cccc-cCchHhhhhhcccEEeecccc-ccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 505 SSFQ-LPVGMSELGSSLQLFDISLTL-IKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 505 ~i~~-lp~~i~~l~~~L~~L~L~~~~-i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
.+.. .|..++.+. +|++|++++|. ++.+| .+..+++|++|++++| .+..++. +..+++|++|++++|.+.
T Consensus 123 ~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 123 AHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred ccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 7765 677888998 99999999997 99998 7999999999999999 6888884 999999999999988764
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=130.31 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=108.0
Q ss_pred EEEeeeCCccccCCCCCCCcceEEEeccCCcccc-cchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEee
Q 003265 448 RLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKI-ADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDI 525 (835)
Q Consensus 448 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L 525 (835)
.+++++|.+..+|.. -.+.++.|++++|....+ +..+|.++++|++|+|++| .+..++. .+..+. +|++|+|
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l~-~L~~L~L 88 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN----KITDIEEGAFEGAS-GVNEILL 88 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS----CCCEECTTTTTTCT-TCCEEEC
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC----cCCEECHHHhCCCC-CCCEEEC
Confidence 677777777777643 244567888886654444 4456788888888888888 7777765 577777 8888888
Q ss_pred ccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCC
Q 003265 526 SLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGL 604 (835)
Q Consensus 526 ~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 604 (835)
++|.++.+|.. +..+++|++|+|++| .+..+++..+..+++|++|++++|.+... .+..+..+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l 152 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV---------------APGAFDTL 152 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB---------------CTTTTTTC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE---------------CHHHhcCC
Confidence 88888887654 778888888888888 56777544478888888888888877642 12346677
Q ss_pred CCCCeEEEEecch
Q 003265 605 KYLEVLELTLGSY 617 (835)
Q Consensus 605 ~~L~~L~l~~~~~ 617 (835)
++|+.|+++.|..
T Consensus 153 ~~L~~L~L~~N~l 165 (220)
T 2v70_A 153 HSLSTLNLLANPF 165 (220)
T ss_dssp TTCCEEECCSCCE
T ss_pred CCCCEEEecCcCC
Confidence 8888888876653
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=129.61 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=123.1
Q ss_pred EEEEcCCCcccCCccccCCceEEEEeeeCCccccCC---CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 426 FLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE---VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
.+...+..+..+|.. -...++.|++++|.+..++. ...+++|++|++++|....++...|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-- 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-- 91 (220)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--
T ss_pred EeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC--
Confidence 455556666667642 24567899999999998743 378999999999977655788777999999999999999
Q ss_pred CccccccCch-HhhhhhcccEEeecccccccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 503 SWSSFQLPVG-MSELGSSLQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 503 ~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
.+..+|.. +..+. +|++|+|++|.++.+ |..+..+++|++|+|++| .+..+++..+..+++|++|++++|.+.
T Consensus 92 --~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 --RLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp --CCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred --ccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 88888765 67888 999999999999988 678999999999999999 788885555999999999999998765
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=8.9e-14 Score=142.58 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=78.1
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEe
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFD 524 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~ 524 (835)
++..+.+..+.+..++....+++|++|++++|....++ .+..+++|++|+|++| .+..+|. +..+. +|++|+
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N----~i~~~~~-l~~l~-~L~~L~ 91 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN----QISDLSP-LKDLT-KLEELS 91 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS----CCCCCGG-GTTCS-SCCEEE
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC----ccCCChh-hccCC-CCCEEE
Confidence 34444455555555554456677777777755433554 2666777777777777 6666665 66666 777777
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|++|.++.+|.... .+|++|++++| .+..++. +.++++|++|++++|.+.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCC
T ss_pred CCCCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCC
Confidence 77777777664333 67777777777 5666654 677777777777766655
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=9.4e-13 Score=148.89 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=48.0
Q ss_pred ccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc-h
Q 003265 631 SCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT-F 709 (835)
Q Consensus 631 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~ 709 (835)
++|+.|++++|.... ++. +. ++|+.|++++|. ++.++. +.. .-....+.|+.|+|++| .+..+| .
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~---l~--~~L~~L~Ls~N~-L~~lp~--~~~----~L~~~~~~L~~L~Ls~N-~l~~lp~~ 225 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE---LP--ESLEALDVSTNL-LESLPA--VPV----RNHHSEETEIFFRCREN-RITHIPEN 225 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CC--TTCCEEECCSSC-CSSCCC--CC------------CCEEEECCSS-CCCCCCGG
T ss_pred CCcCEEECCCCCCCC-cch---hh--CCCCEEECcCCC-CCchhh--HHH----hhhcccccceEEecCCC-cceecCHH
Confidence 355555555554332 331 22 677777777653 333322 110 00001233388888888 567776 3
Q ss_pred hhccCCccEEeeecCccchhhcc
Q 003265 710 LVFAPSLKSLSLYGCNAMEEIIS 732 (835)
Q Consensus 710 l~~l~~L~~L~L~~~~~l~~~~~ 732 (835)
+..+++|+.|+|++|...+.++.
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHH
Confidence 66788888888888766555543
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=3.3e-12 Score=126.02 Aligned_cols=146 Identities=23% Similarity=0.380 Sum_probs=122.4
Q ss_pred EEEcCCCcccCCccccCCceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCc
Q 003265 427 LVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSW 504 (835)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~ 504 (835)
+...+.++..+|.. ...++++|++.+|.+..++. ...+++|++|++++|....++...|.++++|++|+|++|
T Consensus 12 v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n---- 86 (208)
T 2o6s_A 12 VECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN---- 86 (208)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----
T ss_pred EEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC----
Confidence 44445555556532 34689999999999998776 368999999999977655888888899999999999999
Q ss_pred cccccCch-HhhhhhcccEEeeccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 505 SSFQLPVG-MSELGSSLQLFDISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 505 ~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
.+..+|.. +..+. +|++|++++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHhHhcCcc-CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 88888766 57888 999999999999999765 689999999999999 688888876899999999999988654
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=2.6e-12 Score=138.55 Aligned_cols=148 Identities=22% Similarity=0.304 Sum_probs=105.5
Q ss_pred EEEEcCCCcccCCccccCCceEEEEeeeCCccccCCC--C-CCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCC
Q 003265 426 FLVCAGAGLKEAPDVKRWENVRRLSLMQNQIETLSEV--P-KCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQ 502 (835)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~ 502 (835)
.+...+..+..+|.. -+..++.|++++|.+..++.. . .+++|++|++++|....+++..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-- 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-- 98 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC--
Confidence 345555566666642 234677888888888776553 3 7788888888866544666666788888888888888
Q ss_pred CccccccCch-HhhhhhcccEEeecccccccc-chhhcCCCCCcEEecccccccCCcchHHh---ccCcccceeeecCcC
Q 003265 503 SWSSFQLPVG-MSELGSSLQLFDISLTLIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLI---SNYSRLCVLRMFGTG 577 (835)
Q Consensus 503 ~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i---~~L~~L~~L~l~~~~ 577 (835)
.+..+|.. +..+. +|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+|...+ ..+++|++|++++|.
T Consensus 99 --~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 --HLHTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp --CCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred --cCCcCCHHHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 77776653 56676 888888888888777 566778888888888888 6777877644 567888888888777
Q ss_pred ccC
Q 003265 578 WFN 580 (835)
Q Consensus 578 ~~~ 580 (835)
+..
T Consensus 175 l~~ 177 (361)
T 2xot_A 175 LKK 177 (361)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=3e-12 Score=144.81 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=75.4
Q ss_pred ceEEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEe
Q 003265 445 NVRRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFD 524 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~ 524 (835)
+++.|++.+|.+..+|... +++|++|++++|....+| ..+++|++|+|++| .++.+|. ++. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N----~l~~ip~-l~~---~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN----RLSTLPE-LPA---SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS----CCSCCCC-CCT---TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC----CCCCcch-hhc---CCCEEE
Confidence 5666777777776665432 366777777755433555 33567777777777 6666665 332 677777
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.+.
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCC
Confidence 77777777776 5677777777777 5666665 4567777777777655
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=2.4e-12 Score=122.22 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=107.1
Q ss_pred CceEEEEeeeCCcc--ccCCC-CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccc-cCchHhhhhhc
Q 003265 444 ENVRRLSLMQNQIE--TLSEV-PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQ-LPVGMSELGSS 519 (835)
Q Consensus 444 ~~~r~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~-lp~~i~~l~~~ 519 (835)
.+++.|++.+|.+. .++.. ..+++|++|++++|....+ ..|..+++|++|+|++| .+.. +|..+..+. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~-~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN----RIFGGLDMLAEKLP-N 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC----CCCSCCCHHHHHCT-T
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC----cCchHHHHHHhhCC-C
Confidence 57899999999887 67665 7889999999997764455 44888999999999999 7777 676666787 9
Q ss_pred ccEEeeccccccccc--hhhcCCCCCcEEecccccccCCcch---HHhccCcccceeeecCcCccC
Q 003265 520 LQLFDISLTLIKELP--EELKKLVNLKCLNLRWAYRLNKIPR---QLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 520 L~~L~L~~~~i~~Lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~~~ 580 (835)
|++|++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++++|....
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999999999886 78889999999999999 6777776 458899999999999887654
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.6e-10 Score=125.89 Aligned_cols=287 Identities=15% Similarity=-0.010 Sum_probs=171.9
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccC----CCC-CCeEEEEEecCcc-CHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLES----PTN-FDCVIWVVVSKDL-RLEKLQ 165 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~s~~~-~~~~~~ 165 (835)
.++||+++++++.+++.. ...+.+.|+|++|+||||||+.+++..... ... ....+|+++.... +...++
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 100 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence 799999999999877754 446789999999999999999999875111 011 3456788887776 788888
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc---ccc-cccCCCCCCCCCcEEEEEccchhhhh
Q 003265 166 EDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD---LTK-VGVPLPGPQNTTSKVVFTTRFIDVCG 241 (835)
Q Consensus 166 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~-l~~~l~~~~~~~s~IivTtR~~~v~~ 241 (835)
..++.++..................+...+..++.+|||||++.... .+. +...+. .. .+..||+||+......
T Consensus 101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~-~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR-SD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT-SS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc-CC-cceEEEEEECCCchHh
Confidence 88888873222112333456667778888877767999999965321 122 111121 12 5788999998753211
Q ss_pred cc------CCCceEEeccCChHHHHHHHHHHhCC--CCcCCChhHHHHHHHHHHHcC---Ccch-HHHHHHHHH--hc--
Q 003265 242 SM------EADRKFLVACLSEKDAWELFREKVGE--ETLKSDHDIAELAQIVAKECV---GLPL-ALITIGRAM--AY-- 305 (835)
Q Consensus 242 ~~------~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPl-ai~~~~~~l--~~-- 305 (835)
.+ .....+.+.+++.++..+++...+.. .....++ +..+.|++.++ |.|. |+..+..+. ..
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 11 11238999999999999999987531 1112222 45666777777 8887 444443332 11
Q ss_pred -CccHHHHHhhhCCCcchhhHHHHHHhcCCCchhhHHHhhhccCCCC-ccccHHHHHHHHHhcCCccCCcccchHhhHHH
Q 003265 306 -RKKAEQWRQFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYSED-YGILKWDLIDCWIGEGFLGESDRFGAENQGYD 383 (835)
Q Consensus 306 -~~~~~~w~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp~~-~~i~~~~li~~W~a~g~i~~~~~~~~~~~~~~ 383 (835)
.-+.+.+...-. +.....+..++..|+. ..+..+..++. ... -.+. +.....--..| + .........+
T Consensus 256 ~~i~~~~v~~~~~--~~~~~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~----~~~~~~~~~~ 325 (384)
T 2qby_B 256 GIIRKEHVDKAIV--DYEQERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-Q----KPLSYRRFSD 325 (384)
T ss_dssp SCCCHHHHHHHHH--HHHHHHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-C----CCCCHHHHHH
T ss_pred CccCHHHHHHHHH--HHhcchHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-C----CCCCHHHHHH
Confidence 123333333100 0112345566788887 56665555555 111 1110 01111111112 1 1123456778
Q ss_pred HHHHHHHhcccccc
Q 003265 384 ILDTLVRACLLEEV 397 (835)
Q Consensus 384 ~~~~L~~~~ll~~~ 397 (835)
++..|...+++...
T Consensus 326 ~l~~L~~~gli~~~ 339 (384)
T 2qby_B 326 IISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHTTSEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 89999999999764
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.1e-12 Score=123.71 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=77.9
Q ss_pred cCCceEEEEeeeCCccccCCCCCCC-cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhc
Q 003265 442 RWENVRRLSLMQNQIETLSEVPKCP-HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSS 519 (835)
Q Consensus 442 ~~~~~r~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~ 519 (835)
...+++.+++.+|.+..++....+. +|+.|++++|....+ ..|..+++|++|+|++| .+..+|..+ +.+. +
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~-~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN----RICRIGEGLDQALP-D 89 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS----CCCEECSCHHHHCT-T
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC----cccccCcchhhcCC-C
Confidence 3446666777666666665443333 666666665543344 22566666666666666 666666554 5565 6
Q ss_pred ccEEeeccccccccch--hhcCCCCCcEEecccccccCCcchH---HhccCcccceeeecCcCc
Q 003265 520 LQLFDISLTLIKELPE--ELKKLVNLKCLNLRWAYRLNKIPRQ---LISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 520 L~~L~L~~~~i~~Lp~--~i~~L~~L~~L~L~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~ 578 (835)
|++|++++|.++.+|. .+..+++|++|++++| .+..+|.. ++..+++|++|++++|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666666666666665 5666666666666666 45555543 356666666666665543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=4.8e-14 Score=160.42 Aligned_cols=119 Identities=15% Similarity=0.120 Sum_probs=84.0
Q ss_pred cceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCchhh
Q 003265 632 CIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLTFLV 711 (835)
Q Consensus 632 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~ 711 (835)
.|+.|++++|... .++ .+..+++|+.|++++|.. ..+ +..+ ..+++|+.|+|++| .++.+|.++
T Consensus 442 ~L~~L~Ls~n~l~-~lp---~~~~l~~L~~L~Ls~N~l-~~l-p~~~---------~~l~~L~~L~Ls~N-~l~~lp~l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLC---HLEQLLLVTHLDLSHNRL-RAL-PPAL---------AALRCLEVLQASDN-ALENVDGVA 505 (567)
T ss_dssp TCSEEECTTSCCS-SCC---CGGGGTTCCEEECCSSCC-CCC-CGGG---------GGCTTCCEEECCSS-CCCCCGGGT
T ss_pred CceEEEecCCCCC-CCc---CccccccCcEeecCcccc-ccc-chhh---------hcCCCCCEEECCCC-CCCCCcccC
Confidence 5778888887544 344 377888899999987653 333 2233 35889999999988 677788888
Q ss_pred ccCCccEEeeecCccchhh--cccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCC----CCCCccEEE
Q 003265 712 FAPSLKSLSLYGCNAMEEI--ISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPL----PFTHLKEMA 780 (835)
Q Consensus 712 ~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~----~~~~L~~L~ 780 (835)
.+++|+.|+|++|.. ..+ |. .+..+++|+.|+|+++ .+..++.... .+|+|+.|+
T Consensus 506 ~l~~L~~L~Ls~N~l-~~~~~p~------------~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNNRL-QQSAAIQ------------PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSSCC-CSSSTTG------------GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCCCC-CCCCCcH------------HHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 899999999988743 433 33 6778889999999885 4666554332 267777775
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=2.9e-12 Score=138.13 Aligned_cols=155 Identities=18% Similarity=0.169 Sum_probs=120.4
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhc-CCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEe
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQ-FMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFD 524 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~ 524 (835)
+.++..++.+..+|.. -.+.++.|++++|....++...|. ++++|++|+|++| .+..++. .+..+. +|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N----~i~~i~~~~~~~l~-~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPVP-NLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS----CCCEECTTTTTTCT-TCCEEE
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC----cCCccChhhccCCC-CCCEEE
Confidence 4678888888888753 345689999997765577777777 9999999999999 8888874 578888 999999
Q ss_pred eccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcC
Q 003265 525 ISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLG 603 (835)
Q Consensus 525 L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 603 (835)
|++|.++.+|. .+..+.+|++|+|++| .+..++...+..+++|++|++++|.+..+... .+..+..
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~------------~~~~~~~ 161 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE------------LIKDGNK 161 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG------------GTC----
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHH------------HhcCccc
Confidence 99999999865 5889999999999999 67777665699999999999999988752211 1222356
Q ss_pred CCCCCeEEEEecchhhH
Q 003265 604 LKYLEVLELTLGSYHAL 620 (835)
Q Consensus 604 L~~L~~L~l~~~~~~~l 620 (835)
+++|+.|+++.|....+
T Consensus 162 l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CTTCCEEECCSSCCCCC
T ss_pred CCcCCEEECCCCCCCcc
Confidence 88888888887765543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=3.2e-12 Score=118.65 Aligned_cols=123 Identities=24% Similarity=0.217 Sum_probs=96.5
Q ss_pred CceEEEEeeeCCcc--ccCCC-CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccc-cCchHhhhhhc
Q 003265 444 ENVRRLSLMQNQIE--TLSEV-PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQ-LPVGMSELGSS 519 (835)
Q Consensus 444 ~~~r~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~-lp~~i~~l~~~ 519 (835)
.+++.+++.+|.+. .++.. ..+++|+.|++++|....+ ..+..+++|++|+|++| .+.. +|..++.+. +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n----~i~~~~~~~~~~l~-~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN----RVSGGLEVLAEKCP-N 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS----CCCSCTHHHHHHCT-T
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC----cccchHHHHhhhCC-C
Confidence 47888888888887 56654 7788899999886654455 44788888999999888 7776 666666787 8
Q ss_pred ccEEeeccccccccc--hhhcCCCCCcEEecccccccCCcch---HHhccCcccceeeec
Q 003265 520 LQLFDISLTLIKELP--EELKKLVNLKCLNLRWAYRLNKIPR---QLISNYSRLCVLRMF 574 (835)
Q Consensus 520 L~~L~L~~~~i~~Lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~i~~L~~L~~L~l~ 574 (835)
|++|++++|.++.+| ..++.+++|++|++++| .+..+|. ..+..+++|++|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 999999888888875 77888888999999888 6677665 457888888888775
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=1.6e-12 Score=152.71 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=89.8
Q ss_pred CceEEEEeeeCCccccCCC-CCCCcceEEEecc----CCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhh
Q 003265 444 ENVRRLSLMQNQIETLSEV-PKCPHLLTLFLDF----NQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGS 518 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~l~~~-~~~~~L~~L~l~~----~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~ 518 (835)
..++++++..+.+...+.. .....|+.+.+.. ++.+.+++..|..++.|++|+|++| .+..+|..++.+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n----~l~~l~~~~~~l~- 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL----QIFNISANIFKYD- 247 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTS----CCSCCCGGGGGCC-
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC----CCCCCChhhcCCC-
Confidence 4577788877776654322 2233333333221 1222355666888888999999988 7888888888887
Q ss_pred cccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccch
Q 003265 519 SLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLV 598 (835)
Q Consensus 519 ~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (835)
+|++|+|++|.|+.+|..+++|++|++|+|++| .+..+|.. +++|++|++|++++|.+.. .+
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp 309 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVTT----------------LP 309 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCCC----------------CC
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCCc----------------cC
Confidence 899999999888888888888899999999888 67788887 8888889999998887653 23
Q ss_pred HhhcCCCCCCeEEEEecchh
Q 003265 599 QELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 599 ~~l~~L~~L~~L~l~~~~~~ 618 (835)
..++.|++|+.|+++.|...
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCC
T ss_pred hhhhcCCCccEEeCCCCccC
Confidence 34778888888888877754
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.29 E-value=5.1e-11 Score=129.95 Aligned_cols=289 Identities=13% Similarity=0.069 Sum_probs=172.1
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCeEEEEEecCccCHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESP---TNFDCVIWVVVSKDLRLEKLQEDI 168 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i 168 (835)
.++||+++++++..++.. ...+.+.|+|++|+||||+|+.+++...... +.--..+|+++....+...++..+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 99 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAI 99 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHH
Confidence 799999999999998853 4567899999999999999999998761100 112346788888888888999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEcccCCccc----cccc---ccCCCCCC-CCCcEEEEEccchh
Q 003265 169 GKKIGLVGDSWKSRSAEEKALDIFRSL--RGKRIVLLLDDIWERVD----LTKV---GVPLPGPQ-NTTSKVVFTTRFID 238 (835)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~----~~~l---~~~l~~~~-~~~s~IivTtR~~~ 238 (835)
+.+++.... ............+...+ .+++.+|||||++.... .+.+ ........ ..+..+|.||+...
T Consensus 100 ~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 100 AEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999875432 12344666677777777 35688999999965321 1222 11111011 44567888887653
Q ss_pred h--------hhccCCCceEEeccCChHHHHHHHHHHhCC--CCcCCChhHHHHHHHHHHHcC---CcchH-HHHHHHHHh
Q 003265 239 V--------CGSMEADRKFLVACLSEKDAWELFREKVGE--ETLKSDHDIAELAQIVAKECV---GLPLA-LITIGRAMA 304 (835)
Q Consensus 239 v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPla-i~~~~~~l~ 304 (835)
. ...+. ...+.+.+++.++..+++.+.+.. .....++ +..+.+++.++ |.|-. +..+..+..
T Consensus 179 ~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 179 FVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp TSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2 11111 247889999999999999887532 1111222 35566777777 99943 333332221
Q ss_pred -----cC--ccHHHHHhhhCCCcchhhHHHHHHhcCCCchhhHHHhhhc-cCCCCccccHHHHHHHHH----hcCCccCC
Q 003265 305 -----YR--KKAEQWRQFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCC-LYSEDYGILKWDLIDCWI----GEGFLGES 372 (835)
Q Consensus 305 -----~~--~~~~~w~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~-~fp~~~~i~~~~li~~W~----a~g~i~~~ 372 (835)
+. -+.+.++..-. ......+.-++..++. ..+..+...+ ++...-.+....+.+... ..| +
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~--~~~~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 327 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARA--EIERDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-L--- 327 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHH--HHHHHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-C---
T ss_pred HHHHcCCCCcCHHHHHHHHH--HHhhchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-C---
Confidence 11 12233322100 0112345556788887 5665555444 333222444443333321 112 1
Q ss_pred cccchHhhHHHHHHHHHHhcccccc
Q 003265 373 DRFGAENQGYDILDTLVRACLLEEV 397 (835)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~~~ll~~~ 397 (835)
.......+..+++.|...|++...
T Consensus 328 -~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 328 -EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp -CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 122345677889999999998874
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=1.2e-10 Score=127.16 Aligned_cols=286 Identities=15% Similarity=0.095 Sum_probs=176.0
Q ss_pred cccchHHHHHHHHHHhhc----CCce--EEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAG--IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIG 169 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 169 (835)
.++||+++++++.+++.. .... .+.|+|++|+||||||+.+++.. ..... ...+++.++...+...+...++
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 699999999999988865 3334 89999999999999999999987 22111 3467888878778889999999
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEcccCCc--ccccccccCCCCCCC---CCcEEEEEccchhhhhc
Q 003265 170 KKIGLVGDSWKSRSAEEKALDIFRSLR--GKRIVLLLDDIWER--VDLTKVGVPLPGPQN---TTSKVVFTTRFIDVCGS 242 (835)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~---~~s~IivTtR~~~v~~~ 242 (835)
..++..... ...........+...+. +++.+|||||++.. .....+...+..... .+..||++|+.......
T Consensus 96 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 96 RSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 988654321 23355666666666663 67899999999653 223333333320111 46678888776543222
Q ss_pred cC-------CCceEEeccCChHHHHHHHHHHhCC---CCcCCChhHHHHHHHHHHHc---------CCcchHHHHHHHHH
Q 003265 243 ME-------ADRKFLVACLSEKDAWELFREKVGE---ETLKSDHDIAELAQIVAKEC---------VGLPLALITIGRAM 303 (835)
Q Consensus 243 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~~~i~~~c---------~GlPlai~~~~~~l 303 (835)
+. ....+.+.+++.++..+++...+.. .. ..+ .+..+.+++.+ +|.|..+..+....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG-SYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT-SSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC-CCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 21 1236999999999999999887642 11 112 35677888888 78876554443322
Q ss_pred h------cC--ccHHHHHh-hhCCCcchhhHHHHHHhcCCCchhhHHHhhhccCC---CCccccHHHHHHHHHh----cC
Q 003265 304 A------YR--KKAEQWRQ-FAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYS---EDYGILKWDLIDCWIG----EG 367 (835)
Q Consensus 304 ~------~~--~~~~~w~~-~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp---~~~~i~~~~li~~W~a----~g 367 (835)
. +. -+...... .... ....+.-.+..|+. ..+.++..++.+. .+..+....+...+-. .|
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~---~~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEV---LFGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG 326 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHH---SCCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHH---hhhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcC
Confidence 1 11 11111111 1110 11223444667887 6777666666543 2224555555544322 12
Q ss_pred CccCCcccchHhhHHHHHHHHHHhcccccc
Q 003265 368 FLGESDRFGAENQGYDILDTLVRACLLEEV 397 (835)
Q Consensus 368 ~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 397 (835)
.. .........++++|...+++...
T Consensus 327 ~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 327 ER-----PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp CC-----CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred CC-----CCCHHHHHHHHHHHHhCCCeEEe
Confidence 11 11235567789999999999774
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.27 E-value=5e-12 Score=120.04 Aligned_cols=133 Identities=21% Similarity=0.159 Sum_probs=87.3
Q ss_pred CCCcceEEEeccCCcc--cccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccc-cchhhcCC
Q 003265 464 KCPHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKE-LPEELKKL 540 (835)
Q Consensus 464 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~-Lp~~i~~L 540 (835)
..++|+.|++++|... .+|.. +..+++|++|+|++| .+..+ ..++.+. +|++|++++|.+.. +|..+..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n----~l~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV----GLISV-SNLPKLP-KLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS----CCCCC-SSCCCCS-SCCEEEEESCCCCSCCCHHHHHC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC----CCCCh-hhhccCC-CCCEEECcCCcCchHHHHHHhhC
Confidence 4467777887766644 45443 677777888888877 66666 5666776 78888888777776 66666667
Q ss_pred CCCcEEecccccccCCcch-HHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecc
Q 003265 541 VNLKCLNLRWAYRLNKIPR-QLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 616 (835)
Q Consensus 541 ~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 616 (835)
++|++|++++| .+..+|. ..+..+++|++|++++|.+.... ......+..+++|+.|++..+.
T Consensus 95 ~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN------------DYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST------------THHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH------------HHHHHHHHhCccCcEecCCCCC
Confidence 77888888777 5666652 23777777777777777665310 0001245666677766666544
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=2.9e-11 Score=131.84 Aligned_cols=291 Identities=12% Similarity=0.102 Sum_probs=166.0
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.++||+++++.+.+++.. ...+.+.|+|++|+||||||+.+++........-...+|+.+....+...++..++.+
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~ 100 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLES 100 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTT
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 799999999999998873 4567899999999999999999998762111102356788877777778888888888
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEcccCCcc------cccccccCCCCCCCCCcEEEEEccchhhhhcc
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLR--GKRIVLLLDDIWERV------DLTKVGVPLPGPQNTTSKVVFTTRFIDVCGSM 243 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~l~~~~~~~s~IivTtR~~~v~~~~ 243 (835)
++..... ...+.......+.+.+. +++.+|||||++... .+..+...+......+..+|+||+.......+
T Consensus 101 l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 101 LDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred hCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 7653321 23345666666666664 458999999996422 12222222210023356677788765432222
Q ss_pred C-------CCceEEeccCChHHHHHHHHHHhCCC--CcCCChhHHHHHHHHHHHcC---CcchHHHHHHH-HHh-----c
Q 003265 244 E-------ADRKFLVACLSEKDAWELFREKVGEE--TLKSDHDIAELAQIVAKECV---GLPLALITIGR-AMA-----Y 305 (835)
Q Consensus 244 ~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~---GlPlai~~~~~-~l~-----~ 305 (835)
. ....+.+.+++.++..+++.+.+... ..... .++.+.+++.++ |.|..+..+.. +.. +
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 1 12579999999999999998865311 11122 355666777777 99985444332 221 0
Q ss_pred --CccHHHHHhhhCCCcchhhHHHHHHhcCCCchhhHHHhhhccCCC-C-ccccHHHHHHHH--HhcCCccCCcccchHh
Q 003265 306 --RKKAEQWRQFAGLGKEVYPLLKFSYDSLQNDTIRSCFLYCCLYSE-D-YGILKWDLIDCW--IGEGFLGESDRFGAEN 379 (835)
Q Consensus 306 --~~~~~~w~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~~~fp~-~-~~i~~~~li~~W--~a~g~i~~~~~~~~~~ 379 (835)
.-+....+..- .+.....+.-.+..+|. ..+..+..++..-+ + -.+....+.+.. +++.+ ........
T Consensus 257 ~~~i~~~~v~~a~--~~~~~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~---g~~~~~~~ 330 (386)
T 2qby_A 257 DTKVKEEYVYMAK--EEIERDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL---GVEAVTQR 330 (386)
T ss_dssp CSSCCHHHHHHHH--HHHHHHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH---TCCCCCHH
T ss_pred CCccCHHHHHHHH--HHHhhchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc---CCCCCCHH
Confidence 01222222100 00112345556677876 55555554542111 1 123333332221 11100 00111234
Q ss_pred hHHHHHHHHHHhccccc
Q 003265 380 QGYDILDTLVRACLLEE 396 (835)
Q Consensus 380 ~~~~~~~~L~~~~ll~~ 396 (835)
....+++.|...+++..
T Consensus 331 ~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 331 RVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 56677888888888865
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=6e-12 Score=120.46 Aligned_cols=141 Identities=15% Similarity=0.085 Sum_probs=108.1
Q ss_pred cCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhh-
Q 003265 459 LSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEEL- 537 (835)
Q Consensus 459 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i- 537 (835)
.+....+++|+.|++++|....++. +....++|++|+|++| .+..+ ..++.+. +|++|+|++|.++.+|..+
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N----~l~~~-~~l~~l~-~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN----EIRKL-DGFPLLR-RLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS----CCCEE-CCCCCCS-SCCEEECCSSCCCEECSCHH
T ss_pred HHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC----CCCcc-cccccCC-CCCEEECCCCcccccCcchh
Confidence 3444678899999999775446643 3344459999999999 77777 5788888 9999999999999998665
Q ss_pred cCCCCCcEEecccccccCCcch-HHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecc
Q 003265 538 KKLVNLKCLNLRWAYRLNKIPR-QLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 616 (835)
Q Consensus 538 ~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 616 (835)
..+++|++|++++| .+..+|. ..+..+++|++|++++|.+.... ......+..+++|+.|+++.+.
T Consensus 85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~------------~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK------------HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST------------THHHHHHHHCTTCSEETTEECC
T ss_pred hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcH------------hHHHHHHHHCCccceeCCCcCC
Confidence 89999999999999 6788886 23889999999999998876311 1112236778889999888776
Q ss_pred hhh
Q 003265 617 YHA 619 (835)
Q Consensus 617 ~~~ 619 (835)
...
T Consensus 152 ~~~ 154 (176)
T 1a9n_A 152 LKE 154 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=3.3e-11 Score=115.37 Aligned_cols=126 Identities=20% Similarity=0.304 Sum_probs=101.3
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-HhhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~~L~L 525 (835)
+.+.+.++.+..++.. -.++|++|++++|....++...|.++++|++|+|++| .+..+|.. ++.+. +|++|++
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~~~~~~~~~l~-~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN----QIQSLPDGVFDKLT-KLTILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS----CCCCCCTTTTTTCT-TCCEEEC
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC----cceEeChhHccCCC-ccCEEEC
Confidence 4566777777777643 3478999999976644777777888999999999999 78888765 46787 9999999
Q ss_pred ccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 526 SLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 526 ~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
++|.++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 99999988765 678999999999998 678888876688999999999988665
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=8e-12 Score=115.96 Aligned_cols=128 Identities=18% Similarity=0.198 Sum_probs=93.0
Q ss_pred CCCcceEEEeccCCcc--cccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccc-cchhhcCC
Q 003265 464 KCPHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKE-LPEELKKL 540 (835)
Q Consensus 464 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~-Lp~~i~~L 540 (835)
..++|+.|++++|... .+|. .+..+++|++|++++| .+..+ ..++.+. +|++|++++|.++. +|..++.+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n----~l~~~-~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINV----GLTSI-ANLPKLN-KLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTS----CCCCC-TTCCCCT-TCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCC----CCCCc-hhhhcCC-CCCEEECCCCcccchHHHHhhhC
Confidence 4577888888877654 4554 4788888888888888 67666 5677787 88888888888887 77777778
Q ss_pred CCCcEEecccccccCCcc--hHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEE
Q 003265 541 VNLKCLNLRWAYRLNKIP--RQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLEL 612 (835)
Q Consensus 541 ~~L~~L~L~~~~~l~~lp--~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 612 (835)
++|++|++++| .+..+| .. ++.+++|++|++++|.+.... ......+..+++|+.|++
T Consensus 88 ~~L~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNLN------------DYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGST------------THHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccchH------------HHHHHHHHHCCCcccccC
Confidence 88888888888 577765 43 788888888888888765311 000134566677776654
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.8e-10 Score=116.74 Aligned_cols=196 Identities=17% Similarity=0.182 Sum_probs=115.6
Q ss_pred cccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++.. .....+... .+... .. ...+......
T Consensus 24 ~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~---~~~~~---~~-~~~~~~~~~~ 95 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITAT---PCGVC---DN-CREIEQGRFV 95 (250)
T ss_dssp GCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCSS---CCSCS---HH-HHHHHTTCCS
T ss_pred HHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCC---CCccc---HH-HHHHhccCCc
Confidence 68999999999999987654 4588999999999999999999876 221111000 00000 00 0000000000
Q ss_pred C--CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCC--cccccccccCCCCCCCCCcEEEEEccchh-hhh-cc
Q 003265 175 V--GDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWE--RVDLTKVGVPLPGPQNTTSKVVFTTRFID-VCG-SM 243 (835)
Q Consensus 175 ~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~-~~ 243 (835)
. ...............+.+.+ .+++.+||+||++. ...+..+...+. ....+..+|+||+... +.. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEEEEESCGGGSCHHHH
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEEEEeCChHhCCHHHH
Confidence 0 00000001111122222222 35689999999964 234444444443 3345678888887643 211 11
Q ss_pred CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHH
Q 003265 244 EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAM 303 (835)
Q Consensus 244 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 303 (835)
.....+.+.+++.++..+++.+.+.......+ .+..+.|++.|+|+|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22468999999999999999987753332222 3567889999999999988776543
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=2.7e-11 Score=117.57 Aligned_cols=126 Identities=18% Similarity=0.228 Sum_probs=96.3
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccc-hhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEe
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIAD-GFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFD 524 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~ 524 (835)
+.++++++.+..+|.. -.++|++|++++|....++. .+|.++++|++|+|++| .+..+ |..+..+. +|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~~~~~~~l~-~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN----QLTGIEPNAFEGAS-HIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS----CCCCBCTTTTTTCT-TCCEEE
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC----CCCCcCHhHcCCcc-cCCEEE
Confidence 4677777777777653 23488889988665445554 35788899999999998 77776 66778887 899999
Q ss_pred eccccccccchh-hcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 525 ISLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 525 L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|++|.|+.+|.. +..+++|++|+|++| .+..+++..+..+++|++|++++|.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999988888654 788889999999888 566664444888888999988887765
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=116.17 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=78.3
Q ss_pred EEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEeec
Q 003265 448 RLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFDIS 526 (835)
Q Consensus 448 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~L~ 526 (835)
.+++.++.+..+|.. -.++|++|++++|....+|. .|.++++|++|+|++| .+..++. .+..+. +|++|+|+
T Consensus 14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N----~i~~i~~~~f~~l~-~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNN----RISTLSNQSFSNMT-QLLTLILS 86 (193)
T ss_dssp EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSS----CCCCCCTTTTTTCT-TCCEEECC
T ss_pred EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCC----cCCEeCHhHccCCC-CCCEEECC
Confidence 455556666665543 23567777777554335553 3677777777777777 6666553 355666 77777777
Q ss_pred cccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCc
Q 003265 527 LTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 527 ~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
+|.|+.+|. .+..+++|++|+|++| .+..+|.+.+..+++|++|++++|.+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 777776643 4667777777777776 56666665566677777777776654
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=6.4e-11 Score=114.90 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=104.1
Q ss_pred eEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccc-hhhcCCCCCcEEe
Q 003265 469 LTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELP-EELKKLVNLKCLN 547 (835)
Q Consensus 469 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~ 547 (835)
++++++++....+|..+ .++|++|+|++| .+..+|..+..+. +|++|+|++|.|+.++ ..+..+++|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n----~i~~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN----QFTLVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS----CCCSCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC----cCchhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 57888865544777653 368999999999 8899999999998 9999999999999996 4689999999999
Q ss_pred cccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecch
Q 003265 548 LRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSY 617 (835)
Q Consensus 548 L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 617 (835)
|++| .+..+|...+..+++|++|++++|.+.... ...+..+++|+.|++..|..
T Consensus 85 Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 85 LSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVP---------------EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCC---------------TTTTTTCTTCCEEECCSSCE
T ss_pred CCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeC---------------hhhhhcCccccEEEeCCCCe
Confidence 9999 788888766999999999999999887422 12366788999999887653
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=2.7e-11 Score=142.28 Aligned_cols=109 Identities=23% Similarity=0.231 Sum_probs=77.9
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCC
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVN 542 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~ 542 (835)
..++.|+.|+|++|....++..++ ++++|++|+|++| .+..+|..++.+. +|++|+|++|.|+.+|..++.|.+
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N----~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN----SLTELPAEIKNLS-NLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS----CCSCCCGGGGGGT-TCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC----cCcccChhhhCCC-CCCEEeCcCCcCCccChhhcCCCC
Confidence 566777777777555446666643 6777777777777 6667777777776 777777777777777777777777
Q ss_pred CcEEecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
|++|+|++| .+..+|.+ +++|++|++|++++|.+.
T Consensus 295 L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 777777777 56777776 777777777777777665
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.15 E-value=2.5e-10 Score=113.85 Aligned_cols=184 Identities=11% Similarity=0.062 Sum_probs=114.7
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 175 (835)
.++|+++.++.+.+++.....+.+.|+|++|+|||++|+.+++... ....-...+.+..+.......+...+.......
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC
T ss_pred HHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHHHHHhccc
Confidence 6899999999999999876665699999999999999999998751 111111233444433333322222221111100
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchhh-hh-ccCCCceEEe
Q 003265 176 GDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFIDV-CG-SMEADRKFLV 251 (835)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~v-~~-~~~~~~~~~l 251 (835)
. .-.+++.+||+||++.. .....+...+. ....+.++|+||+.... .. .......+.+
T Consensus 97 ~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 97 P-----------------IGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp C-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred C-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 0 01257899999999653 22333433333 23456788888876432 11 1122347899
Q ss_pred ccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHH
Q 003265 252 ACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGR 301 (835)
Q Consensus 252 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 301 (835)
.+++.++..+++.+.+.......+ .+..+.+++.++|.|..+..+..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999887643221112 35677888999999986555443
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.1e-10 Score=132.79 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=82.5
Q ss_pred cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEE
Q 003265 467 HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCL 546 (835)
Q Consensus 467 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L 546 (835)
.|++|++++|....+|. |.++++|++|+|++| .+..+|..++.+. +|++|+|++|.|+.+| .++.+++|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N----~l~~lp~~~~~l~-~L~~L~Ls~N~l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN----RLRALPPALAALR-CLEVLQASDNALENVD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS----CCCCCCGGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc----cccccchhhhcCC-CCCEEECCCCCCCCCc-ccCCCCCCcEE
Confidence 36778887664446664 788888888888888 7778888888887 8888888888888888 78888888888
Q ss_pred ecccccccCCc--chHHhccCcccceeeecCcCccC
Q 003265 547 NLRWAYRLNKI--PRQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 547 ~L~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
+|++| .+..+ |.. ++.|++|++|++++|.+..
T Consensus 514 ~Ls~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 514 LLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp ECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred ECCCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 88888 67776 665 8888888888888887764
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=6.8e-11 Score=114.73 Aligned_cols=125 Identities=12% Similarity=0.135 Sum_probs=103.3
Q ss_pred eEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch--HhhhhhcccEEeecccccccc-chhhcCCCCCcE
Q 003265 469 LTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG--MSELGSSLQLFDISLTLIKEL-PEELKKLVNLKC 545 (835)
Q Consensus 469 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~--i~~l~~~L~~L~L~~~~i~~L-p~~i~~L~~L~~ 545 (835)
++++++++....+|..++ .+|++|+|++| .+..++.. ++.+. +|++|+|++|.++.+ |..+..+++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n----~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDN----ELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSC----CCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCC----cCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 788999665447777543 38999999999 88888864 88898 999999999999988 778999999999
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecch
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSY 617 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 617 (835)
|+|++| .+..++...+.++++|++|++++|.+... .+..+..+++|+.|+++.|..
T Consensus 83 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 83 LQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCV---------------MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEE---------------CTTSSTTCTTCCEEECTTCCB
T ss_pred EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCee---------------CHHHhhcCCCCCEEEeCCCCc
Confidence 999999 78888776688999999999999987642 233467788899888886653
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=2.2e-11 Score=118.94 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=81.2
Q ss_pred hhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhcc
Q 003265 485 FFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISN 564 (835)
Q Consensus 485 ~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~ 564 (835)
.|..+++|++|+|++| .+..+| .+..+. +|++|++++|.++.+|..+..+++|++|++++| .+..+|. +..
T Consensus 43 ~~~~l~~L~~L~ls~n----~l~~l~-~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~--~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN----NIEKIS-SLSGME-NLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG--IEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEE----EESCCC-CHHHHT-TCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH--HHH
T ss_pred HHhcCCCCCEEECCCC----CCcccc-ccccCC-CCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc--ccc
Confidence 3777788888888888 777777 777777 888888888887778777777778888888877 6677763 777
Q ss_pred CcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchh
Q 003265 565 YSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 565 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 618 (835)
+++|++|++++|.+.. ...+..+..+++|+.|++..|...
T Consensus 114 l~~L~~L~l~~N~i~~--------------~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITN--------------WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCC--------------HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCCEEECCCCcCCc--------------hhHHHHHhcCCCCCEEEecCCccc
Confidence 7888888888776652 112345677777888887766543
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=9.6e-12 Score=121.57 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=102.9
Q ss_pred ceEEEEeeeC--CccccCC-CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhccc
Q 003265 445 NVRRLSLMQN--QIETLSE-VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQ 521 (835)
Q Consensus 445 ~~r~l~l~~~--~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~ 521 (835)
.++...+.+. .++.++. ...+++|++|++++|....+| .+.++++|++|+|++| .+..+|..++.+. +|+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n----~l~~l~~~~~~~~-~L~ 96 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN----LIKKIENLDAVAD-TLE 96 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE----EECSCSSHHHHHH-HCS
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC----CcccccchhhcCC-cCC
Confidence 3444455443 3344432 367899999999977544776 4899999999999999 8999998888888 999
Q ss_pred EEeeccccccccchhhcCCCCCcEEecccccccCCcch-HHhccCcccceeeecCcCcc
Q 003265 522 LFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPR-QLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 579 (835)
+|++++|.++.+| .+..+++|++|++++| .+..+|. ..+..+++|++|++++|.+.
T Consensus 97 ~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 97 ELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 9999999999998 6899999999999999 6787765 34899999999999998765
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=7.5e-10 Score=105.86 Aligned_cols=126 Identities=19% Similarity=0.220 Sum_probs=101.3
Q ss_pred ceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-HhhhhhcccEEeeccccccccchh-hcCCCCCcE
Q 003265 468 LLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQLFDISLTLIKELPEE-LKKLVNLKC 545 (835)
Q Consensus 468 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~ 545 (835)
.+.++++++....+|..+ .++|+.|++++| .+..+|.. ++.+. +|++|++++|.++.+|.. +..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n----~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESN----KLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSS----CCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCC----cccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCE
Confidence 467888855544777543 368999999999 88888765 47787 999999999999999765 689999999
Q ss_pred EecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecch
Q 003265 546 LNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSY 617 (835)
Q Consensus 546 L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 617 (835)
|++++| .+..+|...+..+++|++|++++|.+.... ...+..+++|+.|+++.|..
T Consensus 81 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------------~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 81 LYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVP---------------DGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC---------------TTTTTTCTTCCEEECCSSCB
T ss_pred EECCCC-CccccCHHHhhCCcccCEEECcCCcceEeC---------------HHHhcCCcccCEEEecCCCe
Confidence 999999 788888876789999999999999876421 12256788899999887764
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=1.7e-09 Score=114.74 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCccc-EeecCCCCccccc
Q 003265 690 FRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQ-TLDLSRLPILKSI 766 (835)
Q Consensus 690 ~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l 766 (835)
+++|+.|+|.++ ++..++ .+..+++|+.|+|.++ ++.+.. ..+.++++|+ .|.+.+ +++.+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceEE
Confidence 566777777665 355555 3666777777777653 444433 1455666676 676665 55555
Q ss_pred cC-CCCCCCCccEEEEecCCCcCCCCCCCCC
Q 003265 767 YW-KPLPFTHLKEMAVTHGCNQLRKLPLDSN 796 (835)
Q Consensus 767 ~~-~~~~~~~L~~L~i~~~C~~L~~lp~~~~ 796 (835)
.. ....+++|+.+++. -++++.++....
T Consensus 289 ~~~aF~~c~~L~~l~l~--~n~i~~I~~~aF 317 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLAT--GDKITTLGDELF 317 (329)
T ss_dssp CTTTTTTCTTEEEEEEC--SSCCCEECTTTT
T ss_pred chhhhhCCccCCEEEeC--CCccCccchhhh
Confidence 53 23346667777764 456666665443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=7.1e-10 Score=105.46 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=62.6
Q ss_pred eEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEeeccccccccchh-hcCCCCCcEE
Q 003265 469 LTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDISLTLIKELPEE-LKKLVNLKCL 546 (835)
Q Consensus 469 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L 546 (835)
+.++++++....+|..+ .++|++|+|++| .+..+ |..++.+. +|++|+|++|+|+.+|.. +..+++|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N----~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNN----QITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSS----CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCC----CccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 45556543333555542 256667777776 56655 34455666 677777777777666654 3566777777
Q ss_pred ecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 547 NLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 547 ~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
+|++| .+..+|.+.+..+++|++|++++|.+.
T Consensus 87 ~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77766 566666655666777777777666544
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=8.8e-10 Score=104.44 Aligned_cols=102 Identities=23% Similarity=0.286 Sum_probs=61.1
Q ss_pred eEEEeccCCcccccchhhcCCCcceEEEeecCCCCcccccc-CchHhhhhhcccEEeeccccccccchh-hcCCCCCcEE
Q 003265 469 LTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQL-PVGMSELGSSLQLFDISLTLIKELPEE-LKKLVNLKCL 546 (835)
Q Consensus 469 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~l-p~~i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L 546 (835)
++++++++....+|..+ .++|++|+|++| .+..+ |..+..+. +|++|+|++|+|+.+|.. +..+++|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N----~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDN----QITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSS----CCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCC----cCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 45566644333555432 255666666666 56655 33455665 666666666666666554 3566666666
Q ss_pred ecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 547 NLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 547 ~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
+|++| .+..+|.+.+.++++|++|++++|.+.
T Consensus 84 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 84 SLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66666 566666554666666666666666543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=8.5e-10 Score=104.88 Aligned_cols=107 Identities=19% Similarity=0.251 Sum_probs=91.1
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~L~~L~L 525 (835)
+.++++++.+..+|... .++|+.|++++|....+++..|.++++|++|+|++| .+..+|..+ ..+. +|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N----~l~~i~~~~~~~l~-~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN----KLTAIPTGVFDKLT-QLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS----CCCCCCTTTTTTCT-TCCEEEC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC----CCCccChhHhCCcc-hhhEEEC
Confidence 56788888888887643 389999999977655787777999999999999999 899998875 6888 9999999
Q ss_pred ccccccccchh-hcCCCCCcEEecccccccCCcchH
Q 003265 526 SLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKIPRQ 560 (835)
Q Consensus 526 ~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~lp~~ 560 (835)
++|.|+.+|.. +..+++|++|+|++| .+...+.+
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~~ 123 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNN-PWDCECRD 123 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSS-CBCTTBGG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCC-Cccccccc
Confidence 99999999876 899999999999999 56655543
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=2.1e-09 Score=113.87 Aligned_cols=185 Identities=15% Similarity=0.166 Sum_probs=114.5
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLV 175 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 175 (835)
.++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ........+++..++......+ ++++..+...
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~ 99 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDVV-RNQIKHFAQK 99 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHB
T ss_pred HHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHHH-HHHHHHHHhc
Confidence 6899999999999999887665599999999999999999998851 1111112344443332222221 1222221100
Q ss_pred CCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh-hhh-ccCCCceEE
Q 003265 176 GDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID-VCG-SMEADRKFL 250 (835)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~-~~~~~~~~~ 250 (835)
. ..+ .+++.++|+||++.. .....+...+. ....++++|+||+... +.. .......+.
T Consensus 100 ~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 100 K----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp C----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred c----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 0 001 356899999999653 23444444333 3345677888776533 211 112345899
Q ss_pred eccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchH-HHHHHHH
Q 003265 251 VACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLA-LITIGRA 302 (835)
Q Consensus 251 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~~~~~ 302 (835)
+.+++.++..+++...+.......+ .+....|++.++|.|.. +..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999887643221122 35677899999999954 4444433
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=2.5e-09 Score=101.21 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=88.4
Q ss_pred EEEEeeeCCccccCCCCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhcccEEee
Q 003265 447 RRLSLMQNQIETLSEVPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSSLQLFDI 525 (835)
Q Consensus 447 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~L~~L~L 525 (835)
+.+++++|.+..+|... .++|+.|++++|....+++..|.++++|++|+|++| .+..+|..+ ..+. +|++|+|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N----~l~~l~~~~f~~l~-~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN----QLTVLPAGVFDKLT-QLTQLSL 85 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS----CCCCCCTTTTTTCT-TCCEEEC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC----CcCccChhhccCCC-CCCEEEC
Confidence 56888888888887643 489999999977655787777999999999999999 888988775 6887 9999999
Q ss_pred ccccccccchh-hcCCCCCcEEecccccccCCc
Q 003265 526 SLTLIKELPEE-LKKLVNLKCLNLRWAYRLNKI 557 (835)
Q Consensus 526 ~~~~i~~Lp~~-i~~L~~L~~L~L~~~~~l~~l 557 (835)
++|.++.+|.. +..+++|++|+|++| .+.-.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNN-PWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCC-CCCCC
Confidence 99999999875 889999999999999 44433
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=9.7e-09 Score=108.89 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=114.1
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++... . ..+ ...+.+..+.......+. ..+..+..
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 102 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF-G-ENWRHNFLELNASDERGINVIR-EKVKEFAR 102 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH-G-GGHHHHEEEEETTCHHHHHTTH-HHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc-C-CcccCceEEeeccccCchHHHH-HHHHHHHh
Confidence 6899999999999999887766799999999999999999998851 1 111 123334333321111111 11111000
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh-hhhc-cCCCceEE
Q 003265 175 VGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID-VCGS-MEADRKFL 250 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~~-~~~~~~~~ 250 (835)
.. ....+++.++|+||++.. .....+...+. ....++++|+||.... +... ......+.
T Consensus 103 ~~----------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 103 TK----------------PIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp SC----------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred hC----------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 00 011257889999999653 23344433333 3345678888876543 1111 11234789
Q ss_pred eccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHH
Q 003265 251 VACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAM 303 (835)
Q Consensus 251 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 303 (835)
+.+++.++..+++.+.+.......+ .+..+.|++.++|.|..+..+....
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999887754432222 3567788899999998765554433
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.80 E-value=1.7e-08 Score=106.98 Aligned_cols=284 Identities=14% Similarity=0.056 Sum_probs=163.4
Q ss_pred CCceEEEEeeeCCc-cccCCCCC-CCcceEEEeccCCcc--cccchhhcCCCcceEEEeecCCCCccccccCchHh-h--
Q 003265 443 WENVRRLSLMQNQI-ETLSEVPK-CPHLLTLFLDFNQEL--KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMS-E-- 515 (835)
Q Consensus 443 ~~~~r~l~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~-~-- 515 (835)
+.+++.|.+.++-- .++..... +++|++|+|++|... ..... .++.++.+.+..+ .+|...+ .
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~-------~I~~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMAN-------FVPAYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTT-------EECTTTTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccc-------ccCHHHhcccc
Confidence 44677777775421 11211222 788999999977644 23322 2333566666655 3444333 3
Q ss_pred ------hhhcccEEeeccccccccch-hhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcc
Q 003265 516 ------LGSSLQLFDISLTLIKELPE-ELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDS 588 (835)
Q Consensus 516 ------l~~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 588 (835)
+. +|+.|+|.+ .++.++. .|..+++|+.|++.+| .+..++.+.+..+.++.++...........
T Consensus 94 ~~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~------ 164 (329)
T 3sb4_A 94 NGVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK------ 164 (329)
T ss_dssp TTEEEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS------
T ss_pred cccccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc------
Confidence 56 999999988 8888865 4788999999999988 667888777888777777766532110000
Q ss_pred cccCCcccchHhhcCCCCCC-eEEEEecchhhHHHHhh-cccccccceeeecCCCCCCCcccccccccccccccceeccc
Q 003265 589 VLFGGGEVLVQELLGLKYLE-VLELTLGSYHALQILLS-SNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDR 666 (835)
Q Consensus 589 ~~~~~~~~~~~~l~~L~~L~-~L~l~~~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 666 (835)
.......+..+.+|+ .+.+. ....++.... ......++..+.+.+.-...... .....+++|++|++.+
T Consensus 165 -----~~i~~~~f~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 165 -----NRWEHFAFIEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFK--LIRDYMPNLVSLDISK 235 (329)
T ss_dssp -----TTTTTSCEEESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHH--HHHHHCTTCCEEECTT
T ss_pred -----ccccccccccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeecHHHHH--HHHHhcCCCeEEECCC
Confidence 000000122344454 33332 2222332221 11122445555555432111111 1112377889998886
Q ss_pred ccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc--hhhccCCcc-EEeeecCccchhhcccCccCCCcccc
Q 003265 667 AEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLK-SLSLYGCNAMEEIISVGKFDETPEVM 743 (835)
Q Consensus 667 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~~~~~ 743 (835)
+. ++.+....+. .+++|+.|+|.++ +..++ .+..+++|+ .|.+.+ .++.+..
T Consensus 236 n~-i~~I~~~aF~---------~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~----------- 290 (329)
T 3sb4_A 236 TN-ATTIPDFTFA---------QKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF----------- 290 (329)
T ss_dssp BC-CCEECTTTTT---------TCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------
T ss_pred CC-cceecHhhhh---------CCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------
Confidence 54 4545444443 4788999998875 66665 477889998 999976 4555543
Q ss_pred cCCCCCCcccEeecCCCCccccccCC-CCCCCCccEEE
Q 003265 744 GHISPFGNLQTLDLSRLPILKSIYWK-PLPFTHLKEMA 780 (835)
Q Consensus 744 ~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~ 780 (835)
..+.++++|+.|.+.+ .+++.++.. ...+++|+.+.
T Consensus 291 ~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 2667888999999866 467777653 33456666554
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=6.1e-08 Score=100.04 Aligned_cols=169 Identities=7% Similarity=0.046 Sum_probs=105.9
Q ss_pred cccchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC-----CCCeEEEEEecCccCHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPT-----NFDCVIWVVVSKDLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~~~~~~~~~~ 166 (835)
.+.||++++++|...|.. +..+.+.|+|++|+|||++|+.|++....... .| ..+.|++....+...++.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 478999999999877754 56778999999999999999999998721111 12 356777777778889999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHh---cCCcEEEEEcccCCcccccccccCC--CCCCCCCcEEEEEccchh---
Q 003265 167 DIGKKIGLVGDSWKSRSAEEKALDIFRSL---RGKRIVLLLDDIWERVDLTKVGVPL--PGPQNTTSKVVFTTRFID--- 238 (835)
Q Consensus 167 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~l~~~l--~~~~~~~s~IivTtR~~~--- 238 (835)
.|++++..... ...........+...+ .++++++|||+++...+-+.+...+ +........||.++...+
T Consensus 100 ~I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999964321 1122233344444443 4678999999996543212121111 101111223333343321
Q ss_pred --h----hhccCCCceEEeccCChHHHHHHHHHHhC
Q 003265 239 --V----CGSMEADRKFLVACLSEKDAWELFREKVG 268 (835)
Q Consensus 239 --v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 268 (835)
+ .+.++ ...+.+.+++.+|..+++.+++.
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 12221 25789999999999999988764
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=3.7e-07 Score=98.95 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=151.0
Q ss_pred CCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccc-hhhcCCCC
Q 003265 464 KCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELP-EELKKLVN 542 (835)
Q Consensus 464 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp-~~i~~L~~ 542 (835)
.+..++.+.+. +....++...|.++ +|+.+.|..+ +..++...+.-. +|+.+.+.. .++.++ ..+..+.+
T Consensus 111 ~~~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-----i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 111 ILKGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-----LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp ECSSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-----CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTT
T ss_pred ecCCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-----ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCccc
Confidence 34566666666 33336666667765 5777776553 555555544444 677777765 566664 45667777
Q ss_pred CcEEecccccccCCcchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchhhHHH
Q 003265 543 LKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYHALQI 622 (835)
Q Consensus 543 L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~ 622 (835)
|+.+++.+| .+..+|.+.+. .++|+.+.+..+ +..++ ...+..+++|+.+.+..
T Consensus 182 L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~---------------~~aF~~~~~L~~l~l~~-------- 235 (401)
T 4fdw_A 182 LKKADLSKT-KITKLPASTFV-YAGIEEVLLPVT-LKEIG---------------SQAFLKTSQLKTIEIPE-------- 235 (401)
T ss_dssp CCEEECTTS-CCSEECTTTTT-TCCCSEEECCTT-CCEEC---------------TTTTTTCTTCCCEECCT--------
T ss_pred CCeeecCCC-cceEechhhEe-ecccCEEEeCCc-hheeh---------------hhHhhCCCCCCEEecCC--------
Confidence 777777766 56777766554 467777777532 22111 11244455555555431
Q ss_pred HhhcccccccceeeecCCCCCCCcccccccccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCC
Q 003265 623 LLSSNRLKSCIRSLFLPLAGDATSIIDATAFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECH 702 (835)
Q Consensus 623 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 702 (835)
+++.+ . ...+.+ .+|+.+.+.. .++.+....+. .+++|+.+.+.++.
T Consensus 236 ---------~l~~I-----------~-~~aF~~-~~L~~i~lp~--~i~~I~~~aF~---------~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 236 ---------NVSTI-----------G-QEAFRE-SGITTVKLPN--GVTNIASRAFY---------YCPELAEVTTYGST 282 (401)
T ss_dssp ---------TCCEE-----------C-TTTTTT-CCCSEEEEET--TCCEECTTTTT---------TCTTCCEEEEESSC
T ss_pred ---------CccCc-----------c-cccccc-CCccEEEeCC--CccEEChhHhh---------CCCCCCEEEeCCcc
Confidence 11111 0 013333 4566666632 23433333332 47778888877653
Q ss_pred CC----CCCc--hhhccCCccEEeeecCccchhhcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCC-CCCCC
Q 003265 703 KL----KDLT--FLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKP-LPFTH 775 (835)
Q Consensus 703 ~l----~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~ 775 (835)
.. ..++ .+..+++|+.+.|.+ .++.+.. ..+.++++|+.+.|.+ +++.+.... ..+ +
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-----------~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ-----------GLLGGNRKVTQLTIPA--NVTQINFSAFNNT-G 346 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TTTTTCCSCCEEEECT--TCCEECTTSSSSS-C
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh-----------hhhcCCCCccEEEECc--cccEEcHHhCCCC-C
Confidence 21 1233 467888888888874 3555533 2566778888888854 466665533 345 8
Q ss_pred ccEEEEecCCCcCCCCCCCCCcc---cccceEEech--hhhhccCcccc
Q 003265 776 LKEMAVTHGCNQLRKLPLDSNSA---KERKFVIRGR--EDWWNRLQWED 819 (835)
Q Consensus 776 L~~L~i~~~C~~L~~lp~~~~~~---~l~~~~i~~~--~~~~~~l~w~~ 819 (835)
|+.+.+. + +.+..++.+.... .+..+.+... ..+...-.|++
T Consensus 347 L~~l~l~-~-n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~~a~~W~~ 393 (401)
T 4fdw_A 347 IKEVKVE-G-TTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNANGWRD 393 (401)
T ss_dssp CCEEEEC-C-SSCCBCCCSSCCCSCTTCCEEEECGGGHHHHHHSTTGGG
T ss_pred CCEEEEc-C-CCCcccccccccCCCCCccEEEeCHHHHHHhhhccchhh
Confidence 8888887 3 4666666543322 3455555532 33333444543
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=8e-08 Score=104.22 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=85.3
Q ss_pred ceEEEEeeeCCccccCCC--CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCch-Hhhhhhccc
Q 003265 445 NVRRLSLMQNQIETLSEV--PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVG-MSELGSSLQ 521 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~-i~~l~~~L~ 521 (835)
.++.+.+. +.+..++.. .++ +|+.+.+. ++...++...|.++ +|+.+.+.+ .+..++.. +..+. +|+
T Consensus 114 ~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~-~~i~~I~~~aF~~~-~L~~i~lp~-----~l~~I~~~aF~~c~-~L~ 183 (401)
T 4fdw_A 114 GYNEIILP-NSVKSIPKDAFRNS-QIAKVVLN-EGLKSIGDMAFFNS-TVQEIVFPS-----TLEQLKEDIFYYCY-NLK 183 (401)
T ss_dssp SCSEEECC-TTCCEECTTTTTTC-CCSEEECC-TTCCEECTTTTTTC-CCCEEECCT-----TCCEECSSTTTTCT-TCC
T ss_pred CccEEEEC-CccCEehHhhcccC-CccEEEeC-CCccEECHHhcCCC-CceEEEeCC-----CccEehHHHhhCcc-cCC
Confidence 34444443 334444332 444 68888887 33337888788885 688888875 35566544 45566 899
Q ss_pred EEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCc
Q 003265 522 LFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGT 576 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 576 (835)
.+++++|+++.+|.......+|+.+.+..+ +..++.+.+.++++|+.+.+..+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence 999999899999877666788999999754 78888888889999999998753
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.73 E-value=1.1e-07 Score=100.51 Aligned_cols=175 Identities=14% Similarity=0.094 Sum_probs=106.0
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
.++|++..++.+..++.. .....+.|+|++|+|||++|+.+++.. ... .+++.++......++...
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~--- 83 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAI--- 83 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHH---
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHH---
Confidence 689999999988887753 344678899999999999999999876 222 234443332222222111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc--cccccccCCC--------CC---------CCCCcEEE
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV--DLTKVGVPLP--------GP---------QNTTSKVV 231 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~--------~~---------~~~~s~Ii 231 (835)
+. .. ..++.+|+|||+.... ....+...+. .. ...+.++|
T Consensus 84 -l~-------------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 84 -LA-------------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -HT-------------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -HH-------------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 10 00 1355688899986431 1111110000 00 01245666
Q ss_pred EEccchh-hhhcc-C-CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHHHH
Q 003265 232 FTTRFID-VCGSM-E-ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGRAM 303 (835)
Q Consensus 232 vTtR~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~~l 303 (835)
.||.... +...+ . ....+.+.+++.++..+++.+.+.......+ .+....+++.++|+|-.+..+...+
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6665432 21111 1 1357899999999999999887754332222 3667888999999998887766554
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.70 E-value=1.1e-07 Score=100.28 Aligned_cols=180 Identities=12% Similarity=0.119 Sum_probs=113.4
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-eEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++... ...+. ..+.++.+......
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~------------ 83 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID------------ 83 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT------------
T ss_pred HHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH------------
Confidence 6899999999999988876665699999999999999999998751 11111 12333433321100
Q ss_pred CCCCCCCCCHHHHHHHHHHH--h-cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh-hhh-ccCCCc
Q 003265 175 VGDSWKSRSAEEKALDIFRS--L-RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID-VCG-SMEADR 247 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~-~~~~~~ 247 (835)
........+... + .+++.++|+||++.. .....+...+. ....++++|+||.... +.. ......
T Consensus 84 --------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 --------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp --------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred --------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 011111111111 1 256889999999643 33444555554 3445677887776543 211 112345
Q ss_pred eEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHHH
Q 003265 248 KFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIGR 301 (835)
Q Consensus 248 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~~ 301 (835)
.+.+.+++.++..+++.+.+.......+ .+....+++.++|.+..+.....
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999887754432222 35677888999999986554433
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.64 E-value=1.9e-07 Score=100.94 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=110.5
Q ss_pred cccchHHHHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh--
Q 003265 96 KVVGLQSQLEQVWTCLVEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI-- 172 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-- 172 (835)
.++|++..++.+.+.+..+. .+.+.|+|++|+||||+|+.+++.. .....+.. ..+... .....+...-
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~---~~~~~~----~~~~~~~~~~~~ 88 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA---TPCGVC----DNCREIEQGRFV 88 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSCS---SCCSSS----HHHHHHHTSCCS
T ss_pred hccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCCC---CCCccc----HHHHHHhccCCC
Confidence 68999999999999987754 3578899999999999999999876 21111100 000000 0011111100
Q ss_pred ---CCCCC-CCCCCCHHHHHHHHHHH-hcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh-hh-hcc
Q 003265 173 ---GLVGD-SWKSRSAEEKALDIFRS-LRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID-VC-GSM 243 (835)
Q Consensus 173 ---~~~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~-~~~ 243 (835)
..... .............+... ..+++.++|+||+... .....+...+. ....+..+|++|.... +. ...
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEESCGGGSCHHHH
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeCChHhCcHHHH
Confidence 00000 00111222222221110 1356789999999642 23444443333 3334566777665432 21 112
Q ss_pred CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 244 EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 244 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
.....+.+.+++.++..+++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 23468899999999999999877643221122 3567789999999998877654
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.62 E-value=5.4e-08 Score=104.06 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=56.7
Q ss_pred EEeccCCcc-cccchhhcCCCcceEEEeec-CCCCccccccCc-hHhhhhhcccEEeeccccccccch-hhcCCCCCcEE
Q 003265 471 LFLDFNQEL-KIADGFFQFMPSLKVLKMSY-CGQSWSSFQLPV-GMSELGSSLQLFDISLTLIKELPE-ELKKLVNLKCL 546 (835)
Q Consensus 471 L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~-~~~~~~i~~lp~-~i~~l~~~L~~L~L~~~~i~~Lp~-~i~~L~~L~~L 546 (835)
+++++++.+ .+|. +..+++|++|+|++ | .+..+|. .++.+. +|++|+|++|.|+.+|. .|.+|++|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n----~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQ----HLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCS----SCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCC----CCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 345533233 5554 55666666666664 5 5555553 355565 66666666666666543 45666666666
Q ss_pred ecccccccCCcchHHhccCcccceeeecCcCcc
Q 003265 547 NLRWAYRLNKIPRQLISNYSRLCVLRMFGTGWF 579 (835)
Q Consensus 547 ~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 579 (835)
+|++| .+..+|.+.+..++ |++|++.+|.+.
T Consensus 86 ~l~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66666 55666655344444 666666655543
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.56 E-value=1.3e-08 Score=109.29 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=91.5
Q ss_pred ceEEEEeeeCCccccC-----CC--CCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecCCCCccccccC-chHh-
Q 003265 445 NVRRLSLMQNQIETLS-----EV--PKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYCGQSWSSFQLP-VGMS- 514 (835)
Q Consensus 445 ~~r~l~l~~~~~~~l~-----~~--~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp-~~i~- 514 (835)
.++.+++.+|.+.... .. ..+++|++|++++|... .....+...+++|+.|+|++| .++... ..++
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n----~l~~~~~~~L~~ 148 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN----SLGPEACKDLRD 148 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS----CCCHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC----CCCHHHHHHHHH
Confidence 5667777777765421 11 23467888888866533 222233445567888888888 554321 1222
Q ss_pred ----hhhhcccEEeeccccccc-----cchhhcCCCCCcEEecccccccCC-----cchHHhccCcccceeeecCcCccC
Q 003265 515 ----ELGSSLQLFDISLTLIKE-----LPEELKKLVNLKCLNLRWAYRLNK-----IPRQLISNYSRLCVLRMFGTGWFN 580 (835)
Q Consensus 515 ----~l~~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~ 580 (835)
... +|++|+|++|.|+. ++..+..+++|++|+|++| .+.. ++.. +...++|++|++++|.+..
T Consensus 149 ~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 149 LLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCH
T ss_pred HHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCH
Confidence 123 68888888887654 4555667777888888877 3433 2232 5666778888888776653
Q ss_pred cccCCCcccccCCcccchHhhcCCCCCCeEEEEecchh
Q 003265 581 FHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 618 (835)
.+. ......+...++|+.|+++.|...
T Consensus 226 ~g~-----------~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 TAA-----------LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHH-----------HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHH-----------HHHHHHHHhCCCCCEEeccCCCCC
Confidence 111 112334455667777777766543
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.55 E-value=9.7e-08 Score=92.33 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 23 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999988767788999999999999999999876
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=4.8e-08 Score=104.90 Aligned_cols=136 Identities=14% Similarity=0.092 Sum_probs=83.6
Q ss_pred CCcceEEEeccCCcccccchhh----c-CCCcceEEEeecCCCCccccc--cCchHhhhhhcccEEeecccccccc----
Q 003265 465 CPHLLTLFLDFNQELKIADGFF----Q-FMPSLKVLKMSYCGQSWSSFQ--LPVGMSELGSSLQLFDISLTLIKEL---- 533 (835)
Q Consensus 465 ~~~L~~L~l~~~~~~~~~~~~~----~-~l~~Lr~L~Ls~~~~~~~i~~--lp~~i~~l~~~L~~L~L~~~~i~~L---- 533 (835)
.+.|++|++++|.........+ . ..++|+.|+|++| .+.. +..-...+. +|++|+|++|.+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n----~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC----QLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC----CCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC----CCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHH
Confidence 4678889998776432221112 2 3368999999998 5543 222223455 889999999877643
Q ss_pred -chhh-cCCCCCcEEecccccccCC-----cchHHhccCcccceeeecCcCccCcccCCCcccccCCcccchHhhcCCCC
Q 003265 534 -PEEL-KKLVNLKCLNLRWAYRLNK-----IPRQLISNYSRLCVLRMFGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKY 606 (835)
Q Consensus 534 -p~~i-~~L~~L~~L~L~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 606 (835)
...+ ....+|++|+|++| .+.. ++.. +..+++|++|++++|.+...+. ......+...++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g~-----------~~L~~~L~~~~~ 212 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEGL-----------ELLAAQLDRNRQ 212 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHHH-----------HHHHHHGGGCSC
T ss_pred HHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHHH-----------HHHHHHHhcCCC
Confidence 2223 24678899999888 4543 3332 5678888888888887653111 112334556667
Q ss_pred CCeEEEEecchh
Q 003265 607 LEVLELTLGSYH 618 (835)
Q Consensus 607 L~~L~l~~~~~~ 618 (835)
|+.|+++.|...
T Consensus 213 L~~L~Ls~N~i~ 224 (372)
T 3un9_A 213 LQELNVAYNGAG 224 (372)
T ss_dssp CCEEECCSSCCC
T ss_pred cCeEECCCCCCC
Confidence 777777766544
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2e-07 Score=99.67 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=84.0
Q ss_pred EEEeeeC-CccccCCCCCCCcceEEEeccCCcc-cccchhhcCCCcceEEEeecCCCCccccccCc-hHhhhhhcccEEe
Q 003265 448 RLSLMQN-QIETLSEVPKCPHLLTLFLDFNQEL-KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPV-GMSELGSSLQLFD 524 (835)
Q Consensus 448 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~-~i~~l~~~L~~L~ 524 (835)
.++..++ .+..+|....+++|+.|+|++++.+ .+++..|.++++|++|+|++| .+..+|+ .++.+. +|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N----~l~~~~~~~~~~l~-~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS----GLRFVAPDAFHFTP-RLSRLN 86 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS----CCCEECTTGGGSCS-CCCEEE
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC----ccceeCHHHhcCCc-CCCEEe
Confidence 3456666 7777877778889999999963445 888888999999999999999 8888765 567888 999999
Q ss_pred eccccccccchhhcCCCCCcEEecccccccCC
Q 003265 525 ISLTLIKELPEELKKLVNLKCLNLRWAYRLNK 556 (835)
Q Consensus 525 L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~ 556 (835)
|++|+|+.+|..+....+|++|+|.+| .+..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N-~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGN-PLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSS-CCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCC-CccC
Confidence 999999999877655555999999998 4443
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.47 E-value=1.4e-07 Score=95.05 Aligned_cols=172 Identities=7% Similarity=0.054 Sum_probs=101.8
Q ss_pred cccch---HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHh
Q 003265 96 KVVGL---QSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKI 172 (835)
Q Consensus 96 ~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 172 (835)
.++|. +..++.+..++.....+.+.|+|++|+||||+|+.+++... . ....+.|+.++...+. +...+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~-~--~~~~~~~~~~~~~~~~------~~~~~ 99 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN-E--LERRSFYIPLGIHASI------STALL 99 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH-H--TTCCEEEEEGGGGGGS------CGGGG
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEEHHHHHHH------HHHHH
Confidence 56663 35566666666555678899999999999999999999872 1 2234567766442210 00000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc----ccccccCCCCCCCCC-cEEEEEccchh---------
Q 003265 173 GLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD----LTKVGVPLPGPQNTT-SKVVFTTRFID--------- 238 (835)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~~~~~~-s~IivTtR~~~--------- 238 (835)
+.+ .++.+|||||++.... ...+...+......+ .++|+||+...
T Consensus 100 --------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 100 --------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp --------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred --------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 011 3467999999964311 222222211001112 24777776422
Q ss_pred hhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 239 VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 239 v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
+...+.....+.+.+++.++..+++.+.+.......+ .+..+.+++.++|.+-.+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 1111122267899999999999999887753322222 3567788889999987766543
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=1.1e-06 Score=96.38 Aligned_cols=183 Identities=16% Similarity=0.120 Sum_probs=104.9
Q ss_pred ccc-chHH--HHHHHHHHhhcCC-ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVV-GLQS--QLEQVWTCLVEES-AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~v-Gr~~--~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.|+ |... ....+........ ...+.|+|++|+||||||+.+++... ....-..++++++. .+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~-~~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH-HHCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeHH------HHHHHHHHH
Confidence 455 6433 3334444443333 67899999999999999999998761 11111234555443 233444444
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc----cccccccCCCCCCCCCcEEEEEccchh---------
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV----DLTKVGVPLPGPQNTTSKVVFTTRFID--------- 238 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~l~~~l~~~~~~~s~IivTtR~~~--------- 238 (835)
+... . ...+...++.++-+|+|||+.... ..+.+...+......|..||+||....
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 3221 1 122334444467899999996432 122222222101234667888887521
Q ss_pred hhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 239 VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 239 v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+...+.....+.+++++.++..+++.+.+.......++ +....|++.++|.+-.+..+
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 22333334578899999999999998877432222222 44667888899988655443
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.35 E-value=5.4e-06 Score=90.61 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=104.4
Q ss_pred cccchHHHH---HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHH
Q 003265 96 KVVGLQSQL---EQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~ 171 (835)
.++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ...| +.++.. .....+ +.++.
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~i-r~~~~- 96 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKEI-REAIE- 96 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHHH-HHHHH-
T ss_pred HhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHHH-HHHHH-
Confidence 689999888 778888888888889999999999999999999986 2222 222221 112211 11111
Q ss_pred hCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE-Eccchh--h-hhccC
Q 003265 172 IGLVGDSWKSRSAEEKALDIF-RSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF-TTRFID--V-CGSME 244 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv-TtR~~~--v-~~~~~ 244 (835)
... ....+++.+|+||++... ...+.+...+. .+ ...+|. ||.+.. + .....
T Consensus 97 ------------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le--~~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 97 ------------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE--DG-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp ------------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHH--TT-SCEEEEEESSCGGGSSCHHHHT
T ss_pred ------------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh--cC-ceEEEecCCCCcccccCHHHhC
Confidence 111 112467899999999643 23344443333 22 233443 555432 1 11223
Q ss_pred CCceEEeccCChHHHHHHHHHHhCCCCc----CCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 245 ADRKFLVACLSEKDAWELFREKVGEETL----KSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 245 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
....+.+.+++.++...++.+.+..... ....--.+..+.|++.++|.+-.+..+.
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3457889999999999999887653110 0011124567778888999886555443
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=2.2e-06 Score=96.30 Aligned_cols=188 Identities=13% Similarity=0.064 Sum_probs=107.1
Q ss_pred cccchHHHHHHHHHHhhc-----------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc
Q 003265 96 KVVGLQSQLEQVWTCLVE-----------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 158 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 158 (835)
.++|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++.. . + .++.++++..
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASDV 113 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTSC
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCCc
Confidence 689999999999999864 134789999999999999999999986 1 2 2345555544
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc-----ccccccCCCCCCCCCcEEEEE
Q 003265 159 LRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD-----LTKVGVPLPGPQNTTSKVVFT 233 (835)
Q Consensus 159 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----~~~l~~~l~~~~~~~s~IivT 233 (835)
.... +....+........ ...-...... .....+++.+||||++..... +..+...+. . .+..||++
T Consensus 114 ~~~~-~~~~~i~~~~~~~~--~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~-~~~~iIli 185 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS--VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--K-TSTPLILI 185 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC--STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--H-CSSCEEEE
T ss_pred chHH-HHHHHHHHHhcccc--HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--h-cCCCEEEE
Confidence 3332 22222222211100 0000000000 001235788999999964311 122222221 1 22335555
Q ss_pred ccchh---hhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHHH
Q 003265 234 TRFID---VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITIG 300 (835)
Q Consensus 234 tR~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~ 300 (835)
+.... +.........+.+.+++.++..+++.+.+.......++ +....|++.++|. +-++..+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 44322 22222335678999999999999988766433322222 3567788889995 45555543
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.34 E-value=2.2e-06 Score=88.56 Aligned_cols=176 Identities=22% Similarity=0.227 Sum_probs=102.0
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.++|.+..+++|.+.+.. ...+.+.|+|++|+|||+||+.+++.. ... .+.+..+.-..
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~~-- 89 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELVK-- 89 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGCC--
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHHH--
Confidence 689999999999887742 345679999999999999999999986 222 22333222110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHH-HHHHhcCCcEEEEEcccCCcc----------------cccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALD-IFRSLRGKRIVLLLDDIWERV----------------DLTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~-~~ 224 (835)
. ........... +......++.+|+|||+.... .+..+...+.. ..
T Consensus 90 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 ------------K----FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp ------------C----STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred ------------h----ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 00111222222 223335677899999995320 01111111100 12
Q ss_pred CCCcEEEEEccchhhhh-----ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCC-cchHHHH
Q 003265 225 NTTSKVVFTTRFIDVCG-----SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVG-LPLALIT 298 (835)
Q Consensus 225 ~~~s~IivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~ 298 (835)
..+..||.||....... ...-...+.+...+.++..+++...+.........+ ...+++.+.| .|-.+..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 33567777887543211 111234688999999999999998876544322223 3455666776 4545544
Q ss_pred H
Q 003265 299 I 299 (835)
Q Consensus 299 ~ 299 (835)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=1.3e-06 Score=93.35 Aligned_cols=191 Identities=14% Similarity=0.167 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC-CeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.. .....+ .....+..+.......+. +....+..
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 115 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL-YGPDLMKSRILELNASDERGISIVR-EKVKNFAR 115 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH-HHHHHHTTSEEEECSSSCCCHHHHT-THHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh-CCCcccccceEEEccccccchHHHH-HHHHHHhh
Confidence 689999999999999987755558999999999999999998875 110001 123334444332322222 22211111
Q ss_pred CCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh-hhhc-cCCCceE
Q 003265 175 VGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID-VCGS-MEADRKF 249 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~~-~~~~~~~ 249 (835)
.... ..... ..... .+++-+|++|++... .....+...+. ......++|++|.... +... ......+
T Consensus 116 ~~~~-~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 116 LTVS-KPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp SCCC-CCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hccc-ccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCceE
Confidence 0000 00000 00111 235579999998543 22233333332 2233466777664432 2111 1123478
Q ss_pred EeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 250 LVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 250 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
.+.+++.++....+.+.+.......+ .+..+.|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999887754332222 357788999999999865444
No 173
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.28 E-value=4.1e-06 Score=87.69 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=86.8
Q ss_pred cccchHHHHHHHHHHhh---------------cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 96 KVVGLQSQLEQVWTCLV---------------EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.. .........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHH--
Confidence 47899888888876653 2344578999999999999999988876 22222221223333211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc-----------ccccccccCCCCCCCCCcE
Q 003265 161 LEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER-----------VDLTKVGVPLPGPQNTTSK 229 (835)
Q Consensus 161 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~~~s~ 229 (835)
.+... ... ........+.... +.-+|+||++... .....+...+. ....+..
T Consensus 109 ----------~l~~~---~~g-~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~ 171 (309)
T 3syl_A 109 ----------DLVGQ---YIG-HTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDDLV 171 (309)
T ss_dssp ----------GTCCS---STT-CHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTTCE
T ss_pred ----------Hhhhh---ccc-ccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCCEE
Confidence 11000 011 1111122222222 3459999999632 11223333332 3344567
Q ss_pred EEEEccchhh----------hhccCCCceEEeccCChHHHHHHHHHHhCC
Q 003265 230 VVFTTRFIDV----------CGSMEADRKFLVACLSEKDAWELFREKVGE 269 (835)
Q Consensus 230 IivTtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 269 (835)
||.||..... ... ....+.+.+++.++..+++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 8888764321 222 1267899999999999999887653
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=3.4e-06 Score=90.26 Aligned_cols=194 Identities=8% Similarity=0.067 Sum_probs=103.9
Q ss_pred cccchHHHHHHHHHHh-hcCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-C--CCCe--------------------EE
Q 003265 96 KVVGLQSQLEQVWTCL-VEESAGIIGLYGMGGVGKTTLLTHINNKFLESP-T--NFDC--------------------VI 151 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~f~~--------------------~~ 151 (835)
.++|++..++.+.+++ ..+..+.+.|+|+.|+||||+|+.++....... + .++. .+
T Consensus 15 ~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHL 94 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEE
T ss_pred HhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceE
Confidence 6899999999998888 655544499999999999999999988541111 1 0110 11
Q ss_pred EEEecCcc-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCc
Q 003265 152 WVVVSKDL-RLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTS 228 (835)
Q Consensus 152 wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s 228 (835)
.+..+... ......++++..+..... ..... .+ ..+.+++-++|||++... .....+...+. ....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le-~~~~~~ 165 (354)
T 1sxj_E 95 EITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME-KYSKNI 165 (354)
T ss_dssp EECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHH-HSTTTE
T ss_pred EecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH-hhcCCC
Confidence 11111100 000012222222211000 00000 00 002346779999999652 12223333332 223356
Q ss_pred EEEEEccch-hhhh-ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 229 KVVFTTRFI-DVCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 229 ~IivTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
.+|++|... .+.. ..+....+.+.+++.++..+.+.+.+.......+. .+....|++.++|.+-.+..+.
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 777777653 2211 11234789999999999999998876433211110 2566788889999986655543
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.21 E-value=4.1e-05 Score=77.79 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=99.0
Q ss_pred cccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++.. ... .+.+.++.-.+.
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS--
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh--
Confidence 68999988877766542 1 234568899999999999999999987 222 233444332110
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc-------------c----ccccccCCCC-CCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV-------------D----LTKVGVPLPG-PQN 225 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~l~~~l~~-~~~ 225 (835)
. ...........+.......+.+|+|||++... . +..+...+.. ...
T Consensus 79 --------~-------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 79 --------I-------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp --------S-------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred --------c-------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 00111112222233334568999999996430 0 1111111110 122
Q ss_pred CCcEEEEEccchhh-hhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHH
Q 003265 226 TTSKVVFTTRFIDV-CGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITI 299 (835)
Q Consensus 226 ~~s~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 299 (835)
.+..||.||..... .... .-...+.+...+.++-.+++...+....... ........+++.+.|.+- .|..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 35566667755432 1111 1235778999999999999988764333211 122345778888888754 44444
No 176
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=2.3e-06 Score=90.93 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=18.6
Q ss_pred CCCccEEeEecCCCCCC-----Cc-hhhccCCccEEeeecCc
Q 003265 690 FRSLHLVAIYECHKLKD-----LT-FLVFAPSLKSLSLYGCN 725 (835)
Q Consensus 690 ~~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~ 725 (835)
+++|+.|+|+.| .+.+ ++ .+..+++|+.|+|++|.
T Consensus 278 ~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 556666666554 3443 11 23455666666666553
No 177
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.20 E-value=7.2e-06 Score=88.19 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=100.9
Q ss_pred cccchHHHHHH---HHHHhhcCCc--eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC----ccCHHHHHH
Q 003265 96 KVVGLQSQLEQ---VWTCLVEESA--GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK----DLRLEKLQE 166 (835)
Q Consensus 96 ~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~----~~~~~~~~~ 166 (835)
.++|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++.. . .... .+.+.... .....+...
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-G--PDTP-FTAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-C--SSCC-EEEEEGGGGSCSSSCHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-c--ccCC-cccccchhhhhcccchhHHHH
Confidence 68999988776 4445554433 589999999999999999999987 2 2111 12222211 222333333
Q ss_pred HHHHHhCCC---------------------CC-------CCCCCCHHHHHHHHHHHh-----cCC----cEEEEEcccCC
Q 003265 167 DIGKKIGLV---------------------GD-------SWKSRSAEEKALDIFRSL-----RGK----RIVLLLDDIWE 209 (835)
Q Consensus 167 ~i~~~l~~~---------------------~~-------~~~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~~ 209 (835)
+........ .. .............+.... .++ +.+|+||++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 333221100 00 000000111222221111 233 45999999964
Q ss_pred c--ccccccccCCCCCCCCCcEEEEEcc-c------------hhhh-hccCCCceEEeccCChHHHHHHHHHHhCCCCcC
Q 003265 210 R--VDLTKVGVPLPGPQNTTSKVVFTTR-F------------IDVC-GSMEADRKFLVACLSEKDAWELFREKVGEETLK 273 (835)
Q Consensus 210 ~--~~~~~l~~~l~~~~~~~s~IivTtR-~------------~~v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 273 (835)
. .....+...+. ..... .++++|. . ..+. ....-...+.+.+++.++..+++.+.+......
T Consensus 201 l~~~~~~~L~~~le-~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 201 LDIESFSFLNRALE-SDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp SBHHHHHHHHHHTT-CTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHhh-CcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3 22233333332 22222 3444442 1 1111 111123458999999999999999877543322
Q ss_pred CChhHHHHHHHHHHHcC-CcchHHHHH
Q 003265 274 SDHDIAELAQIVAKECV-GLPLALITI 299 (835)
Q Consensus 274 ~~~~~~~~~~~i~~~c~-GlPlai~~~ 299 (835)
.+ .+....|++.+. |.|-.+..+
T Consensus 279 ~~---~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 MS---EDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp BC---HHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC---HHHHHHHHHHhcCCCHHHHHHH
Confidence 22 356777888887 777655444
No 178
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=1.4e-05 Score=86.69 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=56.5
Q ss_pred CCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhcccEEeeccc-------------
Q 003265 463 PKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSSLQLFDISLT------------- 528 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~L~~L~L~~~------------- 528 (835)
.+|.+|+++.+. ++...++..+|.++.+|+.++|.++ +..++... ..+. +|+.+.+..+
T Consensus 68 ~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~c~-~L~~i~~p~~l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 68 QGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-----VKMIGRCTFSGCY-ALKSILLPLMLKSIGVEAFKGCD 140 (394)
T ss_dssp TTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-----CCEECTTTTTTCT-TCCCCCCCTTCCEECTTTTTTCC
T ss_pred hCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-----ceEccchhhcccc-cchhhcccCceeeecceeeeccc
Confidence 566677777665 3222566666777777777766543 33333222 2222 4444333221
Q ss_pred --------ccccc-chhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecC
Q 003265 529 --------LIKEL-PEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFG 575 (835)
Q Consensus 529 --------~i~~L-p~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 575 (835)
.+..+ ...+.++.+|+.+.+.++ +..++.+.+.++.+|+.+.+..
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 11111 123556777777777654 4566666677777777777754
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.15 E-value=2.5e-05 Score=82.36 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCC-------------------CCCeEEEEEecCcc
Q 003265 100 LQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPT-------------------NFDCVIWVVVSKDL 159 (835)
Q Consensus 100 r~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~s~~~ 159 (835)
.++..+.+.+.+..+.. +.+.++|+.|+|||++|+.+++....... +++ ..++....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~-- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK-- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc--
Confidence 35556777777776654 57999999999999999999987621110 122 22222210
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEE
Q 003265 160 RLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-----RGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVF 232 (835)
Q Consensus 160 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~Iiv 232 (835)
.......++. ..+.+.+ .+++-++|+|+++.. .....+...+. ....++.+|+
T Consensus 84 ------------------~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il 143 (334)
T 1a5t_A 84 ------------------GKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFL 143 (334)
T ss_dssp ------------------TCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEE
T ss_pred ------------------cCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEE
Confidence 0011122221 2222222 256789999999653 23344444443 3344567666
Q ss_pred Eccchh-hhh-ccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 233 TTRFID-VCG-SMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 233 TtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+|.+.. +.. ..+....+.+.+++.++..+.+.+... .+ .+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 665542 322 123356899999999999999988751 11 245677889999999766543
No 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1e-06 Score=81.93 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=43.3
Q ss_pred cccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCC--Cchhhcc----CCccEEeeecCccchhhc
Q 003265 658 HLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKD--LTFLVFA----PSLKSLSLYGCNAMEEII 731 (835)
Q Consensus 658 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l----~~L~~L~L~~~~~l~~~~ 731 (835)
+|++|++++|. +.+..+..+. .+++|+.|+|++|..+++ +..+..+ ++|++|+|++|..+++..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~---------~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME---------GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT---------TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhc---------CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 46666666654 3322222221 356666666666655544 2223332 356666666665555431
Q ss_pred ccCccCCCcccccCCCCCCcccEeecCCCCcccc
Q 003265 732 SVGKFDETPEVMGHISPFGNLQTLDLSRLPILKS 765 (835)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 765 (835)
- ..+..+++|+.|+|++|+.++.
T Consensus 132 l-----------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 I-----------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H-----------HHGGGCTTCCEEEEESCTTCCC
T ss_pred H-----------HHHhcCCCCCEEECCCCCCCCc
Confidence 1 1233456666666666655543
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.14 E-value=4.3e-05 Score=81.32 Aligned_cols=179 Identities=14% Similarity=0.085 Sum_probs=103.1
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.+.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.+.++.-..
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS--- 155 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC---
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc---
Confidence 689999999998887742 345688999999999999999999876 22 233444432211
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEcccCCcc-------------cccccccCCC---CCCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRS-LRGKRIVLLLDDIWERV-------------DLTKVGVPLP---GPQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~---~~~~~ 226 (835)
. ...........+... -..++.+|+||++.... ....+...+. .....
T Consensus 156 -----------~----~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 -----------K----WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp -----------S----STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred -----------c----ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 001112222222222 24578899999994320 0111211111 01223
Q ss_pred CcEEEEEccchh-hhhcc--CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCC-cchHHHHHHH
Q 003265 227 TSKVVFTTRFID-VCGSM--EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVG-LPLALITIGR 301 (835)
Q Consensus 227 ~s~IivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~~~ 301 (835)
+..||.||.... +...+ .....+.+...+.++..+++...+........ .+....|++.+.| .+-.|..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455665665432 21111 22356788889999999998877644321111 3566778888988 4555655543
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.13 E-value=0.00014 Score=76.00 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=102.6
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++.. . .. ..+.+..+.-..
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS--- 84 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC---
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh---
Confidence 678999988888776631 234678999999999999999999976 1 11 123333332110
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCccc-------------ccccccCCCC--CCCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERVD-------------LTKVGVPLPG--PQNTT 227 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~--~~~~~ 227 (835)
. ..... +.....+.. .-..++.+|+||+++.... ...+...+.. ....+
T Consensus 85 -----------~---~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 -----------K---WLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -----------S---SCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -----------h---hhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 0 01112 222333333 3346789999999964310 0111111110 12334
Q ss_pred cEEEEEccchh-hhhcc--CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHHH
Q 003265 228 SKVVFTTRFID-VCGSM--EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITIG 300 (835)
Q Consensus 228 s~IivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~ 300 (835)
..||.||.... +...+ .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55665665432 11111 23457888999999999999888764432111 34567788889887 44455554
No 183
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.3e-05 Score=84.91 Aligned_cols=178 Identities=13% Similarity=0.151 Sum_probs=102.8
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC-eEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|.+..++.+...+..+..+.+.++|++|+||||+|+.++.... ...+. .+.-++.+.......+. +++..+..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir-~~i~~~~~ 102 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVR-NQIKDFAS 102 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHH-THHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHH-HHHHHHHh
Confidence 5789999999998888877665589999999999999999998861 11111 12222222221222111 11111100
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccchh-hhh-ccCCCceEE
Q 003265 175 VGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFID-VCG-SMEADRKFL 250 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~-~~~~~~~~~ 250 (835)
.. ....+.+-++|+|++... .....+...+. .....+++|++|.... +.. ..+....+.
T Consensus 103 ~~----------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~sR~~~~~ 165 (340)
T 1sxj_C 103 TR----------------QIFSKGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALLSQCTRFR 165 (340)
T ss_dssp BC----------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hc----------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHHhhceeEe
Confidence 00 001234678999998542 22333333332 2234556666665432 211 112245789
Q ss_pred eccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHH
Q 003265 251 VACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLAL 296 (835)
Q Consensus 251 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 296 (835)
+.+++.++..+.+.+.+.......+ .+..+.|++.++|.+--+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 166 FQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 9999999999988877643332222 356778888899987643
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.12 E-value=2e-05 Score=80.57 Aligned_cols=166 Identities=17% Similarity=0.147 Sum_probs=89.3
Q ss_pred cccchHHHHHHHHH-------Hhh---cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHH
Q 003265 96 KVVGLQSQLEQVWT-------CLV---EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQ 165 (835)
Q Consensus 96 ~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 165 (835)
.++|.+..+++++. .+. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~------ 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM------ 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh------
Confidence 56777766665555 332 2455789999999999999999999976 2222 222222210
Q ss_pred HHHHHHhCCCCCCCCCCCH-HHHHHHHHHHhcCCcEEEEEcccCCc-----------c-cccccccCCCC--CCCCCcEE
Q 003265 166 EDIGKKIGLVGDSWKSRSA-EEKALDIFRSLRGKRIVLLLDDIWER-----------V-DLTKVGVPLPG--PQNTTSKV 230 (835)
Q Consensus 166 ~~i~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~-~~~~l~~~l~~--~~~~~s~I 230 (835)
++. ..... ......+......++.+|+|||+... . ....+...+.. .......|
T Consensus 102 ------~g~-----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 ------IGF-----SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ------TTC-----CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ------cCC-----chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 00000 11112222333467889999998542 0 11222222210 12233456
Q ss_pred EEEccchhhhhc---cCC-CceEEeccCCh-HHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 231 VFTTRFIDVCGS---MEA-DRKFLVACLSE-KDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 231 ivTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
|.||........ .+. ...+.+++++. ++...++.+... .+ .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCC
Confidence 777776643222 111 45688899988 666666665321 11 34566777788773
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.09 E-value=1.3e-05 Score=84.42 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=93.0
Q ss_pred HHHHHHHhhcC--CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCC
Q 003265 104 LEQVWTCLVEE--SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKS 181 (835)
Q Consensus 104 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 181 (835)
...+...+... ....+.|+|++|+||||||+.+++... .. .. .++++++. .+...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~-~~-~~-~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK-KR-GY-RVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH-HT-TC-CEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH-HC-CC-EEEEEEHH------HHHHHHHHHHHcC------
Confidence 34444544443 346789999999999999999999862 11 22 24555433 2333333333210
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEcccCCccc----ccccccCCCCCCCCCcEEEEEccchh---------hhhccCCCce
Q 003265 182 RSAEEKALDIFRSLRGKRIVLLLDDIWERVD----LTKVGVPLPGPQNTTSKVVFTTRFID---------VCGSMEADRK 248 (835)
Q Consensus 182 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~l~~~l~~~~~~~s~IivTtR~~~---------v~~~~~~~~~ 248 (835)
... .+...+. ++-+|+|||+..... ...+...+......+..||+|+.... +...+.....
T Consensus 88 -~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 -TIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp -CHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred -cHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 111 1222222 367999999954321 12222222101123557888775421 2222333357
Q ss_pred EEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchH
Q 003265 249 FLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLA 295 (835)
Q Consensus 249 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 295 (835)
+.+++ +.++..+++...+.......+ .+....|++.+ |..-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 89999 999999999887753332222 35567788888 77644
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.06 E-value=9.8e-05 Score=76.54 Aligned_cols=176 Identities=16% Similarity=0.164 Sum_probs=101.0
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.+.+.+.. ...+.+.|+|++|+|||++|+.+++.. ... .+.+.++.-..
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SAT---FLNISAASLTS--- 92 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCE---EEEEESTTTSS---
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEeeHHHHhh---
Confidence 689999999998887632 235688999999999999999999876 222 23333332110
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCcccc-------------cccc---cCCCC-CCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERVDL-------------TKVG---VPLPG-PQN 225 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~-------------~~l~---~~l~~-~~~ 225 (835)
. ...........+.. ....++.+|+||++.....- ..+. ..++. ..+
T Consensus 93 -----------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -----------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -----------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -----------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 01122333333332 33467889999999542110 0011 11110 112
Q ss_pred CCcEEEEEccchh-----hhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHH
Q 003265 226 TTSKVVFTTRFID-----VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITI 299 (835)
Q Consensus 226 ~~s~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 299 (835)
.+..||.||.... +... -...+.+...+.++...++...+........ .+....+++.+.|.+- ++..+
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 3455666776532 2222 2356777888888888888776643321111 3456778888999875 55444
Q ss_pred H
Q 003265 300 G 300 (835)
Q Consensus 300 ~ 300 (835)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.2e-06 Score=79.76 Aligned_cols=88 Identities=8% Similarity=0.101 Sum_probs=68.2
Q ss_pred CCCccEEeEecCCCCCC--CchhhccCCccEEeeecCccchhhcccCccCCCcccccCCCC----CCcccEeecCCCCcc
Q 003265 690 FRSLHLVAIYECHKLKD--LTFLVFAPSLKSLSLYGCNAMEEIISVGKFDETPEVMGHISP----FGNLQTLDLSRLPIL 763 (835)
Q Consensus 690 ~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l 763 (835)
-.+|+.|+|++|. +++ +..+..+++|+.|+|++|..+++..- ..+.. .++|+.|+|++|+++
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTC
T ss_pred CceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcC
Confidence 3579999999995 665 44678999999999999998876421 02222 368999999999988
Q ss_pred ccccC-CCCCCCCccEEEEecCCCcCCC
Q 003265 764 KSIYW-KPLPFTHLKEMAVTHGCNQLRK 790 (835)
Q Consensus 764 ~~l~~-~~~~~~~L~~L~i~~~C~~L~~ 790 (835)
+.-.. ....+++|+.|+++ +|++++.
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~-~c~~Itd 154 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLS-DLPGVKE 154 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEE-SCTTCCC
T ss_pred CHHHHHHHhcCCCCCEEECC-CCCCCCc
Confidence 76332 12358999999999 9999986
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=2e-05 Score=82.99 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=100.1
Q ss_pred cccchHHHHHHHHHHhhcCCc-eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC
Q 003265 96 KVVGLQSQLEQVWTCLVEESA-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL 174 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 174 (835)
.++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++.. . ...+.++.+.. .... .+.++.....
T Consensus 27 ~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~~-i~~~~~~~~~ 98 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KIDF-VRGPLTNFAS 98 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHHH-HHTHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHHH-HHHHHHHHHh
Confidence 689999999999999987544 577788889999999999999876 1 12344544332 1221 1221111100
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc---cccccccCCCCCCCCCcEEEEEccchh-hhhcc-CCCceE
Q 003265 175 VGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV---DLTKVGVPLPGPQNTTSKVVFTTRFID-VCGSM-EADRKF 249 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~l~~~l~~~~~~~s~IivTtR~~~-v~~~~-~~~~~~ 249 (835)
.. ...+++-++++||+.... ....+...+. ....+.++|+||.... +...+ .....+
T Consensus 99 ~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 99 AA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp BC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred hc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 00 012467899999996543 2333333222 2223567777776543 11110 113578
Q ss_pred EeccCChHHHHHHH-------HHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHH
Q 003265 250 LVACLSEKDAWELF-------REKVGEETLKSDHDIAELAQIVAKECVGLPLALIT 298 (835)
Q Consensus 250 ~l~~L~~~~~~~lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 298 (835)
.+.+++.++-.+++ .+.+.......++ .+....|++.++|.+-.+..
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 99999988843332 2222222211111 25677788889888765443
No 189
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.05 E-value=6e-05 Score=79.07 Aligned_cols=178 Identities=18% Similarity=0.202 Sum_probs=103.6
Q ss_pred cccchHHHHHHHHHHhh----------c--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV----------E--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.|.+.+. . ...+.|.|+|++|+|||+||+.+++.. ...| +.++++.
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~---~~v~~~~------ 86 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTF---FSVSSSD------ 86 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEE---EEEEHHH------
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCE---EEEchHH------
Confidence 68999999999988772 1 134578999999999999999999986 2222 2232211
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEcccCCccc-------------ccccccCCCC--CCCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRS-LRGKRIVLLLDDIWERVD-------------LTKVGVPLPG--PQNTT 227 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~--~~~~~ 227 (835)
+ .... ..........+... -..++.+|+||++..... ...+...+.. ....+
T Consensus 87 l----~~~~--------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 87 L----VSKW--------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp H----HTTT--------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred H----hhcc--------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1 1110 01122333333332 345778999999964211 1111111110 12335
Q ss_pred cEEEEEccchhhh-hcc--CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHHH
Q 003265 228 SKVVFTTRFIDVC-GSM--EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITIG 300 (835)
Q Consensus 228 s~IivTtR~~~v~-~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~ 300 (835)
..||.||...... ..+ .-...+.+...+.++-.+++...+........ .+....|++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666677653321 100 23456788899999999999998865432212 24566788888874 54555443
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.04 E-value=9.7e-05 Score=76.60 Aligned_cols=173 Identities=17% Similarity=0.218 Sum_probs=99.4
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.++|.+..++++.+.+.. ...+.|.|+|++|+|||+||+.+++.. ... ++.++ ..
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----GP 83 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCE-----EEEEC----HH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCC-----EEEEE----hH
Confidence 688999988888777642 345679999999999999999999986 222 22222 12
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc------------c----ccccccCCCC-CCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV------------D----LTKVGVPLPG-PQN 225 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~-~~~ 225 (835)
++.... .+.. . ......+.......+.+|+||++.... . ...+...+.. ...
T Consensus 84 ~l~~~~---~g~~-----~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 84 ELLTMW---FGES-----E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHH---HTTC-----T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred HHHhhh---cCch-----H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 222221 1111 1 112222333335678999999996310 0 1111111110 123
Q ss_pred CCcEEEEEccchh-hhhc-c---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchH
Q 003265 226 TTSKVVFTTRFID-VCGS-M---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLA 295 (835)
Q Consensus 226 ~~s~IivTtR~~~-v~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 295 (835)
.+..||.||.... +... . .-...+.+...+.++-.+++...+.........++. .+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCHH
Confidence 3566777776543 2111 1 223578899999999999998877654322222333 455567777654
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.04 E-value=9.1e-06 Score=77.72 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 23 ~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 23 PVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred hhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999988767788999999999999999999876
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.01 E-value=0.00017 Score=77.74 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=99.6
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.+.+.+.. ...+.|.|+|++|+|||+||+.+++.. ... .+.++++.-.. .
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~---~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NAT---FFNISAASLTS--K 187 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCE---EEEECSCCC-----
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCc---EEEeeHHHhhc--c
Confidence 689999999999888731 234688999999999999999998876 221 23333322211 0
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCcc--------c-----ccccccCC---CCCCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERV--------D-----LTKVGVPL---PGPQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l---~~~~~~ 226 (835)
. ..... .....+.. .-...+.+|+||+++... . ...+...+ ......
T Consensus 188 ~---------------~g~~~-~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 188 Y---------------VGEGE-KLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp -------------------CH-HHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c---------------cchHH-HHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 00111 12222222 224566899999995320 0 00111111 101123
Q ss_pred CcEEEEEccchh-hhhc-c-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch-HHHHHH
Q 003265 227 TSKVVFTTRFID-VCGS-M-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL-ALITIG 300 (835)
Q Consensus 227 ~s~IivTtR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~~ 300 (835)
...||.||.... +... . .....+.+...+.++..+++...+........ .+....|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 345665665432 2111 1 22346888999999999999888765432222 3456788888888654 555443
No 193
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.00 E-value=1.5e-05 Score=84.62 Aligned_cols=171 Identities=13% Similarity=0.101 Sum_probs=100.7
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
.++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+.++.......+.
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~~----- 98 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDLA----- 98 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHHH-----
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHHH-----
Confidence 689999999998888863 345678999999999999999998876 2332 233332221111111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc--cccccccCCCC-----------------CCCCCcEEE
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV--DLTKVGVPLPG-----------------PQNTTSKVV 231 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~-----------------~~~~~s~Ii 231 (835)
..+.. ..+..+|+||++.... ....+...+.. ...++..+|
T Consensus 99 ------------------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 99 ------------------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ------------------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ------------------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11110 2356788899886431 11111110000 011135566
Q ss_pred EEccchh-hhhcc--CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 232 FTTRFID-VCGSM--EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 232 vTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
.||.... +...+ .....+.+.+++.++...++.+.+.......+ .+..+.|++.+.|+|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHHH
Confidence 6665432 21111 12367999999999999999887653331112 3567788889999996555443
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.95 E-value=0.00012 Score=77.68 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=101.0
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.. ... .+.+.++ +
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------~ 119 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------D 119 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------H
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------H
Confidence 689999999988887631 123468899999999999999999987 222 2223222 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCccc-------------ccccccCCCC--CCCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERVD-------------LTKVGVPLPG--PQNTT 227 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~--~~~~~ 227 (835)
+ .... .... ......+.. .-..++.+|+||++..... ...+...+.. ....+
T Consensus 120 l----~~~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 120 L----VSKW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp H----HSCC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred H----hhhh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1 1111 1111 222222322 3346789999999964210 1111111100 12334
Q ss_pred cEEEEEccchh-----hhhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHHH
Q 003265 228 SKVVFTTRFID-----VCGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITIG 300 (835)
Q Consensus 228 s~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~ 300 (835)
..||.||.... +.. .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666665442 222 23467788999999999999988765432111 34556788889884 54455543
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.94 E-value=0.00025 Score=77.69 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=101.1
Q ss_pred cccchHHHHHHHHHHhh------------cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV------------EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++.. .. .-++.++.. .
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~----~~~~~v~~~----~ 203 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN----STFFSISSS----D 203 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS----SEEEEECCC-----
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC----CCEEEEeHH----H
Confidence 57899999998887763 1234688999999999999999999976 11 123333322 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc-------------cccccccCCCC--CCCCCc
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV-------------DLTKVGVPLPG--PQNTTS 228 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~--~~~~~s 228 (835)
+.... .+. ......... ...-..++.+|+||++.... ....+...+.. ....+.
T Consensus 204 l~~~~---~g~-----~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 LVSKW---LGE-----SEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred HHhhh---cch-----HHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 11110 110 111222221 22224678899999996431 01112222220 123456
Q ss_pred EEEEEccchhh-hhc-c-CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHHH
Q 003265 229 KVVFTTRFIDV-CGS-M-EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITIG 300 (835)
Q Consensus 229 ~IivTtR~~~v-~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~~ 300 (835)
.||.||..... ... . .....+.+...+.++-..+|...+........ ......|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 67767765432 111 1 22356788888899999999888765432111 24556788889885 44555443
No 196
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=3.6e-06 Score=84.62 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=61.2
Q ss_pred hcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCC--CCcEEecccccccCCcc-----
Q 003265 486 FQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLV--NLKCLNLRWAYRLNKIP----- 558 (835)
Q Consensus 486 ~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~--~L~~L~L~~~~~l~~lp----- 558 (835)
..++++|+.|+|++|.+. .+..+|..+..+. +|++|+|++|.|+.+ ..+..+. +|++|+|++|..-..+|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLY-RLDDMSSIVQKAP-NLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHCTTCCEEECTTSCCC-CCGGGTTHHHHST-TCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred HhhCCCCCEEECCCCCCC-CCccchhHHhhCC-CCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 367889999999999332 3334556677887 999999999988877 3455555 89999999885333344
Q ss_pred -hHHhccCcccceeeec
Q 003265 559 -RQLISNYSRLCVLRMF 574 (835)
Q Consensus 559 -~~~i~~L~~L~~L~l~ 574 (835)
..++..+++|+.|+-.
T Consensus 243 ~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHHCTTCCEESSC
T ss_pred HHHHHHHCcccCeECCc
Confidence 2346778888888754
No 197
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=97.90 E-value=1.8e-05 Score=68.15 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 003265 3 RLDGVQVWVSSVDAVKTGADELITDGSEEIG 33 (835)
Q Consensus 3 ~~~~v~~Wl~~~~~~~~~~ed~~d~~~~~~~ 33 (835)
.++.|+.|+++||+++||+||+||+|.++..
T Consensus 53 ~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 53 LDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999998875
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.88 E-value=9.8e-05 Score=81.55 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=82.5
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCC---CC-C-eEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPT---NF-D-CVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f-~-~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
+++||+.+++.++..+......-+.|+|++|+|||++|+.++.... ... .. + ..+.+.++ .
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~-~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII-NNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH-SSCSCTTTSSCCEECC-----------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH-hCCCChhhcCCeEEEeeCC-------------c
Confidence 6899999999999999876666778999999999999999998862 111 11 1 12222222 0
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhhh-------hcc
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDVC-------GSM 243 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v~-------~~~ 243 (835)
..... ........ +...-..++.+|++|. .......+...+. ....++|.+|...... ...
T Consensus 247 ~~~g~----~e~~~~~~---~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 KYRGE----FEDRLKKV---MDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ----------CTTHHHH---HHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred cccch----HHHHHHHH---HHHHHhcCCeEEEEeC--chhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00000 01111222 2222235778999991 2222222333332 2235666666544311 111
Q ss_pred CCCceEEeccCChHHHHHHHHHHhCC
Q 003265 244 EADRKFLVACLSEKDAWELFREKVGE 269 (835)
Q Consensus 244 ~~~~~~~l~~L~~~~~~~lf~~~~~~ 269 (835)
.-...+.+...+.++..+++...+..
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 12346899999999999999876543
No 199
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.88 E-value=0.00023 Score=77.12 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=69.9
Q ss_pred CCCC-cceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHh-hhhhcccEEeeccccccccch-hhcC
Q 003265 463 PKCP-HLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMS-ELGSSLQLFDISLTLIKELPE-ELKK 539 (835)
Q Consensus 463 ~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~-~l~~~L~~L~L~~~~i~~Lp~-~i~~ 539 (835)
.+|. .|+++.+. +....+...+|.++.+|+.+.+..+.-+ .++.+....+ .+. +|+.+.+..+ ++.++. .+..
T Consensus 60 ~~~~~~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~-~l~~Ig~~aF~~c~-~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 60 CNYKYVLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPS-CVKKIGRQAFMFCS-ELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTCCSCCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCC-CCCEECTTTTTTCT-TCCBCGGGTT-CSEECTTTTTT
T ss_pred cCCCCcCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCC-eeeEechhhchhcc-cceeeccCCc-cceehhhhhhh
Confidence 4564 58888887 3333777888888888988888775100 3555654443 344 7777666543 555543 4567
Q ss_pred CCCCcEEecccccccCCcchHHhccCcccceeeecC
Q 003265 540 LVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFG 575 (835)
Q Consensus 540 L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 575 (835)
+.+|+.+.+..+ +..++...+..+.+|+.+.+..
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hcccccccccce--eeeecccceecccccccccccc
Confidence 788888888643 4666666677778888777764
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00029 Score=74.47 Aligned_cols=170 Identities=20% Similarity=0.231 Sum_probs=99.3
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
++.|-++.+++|.+.+.- ...+-|.++|++|.|||.||+++++.. ...| +.|..+.-.+
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC--
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc--
Confidence 456888888888766531 245678899999999999999999987 3332 3343332211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCcc----------c------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERV----------D------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------~------~~~l~~~l~~-~~ 224 (835)
. -....+..+..+.. .-...+++|+||+++... + ...+...+.. ..
T Consensus 221 ------------k----~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 ------------K----YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp ------------S----STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred ------------c----ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 0 00112222333333 235678999999996420 0 1111111110 12
Q ss_pred CCCcEEEEEccchhh-----hhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 225 NTTSKVVFTTRFIDV-----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 225 ~~~s~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+..||.||..... ...-.-...+.+..-+.++-.++|..++........-++ ..|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 334556667765443 111234578899988999999999887765443333344 45566688764
No 201
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.83 E-value=5e-05 Score=80.58 Aligned_cols=58 Identities=21% Similarity=0.136 Sum_probs=29.8
Q ss_pred HhhhhhcccEEeeccccccccchhhcCCCCCcEEecccccccCCcchHHh--ccCcccceeeec
Q 003265 513 MSELGSSLQLFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLI--SNYSRLCVLRMF 574 (835)
Q Consensus 513 i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i--~~L~~L~~L~l~ 574 (835)
+..++ +|+.|+|++|.-..+|. + .+.+|++|++..| .+..-....+ ..+++|++|+++
T Consensus 168 l~~~P-~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMP-LLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCT-TCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCC-CCcEEEEeCCCCceecc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence 34444 67777776663223443 3 2667777777665 2221111112 256777777764
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=6.7e-05 Score=77.47 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCC-CCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCC
Q 003265 99 GLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESP-TNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVG 176 (835)
Q Consensus 99 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 176 (835)
|.++.++.+.+.+..+..+...++|++|+||||+|+.+++...... .+.+ ...+..+. ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4455667788888776678999999999999999999987631111 2333 34554432 2233332 23444332211
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccc-hhhhhccCCCceEEecc
Q 003265 177 DSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRF-IDVCGSMEADRKFLVAC 253 (835)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~-~~v~~~~~~~~~~~l~~ 253 (835)
..+++-++|+|++... .....+...+. .....+.+|++|.+ ..+...+... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1245679999999643 33445554443 34456677666544 3444434444 899999
Q ss_pred CChHHHHHHHHHHh
Q 003265 254 LSEKDAWELFREKV 267 (835)
Q Consensus 254 L~~~~~~~lf~~~~ 267 (835)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.81 E-value=6.7e-05 Score=89.65 Aligned_cols=153 Identities=15% Similarity=0.231 Sum_probs=85.1
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhccc--CCCCC-C-eEEEEEecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLE--SPTNF-D-CVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
+++||++++.++++.+.......+.++|++|+|||++|+.+++.... +.... + .++++.++.-..
T Consensus 171 ~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~----------- 239 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA----------- 239 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------------
T ss_pred ccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-----------
Confidence 68999999999999998766667889999999999999999987621 11111 1 233343321100
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEcccCCcc-------ccc---ccccCCCCCCCCCcEEEEEccchhh
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSLR--GKRIVLLLDDIWERV-------DLT---KVGVPLPGPQNTTSKVVFTTRFIDV 239 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~---~l~~~l~~~~~~~s~IivTtR~~~v 239 (835)
+.. ...........+...+. +++.+|+||++.... .++ .+...+. . .+..+|.+|.....
T Consensus 240 -g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 -GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--R-GELRLIGATTLDEY 311 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--T-TCCCEEEEECHHHH
T ss_pred -cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--C-CCeEEEEecCchHH
Confidence 000 11223333444444442 368999999996431 011 1111121 1 23445555544332
Q ss_pred -----hh-ccCCCceEEeccCChHHHHHHHHHHh
Q 003265 240 -----CG-SMEADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 240 -----~~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
.. ...-...+.+.+++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11 11223468999999999999987543
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=1.6e-05 Score=75.95 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=65.8
Q ss_pred CCCCcceEEEeccC-Ccc----cccchhhcCCCcceEEEeecCCCCccccc-----cCchHhhhhhcccEEeeccccccc
Q 003265 463 PKCPHLLTLFLDFN-QEL----KIADGFFQFMPSLKVLKMSYCGQSWSSFQ-----LPVGMSELGSSLQLFDISLTLIKE 532 (835)
Q Consensus 463 ~~~~~L~~L~l~~~-~~~----~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~-----lp~~i~~l~~~L~~L~L~~~~i~~ 532 (835)
..++.|++|++++| ..- ......+...++|++|+|++| .+.. +...+.... +|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n----~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT----RSNDPVAFALAEMLKVNN-TLKSLNVESNFISG 107 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS----CCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC----CCChHHHHHHHHHHHhCC-CcCEEECcCCcCCH
Confidence 56778888888866 322 111223566778888888888 4433 333344444 78888888886654
Q ss_pred -----cchhhcCCCCCcEEec--ccccccCC-----cchHHhccCcccceeeecCcCc
Q 003265 533 -----LPEELKKLVNLKCLNL--RWAYRLNK-----IPRQLISNYSRLCVLRMFGTGW 578 (835)
Q Consensus 533 -----Lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~ 578 (835)
+...+...++|++|+| ++| .+.. +.. .+...++|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 4556666677777777 556 3432 222 144456666666665544
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=2.7e-05 Score=70.95 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999888753 333457799999999999999999875
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.75 E-value=0.00023 Score=78.50 Aligned_cols=177 Identities=18% Similarity=0.202 Sum_probs=101.4
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.++|.+..++++.+.+.. ...+-|.|+|++|+|||++|+.+++.. ... .+.++++.
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~---fv~vn~~~----- 273 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSE---EEEEEHHH-----
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCC---EEEEEchH-----
Confidence 578999999998887642 344678999999999999999998876 222 23343221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc-------------cccccccCCCC-CCCCCc
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV-------------DLTKVGVPLPG-PQNTTS 228 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~l~~-~~~~~s 228 (835)
+...+ ...........+.....+++.+|+||+++... ....+...+.. ....+.
T Consensus 274 -----l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 274 -----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp -----HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred -----hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 11111 11111222233344446778999999994210 00111111110 123345
Q ss_pred EEEEEccchh-hhhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc-chHHHHH
Q 003265 229 KVVFTTRFID-VCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL-PLALITI 299 (835)
Q Consensus 229 ~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 299 (835)
+||.||.... +...+ .-...+.+...+.++-.+++...+.........++ ..+++.+.|. +-.+..+
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHH
Confidence 6666666542 22211 22346889999999999999988765443333333 4455567774 4444443
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00032 Score=75.45 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=97.3
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc--
Confidence 456888888887766531 245789999999999999999999987 222 23344332211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCcc--------c--------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERV--------D--------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~~-~~ 224 (835)
. -..........+.. .-...+.+|++|+++... . +..+...+.. ..
T Consensus 254 ------------k----~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ------------K----YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ------------S----SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ------------c----cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0 01112222333332 335689999999996320 0 1111111110 23
Q ss_pred CCCcEEEEEccchhhh-hc-cC---CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 225 NTTSKVVFTTRFIDVC-GS-ME---ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 225 ~~~s~IivTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+..||.||...... .. .. -...+.+..-+.++-.++|..++.........++ ..+++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 3455677777665432 11 12 2356778877888888888877654432233333 45566787764
No 208
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00051 Score=73.57 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 457888888888776421 356789999999999999999999987 222 23343332110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCccc----------------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWERVD----------------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~-~~ 224 (835)
. -....+.....+.. .-...+++|++|+++.... ...+...+.. ..
T Consensus 282 ------------k----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 282 ------------K----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp ------------C----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred ------------c----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 0 01112222333332 3356789999999863210 0011111110 22
Q ss_pred CCCcEEEEEccchhhh-----hccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 225 NTTSKVVFTTRFIDVC-----GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 225 ~~~s~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+..||.||...... ..-.-...+.+..-+.++-.++|..++........-++ ..|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 3345566677654321 11134567888888899999999888765443333333 44566788763
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.69 E-value=2.3e-05 Score=74.46 Aligned_cols=117 Identities=16% Similarity=0.150 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCC
Q 003265 100 LQSQLEQVWTCLVE---ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVG 176 (835)
Q Consensus 100 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 176 (835)
..+.++.+.+++.+ .....+.|+|++|+||||||+.+++.. .....+ .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGI-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCC-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCC-eEEEE------EHHHHHHHHHHHhcCch
Confidence 44445555555543 345789999999999999999999886 211122 22333 33445555544433211
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCC--ccccc--ccccCCCCCCCCCcEEEEEccc
Q 003265 177 DSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWE--RVDLT--KVGVPLPGPQNTTSKVVFTTRF 236 (835)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~--~l~~~l~~~~~~~s~IivTtR~ 236 (835)
. . ... ..+. ++-+|||||++. ...|. .+...+......|..||+||..
T Consensus 91 ----~-~--~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 ----D-T--KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----C-S--HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----H-H--HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 1 112 2222 456899999973 22222 1211121011246778888874
No 210
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00055 Score=72.58 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=96.2
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.++.+++|.+.+.- ...+-|.++|++|.|||.||+++++.. ...| +.+..+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGGCC--
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHhhh--
Confidence 456888888887766531 245789999999999999999999987 2222 2333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEcccCCccc----------------ccccccCCC-CCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS-LRGKRIVLLLDDIWERVD----------------LTKVGVPLP-GPQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~-~~~ 224 (835)
. -....+..+..+... -...+.+|++|+++.... +..+...+. ...
T Consensus 255 ------------k----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 ------------K----YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ------------S----SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ------------c----cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 011222333333332 246789999999863200 001111110 022
Q ss_pred CCCcEEEEEccchhhh-hcc-C---CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 225 NTTSKVVFTTRFIDVC-GSM-E---ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 225 ~~~s~IivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+..||.||...... ..+ . -...+.+..-+.++-.++|..++.......+.++ ..|++.+.|.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 3345666677654432 222 2 2345778878888888899887765443333344 44556677753
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.66 E-value=0.00099 Score=67.20 Aligned_cols=177 Identities=20% Similarity=0.193 Sum_probs=95.6
Q ss_pred cccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++++.+.+. . ...+-+.|+|++|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT---
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH---
Confidence 68999888777665432 1 123468899999999999999999886 2222 3333222110
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCccc----------------ccccccCCCC-CCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVD----------------LTKVGVPLPG-PQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~l~~~l~~-~~~~ 226 (835)
.. ...........+.......+.++++|++..... ...+...+.. ....
T Consensus 84 -------~~-------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------SC-------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------Hh-------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 111222223333334455678999999842100 0111111100 1233
Q ss_pred CcEEEEEccchh-hhhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCC-cchHHHHH
Q 003265 227 TSKVVFTTRFID-VCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVG-LPLALITI 299 (835)
Q Consensus 227 ~s~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~ 299 (835)
+..||.||.... +.... .-...+.+...+.++-.+++...+.......+.. ...++..+.| .+--+..+
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 456777776543 21111 1235677888888888888877765433222222 2346667778 66555443
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00046 Score=74.10 Aligned_cols=170 Identities=21% Similarity=0.269 Sum_probs=91.5
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.|..+.-.+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC--
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc--
Confidence 457889888888776531 345679999999999999999999987 222 23344333211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEcccCCc--------cc--------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFR-SLRGKRIVLLLDDIWER--------VD--------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--------~~--------~~~l~~~l~~-~~ 224 (835)
. -....+..+..+.. .-...+.++++|+++.. .. ...+...+.. ..
T Consensus 245 ------------~----~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ------------K----YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ------------S----SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ------------c----ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0 01112222223322 33567899999998521 00 1111111110 12
Q ss_pred CCCcEEEEEccchhh-----hhccCCCceEEeccCCh-HHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 225 NTTSKVVFTTRFIDV-----CGSMEADRKFLVACLSE-KDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 225 ~~~s~IivTtR~~~v-----~~~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+..||.||..... .....-...+.+..+++ ++-..+|..++.......+.++ ..+++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 345566777765432 11112234677766654 4455666665544332233333 45566677753
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.63 E-value=0.0005 Score=81.29 Aligned_cols=153 Identities=16% Similarity=0.249 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCC---CCCCeEEEE-EecCccCHHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESP---TNFDCVIWV-VVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv-~~s~~~~~~~~~~~i~~~ 171 (835)
+++||+.+++++++.|......-+.|+|++|+|||++|+.+++...... ......++. ..+. +
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l------- 253 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L------- 253 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------------
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H-------
Confidence 6899999999999999877667788999999999999999998762110 012233321 1111 0
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc--------c---ccccccCCCCCCCCCcEEEEEccchhh
Q 003265 172 IGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV--------D---LTKVGVPLPGPQNTTSKVVFTTRFIDV 239 (835)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~---~~~l~~~l~~~~~~~s~IivTtR~~~v 239 (835)
+... ......+.....+...+ ..++.+|++||+.... . ...+...+. ..+.++|.+|...+.
T Consensus 254 ~~~~---~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 LAGT---KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQEF 327 (758)
T ss_dssp -CCC---CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHHH
T ss_pred hccc---cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchHH
Confidence 0000 01234444555555544 3467999999996431 1 111222222 234566666665443
Q ss_pred hhcc-------CCCceEEeccCChHHHHHHHHHHh
Q 003265 240 CGSM-------EADRKFLVACLSEKDAWELFREKV 267 (835)
Q Consensus 240 ~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 267 (835)
.... .-...+.+...+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 2111 112368899999999988887654
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=1.6e-05 Score=75.97 Aligned_cols=121 Identities=17% Similarity=0.068 Sum_probs=79.2
Q ss_pred hhhcCCCcceEEEeecC-CCCc-cccccCchHhhhhhcccEEeeccccccc-----cchhhcCCCCCcEEecccccccCC
Q 003265 484 GFFQFMPSLKVLKMSYC-GQSW-SSFQLPVGMSELGSSLQLFDISLTLIKE-----LPEELKKLVNLKCLNLRWAYRLNK 556 (835)
Q Consensus 484 ~~~~~l~~Lr~L~Ls~~-~~~~-~i~~lp~~i~~l~~~L~~L~L~~~~i~~-----Lp~~i~~L~~L~~L~L~~~~~l~~ 556 (835)
..+...+.|+.|+|++| .+.. ....+...+.... +|++|+|++|.|.. +...+...++|++|+|++| .+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 34677889999999988 4321 1222444455555 89999999997763 4556667788999999988 4544
Q ss_pred -----cchHHhccCcccceeee--cCcCccCcccCCCcccccCCcccchHhhcCCCCCCeEEEEecchh
Q 003265 557 -----IPRQLISNYSRLCVLRM--FGTGWFNFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYH 618 (835)
Q Consensus 557 -----lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 618 (835)
+... +...++|++|++ ++|.+...+. ......+...++|+.|+++.+...
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~-----------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE-----------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH-----------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH-----------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3333 667778999998 6676653110 112344555677888888776654
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00034 Score=75.20 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=95.8
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~-- 253 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ-- 253 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS--
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh--
Confidence 457889888888776431 245789999999999999999999987 222 23333332110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEcccCCc-------cc---------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS-LRGKRIVLLLDDIWER-------VD---------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~-------~~---------~~~l~~~l~~-~~ 224 (835)
. -....+.....+... -...+++|++|+++.. .. ...+...+.. ..
T Consensus 254 ------------~----~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 254 ------------M----YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp ------------S----CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred ------------c----ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 0 011122233333332 2457899999998521 00 1112222210 12
Q ss_pred CCCcEEEEEccchhhh-hcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 225 NTTSKVVFTTRFIDVC-GSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 225 ~~~s~IivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+..||.||...... ..+ .-...+.+..-+.++-.++|..++........-++ ..|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 3345666677665432 211 22456788888888888888766643332222333 44566687753
No 216
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.60 E-value=0.00036 Score=75.51 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=52.6
Q ss_pred cccccccccceecccccccccccccchhcccccCCcccCCCccEEeEecCCCCCCCc--hhhccCCccEEeeecCccchh
Q 003265 652 AFADLNHLNELGIDRAEELEELKIDYAEIVRKRREPFVFRSLHLVAIYECHKLKDLT--FLVFAPSLKSLSLYGCNAMEE 729 (835)
Q Consensus 652 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~ 729 (835)
.+..+.+|+.+.+.. .++.+....+. .+.+|+.+.|.+ .++.+. .+..+.+|+.+.|..+ ++.
T Consensus 292 ~F~~~~~L~~i~l~~--~i~~I~~~aF~---------~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~ 356 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD--SVKFIGEEAFE---------SCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRK 356 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCEECTTTTT---------TCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCE
T ss_pred ccccccccccccccc--ccceechhhhc---------CCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccE
Confidence 444556666666642 23333222222 366677777753 244443 3566777777777542 444
Q ss_pred hcccCccCCCcccccCCCCCCcccEeecCCCCccccccCCCCCCCCccE
Q 003265 730 IISVGKFDETPEVMGHISPFGNLQTLDLSRLPILKSIYWKPLPFTHLKE 778 (835)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 778 (835)
+.. ..+.++++|+.+.|.. +++.+......+++|+.
T Consensus 357 I~~-----------~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 357 IGA-----------NAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKW 392 (394)
T ss_dssp ECT-----------TTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEE
T ss_pred ehH-----------HHhhCCCCCCEEEECC--CCEEhhheecCCCCCcE
Confidence 432 1456677777777753 34555444444444443
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.60 E-value=0.00041 Score=81.88 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=83.5
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCC--CeEEEEEecCccCHHHHHHHHHHHhC
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNF--DCVIWVVVSKDLRLEKLQEDIGKKIG 173 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~ 173 (835)
+++||+.++++++..|......-+.++|++|+|||++|+.+++........+ ...-++.++- +
T Consensus 181 ~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g 245 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------G 245 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------c
Confidence 6899999999999999876666788999999999999999998862111011 1111111111 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcccccccccCCCCCCCCCcEEEEEccchhh------hh-ccCCC
Q 003265 174 LVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERVDLTKVGVPLPGPQNTTSKVVFTTRFIDV------CG-SMEAD 246 (835)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~l~~~l~~~~~~~s~IivTtR~~~v------~~-~~~~~ 246 (835)
............. .+......++.+|++|. .......+...+. ....++|.||..... .. ...-.
T Consensus 246 ~~~~G~~e~~l~~---~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~rRf 317 (758)
T 3pxi_A 246 TKYRGEFEDRLKK---VMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALERRF 317 (758)
T ss_dssp -------CTTHHH---HHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred ccccchHHHHHHH---HHHHHHhcCCEEEEEcC--chhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence 0000001111222 22223346788999992 2222222222222 234566666655441 10 01112
Q ss_pred ceEEeccCChHHHHHHHHHHhCC
Q 003265 247 RKFLVACLSEKDAWELFREKVGE 269 (835)
Q Consensus 247 ~~~~l~~L~~~~~~~lf~~~~~~ 269 (835)
..+.+...+.++..+++......
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999876543
No 218
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.57 E-value=9.5e-05 Score=75.33 Aligned_cols=172 Identities=20% Similarity=0.146 Sum_probs=89.9
Q ss_pred cccchHHHHHHHHHHhhc------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..++.+.+.+.. ...+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~---- 81 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFI---- 81 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTT----
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHH----
Confidence 688988777776665431 123447799999999999999999986 22221 11111110
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc-----------------cccccccCCCCC--C
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV-----------------DLTKVGVPLPGP--Q 224 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~l~~~--~ 224 (835)
....... ..... ..+......++.+|+|||+.... ....+...+... .
T Consensus 82 ------~~~~~~~----~~~~~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 82 ------EMFVGLG----ASRVR---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp ------TSCSSSC----SSSSS---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred ------HhhcchH----HHHHH---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 0000000 00001 11222223567899999995321 122222222211 1
Q ss_pred CCCcEEEEEccchhhh-h-cc---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcch
Q 003265 225 NTTSKVVFTTRFIDVC-G-SM---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPL 294 (835)
Q Consensus 225 ~~~s~IivTtR~~~v~-~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 294 (835)
.....||.||...... . .. .-...+.+...+.++-.+++...+..........+ ..|++.+.|.|-
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 1224566677654321 1 11 12356788888999999999877654322111112 235556777654
No 219
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.51 E-value=0.00052 Score=71.45 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=37.8
Q ss_pred cccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE--------------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|++..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999988877753 234568899999999999999999987
No 220
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=2.7e-05 Score=78.23 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=58.5
Q ss_pred hcCCCcceE--EEeecCCCCccccccCchH----hhhhhcccEEeecccccccc---chhhcCCCCCcEEecccccccCC
Q 003265 486 FQFMPSLKV--LKMSYCGQSWSSFQLPVGM----SELGSSLQLFDISLTLIKEL---PEELKKLVNLKCLNLRWAYRLNK 556 (835)
Q Consensus 486 ~~~l~~Lr~--L~Ls~~~~~~~i~~lp~~i----~~l~~~L~~L~L~~~~i~~L---p~~i~~L~~L~~L~L~~~~~l~~ 556 (835)
|...+.|.. ++++.| ....++..+ ..+. +|+.|+|++|.|+.+ |..+..+++|++|+|++| .+..
T Consensus 137 l~~dp~L~~~~l~l~~N----~~~~~~~~l~i~~~~l~-~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~ 210 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLN----RRSCMAATLRIIEENIP-ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKS 210 (267)
T ss_dssp GGGCHHHHHTTCCCCTT----SHHHHHHHHHHHHHHCT-TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCS
T ss_pred cCCCcchhhcCccccCC----HHHHHHHHHHHHHhhCC-CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCC
Confidence 444445554 555666 444444322 3455 899999999987765 466778999999999988 6776
Q ss_pred cchHHhccCc--ccceeeecCcCcc
Q 003265 557 IPRQLISNYS--RLCVLRMFGTGWF 579 (835)
Q Consensus 557 lp~~~i~~L~--~L~~L~l~~~~~~ 579 (835)
+.. +..++ +|++|++.+|.+.
T Consensus 211 ~~~--l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 211 ERE--LDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp GGG--GGGGTTSCCSEEECTTSTTG
T ss_pred chh--hhhcccCCcceEEccCCcCc
Confidence 643 55555 8899999888765
No 221
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.004 Score=66.74 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=60.8
Q ss_pred CceEEEEeeeCCccccCC--CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhccc
Q 003265 444 ENVRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQ 521 (835)
Q Consensus 444 ~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~ 521 (835)
.+++.+.+. ..+..++. +.+|.+|+.+.+. +....+...+|.++ .|..+.+.. .+..++...+... +|+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp-~~v~~Ig~~aF~~c-~l~~i~~~~-----~l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVA-STVTSIGDGAFADT-KLQSYTGME-----RVKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEEC-TTCCEECTTTTTTC-CCCEEEECT-----TCCEECTTTTTTC-CCS
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeC-CcceEechhhhcCC-CCceEECCc-----eeeEeccceeccC-Ccc
Confidence 345555554 23444433 2566777777765 32225666666666 344444432 3445555555555 666
Q ss_pred EEeeccccccccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecC
Q 003265 522 LFDISLTLIKELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFG 575 (835)
Q Consensus 522 ~L~L~~~~i~~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 575 (835)
.+.+..+ ++.+......-.+|..+.+..+ +..+....+..+.+|+.+.+..
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred cccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 6666543 3333333222234555554433 3444444455666666665553
No 222
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.48 E-value=0.0025 Score=68.80 Aligned_cols=119 Identities=12% Similarity=0.169 Sum_probs=75.5
Q ss_pred eEEEEeeeCCccccCC--CCCCCcceEEEeccCC--cc-cccchhhcCCCcceEEEeecCCCCccccccCchH-hhhhhc
Q 003265 446 VRRLSLMQNQIETLSE--VPKCPHLLTLFLDFNQ--EL-KIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGM-SELGSS 519 (835)
Q Consensus 446 ~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~--~~-~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i-~~l~~~ 519 (835)
++.+.+.. .+..+.. +.+|++|+.+.+..+. .+ .+....|.++..|+.+.+..+ +..++... ..+. +
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-----~~~I~~~aF~~c~-~ 138 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-----VTEIDSEAFHHCE-E 138 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-----CSEECTTTTTTCT-T
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-----cceehhhhhhhhc-c
Confidence 56666653 3454443 3688888888887542 23 677777888888887666543 44555443 4455 8
Q ss_pred ccEEeeccccccccc-hhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecC
Q 003265 520 LQLFDISLTLIKELP-EELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFG 575 (835)
Q Consensus 520 L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~ 575 (835)
|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+....+. ..+|+.+.+..
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECT
T ss_pred cccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECC
Confidence 888888643 44443 34667788888888654 5666665454 35677777754
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.47 E-value=0.00022 Score=69.07 Aligned_cols=114 Identities=24% Similarity=0.198 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcC----CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCC
Q 003265 102 SQLEQVWTCLVEE----SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD 177 (835)
Q Consensus 102 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 177 (835)
..++.+.+++... ....+.|+|++|+|||+||+.+++.. . .....++++.++ .+...+...+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 3445555555543 12789999999999999999999987 2 223345666543 344444332211
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCc--ccccc--ccc-CCCCCCCCCcEEEEEccc
Q 003265 178 SWKSRSAEEKALDIFRSLRGKRIVLLLDDIWER--VDLTK--VGV-PLPGPQNTTSKVVFTTRF 236 (835)
Q Consensus 178 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~--l~~-~l~~~~~~~s~IivTtR~ 236 (835)
......... +.+ .-+|||||++.. ..|.. +.. .+......+.++|+||..
T Consensus 104 ----~~~~~~~~~----~~~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDY----IKK-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHH----HHH-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHH----hcC-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 111222222 222 239999999542 23322 211 111011234578888774
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.43 E-value=0.0024 Score=69.71 Aligned_cols=171 Identities=19% Similarity=0.183 Sum_probs=96.1
Q ss_pred cccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.++.++++.+.+. . ...+-|.|+|++|+|||+||+.+++.. ...| +.++++.-...
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC--
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH--
Confidence 67899887777665542 1 123458899999999999999999986 2222 33433322110
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc----------------cccccccCCCC-CCCC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV----------------DLTKVGVPLPG-PQNT 226 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~l~~-~~~~ 226 (835)
+ ...........+.....+.+.+|+||++.... ....+...+.. ....
T Consensus 89 --------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 --------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp --------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred --------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00011122223344446788999999995421 01112111100 1223
Q ss_pred CcEEEEEccchhhhh--ccC---CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 227 TSKVVFTTRFIDVCG--SME---ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 227 ~s~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
+..||.||....... ... -...+.+...+.++-.+++..++.........+ ...|++.+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 556777776654321 112 234788888888888888887765443222222 334677788877
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.40 E-value=5.5e-05 Score=68.70 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999998888887754 333457799999999999999998765
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.36 E-value=0.00061 Score=70.96 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=43.9
Q ss_pred cccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc
Q 003265 96 KVVGLQSQLEQVWTCLVEE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 158 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 158 (835)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.++.... ..-...+.+.++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 5789999988888777642 235899999999999999999999862 22223455655543
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.25 E-value=0.0016 Score=71.68 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=35.7
Q ss_pred cccchHHHHHHHHHHh---hcC--CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCL---VEE--SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 6899998887655443 333 33578899999999999999999887
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.22 E-value=3.1e-05 Score=70.70 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.6
Q ss_pred ccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 97 VVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 97 ~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
++|..++.-. .|..-....++|+|+.|+|||||++.++... .. ..+ .++++...+
T Consensus 20 ~~g~n~~~~~---~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 20 LGTENAELVY---VLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAAS 74 (149)
T ss_dssp CSCCTHHHHH---HCCCCCCSEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETTT
T ss_pred CcCccHHHHH---HHHhcCCCEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHHH
Confidence 3465544333 3322255789999999999999999999987 22 222 256665443
No 229
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.19 E-value=0.0049 Score=64.70 Aligned_cols=171 Identities=19% Similarity=0.182 Sum_probs=92.7
Q ss_pred cccchHHHHHHHHHHhhc-----CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-----ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
.++|.+..++.+...+.. .....+.|+|++|+||||||+.++... ...|. .....-...
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~---------- 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVK---------- 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCS----------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcC----------
Confidence 678988877777666643 244679999999999999999999987 22221 111100001
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEcccCCcc--cccccccCCCCC-------CC----------CCcEE-
Q 003265 171 KIGLVGDSWKSRSAEEKALDIFRSLRGKRIVLLLDDIWERV--DLTKVGVPLPGP-------QN----------TTSKV- 230 (835)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~l~~~l~~~-------~~----------~~s~I- 230 (835)
..+.. .+...+ .++-++++|++.... ..+.+...+... .+ ....+
T Consensus 90 -------------~~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 90 -------------QGDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -------------HHHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -------------HHHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 11111 111122 234477788874321 111110000000 00 01122
Q ss_pred EEEccchhhhhccC--CCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHHH
Q 003265 231 VFTTRFIDVCGSME--ADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITIG 300 (835)
Q Consensus 231 ivTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~~ 300 (835)
-.|++...+...+. ....+.+++.+.++..+++.+.+.......+ .+.+..|++.+.|.|-.+..+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHHHH
Confidence 23444433322111 1235789999999999999887643221111 3668889999999997654443
No 230
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.17 E-value=0.00081 Score=69.53 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|++..+.++.+.+.. .....|.|+|.+|+|||++|+.+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 588999999988887764 334567799999999999999999875
No 231
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.16 E-value=0.0023 Score=74.19 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=95.6
Q ss_pred cccchHHHHHHHHHHhh----c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLV----E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ..+ .+.|+.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 45677777777766542 1 245679999999999999999999987 222 23343321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHH-HHHHhcCCcEEEEEcccCCcc--------c-----ccccccCCCC-CCCCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALD-IFRSLRGKRIVLLLDDIWERV--------D-----LTKVGVPLPG-PQNTT 227 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~--------~-----~~~l~~~l~~-~~~~~ 227 (835)
+.... .. ..+..... +.......+.+|+||+++... + ...+...+.. ....+
T Consensus 274 -----l~sk~-------~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 274 -----IMSKL-------AG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -----HHSSC-------TT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -----hhccc-------ch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 11110 11 12222333 333445679999999996321 0 0111111100 11223
Q ss_pred cEEEEEccchh-hhhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 228 SKVVFTTRFID-VCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 228 s~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..||.||.... +...+ .-.+.+.+..-+.++-.++|..+........+.++ ..|++++.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 45566665543 32222 22457888888998889999877755443333333 44666688764
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.03 E-value=0.0051 Score=63.15 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.00 E-value=0.00044 Score=81.59 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=43.1
Q ss_pred cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 96 KVVGLQSQLEQVWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
.++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 578999998888877753 1223699999999999999999999861 2223345566554
No 234
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.98 E-value=0.015 Score=62.17 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=71.3
Q ss_pred CCCCCcceEEEeccCCcccccchhhcCCCcceEEEeecCCCCccccccCchHhhhhhcccEEeeccccccccchhhcCCC
Q 003265 462 VPKCPHLLTLFLDFNQELKIADGFFQFMPSLKVLKMSYCGQSWSSFQLPVGMSELGSSLQLFDISLTLIKELPEELKKLV 541 (835)
Q Consensus 462 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~i~~L~ 541 (835)
.....+|+++.+. .....++...|.++.+|+.+.|.. .++.++...+.-. +|+.+.+.. .++.++.......
T Consensus 42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-----~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~ 113 (379)
T 4h09_A 42 YKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-----TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT 113 (379)
T ss_dssp GGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-----TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC
T ss_pred cccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-----cceEechhhhcCC-CCceEECCc-eeeEeccceeccC
Confidence 3556789999887 433388899999999999999964 4667777666655 788777754 4666765544556
Q ss_pred CCcEEecccccccCCcchHHhccCcccceeeec
Q 003265 542 NLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMF 574 (835)
Q Consensus 542 ~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~ 574 (835)
+|+.+.+..+ +..+....+.+. +|+.+.+.
T Consensus 114 ~L~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~ 143 (379)
T 4h09_A 114 DLDDFEFPGA--TTEIGNYIFYNS-SVKRIVIP 143 (379)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEEEC
T ss_pred CcccccCCCc--cccccccccccc-eeeeeecc
Confidence 8999999765 455655534443 56666554
No 235
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.89 E-value=0.012 Score=59.96 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=88.8
Q ss_pred cccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++... .. ..+.+... .
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~~---~~i~~~~~------~ 108 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------D 108 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------H
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---CC---CEEEecHH------H
Confidence 67898877666554432 1 112238999999999999999999876 21 22333321 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc------------c----ccccccCCCCCC-C
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV------------D----LTKVGVPLPGPQ-N 225 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~~-~ 225 (835)
+ .... ..........+.+.. ...+.++|+||+.... . ...+...+.... .
T Consensus 109 ~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 109 F----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp H----HHST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred H----HHHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 1 1100 001111222233332 3467899999984210 0 111211222011 1
Q ss_pred CCcEEEEEccchhhh-----hccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 226 TTSKVVFTTRFIDVC-----GSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 226 ~~s~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
....++.||....+. ....-...+.+...+.++-.+++...+.......+.+ ...++..+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 123344456554432 1112345788998899888888887765433222222 334666777765
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.85 E-value=0.012 Score=59.07 Aligned_cols=170 Identities=21% Similarity=0.231 Sum_probs=87.8
Q ss_pred cccchHHHHHHHHHHhh---c---------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---E---------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++... .. ..+.+... .
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~~---~~i~~~~~------~ 84 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGS------D 84 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---TC---CEEEEEHH------H
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CC---CEEEeeHH------H
Confidence 57888766665544332 1 112348999999999999999999876 22 22333221 1
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc------------c----ccccccCCCCC-CC
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV------------D----LTKVGVPLPGP-QN 225 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~l~~~l~~~-~~ 225 (835)
+ .... ..........+.+.. ...+.++++|++.... . ...+...+... ..
T Consensus 85 ~----~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 85 F----VEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp H----HHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred H----HHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 1 1100 001112222333333 3457899999984210 0 11121112101 11
Q ss_pred CCcEEEEEccchhhhh-c----cCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 226 TTSKVVFTTRFIDVCG-S----MEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 226 ~~s~IivTtR~~~v~~-~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
....++.||....+.. . ..-...+.+...+.++-.+++...+.......+.+ ...+++.+.|.-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 2234444665554421 1 12345788888898888888877664333222222 334666777764
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.81 E-value=0.011 Score=64.83 Aligned_cols=167 Identities=20% Similarity=0.198 Sum_probs=90.9
Q ss_pred cccchHHHHHHHHHHhh---cC---------CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHH
Q 003265 96 KVVGLQSQLEQVWTCLV---EE---------SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEK 163 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 163 (835)
.++|.++.+.++.+... .. -.+-+.|+|++|+||||||+.++... .. ..+.++.+.-..
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE--- 102 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS---
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH---
Confidence 68899887776655432 21 12348999999999999999999886 22 233444332110
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc----CCcEEEEEcccCCcc------------c----ccccccCCCC-
Q 003265 164 LQEDIGKKIGLVGDSWKSRSAEEKALDIFRSLR----GKRIVLLLDDIWERV------------D----LTKVGVPLPG- 222 (835)
Q Consensus 164 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~------------~----~~~l~~~l~~- 222 (835)
.........+...++ ..+.++++|++.... . ...+...+..
T Consensus 103 ------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 000011122333332 245799999995321 0 1112111210
Q ss_pred CCCCCcEEEEEccchhhhh-c-c---CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 223 PQNTTSKVVFTTRFIDVCG-S-M---EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 223 ~~~~~s~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
....+..|+.||....+.. . . .-...+.+...+.++-.+++..++.......+.+ ...|+..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1123345666666655422 1 1 2245788998898888888887664332222222 344666677765
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.77 E-value=0.0046 Score=72.88 Aligned_cols=170 Identities=18% Similarity=0.189 Sum_probs=92.5
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.++|.+..++++.+++.. .....|.|+|++|+||||||+.++... ...| +.+..+.-
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~l---- 274 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPEI---- 274 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHHH----
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchHh----
Confidence 578998888888777642 234579999999999999999999876 2222 33332111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHH-HHHHHHhcCCcEEEEEcccCCccc-------------ccccccCCCC-CCCCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKA-LDIFRSLRGKRIVLLLDDIWERVD-------------LTKVGVPLPG-PQNTT 227 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~l~~~l~~-~~~~~ 227 (835)
... ......... ..+.......+.++++|++..... ...+...+.. ....+
T Consensus 275 ----------~~~----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 275 ----------MSK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ----------SSS----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ----------hhh----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 000 011112222 223333345788999999842110 0111111110 12234
Q ss_pred cEEEEEccchh-hhhcc----CCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcc
Q 003265 228 SKVVFTTRFID-VCGSM----EADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLP 293 (835)
Q Consensus 228 s~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 293 (835)
..+|.||.... +...+ .-...+.+...+.++-.+++...+.........++ ..++..+.|.-
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 55666665532 22211 12345778888899999998877654332222222 33445566653
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.0056 Score=68.69 Aligned_cols=45 Identities=31% Similarity=0.414 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHHHhh------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLV------EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+.....+.+.+. .....++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46788877777655442 1245689999999999999999999886
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.72 E-value=0.031 Score=56.55 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=81.5
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.++.+++|.+.+.. .-.+-+.|+|++|+||||||+.++... .. ..+.+....-.+.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLNM- 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCSS-
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHhh-
Confidence 577888888877765421 112349999999999999999999976 21 2344443221110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCccc---------c----cccccCCCC-CCCCC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERVD---------L----TKVGVPLPG-PQNTT 227 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~----~~l~~~l~~-~~~~~ 227 (835)
........+..+.+.. ...+.++++|++..... . ..+...+.. .....
T Consensus 84 -----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 -----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred -----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0000111222222222 35678999999854210 0 001111110 11123
Q ss_pred cEEEEEccchhhhhc-----cCCCceEEeccCChHHHHHHHHHHhC
Q 003265 228 SKVVFTTRFIDVCGS-----MEADRKFLVACLSEKDAWELFREKVG 268 (835)
Q Consensus 228 s~IivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~ 268 (835)
..++.+|....+... ..-...+.+...+.++-.+++.....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 345556666554221 13356788888899999999987764
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.58 E-value=0.0012 Score=67.20 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEe--cCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV--SKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
.+++.|+|++|+|||+||.+++... . ..++|+++ ....+ . ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v~-------------~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPLS-------------G-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSST-------------T-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhhh-------------h-----hhcCHHHHHHHHHH
Confidence 4577899999999999999998752 1 12456665 22210 0 01345666666777
Q ss_pred HhcCCcEEEEEcccC
Q 003265 194 SLRGKRIVLLLDDIW 208 (835)
Q Consensus 194 ~l~~k~~LlVlDdv~ 208 (835)
.+...+ +||+|++.
T Consensus 179 ~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHCS-EEEEECCT
T ss_pred HHhhCC-EEEEeccc
Confidence 776666 99999983
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.48 E-value=0.0077 Score=58.80 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCC-----------CCCCCCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGL-----------VGDSWKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~~~~~~~ 183 (835)
.-.++.|+|++|+||||||..++. . . -..++|+......+...+.. +.+.++. ... .....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTP-SDFKE 90 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECC-TTTSH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEec-CCHHH
Confidence 456999999999999999999987 3 1 13578887766445544433 3332221 110 01112
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccC
Q 003265 184 AEEKALDIFRSLRGKRIVLLLDDIW 208 (835)
Q Consensus 184 ~~~~~~~l~~~l~~k~~LlVlDdv~ 208 (835)
.......+...+..++-+||+|.+.
T Consensus 91 ~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 91 QRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 2334444555554457799999973
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.39 E-value=0.0068 Score=63.41 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++.|.|++|+||||||.+++... .. .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-QK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 45799999999999999999998876 22 12347888877666543 45555543211 1234556666666
Q ss_pred HHHhc-CCcEEEEEcccC
Q 003265 192 FRSLR-GKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l~-~k~~LlVlDdv~ 208 (835)
...++ .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 65554 456699999984
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.32 E-value=0.0033 Score=64.95 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhhcC---CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 100 LQSQLEQVWTCLVEE---SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 100 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+...++.+.+++..- ....+.|+|++|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334445555666542 24788999999999999999999987
No 245
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.31 E-value=0.02 Score=60.25 Aligned_cols=164 Identities=11% Similarity=-0.049 Sum_probs=100.0
Q ss_pred HHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 003265 107 VWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEE 186 (835)
Q Consensus 107 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 186 (835)
+.+.+...-.++..++|+.|.||++.++.+..... ...|+....+.+....++.++...
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~------------------- 67 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSL------------------- 67 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHH-------------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHH-------------------
Confidence 33444434567899999999999999999988651 123432111222222333333222
Q ss_pred HHHHHHH-HhcCCcEEEEEcccCC---cccccccccCCCCCCCCCcEEEEEccc-------hhhhhc-cCCCceEEeccC
Q 003265 187 KALDIFR-SLRGKRIVLLLDDIWE---RVDLTKVGVPLPGPQNTTSKVVFTTRF-------IDVCGS-MEADRKFLVACL 254 (835)
Q Consensus 187 ~~~~l~~-~l~~k~~LlVlDdv~~---~~~~~~l~~~l~~~~~~~s~IivTtR~-------~~v~~~-~~~~~~~~l~~L 254 (835)
+.. -+-+++-++|+|++.. ...++.+...+. ....++.+|+++.. ..+... .+....++..++
T Consensus 68 ----~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l 142 (343)
T 1jr3_D 68 ----CQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTP 142 (343)
T ss_dssp ----HHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCC
T ss_pred ----hcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCC
Confidence 211 1235667888999854 244555655554 44456777766532 123222 334578999999
Q ss_pred ChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCcchHHHHH
Q 003265 255 SEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGLPLALITI 299 (835)
Q Consensus 255 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 299 (835)
+.++....+.+.+.......+ .+.+..+++.++|...++...
T Consensus 143 ~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 143 EQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 999999888887754332222 367788999999988776653
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.30 E-value=0.011 Score=58.84 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCC----C---CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD----S---WKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 183 (835)
.-.++.|+|++|+|||||++.++... .... .-..++|+.....+....+. ++++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 45699999999999999999998863 1111 23578898877654444332 33444433210 0 01122
Q ss_pred HHH---HHHHHHHHhc-CCcEEEEEcccC
Q 003265 184 AEE---KALDIFRSLR-GKRIVLLLDDIW 208 (835)
Q Consensus 184 ~~~---~~~~l~~~l~-~k~~LlVlDdv~ 208 (835)
..+ ....+.+.+. .+.-+||+|++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 222 2333444443 467799999973
No 247
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.19 E-value=0.013 Score=68.99 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHhhc---------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE---------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 578999988888777652 123478999999999999999999876
No 248
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.18 E-value=0.0022 Score=60.43 Aligned_cols=118 Identities=21% Similarity=0.172 Sum_probs=61.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC---ccCHHHHHHHHHHHhCCCCCC--CCCCC-------
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK---DLRLEKLQEDIGKKIGLVGDS--WKSRS------- 183 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~~~~~--~~~~~------- 183 (835)
...|.|++..|.||||.|--.+-+. .++=-.+.++..-. ......++..+.-.+...... +...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 4566777777799999998887776 22222455554333 223333333331000000000 11111
Q ss_pred HHHHHHHHHHHhcCCcE-EEEEcccCC-----cccccccccCCCCCCCCCcEEEEEccch
Q 003265 184 AEEKALDIFRSLRGKRI-VLLLDDIWE-----RVDLTKVGVPLPGPQNTTSKVVFTTRFI 237 (835)
Q Consensus 184 ~~~~~~~l~~~l~~k~~-LlVlDdv~~-----~~~~~~l~~~l~~~~~~~s~IivTtR~~ 237 (835)
........++.+.+.+| |||||++-. ..+.+++...+. .......||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 12233345555655555 999999832 233333433333 344567899999984
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.07 E-value=0.016 Score=60.37 Aligned_cols=91 Identities=16% Similarity=0.316 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS-------WKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 183 (835)
.-.++.|+|.+|+||||||.+++... .... .-..++|++....++...+. ++++.++...+. ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCC
Confidence 45699999999999999999998765 2111 13478999888876666554 344555432100 01122
Q ss_pred HH---HHHHHHHHHhc--CCcEEEEEccc
Q 003265 184 AE---EKALDIFRSLR--GKRIVLLLDDI 207 (835)
Q Consensus 184 ~~---~~~~~l~~~l~--~k~~LlVlDdv 207 (835)
.+ +....+...++ .+.-+||+|.+
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 22 23444555553 45668889987
No 250
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.06 E-value=0.007 Score=61.17 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=40.5
Q ss_pred cccchHHHHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc
Q 003265 96 KVVGLQSQLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 158 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 158 (835)
.++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++.. .. .. ...+.++++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~-~~-~~-~~~~~v~~~~~ 68 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS-SR-WQ-GPFISLNCAAL 68 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS-TT-TT-SCEEEEEGGGS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc-Cc-cC-CCeEEEecCCC
Confidence 578999988888777653 333567799999999999999999876 21 11 22345655543
No 251
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.05 E-value=0.022 Score=59.73 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCC----CCCeEEEEEecCccCHHHHHHHHHHHhCCCCC----------CCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD----------SWK 180 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~ 180 (835)
.-.++.|+|.+|+||||||.+++... .... .-..++|++....++...+. ++++.++.... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 45799999999999999999988864 1111 23478999988876666554 34444443210 001
Q ss_pred CCCHHHHHHHHHHHhc---CCcEEEEEccc
Q 003265 181 SRSAEEKALDIFRSLR---GKRIVLLLDDI 207 (835)
Q Consensus 181 ~~~~~~~~~~l~~~l~---~k~~LlVlDdv 207 (835)
..........+.+.++ .+.-+||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 1112233334444443 45568888887
No 252
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.03 E-value=0.0024 Score=62.10 Aligned_cols=113 Identities=17% Similarity=-0.039 Sum_probs=61.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFRS 194 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 194 (835)
.-.++.|+|..|.||||++..+..+. . ..-..++.+...... . ...++++.++...+........+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~--~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-E--YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-H--HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999888877 2 222234444333221 1 2224455554432221222334444444444
Q ss_pred hcCCcE-EEEEcccCCc--ccccccccCCCCCCCCCcEEEEEccch
Q 003265 195 LRGKRI-VLLLDDIWER--VDLTKVGVPLPGPQNTTSKVVFTTRFI 237 (835)
Q Consensus 195 l~~k~~-LlVlDdv~~~--~~~~~l~~~l~~~~~~~s~IivTtR~~ 237 (835)
+.+.++ +||+|.+... ...+.+. .+. + .|..||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~-~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILA-E--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHH-H--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHH-h--CCCeEEEEeccc
Confidence 444444 9999998431 2222221 121 1 267788888853
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.03 E-value=0.016 Score=58.75 Aligned_cols=87 Identities=13% Similarity=0.147 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHH-HHHHH
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEK-ALDIF 192 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~-~~~l~ 192 (835)
.++-|.|++|+||||||.+++... .....-..++||+....++.. .+++++...+. ....+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 378999999999999999887776 221113468999887777653 36666654321 122344554 33333
Q ss_pred HH--h-cCCcEEEEEcccCC
Q 003265 193 RS--L-RGKRIVLLLDDIWE 209 (835)
Q Consensus 193 ~~--l-~~k~~LlVlDdv~~ 209 (835)
.. + +++.-+||+|-|-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 45778999999843
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.02 E-value=0.015 Score=61.37 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++.|.|.+|+||||||.+++... .. .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~-~~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA-QK--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH-HH--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 44689999999999999999988776 21 12368999988766543 24444432210 0123556666666
Q ss_pred HHHhcC-CcEEEEEcccC
Q 003265 192 FRSLRG-KRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l~~-k~~LlVlDdv~ 208 (835)
....+. ..-+||+|.+-
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 666543 45699999983
No 255
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.90 E-value=0.017 Score=60.57 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-+++.|+|++|+||||||.+++... .. .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-Hh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999988765 21 22458899887766543 24455432211 0123455555555
Q ss_pred HHHhc-CCcEEEEEcccC
Q 003265 192 FRSLR-GKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l~-~k~~LlVlDdv~ 208 (835)
....+ .+.-+||+|.+-
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 54543 456799999984
No 256
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.89 E-value=0.0091 Score=71.22 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHHHhhcC---------CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEE---------SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689998888887776531 23578999999999999999999886
No 257
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.89 E-value=0.0095 Score=61.98 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=53.7
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCCCCCCCC
Q 003265 106 QVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGDSWKSRS 183 (835)
Q Consensus 106 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 183 (835)
++++.+.. ..-..++|+|++|+|||||++.+.+...+....+. ++++-+.+.. .+.++.+.+-..+-... ....
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~at---adep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVAST---FDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEEC---TTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeC---CCCC
Confidence 34555544 45568999999999999999998876521122343 3456676654 23333332210000011 1112
Q ss_pred HHHHHH------HHHHHh--cCCcEEEEEcccC
Q 003265 184 AEEKAL------DIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 184 ~~~~~~------~l~~~l--~~k~~LlVlDdv~ 208 (835)
...... .+.+.+ +++.+||++||+.
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 111111 122223 5899999999984
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.83 E-value=0.0096 Score=57.25 Aligned_cols=42 Identities=19% Similarity=0.446 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHhhc---CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 99 GLQSQLEQVWTCLVE---ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 99 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|++.++.+.+.+.. ....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677788877764 355799999999999999999998865
No 259
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.62 E-value=0.012 Score=51.90 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=25.7
Q ss_pred EEeecccccc--ccchhhcCCCCCcEEecccccccCCcchHHhccCcccceeeecCcC
Q 003265 522 LFDISLTLIK--ELPEELKKLVNLKCLNLRWAYRLNKIPRQLISNYSRLCVLRMFGTG 577 (835)
Q Consensus 522 ~L~L~~~~i~--~Lp~~i~~L~~L~~L~L~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 577 (835)
.++.+++.++ .+|..+. .+|++|+|++| .+..+|.+++..+++|++|++.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 3444444444 4443321 34555555555 4555555445555555555555544
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.59 E-value=0.025 Score=59.43 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW---KSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 191 (835)
.-+++.|.|.+|+||||||.+++... ... -..++|++....++.. .++.++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 45699999999999999999988776 221 2368899887766643 244454322110 122345555444
Q ss_pred HHHh-cCCcEEEEEccc
Q 003265 192 FRSL-RGKRIVLLLDDI 207 (835)
Q Consensus 192 ~~~l-~~k~~LlVlDdv 207 (835)
.... +.+.-+||+|.+
T Consensus 134 ~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 134 DALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHHTCCSEEEEECG
T ss_pred HHHHhccCCCEEEEcCH
Confidence 4443 345569999998
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.52 E-value=0.065 Score=57.53 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998877
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.47 E-value=0.04 Score=56.27 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=47.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC-ccCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKLQEDIGKKIGLVGDSWKSRSAEEKALDIFR 193 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 193 (835)
...+++|+|.+|+||||++..++... ..... ..+..+.... .....+.+....+..+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999998876 22122 2344554332 22333334444444433221 1123333333333
Q ss_pred HhcCCcEEEEEccc
Q 003265 194 SLRGKRIVLLLDDI 207 (835)
Q Consensus 194 ~l~~k~~LlVlDdv 207 (835)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 23 34457888843
No 263
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.45 E-value=0.098 Score=56.15 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=46.9
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHH
Q 003265 106 QVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKK 171 (835)
Q Consensus 106 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~ 171 (835)
+.++.+.. ..-..++|+|.+|+|||+|+..+.+... +.+-+.++++-+.+.. .+.++.+++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 35566654 4556899999999999999999988751 3445677888787765 466777777664
No 264
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.44 E-value=0.025 Score=58.85 Aligned_cols=91 Identities=15% Similarity=0.316 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC------------CCC--CeEEEEEecCccCHHHHHHHHHHHhCCCCCC--
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP------------TNF--DCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS-- 178 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-- 178 (835)
.-.++.|+|.+|+|||+||.+++... ... +.. ..++|++....++...+.. +++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~-~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL-QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT-TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 45799999999999999999988753 111 111 4789999888776665553 34555432100
Q ss_pred -----CCCCCHH---HHHHHHHHHhcC--CcEEEEEccc
Q 003265 179 -----WKSRSAE---EKALDIFRSLRG--KRIVLLLDDI 207 (835)
Q Consensus 179 -----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 207 (835)
....+.+ +....+.+.++. +.-+||+|.+
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 233445555543 4458888887
No 265
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.31 E-value=0.036 Score=54.41 Aligned_cols=40 Identities=33% Similarity=0.336 Sum_probs=28.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
.-.+++|.|++|+|||||++.++.... . .-..++|+....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~--~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL-R--DGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH-H--HTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH-H--CCCeEEEEEccc
Confidence 346899999999999999999986651 1 112466665433
No 266
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.30 E-value=0.095 Score=60.79 Aligned_cols=169 Identities=18% Similarity=0.261 Sum_probs=79.0
Q ss_pred cccchHHHHHHHHHHhhc-------------CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHH
Q 003265 96 KVVGLQSQLEQVWTCLVE-------------ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 162 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 162 (835)
.+.|.++.+++|.+.+.- ...+-|.++|++|.|||.+|+++++.. ... ++.++..
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~~---- 545 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKGP---- 545 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCHH----
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEeccc----
Confidence 456888888877666531 134567899999999999999999987 222 2333221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEcccCCcc--------c--------ccccccCCCC-CC
Q 003265 163 KLQEDIGKKIGLVGDSWKSRSAEEKALDIFRSL-RGKRIVLLLDDIWERV--------D--------LTKVGVPLPG-PQ 224 (835)
Q Consensus 163 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~--------~~~l~~~l~~-~~ 224 (835)
+++... .... +..+..+.+.- +..+.+|+||+++... + ..++...+.. ..
T Consensus 546 ----~l~s~~-------vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 546 ----ELLTMW-------FGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp ----HHHTTT-------CSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred ----hhhccc-------cchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 122211 1222 23344444433 5679999999995320 0 0111111110 11
Q ss_pred CCCcEEEEEccchh-h----hhccCCCceEEeccCChHHHHHHHHHHhCCCCcCCChhHHHHHHHHHHHcCCc
Q 003265 225 NTTSKVVFTTRFID-V----CGSMEADRKFLVACLSEKDAWELFREKVGEETLKSDHDIAELAQIVAKECVGL 292 (835)
Q Consensus 225 ~~~s~IivTtR~~~-v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 292 (835)
..+.-||-||.... + ...-.-.+.+.+..-+.++-.++|..++.......+-++.. +++.+.|.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~----la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF----LAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHH----HHHhCCCC
Confidence 22333443554433 2 11112356777776677777778877665443333333433 44555554
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.21 E-value=0.016 Score=56.00 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=30.0
Q ss_pred HHHHHHHHhhc--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 103 QLEQVWTCLVE--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 103 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-+++|.+.+.. ....+|+|+|+.|.|||||++.+....
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555565553 456799999999999999999998876
No 268
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.13 E-value=0.022 Score=55.83 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 101 QSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 101 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++..+.+.+.+......+|.|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4445556566656678899999999999999999998875
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.10 E-value=0.05 Score=57.99 Aligned_cols=91 Identities=16% Similarity=0.267 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS-------WKSRS 183 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 183 (835)
.-.++.|+|++|+|||||+..++-.. ... ..-..++|++....+....+ ..+++.++..... ....+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~-~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC-QIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh-ccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCC
Confidence 45699999999999999999776433 111 12356889887766554443 3355555532100 01112
Q ss_pred HH---HHHHHHHHHh-cCCcEEEEEccc
Q 003265 184 AE---EKALDIFRSL-RGKRIVLLLDDI 207 (835)
Q Consensus 184 ~~---~~~~~l~~~l-~~k~~LlVlDdv 207 (835)
.. .....+...+ ..+.-+||+|.+
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 22 2223333333 346678888986
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.01 E-value=0.013 Score=54.95 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.01 E-value=0.013 Score=54.65 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 272
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.97 E-value=0.066 Score=57.64 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=55.1
Q ss_pred HHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CCCC
Q 003265 108 WTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SWKS 181 (835)
Q Consensus 108 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~ 181 (835)
++.|.. ..-..++|+|.+|+|||||++.+.... .. ..-+..+++-+.+.. ...++++++...-..... ....
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~-~~-~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~ 219 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI-AQ-EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMN 219 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH-HH-HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTT
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh-hh-ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCC
Confidence 444443 233468899999999999999988775 11 122445667776654 445666655432110000 0011
Q ss_pred CCHHHH------HHHHHHHh---cCCcEEEEEcccC
Q 003265 182 RSAEEK------ALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 182 ~~~~~~------~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
.+.... .-.+.+++ +++.+|+++||+.
T Consensus 220 d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 220 EPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111111 11223332 5899999999983
No 273
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.95 E-value=0.13 Score=55.23 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.++|++|+||||++..++...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998877
No 274
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.93 E-value=0.018 Score=60.37 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|+++.++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999888877664 367899999999999999999876
No 275
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.90 E-value=0.084 Score=54.56 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.-.++.|.|.+|+||||||..++... ...+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 45689999999999999999998776 2222 567888765 3455666655544
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.82 E-value=0.058 Score=56.59 Aligned_cols=92 Identities=22% Similarity=0.362 Sum_probs=52.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCC----CCeEEEEEecCccCHHHHHHHHHHHhCCCCC----------CCC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTN----FDCVIWVVVSKDLRLEKLQEDIGKKIGLVGD----------SWK 180 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~ 180 (835)
.-.++.|+|+.|+|||||++.++... ..... -..++|++....+....+ ..+++..+.... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 55799999999999999999998765 21111 124589887665433332 334444332110 000
Q ss_pred CCCHHHHHHHHHHHhc------CCcEEEEEcccC
Q 003265 181 SRSAEEKALDIFRSLR------GKRIVLLLDDIW 208 (835)
Q Consensus 181 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~ 208 (835)
.....+....+...+. .++-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 0112233344444443 467799999974
No 277
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.80 E-value=0.14 Score=52.97 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+++|+|+.|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 278
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.80 E-value=0.032 Score=57.78 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHHhh----cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 98 VGLQSQLEQVWTCLV----EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 98 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|+.++-++++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455566666666664 3556679999999999999999988875
No 279
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.77 E-value=0.083 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|.|.|++|+||+|.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.77 E-value=0.017 Score=55.33 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.|+|+.|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 281
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.77 E-value=0.024 Score=55.31 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 98 VGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-+.++..+.+.+.+.....++|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445566666666655678899999999999999999998875
No 282
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.76 E-value=0.024 Score=62.40 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 6899999998888777654 367899999999999999999876
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.75 E-value=0.016 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.70 E-value=0.08 Score=54.19 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCH--HHHHHHHHHHhCCCC-CCCCCCCHHHH-HHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL--EKLQEDIGKKIGLVG-DSWKSRSAEEK-ALD 190 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~-~~~~~~~~~~~-~~~ 190 (835)
...+|.|+|++|+||||++..++... ... -..+.++... .+.. .+-+...++..+.+. ......+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VDE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HHT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hhc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 35699999999999999999998877 221 1234444432 2221 222334444444321 00112233332 234
Q ss_pred HHHHhcCCcEEEEEccc
Q 003265 191 IFRSLRGKRIVLLLDDI 207 (835)
Q Consensus 191 l~~~l~~k~~LlVlDdv 207 (835)
+...+..+.-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 55555556668888975
No 285
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.67 E-value=0.029 Score=59.55 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhh-------------c--CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLV-------------E--ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899998888887772 1 134578899999999999999999986
No 286
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.66 E-value=0.087 Score=56.82 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=63.7
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCC-------CC
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLV-------GD 177 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~ 177 (835)
.++.|.. ..-..++|+|.+|+|||+|+..+.+... +.+-+.++++-+.+.. ...++.+++...-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4566654 4456899999999999999999988751 3455788888887765 5667777776542221 00
Q ss_pred ----CCCCCCHH------HHHHHHHHHh---cCCcEEEEEcccC
Q 003265 178 ----SWKSRSAE------EKALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 178 ----~~~~~~~~------~~~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
...+.... ...-.+.+++ +++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111211 2222334444 4689999999983
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.57 E-value=0.02 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998865
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.55 E-value=0.021 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+++|+|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998754
No 289
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.53 E-value=0.02 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+.|.|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.50 E-value=0.018 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|+|+|+.|+||||+++.++...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.46 E-value=0.022 Score=53.47 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINN 138 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~ 138 (835)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 292
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.44 E-value=0.036 Score=59.14 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHhh------------------------------cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLV------------------------------EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 56898888888776662 0123568899999999999999999876
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.41 E-value=0.04 Score=56.06 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988876
No 294
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.40 E-value=0.24 Score=50.93 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHhhc----CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 98 VGLQSQLEQVWTCLVE----ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 98 vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|-...+..+...+.. ....+|+|.|+.|+||||+++.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444445544444433 234599999999999999999998776
No 295
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.39 E-value=0.018 Score=59.88 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=35.6
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc
Q 003265 106 QVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL 159 (835)
Q Consensus 106 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 159 (835)
++++.+.. ..-..++|+|.+|+|||+|+..+.+........+. ++++-+.+..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 45666655 45568899999999999999999887521112333 3456666543
No 296
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.39 E-value=0.22 Score=53.73 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++|.|+|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998887
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.37 E-value=0.024 Score=53.54 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.36 E-value=0.017 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
|.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998876
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.33 E-value=0.029 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|+|+.|.||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999887
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.30 E-value=0.024 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.28 E-value=0.026 Score=54.10 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|+|+.|+||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998875
No 302
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.26 E-value=0.021 Score=60.22 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..+..+...+......-+.|+|++|+|||++|+.+++..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 578998866665444433333448899999999999999999876
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.18 E-value=0.022 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.17 E-value=0.026 Score=53.50 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|++|+||||+++.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 305
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.15 E-value=0.041 Score=48.41 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=40.0
Q ss_pred EEEeecCCCCcccc--ccCchHhhhhhcccEEeeccccccccchh-hcCCCCCcEEeccccc
Q 003265 494 VLKMSYCGQSWSSF--QLPVGMSELGSSLQLFDISLTLIKELPEE-LKKLVNLKCLNLRWAY 552 (835)
Q Consensus 494 ~L~Ls~~~~~~~i~--~lp~~i~~l~~~L~~L~L~~~~i~~Lp~~-i~~L~~L~~L~L~~~~ 552 (835)
+++.+++ .++ .+|..+ .++|++|+|++|.|+.||.. +..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~----~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR----GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS----CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC----CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 6777777 676 777543 34788999999999888765 5778889999998874
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.13 E-value=0.031 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.12 E-value=0.025 Score=53.13 Aligned_cols=25 Identities=44% Similarity=0.391 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.|.|++|+||||+|+.++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.08 E-value=0.031 Score=53.92 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.04 E-value=0.03 Score=52.43 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.02 E-value=0.027 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998876
No 311
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.01 E-value=0.025 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999887
No 312
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.00 E-value=0.035 Score=51.81 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.99 E-value=0.031 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|.|+.|+||||+|+.++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999886
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.95 E-value=0.034 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 315
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.94 E-value=0.14 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++.|+|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999887
No 316
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.94 E-value=0.031 Score=55.84 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999999876
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.89 E-value=0.031 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|+|.|+.|+||||+++.++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.88 E-value=0.055 Score=55.09 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998875
No 319
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.85 E-value=0.12 Score=65.52 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=57.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW---KSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 191 (835)
..++|.|+|++|+|||+||.++.... . ..=..++|+++...++... ++.++..-+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea-~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 56799999999999999999998876 2 2233578888877766554 44454221110 122345555555
Q ss_pred HHHh-cCCcEEEEEcccC
Q 003265 192 FRSL-RGKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l-~~k~~LlVlDdv~ 208 (835)
++.. +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5554 4567799999984
No 320
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.83 E-value=0.23 Score=50.61 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=49.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCc-cCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHH
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKLQEDIGKKIGLVGDS-WKSRSAEEKALDIFR 193 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 193 (835)
..+++++|.+|+||||++..++... ... -..+.++..... ....+.+.......+.+--. ....+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 5689999999999999999998877 221 223555554322 22233334444444432100 012344455444444
Q ss_pred HhcCCcE-EEEEccc
Q 003265 194 SLRGKRI-VLLLDDI 207 (835)
Q Consensus 194 ~l~~k~~-LlVlDdv 207 (835)
.++.+.| ++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4442333 7888875
No 321
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.83 E-value=0.24 Score=53.73 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45699999999999999999998876
No 322
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.82 E-value=0.036 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|.|++|+||||+|+.++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.81 E-value=0.035 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
.+++|+|+.|.|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999764
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.81 E-value=0.038 Score=52.13 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
...|+|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999987
No 325
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.81 E-value=0.029 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 326
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.77 E-value=0.048 Score=58.61 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHhhc--------------CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVE--------------ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 578998888888666522 134568899999999999999999987
No 327
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.77 E-value=0.039 Score=53.27 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...++|.|.|++|+||||.|+.++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999887
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.75 E-value=0.036 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|+|+.|+|||||++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5699999999999999999999776
No 329
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.73 E-value=0.028 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.73 E-value=0.042 Score=52.70 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|.|+.|+||||+|+.++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 331
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.71 E-value=0.041 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998775
No 332
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.66 E-value=0.041 Score=53.18 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|+|+.|.|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998875
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.66 E-value=0.039 Score=52.41 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 334
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.64 E-value=0.042 Score=52.79 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 335
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.63 E-value=0.038 Score=56.88 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=29.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEec
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS 156 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 156 (835)
+..+||+|.|-|||||||.+-.++.-+. ..+ . .+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA-~~G-k-kVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS-ILG-K-RVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH-HTT-C-CEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH-HCC-C-eEEEEecC
Confidence 5679999999999999999998887772 222 2 35556554
No 336
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.58 E-value=0.054 Score=51.13 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=27.9
Q ss_pred HHHHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 104 LEQVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 104 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+..+..++.. .....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455555544 223479999999999999999999886
No 337
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.58 E-value=0.034 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHI 136 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v 136 (835)
...+++|+|+.|.|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999964
No 338
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.58 E-value=0.038 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINN 138 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~ 138 (835)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.57 E-value=0.041 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..|+|.|++|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.57 E-value=0.038 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.56 E-value=0.033 Score=51.77 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.55 E-value=0.039 Score=52.64 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 343
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.53 E-value=0.034 Score=53.20 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 344
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.44 E-value=0.05 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999874
No 345
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.44 E-value=0.047 Score=52.57 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|+|+.|.||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998764
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.44 E-value=0.047 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 347
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.40 E-value=0.074 Score=56.73 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=57.8
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCC----eEEEEEecCcc-CHHHHHHHHHHHhCCCCC---
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD----CVIWVVVSKDL-RLEKLQEDIGKKIGLVGD--- 177 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~--- 177 (835)
.++.+.. ..-..++|.|..|+|||+|+.++++.. . .+-+ .++++-+.+.. .+.++.+++...-.+...
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV 217 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-T--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMF 217 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-B--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-H--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEE
Confidence 4455543 333457899999999999999999886 2 2223 56667666554 566777776553111100
Q ss_pred -CCCCCCHHHH------HHHHHHHh---cCCcEEEEEcccC
Q 003265 178 -SWKSRSAEEK------ALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 178 -~~~~~~~~~~------~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
...+...... .-.+.+++ .++.+|+++||+-
T Consensus 218 ~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 218 MNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0011222211 12233444 3789999999983
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.40 E-value=0.048 Score=50.16 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++++|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 349
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.39 E-value=0.12 Score=48.68 Aligned_cols=84 Identities=6% Similarity=-0.024 Sum_probs=40.8
Q ss_pred CCCCcceEEEeccCCcc-----cccchhhcCCCcceEEEeecCCCCccccc-----cCchHhhhhhcccEEeecccccc-
Q 003265 463 PKCPHLLTLFLDFNQEL-----KIADGFFQFMPSLKVLKMSYCGQSWSSFQ-----LPVGMSELGSSLQLFDISLTLIK- 531 (835)
Q Consensus 463 ~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~Lr~L~Ls~~~~~~~i~~-----lp~~i~~l~~~L~~L~L~~~~i~- 531 (835)
..-+.|+.|+|++++.+ ......+..-+.|+.|+|++| .+.. +-..+..=. .|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n----~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT----AISDSEARGLIELIETSP-SLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS----CCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC----CCChHHHHHHHHHHhcCC-ccCeEecCCCcCCH
Confidence 34456677777644222 111222455566777777777 4432 222222222 5666666666554
Q ss_pred ----ccchhhcCCCCCcEEecccc
Q 003265 532 ----ELPEELKKLVNLKCLNLRWA 551 (835)
Q Consensus 532 ----~Lp~~i~~L~~L~~L~L~~~ 551 (835)
.|-+.+..-+.|++|+|++|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 22333333444566665543
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.39 E-value=0.087 Score=52.15 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.....|+|.|++|+||||+|+.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355689999999999999999998876
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.38 E-value=0.049 Score=54.34 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998875
No 352
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.37 E-value=0.048 Score=54.67 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.36 E-value=0.032 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=18.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.31 E-value=0.047 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 355
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.30 E-value=0.047 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.25 E-value=0.047 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.24 E-value=0.047 Score=52.53 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINN 138 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~ 138 (835)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.19 E-value=0.14 Score=49.94 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCC----CCCCeEEEEEecCc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKD 158 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~ 158 (835)
.-.+++|+|+.|+|||||++.++... ... ..-..++|+.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCC
Confidence 45799999999999999999998754 111 12345788776543
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.19 E-value=0.049 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.15 E-value=0.048 Score=52.51 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345699999999999999999998876
No 361
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.11 E-value=0.22 Score=51.56 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.-.++.|.|.+|+||||||..++.... . .-..++|++.. .+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL-N--DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H--TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 446899999999999999999988862 2 22356776653 3455666655543
No 362
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.09 E-value=0.064 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999876
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.07 E-value=0.054 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|.|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999876
No 364
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.05 E-value=0.058 Score=55.49 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|+|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 455799999999999999999998876
No 365
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.01 E-value=0.5 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.|+|.+|+||||++..++...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998876
No 366
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.01 E-value=0.067 Score=48.82 Aligned_cols=27 Identities=37% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455799999999999999999998865
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.00 E-value=0.06 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|+|+.|.||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999876
No 368
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.00 E-value=0.15 Score=52.51 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998877
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.98 E-value=0.059 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.95 E-value=0.059 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|.|.|++|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 371
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.94 E-value=0.059 Score=51.05 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998874
No 372
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.92 E-value=0.078 Score=50.02 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=45.0
Q ss_pred hcCCCcceEEEeecCCCCccccc-----cCchHhhhhhcccEEeecccccc-----ccchhhcCCCCCcEEecccccccC
Q 003265 486 FQFMPSLKVLKMSYCGQSWSSFQ-----LPVGMSELGSSLQLFDISLTLIK-----ELPEELKKLVNLKCLNLRWAYRLN 555 (835)
Q Consensus 486 ~~~l~~Lr~L~Ls~~~~~~~i~~-----lp~~i~~l~~~L~~L~L~~~~i~-----~Lp~~i~~L~~L~~L~L~~~~~l~ 555 (835)
+.+-+.|+.|+|+++. .|.. +-..+..-. .|+.|+|++|.|. .|.+.+..=+.|++|+|++| .+.
T Consensus 37 l~~n~~L~~L~L~~nn---~igd~ga~~la~aL~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMK---RVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCC---SSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HhcCCCccEEECCCCC---CCCHHHHHHHHHHHhhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCC
Confidence 4556678888887641 2221 222333333 6777777777665 23444445566777777766 333
Q ss_pred Ccch----HHhccCcccceeeecCc
Q 003265 556 KIPR----QLISNYSRLCVLRMFGT 576 (835)
Q Consensus 556 ~lp~----~~i~~L~~L~~L~l~~~ 576 (835)
.-.. ..+..=+.|++|+++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 2110 01233345666666543
No 373
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.92 E-value=0.065 Score=53.19 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|.|+.|.|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998764
No 374
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.89 E-value=0.061 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 375
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.87 E-value=0.052 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.83 E-value=0.058 Score=52.28 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.78 E-value=0.061 Score=52.19 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999998876
No 378
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.77 E-value=0.061 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 379
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.76 E-value=0.26 Score=50.26 Aligned_cols=90 Identities=18% Similarity=0.162 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHH-H
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGDS-WKSRSAEEKALD-I 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~-l 191 (835)
...+++|+|.+|+||||++..++... ... -..+.++...... .....+.......+...-. ....+..++... +
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~-~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH-HHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 35699999999999999999998877 221 1234444432211 1112223344444332110 012344444333 3
Q ss_pred HHHhcCCcEEEEEccc
Q 003265 192 FRSLRGKRIVLLLDDI 207 (835)
Q Consensus 192 ~~~l~~k~~LlVlDdv 207 (835)
......+.=++|+|--
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333344457888875
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.73 E-value=0.058 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|.|.|++|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 381
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.73 E-value=0.27 Score=53.11 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=56.8
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCC-eEEEEEecCcc-CHHHHHHHHHHHhCCCCC----C
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFD-CVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----S 178 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 178 (835)
.++.+.. ..-..++|+|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...-.+... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 4555544 34567899999999999995 5777754 244 34677777654 466777776653211100 0
Q ss_pred CCCCCHHHH------HHHHHHHh--cCCcEEEEEcccC
Q 003265 179 WKSRSAEEK------ALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 179 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
......... .-.+.+++ +++.+|+++||+.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 011121111 11233334 5799999999984
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.66 E-value=0.065 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998875
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.64 E-value=0.065 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.59 E-value=0.036 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 385
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.57 E-value=0.36 Score=52.12 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=57.3
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCC-eEEEEEecCcc-CHHHHHHHHHHHhCCCCC----C
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFD-CVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----S 178 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 178 (835)
.++.+.. ..-..++|+|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...-.+... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4555554 34567889999999999995 5777764 234 34677777654 466777777653222110 0
Q ss_pred CCCCCHHHH------HHHHHHHh--cCCcEEEEEcccC
Q 003265 179 WKSRSAEEK------ALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 179 ~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
......... .-.+.+++ +++.+|+++||+.
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 011221111 11233333 5799999999984
No 386
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.56 E-value=0.072 Score=54.57 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 387
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.53 E-value=0.13 Score=54.10 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=29.2
Q ss_pred HHHHHHHhh--cCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 104 LEQVWTCLV--EESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 104 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..++.+.+. .....+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554 3567899999999999999999988776
No 388
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.52 E-value=0.16 Score=54.97 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCC-eEEEEEecCcc-CHHHHHHHHHHHhCCC--------CCCCC--C
Q 003265 115 SAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFD-CVIWVVVSKDL-RLEKLQEDIGKKIGLV--------GDSWK--S 181 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~--~ 181 (835)
.-..++|+|.+|+|||+|| ..+.+.. . -+ .++++-+.+.. .+.++.+.+...-.+. .++.. .
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3457889999999999995 5777754 2 34 35777777654 4556666665421111 11101 1
Q ss_pred CCHHHHHHHHHHHh--cCCcEEEEEcccC
Q 003265 182 RSAEEKALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 182 ~~~~~~~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.-.....-.+.+++ +++.+|+++||+.
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11111222223333 6899999999983
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.50 E-value=0.059 Score=50.88 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998775
No 390
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.41 E-value=0.18 Score=57.37 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5789998888887777655 588999999999999999999976
No 391
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.38 E-value=0.12 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999998876
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.28 E-value=0.078 Score=52.24 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.. .+++|+|+.|.|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998754
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.23 E-value=0.088 Score=48.86 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++++|+|+.|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998875
No 394
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.22 E-value=0.42 Score=52.98 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKK 171 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 171 (835)
.-.++.|.|.+|+||||||.+++... .. .+-..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a~-~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-GT-AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-TT-TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-HH-hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 34689999999999999999998887 22 1123577876644 455666655443
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.22 E-value=0.091 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 396
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.20 E-value=0.082 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.15 E-value=0.081 Score=51.60 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|.|++|+||||+|+.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 398
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.13 E-value=0.12 Score=53.32 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=29.9
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 113 EESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 113 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
....++|+|+|-||+||||+|..++.... .. .. .++-|....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La-~~-G~-~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS-IL-GK-RVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH-HT-TC-CEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH-HC-CC-eEEEEeCCC
Confidence 34678999999999999999999988872 22 22 456666543
No 399
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.10 E-value=0.28 Score=52.34 Aligned_cols=101 Identities=11% Similarity=0.176 Sum_probs=57.8
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCC--------CCCC-eEEEEEecCcc-CHHHHHHHHHHHhCCC
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESP--------TNFD-CVIWVVVSKDL-RLEKLQEDIGKKIGLV 175 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~ 175 (835)
.++.+.. ..-..++|.|..|+|||+|+.++++.. ... ++-+ .++++-+.+.. .+.++.+++...-...
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 4455543 334567899999999999999998876 221 1222 56666666554 5566776655421110
Q ss_pred C-----CCCCCCCHHHH-----HHHHHHHh---cCCcEEEEEcccC
Q 003265 176 G-----DSWKSRSAEEK-----ALDIFRSL---RGKRIVLLLDDIW 208 (835)
Q Consensus 176 ~-----~~~~~~~~~~~-----~~~l~~~l---~~k~~LlVlDdv~ 208 (835)
. ...+....... .-.+.+++ +++.+|+++||+-
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 00112222211 12233444 3789999999983
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.09 E-value=0.051 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 401
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.07 E-value=0.07 Score=52.87 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 402
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.00 E-value=0.08 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINN 138 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~ 138 (835)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456999999999999999999884
No 403
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.95 E-value=0.088 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999876
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.93 E-value=0.097 Score=53.56 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+++|+|+.|+||||+++.++...
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998876
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.88 E-value=0.11 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINN 138 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~ 138 (835)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 406
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.86 E-value=0.09 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999886
No 407
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.84 E-value=0.14 Score=54.88 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=58.7
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCC--CCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----C
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPT--NFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----S 178 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~ 178 (835)
.++.+.. ..-..++|.|.+|+|||+|+.+++... .... .=+.++++-+.+.. .+.++.+++...-.+... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 4555544 344567889999999999999999986 2211 11356677666654 566777777654211110 0
Q ss_pred CCCCCHHHH------HHHHHHHh---cCCcEEEEEccc
Q 003265 179 WKSRSAEEK------ALDIFRSL---RGKRIVLLLDDI 207 (835)
Q Consensus 179 ~~~~~~~~~------~~~l~~~l---~~k~~LlVlDdv 207 (835)
..+...... .-.+.+++ +++.+|+++||+
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 011222111 12233343 479999999997
No 408
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.83 E-value=0.6 Score=50.30 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=56.6
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHHHHHhCCCCC----CC
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLL-THINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDIGKKIGLVGD----SW 179 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~ 179 (835)
.++.+.. ..-..++|.|..|+|||+|| ..+.+.. ..-..++++-+.+.. .+.++.+.+...-.+... ..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4455544 34457889999999999996 5676653 222245778787764 466777776553211110 00
Q ss_pred CCCCHHHH------HHHHHHHh--cCCcEEEEEcccC
Q 003265 180 KSRSAEEK------ALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 180 ~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
........ .-.+.+++ +++.+|+++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11121111 11222333 6899999999984
No 409
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.82 E-value=0.092 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 410
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.82 E-value=0.17 Score=51.97 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|+|+|+.|.|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445799999999999999999998875
No 411
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.82 E-value=0.076 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.82 E-value=0.092 Score=50.79 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.81 E-value=0.1 Score=51.18 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|.|.|+.|+||||+|+.++..+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999987
No 414
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.78 E-value=0.097 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999886
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.76 E-value=0.1 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINN 138 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~ 138 (835)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.70 E-value=0.068 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=16.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH-hhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHIN-NKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~-~~~ 140 (835)
...+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 654
No 417
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.70 E-value=0.09 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 418
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.68 E-value=0.098 Score=49.49 Aligned_cols=25 Identities=32% Similarity=0.390 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 419
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.68 E-value=0.25 Score=51.28 Aligned_cols=47 Identities=26% Similarity=0.232 Sum_probs=33.8
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 111 LVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 111 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
+.+...+++.+.|.||+||||+|..++... . ..-..++-|......+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~l-a--~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQL-A--KVRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHH-T--TSSSCEEEEECCSSCH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHH-H--hCCCcEEEEECCCCCC
Confidence 344557889999999999999999999887 2 2223466666654433
No 420
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.67 E-value=0.1 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998876
No 421
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.66 E-value=0.26 Score=53.96 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 100 LQSQLEQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 100 r~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+.++.+...+.+.. +.+.|.|.+|+||||++..+....
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444455555555443 489999999999999999998887
No 422
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.54 E-value=0.42 Score=51.74 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=58.1
Q ss_pred HHHHhhc-CCceEEEEEcCCCCcHHHHH-HHHHhhcccC----CCCCC-eEEEEEecCcc-CHHHHHHHHHHHhCCCCC-
Q 003265 107 VWTCLVE-ESAGIIGLYGMGGVGKTTLL-THINNKFLES----PTNFD-CVIWVVVSKDL-RLEKLQEDIGKKIGLVGD- 177 (835)
Q Consensus 107 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~- 177 (835)
.++.+.. ..-..++|+|..|+|||+|| ..+.+.. .. ..+-+ .++++-+.+.. .+.++.+.+...-.+...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 4555554 44567889999999999994 5777765 21 12234 46777777654 466777776653211100
Q ss_pred ---CCCCCCHHHH------HHHHHHHh--cCCcEEEEEcccC
Q 003265 178 ---SWKSRSAEEK------ALDIFRSL--RGKRIVLLLDDIW 208 (835)
Q Consensus 178 ---~~~~~~~~~~------~~~l~~~l--~~k~~LlVlDdv~ 208 (835)
.......... .-.+.+++ +++.+|+++||+.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0011121111 11233333 5799999999984
No 423
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.50 E-value=0.1 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999876
No 424
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.49 E-value=0.68 Score=50.28 Aligned_cols=52 Identities=12% Similarity=-0.049 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
...++.|.|.+|+||||+|..++... ... .-..++|++... +..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~-a~~-~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA-ALK-EGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HHT-TCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHh-CCCeEEEEECCC--CHHHHHHHHHH
Confidence 44689999999999999999998876 221 123577776643 44566665544
No 425
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.48 E-value=0.21 Score=52.07 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=33.4
Q ss_pred hhcCCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC
Q 003265 111 LVEESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 160 (835)
Q Consensus 111 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 160 (835)
+.+...+++.+.|.||+||||+|..++... .....-..++-|......+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCC
Confidence 344567899999999999999999998877 2002223455666554433
No 426
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.46 E-value=0.074 Score=51.08 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
-.+++|+|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998765
No 427
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.46 E-value=0.12 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999988753
No 428
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.46 E-value=0.2 Score=48.97 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999988
No 429
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.44 E-value=0.38 Score=61.10 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW---KSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 191 (835)
.-+++.|.|++|+||||||.+++... .. .-..++|++.....+.. .++.++...+.. +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~-a~--~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-QR--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-HT--TTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 45799999999999999999998887 22 22368899887766643 255565432211 234556666666
Q ss_pred HHHh-cCCcEEEEEcccC
Q 003265 192 FRSL-RGKRIVLLLDDIW 208 (835)
Q Consensus 192 ~~~l-~~k~~LlVlDdv~ 208 (835)
.... +.+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5544 3566799999984
No 430
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.39 E-value=0.1 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999997764
No 431
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.32 E-value=0.31 Score=61.08 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDS---WKSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 191 (835)
.-.++.|.|++|+||||||.+++... .. .-..++|++.....+.. .++.++...+. .+..+.++....+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~a-a~--~g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l 802 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAA-QR--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 802 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHH-HH--cCCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHH
Confidence 45699999999999999999998876 22 22357888776665432 15555532111 0233556666666
Q ss_pred HHHh-cCCcEEEEEcccCC
Q 003265 192 FRSL-RGKRIVLLLDDIWE 209 (835)
Q Consensus 192 ~~~l-~~k~~LlVlDdv~~ 209 (835)
.+.. +.+.-+||+|.+..
T Consensus 803 ~~lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 803 DALARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHccCCCEEEEechhh
Confidence 6544 35667999999853
No 432
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.24 E-value=0.24 Score=50.67 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
..-.+++|.|++|+|||||++.++... .... -..++|+.... ...++...+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW-GTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH-HHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH-HHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 345699999999999999999998876 2211 11466665433 33344444433
No 433
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.21 E-value=0.11 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
.-.+++|+|+.|.|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.18 E-value=0.11 Score=52.06 Aligned_cols=27 Identities=33% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345699999999999999999997754
No 435
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.13 E-value=0.12 Score=47.51 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
..|+|+|.+|+|||||++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 436
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.13 E-value=0.096 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999987654
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.07 E-value=0.1 Score=51.50 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999997754
No 438
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.06 E-value=0.14 Score=50.56 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecC
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 157 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 157 (835)
.-.++.|.|++|+||||||.+++.... ..-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 446899999999999999988876651 1123577777554
No 439
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.06 E-value=0.81 Score=49.86 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=42.2
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccC-HHHHHHHH
Q 003265 106 QVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR-LEKLQEDI 168 (835)
Q Consensus 106 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 168 (835)
+.++.+.. ..-..++|.|..|+|||+|+.++++.. +-+.++++-+.+... +.++++++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 35566654 455689999999999999999998764 225788888887654 55666664
No 440
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.06 E-value=0.13 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...++.+.|.||+||||++..++...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999999876
No 441
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.03 E-value=0.13 Score=49.06 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-.|+|+|..|+|||||++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 442
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.03 E-value=0.13 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+++|+|+.|+||||+++.++...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4699999999999999999998876
No 443
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.02 E-value=0.13 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.02 E-value=0.087 Score=50.82 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997754
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.99 E-value=0.11 Score=51.77 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 355799999999999999999987654
No 446
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.97 E-value=0.13 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
..-.+++|+|+.|.|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35569999999999999999999884
No 447
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.94 E-value=0.11 Score=50.94 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 448
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.94 E-value=0.1 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999997654
No 449
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.93 E-value=0.47 Score=51.41 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=34.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGK 170 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 170 (835)
...++.|.|.+|+||||+|.+++... ... -..++|++... +..++...++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~-a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNM-SDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHH-HHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHH-HHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 44689999999999999999998876 222 23577776543 33344444443
No 450
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.88 E-value=0.11 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999998765
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.82 E-value=0.095 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 003265 118 IIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
No 452
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.81 E-value=0.13 Score=50.91 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345799999999999999999987653
No 453
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.80 E-value=0.25 Score=46.57 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999988764
No 454
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.79 E-value=1.1 Score=49.08 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=41.9
Q ss_pred HHHHHhhc-CCceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCcc-CHHHHHHHH
Q 003265 106 QVWTCLVE-ESAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKLQEDI 168 (835)
Q Consensus 106 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 168 (835)
+.++.|.. ..-..++|.|..|+|||+|+.++++.. +-+.++++-+.+.. .+.++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 35566654 455689999999999999999998875 22567888777653 455565554
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.78 E-value=0.11 Score=51.42 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997754
No 456
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.73 E-value=0.22 Score=49.69 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455799999999999999999988765
No 457
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.72 E-value=0.13 Score=51.26 Aligned_cols=27 Identities=44% Similarity=0.607 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345699999999999999999997654
No 458
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.57 E-value=0.14 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.56 E-value=0.12 Score=51.20 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 460
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.52 E-value=0.13 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345699999999999999999997754
No 461
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.50 E-value=0.14 Score=51.58 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355699999999999999999997654
No 462
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.47 E-value=0.46 Score=51.85 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDI 168 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 168 (835)
.-.++.|.|.+|+||||||..++... ... .-..++|++... +..++...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~-~~~-~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNV-ATK-TNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHH-HHH-SSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-HHh-CCCcEEEEECCC--CHHHHHHHH
Confidence 44689999999999999999998876 211 122577776543 334555444
No 463
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.47 E-value=0.16 Score=51.73 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999988654
No 464
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.46 E-value=0.15 Score=52.35 Aligned_cols=24 Identities=33% Similarity=0.284 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998853
No 465
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.38 E-value=0.15 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|+|+.|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.36 E-value=0.14 Score=47.99 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-+.|.|.|+.|+||||||..+..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678999999999999999998765
No 467
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.35 E-value=0.14 Score=51.31 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999987654
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.33 E-value=0.28 Score=51.64 Aligned_cols=27 Identities=22% Similarity=0.066 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999999865
No 469
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.32 E-value=0.33 Score=47.40 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEE
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWV 153 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 153 (835)
...|.|.|+.|+||||+++.+.... . ...+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeeee
Confidence 4689999999999999999999987 2 2345534433
No 470
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.31 E-value=0.13 Score=51.21 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 471
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.30 E-value=0.22 Score=53.12 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
....+++|+|+.|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34569999999999999999999884
No 472
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.25 E-value=0.27 Score=46.04 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=26.0
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 105 EQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 105 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
..+.+ +.......|.|+|.+|+|||||+..+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34445 34455567899999999999999998854
No 473
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.25 E-value=0.15 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-.|.|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999988754
No 474
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.24 E-value=0.16 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
..|+|+|.+|+|||||++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 475
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.24 E-value=0.44 Score=51.00 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=25.1
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 112 VEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 112 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
......+++|+|+.|.||||+++.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34556799999999999999999998876
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.23 E-value=0.13 Score=51.94 Aligned_cols=26 Identities=42% Similarity=0.539 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 477
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.19 E-value=0.17 Score=48.33 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHhhcCCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 105 EQVWTCLVEESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 105 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
+.+.+.......-.|.|+|.+|+|||||+..+.+..
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333333334445578899999999999999888654
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.19 E-value=0.19 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 479
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.18 E-value=0.15 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-.++.|+|++|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999988755
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.18 E-value=0.083 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 481
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.17 E-value=0.28 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-.|.+.|.||+||||+|..++...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 358899999999999999888886
No 482
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.98 E-value=0.16 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-.|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998764
No 483
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.96 E-value=0.4 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..|.|.|..|+||||+++.+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999987
No 484
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.94 E-value=0.16 Score=54.67 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 485
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.88 E-value=0.45 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 486
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.77 E-value=0.15 Score=47.01 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
--|.|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468899999999999999987653
No 487
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.76 E-value=0.32 Score=48.84 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEec
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS 156 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 156 (835)
++|+|.|-||+||||+|..++... ... .. .++-|...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l-a~~-G~-~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL-HAM-GK-TIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH-HTT-TC-CEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH-HHC-CC-cEEEEcCC
Confidence 578889999999999999999887 222 22 45556554
No 488
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.75 E-value=0.24 Score=46.28 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhh
Q 003265 114 ESAGIIGLYGMGGVGKTTLLTHINNK 139 (835)
Q Consensus 114 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 139 (835)
.....|.|+|.+|+|||||+..+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 489
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.72 E-value=0.18 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.-|.|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999988754
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.70 E-value=0.21 Score=49.21 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 116 AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 116 ~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
...|+|.|..|+||||+++.++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999987
No 491
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.69 E-value=0.17 Score=46.86 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..|+|+|.+|+|||||.+.+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 492
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.66 E-value=0.22 Score=46.12 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
....|.|+|.+|+|||||+..+....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999987653
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.65 E-value=0.2 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999886
No 494
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.61 E-value=0.11 Score=58.90 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHhhcCCce-----------EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 96 KVVGLQSQLEQVWTCLVEESAG-----------IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 96 ~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
.++|.+..+..+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 5788887766665555443211 58899999999999999998765
No 495
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.50 E-value=0.2 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-|.|+|.+|+|||||+..+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999987653
No 496
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.50 E-value=0.19 Score=47.10 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
--|.|+|.+|+|||||+..+....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988764
No 497
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.49 E-value=0.19 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhc
Q 003265 118 IIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 118 vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-|+|+|.+|+|||||+..+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999988753
No 498
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.48 E-value=0.37 Score=47.72 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHHHhhcC-C-ceEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 105 EQVWTCLVEE-S-AGIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 105 ~~l~~~L~~~-~-~~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
..+..++... . ...|.++|++|.|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455666543 2 4579999999999999999999864
No 499
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.47 E-value=0.19 Score=46.13 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhc
Q 003265 117 GIIGLYGMGGVGKTTLLTHINNKF 140 (835)
Q Consensus 117 ~vi~I~G~gGiGKTtLa~~v~~~~ 140 (835)
-.|.|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999988653
No 500
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.46 E-value=0.5 Score=59.20 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=60.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhhcccCCCCCCeEEEEEecCccCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 003265 115 SAGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKLQEDIGKKIGLVGDSW---KSRSAEEKALDI 191 (835)
Q Consensus 115 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 191 (835)
.-++|-|+|+.|+||||||.++.... +..=...+|+.+.+..+..- ++.++...++. .....++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45799999999999999999988765 33446688998877766543 66776543321 233446666666
Q ss_pred HHHh-cCCcEEEEEccc
Q 003265 192 FRSL-RGKRIVLLLDDI 207 (835)
Q Consensus 192 ~~~l-~~k~~LlVlDdv 207 (835)
.+.+ ++..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 6666 456679999998
Done!