Query 003266
Match_columns 835
No_of_seqs 161 out of 192
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 20:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003266.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003266hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10191 COG7: Golgi complex c 100.0 2E-142 5E-147 1280.4 86.3 740 4-831 1-766 (766)
2 KOG4182 Uncharacterized conser 100.0 1E-140 3E-145 1123.0 70.0 810 3-813 1-825 (828)
3 KOG2180 Late Golgi protein sor 100.0 3.3E-32 7.2E-37 305.9 54.4 655 8-833 14-722 (793)
4 PF04100 Vps53_N: Vps53-like, 100.0 8.1E-29 1.7E-33 276.7 34.4 352 11-426 2-379 (383)
5 PF07393 Sec10: Exocyst comple 99.9 2.1E-20 4.6E-25 226.5 58.6 575 102-830 24-699 (710)
6 KOG3745 Exocyst subunit - Sec1 99.7 1.7E-10 3.6E-15 133.9 63.1 648 7-830 17-746 (763)
7 KOG2307 Low density lipoprotei 99.3 2E-06 4.2E-11 96.6 52.4 610 3-805 23-699 (705)
8 PF10475 DUF2450: Protein of u 98.7 1.5E-05 3.3E-10 87.0 29.8 229 8-240 8-241 (291)
9 KOG0412 Golgi transport comple 98.4 0.011 2.3E-07 69.4 56.9 183 102-301 102-294 (773)
10 PF04437 RINT1_TIP1: RINT-1 / 98.1 0.01 2.3E-07 69.8 35.2 352 362-807 93-453 (494)
11 PF10392 COG5: Golgi transport 98.1 0.00011 2.4E-09 70.7 14.7 127 6-136 1-131 (132)
12 KOG2211 Predicted Golgi transp 97.7 0.2 4.3E-06 58.8 52.0 217 5-232 50-277 (797)
13 PF04091 Sec15: Exocyst comple 97.7 0.0048 1E-07 68.0 21.4 243 449-809 31-288 (311)
14 KOG4182 Uncharacterized conser 97.5 0.32 6.8E-06 54.9 43.0 150 639-802 624-799 (828)
15 PF06248 Zw10: Centromere/kine 97.5 0.5 1.1E-05 57.0 41.6 160 31-196 11-179 (593)
16 PF06046 Sec6: Exocyst complex 97.3 0.038 8.2E-07 66.1 24.0 306 404-831 203-530 (566)
17 PF08700 Vps51: Vps51/Vps67; 96.6 0.03 6.5E-07 49.6 11.3 85 8-97 1-85 (87)
18 KOG2176 Exocyst complex, subun 96.6 2.8 6E-05 50.8 44.5 149 10-158 9-168 (800)
19 KOG2115 Vacuolar sorting prote 96.5 0.8 1.7E-05 55.7 25.6 201 37-237 242-457 (951)
20 PF08318 COG4: COG4 transport 96.4 1.1 2.3E-05 50.1 24.7 110 176-302 1-110 (331)
21 PF06419 COG6: Conserved oligo 96.4 3.7 8E-05 49.8 41.3 263 49-330 24-325 (618)
22 smart00762 Cog4 COG4 transport 96.2 1.3 2.8E-05 49.4 23.7 110 176-302 1-110 (324)
23 PF06148 COG2: COG (conserved 95.9 0.0057 1.2E-07 58.9 3.1 104 3-114 3-113 (133)
24 KOG2346 Uncharacterized conser 93.6 0.48 1E-05 53.9 10.7 200 2-215 22-228 (636)
25 PF15469 Sec5: Exocyst complex 93.0 11 0.00024 38.1 18.9 119 102-222 58-177 (182)
26 PF04124 Dor1: Dor1-like famil 91.7 26 0.00056 39.2 28.2 143 72-227 55-202 (338)
27 KOG0994 Extracellular matrix g 91.3 16 0.00034 46.1 19.9 106 35-140 1512-1631(1758)
28 PF14923 CCDC142: Coiled-coil 87.7 13 0.00029 42.9 15.1 112 647-788 235-355 (450)
29 KOG2148 Exocyst protein Sec3 [ 87.1 77 0.0017 38.1 21.7 131 55-197 217-364 (867)
30 PF10474 DUF2451: Protein of u 87.0 18 0.00039 38.4 14.9 149 648-812 46-201 (234)
31 KOG3691 Exocyst complex subuni 86.6 34 0.00075 42.2 18.1 80 119-198 131-211 (982)
32 KOG0994 Extracellular matrix g 83.1 73 0.0016 40.6 18.8 36 104-142 1643-1678(1758)
33 KOG2344 Exocyst component prot 82.3 86 0.0019 38.2 19.4 217 201-501 193-411 (623)
34 PF04048 Sec8_exocyst: Sec8 ex 82.1 50 0.0011 32.2 14.4 25 135-159 107-132 (142)
35 COG3883 Uncharacterized protei 82.0 79 0.0017 34.1 18.0 84 70-161 59-144 (265)
36 PRK11637 AmiB activator; Provi 81.4 99 0.0021 35.8 19.1 16 136-151 141-156 (428)
37 cd00176 SPEC Spectrin repeats, 79.6 70 0.0015 31.9 17.0 19 222-240 182-200 (213)
38 KOG2180 Late Golgi protein sor 79.2 1.6E+02 0.0035 35.9 20.9 203 33-238 39-282 (793)
39 KOG0976 Rho/Rac1-interacting s 78.3 1.1E+02 0.0024 37.6 17.7 130 51-183 265-402 (1265)
40 PF11932 DUF3450: Protein of u 78.0 1E+02 0.0022 32.9 17.4 20 164-183 120-140 (251)
41 PHA02562 46 endonuclease subun 77.5 49 0.0011 39.5 15.5 48 78-125 228-275 (562)
42 KOG3758 Uncharacterized conser 75.8 1.9E+02 0.004 34.8 41.0 261 49-329 53-357 (655)
43 KOG0964 Structural maintenance 74.6 1.1E+02 0.0024 38.5 16.7 68 58-125 701-768 (1200)
44 KOG4302 Microtubule-associated 74.4 2.2E+02 0.0047 34.9 20.9 91 145-242 153-267 (660)
45 PF06008 Laminin_I: Laminin Do 74.3 1.3E+02 0.0028 32.3 17.6 62 35-97 46-107 (264)
46 PF08317 Spc7: Spc7 kinetochor 74.2 1.5E+02 0.0033 33.0 19.0 51 41-91 78-129 (325)
47 PF07889 DUF1664: Protein of u 71.9 18 0.00038 34.7 7.7 22 49-70 54-75 (126)
48 TIGR02169 SMC_prok_A chromosom 71.6 3.2E+02 0.0069 35.6 24.0 40 146-185 953-997 (1164)
49 cd07667 BAR_SNX30 The Bin/Amph 69.4 1.6E+02 0.0035 31.4 23.1 61 107-186 120-186 (240)
50 PHA03247 large tegument protei 69.2 3.6E+02 0.0077 38.1 20.6 124 103-228 1699-1853(3151)
51 PRK09039 hypothetical protein; 69.0 74 0.0016 35.8 13.3 50 69-121 136-185 (343)
52 PF04100 Vps53_N: Vps53-like, 68.8 2.2E+02 0.0047 32.6 22.2 128 32-160 23-173 (383)
53 PF14966 DNA_repr_REX1B: DNA r 68.3 73 0.0016 29.1 10.6 82 44-125 12-97 (97)
54 TIGR02338 gimC_beta prefoldin, 67.7 64 0.0014 29.9 10.5 88 102-189 21-110 (110)
55 PF01465 GRIP: GRIP domain; I 67.6 8.3 0.00018 30.1 3.8 39 771-809 2-45 (46)
56 PRK04778 septation ring format 67.2 2.1E+02 0.0046 34.5 17.5 36 59-94 306-341 (569)
57 smart00755 Grip golgin-97, Ran 66.9 10 0.00022 29.7 4.1 39 772-810 2-44 (46)
58 PF05667 DUF812: Protein of un 65.5 2.9E+02 0.0063 33.5 17.9 15 226-240 502-516 (594)
59 PF07464 ApoLp-III: Apolipopho 64.6 56 0.0012 32.4 9.8 80 44-126 2-81 (155)
60 COG1842 PspA Phage shock prote 64.1 2E+02 0.0043 30.4 17.9 78 106-185 107-184 (225)
61 PF04048 Sec8_exocyst: Sec8 ex 62.2 91 0.002 30.3 10.8 124 9-138 17-140 (142)
62 PF03915 AIP3: Actin interacti 61.6 42 0.00091 38.8 9.5 50 77-126 151-213 (424)
63 PF11932 DUF3450: Protein of u 61.4 2.3E+02 0.0049 30.2 15.1 21 164-184 143-163 (251)
64 KOG0964 Structural maintenance 61.2 1.2E+02 0.0027 38.1 13.6 91 34-126 658-748 (1200)
65 PF00261 Tropomyosin: Tropomyo 60.8 1.6E+02 0.0036 31.1 13.4 57 69-125 28-84 (237)
66 TIGR00237 xseA exodeoxyribonuc 59.8 3.3E+02 0.0072 31.6 17.3 47 10-56 229-277 (432)
67 PF06160 EzrA: Septation ring 59.7 1.7E+02 0.0038 35.2 14.8 100 68-169 99-216 (560)
68 KOG2211 Predicted Golgi transp 59.7 4E+02 0.0087 32.5 19.8 52 144-201 205-258 (797)
69 KOG1029 Endocytic adaptor prot 59.5 3.6E+02 0.0079 33.3 16.6 20 106-125 484-503 (1118)
70 PF10146 zf-C4H2: Zinc finger- 59.3 2.2E+02 0.0047 30.3 13.7 70 63-141 32-101 (230)
71 PF10475 DUF2450: Protein of u 58.0 2.8E+02 0.0062 30.2 19.4 65 62-126 20-85 (291)
72 PRK00286 xseA exodeoxyribonucl 58.0 3.5E+02 0.0076 31.3 18.5 47 11-57 235-283 (438)
73 PF05278 PEARLI-4: Arabidopsis 57.4 2.6E+02 0.0057 30.2 13.9 90 37-126 125-218 (269)
74 COG1196 Smc Chromosome segrega 57.1 5.9E+02 0.013 33.7 22.2 39 148-186 946-989 (1163)
75 PF12022 DUF3510: Domain of un 57.0 44 0.00096 31.8 7.5 66 671-756 14-79 (125)
76 PF03081 Exo70: Exo70 exocyst 56.8 3E+02 0.0065 30.9 15.6 29 274-302 3-31 (371)
77 KOG4514 Uncharacterized conser 55.9 1.5E+02 0.0033 29.9 10.9 21 144-164 199-219 (222)
78 PF04912 Dynamitin: Dynamitin 54.9 86 0.0019 35.8 10.8 28 99-126 313-340 (388)
79 PF15294 Leu_zip: Leucine zipp 54.6 93 0.002 33.8 10.1 70 68-137 130-199 (278)
80 KOG1937 Uncharacterized conser 54.4 4E+02 0.0087 30.9 17.1 18 34-51 345-362 (521)
81 PHA03332 membrane glycoprotein 52.6 4.4E+02 0.0096 33.8 16.2 91 2-98 829-919 (1328)
82 PF07889 DUF1664: Protein of u 51.8 2.3E+02 0.0049 27.2 11.4 18 76-93 88-105 (126)
83 PF10498 IFT57: Intra-flagella 51.7 4.1E+02 0.0089 30.2 15.8 97 82-186 246-347 (359)
84 TIGR00606 rad50 rad50. This fa 51.5 5E+02 0.011 34.8 18.4 42 144-185 822-868 (1311)
85 TIGR02168 SMC_prok_B chromosom 51.3 6.7E+02 0.015 32.6 23.0 21 145-165 966-986 (1179)
86 COG1579 Zn-ribbon protein, pos 50.3 3.5E+02 0.0075 28.9 16.3 16 170-185 120-135 (239)
87 PF02203 TarH: Tar ligand bind 50.1 2.3E+02 0.005 27.6 11.8 98 101-204 45-146 (171)
88 PRK03918 chromosome segregatio 49.5 6.5E+02 0.014 31.9 19.9 8 231-238 749-756 (880)
89 KOG0996 Structural maintenance 49.5 4.4E+02 0.0096 34.2 15.9 172 30-212 489-663 (1293)
90 cd00632 Prefoldin_beta Prefold 48.5 2.2E+02 0.0047 26.1 10.5 85 102-186 17-103 (105)
91 PRK09039 hypothetical protein; 48.5 4.4E+02 0.0096 29.6 20.1 19 170-188 168-186 (343)
92 COG1196 Smc Chromosome segrega 48.1 6.9E+02 0.015 33.0 18.7 42 59-100 705-746 (1163)
93 PF12718 Tropomyosin_1: Tropom 47.7 2.8E+02 0.0061 27.1 12.9 19 109-127 88-106 (143)
94 TIGR00634 recN DNA repair prot 47.6 3.6E+02 0.0078 32.4 15.0 69 117-186 214-285 (563)
95 PF13747 DUF4164: Domain of un 47.1 2.1E+02 0.0046 25.6 10.7 50 66-125 35-84 (89)
96 PF10157 DUF2365: Uncharacteri 46.6 3E+02 0.0065 27.2 12.0 18 146-163 128-145 (149)
97 PF08317 Spc7: Spc7 kinetochor 46.5 2E+02 0.0043 32.1 11.7 50 72-121 211-260 (325)
98 PRK04778 septation ring format 46.4 6.1E+02 0.013 30.6 18.5 39 287-327 519-559 (569)
99 KOG4559 Uncharacterized conser 45.7 2.4E+02 0.0052 25.8 10.6 87 33-125 24-116 (120)
100 PF10158 LOH1CR12: Tumour supp 44.9 3E+02 0.0064 26.6 13.1 92 34-142 27-118 (131)
101 TIGR02168 SMC_prok_B chromosom 44.7 8.3E+02 0.018 31.7 19.0 7 625-631 1130-1136(1179)
102 PF11101 DUF2884: Protein of u 44.3 3E+02 0.0064 29.1 12.0 54 72-125 169-223 (229)
103 KOG0933 Structural maintenance 43.7 8.3E+02 0.018 31.4 16.9 19 222-240 881-899 (1174)
104 PLN03217 transcription factor 43.0 1.1E+02 0.0023 27.2 6.7 60 33-92 19-78 (93)
105 PF10498 IFT57: Intra-flagella 42.9 1.2E+02 0.0025 34.5 9.1 13 10-22 188-200 (359)
106 PF06160 EzrA: Septation ring 42.6 6.8E+02 0.015 30.2 17.2 16 72-87 280-295 (560)
107 PRK03918 chromosome segregatio 42.0 8.2E+02 0.018 30.9 20.0 49 72-120 195-243 (880)
108 TIGR00606 rad50 rad50. This fa 42.0 1E+03 0.022 32.0 24.2 110 76-185 976-1093(1311)
109 PF04156 IncA: IncA protein; 41.9 3.8E+02 0.0082 27.0 13.8 10 132-141 141-150 (191)
110 PF06005 DUF904: Protein of un 41.8 2E+02 0.0044 24.8 8.3 49 49-97 4-52 (72)
111 PF03148 Tektin: Tektin family 41.8 5.8E+02 0.013 29.1 16.4 22 170-191 344-365 (384)
112 PF04880 NUDE_C: NUDE protein, 41.8 38 0.00083 34.0 4.5 53 36-94 2-54 (166)
113 PLN03094 Substrate binding sub 40.6 3.3E+02 0.0071 31.1 12.2 16 36-51 229-244 (370)
114 PF05667 DUF812: Protein of un 40.6 7.6E+02 0.016 30.1 18.7 120 101-240 440-568 (594)
115 TIGR02680 conserved hypothetic 39.4 1.1E+03 0.024 31.7 22.1 15 14-28 205-219 (1353)
116 smart00787 Spc7 Spc7 kinetocho 39.3 4.4E+02 0.0096 29.3 12.8 29 56-84 165-193 (312)
117 KOG2991 Splicing regulator [RN 38.7 1.1E+02 0.0023 32.7 7.3 65 33-98 235-299 (330)
118 PF05957 DUF883: Bacterial pro 38.6 2.8E+02 0.006 24.8 9.3 41 108-150 38-78 (94)
119 PF10191 COG7: Golgi complex c 38.6 9E+02 0.02 30.4 26.7 129 35-163 42-186 (766)
120 TIGR03185 DNA_S_dndD DNA sulfu 38.2 6.3E+02 0.014 31.0 15.3 24 174-197 498-521 (650)
121 TIGR00996 Mtu_fam_mce virulenc 37.9 4.7E+02 0.01 28.2 12.9 31 130-160 239-271 (291)
122 cd07628 BAR_Atg24p The Bin/Amp 37.6 4.5E+02 0.0099 26.7 18.0 12 278-289 170-181 (185)
123 PF11559 ADIP: Afadin- and alp 37.3 4E+02 0.0086 25.9 12.3 83 15-98 3-94 (151)
124 PRK04863 mukB cell division pr 37.3 1.2E+03 0.027 31.6 19.0 15 774-788 1417-1431(1486)
125 PF07851 TMPIT: TMPIT-like pro 37.0 2.8E+02 0.006 31.1 10.6 57 68-127 2-58 (330)
126 COG1579 Zn-ribbon protein, pos 36.9 5.5E+02 0.012 27.4 19.5 7 279-285 211-217 (239)
127 PF11559 ADIP: Afadin- and alp 36.7 4.1E+02 0.0088 25.8 16.5 65 35-100 39-103 (151)
128 PF10267 Tmemb_cc2: Predicted 36.7 4.1E+02 0.0089 30.6 12.2 63 132-195 262-326 (395)
129 PF06103 DUF948: Bacterial pro 36.6 3E+02 0.0065 24.3 10.1 21 37-57 18-38 (90)
130 PF05791 Bacillus_HBL: Bacillu 35.7 4E+02 0.0087 27.1 11.0 46 107-158 130-177 (184)
131 TIGR03185 DNA_S_dndD DNA sulfu 35.6 9.1E+02 0.02 29.6 19.8 23 173-195 489-511 (650)
132 PLN02939 transferase, transfer 35.6 1.1E+03 0.024 30.5 24.6 151 32-191 168-348 (977)
133 PRK02224 chromosome segregatio 35.5 1E+03 0.022 30.1 19.8 11 14-24 113-123 (880)
134 PRK03947 prefoldin subunit alp 35.4 3.2E+02 0.0069 26.2 9.9 15 171-185 119-133 (140)
135 PF10266 Strumpellin: Heredita 34.8 1.2E+03 0.025 30.6 17.0 157 72-237 414-604 (1081)
136 COG3264 Small-conductance mech 34.6 1E+03 0.023 30.0 18.9 51 75-125 63-113 (835)
137 PF04740 LXG: LXG domain of WX 34.1 5.2E+02 0.011 26.3 13.3 25 35-60 58-82 (204)
138 PF09177 Syntaxin-6_N: Syntaxi 34.1 3.5E+02 0.0076 24.3 9.8 63 106-186 33-96 (97)
139 PF01865 PhoU_div: Protein of 33.1 5.5E+02 0.012 26.3 17.9 146 64-215 41-196 (214)
140 PF08385 DHC_N1: Dynein heavy 32.9 9E+02 0.02 28.7 32.9 153 35-191 4-166 (579)
141 PRK10807 paraquat-inducible pr 32.8 4.7E+02 0.01 31.5 12.5 38 147-184 476-514 (547)
142 COG1329 Transcriptional regula 32.8 2E+02 0.0044 28.8 7.8 67 116-187 68-141 (166)
143 COG3937 Uncharacterized conser 32.5 2.3E+02 0.0049 26.4 7.5 59 34-93 46-106 (108)
144 PRK09343 prefoldin subunit bet 32.5 4.4E+02 0.0095 24.9 12.3 54 102-155 25-78 (121)
145 PF06825 HSBP1: Heat shock fac 32.0 1.1E+02 0.0024 24.8 4.9 33 32-64 4-36 (54)
146 PF12252 SidE: Dot/Icm substra 31.5 5.6E+02 0.012 33.0 12.7 107 43-165 1030-1145(1439)
147 PRK00846 hypothetical protein; 31.5 2.1E+02 0.0045 25.1 6.8 51 32-90 11-61 (77)
148 PF10168 Nup88: Nuclear pore c 31.3 1.1E+03 0.024 29.3 17.2 15 146-160 648-662 (717)
149 PLN03229 acetyl-coenzyme A car 31.2 1.1E+03 0.024 29.3 17.1 53 136-196 661-713 (762)
150 PRK11637 AmiB activator; Provi 31.0 8.7E+02 0.019 28.0 19.6 30 69-98 81-110 (428)
151 PF15358 TSKS: Testis-specific 31.0 3E+02 0.0065 31.4 9.5 103 64-190 133-237 (558)
152 KOG0250 DNA repair protein RAD 30.8 1.3E+03 0.028 29.9 19.5 70 59-128 291-364 (1074)
153 PF03704 BTAD: Bacterial trans 30.2 4.7E+02 0.01 24.6 14.2 27 202-228 98-124 (146)
154 PF07439 DUF1515: Protein of u 30.0 4.6E+02 0.01 24.4 9.6 64 35-102 9-72 (112)
155 PF15456 Uds1: Up-regulated Du 30.0 5E+02 0.011 24.8 10.5 41 69-110 21-61 (124)
156 PF00038 Filament: Intermediat 29.9 7.6E+02 0.016 26.9 15.8 100 36-139 13-114 (312)
157 KOG2911 Uncharacterized conser 29.9 8.6E+02 0.019 28.2 13.1 31 39-69 241-274 (439)
158 smart00787 Spc7 Spc7 kinetocho 29.8 8.1E+02 0.018 27.2 15.6 83 43-126 75-158 (312)
159 PRK02224 chromosome segregatio 29.2 1.3E+03 0.028 29.3 24.1 32 132-163 631-665 (880)
160 PF13949 ALIX_LYPXL_bnd: ALIX 28.7 7.6E+02 0.017 26.6 21.3 47 150-198 140-186 (296)
161 COG2900 SlyX Uncharacterized p 28.7 2.7E+02 0.0058 24.0 6.8 50 31-91 5-57 (72)
162 KOG0161 Myosin class II heavy 28.7 1.2E+03 0.026 32.6 16.1 23 166-188 1760-1782(1930)
163 PF07888 CALCOCO1: Calcium bin 28.4 1.1E+03 0.024 28.3 18.4 15 171-185 287-301 (546)
164 PRK06008 flgL flagellar hook-a 28.1 6.4E+02 0.014 28.2 12.1 103 71-186 18-121 (348)
165 COG1392 Phosphate transport re 28.0 7.2E+02 0.016 26.1 16.6 56 70-125 42-104 (217)
166 KOG3091 Nuclear pore complex, 27.9 1.1E+03 0.023 28.0 16.1 46 78-125 349-394 (508)
167 PRK10884 SH3 domain-containing 27.9 7.1E+02 0.015 25.9 12.1 25 34-58 89-113 (206)
168 PF05701 WEMBL: Weak chloropla 27.9 1.1E+03 0.024 28.1 17.4 119 64-186 296-419 (522)
169 PF04799 Fzo_mitofusin: fzo-li 27.7 3.8E+02 0.0083 27.1 8.9 60 34-97 105-164 (171)
170 PF05377 FlaC_arch: Flagella a 27.6 1.9E+02 0.0041 23.7 5.4 33 61-93 5-37 (55)
171 KOG3091 Nuclear pore complex, 27.2 1E+03 0.022 28.1 13.3 17 12-28 309-325 (508)
172 PF04108 APG17: Autophagy prot 27.2 1E+03 0.022 27.5 19.9 96 34-129 192-304 (412)
173 PF11855 DUF3375: Protein of u 27.0 8.4E+02 0.018 28.8 13.2 27 65-91 139-165 (478)
174 PF13514 AAA_27: AAA domain 26.8 1.6E+03 0.034 29.6 23.3 40 148-187 914-953 (1111)
175 KOG0796 Spliceosome subunit [R 26.6 9.2E+02 0.02 26.8 15.3 55 72-126 117-174 (319)
176 PF12805 FUSC-like: FUSC-like 26.5 5.7E+02 0.012 27.7 11.1 53 135-187 196-256 (284)
177 PF07200 Mod_r: Modifier of ru 26.5 6E+02 0.013 24.6 10.2 81 40-125 29-109 (150)
178 PRK10803 tol-pal system protei 26.5 8.4E+02 0.018 26.3 15.6 21 137-157 150-170 (263)
179 PLN02372 violaxanthin de-epoxi 26.4 6.2E+02 0.013 29.2 11.1 10 19-28 352-361 (455)
180 cd07622 BAR_SNX4 The Bin/Amphi 26.3 7.4E+02 0.016 25.6 19.5 12 278-289 184-195 (201)
181 KOG0161 Myosin class II heavy 26.3 2E+03 0.043 30.6 18.4 23 35-57 1010-1032(1930)
182 PF05664 DUF810: Protein of un 26.2 1.3E+03 0.029 28.5 29.5 182 271-494 411-603 (677)
183 PF10805 DUF2730: Protein of u 26.2 2.1E+02 0.0047 26.4 6.5 34 60-94 56-89 (106)
184 PF14644 DUF4456: Domain of un 26.1 7.5E+02 0.016 25.6 13.2 107 30-140 25-160 (208)
185 PRK10803 tol-pal system protei 26.0 8.5E+02 0.018 26.2 12.4 23 69-91 67-89 (263)
186 PF11855 DUF3375: Protein of u 25.9 1.1E+03 0.025 27.7 18.5 66 34-99 122-200 (478)
187 PF07544 Med9: RNA polymerase 25.7 3E+02 0.0065 24.2 7.1 58 69-126 20-77 (83)
188 KOG2911 Uncharacterized conser 25.7 1.1E+03 0.024 27.4 14.1 82 55-144 232-313 (439)
189 PF00015 MCPsignal: Methyl-acc 25.5 6.9E+02 0.015 25.0 13.4 22 34-57 47-68 (213)
190 PHA02562 46 endonuclease subun 25.3 1.2E+03 0.026 27.7 22.3 15 146-160 332-346 (562)
191 smart00502 BBC B-Box C-termina 25.2 5.2E+02 0.011 23.4 14.4 11 135-145 96-106 (127)
192 cd07657 F-BAR_Fes_Fer The F-BA 24.9 8.5E+02 0.018 25.8 19.0 69 145-215 162-230 (237)
193 PF10392 COG5: Golgi transport 24.9 6.1E+02 0.013 24.2 13.7 56 69-124 71-126 (132)
194 PF07106 TBPIP: Tat binding pr 24.8 5.5E+02 0.012 25.5 9.8 58 32-91 77-137 (169)
195 PF04513 Baculo_PEP_C: Baculov 24.7 6.7E+02 0.014 24.6 9.8 42 36-77 18-59 (140)
196 smart00319 TarH Homologues of 24.6 5.5E+02 0.012 23.6 10.0 98 103-202 3-103 (135)
197 PF02969 TAF: TATA box binding 24.3 49 0.0011 28.0 1.7 29 748-777 8-36 (66)
198 PF11887 DUF3407: Protein of u 24.2 9.2E+02 0.02 26.0 15.3 29 132-160 105-135 (267)
199 PRK10807 paraquat-inducible pr 23.6 5.6E+02 0.012 30.8 11.0 26 115-140 480-505 (547)
200 PF02403 Seryl_tRNA_N: Seryl-t 23.6 5.6E+02 0.012 23.3 12.8 57 101-159 25-82 (108)
201 PF02601 Exonuc_VII_L: Exonucl 23.5 1E+03 0.022 26.2 15.7 16 171-186 258-273 (319)
202 TIGR02169 SMC_prok_A chromosom 23.5 1.7E+03 0.037 28.9 25.8 13 172-184 956-968 (1164)
203 PF11902 DUF3422: Protein of u 23.5 1.2E+03 0.026 27.1 14.5 90 122-215 241-349 (420)
204 PF12296 HsbA: Hydrophobic sur 23.3 5.9E+02 0.013 23.5 12.4 62 70-131 1-62 (124)
205 PF11172 DUF2959: Protein of u 23.3 8.5E+02 0.019 25.3 12.3 122 108-237 21-151 (201)
206 PF08580 KAR9: Yeast cortical 22.9 1.5E+03 0.033 28.1 15.4 130 40-192 6-148 (683)
207 COG5314 Conjugal transfer/entr 22.9 2.5E+02 0.0054 29.7 6.8 58 72-129 95-153 (252)
208 PF15011 CK2S: Casein Kinase 2 22.8 3.9E+02 0.0085 26.8 8.2 97 115-222 1-101 (168)
209 PRK15178 Vi polysaccharide exp 22.7 6.3E+02 0.014 29.5 10.7 29 67-95 276-304 (434)
210 KOG4603 TBP-1 interacting prot 22.6 8.1E+02 0.018 24.8 11.3 63 32-100 84-146 (201)
211 PF10805 DUF2730: Protein of u 22.5 4.4E+02 0.0095 24.3 7.8 37 62-98 48-86 (106)
212 PF00038 Filament: Intermediat 22.5 1E+03 0.022 25.9 12.4 29 69-97 215-243 (312)
213 KOG2391 Vacuolar sorting prote 22.5 1.1E+03 0.025 26.4 14.7 50 70-126 225-274 (365)
214 KOG0250 DNA repair protein RAD 22.4 1.8E+03 0.039 28.7 17.8 36 738-773 1021-1061(1074)
215 COG4477 EzrA Negative regulato 22.2 1.4E+03 0.03 27.3 14.1 121 67-187 101-242 (570)
216 PF10046 BLOC1_2: Biogenesis o 21.8 6.1E+02 0.013 23.0 9.6 56 69-131 34-89 (99)
217 KOG0612 Rho-associated, coiled 21.7 2E+03 0.042 28.9 17.3 19 165-183 582-600 (1317)
218 KOG4603 TBP-1 interacting prot 21.2 8.7E+02 0.019 24.6 10.6 58 70-127 79-145 (201)
219 PF12718 Tropomyosin_1: Tropom 21.1 7.8E+02 0.017 24.0 14.7 19 77-95 35-53 (143)
220 TIGR02132 phaR_Bmeg polyhydrox 20.9 6.4E+02 0.014 25.7 8.8 60 35-94 76-138 (189)
221 COG3096 MukB Uncharacterized p 20.8 1.1E+03 0.024 29.3 12.1 61 71-131 384-444 (1480)
222 PF12128 DUF3584: Protein of u 20.8 2.1E+03 0.045 28.8 20.7 81 134-215 922-1006(1201)
223 PF04156 IncA: IncA protein; 20.7 8.6E+02 0.019 24.4 12.1 32 69-100 108-139 (191)
224 PF09763 Sec3_C: Exocyst compl 20.7 1.6E+03 0.036 27.6 49.0 178 56-240 30-253 (701)
225 PF14712 Snapin_Pallidin: Snap 20.4 5.9E+02 0.013 22.4 8.4 22 106-127 62-83 (92)
226 TIGR02680 conserved hypothetic 20.4 2.2E+03 0.048 29.0 17.1 8 676-683 1312-1319(1353)
227 PF13779 DUF4175: Domain of un 20.3 1.6E+03 0.035 28.5 14.4 38 128-165 538-575 (820)
228 PF09059 TyeA: TyeA; InterPro 20.3 5.3E+02 0.012 23.1 7.5 60 129-189 19-83 (87)
229 KOG1029 Endocytic adaptor prot 20.2 1.8E+03 0.038 27.8 16.8 31 106-138 529-559 (1118)
230 PRK08913 flgL flagellar hook-a 20.1 1.1E+03 0.024 25.5 12.0 80 71-161 17-97 (301)
231 PF04102 SlyX: SlyX; InterPro 20.0 4.3E+02 0.0094 22.3 6.7 50 33-90 3-52 (69)
No 1
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=100.00 E-value=2.3e-142 Score=1280.40 Aligned_cols=740 Identities=45% Similarity=0.710 Sum_probs=660.2
Q ss_pred CCCCCCCCCCCHHHHHhhhcCCCCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q 003266 4 DLGPFSDEKFDPKKWINSACQTRHSQ---DSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAI 80 (835)
Q Consensus 4 dls~F~~~~FD~~~wIN~~~~~~~~~---~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~ 80 (835)
|+|.|++++||||.|||++|++.+++ +++|+|+++|++|||+++|++|.+||+.+.|+++++||+++|+++|++++.
T Consensus 1 d~s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~ 80 (766)
T PF10191_consen 1 DLSAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAA 80 (766)
T ss_pred ChhhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 89999999999999999999998775 346788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 003266 81 SLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCL 160 (835)
Q Consensus 81 ~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl 160 (835)
.|+++|..|++++++++.++..+|..|.+||+||+||++|+++|+||++|++++++|+++|++|||+.+|++|.+|++||
T Consensus 81 ~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL 160 (766)
T PF10191_consen 81 SLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSL 160 (766)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 161 SAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 161 ~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~~~ 240 (835)
.+|+++|||++|++++|+||||||++++|+|++||+++|+++|++|++||..|+|+++|++||++||+.++++.|+.++.
T Consensus 161 ~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~ 240 (766)
T PF10191_consen 161 AVLQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQ 240 (766)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCchhchHHHHHHHHHHhhhcc
Q 003266 241 RQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDYRTLVPKLLVETMASVGGS 320 (835)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~~~l~~~ll~~~~~~l~~s 320 (835)
.+++ .+|.+||++||+.++.+|++|++||++|||+++. ++..++++++.+|+|+
T Consensus 241 ~~~~-------------------------~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~-~~~~ll~~~L~~L~PS 294 (766)
T PF10191_consen 241 SDQS-------------------------QSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP-VLPKLLAETLSALQPS 294 (766)
T ss_pred hccc-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhcCcc
Confidence 5521 4799999999999999999999999999999998 5688999999999999
Q ss_pred HHHHHhhhhCCCCchhhhhhhhhhhhccCCCCccchhhhhhHHHHHHHHHHHHHHHHHhhhhhcc----chhHHHHHHHH
Q 003266 321 FVSRINLATGDFVPETKALSKGILDILSGDMPKGIKLQTKHLEALIDLHNMTGTFARNIQHLFSE----SDLQVLLDTLK 396 (835)
Q Consensus 321 i~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~~~~~t~~F~~~l~~~~~~----~~~~~~~~l~~ 396 (835)
|++||+.+++++.|+ -+|..|+++|++|.+|++++++.+.. .+..++.+|++
T Consensus 295 ~~~~l~~al~~~~~~------------------------~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~ 350 (766)
T PF10191_consen 295 FPSRLSSALKRAGPE------------------------TKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQ 350 (766)
T ss_pred HHHHHHHHHhhcCch------------------------hhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 999999987655431 14899999999999999999999876 56778889999
Q ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcchhHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCHH
Q 003266 397 AVYFPYDTFKQRYGQMERAILSSEIAGVDLRGAVTRGIGAQGIELSETVRRMEESIPQVIVLLEAAVERCISFTGGSEAD 476 (835)
Q Consensus 397 ~i~~PF~~~~~~Y~~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~l~~s~~~lf~~~~~Av~RC~~lT~g~~~~ 476 (835)
+||+||.+|+.+|+++|+++|...|+.++.. +.++.|+++.|.++++++|.++++||+||.+||+|+++|
T Consensus 351 al~~PF~~~q~~Yg~lE~~~L~~~L~~l~~~----------~~~~~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~ 420 (766)
T PF10191_consen 351 ALFEPFKPYQQRYGELERRFLSAQLSALDLE----------SAELSDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVP 420 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------CCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHH
Confidence 9999999999999999999999999999886 568899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHH
Q 003266 477 ELILALDDIMLQYISTLQELLKSLRAVCGVDHDGVGSKKEVGFDKKEGVSNARKADISSEEEWSIVQGALQILTVADCLT 556 (835)
Q Consensus 477 ~l~~al~~~l~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~edW~~~q~al~lL~~~~~l~ 556 (835)
+|+++++++|.+|++.|+.++++||+.|+.+.++.+ ..+.+||+.||++|++|++||++.
T Consensus 421 ~Ll~Ald~~~~~y~~~~~~~l~~lr~~~~~~~~~~~--------------------~~~~eDWs~fQ~aL~LL~~~g~l~ 480 (766)
T PF10191_consen 421 GLLKALDSIFSQYLSSLTATLRSLRKSCGLDSTATS--------------------SASSEDWSLFQNALQLLQTCGELL 480 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc--------------------ccccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998664421 013589999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCCchhhhccccccCCCCCcccccchhhhHHHHhhhcCHHHHHHHHHHHhhcCC
Q 003266 557 SRSSVFEASLRATLARLSTSLSLSVFGSSLDQKQSQSANVDGHGELSVGGRAALDVAAVRLIDVPEKARKLFNLLDQSKD 636 (835)
Q Consensus 557 ~~~~~~E~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~l~~ll~~~~~ 636 (835)
.++++||++++.+|+++.+++..+.|+++.+........+++.. ...+....++...++.+.+.....+....++ .+
T Consensus 481 ~rl~~fE~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~-~~ 557 (766)
T PF10191_consen 481 SRLSQFEQSLRSRLLELASKLLSSSFSSSSDTGEAASGDTRSSS--PNPWKGYNYLAASRLAELPNKAEDLQSLSEQ-AS 557 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCCccccccccccccCccc--ccchHHHHhhccccHHHHHHHHHHHHHhhhc-cC
Confidence 99999999999999999888865544454433211111111111 1111111111222222223233333333322 24
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccc--ccccccCCCCCCCCChhHHHHHHHHHHHhhh
Q 003266 637 PRFHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSS--VEEQSAFHLPTFSAYPQTYVTSVGEYLLTLP 714 (835)
Q Consensus 637 ~~~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~--~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LP 714 (835)
+.+++||.+++++++|++++|+++||++|+||+++|+.||++++|++ .++.++.+||+||++||||||+||||||+||
T Consensus 558 ~~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLP 637 (766)
T PF10191_consen 558 PSFSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLP 637 (766)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhH
Confidence 67899999999999999999999999999999999999999999998 5556678999999999999999999999999
Q ss_pred hhhhhhhccC--------------CCC---CCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHH
Q 003266 715 QQLEPLAEGI--------------STS---DNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYL 777 (835)
Q Consensus 715 q~LEp~~~~~--------------~~~---~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL 777 (835)
||||||++++ .++ ++.++.+.++++||++||++||++|+++|.+|+.||++||+||++||+||
T Consensus 638 q~LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl 717 (766)
T PF10191_consen 638 QQLEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPELSESGAKQLATDIDYL 717 (766)
T ss_pred HhhhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 9999999986 122 23456688999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCChhhHHHHHHHhCCCcHHHHHHhhhcCCCCCChhHHHHHHHHhc
Q 003266 778 SNVLSALSVPIPPALATFHTCLSTPRDQLKDLLKSDSGNQLDLPTANLVCKIRR 831 (835)
Q Consensus 778 ~NVl~aLg~~~~~~L~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~v~~mR~ 831 (835)
+|||+|||+++++.|++|++||++|||+|++++++ +|+|++++||+||+
T Consensus 718 ~nVl~aLg~~~~~~L~~~~~ll~~~~~~~~~~~~~-----~~~~~~~~v~~mr~ 766 (766)
T PF10191_consen 718 SNVLSALGLSPPPNLQQLVTLLKAPPDQYAQVAKG-----LPRRLVAAVAKMRN 766 (766)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCHHHHHHHHhc-----CCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999983 89999999999997
No 2
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-140 Score=1122.98 Aligned_cols=810 Identities=53% Similarity=0.789 Sum_probs=779.0
Q ss_pred CCCCCCCCCCCCHHHHHhhhcCCCCCC------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 003266 3 LDLGPFSDEKFDPKKWINSACQTRHSQ------DSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLR 76 (835)
Q Consensus 3 ~dls~F~~~~FD~~~wIN~~~~~~~~~------~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~ 76 (835)
||++.|++..||+++|||..|+..+++ +.+++||.++++|||+++.++++++|+.+.+++.++||+.+|+-++|
T Consensus 1 lDlg~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq 80 (828)
T KOG4182|consen 1 LDLGAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQ 80 (828)
T ss_pred CCCccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHH
Confidence 799999999999999999999986542 33789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHH
Q 003266 77 DDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANM 156 (835)
Q Consensus 77 ~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~ 156 (835)
.++-.|+++|..|+.++.+++..++++|..|.+||.+|+||++|+++|++|++|.+|.++|++.|.+||++.+|++|.+|
T Consensus 81 ~Da~~Lq~kma~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaal 160 (828)
T KOG4182|consen 81 ADAHRLQEKMAAILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAAL 160 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 003266 157 RHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWE 236 (835)
Q Consensus 157 ~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~ 236 (835)
++||.....+|+|++|++++|.|+||||++++|.+++||..+++|++++++.||.+|+|.+++..||.+++++++++.|+
T Consensus 161 qkcL~A~~elaefAe~qkQlE~~edRLEAlaqPrltda~a~~ktd~AQd~r~I~irIgRfkqLelqY~~Vq~k~ikQlWe 240 (828)
T KOG4182|consen 161 QKCLHAQEELAEFAERQKQLEDFEDRLEALAQPRLTDAFAEGKTDQAQDFRQIFIRIGRFKQLELQYRAVQKKFIKQLWE 240 (828)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCchHHHHHHccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCchhchHHHHHHHHHHh
Q 003266 237 EFESRQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDYRTLVPKLLVETMAS 316 (835)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~~~l~~~ll~~~~~~ 316 (835)
++.+..++++.++++++..+++.|+.|++++....|..||+.|||++|..+++|++||+..||++|..++..++.+++..
T Consensus 241 dfd~kQ~anklanersesqrlssgdEfQstssq~qfaq~LT~fYDeLL~~~eqe~KWCm~aF~ddym~l~~kliaE~lga 320 (828)
T KOG4182|consen 241 DFDEKQGANKLANERSESQRLSSGDEFQSTSSQPQFAQFLTLFYDELLEHCEQEVKWCMNAFGDDYMPLPFKLIAELLGA 320 (828)
T ss_pred HHHHhcchhhhhcchhhhhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHhh
Confidence 99999999999999999999999999999887789999999999999999999999999999999988889999999999
Q ss_pred hhccHHHHHhhhhCCCCchhhhhhhhhhhhccCCCCccchhhhhhHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Q 003266 317 VGGSFVSRINLATGDFVPETKALSKGILDILSGDMPKGIKLQTKHLEALIDLHNMTGTFARNIQHLFSESDLQVLLDTLK 396 (835)
Q Consensus 317 l~~si~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~~~~~t~~F~~~l~~~~~~~~~~~~~~l~~ 396 (835)
|.++|..||..++|+++|+++.+|++.++..+|++|||+.+.++||+.|++.|++|++|+++++++|.+.....+++.+.
T Consensus 321 Lgasf~a~i~la~gda~~e~eaLAk~a~dl~Sgdlpkgini~tkHLeaLiElh~iTgsfarniqhlfaEee~RiL~dtle 400 (828)
T KOG4182|consen 321 LGASFDAHILLALGDANEELEALAKFAKDLHSGDLPKGINIFTKHLEALIELHHITGSFARNIQHLFAEEEHRILGDTLE 400 (828)
T ss_pred hchhHHHHHHHHhccccHHHHHHHHHHHHhccCcCccchhHHHHHHHHHHHHhhcchhhhhhHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888889999
Q ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcchhHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCHH
Q 003266 397 AVYFPYDTFKQRYGQMERAILSSEIAGVDLRGAVTRGIGAQGIELSETVRRMEESIPQVIVLLEAAVERCISFTGGSEAD 476 (835)
Q Consensus 397 ~i~~PF~~~~~~Y~~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~l~~s~~~lf~~~~~Av~RC~~lT~g~~~~ 476 (835)
+||+||..|.++|+.+|+..|+.++..++++++++||+|+++.+++|.|++|++|++++..|+++|++||+.||+|...+
T Consensus 401 AifepFekF~QkYgklE~aiLSseia~ldlrgavtrgvgang~elSd~VR~lEESipklv~lLeaA~ERC~gfTg~~~a~ 480 (828)
T KOG4182|consen 401 AIFEPFEKFIQKYGKLEEAILSSEIARLDLRGAVTRGVGANGAELSDGVRHLEESIPKLVELLEAACERCAGFTGDLAAC 480 (828)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhhHHHHHHHHHHHHHhhcccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHH
Q 003266 477 ELILALDDIMLQYISTLQELLKSLRAVCGVDHDGVGSKKEVGFDKKEGVSNARKADISSEEEWSIVQGALQILTVADCLT 556 (835)
Q Consensus 477 ~l~~al~~~l~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~edW~~~q~al~lL~~~~~l~ 556 (835)
+|+.+++++|++|++.|.+++++|+-.||.+.++. ++.+++.++.+....+++.|+.++|+|+.+|+++++|+++.++.
T Consensus 481 eLIlaLddI~~q~iem~~e~lkqi~l~cG~dgt~~-gvgskkdasaekressrkmdltsnEeWSilQgalqiLq~a~c~q 559 (828)
T KOG4182|consen 481 ELILALDDIFKQQIEMFGEILKQIGLSCGSDGTAA-GVGSKKDASAEKRESSRKMDLTSNEEWSILQGALQILQCAACFQ 559 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhceeeccCcccc-cccccccchhhhhhhhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988773 34455667788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCCchhhhccccccCCCCCcccccchhhhHHHHhhhc----CHHHHHHHHHHHh
Q 003266 557 SRSSVFEASLRATLARLSTSLSLSVFGSSLDQKQSQSANVDGHGELSVGGRAALDVAAVRLID----VPEKARKLFNLLD 632 (835)
Q Consensus 557 ~~~~~~E~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~----~~~~~~~l~~ll~ 632 (835)
.++++||..|+..+.++...+++..||++.|+...+.++...+++....|++..|..+++..+ -|+.+++|.++++
T Consensus 560 sq~~~FEadL~atlaRln~~lni~lfgsNldh~l~~lk~d~aAgdl~lag~Admd~aai~~tDslgi~Pe~a~kL~n~~~ 639 (828)
T KOG4182|consen 560 SQLHQFEADLHATLARLNMLLNILLFGSNLDHILIFLKCDHAAGDLLLAGIADMDQAAIEATDSLGIFPEIAAKLKNHFA 639 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhhhhHHHhhhhhHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 999999999999999999888889999999988877788877888888999999999999887 7999999999999
Q ss_pred hcCCC--CCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHH
Q 003266 633 QSKDP--RFHALPLAS-QRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEY 709 (835)
Q Consensus 633 ~~~~~--~~~~l~~~~-~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~ 709 (835)
+++|+ +||.+|.++ .++.++..+.|.+++|++++.+++.+..++..++|....++...+||+||.|||.|++++|||
T Consensus 640 ds~D~tl~fhalPiash~~~aafadq~~~~~~d~liS~~~a~l~eisqi~iw~~teeQ~a~PL~nfSsyPqS~lkqagE~ 719 (828)
T KOG4182|consen 640 DSHDITLNFHALPIASHLAHAAFADQDHAASGDELISFSFAPLEEISQIGIWLLTEEQHAEPLLNFSSYPQSLLKQAGEV 719 (828)
T ss_pred hccCcchhhhhcchHhhhhhcCCccccchhhhhhhhhhhhcchhhHhhhhhHHhcchhhcccccccccccHHHHHHHHHH
Confidence 99999 899999987 899999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHhhhhhhhhhhccCCCC-C-CchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHHHHHHHHcCCC
Q 003266 710 LLTLPQQLEPLAEGISTS-D-NNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVLSALSVP 787 (835)
Q Consensus 710 Ll~LPq~LEp~~~~~~~~-~-~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL~NVl~aLg~~ 787 (835)
++.+|||+||+++.+++. + ++++++.|+++||.+|++++|.+|+++|++|..+++.||+||++||+||+|||++||++
T Consensus 720 ~l~~pqQ~eP~AdgistngdSnnedaqffatewmfkVaEga~aLYmdQi~gIk~i~dr~AqQLSVDIEYLSNVLeaL~lp 799 (828)
T KOG4182|consen 720 CLIKPQQAEPCADGISTNGDSNNEDAQFFATEWMFKVAEGACALYMDQILGIKSIPDRAAQQLSVDIEYLSNVLEALGLP 799 (828)
T ss_pred HhcchhhccchhhcccccccCcchhhhHHHHHHHHHHHHhHHHHHHHHHhcccccCchhhhhhhhhHHHHHHHHHHhCCC
Confidence 999999999999987643 3 36677999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhCCCcHHHHHHhhhc
Q 003266 788 IPPALATFHTCLSTPRDQLKDLLKSD 813 (835)
Q Consensus 788 ~~~~L~~~~~ll~~~~~~~~~~~~~~ 813 (835)
+++.|.++.+||+++|++|+.++++.
T Consensus 800 I~~~Laqf~TcLaa~~~elkdlmk~~ 825 (828)
T KOG4182|consen 800 INLQLAQFLTCLAAAPDELKDLMKGC 825 (828)
T ss_pred CChHHHHHHHHHhcCcHHHHHHhccc
Confidence 99999999999999999999999963
No 3
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-32 Score=305.94 Aligned_cols=655 Identities=16% Similarity=0.179 Sum_probs=465.3
Q ss_pred CCCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 003266 8 FSDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVS 87 (835)
Q Consensus 8 F~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~ 87 (835)
|-.++|..+++||..||..++ -..|.+++.|+|.-++++.+.|...+.+....+-+....+..++..+.+|..++.
T Consensus 14 ~~t~~f~~v~~in~lfp~eqS----L~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~ 89 (793)
T KOG2180|consen 14 IPTPEFNFVEYINELFPAEQS----LTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQ 89 (793)
T ss_pred cCCcchhHHHHHHHhccchhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 445789999999999999988 4588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc---c
Q 003266 88 GILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAV---G 164 (835)
Q Consensus 88 ~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l---~ 164 (835)
.|++..+..|.++.+++++|+.||.+|+|+++++++|++..++.+-..++..+...++|.++++.|.+|-+.+..| +
T Consensus 90 eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk 169 (793)
T KOG2180|consen 90 EIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYK 169 (793)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999986666666667777799999999999999999999755 8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCH-----------HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 003266 165 EVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKI-----------DIARDLRGILIRIGRFKSLELHYTKVHLKYIKQ 233 (835)
Q Consensus 165 ~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~-----------~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~ 233 (835)
++|++....+.|.++|..|-.++...|.++|..++. |+|+ ++++|..--| .++++|||..++..|..
T Consensus 170 ~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~-v~d~lepsvr-eelIkwf~~qqL~ey~~ 247 (793)
T KOG2180|consen 170 SVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACL-VVDALEPSVR-EELIKWFCSQQLEEYEQ 247 (793)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHH-HHHHhCCccH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877 7888 8999999999 89999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCchh---chHHHHH
Q 003266 234 LWEEFESRQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDYR---TLVPKLL 310 (835)
Q Consensus 234 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~~---~l~~~ll 310 (835)
++++..+ ++.+++ .++++ .||.++|...++ +|.+ +||.+|. .|+..|+
T Consensus 248 IF~en~E-------------~a~LDk--------idrRY-----~wfKr~L~~fe~--k~~~-iFP~dW~v~~RLt~eFc 298 (793)
T KOG2180|consen 248 IFRENEE-------------AASLDK--------LDRRY-----AWFKRLLRDFEE--KWKP-IFPADWHVAYRLTIEFC 298 (793)
T ss_pred HHhccHh-------------hhhhhh--------HHHHH-----HHHHHHHHHHHH--hccc-cCCcccchhHHHHHHHH
Confidence 9988543 446665 33444 467788888777 8975 9999995 3444455
Q ss_pred HHHHHhhhccHHHHHhhhhCCCCchhhhhhhhhhhhccCCCCccchhhhhhHHHHHHHHHHHHHHHHHhhhhhccc----
Q 003266 311 VETMASVGGSFVSRINLATGDFVPETKALSKGILDILSGDMPKGIKLQTKHLEALIDLHNMTGTFARNIQHLFSES---- 386 (835)
Q Consensus 311 ~~~~~~l~~si~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~~~~~t~~F~~~l~~~~~~~---- 386 (835)
..|...|...+..+-+ ...+..|+-+.+.|..|++-+...|++.
T Consensus 299 ~~Tr~~L~~Il~~~~~--------------------------------~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~ 346 (793)
T KOG2180|consen 299 HQTRKQLESILKRRKK--------------------------------EPDVKLLLFALQSTLEFEKFLDKRFSGGTLTG 346 (793)
T ss_pred HHHHHHHHHHHHHhhh--------------------------------CccHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 5454433332222111 1146777888999999999999888531
Q ss_pred ----hhH---H-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcchhHHHHHhhhhHHHHHHH
Q 003266 387 ----DLQ---V-LLDTLKAVYFPYDTFKQRYGQMERAILSSEIAGVDLRGAVTRGIGAQGIELSETVRRMEESIPQVIVL 458 (835)
Q Consensus 387 ----~~~---~-~~~l~~~i~~PF~~~~~~Y~~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~l~~s~~~lf~~ 458 (835)
+.. + ......+|...|.||.+-|++.|++.|.+.+..+....+.+- ......++-..+..|+.++|..
T Consensus 347 ~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~----~p~~~~~~~s~vlpSsadlF~~ 422 (793)
T KOG2180|consen 347 KPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDG----EPKSNTDEESLVLPSSADLFVA 422 (793)
T ss_pred CCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCC----CCCCCcccccccCccHHHHHHH
Confidence 111 0 112455666667777777999999999999998876533210 0011123334568899999999
Q ss_pred HHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCCCCCCccccccccccccccc--cccccC
Q 003266 459 LEAAVERCISFTGG-SEADELILALDDIMLQYISTLQEL-LKSLRAVCGVDHDGVGSKKEVGFDKKEGVSNA--RKADIS 534 (835)
Q Consensus 459 ~~~Av~RC~~lT~g-~~~~~l~~al~~~l~~y~~~~~~~-l~~lr~~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~ 534 (835)
++.-+..|.+|+.+ .++..+.. +|.+|+..|+.. +..+ ++.++. .+.|. .....- ...++-
T Consensus 423 Ykkcltq~~~Ls~n~dpl~~~~~----~f~k~LreYa~kil~~~-----lP~~t~--~s~g~----~v~~l~~~e~~~~~ 487 (793)
T KOG2180|consen 423 YKKCLTQCSELSENNDPLIALLA----VFSKWLREYAQKILLGN-----LPDTTS--SSDGA----AVYLLLRIEGAEYC 487 (793)
T ss_pred HHHHHHHHHHhccCCchHHHHHH----HHHHHHHHHHHHHhhcc-----CCcccc--cccCc----hhhhHHHhhhhhhh
Confidence 99999999999998 56666555 456666666643 2111 222221 01110 000000 001110
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccccccCCCchhhhccccccCCCCCcccccchhhhHH
Q 003266 535 SEEEWSIVQGALQILTVADCLTSRSSVFEASLRATLARLST-SLSLSVFGSSLDQKQSQSANVDGHGELSVGGRAALDVA 613 (835)
Q Consensus 535 ~~edW~~~q~al~lL~~~~~l~~~~~~~E~~l~~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 613 (835)
. ---..+-..|-++.++.+|.+...++|++|++....... .+++
T Consensus 488 ~-~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~~~vs~---------------------------------- 532 (793)
T KOG2180|consen 488 R-FTIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYIKGVSF---------------------------------- 532 (793)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch----------------------------------
Confidence 0 011367788999999999999999999998776542221 2221
Q ss_pred HHhhhcCHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCC
Q 003266 614 AVRLIDVPEKARKLFNLLDQSKDPRFHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLP 693 (835)
Q Consensus 614 ~~~l~~~~~~~~~l~~ll~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP 693 (835)
..+...++..+. ..+.-++.... -.+-| .|..|+.+ -|...++
T Consensus 533 -------s~~r~~~~~~~~--------------~s~q~lv~D~e-----~a~~~---~lt~msk~-~~~~l~~------- 575 (793)
T KOG2180|consen 533 -------SEEREVFSSKIS--------------VSLQFLVQDLE-----NALDP---DLTPMSKM-QWQNLEG------- 575 (793)
T ss_pred -------HHHHHHHHHHHh--------------hhHHHHHHHHH-----HhhCc---ccChHHHH-HHHHhcC-------
Confidence 112233333321 11222222222 22333 45556654 4766554
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhhh-hhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHh
Q 003266 694 TFSAYPQTYVTSVGEYLLTLPQQLEP-LAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSV 772 (835)
Q Consensus 694 ~fs~~P~eyIt~IGe~Ll~LPq~LEp-~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~ 772 (835)
....|+||+.+..|+-.--+.+-- ...+ -.+...++.+.|.+....|.+.+.+..+.+..||+||..
T Consensus 576 --vgDQss~v~s~~~h~~q~~~~i~~~~~~~----------r~~f~~fc~r~a~~f~~kf~~~l~R~k~~s~~g~EQLll 643 (793)
T KOG2180|consen 576 --VGDQSSYVSSLNFHLSQFVPLIRDALALD----------RKYFAQFCVRLAASFIPKFLNVLFRAKPISVVGAEQLLL 643 (793)
T ss_pred --ccccchhhHHHHHHHHhhhHHHHHHhccc----------cchHHHhhHHHHhhcchHHHHHHHHhhhHhhhHHHHHHH
Confidence 225678998888887655444332 2222 235788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCC-------Ch---------hhHHHHHHHhCCC---cHHHHHHhhhcCCCCCChhHHHHHHHHhcCC
Q 003266 773 DIEYLSNVLSALSVP-------IP---------PALATFHTCLSTP---RDQLKDLLKSDSGNQLDLPTANLVCKIRRVS 833 (835)
Q Consensus 773 Di~YL~NVl~aLg~~-------~~---------~~L~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~mR~~~ 833 (835)
|.+-|++.+..|+-- +| ..++.+-+.|=+| +++|-+..--.. ...+..-...|=.|.|++
T Consensus 644 dt~slK~~ll~lp~~~s~~n~~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL~-~~~~~a~~~~vLelKgv~ 722 (793)
T KOG2180|consen 644 DTESLKDALLTLPPLRSLFNDKRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKLL-PDPDSAEWQKVLELKGVK 722 (793)
T ss_pred HHHHHHHHhhcCCchhhhccccchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhc-CCCcHHHHHHHHHhcCCc
Confidence 999999998666431 10 1123334444444 333333222111 115667788888888876
No 4
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.97 E-value=8.1e-29 Score=276.73 Aligned_cols=352 Identities=16% Similarity=0.234 Sum_probs=295.2
Q ss_pred CCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 003266 11 EKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGIL 90 (835)
Q Consensus 11 ~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~ 90 (835)
++|||+++||..||++.+ | ..+..+..+++..+.+++.+|.+.+++...+..+...+++.++..+..|..+|..|+
T Consensus 2 ~dfdpv~~in~lfp~e~S---L-~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik 77 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQS---L-SNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIK 77 (383)
T ss_pred CCCCHHHHHHHhCCChHH---H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999988 4 489999999999999999999999998888888888899999999999999999999
Q ss_pred HHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc---ccch
Q 003266 91 QKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAV---GEVA 167 (835)
Q Consensus 91 ~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l---~~~p 167 (835)
+++.+.|..+.+++++|++||.+|+||+.++++|++..+|.+...+++.+++.++|.++|..|.+|.+.+..| +++|
T Consensus 78 ~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~ 157 (383)
T PF04100_consen 78 SKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIP 157 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999655 8899
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC---C-------H-HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q 003266 168 EFANIRKQLEVLEDRLDAMVQPRLTDALSNR---K-------I-DIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWE 236 (835)
Q Consensus 168 ~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~---~-------~-~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~ 236 (835)
++....+.+..+++.|...+..+|..+|..+ + . ++|. ++++|+.-.| ..++.+||+.++..|.++|.
T Consensus 158 ~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~-vvd~L~~~~r-~~li~wf~~~qL~eY~~iF~ 235 (383)
T PF04100_consen 158 QIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACL-VVDALGPDVR-EELIDWFCNKQLKEYRRIFR 235 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHH-HHHHcCchHH-HHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999221 1 1 6677 9999999999 99999999999999999997
Q ss_pred HhhhhhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCchhchHHHHHHHHHHh
Q 003266 237 EFESRQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDYRTLVPKLLVETMAS 316 (835)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~~~l~~~ll~~~~~~ 316 (835)
... +++.+++ ..++| .||.++|...+++. ..|||.+|.+ +.-++..|+.
T Consensus 236 ~~~-------------e~~~Ld~--------i~RRy-----~Wfkr~L~~~e~~~---~~iFP~~W~v--~~~L~~~Fc~ 284 (383)
T PF04100_consen 236 END-------------EAASLDN--------IDRRY-----AWFKRLLKNFEEKF---ANIFPPSWRV--PERLCVEFCE 284 (383)
T ss_pred ccc-------------cccchhh--------HHHHH-----HHHHHHHHHHHhhc---cccCCCcCcH--HHHHHHHHHH
Confidence 532 3556775 44566 57889999999865 7999999975 6667777777
Q ss_pred hhccHHHHHhhhhCCCCchhhhhhhhhhhhccCCCCccchhhhhhHHHHHHHHHHHHHHHHHhhhhhccchh--------
Q 003266 317 VGGSFVSRINLATGDFVPETKALSKGILDILSGDMPKGIKLQTKHLEALIDLHNMTGTFARNIQHLFSESDL-------- 388 (835)
Q Consensus 317 l~~si~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~~~~~t~~F~~~l~~~~~~~~~-------- 388 (835)
++. ++|...+.+.. .+..+..|+.+.+.|..|++.+...|.+...
T Consensus 285 ~Tr---~dL~~iL~~~~------------------------~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~ 337 (383)
T PF04100_consen 285 ITR---KDLSEILSKRK------------------------SELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKK 337 (383)
T ss_pred HHH---HHHHHHHhhcC------------------------CCCcHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 666 66665442210 0125777889999999999999988843210
Q ss_pred --HH--HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccc
Q 003266 389 --QV--LLDTLKAVYFPYDTFKQRYGQMERAILSSEIAGVDL 426 (835)
Q Consensus 389 --~~--~~~l~~~i~~PF~~~~~~Y~~~E~~~L~~~l~~l~~ 426 (835)
.+ .....+.|...|.||+.-|.+.|++.|.+++..+..
T Consensus 338 ~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~ 379 (383)
T PF04100_consen 338 KEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFIS 379 (383)
T ss_pred ccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00 012444555666666666999999999999987644
No 5
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=99.92 E-value=2.1e-20 Score=226.53 Aligned_cols=575 Identities=16% Similarity=0.210 Sum_probs=387.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHH-----HHHHHh-hcCC---HHHHHHHHHHHHHHHhhcccchhHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSL-----TVEDVF-ASGD---LPRAAETLANMRHCLSAVGEVAEFANI 172 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~-----~ve~l~-~~~~---~~~ia~~L~~~~~sl~~l~~~p~~~~r 172 (835)
.+-.+|+.+++-|.|...|++.++ .|..+.. .++.++ ..++ ..++|..+..+.....-+.+.|.+...
T Consensus 24 ~iG~~Le~~~~~r~ra~~a~~Li~---~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~ls~~~~~~~~~~~~ 100 (710)
T PF07393_consen 24 HIGDQLESADRQRSRAIEAIELIP---YYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRLSKELSDIPGFEEA 100 (710)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHH---HHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 344589999999999999999999 6777664 455663 2232 344444444444444444489999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-------------HHHHHhh
Q 003266 173 RKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIK-------------QLWEEFE 239 (835)
Q Consensus 173 ~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~-------------~~W~~~~ 239 (835)
+..|+.+++.||..+..+|..++..+|.+.|++|+.||..++++..+++.|++.|..++. ..|+.+.
T Consensus 101 ~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~~~~~~~~~~~~~~~~~~l~ 180 (710)
T PF07393_consen 101 RENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDEDQLDESNGFEDEEIWEKLS 180 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhhhhhccccccchhHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999988872 4455544
Q ss_pred hhhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCchhchHHHHHHHHHHhhhc
Q 003266 240 SRQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDYRTLVPKLLVETMASVGG 319 (835)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~~~l~~~ll~~~~~~l~~ 319 (835)
+++.. ..-..+-|..||+++...+++|.+.+..|||+|..++ ..|+.++|. .
T Consensus 181 d~~~~------------------------~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm-~~fiervf~---~ 232 (710)
T PF07393_consen 181 DPDSH------------------------PPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVM-QKFIERVFE---Q 232 (710)
T ss_pred Ccccc------------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHH-HHHHHHHHH---H
Confidence 32211 0112334677999999999999999999999998887 789999998 6
Q ss_pred cHHHHHhhhhCCCCchhhhhhhhhhhhccCCCCccchhhhh-hHHHHHHHHHHHHHHHHHhhhhhccch----hHHHHHH
Q 003266 320 SFVSRINLATGDFVPETKALSKGILDILSGDMPKGIKLQTK-HLEALIDLHNMTGTFARNIQHLFSESD----LQVLLDT 394 (835)
Q Consensus 320 si~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~Ll~~~~~t~~F~~~l~~~~~~~~----~~~~~~l 394 (835)
.|+.+++..+..+. ..+++ +|+.|..+|..|..|...++..+...+ ......+
T Consensus 233 ~I~~~i~~lL~~a~----------------------~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l 290 (710)
T PF07393_consen 233 VIQEYIESLLEEAS----------------------SISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFL 290 (710)
T ss_pred HHHHHHHHHHHhhc----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHH
Confidence 78888887665431 11223 789999999999999999998843321 1133346
Q ss_pred HHHHhcccHHHH--HHHHHHHHHHHHHHHhccccc-----cc-c-c--------------------------cc------
Q 003266 395 LKAVYFPYDTFK--QRYGQMERAILSSEIAGVDLR-----GA-V-T--------------------------RG------ 433 (835)
Q Consensus 395 ~~~i~~PF~~~~--~~Y~~~E~~~L~~~l~~l~~~-----~~-~-~--------------------------~~------ 433 (835)
.+.+.+-|.+|+ ..|.+.|.++|...+.....+ .. + + ..
T Consensus 291 ~~~~~~lF~~~l~~~~Yl~~E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~ 370 (710)
T PF07393_consen 291 DQLVESLFEPYLEDDEYLEEEKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQIS 370 (710)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHh
Confidence 666778888888 899999999998876654221 00 0 0 00
Q ss_pred ------CCC-----------------C--CcchhHHHHHh-hhhHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 003266 434 ------IGA-----------------Q--GIELSETVRRM-EESIPQVIVLLEAAVERCISFTGGSEADELILALDDIML 487 (835)
Q Consensus 434 ------~~~-----------------~--~~~~~d~~~~l-~~s~~~lf~~~~~Av~RC~~lT~g~~~~~l~~al~~~l~ 487 (835)
+.. + ..++.+.-..+ .+.+..++.|+.+|+.||..|+++..++..+..+-.+|.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll 450 (710)
T PF07393_consen 371 SFMSSKLDRSQQQASLENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILL 450 (710)
T ss_pred hhhhcccCcccccccccchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 000 0 00011111123 556899999999999999999999999999999988888
Q ss_pred HHH-HHH-HHHHHHHH-hhhcCCCCCCCCccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 488 QYI-STL-QELLKSLR-AVCGVDHDGVGSKKEVGFDKKEGVSNARKADISSEEEWSIVQGALQILTVADCLTSRSSVFEA 564 (835)
Q Consensus 488 ~y~-~~~-~~~l~~lr-~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~edW~~~q~al~lL~~~~~l~~~~~~~E~ 564 (835)
+++ ..+ ...+..+- .....+.. ..+ ... .+. -+.+++.|..++.-+..+
T Consensus 451 ~~l~~~~i~~~lea~~~~~~~~~~~------~~~----------------~~~---~l~-fl~~i~~~~~i~~l~~~~-- 502 (710)
T PF07393_consen 451 QSLGEEHIEPALEAAYYKLSSQDIA------ESK----------------EVP---PLV-FLELINQADTILQLLQIF-- 502 (710)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccc------ccC----------------CCC---Ccc-HHHHHHHHHHHHHHHHHH--
Confidence 777 332 22343111 11111000 000 001 122 456666666666544332
Q ss_pred HHHHHHHHhhhhccccccCCCchhhhccccccCCCCCcccccchhhhHHHHhhhcCHHHHHHHHHHHhhcCCCCCCCCch
Q 003266 565 SLRATLARLSTSLSLSVFGSSLDQKQSQSANVDGHGELSVGGRAALDVAAVRLIDVPEKARKLFNLLDQSKDPRFHALPL 644 (835)
Q Consensus 565 ~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~l~~ll~~~~~~~~~~l~~ 644 (835)
+...|..+. . ++.+ +.. .--.....+.
T Consensus 503 -~~~~l~pl~---~-----~~~~------------------------~~~----~~~~~k~~~~---------------- 529 (710)
T PF07393_consen 503 -YKEELLPLI---Q-----SSPD------------------------FLN----ECIQKKKSFE---------------- 529 (710)
T ss_pred -HHHHHHHhc---c-----CCcH------------------------HHH----HHHHHHHHHH----------------
Confidence 223333111 0 1000 000 0000111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccC
Q 003266 645 ASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGI 724 (835)
Q Consensus 645 ~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~ 724 (835)
..+...+...=+..-|+++..|...|. -.+.....-.++. + .....|++.-+.|-++|-.+-..+-.+.+.
T Consensus 530 --~~le~~v~~gL~~~i~~l~~~v~~iL~-~Qkk~Df~p~~~~----~-~~~~~~T~ac~~vv~~L~~~~~~~~~~l~~- 600 (710)
T PF07393_consen 530 --SRLEEKVNAGLNKGIDVLMNWVEFILS-EQKKTDFKPKEDD----L-SLDQQPTPACQEVVEFLERHCSLLKGSLDG- 600 (710)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCccc----c-ccccCCCHHHHHHHHHHHHHHHHHHHHccc-
Confidence 233333333333345677778777776 3332233221111 0 134579999999999999887777776665
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHHHHHHHHcCCCC----hhhHHHHHHHhC
Q 003266 725 STSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVLSALSVPI----PPALATFHTCLS 800 (835)
Q Consensus 725 ~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL~NVl~aLg~~~----~~~L~~~~~ll~ 800 (835)
.-.+.++..|+......+++-|-+- ..+..|+=||..||.+..+++..++.+. ...|..+-.++-
T Consensus 601 ----------~nl~~f~~elg~~l~~~l~~h~kk~-~vs~~Gg~~l~~Dl~~Y~~~~~~~~~~~v~~~F~~L~~l~nl~~ 669 (710)
T PF07393_consen 601 ----------SNLDVFLQELGERLHRLLLKHLKKF-TVSSTGGLQLIKDLNEYQDFIRSWGIPSVDEKFEALKELGNLFI 669 (710)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHhC-ccCchhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhee
Confidence 4578899999999999999888664 4588999999999999999999999863 456788888888
Q ss_pred CCcHHHHHHhhhcCCCCCChhHHHHHHHHh
Q 003266 801 TPRDQLKDLLKSDSGNQLDLPTANLVCKIR 830 (835)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~mR 830 (835)
.+||..+++++.......++..+...-++|
T Consensus 670 v~~~~l~~~~~~~~~~~~~~~~i~~fi~~R 699 (710)
T PF07393_consen 670 VDPENLKELCREGQLGRFSPEEIYEFIQRR 699 (710)
T ss_pred ecHHHHHHHHhhccccCCCHHHHHHHHHHh
Confidence 999999999986433336777887777777
No 6
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.7e-10 Score=133.87 Aligned_cols=648 Identities=15% Similarity=0.178 Sum_probs=406.0
Q ss_pred CCCCCCCCHHHHHhhhcCCCCC-----C--cch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HH
Q 003266 7 PFSDEKFDPKKWINSACQTRHS-----Q--DSL--DNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVR-LR 76 (835)
Q Consensus 7 ~F~~~~FD~~~wIN~~~~~~~~-----~--~~l--d~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~-~~ 76 (835)
-|+..+|..-.+|+......+. + ..+ .+.+.++++-++.+. -++...+...+-.... +...+. ..
T Consensus 17 l~~~~~~~~~e~Ie~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~eL~-~L~e~~qnk~~~~e~~----~~~~q~s~~ 91 (763)
T KOG3745|consen 17 LFSCKDINSDEFIEKLVWRLPLVNRSFQQSKDLDPKGLIKTFENEIKELT-LLDERYQNKIRMLEEQ----MSTEQNSYK 91 (763)
T ss_pred HhcCCCcchHHHHHHHHhcCccccccccchhhcCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4666778899999977554431 1 112 367778877665554 3444333333322222 223444 88
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCh---H----HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHhhcCC
Q 003266 77 DDAISLRGSVSGILQKLKKAEGSS---A----ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSL----TVEDVFASGD 145 (835)
Q Consensus 77 ~ea~~L~~~l~~i~~~~~~~e~~~---~----~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~----~ve~l~~~~~ 145 (835)
+.+..|+.+.+....-..+.+... . .-=.+|++...=|+|.-++.+.++ .|..+.. .+-..+.+..
T Consensus 92 kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lgq~Le~v~~~r~r~~~a~~lir---~~~eF~s~~~~~i~s~i~~~~ 168 (763)
T KOG3745|consen 92 KKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLGQQLETVIKPRSRAVDAQELIR---YYNEFLSGGRQYINSDIFTSA 168 (763)
T ss_pred HHHHHHHHhhHHHHHHHhhhhccccccccccccHHHHHHHhhhhHHHHHHHHHHHH---HHHHHhccCchhHHHHHhcCh
Confidence 899999999998888888777653 1 111278899999999999999999 5887764 3444444443
Q ss_pred HHHHHHHHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHH
Q 003266 146 LPRAAETLANMRHCLSAV--GEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHY 223 (835)
Q Consensus 146 ~~~ia~~L~~~~~sl~~l--~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y 223 (835)
.+..-.....+++.+..= -..+++.+.+..|+..-.-||..+...|..+.++.|.+.++.+..||..+.+ +.+-|
T Consensus 169 ~~k~leaa~~~~kLl~isnel~~~~f~~tka~I~k~~~~lE~~lleeF~~~~R~~n~~~m~~~a~iL~~F~G---~v~~y 245 (763)
T KOG3745|consen 169 FDKNLEAADRIKKLLLISNELPYGKFSETKARIEKKYEVLEQNLLEEFNSAQREENIKKMAEFAKILSEFKG---VVRMY 245 (763)
T ss_pred hhhHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhcc---hHHHH
Confidence 444444444444444333 3344889999999999999999999999999999999999999999999999 77888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 003266 224 TKVHLKYIKQLWEEFESRQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDYR 303 (835)
Q Consensus 224 ~~~~~~~l~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~~ 303 (835)
.+||...+.. + -+++.+ ......+...+.+++..++.|-+.+..|||+|..
T Consensus 246 ~n~~d~fid~--~-~~~~~~--------------------------~fi~~~~~di~~D~~~l~~~~sk~ik~vf~~pe~ 296 (763)
T KOG3745|consen 246 LNCVDDFIDS--D-EFQPEQ--------------------------PFISNILQDIFNDILKLCESESKFIKRVFPNPET 296 (763)
T ss_pred HHhHHHHHHH--h-hccchh--------------------------hHHHHHHHHHHHHHHHHHHhHhHHHHHhCCCHHH
Confidence 9999999887 1 111111 0122247789999999999999999999999998
Q ss_pred chHHHHHHHHHHhhhccHHHHHhhhhCCCCchhhhhhhhhhhhccCCCCccchhhhh-hHHHHHHHHHHHHHHHHHhhhh
Q 003266 304 TLVPKLLVETMASVGGSFVSRINLATGDFVPETKALSKGILDILSGDMPKGIKLQTK-HLEALIDLHNMTGTFARNIQHL 382 (835)
Q Consensus 304 ~l~~~ll~~~~~~l~~si~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~Ll~~~~~t~~F~~~l~~~ 382 (835)
|+ ..|+.++|+ .+|++++...++.+ . .+.+.+ .++.|..++..+..+...+...
T Consensus 297 V~-q~~iq~If~---~~ik~~~~e~le~~-~--------------------~~~~~l~ylR~L~~Lys~~~k~~~~L~~~ 351 (763)
T KOG3745|consen 297 VL-QKFIQNIFG---QKIKDRVEELLEEC-K--------------------EGKDFLAYLRDLYGLYSSTLKLSKDLVDY 351 (763)
T ss_pred HH-HHHHHHHHH---HHHHHHHHHHHHHh-h--------------------ccccHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 76 889999998 78888887655422 0 011112 7888888888888888888776
Q ss_pred h----ccchhHHHHHHHHHHhcccHHHHHHHHHHHHHHH----------HHHHhccccc-cccccc--------------
Q 003266 383 F----SESDLQVLLDTLKAVYFPYDTFKQRYGQMERAIL----------SSEIAGVDLR-GAVTRG-------------- 433 (835)
Q Consensus 383 ~----~~~~~~~~~~l~~~i~~PF~~~~~~Y~~~E~~~L----------~~~l~~l~~~-~~~~~~-------------- 433 (835)
+ ...+.. -+.....+.|..|.+.|.+.|.+.+ ...-+....+ -..|++
T Consensus 352 ~e~~~~~~d~~---~lst~~~q~f~~~~~~y~e~e~~~~~n~~~~~~~~~~k~s~~l~~~~~sp~~h~k~~~t~~~~~ld 428 (763)
T KOG3745|consen 352 FEQLFISDDNQ---FLSTLLEQIFIDYLAKYIEVEDKYLQNTLKNLFLETFKCSTLLPRFYESPKEHQKSNSTELGGKLD 428 (763)
T ss_pred HHhhccCcchh---HHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhHHHHHHHHHhHHHHhcCchhhhhhhcccccccch
Confidence 3 222222 2455666778888888999999998 2221111000 011221
Q ss_pred ----CCCCC-----------cchhHHHH--Hh--hhhHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 003266 434 ----IGAQG-----------IELSETVR--RM--EESIPQVIVLLEAAVERCISFTGGSEADELILALDDIMLQYISTLQ 494 (835)
Q Consensus 434 ----~~~~~-----------~~~~d~~~--~l--~~s~~~lf~~~~~Av~RC~~lT~g~~~~~l~~al~~~l~~y~~~~~ 494 (835)
+.+.. ...++... .+ ++-+.+++++..+|.+||..|.+...+|-.+.-+-.+|.+++-.=-
T Consensus 429 ~~~~v~~r~N~~~d~~~~~~a~~s~~l~g~Tfis~dl~~~iLqe~kes~~Ra~~l~~~~dlp~~~l~i~~iLl~~L~~~h 508 (763)
T KOG3745|consen 429 AKTLVAARTNTSKDRLAYQAAVISENLGGETFISEDLAIKILQETKESLARAKVLIDPQDLPLNILEIFKILLKFLGQEH 508 (763)
T ss_pred hhHHHHHhhcCchhHHHHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 00000 01111100 11 4457889999999999999999999988888777777776665411
Q ss_pred --HHHHHHHhhhcCCCCCCCCccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 495 --ELLKSLRAVCGVDHDGVGSKKEVGFDKKEGVSNARKADISSEEEWSIVQGALQILTVADCLTSRSSVFEASLRATLAR 572 (835)
Q Consensus 495 --~~l~~lr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~edW~~~q~al~lL~~~~~l~~~~~~~E~~l~~~l~~ 572 (835)
-++.. ..|+++... ++ . .+++ .| +.+++.|+.++.- |...+.+-+..
T Consensus 509 v~~ale~--a~~~is~a~------~~-v---------ep~l-------~F---l~~I~~~~~I~~l---~s~~~~~~~iP 557 (763)
T KOG3745|consen 509 VDYALET--ALAGISSAD------TR-V---------EPNL-------YF---LEVINKGDIILQL---MSKFFKSELIP 557 (763)
T ss_pred HHHHHHH--HhcCCChhh------cC-C---------Ccch-------HH---HHHHHHhhHHHHH---HHHHHhcccCc
Confidence 11211 234432211 00 0 0111 12 3455556555532 22222222221
Q ss_pred hhhhccccccCCCchhhhccccccCCCCCcccccchhhhHHHHhhhcCHHHH----HHHHHHHhhcCCCCCCCCchHHHH
Q 003266 573 LSTSLSLSVFGSSLDQKQSQSANVDGHGELSVGGRAALDVAAVRLIDVPEKA----RKLFNLLDQSKDPRFHALPLASQR 648 (835)
Q Consensus 573 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~----~~l~~ll~~~~~~~~~~l~~~~~~ 648 (835)
+ ++ .+|+.. ....+.+ +.
T Consensus 558 ~---i~----------------------------------------~t~d~~~~~i~~kk~~i---------------~~ 579 (763)
T KOG3745|consen 558 L---IS----------------------------------------VTPDKLSEVIQKKKSFI---------------QS 579 (763)
T ss_pred c---cc----------------------------------------CChhhhHHHHHHHHHHH---------------HH
Confidence 0 00 011111 1111222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccCCCCC
Q 003266 649 VAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGISTSD 728 (835)
Q Consensus 649 ~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~~~~~ 728 (835)
+...+...=+-.-.+++..++-.|+......-... + ..+.|+-..-| .++|.++|..--.+|...+++
T Consensus 580 iE~~v~~gL~~tIn~li~~~~~il~~~qkk~df~p-~---s~~s~~~~~~p---a~~vVq~L~~~~~~l~~~~dg----- 647 (763)
T KOG3745|consen 580 IEEKVAFGLDRTINVLIGHVKFILSTEQKKTDFKP-D---SINSLTRDIEP---AIRVVQFLGNHIEQLKGRLDG----- 647 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-c---ccCcchhhhHH---HHHHHHHHHHHHHHHHcccCC-----
Confidence 22222222222222666666666665554433332 1 12344433444 889999999888888877765
Q ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHHHHHHHHcCCCC----hhhHHHHHHHhCCCcH
Q 003266 729 NNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVLSALSVPI----PPALATFHTCLSTPRD 804 (835)
Q Consensus 729 ~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL~NVl~aLg~~~----~~~L~~~~~ll~~~~~ 804 (835)
+-.+.++..++...-...+.-+-+ ...|..||-=|..|+.|+...++.+|++. ...|..+..|+-..|+
T Consensus 648 ------~nLd~~~~eig~rlf~~l~~hl~~-~~~s~~Gal~licDvn~y~~~i~~~~~~~vl~~F~tL~~L~nLliV~pd 720 (763)
T KOG3745|consen 648 ------ENLDVFLQEIGTRLFRLLLSHLQQ-FKVSTAGALLLICDVNEYRTFIHSLGQPSVLPYFKTLKALANLLIVKPD 720 (763)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHH-heeccccceeeeccHHHHHHHHHHhCcccHHHHHHHHHHHHHHHeeChh
Confidence 345666666666655555544333 35678888889999999999999999854 4677788888889999
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHh
Q 003266 805 QLKDLLKSDSGNQLDLPTANLVCKIR 830 (835)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~v~~mR 830 (835)
...+++++.-..+.+..++.-+=+.|
T Consensus 721 ~l~ev~k~~~la~f~~~~I~efv~lR 746 (763)
T KOG3745|consen 721 NLEEVGKGKFLANFDREEIHEFVQLR 746 (763)
T ss_pred hHHHHhchhhhccccHHHHHHHHHHh
Confidence 99999997543446777777666665
No 7
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2e-06 Score=96.65 Aligned_cols=610 Identities=18% Similarity=0.189 Sum_probs=313.4
Q ss_pred CCCCCCCCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q 003266 3 LDLGPFSDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISL 82 (835)
Q Consensus 3 ~dls~F~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L 82 (835)
+|-+.|..+||||..|+|.+=... .+.+|-.-|.++-.-+++++-++|++-...-=-+..-+-.|.+.+..+
T Consensus 23 Fdk~eFmkedFdve~f~s~~R~~v--------~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i 94 (705)
T KOG2307|consen 23 FDKTEFMKEDFDVERFMSLARQKV--------DLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKI 94 (705)
T ss_pred cChhhhccccCCHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHH
Confidence 566789999999999999763322 355777778888888888888887744322111111122233333333
Q ss_pred HHHHHHHHHHHHhhhcChHHHHHH-------HHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhc----------CC
Q 003266 83 RGSVSGILQKLKKAEGSSAESIAA-------LSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFAS----------GD 145 (835)
Q Consensus 83 ~~~l~~i~~~~~~~e~~~~~~~~~-------L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~----------~~ 145 (835)
+.-+..++++|...-+.+.+.++. +..+-..|.-+...+..+.- ...+.+++.+ -+
T Consensus 95 ~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~-------ieKL~k~L~s~psk~q~~~a~s 167 (705)
T KOG2307|consen 95 EQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVA-------IEKLSKMLLSPPSKEQQDGATS 167 (705)
T ss_pred HhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCcccccccccch
Confidence 333334444444433333333332 22222223223333322222 1233333333 24
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHH
Q 003266 146 LPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTK 225 (835)
Q Consensus 146 ~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~ 225 (835)
++.||--|..++--++..++. -+..-...+.+.+..|.+.+..-|...+++ +++.+.+|..|+..|+--.+-+..+..
T Consensus 168 LERiAlelnqlkf~a~h~k~~-l~p~~e~ria~~~~~L~qsl~~lf~eglqs-a~~~l~nclriYatld~t~~ae~lfr~ 245 (705)
T KOG2307|consen 168 LERIALELNQLKFHASHLKGS-LFPHSEERIAAEKIILSQSLAVLFAEGLQS-AAGDLQNCLRIYATLDLTESAESLFRL 245 (705)
T ss_pred HHHHHHHHHHHHHHHHHhhcc-cCcchhhHHhhHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 788888888888777777774 444445556667777888888888999944 999999999999999998888888777
Q ss_pred HHHHHHHHHH--HHhhhhhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHH-HHHHHHhhhcCCch
Q 003266 226 VHLKYIKQLW--EEFESRQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLE-QEWKWCMVAFPDDY 302 (835)
Q Consensus 226 ~~~~~l~~~W--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~-~E~~w~~~vFp~~~ 302 (835)
.-.++|-.-. ++..+ .+| .-|...|..|+..+. .--+|...+-..+-
T Consensus 246 ~vvapyi~evI~eq~~e----------------~sp--------------~gl~~~ykqilefv~~h~c~llre~tssdk 295 (705)
T KOG2307|consen 246 LVVAPYIAEVINEQHDE----------------TSP--------------SGLLKLYKQILEFVKKHRCTLLREMTSSDK 295 (705)
T ss_pred HHHHHHHHHHHhhhhcc----------------CCc--------------hhHHHHHHHHHHHHHHHHHHHHHHhchhhc
Confidence 7777765443 22111 111 134458888887776 33355543331111
Q ss_pred hc-hHHHHHHHHHHhhhccHHHHHhhhhCCC-CchhhhhhhhhhhhccCCCCccchhhhhhHHHHHHHHHHHHHHHHHhh
Q 003266 303 RT-LVPKLLVETMASVGGSFVSRINLATGDF-VPETKALSKGILDILSGDMPKGIKLQTKHLEALIDLHNMTGTFARNIQ 380 (835)
Q Consensus 303 ~~-l~~~ll~~~~~~l~~si~~~l~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ll~~~~~t~~F~~~l~ 380 (835)
.- -.-.|+...+- +-|-..|+..++.+ +| ..-+..++.|.+|..|.++++
T Consensus 296 ~g~~~fdFlvnS~l---~~ilt~iek~mps~f~P-------------------------gnp~~F~ekyk~t~DFl~~le 347 (705)
T KOG2307|consen 296 RGLPGFDFLVNSLL---TFILTFIEKCMPSVFVP-------------------------GNPRLFHEKYKLTQDFLDNLE 347 (705)
T ss_pred CCCchHHHHHHHHH---HHHHHHHHHhcccccCC-------------------------CCcHHHHHHHHHHHHHHHhcc
Confidence 00 01235544332 33333444333221 11 123446778999999999998
Q ss_pred hhhccchhHHHHH-HHHHHhcccHHHHH--HHHHHHH----HHHHHHHhcccccccccccCCCCCcchhHHHHHhhhhHH
Q 003266 381 HLFSESDLQVLLD-TLKAVYFPYDTFKQ--RYGQMER----AILSSEIAGVDLRGAVTRGIGAQGIELSETVRRMEESIP 453 (835)
Q Consensus 381 ~~~~~~~~~~~~~-l~~~i~~PF~~~~~--~Y~~~E~----~~L~~~l~~l~~~~~~~~~~~~~~~~~~d~~~~l~~s~~ 453 (835)
+...=.....+.. --.+++.-|..--. -|.+++- ..+++.|...... .|- .++..|.. .+-.-
T Consensus 348 ~~~tC~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLtp~~~~--d~l-----~d~~~Est---~~l~l 417 (705)
T KOG2307|consen 348 SSHTCRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALTPEMFA--DPL-----TDENREST---PQLHL 417 (705)
T ss_pred ccCcCchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcCchhhc--ccc-----cccccccC---ccchh
Confidence 7421111111100 01122222221100 1222222 2333333321110 000 11111210 01123
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccccccccccccccccccc
Q 003266 454 QVIVLLEAAVERCISFTGGSEADELILALDDIMLQYISTLQELLKSLRAVCGVDHDGVGSKKEVGFDKKEGVSNARKADI 533 (835)
Q Consensus 454 ~lf~~~~~Av~RC~~lT~g~~~~~l~~al~~~l~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 533 (835)
.++..+-+|+.||.+ .+-=+|.++.-+-++-.+-+.+|..=+..|...-+.+.+ .
T Consensus 418 ~as~a~~ealrrcWs--ddvylp~~vdKl~rltlQlllRysrwisaitns~gs~~s----------k------------- 472 (705)
T KOG2307|consen 418 GASRAIIEALRRCWS--DDVYLPPIVDKLWRLTLQLLLRYSRWISAITNSFGSEKS----------K------------- 472 (705)
T ss_pred hHhHHHHHHHHHHcc--ccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCC----------C-------------
Confidence 345567799999996 567778888777666666666666544444332111110 0
Q ss_pred CchhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCchhhhccccccCCCCCcccccch
Q 003266 534 SSEEEWSIVQGAL-----QILTVADCLTSRSSVFEASLRATLARLSTSLSLSVFGSSLDQKQSQSANVDGHGELSVGGRA 608 (835)
Q Consensus 534 ~~~edW~~~q~al-----~lL~~~~~l~~~~~~~E~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 608 (835)
--+|+.+=.++ .+=.+|++++. .+...+..+.+.+
T Consensus 473 --p~trtqlvyv~hdd~~llqevl~elle-------~I~~kl~~~~k~~------------------------------- 512 (705)
T KOG2307|consen 473 --PATRTQLVYVRHDDGNLLQEVLPELLE-------SIWGKLHDITKVF------------------------------- 512 (705)
T ss_pred --CcchhheeeeecccchHHHHHhHHHHH-------HHHhhccchhhhh-------------------------------
Confidence 01222221111 11123344432 1111111000000
Q ss_pred hhhHHHHhhhcCHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccc
Q 003266 609 ALDVAAVRLIDVPEKARKLFNLLDQSKDPRFHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQS 688 (835)
Q Consensus 609 ~~d~~~~~l~~~~~~~~~l~~ll~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~ 688 (835)
.|+.+..+.++- ..| .+.+-.+.+..-+..-|+++.-||+ +.++|++=-|+..+
T Consensus 513 -sdv~a~sle~~g---~Sl------------------~a~lp~i~ktIIe~lsd~~~~~lrq-v~dvprlyR~TnKe--- 566 (705)
T KOG2307|consen 513 -SDVFAQSLEKHG---RSL------------------DALLPQIDKTIIEMLSDVCHQELRQ-VSDVPRLYRWTNKE--- 566 (705)
T ss_pred -HHHHHHHHHHhc---ccH------------------HHHhhhHHHHHHHHHHHHHHHHHHH-HhccHHHHHhccCC---
Confidence 011211111111 001 1122233333344444555555554 56699988887544
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccc---------
Q 003266 689 AFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRGI--------- 759 (835)
Q Consensus 689 ~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I--------- 759 (835)
+|+ .-+.||.+.=+-+.++-+.++-=.+ .....+||..++..++..|.+.+.-.
T Consensus 567 ---vPt---thSsYVv~aLrpvkal~eg~k~~L~-----------q~~~eeil~gv~seit~~yye~vsDVl~sv~ktes 629 (705)
T KOG2307|consen 567 ---VPT---THSSYVVTALRPVKALKEGLKCELE-----------QPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTES 629 (705)
T ss_pred ---CCC---cchHHHHHHHHHHHHHHHhhhhhhc-----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 2256877766666666555554322 36778999999999999986543221
Q ss_pred -----c--CC---------------CHhHHhhhHhhHHHHHHHHHHcCCCCh--hhHHHHHHHhCCCcHH
Q 003266 760 -----Q--YI---------------TDHGAQQLSVDIEYLSNVLSALSVPIP--PALATFHTCLSTPRDQ 805 (835)
Q Consensus 760 -----~--~L---------------t~~ga~QLa~Di~YL~NVl~aLg~~~~--~~L~~~~~ll~~~~~~ 805 (835)
+ .= ++.=+.||..|+.|+..-+..|+.+-. ..|+.++.+..+..|+
T Consensus 630 SL~Rlkq~~~~~~g~s~gss~~vSddDKir~QL~lDv~~~~s~~~kL~fqa~di~~~~~lvel~~~~~ds 699 (705)
T KOG2307|consen 630 SLSRLKQKTTTDSGSSGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKLVFQAADITGLQELVELFDKDADS 699 (705)
T ss_pred HHHHHHhhccCCCCCCCCCCCCcCcchHHHHHHHHHHHHHHHHHHHhcchHhhhhhHHHHHHHHHhhhhh
Confidence 1 00 234468999999999999999999762 3445666666655443
No 8
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.71 E-value=1.5e-05 Score=86.97 Aligned_cols=229 Identities=16% Similarity=0.253 Sum_probs=173.8
Q ss_pred CCCCCCCHHHHHhhhcCCC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 003266 8 FSDEKFDPKKWINSACQTR-HSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSV 86 (835)
Q Consensus 8 F~~~~FD~~~wIN~~~~~~-~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l 86 (835)
|=+++|||.+++=+.+|.. .....++.....|...|+.....++..|.+.+..-... +..+..++.++..-...+
T Consensus 8 yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a----~~~v~el~~~l~~a~~~~ 83 (291)
T PF10475_consen 8 YFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQA----MSSVQELQDELEEALVIC 83 (291)
T ss_pred hcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3344799999875555555 23223444455555555555556666666665544444 777777888888888888
Q ss_pred HHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccc
Q 003266 87 SGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEV 166 (835)
Q Consensus 87 ~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~ 166 (835)
...++.++.+.......--.|.++.+-|+|+....+.|+.-.........|+.++.+|||..+-+-+.+.++.+..+.+.
T Consensus 84 ~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~ 163 (291)
T PF10475_consen 84 KNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGY 163 (291)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888765554446778999999999999999988888888899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 167 AEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGR----FKSLELHYTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 167 p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R----~~~l~~~Y~~~~~~~l~~~W~~~~~ 240 (835)
.=+.+...+++....+++.++...|......=|++.-..+...+.-+|. ++.+..+|.+.-.....++-..+..
T Consensus 164 ~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~ 241 (291)
T PF10475_consen 164 SCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVE 241 (291)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888877777777666665 3455566666655555555545443
No 9
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.011 Score=69.39 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=123.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHh---------hcccchhHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLS---------AVGEVAEFANI 172 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~---------~l~~~p~~~~r 172 (835)
+...++++||.+|.|.-.|.+-.+.--.+..-...|...+.+.||+.+|..+.+....=. ..+.+.++.+-
T Consensus 102 ~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~ 181 (773)
T KOG0412|consen 102 TVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDP 181 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhH
Confidence 344489999999999887776666544455556778888999999999998887654422 22334467778
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhhhhhhh
Q 003266 173 RKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEE-FESRQRSSKIANEK 251 (835)
Q Consensus 173 ~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~-~~~~~~~~~~~~~~ 251 (835)
.+.++.-+++|+..+..+|..|.+.+|......|+++|--||-...=.+.|..--..-|-..=+. +...-
T Consensus 182 ~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~kar~~l~n~~--------- 252 (773)
T KOG0412|consen 182 YETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIASKARKNLANVK--------- 252 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 88999999999999999999999999999999999999999887665555543322222111111 11000
Q ss_pred hhhhhcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCc
Q 003266 252 NEVERISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDD 301 (835)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~ 301 (835)
+++.-+| --..-|+.-|..||..+...++.-...+....+..
T Consensus 253 -~~~~~~~-------r~qv~fad~Lt~lfe~va~IIe~n~piie~~YG~~ 294 (773)
T KOG0412|consen 253 -AGMEDDN-------RRQVFFADTLTMLFEGVARIIEANQPILETYYGLK 294 (773)
T ss_pred -hccccCc-------hhHhHHHHHHHHHHHHHHHHHHcccHHHHHHhCch
Confidence 0111111 01235677778888777777776555554444443
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=98.10 E-value=0.01 Score=69.76 Aligned_cols=352 Identities=15% Similarity=0.137 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHhcccccc-cccccCCCCC
Q 003266 362 LEALIDLHNMTGTFARNIQHLFSESDLQVLLDTLKAVYFPY--DTFKQRYGQMERAILSSEIAGVDLRG-AVTRGIGAQG 438 (835)
Q Consensus 362 l~~Ll~~~~~t~~F~~~l~~~~~~~~~~~~~~l~~~i~~PF--~~~~~~Y~~~E~~~L~~~l~~l~~~~-~~~~~~~~~~ 438 (835)
...+..+-..+..|-+.+...+.-.. +|.....+-| ..+.+++.+.|++.-...+..+...+ ++... .
T Consensus 93 ~~~l~HlI~e~~~FD~~L~~~~~y~~-----d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~----~ 163 (494)
T PF04437_consen 93 PSLLSHLIDEILSFDKELRSLYGYPG-----DWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQID----Y 163 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS---S-----------CGGGS-HHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCC-----ccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhh----h
Confidence 34455556677788888876632111 0222222222 36678899999999988888754321 11100 0
Q ss_pred cchhHHH--HHhhhhHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcc
Q 003266 439 IELSETV--RRMEESIPQVIVLLEAAVERCISFTGG-SEADELILALDDIMLQYISTLQELLKSLRAVCGVDHDGVGSKK 515 (835)
Q Consensus 439 ~~~~d~~--~~l~~s~~~lf~~~~~Av~RC~~lT~g-~~~~~l~~al~~~l~~y~~~~~~~l~~lr~~~~~~~~~~~~~~ 515 (835)
++..... -+.-.++..+..+++.-.+||.-|..- +-+.-+...=-.++.+|...+...++..-..... .
T Consensus 164 ~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~s~---~----- 235 (494)
T PF04437_consen 164 DDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESSTST---L----- 235 (494)
T ss_dssp --HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT------------
T ss_pred ccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---h-----
Confidence 1110011 123568899999999999999998753 3343344555556677777666554433221100 0
Q ss_pred ccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCchhhhccccc
Q 003266 516 EVGFDKKEGVSNARKADISSEEEWSIVQGALQILTVADCLTSRSSVFEASLRATLARLSTSLSLSVFGSSLDQKQSQSAN 595 (835)
Q Consensus 516 ~~~s~~~~~~~~~~~~~~~~~edW~~~q~al~lL~~~~~l~~~~~~~E~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~ 595 (835)
. ....=..++..|.+++.+.++...+.+..+.+-=- ..... ...
T Consensus 236 --~----------------~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Fl------q~~~~---~~~--------- 279 (494)
T PF04437_consen 236 --A----------------SLSGDSGLERLCKILNSANYIENVLREWSEDVFFL------QMRAK---ESE--------- 279 (494)
T ss_dssp --S----------------CEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH--------------------------
T ss_pred --h----------------hccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeee------hhhcc---chh---------
Confidence 0 01122478888999999999998877776653210 00000 000
Q ss_pred cCCCCCcccccchhhhHHHHhhhcCHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 003266 596 VDGHGELSVGGRAALDVAAVRLIDVPEKARKLFNLLDQSKDPRFHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDV 675 (835)
Q Consensus 596 ~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~l~~ll~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~ 675 (835)
+. . ..+-...+...+.....|.........+...+...+-+.+..-|+..++.|
T Consensus 280 ------------------------~~-~-~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y 333 (494)
T PF04437_consen 280 ------------------------SS-N-NSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAY 333 (494)
T ss_dssp ------------------------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHH
T ss_pred ------------------------hc-c-cccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 011112222222345667777788889999999999999999999999999
Q ss_pred CCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 003266 676 SRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQ 755 (835)
Q Consensus 676 ~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~ 755 (835)
-+...|...+...+ ..+..|+. .+...|-.|+.+|--+....+ +..+...| ..|+..+...+.+.
T Consensus 334 ~k~~~W~~~~~~~~----~~~~~~S~---el~~~L~~L~~~L~~L~~~L~-------~~~f~~i~-r~ia~~l~~~l~~~ 398 (494)
T PF04437_consen 334 FKRSQWSSIESPSD----SSPLSPSP---ELVPALSLLRSRLSFLERSLP-------PADFRRIW-RRIASKLDDYLWES 398 (494)
T ss_dssp HT--GGGT-----------------G---GGHHHHHHHHHHHHHHHTS---------HHHHHHHH-HHHHHHHHHHHHHT
T ss_pred hCccCCCCcccccc----cccCCCCH---HHHHHHHHHHHHHHHHHHHcC-------HHHHHHHH-HHHHHHHHHHHHHH
Confidence 88889988765311 11223332 223333333333333222211 03455555 56888888888898
Q ss_pred hccccCCCHhHHhhhHhhHHHHHHHHHHcCCCChhh---HHHHHHHhCCCcHHHH
Q 003266 756 LRGIQYITDHGAQQLSVDIEYLSNVLSALSVPIPPA---LATFHTCLSTPRDQLK 807 (835)
Q Consensus 756 i~~I~~Lt~~ga~QLa~Di~YL~NVl~aLg~~~~~~---L~~~~~ll~~~~~~~~ 807 (835)
|......|..|+.||..|+.+|+.++......|... |.....+|+++.+..+
T Consensus 399 Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p~~~f~~l~E~~~LL~L~~~~~~ 453 (494)
T PF04437_consen 399 ILMSNKFSRAGAAQLQFDMRALFSVFSQYTPRPEAFFKRLREACKLLNLPYGSAK 453 (494)
T ss_dssp TTTTS-B-HHHHHHHHHHHHHHHTTS--TTSGG-HHHHHHHHHHHHHGGGG-CGG
T ss_pred hhhcCeeChhHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHcCCCCcchh
Confidence 888899999999999999999999999965555444 4445556777766544
No 11
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=98.06 E-value=0.00011 Score=70.69 Aligned_cols=127 Identities=16% Similarity=0.256 Sum_probs=95.2
Q ss_pred CCCCCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhchhHHHHHHHHHHHHH
Q 003266 6 GPFSDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSA----SALLRVPRATRDVVRLRDDAIS 81 (835)
Q Consensus 6 s~F~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~----~~l~~~Pr~~~dve~~~~ea~~ 81 (835)
+.|.+++|||+.|-|.++.+.....+=..-+++-+.||+--+++++..|.+.+. +++.. +..++.++.....
T Consensus 1 e~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q----~~~~~~~~~~l~~ 76 (132)
T PF10392_consen 1 EAFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQ----ASSIEELESVLQA 76 (132)
T ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH----HHhHHHHHHHHHH
Confidence 479999999999999999843322111234777778888888888888877764 45544 6667777777777
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 003266 82 LRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLT 136 (835)
Q Consensus 82 L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ 136 (835)
++..+..+...++.+...+.+=-..++.+..+=.|+..+.+.|+.+..+-.|.++
T Consensus 77 v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L~~r 131 (132)
T PF10392_consen 77 VRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQLVRR 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888887777777666555567888888999999999999987777666554
No 12
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.2 Score=58.81 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=153.3
Q ss_pred CCCCCCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hchhHHHHHHHHHHHHH
Q 003266 5 LGPFSDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLR---VPRATRDVVRLRDDAIS 81 (835)
Q Consensus 5 ls~F~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~---~Pr~~~dve~~~~ea~~ 81 (835)
++.|.+..|++.-+--....+.. +-..+..|-.+|+.+-.++.+++-..=-+.+.- .-+.--++..++..+..
T Consensus 50 ls~fln~~fSv~~~tSas~~s~~----ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~ 125 (797)
T KOG2211|consen 50 LSSFLNTLFSVQMMTSASKESNR----IATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAE 125 (797)
T ss_pred ccccccchhhhhhHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 56777777888775544443332 245677777777777777766665543333322 11222233335555555
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC--CHHHHHHHHHHHHHH
Q 003266 82 LRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASG--DLPRAAETLANMRHC 159 (835)
Q Consensus 82 L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~--~~~~ia~~L~~~~~s 159 (835)
|++.+++|+.++ .+-.+.+..=..+=.||..|.+.|+++-.--.|.+.+.++...+ |+-++|+.+.++-..
T Consensus 126 lqs~i~riknd~-------~epyk~i~~kt~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~d~traaq~lneLd~l 198 (797)
T KOG2211|consen 126 LQSEIKRIKNDN-------KEPYKIIWLKTMVLTRLHVAENLLRRSGRALELSKKLASLNSSMVVDATRAAQTLNELDSL 198 (797)
T ss_pred HHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHhHHHHHHHHHHHHHH
Confidence 555555555554 34445555556677888888999998877778889999887664 688999999999988
Q ss_pred Hhhc--ccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHH
Q 003266 160 LSAV--GEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIG----RFKSLELHYTKVHLKYIK 232 (835)
Q Consensus 160 l~~l--~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~----R~~~l~~~Y~~~~~~~l~ 232 (835)
+.++ .++..+.+....+-+-..+++....|.+.+-+..++..++-.=..||..+| -.+.+.+-|+..-...++
T Consensus 199 ~e~~dlsgIdvId~el~fv~~s~~evrN~a~~vLe~glq~~ne~qvgtglqvfynfgtLekt~d~lv~~y~ad~e~sl~ 277 (797)
T KOG2211|consen 199 LEVLDLSGIDVIDKELMFVSNSSPEVRNKALPVLEAGLQSHNEQQVGTGLQVFYNFGTLEKTADLLVSRYPADTEYSLR 277 (797)
T ss_pred HHHhhhcchHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhcHHHHhhHHHHHHhcchHHHHHHHHHHhcccchHHHHH
Confidence 8755 888899999999999999999999999999999999888877788888888 335666777766666655
No 13
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=97.68 E-value=0.0048 Score=68.05 Aligned_cols=243 Identities=18% Similarity=0.297 Sum_probs=135.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHH-HHHHhhhcCCCCCCCCccccccccccccc
Q 003266 449 EESIPQVIVLLEAAVERCISFTGGSEADELILALDDIMLQYISTLQ-ELL-KSLRAVCGVDHDGVGSKKEVGFDKKEGVS 526 (835)
Q Consensus 449 ~~s~~~lf~~~~~Av~RC~~lT~g~~~~~l~~al~~~l~~y~~~~~-~~l-~~lr~~~~~~~~~~~~~~~~~s~~~~~~~ 526 (835)
.+..+.+...++.-+..|..|..+... -...+++++.++++.+- ..+ ..|++....
T Consensus 31 S~~vp~~c~~ir~fi~~~~~F~~~~~~--~~~eid~~v~ks~d~lL~~~l~~~L~~~i~~-------------------- 88 (311)
T PF04091_consen 31 SQMVPMCCRQIRSFIEKCYKFSDDLYQ--SSTEIDDIVRKSLDRLLTRVLNGSLKSKIRS-------------------- 88 (311)
T ss_dssp BTHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 567889999999999999999988866 34445556666666652 322 234433210
Q ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCchhhhccccccCCCCCccccc
Q 003266 527 NARKADISSEEEWSIVQGALQILTVADCLTSRSSVFEASLRATLARLSTSLSLSVFGSSLDQKQSQSANVDGHGELSVGG 606 (835)
Q Consensus 527 ~~~~~~~~~~edW~~~q~al~lL~~~~~l~~~~~~~E~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 606 (835)
. ..+..+.|++..+..+...+..||+-+..... .. ... . +
T Consensus 89 ---------~---~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~-~~-~~~--------~----------~-------- 128 (311)
T PF04091_consen 89 ---------S---LNLSQIVQIVINLEYLEKACKELEEFLSSLRG-IP-QSA--------G----------G-------- 128 (311)
T ss_dssp ---------T---S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------------------------
T ss_pred ---------C---CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-CC-ccc--------h----------H--------
Confidence 0 14556788888889999999999987654431 00 000 0 0
Q ss_pred chhhhHHHHhhhcCHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccc
Q 003266 607 RAALDVAAVRLIDVPEKARKLFNLLDQSKDPRFHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEE 686 (835)
Q Consensus 607 ~~~~d~~~~~l~~~~~~~~~l~~ll~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~ 686 (835)
+ . . + .+...+...-+.++.-+++.+-+.|..-+ ++..- .|.....
T Consensus 129 --------------~--~-~----l------------~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l-ela~y-DW~~~~~ 173 (311)
T PF04091_consen 129 --------------H--I-R----L------------KATKMFKDARKAAEKRIFELVNSKIDEFL-ELAEY-DWTPTEP 173 (311)
T ss_dssp ------------------------------------------S---TTHHHHHHHHHHHHHHHHHH-TT--T-T------
T ss_pred --------------h--H-h----h------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccc-ceecCCC
Confidence 0 0 0 0 00012222234556666677777777767 45554 5987554
Q ss_pred cccCCCCCCCCChhHHHHHHHHHHHhhh-hhhhhhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHh--ccccCCC
Q 003266 687 QSAFHLPTFSAYPQTYVTSVGEYLLTLP-QQLEPLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQL--RGIQYIT 763 (835)
Q Consensus 687 ~~~~~lP~fs~~P~eyIt~IGe~Ll~LP-q~LEp~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i--~~I~~Lt 763 (835)
...|++||..+..||-++= ..|..+= ..++...+......+...+++-+ ..++.+|
T Consensus 174 ---------~~~ps~yi~dli~fL~~~f~s~l~~LP------------~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in 232 (311)
T PF04091_consen 174 ---------PGEPSDYINDLIQFLETTFSSTLTNLP------------PSVKQLVYFSACDHISESLLDLLLSDDVKRIN 232 (311)
T ss_dssp -----------S--HHHHHHHHHHHHHHHTTTTTSH-------------HHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHhcCC------------HHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 3459999999999999887 3344322 35888889999999999999988 8999999
Q ss_pred HhHHhhhHhhHHHHHHHHHHc-----CCC----ChhhHHHHHHHhCC-CcHHHHHH
Q 003266 764 DHGAQQLSVDIEYLSNVLSAL-----SVP----IPPALATFHTCLST-PRDQLKDL 809 (835)
Q Consensus 764 ~~ga~QLa~Di~YL~NVl~aL-----g~~----~~~~L~~~~~ll~~-~~~~~~~~ 809 (835)
..|.+|+..|+.||....+.+ +.. ....|.++..|+.. .+++|..-
T Consensus 233 ~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~ 288 (311)
T PF04091_consen 233 MNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDP 288 (311)
T ss_dssp -TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCc
Confidence 999999999999999999999 432 22445555555444 46777443
No 14
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.32 Score=54.88 Aligned_cols=150 Identities=19% Similarity=0.217 Sum_probs=100.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhh
Q 003266 639 FHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLE 718 (835)
Q Consensus 639 ~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LE 718 (835)
+.++|.....+.....+.|+........||..|+....- + -+.+..+...||+||..|++-|++||.|+++.|||+|
T Consensus 624 lgi~Pe~a~kL~n~~~ds~D~tl~fhalPiash~~~aaf-a--dq~~~~~~d~liS~~~a~l~eisqi~iw~~teeQ~a~ 700 (828)
T KOG4182|consen 624 LGIFPEIAAKLKNHFADSHDITLNFHALPIASHLAHAAF-A--DQDHAASGDELISFSFAPLEEISQIGIWLLTEEQHAE 700 (828)
T ss_pred ccccHHHHHHHHHHHhhccCcchhhhhcchHhhhhhcCC-c--cccchhhhhhhhhhhhcchhhHhhhhhHHhcchhhcc
Confidence 455677777788888888999899999999999875432 1 1122234568999999999999999999999999999
Q ss_pred hhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCC-----C----------------HhHHhhhHhh----
Q 003266 719 PLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYI-----T----------------DHGAQQLSVD---- 773 (835)
Q Consensus 719 p~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~L-----t----------------~~ga~QLa~D---- 773 (835)
|+..=. .|-..++..+.+-....|++.++--..+ | ..||--|-.|
T Consensus 701 PL~nfS----------syPqS~lkqagE~~l~~pqQ~eP~AdgistngdSnnedaqffatewmfkVaEga~aLYmdQi~g 770 (828)
T KOG4182|consen 701 PLLNFS----------SYPQSLLKQAGEVCLIKPQQAEPCADGISTNGDSNNEDAQFFATEWMFKVAEGACALYMDQILG 770 (828)
T ss_pred cccccc----------cccHHHHHHHHHHHhcchhhccchhhcccccccCcchhhhHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 987542 2345566666666666776655432222 1 1222222222
Q ss_pred HHHHH-HHHHHcCCCChhhHHHHHHHhCCC
Q 003266 774 IEYLS-NVLSALSVPIPPALATFHTCLSTP 802 (835)
Q Consensus 774 i~YL~-NVl~aLg~~~~~~L~~~~~ll~~~ 802 (835)
|.|+. .-..-|+|.+ +-|.++...|++|
T Consensus 771 Ik~i~dr~AqQLSVDI-EYLSNVLeaL~lp 799 (828)
T KOG4182|consen 771 IKSIPDRAAQQLSVDI-EYLSNVLEALGLP 799 (828)
T ss_pred ccccCchhhhhhhhhH-HHHHHHHHHhCCC
Confidence 23332 2234566666 7788888888887
No 15
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.46 E-value=0.5 Score=57.04 Aligned_cols=160 Identities=16% Similarity=0.270 Sum_probs=103.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh-HHHHHHHHh
Q 003266 31 SLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS-AESIAALSK 109 (835)
Q Consensus 31 ~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~-~~~~~~L~~ 109 (835)
++...|+.|..++.....++...+++.-.+.... ....+.+......|.+.|..+.+. ..+..+ ........+
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~----~~~~~~L~~~~~~l~~eI~d~l~~--~~~~~i~~~l~~a~~e 84 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPS----LQSAKDLIERSKSLAREINDLLQS--EIENEIQPQLRDAAEE 84 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHh--hccchhHHHHHHHHHH
Confidence 3456666666666666666666666655544444 333444445555555555444333 012222 222233444
Q ss_pred HHHHHHHHH---HHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcc-----cchhHHHHHHHHHHHHH
Q 003266 110 VDTVKQRME---AAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVG-----EVAEFANIRKQLEVLED 181 (835)
Q Consensus 110 LD~vK~rle---~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~-----~~p~~~~r~~~le~l~n 181 (835)
+...|+.+. ....+|+.....+....+++..+++|+|-.+++.|..++..+..+. +..=|...+.++..+++
T Consensus 85 ~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~ 164 (593)
T PF06248_consen 85 LQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRE 164 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHH
Confidence 555555554 5555666666666677788888999999999999999999997752 23346778889999999
Q ss_pred HHHHHhHHHHHHHHh
Q 003266 182 RLDAMVQPRLTDALS 196 (835)
Q Consensus 182 rLEa~v~p~l~~a~~ 196 (835)
+|...+...+..++.
T Consensus 165 ~L~~~L~~~w~~lv~ 179 (593)
T PF06248_consen 165 NLQYQLSEEWERLVQ 179 (593)
T ss_pred HHHHHHHHHHHhhee
Confidence 999999999999887
No 16
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=97.29 E-value=0.038 Score=66.15 Aligned_cols=306 Identities=11% Similarity=0.149 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccc--ccccCCCCCcchh-HHHHHh-hhhHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 003266 404 TFKQRYGQMERAILSSEIAGVDLRGA--VTRGIGAQGIELS-ETVRRM-EESIPQVIVLLEAAVERCISFTGGSEADELI 479 (835)
Q Consensus 404 ~~~~~Y~~~E~~~L~~~l~~l~~~~~--~~~~~~~~~~~~~-d~~~~l-~~s~~~lf~~~~~Av~RC~~lT~g~~~~~l~ 479 (835)
.+...|.+...+.+.+=+..+.-... +.+ +.+.+ +..+.. .+....+|.++.+-++.-..=-++.-+..++
T Consensus 203 ~L~~~Yl~~~~~~~~eW~~n~l~~E~~~w~~-----~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~ 277 (566)
T PF06046_consen 203 ELEDDYLSRIQKKMKEWMDNILEQEVKDWSE-----EKEPEEDEDGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVL 277 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44456777776666665554422100 000 01111 222333 4456888888888887663322333366677
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhhcCCCCCCCCccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 003266 480 LALDDIMLQYISTLQELLK-SLRAVCGVDHDGVGSKKEVGFDKKEGVSNARKADISSEEEWSIVQGALQILTVADCLTSR 558 (835)
Q Consensus 480 ~al~~~l~~y~~~~~~~l~-~lr~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~edW~~~q~al~lL~~~~~l~~~ 558 (835)
..+..++..|-..+...+. ..+..+...+ .+ .. =......+.++|.|-.|..-
T Consensus 278 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~----------------~~-~~~~eyliA~~N~~~~~~~~ 331 (566)
T PF06046_consen 278 EELANFLKSYQDAWQEFKEEHFKDRSSVKP---------KE----------------NP-PGYLEYLIAVANNCLRCRDY 331 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------CC-------------------S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc---------cc----------------cc-cchHHHHHHHhccHHHHHHH
Confidence 7776677777666665542 2332221000 00 00 02667788888888888876
Q ss_pred HHHHHHHHHHHHHHhhhhccccccCCCchhhhccccccCCCCCcccccchhhhHHHHhhhcCHHHHHHHHHHHhhcCCCC
Q 003266 559 SSVFEASLRATLARLSTSLSLSVFGSSLDQKQSQSANVDGHGELSVGGRAALDVAAVRLIDVPEKARKLFNLLDQSKDPR 638 (835)
Q Consensus 559 ~~~~E~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~l~~ll~~~~~~~ 638 (835)
+.+++..+...+..... ..+..-+
T Consensus 332 ~~~l~~~~~~~~~~~~~-------------------------------------------------~~~~~~~------- 355 (566)
T PF06046_consen 332 VESLEQKFEEKVSQKYM-------------------------------------------------ERISSDL------- 355 (566)
T ss_dssp HHHHHHHHHTTS-HHHH-------------------------------------------------HHHHHHH-------
T ss_pred HHHHHHhcccccchHHH-------------------------------------------------hhhhhhH-------
Confidence 66666654322110000 0111111
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhh
Q 003266 639 FHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLE 718 (835)
Q Consensus 639 ~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LE 718 (835)
+.+...+..+...|...+.+.+|.=++.+++.+-+ +.|-..+ .-..-+.-|.+|+-.+=++|.
T Consensus 356 ----~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft-~~W~~~~------------~~~~I~~Ti~dY~~d~~~~l~ 418 (566)
T PF06046_consen 356 ----EELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFT-KKWYSGE------------AVDTICATIEDYLQDFQHYLR 418 (566)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTS-GGGCTS-------------HHHHHHHHHHHHHHHHCCCS-
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCc-CcCcCcc------------hHHHHHHHHHHHHHHHHHhcc
Confidence 11235677778888888888888888889998887 7895421 112233444555533333233
Q ss_pred hhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhcc--c----cCCCHhHHhhhHhhHHHHHHHHHHcC------C
Q 003266 719 PLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRG--I----QYITDHGAQQLSVDIEYLSNVLSALS------V 786 (835)
Q Consensus 719 p~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~--I----~~Lt~~ga~QLa~Di~YL~NVl~aLg------~ 786 (835)
| .+....+..+...++..|+..+.+ | ..-.+.++.|+..|++-|.+.+..++ -
T Consensus 419 ~---------------~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~~~~~~~~ 483 (566)
T PF06046_consen 419 P---------------PYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLGSKSEVKS 483 (566)
T ss_dssp H---------------HHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred c---------------cHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 2 577888999999999999998887 2 23478899999999999999999999 3
Q ss_pred CChhhHHHHHHHh-CCCcH----HHHHHhhhcCCCCCChhHHHHHHHHhc
Q 003266 787 PIPPALATFHTCL-STPRD----QLKDLLKSDSGNQLDLPTANLVCKIRR 831 (835)
Q Consensus 787 ~~~~~L~~~~~ll-~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~mR~ 831 (835)
.. ..|..+..++ -.+++ +|..+...-+. ++...+.+|-++||
T Consensus 484 ~~-~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD--~~~~~v~alL~~R~ 530 (566)
T PF06046_consen 484 SF-DVLEDLLELLRLEDPEMIKLEVSSLLQKYPD--ISEEHVEALLALRG 530 (566)
T ss_dssp HH-HHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT----SHHHHHHHCT-T
T ss_pred hH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CCHHHHHHHHHhcc
Confidence 33 6778888888 33444 34444443322 77788999999998
No 17
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=96.59 E-value=0.03 Score=49.55 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 003266 8 FSDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVS 87 (835)
Q Consensus 8 F~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~ 87 (835)
|++++|||..|+++.+.... ...+..+..+|...+.+...+|...+-.=-+..=.+..+|..|+.++..|+..|.
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s-----~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~ 75 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSS-----IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLS 75 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998877 3478889999999999999999888865555555558889999999999999888
Q ss_pred HHHHHHHhhh
Q 003266 88 GILQKLKKAE 97 (835)
Q Consensus 88 ~i~~~~~~~e 97 (835)
.+...+.++.
T Consensus 76 ~l~~~~~~l~ 85 (87)
T PF08700_consen 76 ELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHhh
Confidence 8887776553
No 18
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=2.8 Score=50.75 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=111.3
Q ss_pred CCCCCHHHHHhhhcCCCCC-C----cc-----hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q 003266 10 DEKFDPKKWINSACQTRHS-Q----DS-----LD-NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDD 78 (835)
Q Consensus 10 ~~~FD~~~wIN~~~~~~~~-~----~~-----ld-~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~e 78 (835)
+.+-|...|....+....+ + +| ++ ....+++-+|...+..-..+||+.++.-.+.--.++-|+-.+|.+
T Consensus 9 ~~s~d~~~~~eril~~~estDtd~~gP~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~d 88 (800)
T KOG2176|consen 9 TASLDTAEEHERILLEIESTDTDDWGPTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGD 88 (800)
T ss_pred cCCCcchHHHHHHHHHHhccchhhhhhHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4456777777766554322 1 11 22 355677889999999999999999987777777779999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHH
Q 003266 79 AISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRH 158 (835)
Q Consensus 79 a~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~ 158 (835)
|..|+.+|.....+++++-.+.-....+|.+.-.+++++..|+..++--..--.+.+...+.+++|+|=.+-..+..+.+
T Consensus 89 aq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~ 168 (800)
T KOG2176|consen 89 AQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEK 168 (800)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999988887766667799999999999999999998633333445677777777765555555555443
No 19
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.8 Score=55.71 Aligned_cols=201 Identities=15% Similarity=0.180 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHH
Q 003266 37 VDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQR 116 (835)
Q Consensus 37 ~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~r 116 (835)
..|-.||.-|-.=+.--|-+.+..-.-+-+-++..+..++.++..=.+.+..+++++++++.+.-.-...|.++...+.+
T Consensus 242 ~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n 321 (951)
T KOG2115|consen 242 SALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKN 321 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444555555444444444455555577888899999999998888899999999999998766667789999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003266 117 MEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLS--AVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDA 194 (835)
Q Consensus 117 le~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~--~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a 194 (835)
++...+-|+.+....+-...|..+++++||..+-+-+...+..|+ .+.+++-|...+.++-.+...+-.++-.+|...
T Consensus 322 ~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF~~~ 401 (951)
T KOG2115|consen 322 VEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREFSTY 401 (951)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888999999999999999999999999996 789999999999999999999999999999887
Q ss_pred Hhc----CCHH---------HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 003266 195 LSN----RKID---------IARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEE 237 (835)
Q Consensus 195 ~~~----~~~~---------~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~ 237 (835)
... ..+. .-..++..+......+.|...|...--.-.+.+...
T Consensus 402 ~~~Dlg~~~~~~ls~~lee~~L~~~vlgllr~~klpsf~~~~~d~l~~~~k~iikq 457 (951)
T KOG2115|consen 402 SKSDLGRKLTLQLSILLEEDRLSSLVLGLLRTRKLPSFLEGYRDKLIETFKNIIKQ 457 (951)
T ss_pred HHHHhCCCchHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 753 1111 223345555556666777787776655555555443
No 20
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=96.40 E-value=1.1 Score=50.09 Aligned_cols=110 Identities=13% Similarity=0.152 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 003266 176 LEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEEFESRQRSSKIANEKNEVE 255 (835)
Q Consensus 176 le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~~~~~~~~~~~~~~~~~~ 255 (835)
|+..+++|...+..+|.+|..++|.++.-.|.++|--||+.+.=.+.|++--...+...=+........ ....
T Consensus 1 L~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~------~~~~- 73 (331)
T PF08318_consen 1 LDEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATS------GSSD- 73 (331)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cccc-
Confidence 456789999999999999999999999999999999999999999999887666664444333222110 0000
Q ss_pred hcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCch
Q 003266 256 RISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDY 302 (835)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~ 302 (835)
.. ...-|+.-|..+|+.+-..+++....+...|+..+
T Consensus 74 ~~----------~~~~~~~~lt~LFe~ia~ii~~h~~lI~~~yG~~~ 110 (331)
T PF08318_consen 74 SR----------SPVFYADALTKLFEHIATIIEQHQPLIEKYYGPGY 110 (331)
T ss_pred cc----------ccccHHHHHHHHHHHHHHHHHHccHHHHHHcCCcH
Confidence 11 12367888899999999999999999999998765
No 21
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=96.38 E-value=3.7 Score=49.84 Aligned_cols=263 Identities=15% Similarity=0.163 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 003266 49 EISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAA 128 (835)
Q Consensus 49 ~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~ 128 (835)
++...+-....+.++.-..+.+.+++++..+..|.+.-..+.+.+......+...+.....|..-|+.++.=...|..--
T Consensus 24 ~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~ 103 (618)
T PF06419_consen 24 DIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFL 103 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556777777777888888999999999988899888888888888888888877777777776666666421
Q ss_pred hhhhhHHHHHHHhhcC------CHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH-------hHHHHHHHH
Q 003266 129 GLTQLSLTVEDVFASG------DLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAM-------VQPRLTDAL 195 (835)
Q Consensus 129 ~w~~l~~~ve~l~~~~------~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~-------v~p~l~~a~ 195 (835)
.==+|...=...+.+| .+=.+-.|+..++.....+-.++.......-|+..-.-+|+. +...|..-
T Consensus 104 ~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l- 182 (618)
T PF06419_consen 104 ERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSL- 182 (618)
T ss_pred HhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 1112333333334444 388899999999999998877775544444444444333333 33333322
Q ss_pred hcCCHHH---HHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc-CCCcccccCCcch
Q 003266 196 SNRKIDI---ARDLRGILIR-IGRFKSLELHYTKVHLKYIKQLWEEFESRQRSSKIANEKNEVERI-SSNNEFQSSAPSV 270 (835)
Q Consensus 196 ~~~~~~~---~~~~~~il~~-i~R~~~l~~~Y~~~~~~~l~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 270 (835)
+..+.+. .+.++..|.. -.-...+...|+..|.+.+.+.|-.....+++ +|.. -|- ..++ +.+.
T Consensus 183 ~~~~~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~---------~~~~~rPI-el~A-hDP~ 251 (618)
T PF06419_consen 183 NLDNPEVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDALTRGGP---------GGSPSRPI-ELHA-HDPL 251 (618)
T ss_pred hhcCcccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---------CCCCCCch-hhhc-cChH
Confidence 1222222 2233333322 23356677788899999999988665443321 1111 111 0111 1112
Q ss_pred hhhhhhHHHHHHHHHHHH----HHHHHHhhhcCCchh-----------------chHHHHHHHHHHhhhccHHHHHhhhh
Q 003266 271 MFSSWLPSFYDELLLYLE----QEWKWCMVAFPDDYR-----------------TLVPKLLVETMASVGGSFVSRINLAT 329 (835)
Q Consensus 271 ~~~~~L~~fy~~lL~~l~----~E~~w~~~vFp~~~~-----------------~l~~~ll~~~~~~l~~si~~~l~~~~ 329 (835)
+ |..++|..+| .|...+..+|..... ..+..++-.++..+..++..|+++++
T Consensus 252 R-------YvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~rplk~RvEQvi 324 (618)
T PF06419_consen 252 R-------YVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCRPLKIRVEQVI 324 (618)
T ss_pred H-------HHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2 5556666555 588999999954321 35577999999999999999999876
Q ss_pred C
Q 003266 330 G 330 (835)
Q Consensus 330 ~ 330 (835)
.
T Consensus 325 ~ 325 (618)
T PF06419_consen 325 S 325 (618)
T ss_pred H
Confidence 3
No 22
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=96.19 E-value=1.3 Score=49.39 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 003266 176 LEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEEFESRQRSSKIANEKNEVE 255 (835)
Q Consensus 176 le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~~~~~~~~~~~~~~~~~~ 255 (835)
|+.-+++|...+..+|..|..++|.++...|.++|--||+...=...|.+.-..-+...=+.....-.. +
T Consensus 1 L~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~~Ia~~ar~~~~~~~~---------~- 70 (324)
T smart00762 1 LDEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSLLNELAG---------A- 70 (324)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHHHHHHHHHHHhhcccc---------c-
Confidence 356788999999999999999999999999999999999988877777765544342221222111000 0
Q ss_pred hcCCCcccccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCch
Q 003266 256 RISSNNEFQSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPDDY 302 (835)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~ 302 (835)
..++ ...-.|..-|..+|+.+-..+++....+...|+...
T Consensus 71 ~~~~-------~~~~~~a~~lt~Lfe~ia~ii~~h~~~I~~~yG~~~ 110 (324)
T smart00762 71 SDDT-------RAAVFYADTLTHLFENVATIIEQHQPVIEKYYGPDG 110 (324)
T ss_pred cccc-------cccchHHHHHHHHHHHHHHHHHhccHHHHHHcCchh
Confidence 0000 112357778889999999999988888888886443
No 23
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=95.92 E-value=0.0057 Score=58.94 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhchhHHHHHHH
Q 003266 3 LDLGPFSDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALL-------RVPRATRDVVRL 75 (835)
Q Consensus 3 ~dls~F~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~-------~~Pr~~~dve~~ 75 (835)
+|-+.|..++|||..||.+ +....+ +.+|..-|..+.+.++++|-+.++.-.. .+......++.+
T Consensus 3 f~~~~F~~~~Fd~d~Fl~~-~~~~~~-------Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l 74 (133)
T PF06148_consen 3 FDKEEFTKPDFDVDEFLSS-NRRYVS-------LEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEEL 74 (133)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred ccccccCCCCCCHHHHHHH-ccCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHH
Confidence 5678899999999999998 444443 4466666777777777777777764332 222223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHH
Q 003266 76 RDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVK 114 (835)
Q Consensus 76 ~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK 114 (835)
+..+..++.++..+++++......+...+...+.+...|
T Consensus 75 ~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 75 RKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp HHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444443444444444444444
No 24
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.48 Score=53.86 Aligned_cols=200 Identities=14% Similarity=0.138 Sum_probs=127.0
Q ss_pred CCCCCCCCCCCCCHHHHHhhhcCCCCC------CcchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhchhHHHHHH
Q 003266 2 MLDLGPFSDEKFDPKKWINSACQTRHS------QDSLDNHLVDLEMKLQMVS-EEISASLEEQSASALLRVPRATRDVVR 74 (835)
Q Consensus 2 ~~dls~F~~~~FD~~~wIN~~~~~~~~------~~~ld~~i~~l~~kLq~~~-~~l~~~le~~~~~~l~~~Pr~~~dve~ 74 (835)
|.|.-+..+.+|||..|+....+..+= ...+-..|..|=+-+|.+. +.-|.-+..+ .++-+..-+.-.
T Consensus 22 plsptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisAT-----dTirkmk~~f~~ 96 (636)
T KOG2346|consen 22 PLSPTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISAT-----DTIRKMKSNFFG 96 (636)
T ss_pred CCCccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcc-----hHHHHHHhhhhh
Confidence 567777888999999999877665431 1222234444444444332 1122222211 223333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHH
Q 003266 75 LRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLA 154 (835)
Q Consensus 75 ~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~ 154 (835)
|.+++.+|.+.|..|+..+..+.....+-=..|.+|.+...++-....... +-..+...++.+.|.++.+--.
T Consensus 97 me~eMd~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifd-------LP~rLrkc~~~~aYG~avR~~~ 169 (636)
T KOG2346|consen 97 MEQEMDGLEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFD-------LPRRLRKCGRAPAYGAAVRGSS 169 (636)
T ss_pred hcchhhhHHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhh-------hHHHHHHhccccccchhhcccc
Confidence 777888888888888777776665544434456666665555544433332 3456777788899999998888
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003266 155 NMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGR 215 (835)
Q Consensus 155 ~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R 215 (835)
...-.+..+++.|.+.+-...=|....++++.+..++..-.. ....-.+++..+..+++
T Consensus 170 ~A~~~L~qY~~~psfq~~~~~seei~~rl~~qL~~rlr~~~s--ga~~raEAv~LLl~lg~ 228 (636)
T KOG2346|consen 170 EATGKLRQYDGRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSS--GAQARAEAVVLLLQLGV 228 (636)
T ss_pred ccccchhhcCCCCcHHHhccchHHHHHHHHHHHHHHhccCCC--CchhHHHHHHHHHhcCC
Confidence 888999999999999988888788888888877666543221 12334456777777776
No 25
>PF15469 Sec5: Exocyst complex component Sec5
Probab=92.96 E-value=11 Score=38.14 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=83.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVG-EVAEFANIRKQLEVLE 180 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~-~~p~~~~r~~~le~l~ 180 (835)
.....|-.-..--.++..++..|++-..+=.|-..|...++.|+|..+..-....+..+.-.. +++-+...+..+|..-
T Consensus 58 ~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii 137 (182)
T PF15469_consen 58 SVFKPLLERREKADKLRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKII 137 (182)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 334444444444455666777777766666677899999999999999999999988887776 7777777777777777
Q ss_pred HHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHH
Q 003266 181 DRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELH 222 (835)
Q Consensus 181 nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~ 222 (835)
+.+...+...|.+.- .+.+.-..++..|..++=.+.=..+
T Consensus 138 ~~~r~~l~~~L~~~~--~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 138 EEFREKLWEKLLSPP--SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred HHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 777776666665543 4566667788888777554433333
No 26
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=91.72 E-value=26 Score=39.24 Aligned_cols=143 Identities=17% Similarity=0.217 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHH
Q 003266 72 VVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAE 151 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~ 151 (835)
+..+...+..|..++..+.+....+......+....+....+..+.+.-.+.|. ..+|+ +.....|.|.++-+
T Consensus 55 ~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~~l~~~~~l~diLE----lP~Lm---~~ci~~g~y~eALe 127 (338)
T PF04124_consen 55 LSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASLLLENHDRLLDILE----LPQLM---DTCIRNGNYSEALE 127 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHH---HHHHhcccHhhHHH
Confidence 333444444444444444444444444444444445555555555555555554 44444 46678899999999
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHH-----HHHHHHHH
Q 003266 152 TLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKS-----LELHYTKV 226 (835)
Q Consensus 152 ~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~-----l~~~Y~~~ 226 (835)
-..-+++...-+.+.|-+.....+++..- ..++ ..|+.-++ .+.. ...|+++++=..|.+. ++..|-.+
T Consensus 128 l~~~~~~L~~~~~~~~lv~~i~~ev~~~~---~~ml-~~Li~~L~-~~l~-l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~ 201 (338)
T PF04124_consen 128 LSAHVRRLQSRFPNIPLVKSIAQEVEAAL---QQML-SQLINQLR-TPLK-LPACIKTVGYLRRLPVLTESELRLKFLQS 201 (338)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHH---HHHH-HHHHHHHc-Cccc-HHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999998888888888877777666533 3333 33444453 3333 2224444444444433 44444444
Q ss_pred H
Q 003266 227 H 227 (835)
Q Consensus 227 ~ 227 (835)
|
T Consensus 202 r 202 (338)
T PF04124_consen 202 R 202 (338)
T ss_pred H
Confidence 3
No 27
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.32 E-value=16 Score=46.06 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh-------HHH--
Q 003266 35 HLVDLEMKLQMVSEEISAS--LEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS-------AES-- 103 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~--le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~-------~~~-- 103 (835)
.|..|..+++.....|++- |-..+..-+.+.-.+..+.++.+..+..++.++..|++.+++.+..- ..+
T Consensus 1512 qi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~ 1591 (1758)
T KOG0994|consen 1512 QIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADR 1591 (1758)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5555555555544333321 11112333344445555666777888888888888888776655321 111
Q ss_pred -HH-HHHhHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHH
Q 003266 104 -IA-ALSKVDTVKQRMEAAYETLQDA-AGLTQLSLTVEDV 140 (835)
Q Consensus 104 -~~-~L~~LD~vK~rle~a~~~L~eA-~~w~~l~~~ve~l 140 (835)
++ .=+.|++|+.++.++-..+.-| +....|...+++|
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2345777777777777666644 3444455555554
No 28
>PF14923 CCDC142: Coiled-coil protein 142
Probab=87.67 E-value=13 Score=42.87 Aligned_cols=112 Identities=20% Similarity=0.348 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccCC-
Q 003266 647 QRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGIS- 725 (835)
Q Consensus 647 ~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~~- 725 (835)
..+..|++.|+...-+.. + ..||+-.-|+.... .++| ..|++|+..+.+.+ |+|......
T Consensus 235 e~~~~f~~~C~~~s~~~f------~-~~mP~g~~WR~~~~---~~lP---~~pS~Yv~~~v~~v------l~PVl~g~q~ 295 (450)
T PF14923_consen 235 ECLRLFSQDCRKMSLAIF------E-LCMPSGRYWRRSLS---PELP---SAPSEYVEYVVETV------LEPVLQGVQG 295 (450)
T ss_pred HHHHHHHHHHHHHHHHHH------H-HhCCCcchhcccCC---CCCC---CCccHHHHHHHHHH------HHHHHHHhcC
Confidence 567777888875444433 1 23798889987553 2344 57999999888765 456554421
Q ss_pred CCCCch------hhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHHHHHHHH--cCCCC
Q 003266 726 TSDNND------EAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVLSA--LSVPI 788 (835)
Q Consensus 726 ~~~~~~------e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL~NVl~a--Lg~~~ 788 (835)
-+++.+ -...|...||+- -|++. ...|..||.||-.|++|..+.+.. =|+++
T Consensus 296 L~~~aq~~~l~~~l~a~~eAWLdh-------Il~~k----IKFS~~GAlQL~~DF~~Vr~wl~~e~~~Ls~ 355 (450)
T PF14923_consen 296 LPPEAQIPALSQALTAMLEAWLDH-------ILMHK----IKFSLQGALQLRQDFGYVRDWLESECSGLSP 355 (450)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHH-------HHHcc----ceeeHHHHHHHHHHHHHHHHHHHhhhccCCH
Confidence 111111 113355667663 34442 368999999999999999999998 55554
No 29
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=77 Score=38.08 Aligned_cols=131 Identities=13% Similarity=0.177 Sum_probs=88.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh-------HHHHHHHHhHHHHHHHHHHHHH---HH
Q 003266 55 EEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS-------AESIAALSKVDTVKQRMEAAYE---TL 124 (835)
Q Consensus 55 e~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~-------~~~~~~L~~LD~vK~rle~a~~---~L 124 (835)
|....+++..+--+..+++.|......-.+.|..|++++++.+..- .+-.+-+++|+.+=.||+-+.. +|
T Consensus 217 E~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~aL 296 (867)
T KOG2148|consen 217 EPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIAAL 296 (867)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHHhc
Confidence 4556788888888899999999999999999999999999888642 1335568888888888875443 23
Q ss_pred HHhhhhhhhHHHHHHHhhc--CCHHHHHHHHHHHHHHHhhcccc-----hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 003266 125 QDAAGLTQLSLTVEDVFAS--GDLPRAAETLANMRHCLSAVGEV-----AEFANIRKQLEVLEDRLDAMVQPRLTDALSN 197 (835)
Q Consensus 125 ~eA~~w~~l~~~ve~l~~~--~~~~~ia~~L~~~~~sl~~l~~~-----p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~ 197 (835)
++++ |++ +++..+...-.++++++..=-+- --+.+++..++++++.+-+.++.-+...|.+
T Consensus 297 ~egd------------f~~a~~~ieact~aA~al~q~~~~~ldp~~l~m~Avkdqr~eleklk~~FvrrlssfLnnlF~~ 364 (867)
T KOG2148|consen 297 TEGD------------FDEADQGIEACTWAAKALRQLMNPNLDPIYLNMRAVKDQRAELEKLKATFVRRLSSFLNNLFAS 364 (867)
T ss_pred ccCC------------ccccchhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 111 23333333334445554322221 1456788999999999988888888877764
No 30
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=87.00 E-value=18 Score=38.36 Aligned_cols=149 Identities=15% Similarity=0.241 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccC
Q 003266 648 RVAAFADAVNELVYDVLISKV---RQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGI 724 (835)
Q Consensus 648 ~~~~l~~~~~~~~~d~i~~pi---~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~ 724 (835)
..-..+.+....+|..+.+.+ ..-+..|++ .-|.-.+ ...-++.||-.+.+.+-..=..|+-.....
T Consensus 46 ~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~-vKWdvke---------v~~qhs~YVd~l~~~~~~f~~rL~~i~~~~ 115 (234)
T PF10474_consen 46 QTVSAVPDLREPIYKCVASRLLDLEQILNSIAN-VKWDVKE---------VMSQHSSYVDQLVQEFQQFSERLDEISKQG 115 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-cCCCCCC---------CCCccCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334456677777777766553 233344555 3675433 245678899999999998888887665331
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHHHHHHHHcCC-CChhhHHHHHHHhC---
Q 003266 725 STSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVLSALSV-PIPPALATFHTCLS--- 800 (835)
Q Consensus 725 ~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL~NVl~aLg~-~~~~~L~~~~~ll~--- 800 (835)
+- +.+.-....+.+++.++..+++...+|+.+|..|.+++.-|+.-|.+-++.+.= .|.|..+.+...++
T Consensus 116 ~i------~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~~Ve~YIKAyY 189 (234)
T PF10474_consen 116 PI------PPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNREYVENYIKAYY 189 (234)
T ss_pred CC------CHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHc
Confidence 11 123445566778888899999999999999999999999999999998887754 35567776666666
Q ss_pred CCcHHHHHHhhh
Q 003266 801 TPRDQLKDLLKS 812 (835)
Q Consensus 801 ~~~~~~~~~~~~ 812 (835)
.|.+++.+-+++
T Consensus 190 l~e~e~~~W~~~ 201 (234)
T PF10474_consen 190 LPEEELEEWIRT 201 (234)
T ss_pred CCHHHHHHHHHh
Confidence 478888888876
No 31
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.59 E-value=34 Score=42.16 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=67.8
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHh-hcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 003266 119 AAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLS-AVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSN 197 (835)
Q Consensus 119 ~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~-~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~ 197 (835)
..++.|.+-++..++-..|+++.....|-.++..|.+...+|. .|..|...++.+..++.++..|+-.+...++.-+=-
T Consensus 131 ~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VEgLs~l~~ele~~~~~L~~~L~eELv~ily~ 210 (982)
T KOG3691|consen 131 KVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVEGLSDLRSELEGLLSHLEDILIEELVSILYL 210 (982)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666677777889999999999999999999999994 688999999999999999999999999999876643
Q ss_pred C
Q 003266 198 R 198 (835)
Q Consensus 198 ~ 198 (835)
.
T Consensus 211 k 211 (982)
T KOG3691|consen 211 K 211 (982)
T ss_pred c
Confidence 3
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.07 E-value=73 Score=40.58 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 003266 104 IAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFA 142 (835)
Q Consensus 104 ~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~ 142 (835)
....++.+.+|.+.+.|.+.++..+.. ...++.|+.
T Consensus 1643 ~~a~~~a~sa~~~A~~a~q~~~~lq~~---~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1643 KQAEKTAGSAKEQALSAEQGLEILQKY---YELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 334666777777777777777754333 344444443
No 33
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.35 E-value=86 Score=38.20 Aligned_cols=217 Identities=17% Similarity=0.226 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCCCcccccCCcchhhhhhhHHHH
Q 003266 201 DIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEEFESRQRSSKIANEKNEVERISSNNEFQSSAPSVMFSSWLPSFY 280 (835)
Q Consensus 201 ~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~fy 280 (835)
..-+..++.+..-|...+|.+.|...|+.-+.+--..+.-...+ ......++ .. ........|+...-
T Consensus 193 ~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls------~~~vq~~~-we-----~le~~I~~Wi~~~k 260 (623)
T KOG2344|consen 193 TDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLS------IEDVQRMD-WE-----VLEGKIKKWIKAVK 260 (623)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeecc------HHHHhhcc-HH-----HHHHHHHHHHHHHH
Confidence 34455677777889999999999999988776655522110000 00000110 00 01225677888888
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhchHHHHHHHHHHhhhccHHHHHhhhhCCCCchhhhhhhhhhhhccCCCCccchhhhh
Q 003266 281 DELLLYLEQEWKWCMVAFPDDYRTLVPKLLVETMASVGGSFVSRINLATGDFVPETKALSKGILDILSGDMPKGIKLQTK 360 (835)
Q Consensus 281 ~~lL~~l~~E~~w~~~vFp~~~~~l~~~ll~~~~~~l~~si~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (835)
..+...+..|..-|.+||++-..... .+|..++..- -+ .+++ .|+ .++. .+.+.+
T Consensus 261 v~v~~lf~~E~~Lcd~If~~~~~~~~-----~cF~eI~~~~--~~-~ll~--F~e--ava~-------------~kr~pE 315 (623)
T KOG2344|consen 261 VAVSVLFEGEKKLCDQIFSDLESIVE-----SCFPEIVKEA--AL-QLLS--FPE--AVAI-------------SKRSPE 315 (623)
T ss_pred HHHHHHhHHHHHHHHHHcCccchHHH-----HHHHHHHHHH--HH-Hhhc--cch--heee-------------ccCCHH
Confidence 88888899999999999987543211 3333332211 11 1111 111 0111 133456
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcc
Q 003266 361 HLEALIDLHNMTGTFARNIQHLFSESDLQVLLDTLKAVYFPYDTFKQRYGQMERAILSSEIAGVDLRGAVTRGIGAQGIE 440 (835)
Q Consensus 361 ~l~~Ll~~~~~t~~F~~~l~~~~~~~~~~~~~~l~~~i~~PF~~~~~~Y~~~E~~~L~~~l~~l~~~~~~~~~~~~~~~~ 440 (835)
++..++++|.+...+-..++.+|+...... +. ..
T Consensus 316 klf~iLd~y~~i~~l~p~ie~lF~~~~~s~--------------------------vr--------------------~~ 349 (623)
T KOG2344|consen 316 KLFKLLDLYETIVELRPDIERLFSDASCSE--------------------------VR--------------------SQ 349 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCHH--------------------------HH--------------------HH
Confidence 888899999888888888877765321110 00 01
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 441 LSETVRRMEESIPQVIVLLEAAVERCISFT--GGSEADELILALDDIMLQYISTLQELLKSLR 501 (835)
Q Consensus 441 ~~d~~~~l~~s~~~lf~~~~~Av~RC~~lT--~g~~~~~l~~al~~~l~~y~~~~~~~l~~lr 501 (835)
+.....+|.+.+..+|.=++.+|.+=..-| +|-++..|..-+-.++. |+..|+.+|.++=
T Consensus 350 ~~~~~~rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~-~L~dy~~tL~~il 411 (623)
T KOG2344|consen 350 ALSLLKRLGEGVRSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLN-FLADYKDTLEQLL 411 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 111123445555555555566655544333 55677777777766665 4447777776653
No 34
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=82.08 E-value=50 Score=32.16 Aligned_cols=25 Identities=8% Similarity=0.228 Sum_probs=13.8
Q ss_pred HHHHHHhhc-CCHHHHHHHHHHHHHH
Q 003266 135 LTVEDVFAS-GDLPRAAETLANMRHC 159 (835)
Q Consensus 135 ~~ve~l~~~-~~~~~ia~~L~~~~~s 159 (835)
.++.+|... ..|..+.+.|..|...
T Consensus 107 ~eL~~L~~~s~~~~~mi~iL~~Ie~l 132 (142)
T PF04048_consen 107 EELKELWQRSQEYKEMIEILDQIEEL 132 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555333 3466666666666655
No 35
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.03 E-value=79 Score=34.10 Aligned_cols=84 Identities=11% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHH-HHHHHHHHHHHHHHHhhhhhhhHH-HHHHHhhcCCHH
Q 003266 70 RDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVD-TVKQRMEAAYETLQDAAGLTQLSL-TVEDVFASGDLP 147 (835)
Q Consensus 70 ~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD-~vK~rle~a~~~L~eA~~w~~l~~-~ve~l~~~~~~~ 147 (835)
.+++.+...+..++.++...+.++.+++..+...-.+|.... ..+.|+.+.. -+.-.. =|+-+|.+.++-
T Consensus 59 ~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq--------~nG~~t~Yidvil~SkSfs 130 (265)
T COG3883 59 NQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ--------VNGTATSYIDVILNSKSFS 130 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCChhHHHHHHHccCcHH
Confidence 334444444444444444444444444444333333333332 2344443322 222222 389999999999
Q ss_pred HHHHHHHHHHHHHh
Q 003266 148 RAAETLANMRHCLS 161 (835)
Q Consensus 148 ~ia~~L~~~~~sl~ 161 (835)
++..|+.+|..-..
T Consensus 131 D~IsRvtAi~~iv~ 144 (265)
T COG3883 131 DLISRVTAISVIVD 144 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998874
No 36
>PRK11637 AmiB activator; Provisional
Probab=81.35 E-value=99 Score=35.78 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=9.5
Q ss_pred HHHHHhhcCCHHHHHH
Q 003266 136 TVEDVFASGDLPRAAE 151 (835)
Q Consensus 136 ~ve~l~~~~~~~~ia~ 151 (835)
-++-++...+...+.+
T Consensus 141 ~l~vLl~a~~~~~~~r 156 (428)
T PRK11637 141 GLQLILSGEESQRGER 156 (428)
T ss_pred HHHHHhcCCChhHHHH
Confidence 3566677776655553
No 37
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=79.57 E-value=70 Score=31.89 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 003266 222 HYTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 222 ~Y~~~~~~~l~~~W~~~~~ 240 (835)
-++......+...|..+..
T Consensus 182 ~~~~~~l~~l~~~~~~l~~ 200 (213)
T cd00176 182 EEIEEKLEELNERWEELLE 200 (213)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5567778888888888654
No 38
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.22 E-value=1.6e+02 Score=35.90 Aligned_cols=203 Identities=17% Similarity=0.244 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cC
Q 003266 33 DNHLVDLEMKLQMVSEEISASLEEQS----------ASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAE---GS 99 (835)
Q Consensus 33 d~~i~~l~~kLq~~~~~l~~~le~~~----------~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e---~~ 99 (835)
|..++.+...++.+-..+...+.... .++-.++-.+..++..++.-+..=...+..|-++|++++ .+
T Consensus 39 d~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkN 118 (793)
T KOG2180|consen 39 DSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKN 118 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhh
Confidence 44555555555555555555444432 333444444455555666666666677788888888877 34
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHH-----HHhhhhhhhHHHHHHHhhc-CC---HHHHHHHHHHHHHHHh--h------
Q 003266 100 SAESIAALSKVDTVKQRMEAAYETL-----QDAAGLTQLSLTVEDVFAS-GD---LPRAAETLANMRHCLS--A------ 162 (835)
Q Consensus 100 ~~~~~~~L~~LD~vK~rle~a~~~L-----~eA~~w~~l~~~ve~l~~~-~~---~~~ia~~L~~~~~sl~--~------ 162 (835)
...+|..|.+|+-.=.-.+.+...+ +|+...-...-+|-+.|.. .+ ++...++|..+++++. +
T Consensus 119 LTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~ 198 (793)
T KOG2180|consen 119 LTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKA 198 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777766554444433332 2222222222334344444 44 5555566666777762 2
Q ss_pred -cccchh--HHHHHHHHHHHH---HHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHh---ccchHHH--HHHHHHHHHHHH
Q 003266 163 -VGEVAE--FANIRKQLEVLE---DRLDAMVQPRLTDALSNRKIDIARDLRGILIR---IGRFKSL--ELHYTKVHLKYI 231 (835)
Q Consensus 163 -l~~~p~--~~~r~~~le~l~---nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~---i~R~~~l--~~~Y~~~~~~~l 231 (835)
|.+-+. -.-..+.+...| +-||-.+..+++.-|-++..+. |..||.. .+-.+.+ +=.|.+.+...+
T Consensus 199 ~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~e---y~~IF~en~E~a~LDkidrRY~wfKr~L~~f 275 (793)
T KOG2180|consen 199 AFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEE---YEQIFRENEEAASLDKLDRRYAWFKRLLRDF 275 (793)
T ss_pred hcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHH---HHHHHhccHhhhhhhhHHHHHHHHHHHHHHH
Confidence 222222 111122222222 3456667777777776555544 3344433 2222222 334567778888
Q ss_pred HHHHHHh
Q 003266 232 KQLWEEF 238 (835)
Q Consensus 232 ~~~W~~~ 238 (835)
.+.|..+
T Consensus 276 e~k~~~i 282 (793)
T KOG2180|consen 276 EEKWKPI 282 (793)
T ss_pred HHhcccc
Confidence 8888753
No 39
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.35 E-value=1.1e+02 Score=37.56 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHH--HHhHHHHHHHHHHHHHHHHHh-
Q 003266 51 SASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAA--LSKVDTVKQRMEAAYETLQDA- 127 (835)
Q Consensus 51 ~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~--L~~LD~vK~rle~a~~~L~eA- 127 (835)
+..|++...|.----.++.+|+..-..-+..|++.+...++....+.+++.++.+- ++-....++.+. -+..|.||
T Consensus 265 ak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkad-irc~LlEar 343 (1265)
T KOG0976|consen 265 AKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKAD-IRCALLEAR 343 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34444554444444444555555555555555555555555555555555444432 222222222221 12233333
Q ss_pred hhhhhhHHHHHHHhhc-----CCHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 003266 128 AGLTQLSLTVEDVFAS-----GDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRL 183 (835)
Q Consensus 128 ~~w~~l~~~ve~l~~~-----~~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrL 183 (835)
-+...|...+.+|=+. -|++.|-+++..++..+..|.. ..++|.++|+.++|++
T Consensus 344 rk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~--l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 344 RKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLE--LQAERQEQIDELKNHI 402 (1265)
T ss_pred HhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh
Confidence 1122222233333222 2345555555555555443322 4567888888888765
No 40
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=77.98 E-value=1e+02 Score=32.92 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=11.7
Q ss_pred ccch-hHHHHHHHHHHHHHHH
Q 003266 164 GEVA-EFANIRKQLEVLEDRL 183 (835)
Q Consensus 164 ~~~p-~~~~r~~~le~l~nrL 183 (835)
.|+| ..++|.+.++.|+.-+
T Consensus 120 ~d~Pf~~~eR~~Rl~~L~~~l 140 (251)
T PF11932_consen 120 LDLPFLLEERQERLARLRAML 140 (251)
T ss_pred cCCCCChHHHHHHHHHHHHhh
Confidence 3566 4556777776655444
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=77.46 E-value=49 Score=39.52 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 78 DAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 78 ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
++..+..++..++.++..+......+-..|..+...+.+++.-+..++
T Consensus 228 ~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~ 275 (562)
T PHA02562 228 EAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQ 275 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333323333334444444444444444443
No 42
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.79 E-value=1.9e+02 Score=34.80 Aligned_cols=261 Identities=10% Similarity=0.125 Sum_probs=153.0
Q ss_pred HHHHHHHHHH----HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Q 003266 49 EISASLEEQS----ASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETL 124 (835)
Q Consensus 49 ~l~~~le~~~----~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L 124 (835)
.+...||... .+.++..-.+.+.++++.+++..+.+....++++.+.....+...+....++..-+.+++.=.+.+
T Consensus 53 nLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii 132 (655)
T KOG3758|consen 53 NLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKII 132 (655)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444432 344455445555566666666666666666666666666555565666666666666665555555
Q ss_pred HHh-hhhhhhHHHHHHHhhcCC----HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHH-----HH
Q 003266 125 QDA-AGLTQLSLTVEDVFASGD----LPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLT-----DA 194 (835)
Q Consensus 125 ~eA-~~w~~l~~~ve~l~~~~~----~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~-----~a 194 (835)
..- +++.--..+++.+-.+|+ +=+|-.|..++......+-.+|.+..-.+-++....-.|+.-..-|. .+
T Consensus 133 ~~Fl~~fqLs~~E~~~L~~~g~i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~Ag~eime~M~~~~E~a~erl~r~~qs~e~ 212 (655)
T KOG3758|consen 133 NAFLDNFQLSSEELDLLTESGPIDEDFFKVLDRVQEIHDNCRLLLQTPNQTAGLEIMEKMALIQEGAYERLFRWSQSSEC 212 (655)
T ss_pred HHHHHhcccChHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 432 233222346666666565 67889999999999999988888877777777766666666555555 11
Q ss_pred HhcC---CHHHHHHHHHHHHhccchHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcC-CCcccccC
Q 003266 195 LSNR---KIDIARDLRGILIRIGRFKSL----ELHYTKVHLKYIKQLWEEFESRQRSSKIANEKNEVERIS-SNNEFQSS 266 (835)
Q Consensus 195 ~~~~---~~~~~~~~~~il~~i~R~~~l----~~~Y~~~~~~~l~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 266 (835)
-+-+ +-+.-..+.+.|..+.-.+.+ ++.|...|...+.+.|=...... +.|+.| |.. -++
T Consensus 213 ~~l~~t~~~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~~~L~~~Fisaltrg----------~~~~~PrpIe-l~a- 280 (655)
T KOG3758|consen 213 RNLTGTDSQEVSPILRKAFVFLSSRPVLFKYLIDEVGTARSQSLLRQFISALTRG----------GPGGMPRPIE-LHA- 280 (655)
T ss_pred cCCccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHccC----------CCCCCCCCcc-ccC-
Confidence 1112 234555667777766554555 45577778888877774432211 122222 110 001
Q ss_pred CcchhhhhhhHHHHHHHHHHH----HHHHHHHhhhc----------CCchhchHHHHHH--------HHHHhhhccHHHH
Q 003266 267 APSVMFSSWLPSFYDELLLYL----EQEWKWCMVAF----------PDDYRTLVPKLLV--------ETMASVGGSFVSR 324 (835)
Q Consensus 267 ~~~~~~~~~L~~fy~~lL~~l----~~E~~w~~~vF----------p~~~~~l~~~ll~--------~~~~~l~~si~~~ 324 (835)
+.+.+ |..++|..+ ..|......+| |++...+ +.++. .++..+..++..|
T Consensus 281 hDPlR-------yIGDmLawlHq~ia~Ekelv~aLfd~~~~d~q~n~~~~en~-~~vl~~~dn~lld~i~~gvcrPlkvR 352 (655)
T KOG3758|consen 281 HDPLR-------YIGDMLAWLHQAIANEKELVEALFDFKKEDLQDNISISENL-PNVLGGIDNKLLDDILEGVCRPLKVR 352 (655)
T ss_pred CChHH-------HHHHHHHHHHHHhhhHHHHHHHHhcchhhhhccCCCchhHh-HHHHhchhhhHHHHHHHHhcchhHHH
Confidence 11122 445555444 45888888888 1111111 33444 8888999999999
Q ss_pred Hhhhh
Q 003266 325 INLAT 329 (835)
Q Consensus 325 l~~~~ 329 (835)
+++.+
T Consensus 353 vEqil 357 (655)
T KOG3758|consen 353 VEQIL 357 (655)
T ss_pred HHHHH
Confidence 98765
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.65 E-value=1.1e+02 Score=38.53 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=35.8
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 58 SASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 58 ~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
+.|+...+.++-.+......+...|++.+..++++...++.......+.|..+..-...|++....++
T Consensus 701 i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e 768 (1200)
T KOG0964|consen 701 IDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFE 768 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44555555555555555666666666666666666555554444434444444444444444444443
No 44
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.36 E-value=2.2e+02 Score=34.88 Aligned_cols=91 Identities=21% Similarity=0.317 Sum_probs=51.5
Q ss_pred CHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH--------------HhHHHHHHHHh--cCCH-----HH
Q 003266 145 DLPRAA-ETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDA--------------MVQPRLTDALS--NRKI-----DI 202 (835)
Q Consensus 145 ~~~~ia-~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa--------------~v~p~l~~a~~--~~~~-----~~ 202 (835)
|-..+. ++|..++.-|..|.+ ++..|.+.+..|++.+.. .+.|.|+.... ++.+ +.
T Consensus 153 D~~dlsl~kLeelr~~L~~L~~--ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~ 230 (660)
T KOG4302|consen 153 DESDLSLEKLEELREHLNELQK--EKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDR 230 (660)
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHH
Confidence 333444 777777777776665 566676666666666553 34455555543 2222 33
Q ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003266 203 ARDLRGILIRI--GRFKSLELHYTKVHLKYIKQLWEEFESRQ 242 (835)
Q Consensus 203 ~~~~~~il~~i--~R~~~l~~~Y~~~~~~~l~~~W~~~~~~~ 242 (835)
..+.+.-|... .|...+..+ ...+..+|+.+..++
T Consensus 231 L~~~v~~l~~~k~qr~~kl~~l-----~~~~~~LWn~l~ts~ 267 (660)
T KOG4302|consen 231 LDKMVKKLKEEKKQRLQKLQDL-----RTKLLELWNLLDTSD 267 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhccCCH
Confidence 33344444443 444444443 557789999977655
No 45
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.31 E-value=1.3e+02 Score=32.34 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAE 97 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e 97 (835)
.+..+...+..+.+++..- ...+..++..+..+..+.+.+.+.+..|...+..+...|..+.
T Consensus 46 ~~~~~e~~l~~L~~d~~~L-~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~ 107 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENL-QEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELI 107 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333332 2233556666666677777777777777766666666554443
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.22 E-value=1.5e+02 Score=33.01 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH-HHHHHHHHHH
Q 003266 41 MKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAIS-LRGSVSGILQ 91 (835)
Q Consensus 41 ~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~-L~~~l~~i~~ 91 (835)
..|..++.+-...+.+...++...-|.+.+|.-....+... +..++..|+.
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~ 129 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKT 129 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 46777888888888999899999999999998665544443 4456666655
No 47
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.86 E-value=18 Score=34.66 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhhchhHH
Q 003266 49 EISASLEEQSASALLRVPRATR 70 (835)
Q Consensus 49 ~l~~~le~~~~~~l~~~Pr~~~ 70 (835)
+++.+|..+=+.+.+++-++..
T Consensus 54 ~vs~~l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334333333
No 48
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=71.63 E-value=3.2e+02 Score=35.64 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhcccc-----hhHHHHHHHHHHHHHHHHH
Q 003266 146 LPRAAETLANMRHCLSAVGEV-----AEFANIRKQLEVLEDRLDA 185 (835)
Q Consensus 146 ~~~ia~~L~~~~~sl~~l~~~-----p~~~~r~~~le~l~nrLEa 185 (835)
...+-.++..++..+..++.+ .+|++....++.+..+++.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~d 997 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK 997 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555444444321 2444444444444444443
No 49
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.44 E-value=1.6e+02 Score=31.38 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=35.2
Q ss_pred HHhHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHhhcC-----CHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 003266 107 LSKVDTVKQRM-EAAYETLQDAAGLTQLSLTVEDVFASG-----DLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLE 180 (835)
Q Consensus 107 L~~LD~vK~rl-e~a~~~L~eA~~w~~l~~~ve~l~~~~-----~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~ 180 (835)
-..|+..+..+ +.-...|++-..+ ...+..+++.+ ||++..+-+. -|+..++.++
T Consensus 120 s~~l~~l~~~~~~~yl~~Lke~~~Y---~~slk~vlK~RdqkQ~d~E~l~E~l~----------------~rre~~~kLe 180 (240)
T cd07667 120 STALEELTEDMTEDFLPVLREYILY---SESMKNVLKKRDQVQAEYEAKLEAVA----------------LRKEERPKVP 180 (240)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 34455555555 5577777764334 44555555553 4666555541 1777777777
Q ss_pred HHHHHH
Q 003266 181 DRLDAM 186 (835)
Q Consensus 181 nrLEa~ 186 (835)
.++|+.
T Consensus 181 ~~ie~~ 186 (240)
T cd07667 181 TDVEKC 186 (240)
T ss_pred HHHHHH
Confidence 776654
No 50
>PHA03247 large tegument protein UL36; Provisional
Probab=69.18 E-value=3.6e+02 Score=38.14 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=71.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHh-----hhhhhhHHHHHHHhhcCC-HHHHHHHHHHHHHHHhhcc---cch------
Q 003266 103 SIAALSKVDTVKQRMEAAYETLQDA-----AGLTQLSLTVEDVFASGD-LPRAAETLANMRHCLSAVG---EVA------ 167 (835)
Q Consensus 103 ~~~~L~~LD~vK~rle~a~~~L~eA-----~~w~~l~~~ve~l~~~~~-~~~ia~~L~~~~~sl~~l~---~~p------ 167 (835)
+-.+|..|-..|+|+..-+.-|..| +.|..|........++.+ +..+-+++.++|-+..++. .-+
T Consensus 1699 yaeRidaL~~lR~~ld~Lrr~le~AEaaWDeaW~~F~r~~~~~~~S~e~~~~A~~~a~aLQas~~~V~~Lrad~~Y~RLP 1778 (3151)
T PHA03247 1699 LHARLDALGETRRRTEALRRSLEAAEAEWDEVWGRFGRVRGGAWKSPEALRAAREQLRALQTATNTVLGLRADAHYERLP 1778 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHHHHHHhhhcchhhccCC
Confidence 3335555555555555444444444 268899998888877764 8888888888888885542 222
Q ss_pred ---------hHHHHHHHHHHHHHHHHH---HhHHHHHHHH----hcCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q 003266 168 ---------EFANIRKQLEVLEDRLDA---MVQPRLTDAL----SNRKIDIARDLRGILIRIGRFKSLELHYTKVHL 228 (835)
Q Consensus 168 ---------~~~~r~~~le~l~nrLEa---~v~p~l~~a~----~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~ 228 (835)
.|.+|...|+.|-.+... .+...+..-+ ...+.+..+.+..-|..|- ..|=.||.+...
T Consensus 1779 ak~~g~i~aK~aeR~~ale~f~~~~~~~e~~~~rl~d~l~~rip~E~~~d~Lr~lla~FD~~a--~~LPkW~~~~~~ 1853 (3151)
T PHA03247 1779 AKYQGALGAKSAERAGAVEELGAAVARHDGLLARLREEVVARVPWEMNADALGRLLAEFDALA--GDLAPWAVDEFR 1853 (3151)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCHHHHHHHHHHHHHHH--hhccHHHHHHHH
Confidence 456777777777655433 3322222222 2455666666655555552 234556555443
No 51
>PRK09039 hypothetical protein; Validated
Probab=69.00 E-value=74 Score=35.78 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHH
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAY 121 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~ 121 (835)
-++|..+++++..|+.++..+...+...+....+.-.+|..| +++++.++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L---~~~L~~a~ 185 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL---GRRLNVAL 185 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344555555555555555555555555554443333333332 44555444
No 52
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=68.85 E-value=2.2e+02 Score=32.61 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=76.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQS----------ASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEG--- 98 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~----------~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~--- 98 (835)
++..+..+..++..+-+++...+.+.. ..+-..+-.+..++..++..+..=...+..|-.+|++++-
T Consensus 23 ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKr 102 (383)
T PF04100_consen 23 LDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKR 102 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777776665 2334455566777888888888888888899999988874
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh------HHHHHHHhhc-CCHHHH---HHHHHHHHHHH
Q 003266 99 SSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQL------SLTVEDVFAS-GDLPRA---AETLANMRHCL 160 (835)
Q Consensus 99 ~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l------~~~ve~l~~~-~~~~~i---a~~L~~~~~sl 160 (835)
+...+|..|++|.-.=.-.+.....++. ..+... +.+|-..|+. +++++| ..++..++..|
T Consensus 103 NLT~SIT~LkrL~MLv~a~~qL~~~~~~-r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L 173 (383)
T PF04100_consen 103 NLTQSITTLKRLQMLVTAVEQLKELAKK-RQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNEL 173 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHH
Confidence 3455666666665544433333333331 223322 2233333444 444444 45555555555
No 53
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=68.31 E-value=73 Score=29.05 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHH--HHHHHHHHHHHHHHHHHHHH--hhhcChHHHHHHHHhHHHHHHHHHH
Q 003266 44 QMVSEEISASLEEQSASALLRVPRATRDVVR--LRDDAISLRGSVSGILQKLK--KAEGSSAESIAALSKVDTVKQRMEA 119 (835)
Q Consensus 44 q~~~~~l~~~le~~~~~~l~~~Pr~~~dve~--~~~ea~~L~~~l~~i~~~~~--~~e~~~~~~~~~L~~LD~vK~rle~ 119 (835)
|..-..+-..+++.-.+-+++.|-..+.--. +..+...+..++..|...+. .-.++....++.|+..++.|-.|++
T Consensus 12 Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~KL~lT~ 91 (97)
T PF14966_consen 12 QERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQEKEKLELTA 91 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345556666667777777764443322 55566666666666666665 2224457889999999999999999
Q ss_pred HHHHHH
Q 003266 120 AYETLQ 125 (835)
Q Consensus 120 a~~~L~ 125 (835)
..+.|+
T Consensus 92 ~lQ~lk 97 (97)
T PF14966_consen 92 KLQVLK 97 (97)
T ss_pred HHHhhC
Confidence 988774
No 54
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=67.69 E-value=64 Score=29.90 Aligned_cols=88 Identities=19% Similarity=0.291 Sum_probs=48.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHh-hcccch-hHHHHHHHHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLS-AVGEVA-EFANIRKQLEVL 179 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~-~l~~~p-~~~~r~~~le~l 179 (835)
....++..|+.-++..+.+.+.|.....=......|-.+|=..+..++...|..=...+. ..+.+- ......+.++.+
T Consensus 21 ~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 21 AVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666677777777776544444455566666666665555544444333331 111111 234456677777
Q ss_pred HHHHHHHhHH
Q 003266 180 EDRLDAMVQP 189 (835)
Q Consensus 180 ~nrLEa~v~p 189 (835)
+..|..+++|
T Consensus 101 q~~l~~~~~~ 110 (110)
T TIGR02338 101 QEKIQEALAP 110 (110)
T ss_pred HHHHHHHhcC
Confidence 7777776654
No 55
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=67.63 E-value=8.3 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHHcCCCCh-----hhHHHHHHHhCCCcHHHHHH
Q 003266 771 SVDIEYLSNVLSALSVPIP-----PALATFHTCLSTPRDQLKDL 809 (835)
Q Consensus 771 a~Di~YL~NVl~aLg~~~~-----~~L~~~~~ll~~~~~~~~~~ 809 (835)
.+|++||+||+--.=.... ..+--+.++|+.+|+|.+.+
T Consensus 2 ~~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 2 GINLEYLKNVLLQFLESREPSEREQLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp -HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhh
Confidence 3689999999865433332 35666788899999887654
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=67.24 E-value=2.1e+02 Score=34.52 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=22.8
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 59 ASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLK 94 (835)
Q Consensus 59 ~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~ 94 (835)
..+.+..|++...+..++.....|...+..+++.+.
T Consensus 306 ~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 306 KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345566666666666666666666666666666543
No 57
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=66.90 E-value=10 Score=29.66 Aligned_cols=39 Identities=28% Similarity=0.410 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHcCCCC----hhhHHHHHHHhCCCcHHHHHHh
Q 003266 772 VDIEYLSNVLSALSVPI----PPALATFHTCLSTPRDQLKDLL 810 (835)
Q Consensus 772 ~Di~YL~NVl~aLg~~~----~~~L~~~~~ll~~~~~~~~~~~ 810 (835)
+|++||+||+--.=... ...+--+.++|+.+++|-+...
T Consensus 2 ~n~eYLKNVll~fl~~~e~~r~~ll~vi~tlL~fs~~e~~~~~ 44 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESERETLLKVISTVLQLSPEEMQKLL 44 (46)
T ss_pred ccHHHHHHHHHHHhccCcchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 68999999986543332 2345667788888888876653
No 58
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=65.50 E-value=2.9e+02 Score=33.54 Aligned_cols=15 Identities=7% Similarity=0.136 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhh
Q 003266 226 VHLKYIKQLWEEFES 240 (835)
Q Consensus 226 ~~~~~l~~~W~~~~~ 240 (835)
-++..|.+++.++..
T Consensus 502 KQk~eI~KIl~DTr~ 516 (594)
T PF05667_consen 502 KQKEEIEKILSDTRE 516 (594)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356677777776543
No 59
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=64.62 E-value=56 Score=32.44 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Q 003266 44 QMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYET 123 (835)
Q Consensus 44 q~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~ 123 (835)
+-.+++...++.+.+..++.. |..-.=+..|++....+..+|..+...+++--......+. .-++.++.+++.+.+.
T Consensus 2 ~~~~~e~~~~~~~~~~~~~~~-~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~--e~l~~~~~kl~et~~~ 78 (155)
T PF07464_consen 2 QQHAQEFQKEFQEQVNKLLGS-QNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAE--EALKQLKTKLEETAEK 78 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTSS---SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHH--HHHHHHHHHHHHHHHG
T ss_pred chHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHH--HHHHHHHHHHHHHHHH
Confidence 456667777777776666644 4444434558888888888888777777655443211111 1244556677777766
Q ss_pred HHH
Q 003266 124 LQD 126 (835)
Q Consensus 124 L~e 126 (835)
|+.
T Consensus 79 L~k 81 (155)
T PF07464_consen 79 LRK 81 (155)
T ss_dssp GGG
T ss_pred HHh
Confidence 664
No 60
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=64.08 E-value=2e+02 Score=30.43 Aligned_cols=78 Identities=18% Similarity=0.257 Sum_probs=41.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 003266 106 ALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDA 185 (835)
Q Consensus 106 ~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa 185 (835)
.+..++....+|...+..|+. .|..+....+.+...-.-+++..++..+-...+.=...|.|+.-...++..+.+.+.
T Consensus 107 ~~~~~~~~~~~l~~~~~~Le~--Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~ 184 (225)
T COG1842 107 ELQQAEEQVEKLKKQLAALEQ--KIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEA 184 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554 566666666666555566666666666655543323344454444444444444433
No 61
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=62.15 E-value=91 Score=30.33 Aligned_cols=124 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred CCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 003266 9 SDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSG 88 (835)
Q Consensus 9 ~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~ 88 (835)
..++|+|++-.=..+.+..- ....-..++.....++...|+..+++=-+..-+.+.--..+...+..-++++..
T Consensus 17 ~~~~~~pv~~al~~ld~ss~------g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~ 90 (142)
T PF04048_consen 17 LTDDFNPVELALSLLDDSSV------GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRE 90 (142)
T ss_pred hcCCCcHHHHHHHhcCCCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776666665331 122333344444445555555555443333333444445555556666666666
Q ss_pred HHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 003266 89 ILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVE 138 (835)
Q Consensus 89 i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve 138 (835)
+++.+...-.....--..|++|-.-..+....+++|..-+.....=..|+
T Consensus 91 lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie 140 (142)
T PF04048_consen 91 LKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIE 140 (142)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 66555544433321122566666666666666666665444433333333
No 62
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=61.58 E-value=42 Score=38.77 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHHH----HHh---------HHHHHHHHHHHHHHHHH
Q 003266 77 DDAISLRGSVSGILQKLKKAEGSSAESIAA----LSK---------VDTVKQRMEAAYETLQD 126 (835)
Q Consensus 77 ~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~----L~~---------LD~vK~rle~a~~~L~e 126 (835)
.++..|+..|..+++-...+...+..+|.. +.. -+..|..|+.+..-|.+
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~ 213 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSE 213 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHH
Confidence 355555555555555444444433333321 111 24557788888877774
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.44 E-value=2.3e+02 Score=30.24 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=12.6
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 003266 164 GEVAEFANIRKQLEVLEDRLD 184 (835)
Q Consensus 164 ~~~p~~~~r~~~le~l~nrLE 184 (835)
.++|.-+.-++.++.|+-..+
T Consensus 143 ~dv~~~ek~r~vlea~~~E~~ 163 (251)
T PF11932_consen 143 ADVSLAEKFRRVLEAYQIEME 163 (251)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 456666666666776655443
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.21 E-value=1.2e+02 Score=38.08 Aligned_cols=91 Identities=9% Similarity=0.108 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTV 113 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~v 113 (835)
.+...=-++|.++. +++..-.+. .++..++-.+-++++.+-+++..+.+.|+.+..+...+......+...+..+..-
T Consensus 658 Gy~D~krsrLe~~k-~~~~~~~~~-~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e 735 (1200)
T KOG0964|consen 658 GYEDQKRSRLELLK-NVNESRSEL-KELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGE 735 (1200)
T ss_pred cchhhhhhHHHHHh-hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Confidence 45555566776666 666665555 5566666677788888889999999999999888888888777777778888888
Q ss_pred HHHHHHHHHHHHH
Q 003266 114 KQRMEAAYETLQD 126 (835)
Q Consensus 114 K~rle~a~~~L~e 126 (835)
|.+++.+......
T Consensus 736 ~~~v~~s~~~k~~ 748 (1200)
T KOG0964|consen 736 KSRVQESLEPKGK 748 (1200)
T ss_pred HHHHHHHhhHHHH
Confidence 8888887776653
No 65
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.85 E-value=1.6e+02 Score=31.11 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
....+.+..++..|..+|..+-.++...+.........|..+...-.-.+.++..|.
T Consensus 28 ~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 28 EKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666778888888888888888888887766666666665555555555555555
No 66
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=59.85 E-value=3.3e+02 Score=31.63 Aligned_cols=47 Identities=9% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCCCCHHHHHhhhcCCCCCCc-c-hhhhHHHHHHHHHHHHHHHHHHHHH
Q 003266 10 DEKFDPKKWINSACQTRHSQD-S-LDNHLVDLEMKLQMVSEEISASLEE 56 (835)
Q Consensus 10 ~~~FD~~~wIN~~~~~~~~~~-~-ld~~i~~l~~kLq~~~~~l~~~le~ 56 (835)
+.||.+.||+-+.-.+.++.+ . +-+....+..+|+.+.+.+...+..
T Consensus 229 e~D~ti~D~vAd~ra~TPtaaae~~~p~~~el~qrLd~l~~RL~~am~~ 277 (432)
T TIGR00237 229 ETDFTISDFVADLRAPTPSAAAEIVSPNQDELLQRLDGFNVRLHRAFDT 277 (432)
T ss_pred CCCccHHHHhhhccCCCcHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777765544433321 1 2244455555555555444444333
No 67
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.74 E-value=1.7e+02 Score=35.17 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh---H-HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHH--------
Q 003266 68 ATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS---A-ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSL-------- 135 (835)
Q Consensus 68 ~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~---~-~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~-------- 135 (835)
+...+..++..+....+++..|++.+.++...- + .+-.-......+|+.+.+-...++.| |..|..
T Consensus 99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a--~~~Le~~L~~ie~~ 176 (560)
T PF06160_consen 99 AKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPA--IEELEKQLENIEEE 176 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--HHHHHHHHHHHHHH
Confidence 344455566666666666666666665554321 2 22223455666777777666666653 333332
Q ss_pred --HHHHHhhcCCHHHHHHHHHHHHHHHhhc----ccchhH
Q 003266 136 --TVEDVFASGDLPRAAETLANMRHCLSAV----GEVAEF 169 (835)
Q Consensus 136 --~ve~l~~~~~~~~ia~~L~~~~~sl~~l----~~~p~~ 169 (835)
+.+++...|||.++.+-|..++..+..+ ..+|.+
T Consensus 177 F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l 216 (560)
T PF06160_consen 177 FSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKL 216 (560)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444456699999999999999998655 445653
No 68
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.66 E-value=4e+02 Score=32.50 Aligned_cols=52 Identities=10% Similarity=0.042 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHhhcccchhHH--HHHHHHHHHHHHHHHHhHHHHHHHHhcCCHH
Q 003266 144 GDLPRAAETLANMRHCLSAVGEVAEFA--NIRKQLEVLEDRLDAMVQPRLTDALSNRKID 201 (835)
Q Consensus 144 ~~~~~ia~~L~~~~~sl~~l~~~p~~~--~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~ 201 (835)
.++..|=+.|.-+.++ -|+.+ ........++.+.|.+|-..+.-.++-+..+
T Consensus 205 sgIdvId~el~fv~~s------~~evrN~a~~vLe~glq~~ne~qvgtglqvfynfgtLe 258 (797)
T KOG2211|consen 205 SGIDVIDKELMFVSNS------SPEVRNKALPVLEAGLQSHNEQQVGTGLQVFYNFGTLE 258 (797)
T ss_pred cchHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHhhcHHHHhhHHHHHHhcchHH
Confidence 3455555555544444 23332 2334555666666666666666666555443
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.55 E-value=3.6e+02 Score=33.32 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 003266 106 ALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 106 ~L~~LD~vK~rle~a~~~L~ 125 (835)
.+.++|..+.|++.--+.|.
T Consensus 484 ~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555554
No 70
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.34 E-value=2.2e+02 Score=30.25 Aligned_cols=70 Identities=9% Similarity=0.181 Sum_probs=38.3
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh
Q 003266 63 LRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVF 141 (835)
Q Consensus 63 ~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~ 141 (835)
..+-....+++.+.+|=...-+.|+.|..+|..+|. .|++...-|.+.+..+.-+.+ .+..|..+|+.++
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~-------iIkqa~~er~~~~~~i~r~~e--ey~~Lk~~in~~R 101 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN-------IIKQAESERNKRQEKIQRLYE--EYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 444444555555666666666666666666665554 344455555555555555543 4444555555443
No 71
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=58.00 E-value=2.8e+02 Score=30.24 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=38.2
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003266 62 LLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAE-GSSAESIAALSKVDTVKQRMEAAYETLQD 126 (835)
Q Consensus 62 l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e-~~~~~~~~~L~~LD~vK~rle~a~~~L~e 126 (835)
+..+|....+.+.+......|...+..|..++.+.. .......+.+..++.+...+..|....+.
T Consensus 20 L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~ 85 (291)
T PF10475_consen 20 LEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKN 85 (291)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433344455555666666666655553333 33445666777777777777777777774
No 72
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.97 E-value=3.5e+02 Score=31.32 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=22.4
Q ss_pred CCCCHHHHHhhhcCCCCCCc--chhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003266 11 EKFDPKKWINSACQTRHSQD--SLDNHLVDLEMKLQMVSEEISASLEEQ 57 (835)
Q Consensus 11 ~~FD~~~wIN~~~~~~~~~~--~ld~~i~~l~~kLq~~~~~l~~~le~~ 57 (835)
.||...|++-+.-.+.++.+ -+-+....+..+|+.+.+.+...+...
T Consensus 235 ~D~tl~D~vAd~ra~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~ 283 (438)
T PRK00286 235 TDFTIADFVADLRAPTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRR 283 (438)
T ss_pred CCccHHHHhhhccCCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655443333311 122455555555555555554444433
No 73
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.39 E-value=2.6e+02 Score=30.25 Aligned_cols=90 Identities=20% Similarity=0.169 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-h--HHHHHHHHhHHH
Q 003266 37 VDLEMKLQMVSEEISA-SLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGS-S--AESIAALSKVDT 112 (835)
Q Consensus 37 ~~l~~kLq~~~~~l~~-~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~-~--~~~~~~L~~LD~ 112 (835)
+.++.-|=-.++++.. .+-+++..-+..+-+.+.|++.++-++.=|+.++..|.+..+..... + .+.=..-+.|..
T Consensus 125 S~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~ 204 (269)
T PF05278_consen 125 SYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLEL 204 (269)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556644 46777788888888899999999999999999999988775544321 1 111113344555
Q ss_pred HHHHHHHHHHHHHH
Q 003266 113 VKQRMEAAYETLQD 126 (835)
Q Consensus 113 vK~rle~a~~~L~e 126 (835)
.+..|+...+-|++
T Consensus 205 ~~~ELe~~~EeL~~ 218 (269)
T PF05278_consen 205 KKEELEELEEELKQ 218 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444443
No 74
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=57.09 E-value=5.9e+02 Score=33.65 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhcccch-----hHHHHHHHHHHHHHHHHHH
Q 003266 148 RAAETLANMRHCLSAVGEVA-----EFANIRKQLEVLEDRLDAM 186 (835)
Q Consensus 148 ~ia~~L~~~~~sl~~l~~~p-----~~~~r~~~le~l~nrLEa~ 186 (835)
.+-.++..+...+..++.|. +|++..+.++.++.+.+..
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl 989 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDL 989 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777776665554 6777777777777766654
No 75
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=56.95 E-value=44 Score=31.82 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=42.0
Q ss_pred hhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccCCCCCCchhhhhhHHHHHHHHHHHHHH
Q 003266 671 RLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGISTSDNNDEAQFFATEWMFKVAEGASA 750 (835)
Q Consensus 671 ~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~ 750 (835)
++.++|++=-|+..+ +|+ .|+.||.+|-.-|...-. -+.. -.+......|+..++..++.
T Consensus 14 ~v~~Ip~~YR~Tnk~------~Pt---~~S~yV~~il~Pl~~F~~---~~~~--------~~~~~~~~~~~~~v~~~v~~ 73 (125)
T PF12022_consen 14 QVRSIPRQYRMTNKP------VPT---KPSPYVSSILRPLKSFLE---EYSS--------YLSPEIIEEWLQKVITEVTE 73 (125)
T ss_pred HHhhhHHHhhccCCC------CCC---CccHHHHHHHHHHHHHHH---Hhhc--------cCCHHHHHHHHHHHHHHHHH
Confidence 356677765565433 453 599999998665554322 2200 01135678999999999999
Q ss_pred HHHHHh
Q 003266 751 LYMEQL 756 (835)
Q Consensus 751 ~y~e~i 756 (835)
.|.+.+
T Consensus 74 ~y~~~~ 79 (125)
T PF12022_consen 74 RYYEIA 79 (125)
T ss_pred HHHHHH
Confidence 997643
No 76
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=56.76 E-value=3e+02 Score=30.85 Aligned_cols=29 Identities=21% Similarity=0.558 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCCch
Q 003266 274 SWLPSFYDELLLYLEQEWKWCMVAFPDDY 302 (835)
Q Consensus 274 ~~L~~fy~~lL~~l~~E~~w~~~vFp~~~ 302 (835)
.|...+-..+...+..|.+.|..|||...
T Consensus 3 ~wi~~~~~~~~~l~~~E~~L~~~vf~~~~ 31 (371)
T PF03081_consen 3 RWIQAYKVALKKLFQSERRLCDQVFPESS 31 (371)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 58888888899999999999999999874
No 77
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.90 E-value=1.5e+02 Score=29.92 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcc
Q 003266 144 GDLPRAAETLANMRHCLSAVG 164 (835)
Q Consensus 144 ~~~~~ia~~L~~~~~sl~~l~ 164 (835)
+.++..|+++..|++.+.+|.
T Consensus 199 ~pv~~La~qir~irRlve~le 219 (222)
T KOG4514|consen 199 KPVEQLAQQIRQIRRLVEMLE 219 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 445577888888888876664
No 78
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=54.94 E-value=86 Score=35.85 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=18.6
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003266 99 SSAESIAALSKVDTVKQRMEAAYETLQD 126 (835)
Q Consensus 99 ~~~~~~~~L~~LD~vK~rle~a~~~L~e 126 (835)
..+.++.+|+.|..+...+..+.+.|..
T Consensus 313 ~lP~lv~RL~tL~~lH~~a~~~~~~l~~ 340 (388)
T PF04912_consen 313 SLPSLVERLKTLKSLHEEAAEFSQTLSE 340 (388)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777776666666653
No 79
>PF15294 Leu_zip: Leucine zipper
Probab=54.64 E-value=93 Score=33.82 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 003266 68 ATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTV 137 (835)
Q Consensus 68 ~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~v 137 (835)
+..|+.+++.|-..|++++..+......+-.+-...-++|..|-.+..+...-...+-.++..+.|...+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~ 199 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKM 199 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHH
Confidence 4466666666666666666666665554443333333445554443333333222233334444444333
No 80
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.42 E-value=4e+02 Score=30.89 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003266 34 NHLVDLEMKLQMVSEEIS 51 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~ 51 (835)
..|+.++.-|+...++++
T Consensus 345 ~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777777766665
No 81
>PHA03332 membrane glycoprotein; Provisional
Probab=52.57 E-value=4.4e+02 Score=33.77 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCHHHHHhhhcCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q 003266 2 MLDLGPFSDEKFDPKKWINSACQTRHSQDSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAIS 81 (835)
Q Consensus 2 ~~dls~F~~~~FD~~~wIN~~~~~~~~~~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~ 81 (835)
+.|+..|..+.|-++.|+........=...-.+++.. -..|+...|.++....-. ++.++. ..++..|+..+..
T Consensus 829 v~dlw~~t~~~~rprRF~G~viag~AIGvATAAqiTA-~vAL~~A~QAL~va~~~~-~~llqn----aaaia~mksaIg~ 902 (1328)
T PHA03332 829 VLDLWHETVKMFAPRRFGGSVMAGDAIGLSAAAFTMA-SAALNAATQALAVATLYV-NQLLQA----TAATAEMASKIGG 902 (1328)
T ss_pred hhhhhhhhccccccccchhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhh-hHHHHH----HHHHHHHHHHHHH
Confidence 3567777777777777777665442210000111111 223444444333333322 445555 6666677777777
Q ss_pred HHHHHHHHHHHHHhhhc
Q 003266 82 LRGSVSGILQKLKKAEG 98 (835)
Q Consensus 82 L~~~l~~i~~~~~~~e~ 98 (835)
+...+..+.+.+.+.-.
T Consensus 903 tNaAV~~lsDai~klGn 919 (1328)
T PHA03332 903 LNARVDKTSDVITKLGD 919 (1328)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 77777666665555443
No 82
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=51.82 E-value=2.3e+02 Score=27.24 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003266 76 RDDAISLRGSVSGILQKL 93 (835)
Q Consensus 76 ~~ea~~L~~~l~~i~~~~ 93 (835)
++++..+++.+..|..++
T Consensus 88 ~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 333333333333333333
No 83
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=51.65 E-value=4.1e+02 Score=30.17 Aligned_cols=97 Identities=15% Similarity=0.327 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhhcChHHHHH-HHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 003266 82 LRGSVSGILQKLKKAEGSSAESIA-ALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCL 160 (835)
Q Consensus 82 L~~~l~~i~~~~~~~e~~~~~~~~-~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl 160 (835)
|...+....++|..-|...+.-+. .+.+...++.++..+....+++.. .|.. .++.+.+|.+.|+.+++-|
T Consensus 246 l~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~------~V~~--~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 246 LQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE------GVSE--RTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHH--HHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544433232 455566666666666655554322 2221 1223457888888888887
Q ss_pred h----hcccchhHHHHHHHHHHHHHHHHHH
Q 003266 161 S----AVGEVAEFANIRKQLEVLEDRLDAM 186 (835)
Q Consensus 161 ~----~l~~~p~~~~r~~~le~l~nrLEa~ 186 (835)
. ...|..-.-..++.|.+|++.+..|
T Consensus 318 eerg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 318 EERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4 3344334445666777777766543
No 84
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.46 E-value=5e+02 Score=34.82 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccc-ch----hHHHHHHHHHHHHHHHHH
Q 003266 144 GDLPRAAETLANMRHCLSAVGE-VA----EFANIRKQLEVLEDRLDA 185 (835)
Q Consensus 144 ~~~~~ia~~L~~~~~sl~~l~~-~p----~~~~r~~~le~l~nrLEa 185 (835)
..+..+-..+..++..+..+.. ++ ++..+...+..|++++..
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~e 868 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNE 868 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766533 33 445555666666555443
No 85
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=51.30 E-value=6.7e+02 Score=32.56 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHHHhhccc
Q 003266 145 DLPRAAETLANMRHCLSAVGE 165 (835)
Q Consensus 145 ~~~~ia~~L~~~~~sl~~l~~ 165 (835)
.+..+-.++..+...+.-|..
T Consensus 966 ~~~~l~~~i~~lg~aiee~~~ 986 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKELGP 986 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHcCC
Confidence 345555555555555444443
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.34 E-value=3.5e+02 Score=28.93 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003266 170 ANIRKQLEVLEDRLDA 185 (835)
Q Consensus 170 ~~r~~~le~l~nrLEa 185 (835)
+.....++.++.++++
T Consensus 120 ~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 120 EKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 87
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=50.06 E-value=2.3e+02 Score=27.56 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=61.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHH
Q 003266 101 AESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFA-NIRKQLEVL 179 (835)
Q Consensus 101 ~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~~~-~r~~~le~l 179 (835)
...+.....+..+..+|..++..|.++..-..- .+. ...++.+.+.+....+.+..|..+|.-. +-+...+.+
T Consensus 45 ~~~~~~~~~l~~~~~~l~~~r~~l~~~~~~~~~-~~~-----~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 118 (171)
T PF02203_consen 45 QQSLQQVNALADASSNLLQARLALNRALLQGDS-PDA-----AELLARAEQNLEQAEQAFDAFKALPHASPEERALADEL 118 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-SCC-----HHHHHHHHHHHHHHHHHHHHHHCS---GTGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccH-----HHHHHHHHHHHHHHHHHHHHHHccCCCCcchHHHHHHH
Confidence 455667778888888888888888862111111 000 1225677888888888888888888755 555577777
Q ss_pred HHHHHHH---hHHHHHHHHhcCCHHHHH
Q 003266 180 EDRLDAM---VQPRLTDALSNRKIDIAR 204 (835)
Q Consensus 180 ~nrLEa~---v~p~l~~a~~~~~~~~~~ 204 (835)
..+++.. ....+..++..+|.+...
T Consensus 119 ~~~~~~~~~~~l~~~~~al~~~d~~~~~ 146 (171)
T PF02203_consen 119 EASFDAYLQQALDPLLAALRAGDIAAFM 146 (171)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHCCCHHHHH
Confidence 7777773 345667777777766443
No 88
>PRK03918 chromosome segregation protein; Provisional
Probab=49.55 E-value=6.5e+02 Score=31.87 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=3.6
Q ss_pred HHHHHHHh
Q 003266 231 IKQLWEEF 238 (835)
Q Consensus 231 l~~~W~~~ 238 (835)
...+|..+
T Consensus 749 ~~~if~~l 756 (880)
T PRK03918 749 ASEIFEEL 756 (880)
T ss_pred HHHHHHHH
Confidence 34445443
No 89
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.46 E-value=4.4e+02 Score=34.20 Aligned_cols=172 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHh
Q 003266 30 DSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSK 109 (835)
Q Consensus 30 ~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~ 109 (835)
.++...+...-+++|....++..-+... .+.++.+-.+-.-+..++......+..+..++.++........+.-+.|.+
T Consensus 489 ~~~~~~~n~~~~e~~vaesel~~L~~~~-~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 489 MPLLKQVNEARSELDVAESELDILLSRH-ETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHH
Q 003266 110 VDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQP 189 (835)
Q Consensus 110 LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p 189 (835)
+..--+++..-...++. ....+.+........+ +|-..|..++.+ +.+|+|-.|.--|-.+-.+.+..++.
T Consensus 568 ~~~e~~~~~~~~~~~rq--rveE~ks~~~~~~s~~---kVl~al~r~kes----G~i~Gf~GRLGDLg~Id~kYDvAIsT 638 (1293)
T KOG0996|consen 568 LRKEERNLKSQLNKLRQ--RVEEAKSSLSSSRSRN---KVLDALMRLKES----GRIPGFYGRLGDLGAIDEKYDVAIST 638 (1293)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhh---HHHHHHHHHHHc----CCCCccccccccccccchHHHHHHHH
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHh
Q 003266 190 RLTDALSN---RKIDIARDLRGILIR 212 (835)
Q Consensus 190 ~l~~a~~~---~~~~~~~~~~~il~~ 212 (835)
+-..+.. +.++.|++|+..+..
T Consensus 639 -ac~~LdyiVVdt~e~aq~cI~fl~~ 663 (1293)
T KOG0996|consen 639 -ACARLDYIVVDTIETAQECINFLKK 663 (1293)
T ss_pred -hccccceEEeccHHHHHHHHHHHHH
No 90
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=48.53 E-value=2.2e+02 Score=26.07 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=53.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHh-hcccch-hHHHHHHHHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLS-AVGEVA-EFANIRKQLEVL 179 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~-~l~~~p-~~~~r~~~le~l 179 (835)
.....+..|+.-+...+.+.+.|...+.=......|-.+|=..+.+++...|..-...+. .+..+- .+....+.+..+
T Consensus 17 ~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 17 AYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777777777777777554444555677777777777777777766555543 222222 456677777777
Q ss_pred HHHHHHH
Q 003266 180 EDRLDAM 186 (835)
Q Consensus 180 ~nrLEa~ 186 (835)
+.+|+.+
T Consensus 97 k~~l~~~ 103 (105)
T cd00632 97 QEKIQQA 103 (105)
T ss_pred HHHHHHH
Confidence 7777654
No 91
>PRK09039 hypothetical protein; Validated
Probab=48.45 E-value=4.4e+02 Score=29.64 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 003266 170 ANIRKQLEVLEDRLDAMVQ 188 (835)
Q Consensus 170 ~~r~~~le~l~nrLEa~v~ 188 (835)
.+.+.+++.|+.+|+..+.
T Consensus 168 ~~~~~~i~~L~~~L~~a~~ 186 (343)
T PRK09039 168 RESQAKIADLGRRLNVALA 186 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667777776666653
No 92
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=48.15 E-value=6.9e+02 Score=33.02 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh
Q 003266 59 ASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS 100 (835)
Q Consensus 59 ~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~ 100 (835)
.++-..++.+.++++.++.+...+......+..++...+...
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1163)
T COG1196 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666665555555555555555555443
No 93
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.66 E-value=2.8e+02 Score=27.10 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 003266 109 KVDTVKQRMEAAYETLQDA 127 (835)
Q Consensus 109 ~LD~vK~rle~a~~~L~eA 127 (835)
.|+..-.+|..+.+-|+++
T Consensus 88 ele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666554
No 94
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.58 E-value=3.6e+02 Score=32.44 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhhcCC---HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 003266 117 MEAAYETLQDAAGLTQLSLTVEDVFASGD---LPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAM 186 (835)
Q Consensus 117 le~a~~~L~eA~~w~~l~~~ve~l~~~~~---~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~ 186 (835)
++.-+..|..++........+-.++.... -..+...|..+.+.|..+ --|.+.+....++.....|+..
T Consensus 214 L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~-~d~~~~~~~~~l~~~~~~l~d~ 285 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASV-IDGSLRELAEQVGNALTEVEEA 285 (563)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHh-hhHhHHHHHHHHHHHHHHHHHH
Confidence 44444455544444444444444442210 002345555555555443 3345555555555555555543
No 95
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.09 E-value=2.1e+02 Score=25.59 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 66 PRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 66 Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
-....+++.|..+-..|-..|........+++... .-|+.||..++++++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~----------~Evs~rL~~a~e~Ir 84 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEAN----------REVSRRLDSAIETIR 84 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444444322 235566666666665
No 96
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=46.62 E-value=3e+02 Score=27.18 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 003266 146 LPRAAETLANMRHCLSAV 163 (835)
Q Consensus 146 ~~~ia~~L~~~~~sl~~l 163 (835)
+..+|.++..+++.+..|
T Consensus 128 v~~La~qIK~Ik~~lD~l 145 (149)
T PF10157_consen 128 VYKLAQQIKDIKKLLDLL 145 (149)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346666666666666554
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.47 E-value=2e+02 Score=32.05 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHH
Q 003266 72 VVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAY 121 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~ 121 (835)
++.++++...+..++...+.++.+.+......-..++.+..-|+.+...+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333333333444444444444333
No 98
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.38 E-value=6.1e+02 Score=30.62 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhcCC-ch-hchHHHHHHHHHHhhhccHHHHHhh
Q 003266 287 LEQEWKWCMVAFPD-DY-RTLVPKLLVETMASVGGSFVSRINL 327 (835)
Q Consensus 287 l~~E~~w~~~vFp~-~~-~~l~~~ll~~~~~~l~~si~~~l~~ 327 (835)
++...+-+-..|.+ .| .. ......++..+.|....||..
T Consensus 519 V~~~f~~Ae~lF~~~~Y~~a--l~~~~~alE~vePG~~~ri~~ 559 (569)
T PRK04778 519 VAEALNEAERLFREYDYKAA--LEIIATALEKVEPGVTKRIED 559 (569)
T ss_pred HHHHHHHHHHHHHhCChHHH--HHHHHHHHHhhCCcHHHHHHH
Confidence 33344444566722 22 22 234556666667766666653
No 99
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.75 E-value=2.4e+02 Score=25.76 Aligned_cols=87 Identities=23% Similarity=0.359 Sum_probs=56.0
Q ss_pred hhhHHHHHHHH----H-HHHHHHHHHHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHH
Q 003266 33 DNHLVDLEMKL----Q-MVSEEISASLEEQSASALLRVPRATR-DVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAA 106 (835)
Q Consensus 33 d~~i~~l~~kL----q-~~~~~l~~~le~~~~~~l~~~Pr~~~-dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~ 106 (835)
+++|+.|..+. . -+..+++..||+- -++..+.++.. .-..|++-+..|..++..+..+++.+ +.++++
T Consensus 24 ~PhirqLAdkM~dKt~ef~qHeLe~~iEdY--KLLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL----~P~lqQ 97 (120)
T KOG4559|consen 24 DPHIRQLADKMFDKTEEFFQHELEAPIEDY--KLLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENL----APMLQQ 97 (120)
T ss_pred CccHHHHHHHHHHhHHHHHHHHHcCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH----HHHHHH
Confidence 46777776654 2 2345667766654 12333332222 23346777777777777777777655 457889
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 003266 107 LSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 107 L~~LD~vK~rle~a~~~L~ 125 (835)
|..+|-.-.|+++|.-.|.
T Consensus 98 IDaiddst~kLEaAa~~Ld 116 (120)
T KOG4559|consen 98 IDAIDDSTDKLEAAAAKLD 116 (120)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999887765
No 100
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=44.89 E-value=3e+02 Score=26.60 Aligned_cols=92 Identities=12% Similarity=0.160 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTV 113 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~v 113 (835)
..+-.|..++|.+.......|...=.++.++ .+ .+-..+..+...|..-+.++.++ ...|.+++.+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~r----iK---evd~~~~~l~~~~~erqk~~~k~-------ae~L~kv~el 92 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKR----IK---EVDQEIAKLLQQMVERQKRFAKF-------AEQLEKVNEL 92 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 5677778888888766666666553444444 33 34445556666666666666543 4478888888
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Q 003266 114 KQRMEAAYETLQDAAGLTQLSLTVEDVFA 142 (835)
Q Consensus 114 K~rle~a~~~L~eA~~w~~l~~~ve~l~~ 142 (835)
...+..+...|++ -..+...+..++-
T Consensus 93 s~~L~~~~~lL~~---~v~~ie~LN~~LP 118 (131)
T PF10158_consen 93 SQQLSRCQSLLNQ---TVPSIETLNEILP 118 (131)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhCC
Confidence 8899999888884 4444445554443
No 101
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=44.67 E-value=8.3e+02 Score=31.72 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 003266 625 RKLFNLL 631 (835)
Q Consensus 625 ~~l~~ll 631 (835)
..+..+|
T Consensus 1130 ~~~~~~~ 1136 (1179)
T TIGR02168 1130 ERFANLL 1136 (1179)
T ss_pred HHHHHHH
Confidence 3333444
No 102
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=44.26 E-value=3e+02 Score=29.13 Aligned_cols=54 Identities=11% Similarity=0.208 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 72 VVRLRDDAISLRGSVS-GILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~-~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
++.+.+.+..|+.+|. .+....+.++......|..+..|+.....|...+=.|+
T Consensus 169 l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~~~IP~L~ 223 (229)
T PF11101_consen 169 LQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDSLQQLDQQEQQLQQRIPELK 223 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 5667777777777776 67777788888778999999999999999988775554
No 103
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.71 E-value=8.3e+02 Score=31.42 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 003266 222 HYTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 222 ~Y~~~~~~~l~~~W~~~~~ 240 (835)
.|++.+...+...|+.+..
T Consensus 881 ~~~dt~i~~~~~~~e~~~~ 899 (1174)
T KOG0933|consen 881 RDIDTEISGLLTSQEKCLS 899 (1174)
T ss_pred HhhhHHHhhhhhHHHHHHH
Confidence 3466666666777766544
No 104
>PLN03217 transcription factor ATBS1; Provisional
Probab=43.04 E-value=1.1e+02 Score=27.21 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 33 DNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQK 92 (835)
Q Consensus 33 d~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~ 92 (835)
|-.|..|++|||.+.-+++..=-..-..+.+-+.....=+..+..|+..|.+.+..+...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999999998777541000000111111112222666788999999999888765
No 105
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.95 E-value=1.2e+02 Score=34.51 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=8.3
Q ss_pred CCCCCHHHHHhhh
Q 003266 10 DEKFDPKKWINSA 22 (835)
Q Consensus 10 ~~~FD~~~wIN~~ 22 (835)
...-|+.+|=-..
T Consensus 188 es~vd~~eWklEv 200 (359)
T PF10498_consen 188 ESKVDPAEWKLEV 200 (359)
T ss_pred cccCCHHHHHHHH
Confidence 3456888885544
No 106
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.62 E-value=6.8e+02 Score=30.15 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 003266 72 VVRLRDDAISLRGSVS 87 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~ 87 (835)
++.+...+..|-+.|.
T Consensus 280 ~~~i~~~Id~lYd~le 295 (560)
T PF06160_consen 280 NEEIEERIDQLYDILE 295 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 107
>PRK03918 chromosome segregation protein; Provisional
Probab=42.04 E-value=8.2e+02 Score=30.93 Aligned_cols=49 Identities=8% Similarity=0.148 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHH
Q 003266 72 VVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAA 120 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a 120 (835)
+..++.+...+...+..+..++...+......-..+..|...+.+++..
T Consensus 195 l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l 243 (880)
T PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEEL 243 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333333444444444444443
No 108
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.96 E-value=1e+03 Score=31.96 Aligned_cols=110 Identities=4% Similarity=0.069 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHh---hcCCHHHHHHH
Q 003266 76 RDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVF---ASGDLPRAAET 152 (835)
Q Consensus 76 ~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~---~~~~~~~ia~~ 152 (835)
..++..+...+..+..++......+...-+.|..++..|.++..-++.++.-.....+..+|+.|- ..-++..+..-
T Consensus 976 e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e 1055 (1311)
T TIGR00606 976 ETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQE 1055 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 333334444444455555544444455555788888888888888888865445566666666663 33455555555
Q ss_pred HHHHHHHHhhcccc-----hhHHHHHHHHHHHHHHHHH
Q 003266 153 LANMRHCLSAVGEV-----AEFANIRKQLEVLEDRLDA 185 (835)
Q Consensus 153 L~~~~~sl~~l~~~-----p~~~~r~~~le~l~nrLEa 185 (835)
...+......+..- -+......+|..++..|+.
T Consensus 1056 ~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1056 HQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 55555554444321 1223344456666666633
No 109
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=41.95 E-value=3.8e+02 Score=27.01 Aligned_cols=10 Identities=10% Similarity=0.305 Sum_probs=4.5
Q ss_pred hhHHHHHHHh
Q 003266 132 QLSLTVEDVF 141 (835)
Q Consensus 132 ~l~~~ve~l~ 141 (835)
.+.+++.+++
T Consensus 141 ~~~~e~~~l~ 150 (191)
T PF04156_consen 141 ELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 110
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.82 E-value=2e+02 Score=24.76 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 49 EISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAE 97 (835)
Q Consensus 49 ~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e 97 (835)
++-..||..+++++.++-.+-.+++.++.+-..|.+.-..++.+..+..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5566777777777777666666666666665555555555555444444
No 111
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=41.82 E-value=5.8e+02 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 003266 170 ANIRKQLEVLEDRLDAMVQPRL 191 (835)
Q Consensus 170 ~~r~~~le~l~nrLEa~v~p~l 191 (835)
+.-...|..-+.+||..+.-.=
T Consensus 344 ~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 344 EASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666655443
No 112
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=41.76 E-value=38 Score=33.96 Aligned_cols=53 Identities=30% Similarity=0.370 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 36 LVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLK 94 (835)
Q Consensus 36 i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~ 94 (835)
+.+|+.||+..| |=+.-||..+++-. .+.-+++++++|+..|+..+ .|+++..
T Consensus 2 LeD~EsklN~AI-ERnalLE~ELdEKE----~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAI-ERNALLESELDEKE----NLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHCH----------------------
T ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 568999999999 66777777653211 12334555556666655555 4544443
No 113
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=40.63 E-value=3.3e+02 Score=31.08 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 003266 36 LVDLEMKLQMVSEEIS 51 (835)
Q Consensus 36 i~~l~~kLq~~~~~l~ 51 (835)
+.+|...++.+.+++.
T Consensus 229 ld~L~~~ltrL~~~~~ 244 (370)
T PLN03094 229 LDELVGICTRLAREME 244 (370)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3455555555555443
No 114
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=40.59 E-value=7.6e+02 Score=30.09 Aligned_cols=120 Identities=11% Similarity=0.146 Sum_probs=66.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhH----HHHHHHhhcCCHHHHHHHHHHHHHHHhhc-----ccchhHHH
Q 003266 101 AESIAALSKVDTVKQRMEAAYETLQDAAGLTQLS----LTVEDVFASGDLPRAAETLANMRHCLSAV-----GEVAEFAN 171 (835)
Q Consensus 101 ~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~----~~ve~l~~~~~~~~ia~~L~~~~~sl~~l-----~~~p~~~~ 171 (835)
.++-+.+.++..+|..++....-++ .|..+. .+++.+=+..+-....+|+.++=....=. +=+-|-..
T Consensus 440 ~e~~~~~~~ik~~r~~~k~~~~e~~---~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~ 516 (594)
T PF05667_consen 440 SESKQKLQEIKELREEIKEIEEEIR---QKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRE 516 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888777666 455444 44555544444333344444433332111 11223345
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 172 IRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 172 r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~~~ 240 (835)
.++.|..++.+|+..-.-.=. .||.+-.+...++..|- ..+.|+..++.+..
T Consensus 517 lQkeiN~l~gkL~RtF~v~dE---------------lifrdAKkDe~~rkaYK--~La~lh~~c~~Li~ 568 (594)
T PF05667_consen 517 LQKEINSLTGKLDRTFTVTDE---------------LIFRDAKKDEAARKAYK--LLASLHENCSQLIE 568 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHH---------------HHHHHhhcCHHHHHHHH--HHHHHHHHHHHHHH
Confidence 666777777777655222111 24555556666677765 56677777777654
No 115
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.36 E-value=1.1e+03 Score=31.73 Aligned_cols=15 Identities=7% Similarity=-0.113 Sum_probs=11.7
Q ss_pred CHHHHHhhhcCCCCC
Q 003266 14 DPKKWINSACQTRHS 28 (835)
Q Consensus 14 D~~~wIN~~~~~~~~ 28 (835)
++.+||.+.+++...
T Consensus 205 ~l~~~l~~~l~~l~~ 219 (1353)
T TIGR02680 205 VLSDALTEALPPLDD 219 (1353)
T ss_pred HHHHHHHHhCCCCCH
Confidence 457899999988764
No 116
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.34 E-value=4.4e+02 Score=29.27 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=12.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 003266 56 EQSASALLRVPRATRDVVRLRDDAISLRG 84 (835)
Q Consensus 56 ~~~~~~l~~~Pr~~~dve~~~~ea~~L~~ 84 (835)
.....+-.-+|.+..-.+.++.++..|+.
T Consensus 165 ~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 165 KELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444445544444444
No 117
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=38.72 E-value=1.1e+02 Score=32.66 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 33 DNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 33 d~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
+.+|..|+.+|-.+. .-+.+|-..-.++-.-+-.+..||+.|+..+.-|+++|..-+.+|+.++.
T Consensus 235 ~Gria~Le~eLAmQK-s~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 235 EGRIAELEIELAMQK-SQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred cccHHHHHHHHHHHH-hhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 356777777766553 33333333333334455556777888888888888888777766665553
No 118
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.63 E-value=2.8e+02 Score=24.76 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHH
Q 003266 108 SKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAA 150 (835)
Q Consensus 108 ~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia 150 (835)
..++.+|.++....+.+++ ........+++..+.+.|..++
T Consensus 38 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~V~e~P~~svg 78 (94)
T PF05957_consen 38 EALDDARDRAEDAADQARE--QAREAAEQTEDYVRENPWQSVG 78 (94)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHChHHHHH
Confidence 3455555555555555443 2334456677777777665544
No 119
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=38.59 E-value=9e+02 Score=30.40 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------cChHHHH
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAE----------GSSAESI 104 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e----------~~~~~~~ 104 (835)
.++-+...+....++.+.++-..+=.+++.+-++..|+..+++.+..+++++..+..+..+.- .....+-
T Consensus 42 kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~ 121 (766)
T PF10191_consen 42 KLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAAR 121 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444477778888888888888888888888876655333222 2222222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH------hhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 003266 105 AALSKVDTVKQRMEAAYETLQD------AAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAV 163 (835)
Q Consensus 105 ~~L~~LD~vK~rle~a~~~L~e------A~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l 163 (835)
..|++-|..-+-+...-++|+. |+.+..+.+.+..+-...+|++-..+|+.+++.|...
T Consensus 122 ~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~ 186 (766)
T PF10191_consen 122 ETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEAL 186 (766)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHH
Confidence 3455555544444444334432 2223333334444444567888888888888877544
No 120
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=38.20 E-value=6.3e+02 Score=31.00 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhc
Q 003266 174 KQLEVLEDRLDAMVQPRLTDALSN 197 (835)
Q Consensus 174 ~~le~l~nrLEa~v~p~l~~a~~~ 197 (835)
...+...+.||..+..-|...+..
T Consensus 498 ~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 498 KLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355566666777777777766654
No 121
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=37.89 E-value=4.7e+02 Score=28.24 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHhhc--CCHHHHHHHHHHHHHHH
Q 003266 130 LTQLSLTVEDVFAS--GDLPRAAETLANMRHCL 160 (835)
Q Consensus 130 w~~l~~~ve~l~~~--~~~~~ia~~L~~~~~sl 160 (835)
...+..++..++.. .++..+.+.|..+.+.+
T Consensus 239 l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l 271 (291)
T TIGR00996 239 LSGASAQVRDLLAENRPNLPQALANLAPVLTLL 271 (291)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44445666667653 34656555555554444
No 122
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.65 E-value=4.5e+02 Score=26.68 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q 003266 278 SFYDELLLYLEQ 289 (835)
Q Consensus 278 ~fy~~lL~~l~~ 289 (835)
.||..++..|+.
T Consensus 170 ~~y~~~~~~W~~ 181 (185)
T cd07628 170 DFYQGLVEDWEK 181 (185)
T ss_pred HHHHHHHHHHHh
Confidence 388888887764
No 123
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.27 E-value=4e+02 Score=25.91 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=44.3
Q ss_pred HHHHHhhhcCCCC--C------Cc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 003266 15 PKKWINSACQTRH--S------QD-SLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGS 85 (835)
Q Consensus 15 ~~~wIN~~~~~~~--~------~~-~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~ 85 (835)
...|||+.+-+.+ + .. ....-...++.-+..+++......+.. ..+...+-+...|++++...+..|+++
T Consensus 3 ~~~yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~-e~l~~~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 3 AIEYINQQLLSRGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQR-EDLSDKLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHHHHHHCCCCCCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4578888765432 0 01 011233344444444444444444444 444455555566777777777777777
Q ss_pred HHHHHHHHHhhhc
Q 003266 86 VSGILQKLKKAEG 98 (835)
Q Consensus 86 l~~i~~~~~~~e~ 98 (835)
+.....++..++.
T Consensus 82 ~~~~ere~~~~~~ 94 (151)
T PF11559_consen 82 LEELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666654443
No 124
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.26 E-value=1.2e+03 Score=31.64 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcCCCC
Q 003266 774 IEYLSNVLSALSVPI 788 (835)
Q Consensus 774 i~YL~NVl~aLg~~~ 788 (835)
+.|+.+.+..+|+..
T Consensus 1417 ~~~~~~l~~~~~~q~ 1431 (1486)
T PRK04863 1417 IATLFELCERLDMQL 1431 (1486)
T ss_pred HHHHHHHHHHcCCcE
Confidence 556666666666654
No 125
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.98 E-value=2.8e+02 Score=31.10 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 003266 68 ATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDA 127 (835)
Q Consensus 68 ~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA 127 (835)
..+|++.+++|..+|+++-+..++++++....-.. .-..+++.|.||.....+|++.
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~---C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDK---CSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999998888888777654333 3556677778888777777764
No 126
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.85 E-value=5.5e+02 Score=27.42 Aligned_cols=7 Identities=0% Similarity=-0.140 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 003266 279 FYDELLL 285 (835)
Q Consensus 279 fy~~lL~ 285 (835)
+|..+..
T Consensus 211 ~~~~V~~ 217 (239)
T COG1579 211 TLSKVRK 217 (239)
T ss_pred HHHHHhc
Confidence 4444444
No 127
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.73 E-value=4.1e+02 Score=25.85 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS 100 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~ 100 (835)
.|-.|+..-+.-. +....+.......-..+-+...++++++.....+...+.....+...+....
T Consensus 39 ~i~~Ll~~~~r~~-~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~ 103 (151)
T PF11559_consen 39 CIYDLLQQRDRDM-EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQL 103 (151)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444444 5555566665666666666677777777777777777777777776666543
No 128
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=36.69 E-value=4.1e+02 Score=30.55 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=34.9
Q ss_pred hhHHHHHHHhh--cCCHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 003266 132 QLSLTVEDVFA--SGDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDAL 195 (835)
Q Consensus 132 ~l~~~ve~l~~--~~~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~ 195 (835)
.|+.+|.++.+ ...+...-+-|+.|...+. |..-..+.+.++.||.+++|+.++=.....+..
T Consensus 262 rLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~-Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~ 326 (395)
T PF10267_consen 262 RLEEQLNDLTELHQNEIYNLKQELASMEEKMA-YQSYERARDIWEVMESCQTRISKLEQQQQQQVV 326 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444544422 2334455555555555532 233345667888899999998877533344443
No 129
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=36.59 E-value=3e+02 Score=24.26 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003266 37 VDLEMKLQMVSEEISASLEEQ 57 (835)
Q Consensus 37 ~~l~~kLq~~~~~l~~~le~~ 57 (835)
-..+.++.....+++..++..
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l 38 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTL 38 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 130
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=35.68 E-value=4e+02 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.436 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhc--CCHHHHHHHHHHHHH
Q 003266 107 LSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFAS--GDLPRAAETLANMRH 158 (835)
Q Consensus 107 L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~--~~~~~ia~~L~~~~~ 158 (835)
+..|..-|.+|..-...|+. -...+...+.. |+++..=..|.+.+.
T Consensus 130 i~~L~~f~~~l~~D~~~l~~------~~~~l~~~l~~~~g~I~~L~~~I~~~~~ 177 (184)
T PF05791_consen 130 INELNDFKDKLQKDSRNLKT------DVDELQSILAGENGDIPQLQKQIENLNE 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHTT--HHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHH------hHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 44455555555555544442 12333333322 445554444444443
No 131
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.61 E-value=9.1e+02 Score=29.58 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 003266 173 RKQLEVLEDRLDAMVQPRLTDAL 195 (835)
Q Consensus 173 ~~~le~l~nrLEa~v~p~l~~a~ 195 (835)
+..++.++..+.....+.+...+
T Consensus 489 ~~~l~~~~~~l~~~~~~~le~~~ 511 (650)
T TIGR03185 489 KKTLKEFREKLLERKLQQLEEEI 511 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555554443
No 132
>PLN02939 transferase, transferring glycosyl groups
Probab=35.58 E-value=1.1e+03 Score=30.49 Aligned_cols=151 Identities=18% Similarity=0.273 Sum_probs=88.1
Q ss_pred hhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhh-------chhHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 32 LDNHLVDLEMKLQMV-------------SEEISASLEEQSASALLRV-------PRATRDVVRLRDDAISLRGSVSGILQ 91 (835)
Q Consensus 32 ld~~i~~l~~kLq~~-------------~~~l~~~le~~~~~~l~~~-------Pr~~~dve~~~~ea~~L~~~l~~i~~ 91 (835)
|...|..|+|+|-.- .+=+...||..-++++.++ ..+..++..+++|-..|++.+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (977)
T PLN02939 168 LQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA 247 (977)
T ss_pred HHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556777777777662 1122334455544544433 33677888889888889888888888
Q ss_pred HHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC--CHHHHHHHHHHHHHHHhhcccc---
Q 003266 92 KLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASG--DLPRAAETLANMRHCLSAVGEV--- 166 (835)
Q Consensus 92 ~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~--~~~~ia~~L~~~~~sl~~l~~~--- 166 (835)
++..+. ++-..+..|.+-++-|+++..-|.- .+...=+++.+-+ .|+..-++++.++..|.-..+-
T Consensus 248 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (977)
T PLN02939 248 ELIEVA----ETEERVFKLEKERSLLDASLRELES-----KFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEK 318 (977)
T ss_pred HHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876554 3445677788888888887766652 2222222222222 2344455555555555332221
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHhHHHH
Q 003266 167 -----AEFANIRKQLEVLEDRLDAMVQPRL 191 (835)
Q Consensus 167 -----p~~~~r~~~le~l~nrLEa~v~p~l 191 (835)
....+.+.++++|+..|++..-..|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (977)
T PLN02939 319 AALVLDQNQDLRDKVDKLEASLKEANVSKF 348 (977)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHhhh
Confidence 1334566677777666666554444
No 133
>PRK02224 chromosome segregation protein; Provisional
Probab=35.50 E-value=1e+03 Score=30.15 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=6.8
Q ss_pred CHHHHHhhhcC
Q 003266 14 DPKKWINSACQ 24 (835)
Q Consensus 14 D~~~wIN~~~~ 24 (835)
++..||...++
T Consensus 113 ~~~~~i~~llg 123 (880)
T PRK02224 113 DVREEVTELLR 123 (880)
T ss_pred HHHHHHHHHHC
Confidence 45567776654
No 134
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=35.38 E-value=3.2e+02 Score=26.23 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 003266 171 NIRKQLEVLEDRLDA 185 (835)
Q Consensus 171 ~r~~~le~l~nrLEa 185 (835)
..+++++.+...++.
T Consensus 119 ~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 119 KLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 135
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=34.76 E-value=1.2e+03 Score=30.59 Aligned_cols=157 Identities=12% Similarity=0.220 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhhcCh------HHHHHHHHhHHHHH-----HHHHHHHHHHHHhhhhhhhHH--
Q 003266 72 VVRLRDDAISLRGSVSGILQKL---KKAEGSS------AESIAALSKVDTVK-----QRMEAAYETLQDAAGLTQLSL-- 135 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~~i~~~~---~~~e~~~------~~~~~~L~~LD~vK-----~rle~a~~~L~eA~~w~~l~~-- 135 (835)
++.-|.++.+...+|...=+-- .+.+.+. .+.-+++.+||-.. ++++..+++|++-+.++++..
T Consensus 414 w~~~k~~~~~~m~eLa~~Fsg~~~L~~~~~n~~L~~Wf~~~~~~i~~Ld~~~~~~agrkI~qliqaLeeV~efhql~~nl 493 (1081)
T PF10266_consen 414 WEECKKEASERMQELAEFFSGTKPLTRIEKNENLQQWFREMSKQIESLDYEDSTKAGRKIQQLIQALEEVQEFHQLSSNL 493 (1081)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccccchhHHHHHHHHHHHHHhccccccchHhHHHHHHHHHHHHHHHHhCcccch
Confidence 5556666666655555443311 1111111 34444677766544 678888888998888888885
Q ss_pred HHHHHhhc-C-CHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003266 136 TVEDVFAS-G-DLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRI 213 (835)
Q Consensus 136 ~ve~l~~~-~-~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i 213 (835)
+|.+.+.+ + .+....+.+.-=...+..+..+.|+.--+..+..|...+++.+.. |+..+-.++.+|-.+
T Consensus 494 qvkq~l~etr~~L~~M~r~~ni~e~~l~~l~~i~D~SYaW~li~~~~~~mQ~~Ik~---------~P~~v~~lRa~FlKL 564 (1081)
T PF10266_consen 494 QVKQFLQETRQLLHQMIRTINIKEEVLITLQIISDFSYAWELIDSYTPIMQQRIKK---------DPSTVIKLRATFLKL 564 (1081)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCcHHHHhHhHhhhhhhHHHHHHHHHHHHHHHHHhc---------CChHHHHHHHHHHHH
Confidence 44444332 1 122222222211222234455667777888888888888877642 322222233333221
Q ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHHH
Q 003266 214 ----------------GRFKSLELHYTKVHLKYIKQLWEE 237 (835)
Q Consensus 214 ----------------~R~~~l~~~Y~~~~~~~l~~~W~~ 237 (835)
.....+-+||...-.+.++++-+-
T Consensus 565 aS~L~~pl~Ri~Q~~s~Dl~sVS~yYS~eLv~~vR~VLqi 604 (1081)
T PF10266_consen 565 ASALELPLLRINQAESPDLSSVSQYYSSELVKYVRKVLQI 604 (1081)
T ss_pred HHHhccHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 235678889988877777666555
No 136
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=34.60 E-value=1e+03 Score=29.97 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 75 LRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 75 ~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
=.....+|...+..+.+++....++-......+.+++++-+++.+.+..|+
T Consensus 63 e~~~n~~Lsq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~eq~~~lr 113 (835)
T COG3264 63 ELAINDQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLR 113 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455666666666666665555444444456666666666666655555
No 137
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.14 E-value=5.2e+02 Score=26.27 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSAS 60 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~~ 60 (835)
..-++...+..+++++...+ ..+..
T Consensus 58 vh~pll~~~~~~~~~~~~~l-~~~~~ 82 (204)
T PF04740_consen 58 VHIPLLQGLILLLEEYQEAL-KFIKD 82 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHH
Confidence 34445556666666666666 44443
No 138
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=34.11 E-value=3.5e+02 Score=24.31 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHH
Q 003266 106 ALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGE-VAEFANIRKQLEVLEDRLD 184 (835)
Q Consensus 106 ~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~-~p~~~~r~~~le~l~nrLE 184 (835)
....++..+..|..++..++ | +|+ .+-+.+..+.+.-.-|.- -.+...|+..+..+++++.
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie----~-----~L~---------DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIE----W-----DLE---------DLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHH----H-----HHH---------HHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHH----H-----HHH---------HHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777776666 3 122 122222222222233311 1256789999999999887
Q ss_pred HH
Q 003266 185 AM 186 (835)
Q Consensus 185 a~ 186 (835)
.+
T Consensus 95 ~~ 96 (97)
T PF09177_consen 95 QM 96 (97)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 139
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=33.07 E-value=5.5e+02 Score=26.28 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=78.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChH-HHHHHHHhHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHH
Q 003266 64 RVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSA-ESIAALSKVDTVKQRMEAAYETLQDAA--GLTQLSLTVEDV 140 (835)
Q Consensus 64 ~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~-~~~~~L~~LD~vK~rle~a~~~L~eA~--~w~~l~~~ve~l 140 (835)
..+....++..+..++..++.++..-..+. -+-+..+ .+..-+..+|.+=.-++.+...|.--. ....+...+..+
T Consensus 41 ~~~~~~~~i~~lE~~aD~i~~~i~~~L~~~-fitP~dRedi~~L~~~lD~I~d~i~~~a~~l~~~~~~~~~~~~~~~~~l 119 (214)
T PF01865_consen 41 DVEELLEEIKELEHEADEIKREIREELYKS-FITPFDREDILRLISSLDDIADYIEDAAKRLSLYKVEIPEELREEFQEL 119 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHH
Confidence 344555666666666666666665333221 0111122 456667777777666666665444100 001122222222
Q ss_pred hhcCCHHHHHHHHHHHHHHHhhcccch--hHH--HHHHHHHHHHHHHHHHhHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 003266 141 FASGDLPRAAETLANMRHCLSAVGEVA--EFA--NIRKQLEVLEDRLDAMVQPRLTDALSNR---KIDIARDLRGILIRI 213 (835)
Q Consensus 141 ~~~~~~~~ia~~L~~~~~sl~~l~~~p--~~~--~r~~~le~l~nrLEa~v~p~l~~a~~~~---~~~~~~~~~~il~~i 213 (835)
+..+......+...+..+...+ .++ +.+..+..++++....-......-|... |+-..-++.+++..+
T Consensus 120 -----~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~I~~~E~~~D~l~~~~~~~lf~~~~~~d~~~~~~~~ei~~~l 194 (214)
T PF01865_consen 120 -----AEIVVEAIEELVEAIEELKSILESSFEEKELIKEINKLEEEADKLYRRLIKKLFSNEDEMDPIEIIKLKEIYEHL 194 (214)
T ss_dssp -----HHHHHHHHHHHHHHHCCCCCCCCS-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 2244444555555556666543 344 5788899999998888888888888743 444444455555555
Q ss_pred cc
Q 003266 214 GR 215 (835)
Q Consensus 214 ~R 215 (835)
+.
T Consensus 195 e~ 196 (214)
T PF01865_consen 195 ED 196 (214)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 140
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=32.88 E-value=9e+02 Score=28.71 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH---HHHHHHHHHH--HHHHHHHhhhcChHHHHHHHHh
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRD---DAISLRGSVS--GILQKLKKAEGSSAESIAALSK 109 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~---ea~~L~~~l~--~i~~~~~~~e~~~~~~~~~L~~ 109 (835)
++..|+.-+..=+.++...+...........|-+..|++.-+. ....|.++|. .|+.-+.-++..-..++.....
T Consensus 4 ~~~~le~~v~~W~~qI~~vl~~~~~~~~~~~~~p~~Ei~fW~~r~~~L~~i~~QL~s~~v~~~~~iL~~~~s~~~~~f~~ 83 (579)
T PF08385_consen 4 FLNSLESIVIQWIKQIQKVLSLSSDPRSGDNPGPLDEIEFWRSREENLSSIYEQLKSPEVQKILEILEKAKSSYTKSFKN 83 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHhcchhhHHHHH
Confidence 4555556565666666666555533322234667777777443 3444444443 2222222222211245556666
Q ss_pred HH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHH-hhcccchhH--HHHH-HHHHHHHHHHH
Q 003266 110 VD-TVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCL-SAVGEVAEF--ANIR-KQLEVLEDRLD 184 (835)
Q Consensus 110 LD-~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl-~~l~~~p~~--~~r~-~~le~l~nrLE 184 (835)
+. .++..+..|.+..+ .+..+..-.+.+ ...++.++.+.|..+-..+ .+|...+-| .+|. ..++.+.|.+=
T Consensus 84 ~~~~l~~~~~ea~d~~~---fL~~l~~~~~~l-~~~~~~~i~~~i~~l~~~l~~iw~~S~~y~~~~R~~~Ll~~isn~ii 159 (579)
T PF08385_consen 84 LTRELKEALNEAKDNNK---FLKPLEPPFELL-EASDLSEIQESIPPLFHHLRLIWRISRYYYPPERMTSLLEKISNQII 159 (579)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHH
Confidence 66 66666666666555 344444444444 7789999999999999999 677776633 2333 36677666665
Q ss_pred HHhHHHH
Q 003266 185 AMVQPRL 191 (835)
Q Consensus 185 a~v~p~l 191 (835)
..+...+
T Consensus 160 ~~~~~~l 166 (579)
T PF08385_consen 160 QKCQKYL 166 (579)
T ss_pred HHHHHHh
Confidence 5554444
No 141
>PRK10807 paraquat-inducible protein B; Provisional
Probab=32.78 E-value=4.7e+02 Score=31.51 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHH
Q 003266 147 PRAAETLANMRHCLSAV-GEVAEFANIRKQLEVLEDRLD 184 (835)
Q Consensus 147 ~~ia~~L~~~~~sl~~l-~~~p~~~~r~~~le~l~nrLE 184 (835)
..+.+.|.++++.|..+ .+.|-|.+.++.++.++..+.
T Consensus 476 ~~L~~TL~~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r 514 (547)
T PRK10807 476 ADMQKTLRELNRSMQGFQPGSPAYNKMVADMQRLDQVLR 514 (547)
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHH
Confidence 34455566666665544 356667776666666655443
No 142
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=32.78 E-value=2e+02 Score=28.79 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhh-----hhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccchh--HHHHHHHHHHHHHHHHHHh
Q 003266 116 RMEAAYETLQDAA-----GLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAE--FANIRKQLEVLEDRLDAMV 187 (835)
Q Consensus 116 rle~a~~~L~eA~-----~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~--~~~r~~~le~l~nrLEa~v 187 (835)
-++.+.++|++-. +|+...++-++.+++||+-.+|.-+..+-+- ..-++ |.+| +.+++..++|...+
T Consensus 68 ~l~~~~~vlq~~~~e~~~~ws~R~k~~~~klksGdi~~~AevvrdL~r~----~~qr~l~~~Er-~ll~~A~~~l~~El 141 (166)
T COG1329 68 ELDRALQVLQGGEREKPTMWSRRYKENEEKLKSGDIIDIAEVVRDLYRR----DKQRELSYSER-RLLEKALQILAGEL 141 (166)
T ss_pred HHHHHHHHHhccCccccccHHHHHHHHHHHhccCChhHHHHHHHHHHHh----hcccCCChHHH-HHHHHHHHHHHHHH
Confidence 3455666776544 7999999999999999999998888777665 44443 3333 45666666666654
No 143
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=32.50 E-value=2.3e+02 Score=26.35 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRAT--RDVVRLRDDAISLRGSVSGILQKL 93 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~--~dve~~~~ea~~L~~~l~~i~~~~ 93 (835)
.+++.|+.+.+...-++..-+...++.++...- +. .+++.+++++..|.+++..+.++.
T Consensus 46 ~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~-~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 46 RFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLE-VARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhcc-ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888877776666666666666654432 11 245567777777777777776654
No 144
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.47 E-value=4.4e+02 Score=24.92 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLAN 155 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~ 155 (835)
....+...|+.-+++.+.+..-|.....=+.....|=.+|=..+..++-..|..
T Consensus 25 ~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~ 78 (121)
T PRK09343 25 RLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKE 78 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHH
Confidence 344466666666666666666666544434555566666655565555444443
No 145
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=31.96 E-value=1.1e+02 Score=24.83 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLR 64 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~ 64 (835)
|..++.+|+.++|-..+.++.+|-..+++.-++
T Consensus 4 lt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~R 36 (54)
T PF06825_consen 4 LTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSR 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456888888888888888888877776666665
No 146
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=31.54 E-value=5.6e+02 Score=33.00 Aligned_cols=107 Identities=20% Similarity=0.334 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHH-H---HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHH
Q 003266 43 LQMVSEEISASLEEQS-A---SALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRME 118 (835)
Q Consensus 43 Lq~~~~~l~~~le~~~-~---~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle 118 (835)
|+.++ +...+|+..- . ++++++|.= .|+.. --.+|++++..+++++..+..- -.+..+..-.++|.|++
T Consensus 1030 L~~L~-qCqdALeKqnIa~AL~ALn~IPSd-KEms~---Is~eLReQIq~~KQ~LesLQRA--V~TPVvtd~eKvr~rYe 1102 (1439)
T PF12252_consen 1030 LQALT-QCQDALEKQNIAGALQALNNIPSD-KEMSK---ISSELREQIQSVKQDLESLQRA--VVTPVVTDAEKVRVRYE 1102 (1439)
T ss_pred HHHHH-HHHHHHHhhhHHHHHHHHhcCCch-hhhhh---hhHHHHHHHHHHHHHHHHHHHh--hcccccccHHHHHHHHH
Confidence 44333 5666666542 2 444555542 22333 4457888998888886555421 11225667778888888
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHh-----hcCCHHHHHHHHHHHHHHHhhccc
Q 003266 119 AAYETLQDAAGLTQLSLTVEDVF-----ASGDLPRAAETLANMRHCLSAVGE 165 (835)
Q Consensus 119 ~a~~~L~eA~~w~~l~~~ve~l~-----~~~~~~~ia~~L~~~~~sl~~l~~ 165 (835)
.-+..+. ++|.++= ....|.+.-..|..|++.+.+|++
T Consensus 1103 ~LI~~iT---------KrIt~LEk~k~~~l~~ikK~ia~lnnlqqElklLRn 1145 (1439)
T PF12252_consen 1103 TLITDIT---------KRITDLEKAKLDNLDSIKKAIANLNNLQQELKLLRN 1145 (1439)
T ss_pred HHHHHHH---------HHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766554 3444442 223588888899999999988743
No 147
>PRK00846 hypothetical protein; Provisional
Probab=31.53 E-value=2.1e+02 Score=25.08 Aligned_cols=51 Identities=24% Similarity=0.209 Sum_probs=24.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGIL 90 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~ 90 (835)
++.+|..|++||--+- ..|+++.+.+.+ --+.+++++..+..|.+++..+.
T Consensus 11 le~Ri~~LE~rlAfQe----~tIe~LN~~v~~----qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQE----QALTELSEALAD----ARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677778877764332 223333221111 13445555555555555555544
No 148
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.29 E-value=1.1e+03 Score=29.34 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 003266 146 LPRAAETLANMRHCL 160 (835)
Q Consensus 146 ~~~ia~~L~~~~~sl 160 (835)
+...+.+|..++.-+
T Consensus 648 l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 648 LQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 149
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=31.17 E-value=1.1e+03 Score=29.31 Aligned_cols=53 Identities=17% Similarity=0.390 Sum_probs=29.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 003266 136 TVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALS 196 (835)
Q Consensus 136 ~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~ 196 (835)
.|++++.+-+ +-++++.++..+.--+.+|+.+.. ..||+|+.++. ..+.+|++
T Consensus 661 kIe~av~ss~---LK~k~E~Lk~Evaka~~~pd~~~k-~kieal~~qik----~~~~~a~~ 713 (762)
T PLN03229 661 KIERVIRSSD---LKSKIELLKLEVAKASKTPDVTEK-EKIEALEQQIK----QKIAEALN 713 (762)
T ss_pred HHHHHhcchh---HHHHHHHHHHHHHhcCCCCCcchH-HHHHHHHHHHH----HHHHHHhc
Confidence 4444454444 334444555544444778888776 67777655544 44455553
No 150
>PRK11637 AmiB activator; Provisional
Probab=31.01 E-value=8.7e+02 Score=27.98 Aligned_cols=30 Identities=0% Similarity=0.117 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
..++..+..++..++.+|..+..++.+.+.
T Consensus 81 ~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 81 EEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433
No 151
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=31.00 E-value=3e+02 Score=31.39 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=59.8
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhc
Q 003266 64 RVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFAS 143 (835)
Q Consensus 64 ~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~ 143 (835)
.-.|+.+.|+.++-+...|.+-+..-+++..++| +|+.+|+ .+--..-.+..+|+.|++..+
T Consensus 133 kt~~vnQHVq~LQseCsvlsEnLErrrQEaeELE----gyCsqLk------~nCrkVt~SVedaEiKtnvLk-------- 194 (558)
T PF15358_consen 133 KTSRVNQHVQTLQSECSVLSENLERRRQEAEELE----GYCSQLK------ENCRKVTRSVEDAEIKTNVLK-------- 194 (558)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHH----HHHHHHH------HHHHHHhhhHHHHHHHhcccc--------
Confidence 3446677788899999999999998888888887 5787776 222222233444444444333
Q ss_pred CCHHHHHHHHHHHHHHHh-hccc-chhHHHHHHHHHHHHHHHHHHhHHH
Q 003266 144 GDLPRAAETLANMRHCLS-AVGE-VAEFANIRKQLEVLEDRLDAMVQPR 190 (835)
Q Consensus 144 ~~~~~ia~~L~~~~~sl~-~l~~-~p~~~~r~~~le~l~nrLEa~v~p~ 190 (835)
.-+..|++=-+.|. .+++ +|. .....++.|+.+||+-++..
T Consensus 195 ----qnS~~LEekLr~lq~qLqdE~pr--rqe~e~qELeqkleagls~~ 237 (558)
T PF15358_consen 195 ----QNSALLEEKLRYLQQQLQDETPR--RQEAEWQELEQKLEAGLSRS 237 (558)
T ss_pred ----cchHHHHHHHHHHHHHhcccCcc--hhhhhHHHHHHHHhhhhhhc
Confidence 22333333222221 1222 221 11236888888998877654
No 152
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.81 E-value=1.3e+03 Score=29.94 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh----HHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 003266 59 ASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS----AESIAALSKVDTVKQRMEAAYETLQDAA 128 (835)
Q Consensus 59 ~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~----~~~~~~L~~LD~vK~rle~a~~~L~eA~ 128 (835)
.-.-..+|++-..++.....+..++.++..+..++.+.-..+ .++....+.+|..|+++.....-.+++.
T Consensus 291 ~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 291 KKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIE 364 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666666666666666665554433 3444455666666665555555555443
No 153
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=30.21 E-value=4.7e+02 Score=24.64 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHH
Q 003266 202 IARDLRGILIRIGRFKSLELHYTKVHL 228 (835)
Q Consensus 202 ~~~~~~~il~~i~R~~~l~~~Y~~~~~ 228 (835)
.+..++.++...||......+|..++.
T Consensus 98 ~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 98 AYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455567888888998999888887764
No 154
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=29.98 E-value=4.6e+02 Score=24.44 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHH
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAE 102 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~ 102 (835)
.+.+|..+++..-+++..+- +..-.+-+..-+.++.+...+..|...+..+++++.++.+.|.+
T Consensus 9 q~~~l~~~v~~lRed~r~SE----drsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~d 72 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSE----DRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDD 72 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHH
Confidence 34444444444444444332 22234455667778888899999999999999999888876654
No 155
>PF15456 Uds1: Up-regulated During Septation
Probab=29.97 E-value=5e+02 Score=24.82 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhH
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKV 110 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~L 110 (835)
..||+.++.+...|..++..++.++. ++....+.-..|.++
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 46888899999999999988888887 666555555555555
No 156
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.91 E-value=7.6e+02 Score=26.90 Aligned_cols=100 Identities=12% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHH
Q 003266 36 LVDLEMKLQMVSEEISASLEEQSASALLR-VPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVK 114 (835)
Q Consensus 36 i~~l~~kLq~~~~~l~~~le~~~~~~l~~-~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK 114 (835)
+.+++.|.+.+- +-|..|+..+...... .+.....-..+..++..|+..|..+..+-.+++...... -..++..|
T Consensus 13 la~YIekVr~LE-~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l---~~e~~~~r 88 (312)
T PF00038_consen 13 LASYIEKVRFLE-QENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL---KEELEDLR 88 (312)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH---HHHHHHHH
Confidence 333333333332 3455666666655555 444555555678888888888877776666665443332 23344445
Q ss_pred HHHHHHHHHHHHh-hhhhhhHHHHHH
Q 003266 115 QRMEAAYETLQDA-AGLTQLSLTVED 139 (835)
Q Consensus 115 ~rle~a~~~L~eA-~~w~~l~~~ve~ 139 (835)
.|.+........+ ..+..+..++++
T Consensus 89 ~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 89 RKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5555444443333 134444444443
No 157
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.89 E-value=8.6e+02 Score=28.17 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhchhH
Q 003266 39 LEMKLQMVSEEISASLEEQSA---SALLRVPRAT 69 (835)
Q Consensus 39 l~~kLq~~~~~l~~~le~~~~---~~l~~~Pr~~ 69 (835)
=..+|+.+++.++.++++... +.++.+||-+
T Consensus 241 ~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~i 274 (439)
T KOG2911|consen 241 ARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQI 274 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 345666666666666665532 3444444443
No 158
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.84 E-value=8.1e+02 Score=27.22 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHH
Q 003266 43 LQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLR-GSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAY 121 (835)
Q Consensus 43 Lq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~-~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~ 121 (835)
|..+|.+-..-+.+...+....-|-+.+|--....+...|. .++..|+.-. .+++...=|-=+.+-++..|..++.-+
T Consensus 75 L~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~a-Rl~ak~~WYeWR~kllegLk~~L~~~~ 153 (312)
T smart00787 75 LKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFA-RLEAKKMWYEWRMKLLEGLKEGLDENL 153 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666777788888887766555554443 4555554432 222211111114555777777777777
Q ss_pred HHHHH
Q 003266 122 ETLQD 126 (835)
Q Consensus 122 ~~L~e 126 (835)
+.|++
T Consensus 154 ~~l~~ 158 (312)
T smart00787 154 EGLKE 158 (312)
T ss_pred HHHHH
Confidence 77775
No 159
>PRK02224 chromosome segregation protein; Provisional
Probab=29.21 E-value=1.3e+03 Score=29.30 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=18.3
Q ss_pred hhHHHHHHH---hhcCCHHHHHHHHHHHHHHHhhc
Q 003266 132 QLSLTVEDV---FASGDLPRAAETLANMRHCLSAV 163 (835)
Q Consensus 132 ~l~~~ve~l---~~~~~~~~ia~~L~~~~~sl~~l 163 (835)
.+...++.+ +...++..+..++......+..+
T Consensus 631 ~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l 665 (880)
T PRK02224 631 EKRERKRELEAEFDEARIEEAREDKERAEEYLEQV 665 (880)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 45556666666666666666544
No 160
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=28.75 E-value=7.6e+02 Score=26.57 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 003266 150 AETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNR 198 (835)
Q Consensus 150 a~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~ 198 (835)
...+..++..+.-+..+ ..+|...++.+++.++....|.+..+++..
T Consensus 140 ~~~i~~L~~ll~~l~~l--~~eR~~~~~~lk~~~~~d~i~~~l~~~~~~ 186 (296)
T PF13949_consen 140 SEVIRQLRELLNKLEEL--KKEREELLEQLKEKLQNDDISKLLSELNKN 186 (296)
T ss_dssp -HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhccHHHHHHHhhcc
Confidence 33444444443333322 346888999999999999999999988754
No 161
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.70 E-value=2.7e+02 Score=24.02 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=26.8
Q ss_pred chhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 31 SLDNHLVDLEMKLQMV---SEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQ 91 (835)
Q Consensus 31 ~ld~~i~~l~~kLq~~---~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~ 91 (835)
.++.+|..|++|+--+ ++++|..|.+. -..+++++.....|-+++..++.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq-----------~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQ-----------QLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhcc
Confidence 4678888888887544 33444443333 33344555555555554444443
No 162
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=28.67 E-value=1.2e+03 Score=32.64 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhH
Q 003266 166 VAEFANIRKQLEVLEDRLDAMVQ 188 (835)
Q Consensus 166 ~p~~~~r~~~le~l~nrLEa~v~ 188 (835)
+....+...+++..+..||..+.
T Consensus 1760 l~~Eq~~~~~le~~k~~LE~~~k 1782 (1930)
T KOG0161|consen 1760 LRKEQETSQKLERLKKSLERQVK 1782 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777777665
No 163
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.45 E-value=1.1e+03 Score=28.33 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 003266 171 NIRKQLEVLEDRLDA 185 (835)
Q Consensus 171 ~r~~~le~l~nrLEa 185 (835)
..+.+|...+++|++
T Consensus 287 ~LkeqLr~~qe~lqa 301 (546)
T PF07888_consen 287 ALKEQLRSAQEQLQA 301 (546)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 164
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=28.06 E-value=6.4e+02 Score=28.22 Aligned_cols=103 Identities=8% Similarity=-0.004 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHhhcCCHHHH
Q 003266 71 DVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSL-TVEDVFASGDLPRA 149 (835)
Q Consensus 71 dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~-~ve~l~~~~~~~~i 149 (835)
.+.+++.++..|+++|..=+.- .. -.+.+....++..++....+++.-.....++..|-.... .| ..+
T Consensus 18 ~l~~~~~~l~~lq~qlsTGk~~-d~-~s~~~~~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~~~aL---------~~v 86 (348)
T PRK06008 18 TIAKLQAELSKAQTEATTGRYA-DV-GLSLGSKTARSVSLRREYDRLASLTDSNSLVTQRLTATQTAL---------GQI 86 (348)
T ss_pred HHHHHHHHHHHHHHHHhcCccc-cc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 3444555555555555422211 00 011234455777788888888888888888888855543 33 366
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 003266 150 AETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAM 186 (835)
Q Consensus 150 a~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~ 186 (835)
...+..+++.+.. +...-++|...-..++..++.+
T Consensus 87 ~~~~~~~~~~l~~--~~~~~~~~~aia~e~~~~~~~l 121 (348)
T PRK06008 87 IEAAQSFLNDLLA--ANSSAQTAATVAQSARSALSSL 121 (348)
T ss_pred HHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHH
Confidence 7777777775543 2333345555555555544443
No 165
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=27.96 E-value=7.2e+02 Score=26.06 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh-------HHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 70 RDVVRLRDDAISLRGSVSGILQKLKKAEGSS-------AESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 70 ~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~-------~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
.+++.+..++..+.++=..+++++...-... ..++.-++.+|.+=-.++.+...+.
T Consensus 42 ~~~e~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~l~ 104 (217)
T COG1392 42 EDAEELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKLLL 104 (217)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555555553333221 3556667777766555555554444
No 166
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.92 E-value=1.1e+03 Score=27.96 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003266 78 DAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQ 125 (835)
Q Consensus 78 ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~ 125 (835)
++..-+..|+.|.+++.++...-..++..|.++ -+++++..+.+|+
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~--k~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADAVAKIEEA--KNRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHH
Confidence 344444455555555554442222222233222 1233444555555
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.90 E-value=7.1e+02 Score=25.93 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQS 58 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~ 58 (835)
+.+...+-+|+...+++...+.+..
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666665555543
No 168
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=27.89 E-value=1.1e+03 Score=28.13 Aligned_cols=119 Identities=15% Similarity=0.281 Sum_probs=57.8
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChH---HHHH-HHHhHHHHHHHHHHHHHHHHHh-hhhhhhHHHHH
Q 003266 64 RVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSA---ESIA-ALSKVDTVKQRMEAAYETLQDA-AGLTQLSLTVE 138 (835)
Q Consensus 64 ~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~---~~~~-~L~~LD~vK~rle~a~~~L~eA-~~w~~l~~~ve 138 (835)
.+.++..|+..++..+..|+..|..++.++..+..... ..+. --.+|+..|.+++.+...-.++ ..+..+...|+
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lq 375 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQ 375 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 34444555555555555555555555555544443221 1122 3456677777777776666655 23555555555
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 003266 139 DVFASGDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAM 186 (835)
Q Consensus 139 ~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~ 186 (835)
.+-..-+ .+-.....++.-+..++ .+++..+..+...+.||++.
T Consensus 376 ql~~Eae--~Ak~ea~~~~~E~~~~k--~E~e~~ka~i~t~E~rL~aa 419 (522)
T PF05701_consen 376 QLSSEAE--EAKKEAEEAKEEVEKAK--EEAEQTKAAIKTAEERLEAA 419 (522)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4433321 11122222222221111 14555666666666666655
No 169
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.69 E-value=3.8e+02 Score=27.08 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAE 97 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e 97 (835)
..++....+|.....+...+++..+.++-.. ..-+|.++..+..|+++-.-+..++..|+
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~----i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKE----IQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544443 33344455555555555554444444443
No 170
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.57 E-value=1.9e+02 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 61 ALLRVPRATRDVVRLRDDAISLRGSVSGILQKL 93 (835)
Q Consensus 61 ~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~ 93 (835)
+...+|+..-.+..++.+...+++.+..+.+.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555554444
No 171
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.22 E-value=1e+03 Score=28.06 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=9.6
Q ss_pred CCCHHHHHhhhcCCCCC
Q 003266 12 KFDPKKWINSACQTRHS 28 (835)
Q Consensus 12 ~FD~~~wIN~~~~~~~~ 28 (835)
..|+..|=.+...+.++
T Consensus 309 gVd~~~W~QA~~dnp~s 325 (508)
T KOG3091|consen 309 GVDQRIWRQAMKDNPPS 325 (508)
T ss_pred CcCHHHHHHHhhcCCCc
Confidence 45667776665444443
No 172
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=27.16 E-value=1e+03 Score=27.48 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh---hhchh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSA------SALL---RVPRA----TRDVVRLRDDAISLRGSVSGILQKLKKAEGSS 100 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~------~~l~---~~Pr~----~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~ 100 (835)
+.++++..-++.+.+++-.-|+..++ -+++ +.|-. ..-++.+.+++.+|-+=+..+++.+..++...
T Consensus 192 ~~~~~i~~~l~~le~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~ 271 (412)
T PF04108_consen 192 PLMSTILKELHSLEQEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNE 271 (412)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666777777776654 2222 12222 23456688899999888888888887777654
Q ss_pred HH----HHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 003266 101 AE----SIAALSKVDTVKQRMEAAYETLQDAAG 129 (835)
Q Consensus 101 ~~----~~~~L~~LD~vK~rle~a~~~L~eA~~ 129 (835)
.. .......+..+...+..+...|.....
T Consensus 272 ~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 304 (412)
T PF04108_consen 272 ERTKKLLQSQRDHIRELYNALSEALEELRKFGE 304 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 333445555555555555555554433
No 173
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=27.02 E-value=8.4e+02 Score=28.78 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=12.8
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 65 VPRATRDVVRLRDDAISLRGSVSGILQ 91 (835)
Q Consensus 65 ~Pr~~~dve~~~~ea~~L~~~l~~i~~ 91 (835)
-|....-+..++.+...|..+|..++.
T Consensus 139 ~~Dp~~Ri~~Le~e~~~i~~EI~~l~a 165 (478)
T PF11855_consen 139 DPDPERRIAELEREIAEIDAEIDRLEA 165 (478)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344444455555555555544444433
No 174
>PF13514 AAA_27: AAA domain
Probab=26.80 E-value=1.6e+03 Score=29.58 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 003266 148 RAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMV 187 (835)
Q Consensus 148 ~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v 187 (835)
.+...+..++..+..+.+-.++.+.....+..+.+|+..+
T Consensus 914 ~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~ 953 (1111)
T PF13514_consen 914 ELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELA 953 (1111)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443444444444444444444443
No 175
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=26.62 E-value=9.2e+02 Score=26.83 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--cChHHHHHHHHhHHHHHH-HHHHHHHHHHH
Q 003266 72 VVRLRDDAISLRGSVSGILQKLKKAE--GSSAESIAALSKVDTVKQ-RMEAAYETLQD 126 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~~i~~~~~~~e--~~~~~~~~~L~~LD~vK~-rle~a~~~L~e 126 (835)
+..-.+.+..|.++|..+..++.++- .++.+++..+.++..+|. +.+.+...-..
T Consensus 117 ~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~ 174 (319)
T KOG0796|consen 117 AARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNT 174 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33346778888888988888887765 567888898999998887 55555544443
No 176
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=26.54 E-value=5.7e+02 Score=27.68 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=26.5
Q ss_pred HHHHHHhhcCC--------HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh
Q 003266 135 LTVEDVFASGD--------LPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMV 187 (835)
Q Consensus 135 ~~ve~l~~~~~--------~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v 187 (835)
.++.+.|+..+ +..+++.+..+...+..=+..+.-.+....++++++.++..-
T Consensus 196 ~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~ 256 (284)
T PF12805_consen 196 EELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLR 256 (284)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 45555555433 344444555554444322333333445566777777666543
No 177
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=26.47 E-value=6e+02 Score=24.57 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHH
Q 003266 40 EMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEA 119 (835)
Q Consensus 40 ~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~ 119 (835)
+..++...+.+-.+.++....-+.- --+++..|.++..+...+..+.............. ..=-..+.++.+|+.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~----~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~ 103 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSL----EPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQA 103 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHH
Confidence 3334444444444444444433333 23355566666666666666666655555432222 223344556666666
Q ss_pred HHHHHH
Q 003266 120 AYETLQ 125 (835)
Q Consensus 120 a~~~L~ 125 (835)
+..-..
T Consensus 104 ~~~e~e 109 (150)
T PF07200_consen 104 AASEAE 109 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=26.45 E-value=8.4e+02 Score=26.28 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=12.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHH
Q 003266 137 VEDVFASGDLPRAAETLANMR 157 (835)
Q Consensus 137 ve~l~~~~~~~~ia~~L~~~~ 157 (835)
+.-+++.|+|.++...+..+-
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl 170 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFV 170 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 333466788887666644433
No 179
>PLN02372 violaxanthin de-epoxidase
Probab=26.40 E-value=6.2e+02 Score=29.16 Aligned_cols=10 Identities=10% Similarity=0.448 Sum_probs=5.3
Q ss_pred HhhhcCCCCC
Q 003266 19 INSACQTRHS 28 (835)
Q Consensus 19 IN~~~~~~~~ 28 (835)
+++.|..+++
T Consensus 352 tDNsCgpep~ 361 (455)
T PLN02372 352 TDNTCGPEPP 361 (455)
T ss_pred eCCCCCCCch
Confidence 4455555554
No 180
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=26.33 E-value=7.4e+02 Score=25.61 Aligned_cols=12 Identities=8% Similarity=-0.064 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q 003266 278 SFYDELLLYLEQ 289 (835)
Q Consensus 278 ~fy~~lL~~l~~ 289 (835)
.||..++.+|+.
T Consensus 184 ~~~~~~~~~W~~ 195 (201)
T cd07622 184 KLAKKGLQTWTN 195 (201)
T ss_pred HHHHHHHHHHHH
Confidence 377777777763
No 181
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=26.30 E-value=2e+03 Score=30.60 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQ 57 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~ 57 (835)
++...-.||.....++...+++.
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e 1032 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLERE 1032 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 182
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=26.24 E-value=1.3e+03 Score=28.53 Aligned_cols=182 Identities=10% Similarity=0.068 Sum_probs=97.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhcCCchh---chHHHHHHHHHHhhhccHHHHHhhhhCCCCchhhhhhhhhhhhc
Q 003266 271 MFSSWLPSFYDELLLYLEQEWKWCMVAFPDDYR---TLVPKLLVETMASVGGSFVSRINLATGDFVPETKALSKGILDIL 347 (835)
Q Consensus 271 ~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~~~~---~l~~~ll~~~~~~l~~si~~~l~~~~~~a~~~~~~~~~~~~~~~ 347 (835)
.+.+.|..+-.++......|....+.+|..-++ .+....|..++. ..|..+++++.
T Consensus 411 ~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg-------~~Lk~~L~~~~-------------- 469 (677)
T PF05664_consen 411 EPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYG-------NELKQFLSGVT-------------- 469 (677)
T ss_pred cchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHH-------HHHHHHHcccc--------------
Confidence 455667778888888888888776677754221 111223333333 45554443220
Q ss_pred cCCCCccchhhhhhHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH-----HHhcccHHHHHHHHHHHHHHHHHHHh
Q 003266 348 SGDMPKGIKLQTKHLEALIDLHNMTGTFARNIQHLFSESDLQVLLDTLK-----AVYFPYDTFKQRYGQMERAILSSEIA 422 (835)
Q Consensus 348 ~~~~~~~~~~~~~~l~~Ll~~~~~t~~F~~~l~~~~~~~~~~~~~~l~~-----~i~~PF~~~~~~Y~~~E~~~L~~~l~ 422 (835)
.+ -...++...++..|.+.+-.............+++ .+-+.+.++.-++.+-..+.+.+-+.
T Consensus 470 --------~L----T~d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ 537 (677)
T PF05664_consen 470 --------HL----TPDVVEVLQAADKLEKALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVD 537 (677)
T ss_pred --------cC----CHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 11233445556666666553321000000000100 11222334445566655555555444
Q ss_pred cccccccccccCCCCCcchhHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHHHHHHHH
Q 003266 423 GVDLRGAVTRGIGAQGIELSETVRRMEESIPQVIVLLEAAVERCISFTGGSE---ADELILALDDIMLQYISTLQ 494 (835)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~d~~~~l~~s~~~lf~~~~~Av~RC~~lT~g~~---~~~l~~al~~~l~~y~~~~~ 494 (835)
...-.+. ++....-.+-..|+.++|.+++++|+-.+.+--+.. +++|+..|+++|.+|+....
T Consensus 538 ra~~qE~---------W~P~S~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~ 603 (677)
T PF05664_consen 538 RAIKQEK---------WNPRSKEERHSPSVVEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKVE 603 (677)
T ss_pred HHHhhcc---------CCcCCCCCCCcchHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221 222222234477999999999999999999865443 67888888888888888774
No 183
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.17 E-value=2.1e+02 Score=26.36 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=15.7
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 60 SALLRVPRATRDVVRLRDDAISLRGSVSGILQKLK 94 (835)
Q Consensus 60 ~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~ 94 (835)
+-+..+|.- .|+..++.++..+++.+..+...++
T Consensus 56 ~~l~~LPt~-~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 56 TKLEHLPTR-DDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHhCCCH-HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444442 2355555555555555544444443
No 184
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=26.08 E-value=7.5e+02 Score=25.60 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=66.7
Q ss_pred cchhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 30 DSLDNHLVDLEMKLQMV-----------SEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 30 ~~ld~~i~~l~~kLq~~-----------~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
+++|..+..+..+|+.+ .+++...++.. ...+..+|.++. ....+.....+...+..|.+++.....
T Consensus 25 ~t~e~~~d~~~~~l~~~~~qa~~y~~~~~~elR~qv~~l-~~~l~~v~~lv~-~~~~~~~~~~~~~~~~~i~~~f~~~~~ 102 (208)
T PF14644_consen 25 ETFEQCADNLVQKLQSYQEQADEYHNSCLQELRNQVERL-EELLPKVPELVF-ESLLKRHWQKLCEAMKAIQEEFEQQQK 102 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777665 34455555555 556677777776 444666677777777777776655443
Q ss_pred C-----------------hHHHHHHHHhH-HHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 003266 99 S-----------------SAESIAALSKV-DTVKQRMEAAYETLQDAAGLTQLSLTVEDV 140 (835)
Q Consensus 99 ~-----------------~~~~~~~L~~L-D~vK~rle~a~~~L~eA~~w~~l~~~ve~l 140 (835)
. -+.....|.+| +.-+.|......+|.. .|..+...+++.
T Consensus 103 ~~~~~k~~h~~~LrP~LghP~~~~eL~~L~~~E~~R~~~~~~~I~~--~~~~l~~~~~~~ 160 (208)
T PF14644_consen 103 QWEQQKDQHEQQLRPNLGHPDNRQELESLCEREEKRQKEHQEAIQN--FWEKLLEEVRKE 160 (208)
T ss_pred HHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 2 12233345555 3456788888888886 676666655544
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.98 E-value=8.5e+02 Score=26.21 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQ 91 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~ 91 (835)
-.||.++|+.+..+..+|..+++
T Consensus 67 q~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 67 QSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 186
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=25.95 E-value=1.1e+03 Score=27.67 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDV-------------VRLRDDAISLRGSVSGILQKLKKAEGS 99 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dv-------------e~~~~ea~~L~~~l~~i~~~~~~~e~~ 99 (835)
.++.++...|+.+..+++..-+..+..+.+..-++-+|+ ..+++.+......+..+..++.+++.+
T Consensus 122 SRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~V~~~ 200 (478)
T PF11855_consen 122 SRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFRRVEDN 200 (478)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655554444444333333322222222 233344444444445555555555543
No 187
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.74 E-value=3e+02 Score=24.19 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQD 126 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~e 126 (835)
..+...+-.++..|+.++...+.-+..+.......=.+..+|...+.+++.=...|+.
T Consensus 20 ~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 20 PLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556677888888888888888777764433334677777777777777777764
No 188
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.65 E-value=1.1e+03 Score=27.36 Aligned_cols=82 Identities=10% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhH
Q 003266 55 EEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLS 134 (835)
Q Consensus 55 e~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~ 134 (835)
+..+.++.++.-.+.+.++.+.+++....++++.-..+ -.. .-++.-|+....+-+++++..-.+. +..++.
T Consensus 232 D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~---g~K--~iA~~ylr~rk~~eK~~er~~~~l~---~l~~vl 303 (439)
T KOG2911|consen 232 DGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKE---GKK--QIAITYLRARKLLEKDLERKVSSLN---NLETVL 303 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cch--HHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHH
Confidence 33444455555556666777777777666666522111 111 1223445555555566666655555 344445
Q ss_pred HHHHHHhhcC
Q 003266 135 LTVEDVFASG 144 (835)
Q Consensus 135 ~~ve~l~~~~ 144 (835)
.+|+.--..+
T Consensus 304 ~~Id~s~~nk 313 (439)
T KOG2911|consen 304 SQIDNSQTNK 313 (439)
T ss_pred HHHHhhcccH
Confidence 5555443333
No 189
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=25.54 E-value=6.9e+02 Score=25.02 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQ 57 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~ 57 (835)
..|..+..+.+++. +|++||..
T Consensus 47 ~~i~~ia~qt~lLa--lNAsIEAa 68 (213)
T PF00015_consen 47 SLINEIAEQTNLLA--LNASIEAA 68 (213)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHhhhHhh--hhhccccc
Confidence 35555555555554 77777766
No 190
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.28 E-value=1.2e+03 Score=27.65 Aligned_cols=15 Identities=7% Similarity=0.315 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 003266 146 LPRAAETLANMRHCL 160 (835)
Q Consensus 146 ~~~ia~~L~~~~~sl 160 (835)
+..+..++.++++.+
T Consensus 332 ~~~~~~~i~el~~~i 346 (562)
T PHA02562 332 FNEQSKKLLELKNKI 346 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 191
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.17 E-value=5.2e+02 Score=23.45 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=5.3
Q ss_pred HHHHHHhhcCC
Q 003266 135 LTVEDVFASGD 145 (835)
Q Consensus 135 ~~ve~l~~~~~ 145 (835)
..++.++..|+
T Consensus 96 ~~~e~~l~~~~ 106 (127)
T smart00502 96 NFTEEALNSGD 106 (127)
T ss_pred HHHHHHHHcCC
Confidence 34455555544
No 192
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=24.92 E-value=8.5e+02 Score=25.84 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003266 145 DLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGR 215 (835)
Q Consensus 145 ~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R 215 (835)
+++++-+++.....-+..-++ +|.-........++..=....|.+.+.++.-+.+......++|..+-+
T Consensus 162 ~~eKak~k~~~~~~k~~~akN--eY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 162 KLDKARDKYQKACRKLHLCHN--DYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665555444433222 677777777888888888888888888888777776666666655433
No 193
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=24.85 E-value=6.1e+02 Score=24.17 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETL 124 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L 124 (835)
-..++.++..+..|+..+.+++.++.+--.........|++|+..-.=+..+...|
T Consensus 71 ~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 71 ESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFL 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666654444444444445555554444444443333
No 194
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.76 E-value=5.5e+02 Score=25.49 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLRVP---RATRDVVRLRDDAISLRGSVSGILQ 91 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~P---r~~~dve~~~~ea~~L~~~l~~i~~ 91 (835)
++..+..|..++..+..+++.--.+. . .+.+.| .+...+..++.++..|..++..+++
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL-~-~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAEL-A-SLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666654444333332 2 234444 3344444455555555555555544
No 195
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=24.73 E-value=6.7e+02 Score=24.56 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 003266 36 LVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRD 77 (835)
Q Consensus 36 i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ 77 (835)
++..+..++.+.-.+.++|+.....+...+..+.-|++.+..
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~ 59 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLA 59 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777766666666666666666443
No 196
>smart00319 TarH Homologues of the ligand binding domain of Tar. Homologues of the ligand binding domain of the wild-type bacterial aspartate receptor, Tar.
Probab=24.59 E-value=5.5e+02 Score=23.56 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=58.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHH
Q 003266 103 SIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFAN-IRKQLEVLED 181 (835)
Q Consensus 103 ~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~~~~-r~~~le~l~n 181 (835)
+..+...|+.....|-.++.+|.+|..-... ..... -...-++.+...|....+....|..+|...+ -.+....+++
T Consensus 3 ~~~~~~~l~~s~~~ll~aR~~l~ra~~~~~~-~~~~~-~~~~~~~~a~~~l~~a~~~~~~f~~~p~~~~~~~~l~~~l~~ 80 (135)
T smart00319 3 SSYQQAALSLSRVLLLQARNNLNRAGIRMMQ-NNIGS-KAKKLMTAASESLKQAEKNYKSYENMTALPRADRALDAELKE 80 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCC-cHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcccHHHHHHHHH
Confidence 3456777888888888888888876544210 00000 0012256777778888888888888774332 2244555565
Q ss_pred HHHHHh--HHHHHHHHhcCCHHH
Q 003266 182 RLDAMV--QPRLTDALSNRKIDI 202 (835)
Q Consensus 182 rLEa~v--~p~l~~a~~~~~~~~ 202 (835)
++...+ .+.++.++..++.+.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~ 103 (135)
T smart00319 81 KFQQYITALQELIQILGNGNLGA 103 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCcch
Confidence 555543 455666776666543
No 197
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=24.26 E-value=49 Score=27.99 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=19.0
Q ss_pred HHHHHHHHhccccCCCHhHHhhhHhhHHHH
Q 003266 748 ASALYMEQLRGIQYITDHGAQQLSVDIEYL 777 (835)
Q Consensus 748 ~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL 777 (835)
++..+.|. .+|..|++..|+.|+.|++|-
T Consensus 8 svk~iAes-~Gi~~l~de~a~~La~dveyr 36 (66)
T PF02969_consen 8 SVKDIAES-LGISNLSDEAAKALAEDVEYR 36 (66)
T ss_dssp HHHHHHHH-TT---B-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHHHHH
Confidence 34444444 579999999999999999994
No 198
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=24.19 E-value=9.2e+02 Score=26.00 Aligned_cols=29 Identities=31% Similarity=0.302 Sum_probs=15.0
Q ss_pred hhHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Q 003266 132 QLSLTVEDVFASG--DLPRAAETLANMRHCL 160 (835)
Q Consensus 132 ~l~~~ve~l~~~~--~~~~ia~~L~~~~~sl 160 (835)
.+...+.+++..+ ++..+.+.|..+-+.|
T Consensus 105 ~~a~~~~~~l~~n~~~L~~~~~~L~p~~~lL 135 (267)
T PF11887_consen 105 GLADTGTDFLADNRDNLIRALDDLRPTTDLL 135 (267)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455566666553 3555555555554443
No 199
>PRK10807 paraquat-inducible protein B; Provisional
Probab=23.64 E-value=5.6e+02 Score=30.85 Aligned_cols=26 Identities=4% Similarity=-0.091 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHH
Q 003266 115 QRMEAAYETLQDAAGLTQLSLTVEDV 140 (835)
Q Consensus 115 ~rle~a~~~L~eA~~w~~l~~~ve~l 140 (835)
+-|.....+|+.+..=+.+..++.+.
T Consensus 480 ~TL~~l~~~l~~~~~~s~~~~~l~~t 505 (547)
T PRK10807 480 KTLRELNRSMQGFQPGSPAYNKMVAD 505 (547)
T ss_pred HHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 33333344444332233333444433
No 200
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.61 E-value=5.6e+02 Score=23.26 Aligned_cols=57 Identities=14% Similarity=0.294 Sum_probs=44.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC-CHHHHHHHHHHHHHH
Q 003266 101 AESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASG-DLPRAAETLANMRHC 159 (835)
Q Consensus 101 ~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~-~~~~ia~~L~~~~~s 159 (835)
...+..|..||.-++.+....+.|+. .-..++++|-...+.| +....-.....+++-
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~--~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~ 82 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRA--ERNELSKEIGKLKKAGEDAEELKAEVKELKEE 82 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHhhCcccHHHHHHHHHHHHHH
Confidence 46788999999999999999999996 5667788998888887 555555555555544
No 201
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.51 E-value=1e+03 Score=26.15 Aligned_cols=16 Identities=50% Similarity=0.746 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 003266 171 NIRKQLEVLEDRLDAM 186 (835)
Q Consensus 171 ~r~~~le~l~nrLEa~ 186 (835)
..+..++.+.++|+..
T Consensus 258 ~~~~~l~~~~~~L~~l 273 (319)
T PF02601_consen 258 QKRQRLERLEARLEAL 273 (319)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4555666666666643
No 202
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=23.49 E-value=1.7e+03 Score=28.88 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 003266 172 IRKQLEVLEDRLD 184 (835)
Q Consensus 172 r~~~le~l~nrLE 184 (835)
....++.++.+++
T Consensus 956 l~~~l~~l~~~i~ 968 (1164)
T TIGR02169 956 VQAELQRVEEEIR 968 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 203
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=23.49 E-value=1.2e+03 Score=27.08 Aligned_cols=90 Identities=23% Similarity=0.358 Sum_probs=46.8
Q ss_pred HHHHHhhhhhhhHHHHHHHhhcCC---------HHHHHHHHHHHHHHH-hhcccchhHHHHH-----HHHHHHHHHHHHH
Q 003266 122 ETLQDAAGLTQLSLTVEDVFASGD---------LPRAAETLANMRHCL-SAVGEVAEFANIR-----KQLEVLEDRLDAM 186 (835)
Q Consensus 122 ~~L~eA~~w~~l~~~ve~l~~~~~---------~~~ia~~L~~~~~sl-~~l~~~p~~~~r~-----~~le~l~nrLEa~ 186 (835)
..|. .++.|..+|+.+...-. ++-+-+||.+++..= .-+..+.+|=+|| +..++..+|++.+
T Consensus 241 ~LL~---~Lt~LAa~vE~~~a~t~~RF~As~AY~~iV~~RL~eLrE~~i~g~~tl~eF~~RRl~PAmrTC~a~~~R~~~L 317 (420)
T PF11902_consen 241 ELLD---ELTRLAAEVEALAARTSYRFSASRAYYEIVEQRLAELREERIPGYQTLSEFLERRLTPAMRTCEAVERRQEDL 317 (420)
T ss_pred HHHH---HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhcccccCCCCcHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555 47778888888865533 445566777776641 2222333444432 3445555555543
Q ss_pred hHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 003266 187 VQPRLTDALS----NRKIDIARDLRGILIRIGR 215 (835)
Q Consensus 187 v~p~l~~a~~----~~~~~~~~~~~~il~~i~R 215 (835)
+.++..+.. .=|++.-++-.++|.+++|
T Consensus 318 -s~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~r 349 (420)
T PF11902_consen 318 -SRRVARATDLLRTRVDVELEQQNQDLLASMDR 349 (420)
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 222222221 1233444445677888877
No 204
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=23.33 E-value=5.9e+02 Score=23.47 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003266 70 RDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLT 131 (835)
Q Consensus 70 ~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~ 131 (835)
||+..+...+..+...+..+...+..+..+....+.-+...+.+..-+..+....+-...++
T Consensus 1 rd~~~v~~~i~~I~~~v~~l~~~i~~~~gg~~~~~~i~~~~~~l~~~i~~~~~~~~~~~~lt 62 (124)
T PF12296_consen 1 RDAATVISDINNISTAVTKLDTAIKAYNGGDLGALPILSASDALVSAIKQATTDVQASPPLT 62 (124)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHH--SS----HHHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 45555666666666666666666666665554555556666666666666666665444443
No 205
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.25 E-value=8.5e+02 Score=25.27 Aligned_cols=122 Identities=15% Similarity=0.270 Sum_probs=59.6
Q ss_pred HhHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHH--hhcCC----HHHHHHHHHHHHHHHhhccc-chhHHHHHH-HHHH
Q 003266 108 SKVDTVKQRMEAAYETLQDA-AGLTQLSLTVEDV--FASGD----LPRAAETLANMRHCLSAVGE-VAEFANIRK-QLEV 178 (835)
Q Consensus 108 ~~LD~vK~rle~a~~~L~eA-~~w~~l~~~ve~l--~~~~~----~~~ia~~L~~~~~sl~~l~~-~p~~~~r~~-~le~ 178 (835)
.+=|..-.|.+.|++++++| +.+.....++..+ +..|+ |..+-...+........+.+ +...++.-. .+..
T Consensus 21 hKRdilvdrVe~Ardsq~eaqeQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~E 100 (201)
T PF11172_consen 21 HKRDILVDRVEDARDSQQEAQEQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDE 100 (201)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677889999999998 5566655666666 44455 44444444444444332222 222222221 3334
Q ss_pred HHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Q 003266 179 LEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEE 237 (835)
Q Consensus 179 l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~ 237 (835)
-+..|+.--.|.|...-..+=...-.+|-+++..+.| ......|+...+++
T Consensus 101 We~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~--------Ae~km~PVL~~~~D 151 (201)
T PF11172_consen 101 WEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRR--------AESKMQPVLAAFRD 151 (201)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhcChHHHHHHH
Confidence 4444444444444443322222222334444444444 23344566655544
No 206
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=22.91 E-value=1.5e+03 Score=28.06 Aligned_cols=130 Identities=19% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHH
Q 003266 40 EMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEA 119 (835)
Q Consensus 40 ~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~ 119 (835)
+.+|.-...+....|.+. +|.+...+..+-+.+...+.=+..-++.+..+ .+.|.++|.+=.|++.
T Consensus 6 l~qlt~i~~~~~~~L~~~-------i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L-------~~~l~~ID~ai~~~l~ 71 (683)
T PF08580_consen 6 LSQLTSILLPIALYLSES-------IPTAFNAVKALSGAAEQILDWIQKAKDVLYGL-------REGLEEIDSAISRFLD 71 (683)
T ss_pred HHHHHhcccchHHHHHHH-------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHH
Q ss_pred HHHH----HHHhh-------hhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccch-hHHHHHH-HHHHHHHHHHHH
Q 003266 120 AYET----LQDAA-------GLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVA-EFANIRK-QLEVLEDRLDAM 186 (835)
Q Consensus 120 a~~~----L~eA~-------~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p-~~~~r~~-~le~l~nrLEa~ 186 (835)
-++. +.+-+ ....+...+.++.. .|-..|..+++. .++. +|+|.+. .|..+.+.+|..
T Consensus 72 lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~-----~vK~~L~~vK~q----veiAmE~~EL~~~vlg~l~~EIe~~ 142 (683)
T PF08580_consen 72 LIEVYVSAIEDLQLREDIANSLFDLIEEVSQMEL-----DVKKTLISVKKQ----VEIAMEWEELWNDVLGDLDNEIEEC 142 (683)
T ss_pred HHHhhccccccccccccccccHHHHHHHHHHHHH-----HHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHH
Q 003266 187 VQPRLT 192 (835)
Q Consensus 187 v~p~l~ 192 (835)
+.--|.
T Consensus 143 ~~~vfe 148 (683)
T PF08580_consen 143 IRLVFE 148 (683)
T ss_pred HHHHHH
No 207
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=22.90 E-value=2.5e+02 Score=29.74 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChH-HHHHHHHhHHHHHHHHHHHHHHHHHhhh
Q 003266 72 VVRLRDDAISLRGSVSGILQKLKKAEGSSA-ESIAALSKVDTVKQRMEAAYETLQDAAG 129 (835)
Q Consensus 72 ve~~~~ea~~L~~~l~~i~~~~~~~e~~~~-~~~~~L~~LD~vK~rle~a~~~L~eA~~ 129 (835)
++.+..++..+.-++..|..-++.--.... ..+....-....++|.+.+...++.++.
T Consensus 95 l~~l~d~aqg~afdvg~iD~~lsr~y~~sy~at~~~~~~~~~a~srwQ~~~~~~~~~m~ 153 (252)
T COG5314 95 LQNLQDQAQGYAFDVGSIDDYLSRYYDSSYDATSPCFQDAQSASSRWQNTRNGIAGTMR 153 (252)
T ss_pred HHHHHHHHhHHHhhhhhHHHHHHHhcchHHHhcCCcccchhhHHHHHHHHHhHHHHHHH
Confidence 445555566665555555554443333321 1111234445566777777766665444
No 208
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=22.84 E-value=3.9e+02 Score=26.83 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh-hhhhhhHHHHHHHhhc-CCHHHHHHHHHHHHHHHhhcccchhHHH--HHHHHHHHHHHHHHHhHHH
Q 003266 115 QRMEAAYETLQDA-AGLTQLSLTVEDVFAS-GDLPRAAETLANMRHCLSAVGEVAEFAN--IRKQLEVLEDRLDAMVQPR 190 (835)
Q Consensus 115 ~rle~a~~~L~eA-~~w~~l~~~ve~l~~~-~~~~~ia~~L~~~~~sl~~l~~~p~~~~--r~~~le~l~nrLEa~v~p~ 190 (835)
+.+..+...+++- ..|..+.++...++.+ +++.+--+.+..++..=..+...|+..+ +.+++++++.-|..+
T Consensus 1 ~~lr~~f~~~~~~~~~W~~~~~~~~~~l~sl~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L---- 76 (168)
T PF15011_consen 1 QALRKCFRKVEEQMEKWDSALSRCLPLLSSLANLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKL---- 76 (168)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHH----
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccchHHHHHH
Q 003266 191 LTDALSNRKIDIARDLRGILIRIGRFKSLELH 222 (835)
Q Consensus 191 l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~ 222 (835)
....+....+++.|..+-+ +.+.-|
T Consensus 77 ------~e~l~~l~~v~~~l~~~~~-~~~~l~ 101 (168)
T PF15011_consen 77 ------RETLEELQKVRDSLSRQVR-DVFQLY 101 (168)
T ss_pred ------HHHHHHHHHHHHHHHHHHH-HHHHHH
No 209
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=22.69 E-value=6.3e+02 Score=29.47 Aligned_cols=29 Identities=0% Similarity=0.031 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003266 67 RATRDVVRLRDDAISLRGSVSGILQKLKK 95 (835)
Q Consensus 67 r~~~dve~~~~ea~~L~~~l~~i~~~~~~ 95 (835)
.+..+.+...+-+..|+.++...+-+...
T Consensus 276 DP~~~a~~~~~lI~~Le~qLa~~~aeL~~ 304 (434)
T PRK15178 276 DPKETITAIYQLIAGFETQLAEAKAEYAQ 304 (434)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555444444443
No 210
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.59 E-value=8.1e+02 Score=24.77 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSS 100 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~ 100 (835)
||.-|..|..|+|.+.+..+ .+|..+..+.+. . -++.|+.++..|+..+...++++..+.+.+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s-~veaEik~L~s~----L-t~eemQe~i~~L~kev~~~~erl~~~k~g~ 146 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCS-YVEAEIKELSSA----L-TTEEMQEEIQELKKEVAGYRERLKNIKAGT 146 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh----c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67778888888888875544 334433332222 2 256677777777777766666666666554
No 211
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=22.52 E-value=4.4e+02 Score=24.29 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=20.2
Q ss_pred HhhhchhHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc
Q 003266 62 LLRVPRATRDVVRL--RDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 62 l~~~Pr~~~dve~~--~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
-+++..+-.+++.+ ++++..|+-.|..++.+++.+++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~ 86 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSA 86 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34544445555555 55566666666555555555544
No 212
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.46 E-value=1e+03 Score=25.87 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAE 97 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e 97 (835)
-.|+..++..+..|+..+..++.....++
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 33333344444444444444444333333
No 213
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.46 E-value=1.1e+03 Score=26.41 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003266 70 RDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQD 126 (835)
Q Consensus 70 ~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~e 126 (835)
.++++.+.+..+|+..=..++...+ +....+++|++....|+..++.|+.
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~-------kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQ-------KLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHH-------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444443333333333 3344577777777888888888873
No 214
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=22.39 E-value=1.8e+03 Score=28.75 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=21.6
Q ss_pred HHHHHHHHHH-HHHHHH----HHhccccCCCHhHHhhhHhh
Q 003266 738 TEWMFKVAEG-ASALYM----EQLRGIQYITDHGAQQLSVD 773 (835)
Q Consensus 738 ~~WL~~va~~-~~~~y~----e~i~~I~~Lt~~ga~QLa~D 773 (835)
+.|||-|-|- .+.+.+ +.-.+-.-+|++|-.+|..|
T Consensus 1021 DVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~~ 1061 (1074)
T KOG0250|consen 1021 DVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNSD 1061 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhccc
Confidence 5677776665 233333 34455556788888777655
No 215
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=22.17 E-value=1.4e+03 Score=27.34 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh--------hhH
Q 003266 67 RATRDVVRLRDDAISLRGSVSGILQKLKKAE----GSSAESIAALSKVDTVKQRMEAAYETLQDAAGLT--------QLS 134 (835)
Q Consensus 67 r~~~dve~~~~ea~~L~~~l~~i~~~~~~~e----~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~--------~l~ 134 (835)
++...+..+.+.+....++|..|++++..+. .+...+-..+..-+..|++.-+=.+.+.++...- ...
T Consensus 101 kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l 180 (570)
T COG4477 101 KAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEEL 180 (570)
T ss_pred HhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhc----ccchhH-----HHHHHHHHHHHHHHHHHh
Q 003266 135 LTVEDVFASGDLPRAAETLANMRHCLSAV----GEVAEF-----ANIRKQLEVLEDRLDAMV 187 (835)
Q Consensus 135 ~~ve~l~~~~~~~~ia~~L~~~~~sl~~l----~~~p~~-----~~r~~~le~l~nrLEa~v 187 (835)
++-+.+-.+|||-+++.-|.+..+-|..+ ..+|.. .+.-.+++.|++=.+.++
T Consensus 181 ~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~ 242 (570)
T COG4477 181 SQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMK 242 (570)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
No 216
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.81 E-value=6.1e+02 Score=23.01 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLT 131 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~ 131 (835)
......|.+.+.+|...+..+.++..++. .++++|..+|.-=..|+.+...|. .|+
T Consensus 34 ~~kY~~~~~~~~~l~~~~~~l~~k~~~l~----~~l~~Id~Ie~~V~~LE~~v~~LD---~ys 89 (99)
T PF10046_consen 34 SLKYKKMKDIAAGLEKNLEDLNQKYEELQ----PYLQQIDQIEEQVTELEQTVYELD---EYS 89 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34466688888888888888887776665 577788888888888888887777 474
No 217
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.72 E-value=2e+03 Score=28.90 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=9.4
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 003266 165 EVAEFANIRKQLEVLEDRL 183 (835)
Q Consensus 165 ~~p~~~~r~~~le~l~nrL 183 (835)
.+++++++...++..+.+|
T Consensus 582 ~~~~~~d~l~~le~~k~~l 600 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKL 600 (1317)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 4445555555555544443
No 218
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.22 E-value=8.7e+02 Score=24.58 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh---------HHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 003266 70 RDVVRLRDDAISLRGSVSGILQKLKKAEGSS---------AESIAALSKVDTVKQRMEAAYETLQDA 127 (835)
Q Consensus 70 ~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~---------~~~~~~L~~LD~vK~rle~a~~~L~eA 127 (835)
.|+..|.+++..|.++++..++.+..+++.+ .+.-..|.+|+.+=..+..-...|+.+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777778777777777776666542 333345666666665555555555543
No 219
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.12 E-value=7.8e+02 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003266 77 DDAISLRGSVSGILQKLKK 95 (835)
Q Consensus 77 ~ea~~L~~~l~~i~~~~~~ 95 (835)
.++.+|+.++..+..++.+
T Consensus 35 ~EI~sL~~K~~~lE~eld~ 53 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDK 53 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333
No 220
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=20.87 E-value=6.4e+02 Score=25.65 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSA---SALLRVPRATRDVVRLRDDAISLRGSVSGILQKLK 94 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~---~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~ 94 (835)
.++.++..|..-+.++...+++..+ .....-|...+||..+.+++..|..++..|.+-+.
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555432 22235677777887788888777777777665443
No 221
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.79 E-value=1.1e+03 Score=29.30 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 003266 71 DVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLT 131 (835)
Q Consensus 71 dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~ 131 (835)
.++....++..|+.++..-++.+.--....-.|-..|..|+++|.=...+--+-+-|+.|.
T Consensus 384 r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~l~dLt~~~~e~~~ 444 (1480)
T COG3096 384 RAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWL 444 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 3555677888888888877776544333333555667777777765544444444455554
No 222
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.78 E-value=2.1e+03 Score=28.82 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCH---HHHHHHHHH
Q 003266 134 SLTVEDVFASGDLPRAAETLANMRHCLSAVGEVA-EFANIRKQLEVLEDRLDAMVQPRLTDALSNRKI---DIARDLRGI 209 (835)
Q Consensus 134 ~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p-~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~---~~~~~~~~i 209 (835)
....+.++....-...++.....+.....+.+.+ .+.+-+..+..|++-+.-. -|...+.+..+-. ..-.+|+++
T Consensus 922 ~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~e~~~~~~~~i~~f~~~ 1000 (1201)
T PF12128_consen 922 VERFKGVLTKHSGSELAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELLDVL-IPQQQQALIEQGRNIGNDISNFYGV 1000 (1201)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555533322334444444544444444432 1223334466666666655 5555555543332 233568888
Q ss_pred HHhccc
Q 003266 210 LIRIGR 215 (835)
Q Consensus 210 l~~i~R 215 (835)
|.+|+|
T Consensus 1001 l~~~~r 1006 (1201)
T PF12128_consen 1001 LEDFDR 1006 (1201)
T ss_pred HHHHhh
Confidence 888887
No 223
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.68 E-value=8.6e+02 Score=24.36 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSS 100 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~ 100 (835)
..++..++.+-..+++.+....+++..++...
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 139 (191)
T PF04156_consen 108 ESELEKLKEDLQELRELLKSVEERLDSLDESI 139 (191)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555444443
No 224
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=20.66 E-value=1.6e+03 Score=27.62 Aligned_cols=178 Identities=13% Similarity=0.139 Sum_probs=95.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 003266 56 EQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSL 135 (835)
Q Consensus 56 ~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~ 135 (835)
....++...+-.+..|++.|......-...|..+++++...|..-.. |+.-..=|+.|....+.|- ..-.+..
T Consensus 30 ~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~----Lqvq~~N~k~L~~eL~~Ll---~~l~i~~ 102 (701)
T PF09763_consen 30 KQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNG----LQVQSANQKLLLNELENLL---DTLSIPE 102 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHHHHHH---HhcCCCH
Confidence 33455556666667777777777777777777777777777753221 1111111222222211111 1112222
Q ss_pred -HHHHH----hhc-CCHHHHHHHHHHHHHHHhhccc-----chhH------HHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 003266 136 -TVEDV----FAS-GDLPRAAETLANMRHCLSAVGE-----VAEF------ANIRKQLEVLEDRLDAMVQPRLTDALSNR 198 (835)
Q Consensus 136 -~ve~l----~~~-~~~~~ia~~L~~~~~sl~~l~~-----~p~~------~~r~~~le~l~nrLEa~v~p~l~~a~~~~ 198 (835)
.++.| |.+ .++..+-..+..+.+.|..+.. -|++ .+|++.++.++..+-..+..-+...|...
T Consensus 103 ~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~~~F~~r~~~~l~~~F~~~ 182 (701)
T PF09763_consen 103 EHLEALRNASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVSDKFCKRLSRFLNNMFKNL 182 (701)
T ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 222 2377887888888888776432 1333 46777777776666666666666666211
Q ss_pred ---------------CH-----HHHHHHHHHHH-------hc--cchHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 199 ---------------KI-----DIARDLRGILI-------RI--GRFKSLELHYTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 199 ---------------~~-----~~~~~~~~il~-------~i--~R~~~l~~~Y~~~~~~~l~~~W~~~~~ 240 (835)
+. .....-.-.|. .+ .....+...|+.+-..-|.+.|..+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~h~~~~~~L~~ys~Li~~lK~~d~~~y~~L~~~Y~~~~~~ly~~e~~~~~~ 253 (701)
T PF09763_consen 183 VDELLSDKDSFSQSGKLSLPKHSSLHNELLPYSGLILWLKEVDPESYQALIKAYNSSMSKLYEREIRDFFE 253 (701)
T ss_pred HHHHHhhhccccccccCChHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111112222 22 567788899998888888777766433
No 225
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=20.43 E-value=5.9e+02 Score=22.36 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=12.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHh
Q 003266 106 ALSKVDTVKQRMEAAYETLQDA 127 (835)
Q Consensus 106 ~L~~LD~vK~rle~a~~~L~eA 127 (835)
-..+|..+|+||......++..
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~l 83 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKL 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555543
No 226
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=20.37 E-value=2.2e+03 Score=29.01 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.6
Q ss_pred CCCccccc
Q 003266 676 SRLPIWSS 683 (835)
Q Consensus 676 ~~~~~W~~ 683 (835)
.+...|..
T Consensus 1312 ~s~~~Wg~ 1319 (1353)
T TIGR02680 1312 TSEREWGC 1319 (1353)
T ss_pred Eccchhcc
Confidence 33445543
No 227
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=20.30 E-value=1.6e+03 Score=28.50 Aligned_cols=38 Identities=16% Similarity=0.331 Sum_probs=32.4
Q ss_pred hhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhccc
Q 003266 128 AGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGE 165 (835)
Q Consensus 128 ~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~ 165 (835)
+.+..++.+|+++.++|+-+++-+.|..|++-|..+..
T Consensus 538 ~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~ 575 (820)
T PF13779_consen 538 QDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQN 575 (820)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 34667788999999999999999999999999977754
No 228
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=20.29 E-value=5.3e+02 Score=23.11 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=42.9
Q ss_pred hhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccch-----hHHHHHHHHHHHHHHHHHHhHH
Q 003266 129 GLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVA-----EFANIRKQLEVLEDRLDAMVQP 189 (835)
Q Consensus 129 ~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p-----~~~~r~~~le~l~nrLEa~v~p 189 (835)
.|.. ..+|+.+...-....+..++.=++....+++.+| +-+.|.+.+...++.|...+..
T Consensus 19 ~Wi~-~~~i~~l~~~~~~~d~e~qI~Flrel~~l~r~~Pv~vF~D~EqR~~vL~a~Q~alD~aI~~ 83 (87)
T PF09059_consen 19 RWIG-PSQIERLAEALGLPDIEQQILFLRELKELFRLMPVDVFNDEEQRQNVLDAVQEALDQAIER 83 (87)
T ss_dssp TT---HHHHHHHHHCT--SSHHHHHHHHHHHHHHHHTS-GGGSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcC-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHCcHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5633 3577788777777778888888888888888888 5678999999999988877654
No 229
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.17 E-value=1.8e+03 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=16.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 003266 106 ALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVE 138 (835)
Q Consensus 106 ~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve 138 (835)
+..+|..++.+-+..++.|++ ....++++.+
T Consensus 529 ~~s~L~aa~~~ke~irq~ikd--qldelskE~e 559 (1118)
T KOG1029|consen 529 RKSELEAARRKKELIRQAIKD--QLDELSKETE 559 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 455566666666666666654 3444444433
No 230
>PRK08913 flgL flagellar hook-associated protein FlgL; Validated
Probab=20.14 E-value=1.1e+03 Score=25.47 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHhhcCCHHHH
Q 003266 71 DVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSL-TVEDVFASGDLPRA 149 (835)
Q Consensus 71 dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~-~ve~l~~~~~~~~i 149 (835)
.+...+.+...++++|..=+. +.. ..+.+.....+..|..-..+++.....+..|..|-.... .+ ..+
T Consensus 17 ~i~~~~~~l~~~~~qlsTGkr-~~~-~s~~~~~~~~~~~l~~~~~~~~q~~~ni~~a~~~l~~~e~aL---------~~i 85 (301)
T PRK08913 17 AALRTQQTMASLQIQESSGLK-SES-FAGLGADAQQAVNLQVSVTRAQSYIDAATLAQSKVQVMYSAV---------GQI 85 (301)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-cCC-ccccchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 344555555555555553332 111 112233455777888888888888888888888855442 33 377
Q ss_pred HHHHHHHHHHHh
Q 003266 150 AETLANMRHCLS 161 (835)
Q Consensus 150 a~~L~~~~~sl~ 161 (835)
...|..+++.+.
T Consensus 86 ~~~l~~~r~l~v 97 (301)
T PRK08913 86 ADLAQQLRSSLS 97 (301)
T ss_pred HHHHHHHHHHHH
Confidence 777888887654
No 231
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.04 E-value=4.3e+02 Score=22.32 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 003266 33 DNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGIL 90 (835)
Q Consensus 33 d~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~ 90 (835)
+.+|..|++||--+ ...|+++.+.+.+- -+++++++..+..|.+++..+.
T Consensus 3 e~Ri~~LE~~la~q----e~~ie~Ln~~v~~Q----q~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQ----EDTIEELNDVVTEQ----QRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666665432 23333332222222 5667777777777777776665
Done!