Query 003266
Match_columns 835
No_of_seqs 161 out of 192
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 19:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fji_1 Exocyst complex compone 98.0 0.0015 5.2E-08 73.1 27.2 273 449-831 56-352 (399)
2 2a2f_X Exocyst complex compone 96.9 0.037 1.3E-06 59.9 18.4 109 656-787 185-295 (325)
3 3fhn_A Protein transport prote 96.5 2.1 7.3E-05 50.5 48.3 154 639-805 501-660 (706)
4 3ns4_A Vacuolar protein sortin 95.8 0.041 1.4E-06 56.8 10.6 100 734-833 21-162 (271)
5 2d2s_A Exocyst complex compone 94.3 3.5 0.00012 42.3 20.0 104 132-238 20-129 (235)
6 2b1e_A Exocyst complex compone 93.5 9.6 0.00033 44.1 24.2 149 136-300 24-204 (564)
7 2pft_A Exocytosis protein; hel 91.8 23 0.00078 41.0 24.9 60 440-500 296-359 (571)
8 3s84_A Apolipoprotein A-IV; fo 82.2 51 0.0017 34.3 19.7 60 34-93 22-82 (273)
9 3na7_A HP0958; flagellar bioge 79.3 29 0.001 35.7 14.4 46 49-98 15-60 (256)
10 2a01_A Apolipoprotein A-I; fou 75.7 22 0.00075 36.4 12.1 31 33-63 54-84 (243)
11 3vkg_A Dynein heavy chain, cyt 75.0 42 0.0014 46.6 17.5 67 146-222 2065-2132(3245)
12 3tul_A Cell invasion protein S 73.0 30 0.001 32.3 10.7 60 69-128 68-127 (158)
13 3hr0_A COG4; conserved oligome 71.3 99 0.0034 31.9 23.0 92 702-805 126-221 (263)
14 3n1e_A Vacuolar protein sortin 69.1 42 0.0014 31.4 11.1 81 698-789 49-131 (141)
15 3na7_A HP0958; flagellar bioge 64.2 1.3E+02 0.0045 30.7 19.2 28 71-98 40-67 (256)
16 1upt_B Golgi autoantigen, golg 62.7 8.7 0.0003 30.5 4.2 41 772-812 5-47 (60)
17 1quu_A Human skeletal muscle a 62.6 1.3E+02 0.0045 30.1 15.1 37 15-52 26-66 (250)
18 3r2p_A Apolipoprotein A-I; amp 61.3 29 0.001 33.8 9.0 25 33-57 55-79 (185)
19 3ol1_A Vimentin; structural ge 59.5 77 0.0026 28.6 10.8 80 43-126 18-97 (119)
20 3s84_A Apolipoprotein A-IV; fo 54.9 2E+02 0.0068 29.8 20.3 62 32-93 42-104 (273)
21 1sjj_A Actinin; 3-helix bundle 52.8 1.4E+02 0.0048 35.9 15.0 16 225-240 570-585 (863)
22 3u1c_A Tropomyosin alpha-1 cha 52.4 1.2E+02 0.0041 26.5 13.1 86 38-124 6-91 (101)
23 3ghg_A Fibrinogen alpha chain; 47.7 2.9E+02 0.01 31.1 14.7 29 34-63 64-92 (562)
24 2dnx_A Syntaxin-12; snare, HAB 47.3 49 0.0017 30.3 7.5 35 77-111 44-78 (130)
25 4fla_A Regulation of nuclear P 42.7 1.2E+02 0.0042 28.6 9.6 38 36-75 24-61 (152)
26 1hci_A Alpha-actinin 2; triple 42.5 3.7E+02 0.013 29.3 18.4 18 223-240 329-346 (476)
27 2v71_A Nuclear distribution pr 41.7 2.6E+02 0.0089 27.3 12.1 49 44-92 37-85 (189)
28 3tnu_B Keratin, type II cytosk 39.7 2.2E+02 0.0074 25.8 12.4 47 78-124 76-122 (129)
29 3swk_A Vimentin; cytoskeleton, 38.6 1.8E+02 0.0062 24.6 9.5 75 48-126 3-77 (86)
30 3r2p_A Apolipoprotein A-I; amp 38.0 1.7E+02 0.006 28.2 10.3 62 32-93 65-127 (185)
31 3tnu_A Keratin, type I cytoske 37.6 2.4E+02 0.0081 25.7 11.5 81 34-125 45-125 (131)
32 3ghg_A Fibrinogen alpha chain; 36.6 1.1E+02 0.0038 34.5 9.2 11 146-156 178-188 (562)
33 2a01_A Apolipoprotein A-I; fou 35.7 1.7E+02 0.0057 29.7 10.1 21 167-187 220-240 (243)
34 1i84_S Smooth muscle myosin he 33.6 55 0.0019 41.3 7.2 7 36-42 866-872 (1184)
35 1nfn_A Apolipoprotein E3; lipi 32.4 2.8E+02 0.0094 27.0 10.7 22 75-96 64-85 (191)
36 1ic2_A Tropomyosin alpha chain 31.6 2.2E+02 0.0076 23.6 9.9 18 110-127 57-74 (81)
37 1deq_A Fibrinogen (alpha chain 31.1 1.7E+02 0.0057 31.7 9.2 80 36-116 93-194 (390)
38 3l39_A Putative PHOU-like phos 30.6 4.1E+02 0.014 26.3 20.2 140 69-215 62-207 (227)
39 1deb_A APC protein, adenomatou 30.6 1.5E+02 0.0053 22.4 6.2 36 67-102 7-42 (54)
40 2l5g_B Putative uncharacterize 30.3 95 0.0032 22.8 4.9 34 60-93 6-39 (42)
41 1t72_A Phosphate transport sys 30.2 3.9E+02 0.013 25.9 20.0 182 32-215 9-196 (227)
42 3u59_A Tropomyosin beta chain; 29.4 2.8E+02 0.0095 24.0 13.1 58 40-98 8-65 (101)
43 3oja_B Anopheles plasmodium-re 28.7 3.4E+02 0.012 30.7 12.5 57 66-122 498-554 (597)
44 2xdj_A Uncharacterized protein 28.7 2E+02 0.0067 24.3 7.6 30 69-98 26-55 (83)
45 2iub_A CORA, divalent cation t 27.6 4.2E+02 0.015 28.1 12.3 64 34-97 184-248 (363)
46 3u1c_A Tropomyosin alpha-1 cha 27.2 3.1E+02 0.011 23.8 11.4 72 68-139 14-90 (101)
47 3vkg_A Dynein heavy chain, cyt 27.1 1.5E+03 0.051 31.8 20.9 59 34-93 1899-1957(3245)
48 3efg_A Protein SLYX homolog; x 26.8 1.3E+02 0.0046 25.0 6.1 54 30-91 10-63 (78)
49 1t3j_A Mitofusin 1; coiled coi 26.8 2.1E+02 0.0072 24.9 7.5 59 35-97 33-91 (96)
50 1xwm_A PHOU, phosphate uptake 26.3 4.4E+02 0.015 25.3 17.6 59 32-90 5-63 (217)
51 2zqm_A Prefoldin beta subunit 26.2 79 0.0027 27.9 5.1 86 102-187 24-111 (117)
52 3edu_A Beta-I spectrin, spectr 24.9 4.7E+02 0.016 25.2 17.5 38 14-52 12-52 (218)
53 3lss_A Seryl-tRNA synthetase; 24.4 1.2E+02 0.0042 34.1 7.3 11 1-11 6-16 (484)
54 4e61_A Protein BIM1; EB1-like 24.3 3E+02 0.01 24.4 8.1 55 63-117 4-58 (106)
55 1cii_A Colicin IA; bacteriocin 24.1 7.7E+02 0.026 27.3 17.1 102 134-240 438-547 (602)
56 3pdy_A Plectin; cytoskeleton, 24.0 3.1E+02 0.011 26.6 9.6 17 224-240 182-198 (210)
57 3nvo_A Zinc transport protein 23.8 3.7E+02 0.013 26.8 10.5 65 34-98 151-215 (264)
58 2lw1_A ABC transporter ATP-bin 22.6 3.2E+02 0.011 23.0 8.0 53 69-121 21-76 (89)
59 2l7b_A Apolipoprotein E, APO-E 22.4 4.1E+02 0.014 27.9 10.5 18 148-165 177-194 (307)
60 1fxk_A Prefoldin; archaeal pro 22.1 99 0.0034 26.8 4.8 84 102-185 19-104 (107)
61 4gkw_A Spindle assembly abnorm 21.4 4.7E+02 0.016 23.8 15.2 24 75-98 58-81 (167)
62 4dnd_A Syntaxin-10, SYN10; str 21.3 4.7E+02 0.016 23.8 10.9 61 108-186 63-124 (130)
63 4emc_A Monopolin complex subun 21.3 2.1E+02 0.0071 27.9 7.1 17 39-55 21-37 (190)
64 3g67_A Methyl-accepting chemot 21.2 6E+02 0.021 25.1 18.6 25 135-159 100-127 (213)
65 1xl3_C Protein type A, secreti 20.9 1.6E+02 0.0056 25.3 5.6 60 129-189 19-83 (92)
66 1m1j_C Fibrinogen gamma chain; 20.8 6E+02 0.02 27.8 11.7 21 69-89 47-67 (409)
67 2jqq_A Conserved oligomeric go 20.2 6.1E+02 0.021 24.7 12.4 128 69-197 46-186 (204)
68 1cun_A Protein (alpha spectrin 20.1 5.6E+02 0.019 24.2 17.9 17 224-240 183-199 (213)
No 1
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.0015 Score=73.05 Aligned_cols=273 Identities=11% Similarity=0.122 Sum_probs=177.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------CCCCCCCCcccccccc
Q 003266 449 EESIPQVIVLLEAAVERCISFTGGSEADELILALDDIMLQYISTLQELLKSLRAVCG-------VDHDGVGSKKEVGFDK 521 (835)
Q Consensus 449 ~~s~~~lf~~~~~Av~RC~~lT~g~~~~~l~~al~~~l~~y~~~~~~~l~~lr~~~~-------~~~~~~~~~~~~~s~~ 521 (835)
.+....+|.++++.++|+...+.+.-+++.+......|..|...|+..+..-...+. .++..- +.+. .
T Consensus 56 t~~~~dvfqml~eql~~a~~~~~~~l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--~- 130 (399)
T 2fji_1 56 LDGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESI--TPED--E- 130 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSC--CTTT--C-
T ss_pred CCchHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc--Cccc--c-
Confidence 556899999999999999997777677777777777888888888877655322221 110000 0000 0
Q ss_pred ccccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCchhhhccccccCCCCC
Q 003266 522 KEGVSNARKADISSEEEWSIVQGALQILTVADCLTSRSSVFEASLRATLARLSTSLSLSVFGSSLDQKQSQSANVDGHGE 601 (835)
Q Consensus 522 ~~~~~~~~~~~~~~~edW~~~q~al~lL~~~~~l~~~~~~~E~~l~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 601 (835)
..+ ......+.++|.|..+..-+..|+.++...+.
T Consensus 131 -------------~~~--~~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~------------------------------ 165 (399)
T 2fji_1 131 -------------CPG--GLVEYLIAVSNDQMKAADYAVAISSKYGKLVS------------------------------ 165 (399)
T ss_dssp -------------CCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------------------------------
T ss_pred -------------ccc--cHHHhhhhhhccHHHHHHHHHHHHHHHHHhcc------------------------------
Confidence 000 03555677777777666655555554321110
Q ss_pred cccccchhhhHHHHhhhcCHHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Q 003266 602 LSVGGRAALDVAAVRLIDVPEKARKLFNLLDQSKDPRFHALPLASQRVAAFADAVNELVYDVLISKVRQRLSDVSRLPIW 681 (835)
Q Consensus 602 ~~~~~~~~~d~~~~~l~~~~~~~~~l~~ll~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~d~i~~pi~~~L~~~~~~~~W 681 (835)
+.-...+.+-++. .......+.+.|...+.+.+|.-++.+|..+-+ ..|
T Consensus 166 -------------------~~~~~~~~~~l~~-----------~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft-~~W 214 (399)
T 2fji_1 166 -------------------KVYEKQITNHLEG-----------TLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFS-KTW 214 (399)
T ss_dssp -------------------HHHHHHHHHHHHT-----------THHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTS-GGG
T ss_pred -------------------HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chh
Confidence 0000001011111 124566677788888888999999999998877 689
Q ss_pred ccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccC
Q 003266 682 SSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQY 761 (835)
Q Consensus 682 ~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~ 761 (835)
-.. + .-+.-+..|.+|+-.+=.+|.| .+.+..+..+...++..|+..|.+-..
T Consensus 215 ~~~-----------~-~v~~i~~ti~dy~~d~~~~L~~---------------~~~~~l~~~~~~~~v~~Yl~~l~~~~~ 267 (399)
T 2fji_1 215 YMG-----------S-QAQQIADTLDEYLLDIKPQMNS---------------VLFVNFIDNVIGETIIKFLTALSFEHS 267 (399)
T ss_dssp TTC-----------C-HHHHHHHHHHHHHHHHGGGSCH---------------HHHHHHHHHHHHHHHHHHHHGGGGCCC
T ss_pred cCC-----------c-HHHHHHHHHHHHHHHHHHHhCh---------------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 321 1 2234455567777554444443 567888899999999999999986234
Q ss_pred CC---HhHHhhhHhhHHHHHHHHHHcCCCCh----------hhHHHHHHHhCCCc-HHHHHHhhhcC---CCCCChhHHH
Q 003266 762 IT---DHGAQQLSVDIEYLSNVLSALSVPIP----------PALATFHTCLSTPR-DQLKDLLKSDS---GNQLDLPTAN 824 (835)
Q Consensus 762 Lt---~~ga~QLa~Di~YL~NVl~aLg~~~~----------~~L~~~~~ll~~~~-~~~~~~~~~~~---~~~~~~~~~~ 824 (835)
++ ..|+.||..|+.-|...+..++-... +.|.++.. +++++ +.+....++.. ++ +++..+.
T Consensus 268 ~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD-~~~~~V~ 345 (399)
T 2fji_1 268 FKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWD-SRIDLLV 345 (399)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTT-CCSHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCC-CCHHHHH
Confidence 56 89999999999999999999987553 47888889 88888 66666554321 22 6788999
Q ss_pred HHHHHhc
Q 003266 825 LVCKIRR 831 (835)
Q Consensus 825 ~v~~mR~ 831 (835)
+|-.+|+
T Consensus 346 aiL~~R~ 352 (399)
T 2fji_1 346 GILKCRK 352 (399)
T ss_dssp HHHTTCT
T ss_pred HHHHhcc
Confidence 9999987
No 2
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=96.85 E-value=0.037 Score=59.86 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhhhhhhccCCCCCCchhhhh
Q 003266 656 VNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQLEPLAEGISTSDNNDEAQF 735 (835)
Q Consensus 656 ~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~LEp~~~~~~~~~~~~e~~~ 735 (835)
+++-+|+.+-++|..-+ .+..- .|..... ...|++||..+..||-++=..|-++- ..
T Consensus 185 Ae~~I~~~v~~KIDdfl-~la~y-DW~~~~~---------~~~ps~yi~dli~fL~~~f~sl~~LP------------~~ 241 (325)
T 2a2f_X 185 AEKQVGLRICSKIDEFF-ELSAY-DWLLVEP---------PGIASAFITDMISYLKSTFDSFAFKL------------PH 241 (325)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCT-TCC-------------CCSCCHHHHHHHHHHHHHHHTTTTTS------------HH
T ss_pred HHHHHHHHHHHHHHHHH-Hhccc-CCCCCCC---------CCCccHHHHHHHHHHHHHHHHHHcCC------------HH
Confidence 45666777777877777 56654 5987653 56799999999999999877655432 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc--cccCCCHhHHhhhHhhHHHHHHHHHHcCCC
Q 003266 736 FATEWMFKVAEGASALYMEQLR--GIQYITDHGAQQLSVDIEYLSNVLSALSVP 787 (835)
Q Consensus 736 ~a~~WL~~va~~~~~~y~e~i~--~I~~Lt~~ga~QLa~Di~YL~NVl~aLg~~ 787 (835)
++...+....+.+...+++.+. .++.+|..|.+|+..|+.||...++..+++
T Consensus 242 v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~~v~ 295 (325)
T 2a2f_X 242 IAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEPVP 295 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7777888877888888887776 569999999999999999999999886664
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=96.49 E-value=2.1 Score=50.54 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=102.5
Q ss_pred CCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCcccccccccccCCCCCCCCChhHHHHHHHHHHHhhhhhh
Q 003266 639 FHALPLASQRVAAFADA-VNELVYDVLISKVRQRLSDVSRLPIWSSVEEQSAFHLPTFSAYPQTYVTSVGEYLLTLPQQL 717 (835)
Q Consensus 639 ~~~l~~~~~~~~~l~~~-~~~~~~d~i~~pi~~~L~~~~~~~~W~~~~~~~~~~lP~fs~~P~eyIt~IGe~Ll~LPq~L 717 (835)
...|........++... .....-+.++.-|+..++.|-+...|...+++++. -|..+.+|+.-+...-.+|-..-..|
T Consensus 501 gSIFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~s~~~~~~~-~~~~~lspSaEL~~~L~~L~~~L~~L 579 (706)
T 3fhn_A 501 NSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDE-NIGPSSVPSAELVNSINVLRRLINKL 579 (706)
T ss_dssp SCTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGGTCCCC-------CCCCCCGGGHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCcc-cccccCCCCHHHHHHHHHHHHHHHHH
Confidence 46777777888888888 88888999999999999999887899877653321 12234445433222222222222222
Q ss_pred hhh-hccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHHHHHHHHcCCCC----hhhH
Q 003266 718 EPL-AEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVLSALSVPI----PPAL 792 (835)
Q Consensus 718 Ep~-~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL~NVl~aLg~~~----~~~L 792 (835)
+-. ... ..|...|= .|+..+...+.+.|..-...|+.||+||..|+++|+.|++ ++-.+ .+.|
T Consensus 580 ~~~lL~~----------~~f~~IwR-~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~~~~~~~~~~L 647 (706)
T 3fhn_A 580 DSMDIPL----------AISLKVKN-ELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPSHATNYKCMSL 647 (706)
T ss_dssp HTSCCCH----------HHHHHHHH-HHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCTTCCCHHHHHH
T ss_pred HHccCCH----------HHHHHHHH-HHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc-CCCcchhhHHHHH
Confidence 222 111 34556563 4666666666788888899999999999999999999888 55433 4567
Q ss_pred HHHHHHhCCCcHH
Q 003266 793 ATFHTCLSTPRDQ 805 (835)
Q Consensus 793 ~~~~~ll~~~~~~ 805 (835)
..--.+|+++.|.
T Consensus 648 ~E~l~LL~L~~d~ 660 (706)
T 3fhn_A 648 HELVKILKLKYDP 660 (706)
T ss_dssp HHHHHHHGGGGCG
T ss_pred HHHHHHcCCCCCc
Confidence 7777788888543
No 4
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.041 Score=56.76 Aligned_cols=100 Identities=19% Similarity=0.245 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh-ccccCC---------------CHh-HHhhhHhhHHHHHHHHHHcCCC--------C
Q 003266 734 QFFATEWMFKVAEGASALYMEQL-RGIQYI---------------TDH-GAQQLSVDIEYLSNVLSALSVP--------I 788 (835)
Q Consensus 734 ~~~a~~WL~~va~~~~~~y~e~i-~~I~~L---------------t~~-ga~QLa~Di~YL~NVl~aLg~~--------~ 788 (835)
+.|..+||++++..+...|+..| ..|+++ +.. ||+||..|+.-|+.+|..|=.. +
T Consensus 21 ~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~~~~~~~~~ 100 (271)
T 3ns4_A 21 DVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLRE 100 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCSCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHcccccccccccCC
Confidence 57999999999999999999999 678999 888 9999999999999999776421 2
Q ss_pred h--------------hhHHHHHHHhCCCc---HHHHHHhhhcCCCCCChhHHHHHHHHhcCC
Q 003266 789 P--------------PALATFHTCLSTPR---DQLKDLLKSDSGNQLDLPTANLVCKIRRVS 833 (835)
Q Consensus 789 ~--------------~~L~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~mR~~~ 833 (835)
+ ..|+.+.++|-+|. |.|-+.....-++..+...++.|=.|.|+.
T Consensus 101 ~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LKGv~ 162 (271)
T 3ns4_A 101 NTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIP 162 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHTCC
T ss_pred CcccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 2 23666677777763 344444443333324556778888888874
No 5
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=94.30 E-value=3.5 Score=42.30 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=85.9
Q ss_pred hhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhccc------chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCHHHHHH
Q 003266 132 QLSLTVEDVFASGDLPRAAETLANMRHCLSAVGE------VAEFANIRKQLEVLEDRLDAMVQPRLTDALSNRKIDIARD 205 (835)
Q Consensus 132 ~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~------~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~ 205 (835)
.+..+||-.+..++++++...|...++.+..+.+ .+.....+.+++.-+.+|...+...+.. ..+....+.
T Consensus 20 ~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~ 96 (235)
T 2d2s_A 20 EGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKS 96 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHH
Confidence 3457899999999999999999999999987763 3345567778888888888888777744 556788999
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHh
Q 003266 206 LRGILIRIGRFKSLELHYTKVHLKYIKQLWEEF 238 (835)
Q Consensus 206 ~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~ 238 (835)
.+..|..+|+++.-...|.+.|-..|+..=+++
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l 129 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQNRSNFIQDLILQI 129 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998876665
No 6
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=93.51 E-value=9.6 Score=44.14 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=80.5
Q ss_pred HHHHHhhcC----CHHHHHHHHHHHHHHHhhccc----ch---hHHHHHHHHHHHHHHHHHHhHHHHHHHHhc-------
Q 003266 136 TVEDVFASG----DLPRAAETLANMRHCLSAVGE----VA---EFANIRKQLEVLEDRLDAMVQPRLTDALSN------- 197 (835)
Q Consensus 136 ~ve~l~~~~----~~~~ia~~L~~~~~sl~~l~~----~p---~~~~r~~~le~l~nrLEa~v~p~l~~a~~~------- 197 (835)
+++.++..| ++..--..|..+.+.+.-|.. -| +|+....+++.|-++=+..+...|..-++.
T Consensus 24 ~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~~g~~~L~~~F~~lL~~s~p~~p~ 103 (564)
T 2b1e_A 24 KYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRSEAQLRVYFISILNSIKPFDPQ 103 (564)
T ss_dssp HHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHH
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345555443 455555555555555544432 12 345556666666666666666666666652
Q ss_pred -----C---------CHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCCCccc
Q 003266 198 -----R---------KIDIARDLRGILIRIGRFKSLELHYTKVHLKYIKQLWEEFESRQRSSKIANEKNEVERISSNNEF 263 (835)
Q Consensus 198 -----~---------~~~~~~~~~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (835)
+ .+...+..++.|..-+....+.+.|...|...+.+.-..+..... . ..+ .+..+-
T Consensus 104 ~~i~k~~p~p~l~~~~l~~L~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k---~-~~~--~~~~~~---- 173 (564)
T 2b1e_A 104 INITKKMPFPYYEDQQLGALSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAK---E-IST--AKNAPY---- 173 (564)
T ss_dssp HHHHHTCCCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC--------------------
T ss_pred HhhccCCCCCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhcc---c-ccc--ccCCch----
Confidence 1 013344455566667788899999999998876655332211000 0 000 000000
Q ss_pred ccCCcchhhhhhhHHHHHHHHHHHHHHHHHHhhhcCC
Q 003266 264 QSSAPSVMFSSWLPSFYDELLLYLEQEWKWCMVAFPD 300 (835)
Q Consensus 264 ~~~~~~~~~~~~L~~fy~~lL~~l~~E~~w~~~vFp~ 300 (835)
.. -...+..| -..+...+..|...|..|||.
T Consensus 174 e~--~~~~i~~~----~~a~~~l~~~E~~L~~~vf~~ 204 (564)
T 2b1e_A 174 EK--GSSGMNSY----TEALLGFIANEKSLVDDLYSQ 204 (564)
T ss_dssp ----CCSTHHHH----HHHHHHHHHHHHHHHHHHSCT
T ss_pred hh--hccHHHHH----HHHHHHHHHHHHHHHHHHcCC
Confidence 00 01234444 445578899999999999987
No 7
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=91.79 E-value=23 Score=40.99 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=43.7
Q ss_pred chhHHHHHhhhhHHHHHHHHHHHHHHH---Hh-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 440 ELSETVRRMEESIPQVIVLLEAAVERC---IS-FTGGSEADELILALDDIMLQYISTLQELLKSL 500 (835)
Q Consensus 440 ~~~d~~~~l~~s~~~lf~~~~~Av~RC---~~-lT~g~~~~~l~~al~~~l~~y~~~~~~~l~~l 500 (835)
++.+...+|.+.+.++|.-+.++|.+= .. +..+.++..+..-+-+++...++ |..+|..+
T Consensus 296 ~~~~~l~~L~~~~~~~f~ef~~~i~~~~~s~~~vp~dg~Vh~lT~~vmnyl~~L~~-y~~~l~~i 359 (571)
T 2pft_A 296 KLPGLITSMETIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLD-FQETAGAM 359 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSGGGSCTTCCCCHHHHHHHHHHHHHHH-THHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCccchHHHHHHHHHHHHHh-hHHHHHHH
Confidence 445567788889999999999999872 22 22477888888888777776664 77777665
No 8
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=82.22 E-value=51 Score=34.31 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVR-LRDDAISLRGSVSGILQKL 93 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~-~~~ea~~L~~~l~~i~~~~ 93 (835)
+.+..+-.+|.=+.+++...|.+...++=..+--...|+.. ++.++..|+.+|.-+.+++
T Consensus 22 ~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el 82 (273)
T 3s84_A 22 KELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRM 82 (273)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444555555555555544444444333333333444443 5666666666666555544
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.29 E-value=29 Score=35.67 Aligned_cols=46 Identities=4% Similarity=0.069 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 49 EISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 49 ~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
++...|... ......+| .+++.+..+...++..+..++..+...+.
T Consensus 15 ~lD~~i~~l-~~~~~~lp---~el~~le~~~~~l~~~~~~~~~~l~d~~~ 60 (256)
T 3na7_A 15 HLDKEIDSL-EPLIREKR---KDLDKALNDKEAKNKAILNLEEEKLALKL 60 (256)
T ss_dssp HHHHHHHHT-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 23333444 44555556666666666555555554443
No 10
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=75.73 E-value=22 Score=36.38 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003266 33 DNHLVDLEMKLQMVSEEISASLEEQSASALL 63 (835)
Q Consensus 33 d~~i~~l~~kLq~~~~~l~~~le~~~~~~l~ 63 (835)
..++..|-.+|.-.++++...|+..+..+-.
T Consensus 54 ~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~ 84 (243)
T 2a01_A 54 TSTFSKLREQLGPVTQEFWDNLEKETEGLRQ 84 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHhhHHHHHHHH
Confidence 3556666666666666666666665444333
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.03 E-value=42 Score=46.62 Aligned_cols=67 Identities=9% Similarity=0.010 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHH-HHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHHHHHhccchHHHHHH
Q 003266 146 LPRAAETLANMRHCLSAVGEVAEFANIRK-QLEVLEDRLDAMVQPRLTDALSNRKIDIARDLRGILIRIGRFKSLELH 222 (835)
Q Consensus 146 ~~~ia~~L~~~~~sl~~l~~~p~~~~r~~-~le~l~nrLEa~v~p~l~~a~~~~~~~~~~~~~~il~~i~R~~~l~~~ 222 (835)
++.+..||....+++.. +.+...|+. .++.|+++++..+---|..|- +--|.+.|..-.|..-+..|
T Consensus 2065 ~~~~~~kl~rA~~Li~g---L~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaa-------fisY~G~f~~~~R~~l~~~W 2132 (3245)
T 3vkg_A 2065 SSKVKNKVDRSIALLDN---LNSERGRWEQQSENFNTQMSTVVGDVVLASA-------FLAYIGFFDQNFRTDLMRKW 2132 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---hhhccccHHHHHHHHHHHHHhccHHHHHHHH-------HHHHcCCCCHHHHHHHHHHH
Confidence 55555666665555443 445556766 688888888877666665544 33355555555564444444
No 12
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=72.97 E-value=30 Score=32.28 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAA 128 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~ 128 (835)
..-+...+..+..|..++..++.++..+.++.++|.+-....|+.+.-+..+++.++.|-
T Consensus 68 i~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~ 127 (158)
T 3tul_A 68 IKKTDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKAT 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788999999999999999999999999999999999999999999999888753
No 13
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=71.26 E-value=99 Score=31.92 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhhhHhhHHHHHHHH
Q 003266 702 YVTSVGEYLLTLPQQLEPLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQLSVDIEYLSNVL 781 (835)
Q Consensus 702 yIt~IGe~Ll~LPq~LEp~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~QLa~Di~YL~NVl 781 (835)
++.+.-..+-.|-..+.+.... ..| +.+++-++..++...=..|.+ ...++.||-||--|+.+|.+.+
T Consensus 126 ~~~~F~~~w~~ll~p~k~~Lt~----------~~y-~~Ll~~~~~~la~~lE~~i~~-~~fn~lGal~LdrDvr~li~~~ 193 (263)
T 3hr0_A 126 WVQQFILNLEQQMAEFKASLSP----------VIY-DSLTGLMTSLVAVELEKVVLK-STFNRLGGLQFDKELRSLIAYL 193 (263)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCH----------HHH-HHHHHHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCh----------HHH-HHHHHHHHHHHHHHHHHHHHh-CCcCchhHHHHHHHHHHHHHHH
Confidence 3555555544444444444443 222 345555555544444345555 7899999999999999999999
Q ss_pred HHcCC----CChhhHHHHHHHhCCCcHH
Q 003266 782 SALSV----PIPPALATFHTCLSTPRDQ 805 (835)
Q Consensus 782 ~aLg~----~~~~~L~~~~~ll~~~~~~ 805 (835)
...+- +....|.++..+|+++..+
T Consensus 194 ~~~~~~~lRekF~RL~QI~~lLnle~~e 221 (263)
T 3hr0_A 194 TTVTTWTIRDKFARLSQMATILNLERVT 221 (263)
T ss_dssp HTTSCTTHHHHTHHHHHHHHHHTCSSGG
T ss_pred HhccchhhhHHHHHHHHHHHHHcCCChH
Confidence 77544 2346789999999998544
No 14
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=69.06 E-value=42 Score=31.40 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhccCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhccccCCCHhHHhh--hHhhHH
Q 003266 698 YPQTYVTSVGEYLLTLPQQLEPLAEGISTSDNNDEAQFFATEWMFKVAEGASALYMEQLRGIQYITDHGAQQ--LSVDIE 775 (835)
Q Consensus 698 ~P~eyIt~IGe~Ll~LPq~LEp~~~~~~~~~~~~e~~~~a~~WL~~va~~~~~~y~e~i~~I~~Lt~~ga~Q--La~Di~ 775 (835)
.|++|+..|...+.+|=+.|=++.-. .....-+..|-...-..+.+++.+...-|+.|.+. +..|+.
T Consensus 49 vpS~~m~tl~Ke~~kLH~~Ls~~LP~-----------~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ 117 (141)
T 3n1e_A 49 VPSPCFRNICKQMTKMHEAIFDLLPE-----------EQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVA 117 (141)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTTSCH-----------HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHH
Confidence 58999999999999999999887755 34456667777777778888899998778888877 889999
Q ss_pred HHHHHHHHcCCCCh
Q 003266 776 YLSNVLSALSVPIP 789 (835)
Q Consensus 776 YL~NVl~aLg~~~~ 789 (835)
|+.+=|..|..-+.
T Consensus 118 ff~~~L~~L~g~~d 131 (141)
T 3n1e_A 118 FYTGNLQALKGLKD 131 (141)
T ss_dssp HHHHHHHTSTTCTT
T ss_pred HHHHHhcccCCCCc
Confidence 99999999876553
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=64.17 E-value=1.3e+02 Score=30.66 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 71 DVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 71 dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
++..++..+..++..+..+..++.+.+.
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e~ 67 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNEQ 67 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 16
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=62.69 E-value=8.7 Score=30.50 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHc--CCCChhhHHHHHHHhCCCcHHHHHHhhh
Q 003266 772 VDIEYLSNVLSAL--SVPIPPALATFHTCLSTPRDQLKDLLKS 812 (835)
Q Consensus 772 ~Di~YL~NVl~aL--g~~~~~~L~~~~~ll~~~~~~~~~~~~~ 812 (835)
++++||+|||=.. |-+---.+..+..+++-+|+|-+...+.
T Consensus 5 an~EYLrNVl~~ym~g~~~~~m~kaI~avL~Fs~~e~q~il~~ 47 (60)
T 1upt_B 5 TEFEYLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKILER 47 (60)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6899999998653 4333337888999999999999888664
No 17
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=62.62 E-value=1.3e+02 Score=30.12 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=21.4
Q ss_pred HHHHHhhhcCC---CCC-CcchhhhHHHHHHHHHHHHHHHHH
Q 003266 15 PKKWINSACQT---RHS-QDSLDNHLVDLEMKLQMVSEEISA 52 (835)
Q Consensus 15 ~~~wIN~~~~~---~~~-~~~ld~~i~~l~~kLq~~~~~l~~ 52 (835)
...||+..-+- ... +.++ ..+..+..|.+.+..++..
T Consensus 26 ~~~Wl~e~e~~l~~~~~~g~dl-~~v~~llkkh~~~~~el~~ 66 (250)
T 1quu_A 26 HETWAYGKEQILLQKDYESASL-TEVRALLRKHEAFESDLAA 66 (250)
T ss_dssp HHHHTTTHHHHHHCCCCSSCCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcCCCCCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 46788866542 111 2233 3677777777777666555
No 18
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=61.35 E-value=29 Score=33.82 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 003266 33 DNHLVDLEMKLQMVSEEISASLEEQ 57 (835)
Q Consensus 33 d~~i~~l~~kLq~~~~~l~~~le~~ 57 (835)
..++..+-.+|.-+.+++...|...
T Consensus 55 ~~~~~~l~~~l~p~~~e~~~~l~~~ 79 (185)
T 3r2p_A 55 TSTFSKLREQLGPVTQEFWDNLEKE 79 (185)
T ss_dssp SCHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3455555555555555555555444
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=59.52 E-value=77 Score=28.64 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHH
Q 003266 43 LQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYE 122 (835)
Q Consensus 43 Lq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~ 122 (835)
-...+.++...|+..+.+ -.++..++..++..+..++.+...-...-+.+|.+....-+++......|.-|+.=++
T Consensus 18 ye~~I~~LR~qid~~~~e----~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ie 93 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTND----KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 344555666666655442 2345777888999999998888755555555565544444566666777777777777
Q ss_pred HHHH
Q 003266 123 TLQD 126 (835)
Q Consensus 123 ~L~e 126 (835)
+|++
T Consensus 94 sL~e 97 (119)
T 3ol1_A 94 SLQE 97 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 20
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=54.91 E-value=2e+02 Score=29.78 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVR-LRDDAISLRGSVSGILQKL 93 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~-~~~ea~~L~~~l~~i~~~~ 93 (835)
+...+..+-.+|.-+.+++...+.+.+.++-..+-..+.++.. +++++..|+.+|.-+.+++
T Consensus 42 l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eel 104 (273)
T 3s84_A 42 IGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADEL 104 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4456666666777777777777776666666666666666655 7777777777775444433
No 21
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=52.79 E-value=1.4e+02 Score=35.90 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhh
Q 003266 225 KVHLKYIKQLWEEFES 240 (835)
Q Consensus 225 ~~~~~~l~~~W~~~~~ 240 (835)
..+...+...|+.+..
T Consensus 570 ~~~~~~L~~rw~~L~~ 585 (863)
T 1sjj_A 570 TITPQEINGKWEHVRQ 585 (863)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3445566666666544
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=52.38 E-value=1.2e+02 Score=26.50 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHH
Q 003266 38 DLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRM 117 (835)
Q Consensus 38 ~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rl 117 (835)
.+--|+|.+..+..+.++.. .+.-..+-..-......-.++..|+.++..+..++...+.....+...|..-+..++..
T Consensus 6 aIKkKm~~lk~e~e~a~dra-e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRA-EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444 22222222222223335555556665555555555544443333333444444444433
Q ss_pred HHHHHHH
Q 003266 118 EAAYETL 124 (835)
Q Consensus 118 e~a~~~L 124 (835)
++-..+|
T Consensus 85 E~ev~~L 91 (101)
T 3u1c_A 85 ESEVASL 91 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.65 E-value=2.9e+02 Score=31.14 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALL 63 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~ 63 (835)
..|..|-.+|..+ ++-+.++++.+.++..
T Consensus 64 krINELKnqLEdl-sKnsKdseqy~k~~~E 92 (562)
T 3ghg_A 64 NRINKLKNSLFEY-QKNNKDSHSLTTNIME 92 (562)
T ss_dssp HHHHHHHHHHTHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhchhHHHHHHHHHH
Confidence 4555555555554 3555555555444443
No 24
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.28 E-value=49 Score=30.35 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHH
Q 003266 77 DDAISLRGSVSGILQKLKKAEGSSAESIAALSKVD 111 (835)
Q Consensus 77 ~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD 111 (835)
.+...|+++|+.+.+++.++...+...++.|..++
T Consensus 44 kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~ 78 (130)
T 2dnx_A 44 QDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP 78 (130)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45778899999999999999988888888888874
No 25
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.71 E-value=1.2e+02 Score=28.58 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 003266 36 LVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRL 75 (835)
Q Consensus 36 i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~ 75 (835)
...|+..|+.+-+ +++-+..+++-+.++|--+.|++.+
T Consensus 24 ~~elik~L~~le~--sassDa~vrq~Ia~LP~eVsd~s~l 61 (152)
T 4fla_A 24 TEELIKALQDLEN--AASGDATVRQKIASLPQEVQDVSLL 61 (152)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHTSCGGGTCGGGG
T ss_pred HHHHHHHHHHhhc--cccchHHHHHHHHcCCccccCHHHH
Confidence 4555555554422 2333344455566666555555443
No 26
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=42.52 E-value=3.7e+02 Score=29.34 Aligned_cols=18 Identities=17% Similarity=0.669 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 003266 223 YTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 223 Y~~~~~~~l~~~W~~~~~ 240 (835)
|+..+...+...|+.+..
T Consensus 329 ~i~~~~~~L~~~w~~L~~ 346 (476)
T 1hci_A 329 YSTVTMDELRTKWDKVKQ 346 (476)
T ss_dssp TCSSCHHHHHHHHHHHHH
T ss_pred chhccHHHHHHHHHHHHH
Confidence 344556667777766554
No 27
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=41.70 E-value=2.6e+02 Score=27.33 Aligned_cols=49 Identities=27% Similarity=0.220 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 44 QMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQK 92 (835)
Q Consensus 44 q~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~ 92 (835)
|..+.++-.+||....+.-+..-.+...+.+++.++..++.++...+..
T Consensus 37 qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 37 QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666665555555666666666666666555544
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.65 E-value=2.2e+02 Score=25.83 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Q 003266 78 DAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETL 124 (835)
Q Consensus 78 ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L 124 (835)
++..++.++..+...+.++-.++..-.+.-+.|=.||-+|+.=|.+-
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatY 122 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATY 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344445566667777776554443
No 29
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=38.60 E-value=1.8e+02 Score=24.61 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003266 48 EEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQD 126 (835)
Q Consensus 48 ~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~e 126 (835)
+++...|+..+. .-.++.-++..++..+..++.+...=...-+.+|.+....=+.+......|.-|++=+++|++
T Consensus 3 ~eLr~qi~~l~~----e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 3 RELRRQVDQLTN----DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355555555543 223556778888888888888887665555666665544444677777788888888888775
No 30
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=37.95 E-value=1.7e+02 Score=28.15 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVR-LRDDAISLRGSVSGILQKL 93 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~-~~~ea~~L~~~l~~i~~~~ 93 (835)
+.++...+..+|....+++...|..-+.++-..+--...++.. ++.++..|+.+|.-..+++
T Consensus 65 l~p~~~e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el 127 (185)
T 3r2p_A 65 LGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 127 (185)
T ss_dssp HCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455666666666666666666555555554444444555554 6677777777766554444
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.56 E-value=2.4e+02 Score=25.67 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTV 113 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~v 113 (835)
..+++|...|+.+. ..+.+|+..+.++-.+ -..++..++..+..|...+..++.++ ..-.+.-+.|=.|
T Consensus 45 r~iq~L~~el~~l~-~~~~sLE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~r~em-------~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 45 RTMQNLEIELQSQL-SMKASLENSLEETKGR---YCMQLAQIQEMIGSVEEQLAQLRCEM-------EQQNQEYKILLDV 113 (131)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 44555555554443 3444555444433332 12233344444555555555444444 3344556667777
Q ss_pred HHHHHHHHHHHH
Q 003266 114 KQRMEAAYETLQ 125 (835)
Q Consensus 114 K~rle~a~~~L~ 125 (835)
|-+|+.=|.+-+
T Consensus 114 Kl~Ld~EIatYR 125 (131)
T 3tnu_A 114 KTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777775544433
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.56 E-value=1.1e+02 Score=34.48 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 003266 146 LPRAAETLANM 156 (835)
Q Consensus 146 ~~~ia~~L~~~ 156 (835)
|..+=.+|+.+
T Consensus 178 Y~~~QKQLeQv 188 (562)
T 3ghg_A 178 YEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 33
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=35.69 E-value=1.7e+02 Score=29.70 Aligned_cols=21 Identities=0% Similarity=0.015 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 003266 167 AEFANIRKQLEVLEDRLDAMV 187 (835)
Q Consensus 167 p~~~~r~~~le~l~nrLEa~v 187 (835)
|-+++.+.++.++=+.+.+.+
T Consensus 220 p~~e~~~~~l~~~~e~~~~~~ 240 (243)
T 2a01_A 220 PVLESFKVSFLSALEEYTKKL 240 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555444
No 34
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=33.64 E-value=55 Score=41.34 Aligned_cols=7 Identities=14% Similarity=0.136 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 003266 36 LVDLEMK 42 (835)
Q Consensus 36 i~~l~~k 42 (835)
+..+..+
T Consensus 866 L~el~~~ 872 (1184)
T 1i84_S 866 LQRTKER 872 (1184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 35
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=32.42 E-value=2.8e+02 Score=27.03 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 003266 75 LRDDAISLRGSVSGILQKLKKA 96 (835)
Q Consensus 75 ~~~ea~~L~~~l~~i~~~~~~~ 96 (835)
+.+.+..|+..+..++.++...
T Consensus 64 ~~e~~~~l~~~~~~l~~qL~P~ 85 (191)
T 1nfn_A 64 MDETMKELKAYKSELEEQLTPV 85 (191)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHhcchh
Confidence 3334444444444444444333
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.64 E-value=2.2e+02 Score=23.58 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003266 110 VDTVKQRMEAAYETLQDA 127 (835)
Q Consensus 110 LD~vK~rle~a~~~L~eA 127 (835)
||.+..|+..+-.-|.++
T Consensus 57 ld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 57 LDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555444
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.06 E-value=1.7e+02 Score=31.72 Aligned_cols=80 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCh--------------
Q 003266 36 LVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVR-LRDDAISLRGSVSGILQKLKKAEGSS-------------- 100 (835)
Q Consensus 36 i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~-~~~ea~~L~~~l~~i~~~~~~~e~~~-------------- 100 (835)
+..++.+-+....+..+.+.+.+.++.+.+--+-+-|.. +. .+..|+.-|..++.+|+++|.++
T Consensus 93 ~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~ 171 (390)
T 1deq_A 93 IVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRA 171 (390)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchh
Q ss_pred -------HHHHHHHHhHHHHHHH
Q 003266 101 -------AESIAALSKVDTVKQR 116 (835)
Q Consensus 101 -------~~~~~~L~~LD~vK~r 116 (835)
..+-.+.+.|..++.+
T Consensus 172 l~~~vD~e~ye~qqKQL~qv~a~ 194 (390)
T 1deq_A 172 LEHKVDLEDYKNQQKQLEQVIAI 194 (390)
T ss_pred hhhhccHHHHHHHHHHHHhhhhh
No 38
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=30.64 E-value=4.1e+02 Score=26.30 Aligned_cols=140 Identities=10% Similarity=0.080 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCh--HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHhhcC
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEGSS--AESIAALSKVDTVKQRMEAAYETLQDAAGLT--QLSLTVEDVFASG 144 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~--~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~--~l~~~ve~l~~~~ 144 (835)
..++..+..++..++.++..-..+ .+-... ..+..-+..+|.+=..++.+...+. .+. .+...+.++..
T Consensus 62 ~~~I~~lE~~aD~i~~~i~~~L~~--~fitP~dReDI~~L~~~lDdI~D~ie~~a~~l~---l~~~~~~~~~~~~l~~-- 134 (227)
T 3l39_A 62 YKQIKDMEREGDRLTHLIFDELST--TFITPFDREDIHDLASCMDDVIDGINSSAKRIV---IYNPRPISESGKELSR-- 134 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCSSCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--cCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCCHHHHHHHH--
Confidence 444455555555555444322221 111111 2455567777777666666665554 111 11112222211
Q ss_pred CHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC-CHHHHHHHHHHHHhccc
Q 003266 145 DLPRAAETLANMRHCLSAVG-EVAEFANIRKQLEVLEDRLDAMVQPRLTDALSNR-KIDIARDLRGILIRIGR 215 (835)
Q Consensus 145 ~~~~ia~~L~~~~~sl~~l~-~~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~~-~~~~~~~~~~il~~i~R 215 (835)
-+.+.+..+..+=..|.-++ +.....+.+..+..++++-.......+..-|... |+-..-.+.+|+..++.
T Consensus 135 ~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l~~~~~~~Lf~~e~d~i~~i~~keI~~~Le~ 207 (227)
T 3l39_A 135 LIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIKIKEIMHELEK 207 (227)
T ss_dssp HHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 02223333333333333333 5556778888999999988888887777778765 55333335555555543
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=30.59 E-value=1.5e+02 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHH
Q 003266 67 RATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAE 102 (835)
Q Consensus 67 r~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~ 102 (835)
.+++.|+.++.|-..|+..+..-.+.+.++|.++..
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~ 42 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhh
Confidence 346778888888888888888887888888776543
No 40
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.34 E-value=95 Score=22.76 Aligned_cols=34 Identities=9% Similarity=0.214 Sum_probs=25.4
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 60 SALLRVPRATRDVVRLRDDAISLRGSVSGILQKL 93 (835)
Q Consensus 60 ~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~ 93 (835)
++++.+-|+-+|++..++.+..|+.++..+.+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677788888888888888888887665543
No 41
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=30.20 E-value=3.9e+02 Score=25.91 Aligned_cols=182 Identities=11% Similarity=0.062 Sum_probs=85.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHH
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVD 111 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD 111 (835)
++..+..+...+......+...++.........-+..+.++...-.++..|...+..-.-++-........-.+.+..+=
T Consensus 9 ~~~~l~~~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l 88 (227)
T 1t72_A 9 LFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIY 88 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44556666666666666666667766666656666677777777777888877776443333111111111122222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC--CHHHHHHHHHHHHH-HHhhccc-chhHHHHHHHHHHHHHHHHHHh
Q 003266 112 TVKQRMEAAYETLQDAAGLTQLSLTVEDVFASG--DLPRAAETLANMRH-CLSAVGE-VAEFANIRKQLEVLEDRLDAMV 187 (835)
Q Consensus 112 ~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~--~~~~ia~~L~~~~~-sl~~l~~-~p~~~~r~~~le~l~nrLEa~v 187 (835)
.+=..+|..-+-...-..|...... .-+... ++...+..+..|-+ ++.+|.+ -++........+.-=++++..+
T Consensus 89 ~i~~~lERIgD~a~nIa~~~~~~~~--~~~~~~~~el~~m~~~v~~ml~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~i 166 (227)
T 1t72_A 89 KIVSDLERMGDEAENIAERAILLAE--EPPLKPYVNINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQL 166 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--SCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--cCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333332222221122111100 001111 24455555544333 3345532 2333333333333334444444
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHhccc
Q 003266 188 QPRLTDALS--NRKIDIARDLRGILIRIGR 215 (835)
Q Consensus 188 ~p~l~~a~~--~~~~~~~~~~~~il~~i~R 215 (835)
...+...+. ..++..+..+..+...+.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~lER 196 (227)
T 1t72_A 167 ERELMTYVLEDPRNIKRAMHLSFVARHYER 196 (227)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcchHHHHHHHHHHHHHHHH
Confidence 555544443 2345667777788888877
No 42
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.35 E-value=2.8e+02 Score=23.99 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 40 EMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 40 ~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
--|+|.+..+..+.++.. .+.-..+-..-......-.++..|+.++..+..++...+.
T Consensus 8 KkKm~~lk~e~e~a~d~a-e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRA-EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444443 2222221111222233444555555555555444444333
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.70 E-value=3.4e+02 Score=30.74 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHHHHHHH
Q 003266 66 PRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRMEAAYE 122 (835)
Q Consensus 66 Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~ 122 (835)
.+..+..+.+.++...++++......+.+..+....+..+.++.+..-+.+|+.-.+
T Consensus 498 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 498 DGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence 334444455666666666666666666665555554444555544444444444333
No 44
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.70 E-value=2e+02 Score=24.31 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
...++.++.|+..|++++.....++..+..
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555555666665555555555544443
No 45
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=27.64 E-value=4.2e+02 Score=28.15 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLR-VPRATRDVVRLRDDAISLRGSVSGILQKLKKAE 97 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~-~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e 97 (835)
..+..++...-...++++..+++..+++... .+...+++..++.++..|+..+...++-+..+.
T Consensus 184 ~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 248 (363)
T 2iub_A 184 SLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLY 248 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666778888888886666644 235567788888888888888877666665554
No 46
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.17 E-value=3.1e+02 Score=23.80 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHH----hHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHH
Q 003266 68 ATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALS----KVDTVKQRMEAAYETLQDAAG-LTQLSLTVED 139 (835)
Q Consensus 68 ~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~----~LD~vK~rle~a~~~L~eA~~-w~~l~~~ve~ 139 (835)
+-.|.+.....+..+..++........+.+..+....+.|. .||.+..++..+...|.++.. .+....+|..
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666677777777666666666666554444443 678888888888888887643 3334445543
No 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.15 E-value=1.5e+03 Score=31.78 Aligned_cols=59 Identities=5% Similarity=0.038 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKL 93 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~ 93 (835)
.+|..+..-|....+++....+.. ...+.-+-.+..+|+.|+.+...++-+|..-..+.
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl-~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea 1957 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHL-NIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666665655555544 33444444456666777777776666665444443
No 48
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.78 E-value=1.3e+02 Score=25.02 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=27.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003266 30 DSLDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQ 91 (835)
Q Consensus 30 ~~ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~ 91 (835)
..++.+|..|++||--+- ..|+++.+.+.+- -+++++++..+..|.+++..+..
T Consensus 10 ~~le~Ri~~LE~klAfqE----~tIeeLn~~v~~Q----q~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQE----QALTELSEALADA----RLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhh
Confidence 446778888888775432 3333343322222 55566666666666666655543
No 49
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.77 E-value=2.1e+02 Score=24.86 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 35 HLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAE 97 (835)
Q Consensus 35 ~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e 97 (835)
.+++...+|...+.++..+++..+.++.+. +.-+|.++..+..|+.+-.-+..++..|.
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~e----I~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKE----IDQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666665555444 44455566666666665555555554443
No 50
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=26.31 E-value=4.4e+02 Score=25.33 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 003266 32 LDNHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGIL 90 (835)
Q Consensus 32 ld~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~ 90 (835)
++..+..+...+.....-+...+..........-+..++++...-.++..|...+..-.
T Consensus 5 ~~~~L~~~~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~ 63 (217)
T 1xwm_A 5 FADDLASLHNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFA 63 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666665555556666666666667777766665433
No 51
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.17 E-value=79 Score=27.91 Aligned_cols=86 Identities=12% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHh-hcccch-hHHHHHHHHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLS-AVGEVA-EFANIRKQLEVL 179 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~-~l~~~p-~~~~r~~~le~l 179 (835)
....++..+..-+.+.+.+.+.|...+.=......|-.+|=..+..++-..|..-...+. .+..+- ......+.++.+
T Consensus 24 ~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 24 LVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334467777777777777777777543211222333344444556666666655555542 112221 234455566666
Q ss_pred HHHHHHHh
Q 003266 180 EDRLDAMV 187 (835)
Q Consensus 180 ~nrLEa~v 187 (835)
+..|.+.+
T Consensus 104 k~~l~~~~ 111 (117)
T 2zqm_A 104 TAQIQSAL 111 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 52
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=24.88 E-value=4.7e+02 Score=25.15 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=20.8
Q ss_pred CHHHHHhhhcC---CCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 003266 14 DPKKWINSACQ---TRHSQDSLDNHLVDLEMKLQMVSEEISA 52 (835)
Q Consensus 14 D~~~wIN~~~~---~~~~~~~ld~~i~~l~~kLq~~~~~l~~ 52 (835)
++..||+..-. +...+.+++ .+..+..|.+.+..++.+
T Consensus 12 ~l~~Wl~~ke~~l~~~~~g~dl~-~v~~l~~k~~~f~~el~~ 52 (218)
T 3edu_A 12 DLEQWISEKELVASSPEMGQDFD-HVTLLRDKFRDFARETGA 52 (218)
T ss_dssp HHHHHHHHHHHHHTCCCCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 46688886533 222222333 666666666666666643
No 53
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.38 E-value=1.2e+02 Score=34.08 Aligned_cols=11 Identities=55% Similarity=0.884 Sum_probs=9.0
Q ss_pred CCCCCCCCCCC
Q 003266 1 MMLDLGPFSDE 11 (835)
Q Consensus 1 ~~~dls~F~~~ 11 (835)
||+|+..|-++
T Consensus 6 mmldi~~~r~~ 16 (484)
T 3lss_A 6 MVLDIQLFRDE 16 (484)
T ss_dssp CCCCGGGGGSH
T ss_pred ccccHHHHHcC
Confidence 78899888865
No 54
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.35 E-value=3e+02 Score=24.35 Aligned_cols=55 Identities=7% Similarity=0.041 Sum_probs=36.0
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHhHHHHHHHH
Q 003266 63 LRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEGSSAESIAALSKVDTVKQRM 117 (835)
Q Consensus 63 ~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~~~~~~~~~L~~LD~vK~rl 117 (835)
.+++.+..++...+.++..|..++..++..+..++..=.-|-..|+.+...=+.+
T Consensus 4 ~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 4 GSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667777777777888877777777777655445666666666554444
No 55
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=24.08 E-value=7.7e+02 Score=27.33 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=70.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHh----HHHHHHHHhcCCHHH-HHHH--
Q 003266 134 SLTVEDVFASGDLPRAAETLANMRHCLSAVGEVAEFANIRKQLEVLEDRLDAMV----QPRLTDALSNRKIDI-ARDL-- 206 (835)
Q Consensus 134 ~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p~~~~r~~~le~l~nrLEa~v----~p~l~~a~~~~~~~~-~~~~-- 206 (835)
...|.+-+ ...|..+|..|+.--+- +.+-.+.+-.+-+|++++-+-..+ .+.++.|+.+-|.+. ++++
T Consensus 438 ykkIsEky-GeKykkIAkELAe~fKG----KKIRSvDDALaSfEKyk~NlnkKfnakDR~AIvNALkSvDa~dmAkNL~k 512 (602)
T 1cii_A 438 LKSVSEKY-GAKAEQLAREMAGQAKG----KKIRNVEEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDISSNLNR 512 (602)
T ss_dssp HHHHHHHH-CTHHHHHHHHHHHTTTT----CBCCCHHHHHHHHHHTHHHHTTSSCSHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhcCC----CccCCHHHHHHHHHHHhcChhhhcchhhHHHHHHHHHHcCHHHHHHHHHH
Confidence 34444444 23488888888873222 446678888888888888776554 577888998888754 3333
Q ss_pred -HHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhh
Q 003266 207 -RGILIRIGRFKSLELHYTKVHLKYIKQLWEEFES 240 (835)
Q Consensus 207 -~~il~~i~R~~~l~~~Y~~~~~~~l~~~W~~~~~ 240 (835)
-+.|+-.+..-.+..++.+.....-..-|..+..
T Consensus 513 fSKaFg~tgKvIka~DV~eK~kkG~ETGNWrPLfL 547 (602)
T 1cii_A 513 FSRGLGYAGKFTSLADWITEFGKAVRTENWRPLFV 547 (602)
T ss_dssp HHHHHTCCSCBCCHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHhhcCCCchhHHH
Confidence 4667777777788888888877766777877654
No 56
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=23.97 E-value=3.1e+02 Score=26.57 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 003266 224 TKVHLKYIKQLWEEFES 240 (835)
Q Consensus 224 ~~~~~~~l~~~W~~~~~ 240 (835)
+..+...+...|..+.+
T Consensus 182 I~~~~~~l~~~W~~L~~ 198 (210)
T 3pdy_A 182 VESFQAALQTQWSWMLQ 198 (210)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567778888887654
No 57
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=23.78 E-value=3.7e+02 Score=26.84 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 34 NHLVDLEMKLQMVSEEISASLEEQSASALLRVPRATRDVVRLRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 34 ~~i~~l~~kLq~~~~~l~~~le~~~~~~l~~~Pr~~~dve~~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
..+..++...-...++++..+++..+++...-+...+++-.+|.++..|+..+.-.++-+.++..
T Consensus 151 ~lld~ivd~y~~~l~~l~~~id~lE~~l~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 215 (264)
T 3nvo_A 151 DVCDALTDHASEFIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLAS 215 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 55666666667777788888888877766555667788999999999999999877776666553
No 58
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.56 E-value=3.2e+02 Score=22.98 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cChHHHHHHHHhHHHHHHHHHHHH
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQKLKKAE---GSSAESIAALSKVDTVKQRMEAAY 121 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~~~~~~e---~~~~~~~~~L~~LD~vK~rle~a~ 121 (835)
-|+++.+-..+..|..++..+...+...+ .+.........+++.++..++.+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777775533 233344445666666666666654
No 59
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=22.40 E-value=4.1e+02 Score=27.91 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhccc
Q 003266 148 RAAETLANMRHCLSAVGE 165 (835)
Q Consensus 148 ~ia~~L~~~~~sl~~l~~ 165 (835)
.+...+.+++.+|..+.+
T Consensus 177 kl~~~veelr~~L~Py~e 194 (307)
T 2l7b_A 177 GAERGLSAIRERLGPLVE 194 (307)
T ss_dssp HHHHHHHHHHHHCSSSCT
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 555666666666555433
No 60
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.15 E-value=99 Score=26.78 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=41.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHh-hcccch-hHHHHHHHHHHH
Q 003266 102 ESIAALSKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLS-AVGEVA-EFANIRKQLEVL 179 (835)
Q Consensus 102 ~~~~~L~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~-~l~~~p-~~~~r~~~le~l 179 (835)
....++..+..-+.+.+.+.+.|...+.=......|-.+|=..+..++-..|..-...+. .+..+- ........++.+
T Consensus 19 ~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666777777777777776543211222333344444456666665555555543 111111 233444455555
Q ss_pred HHHHHH
Q 003266 180 EDRLDA 185 (835)
Q Consensus 180 ~nrLEa 185 (835)
+..|.+
T Consensus 99 k~~l~~ 104 (107)
T 1fxk_A 99 QVNIQE 104 (107)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555544
No 61
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=21.37 E-value=4.7e+02 Score=23.82 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 003266 75 LRDDAISLRGSVSGILQKLKKAEG 98 (835)
Q Consensus 75 ~~~ea~~L~~~l~~i~~~~~~~e~ 98 (835)
++.++..|+..+..++.++.+++.
T Consensus 58 HQKEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 58 HQKEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445555555555555555555553
No 62
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.30 E-value=4.7e+02 Score=23.81 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 003266 108 SKVDTVKQRMEAAYETLQDAAGLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEV-AEFANIRKQLEVLEDRLDAM 186 (835)
Q Consensus 108 ~~LD~vK~rle~a~~~L~eA~~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~-p~~~~r~~~le~l~nrLEa~ 186 (835)
.+++..++.|..++..|+ | +|+ +.-+.+..+.+--.-|+=. .+...|+..+..+++++..+
T Consensus 63 ~E~~~~~~EL~~~l~sie----~-----dLe---------DLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIE----W-----DLE---------DLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp CHHHHHHHHHHHHHHHHH----H-----HHH---------HHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----H-----HHH---------HHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777776 4 222 2222222233332334222 25778999999999998865
No 63
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.27 E-value=2.1e+02 Score=27.93 Aligned_cols=17 Identities=24% Similarity=0.149 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003266 39 LEMKLQMVSEEISASLE 55 (835)
Q Consensus 39 l~~kLq~~~~~l~~~le 55 (835)
|+.+|+.....++.+++
T Consensus 21 LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 21 LVANLVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555544
No 64
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=21.20 E-value=6e+02 Score=25.05 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=14.0
Q ss_pred HHHHHHhhc---CCHHHHHHHHHHHHHH
Q 003266 135 LTVEDVFAS---GDLPRAAETLANMRHC 159 (835)
Q Consensus 135 ~~ve~l~~~---~~~~~ia~~L~~~~~s 159 (835)
..|+.-... +++..+|+-+..+...
T Consensus 100 AaIEAAraGe~GrGFaVVA~Evr~La~~ 127 (213)
T 3g67_A 100 ATIEAARAGEAGKGFMIVANEVQNLSNE 127 (213)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHH
Confidence 355555432 2477777766666544
No 65
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=20.88 E-value=1.6e+02 Score=25.34 Aligned_cols=60 Identities=8% Similarity=0.081 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHhhcCCHHHHHHHHHHHHHHHhhcccch-----hHHHHHHHHHHHHHHHHHHhHH
Q 003266 129 GLTQLSLTVEDVFASGDLPRAAETLANMRHCLSAVGEVA-----EFANIRKQLEVLEDRLDAMVQP 189 (835)
Q Consensus 129 ~w~~l~~~ve~l~~~~~~~~ia~~L~~~~~sl~~l~~~p-----~~~~r~~~le~l~nrLEa~v~p 189 (835)
.|.. ..+|+.+...-....+..++.=.+....+++.+| +-+.|.+.|...|+.|...+..
T Consensus 19 rwi~-~~~I~~l~~~~~~~d~e~qI~Flqel~~l~R~iP~~vf~d~e~R~~lL~a~Q~AlD~aI~~ 83 (92)
T 1xl3_C 19 RWAG-IHDIEHLANAFSLPTPEIXVRFYQDLXRMFRLFPLGVFSDEEQRQNLLQMCQNAIDMAIES 83 (92)
T ss_dssp TTCC-HHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5644 3578888888777778888888888888888888 5578999999999988877654
No 66
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.84 E-value=6e+02 Score=27.81 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003266 69 TRDVVRLRDDAISLRGSVSGI 89 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i 89 (835)
+.+++....++..|...|...
T Consensus 47 l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 47 LQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334555555555555554443
No 67
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.22 E-value=6.1e+02 Score=24.74 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHhhcCC-
Q 003266 69 TRDVVRLRDDAISLRGSVSGILQ-KLKKAEGSSAESIAALSKVDTVKQRMEAAYETLQDAAGLT-QLSLTVEDVFASGD- 145 (835)
Q Consensus 69 ~~dve~~~~ea~~L~~~l~~i~~-~~~~~e~~~~~~~~~L~~LD~vK~rle~a~~~L~eA~~w~-~l~~~ve~l~~~~~- 145 (835)
.-+++.++.++.....++..+.. ++..-.+.+...+.=|++||....-++... .|.+..... .|++.+..+...-+
T Consensus 46 l~eLQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~h~-~Lse~l~l~kqLs~sLh~mC~~~pl 124 (204)
T 2jqq_A 46 LINLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEIYGSLRNHS-QLTEALSLGKRLSKSLHEMCGIEPL 124 (204)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHTCSSSS-HHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44566677777777777765433 222222223344556888888887776554 344443333 45677888877755
Q ss_pred ----HHHHHHHH----HHHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 003266 146 ----LPRAAETL----ANMRHCLSAVGE--VAEFANIRKQLEVLEDRLDAMVQPRLTDALSN 197 (835)
Q Consensus 146 ----~~~ia~~L----~~~~~sl~~l~~--~p~~~~r~~~le~l~nrLEa~v~p~l~~a~~~ 197 (835)
+-+++.+| ....+.+..+.+ .|=...-|-...++-+.+...+.-....++..
T Consensus 125 d~eLc~~l~~qL~~L~~~~~~ll~~l~dl~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkClE~ 186 (204)
T 2jqq_A 125 EEEICSGLIEQLYKLITASRRILESCADSNSPYIHHLRNDYQDLLQEFQISLKILTEKCLEN 186 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23333333 334444455544 44455555566666666666666666666643
No 68
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=20.06 E-value=5.6e+02 Score=24.20 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 003266 224 TKVHLKYIKQLWEEFES 240 (835)
Q Consensus 224 ~~~~~~~l~~~W~~~~~ 240 (835)
...+...+...|..+..
T Consensus 183 I~~~~~~l~~~w~~l~~ 199 (213)
T 1cun_A 183 ITAKMKGLKGKVSDLEK 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45577788888888765
Done!