Query 003268
Match_columns 835
No_of_seqs 662 out of 4400
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 20:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1197 Mfd Transcription-repa 100.0 2E-139 3E-144 1243.4 64.7 697 106-828 436-1136(1139)
2 PRK10689 transcription-repair 100.0 5E-110 1E-114 1030.3 69.9 693 106-827 441-1144(1147)
3 TIGR00580 mfd transcription-re 100.0 5E-110 1E-114 1011.1 62.8 630 106-761 295-926 (926)
4 COG1200 RecG RecG-like helicas 100.0 6E-71 1.3E-75 628.5 44.2 425 220-651 196-635 (677)
5 PRK10917 ATP-dependent DNA hel 100.0 2.8E-60 6.2E-65 568.5 50.4 425 220-651 195-633 (681)
6 TIGR00643 recG ATP-dependent D 100.0 9.4E-60 2E-64 560.3 50.2 425 220-651 168-610 (630)
7 KOG0333 U5 snRNP-like RNA heli 100.0 5.6E-53 1.2E-57 461.7 29.2 459 103-604 96-626 (673)
8 KOG0331 ATP-dependent RNA heli 100.0 3.2E-47 7E-52 428.8 31.9 339 265-620 96-464 (519)
9 PRK11776 ATP-dependent RNA hel 100.0 3.3E-46 7.2E-51 430.2 38.0 325 265-603 9-350 (460)
10 COG0513 SrmB Superfamily II DN 100.0 3.5E-45 7.6E-50 425.2 33.2 322 265-601 34-379 (513)
11 KOG0330 ATP-dependent RNA heli 100.0 2.8E-45 6E-50 390.3 27.8 324 264-603 65-408 (476)
12 PRK04837 ATP-dependent RNA hel 100.0 8.7E-45 1.9E-49 414.1 33.8 324 264-602 12-362 (423)
13 PTZ00110 helicase; Provisional 100.0 5.8E-44 1.3E-48 418.3 36.6 321 268-603 138-485 (545)
14 PRK10590 ATP-dependent RNA hel 100.0 5.9E-44 1.3E-48 410.9 35.6 324 265-603 6-353 (456)
15 PLN00206 DEAD-box ATP-dependen 100.0 2.3E-43 5.1E-48 411.5 36.1 323 267-603 128-476 (518)
16 PRK11634 ATP-dependent RNA hel 100.0 2.4E-43 5.2E-48 417.5 35.8 324 265-602 11-352 (629)
17 PRK04537 ATP-dependent RNA hel 100.0 3.1E-43 6.7E-48 413.8 35.5 324 265-603 14-365 (572)
18 PRK11192 ATP-dependent RNA hel 100.0 8.3E-43 1.8E-47 399.0 36.3 324 265-603 6-353 (434)
19 PRK01297 ATP-dependent RNA hel 100.0 2.3E-42 4.9E-47 399.9 35.9 324 265-602 92-442 (475)
20 PTZ00424 helicase 45; Provisio 100.0 1.2E-41 2.7E-46 384.8 34.4 323 266-603 34-375 (401)
21 KOG0338 ATP-dependent RNA heli 100.0 9.5E-43 2.1E-47 380.1 23.5 318 269-602 191-533 (691)
22 KOG0345 ATP-dependent RNA heli 100.0 7.9E-42 1.7E-46 371.0 30.4 327 265-602 11-364 (567)
23 TIGR00614 recQ_fam ATP-depende 100.0 2.2E-41 4.7E-46 391.0 33.0 310 274-603 3-334 (470)
24 TIGR03817 DECH_helic helicase/ 100.0 2.2E-40 4.8E-45 399.1 36.0 320 267-602 21-386 (742)
25 PLN03137 ATP-dependent DNA hel 100.0 3E-40 6.4E-45 397.1 33.4 320 264-603 441-788 (1195)
26 KOG0328 Predicted ATP-dependen 100.0 6E-41 1.3E-45 344.0 23.1 319 270-603 38-374 (400)
27 PRK11057 ATP-dependent DNA hel 100.0 1.1E-39 2.4E-44 386.9 34.8 318 265-603 7-344 (607)
28 KOG0340 ATP-dependent RNA heli 100.0 3.3E-40 7.2E-45 348.1 26.3 335 264-619 11-372 (442)
29 KOG0343 RNA Helicase [RNA proc 100.0 1.3E-39 2.8E-44 358.2 28.8 346 244-603 50-423 (758)
30 PRK11664 ATP-dependent RNA hel 100.0 1.8E-40 4E-45 401.0 24.3 388 289-702 9-431 (812)
31 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.7E-40 1E-44 396.7 26.3 385 291-701 8-427 (819)
32 TIGR01389 recQ ATP-dependent D 100.0 4.8E-39 1.1E-43 381.4 34.4 311 272-603 3-332 (591)
33 KOG0342 ATP-dependent RNA heli 100.0 5.9E-40 1.3E-44 358.9 23.7 324 265-603 87-438 (543)
34 KOG0336 ATP-dependent RNA heli 100.0 9.6E-40 2.1E-44 348.3 23.0 333 269-619 230-587 (629)
35 PRK02362 ski2-like helicase; P 100.0 1.7E-39 3.6E-44 393.9 28.3 411 266-702 7-515 (737)
36 KOG0335 ATP-dependent RNA heli 100.0 1.9E-39 4.1E-44 360.5 25.6 318 270-602 85-444 (482)
37 KOG0339 ATP-dependent RNA heli 100.0 1.6E-38 3.5E-43 346.4 25.3 324 267-605 230-578 (731)
38 PRK01172 ski2-like helicase; P 100.0 3.5E-38 7.6E-43 379.4 30.3 408 265-703 6-494 (674)
39 KOG0326 ATP-dependent RNA heli 100.0 2.3E-39 4.9E-44 337.0 16.2 317 273-604 99-431 (459)
40 PRK05580 primosome assembly pr 100.0 2E-37 4.3E-42 370.7 34.7 315 276-600 139-547 (679)
41 PRK13767 ATP-dependent helicas 100.0 3.6E-37 7.7E-42 377.9 36.1 316 270-598 22-396 (876)
42 KOG0341 DEAD-box protein abstr 100.0 4.1E-39 8.9E-44 341.5 14.3 321 269-603 180-529 (610)
43 KOG0348 ATP-dependent RNA heli 100.0 1.1E-37 2.4E-42 342.2 25.4 328 264-603 140-555 (708)
44 KOG0344 ATP-dependent RNA heli 100.0 1.1E-37 2.5E-42 348.0 24.6 451 56-644 50-530 (593)
45 PRK00254 ski2-like helicase; P 100.0 4.6E-37 1E-41 371.7 27.9 318 266-603 7-389 (720)
46 TIGR00595 priA primosomal prot 100.0 9.8E-37 2.1E-41 353.2 29.2 287 307-599 1-378 (505)
47 PHA02653 RNA helicase NPH-II; 100.0 6.2E-36 1.3E-40 353.7 34.7 309 281-603 160-515 (675)
48 KOG0332 ATP-dependent RNA heli 100.0 7E-37 1.5E-41 324.5 23.3 320 269-603 100-444 (477)
49 KOG0347 RNA helicase [RNA proc 100.0 3.3E-37 7.2E-42 339.3 20.1 313 268-604 190-572 (731)
50 KOG0923 mRNA splicing factor A 100.0 1E-36 2.2E-41 340.8 20.1 378 304-703 281-700 (902)
51 KOG0350 DEAD-box ATP-dependent 100.0 4.7E-36 1E-40 327.8 24.6 329 271-604 149-542 (620)
52 KOG0346 RNA helicase [RNA proc 100.0 1.6E-35 3.4E-40 319.5 25.2 328 263-604 22-412 (569)
53 KOG0922 DEAH-box RNA helicase 100.0 4.2E-36 9.2E-41 340.2 20.8 377 303-701 66-482 (674)
54 COG0514 RecQ Superfamily II DN 100.0 1.3E-34 2.8E-39 332.4 28.7 313 272-604 7-339 (590)
55 COG1201 Lhr Lhr-like helicases 100.0 2.5E-34 5.5E-39 340.4 31.5 316 270-600 12-360 (814)
56 KOG4284 DEAD box protein [Tran 100.0 3.8E-35 8.2E-40 326.9 21.2 318 271-603 37-380 (980)
57 KOG0334 RNA helicase [RNA proc 100.0 7.8E-35 1.7E-39 342.8 23.5 319 270-603 376-721 (997)
58 PRK11131 ATP-dependent RNA hel 100.0 8.2E-35 1.8E-39 357.7 23.6 375 303-702 89-508 (1294)
59 COG1198 PriA Primosomal protei 100.0 2E-33 4.2E-38 330.9 31.1 312 279-599 196-600 (730)
60 COG1204 Superfamily II helicas 100.0 5.3E-34 1.2E-38 341.3 26.7 314 270-602 20-408 (766)
61 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.6E-34 7.9E-39 353.1 25.6 375 303-701 82-498 (1283)
62 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.5E-33 5.4E-38 333.6 29.2 302 272-592 6-380 (844)
63 PHA02558 uvsW UvsW helicase; P 100.0 5.7E-33 1.2E-37 323.1 31.0 303 279-603 112-456 (501)
64 KOG0337 ATP-dependent RNA heli 100.0 3.8E-34 8.3E-39 307.6 19.2 327 263-604 24-370 (529)
65 COG1643 HrpA HrpA-like helicas 100.0 1.1E-33 2.5E-38 337.1 23.4 376 303-701 65-479 (845)
66 PRK09751 putative ATP-dependen 100.0 6.1E-33 1.3E-37 346.5 29.5 287 308-600 1-383 (1490)
67 COG1111 MPH1 ERCC4-like helica 100.0 2E-32 4.4E-37 302.1 30.1 309 280-604 14-483 (542)
68 KOG0327 Translation initiation 100.0 2.6E-33 5.6E-38 300.2 20.4 325 266-604 32-372 (397)
69 KOG0924 mRNA splicing factor A 100.0 3.2E-33 7E-38 312.8 21.8 375 303-701 371-789 (1042)
70 TIGR01587 cas3_core CRISPR-ass 100.0 3.7E-32 8.1E-37 303.3 30.3 290 305-602 1-336 (358)
71 PRK09401 reverse gyrase; Revie 100.0 1.2E-31 2.7E-36 333.9 31.1 300 270-588 69-430 (1176)
72 COG1202 Superfamily II helicas 100.0 2.4E-32 5.3E-37 302.1 20.4 323 267-604 201-555 (830)
73 KOG0925 mRNA splicing factor A 100.0 4.4E-32 9.5E-37 295.3 21.0 371 303-702 62-480 (699)
74 PRK14701 reverse gyrase; Provi 100.0 3.4E-31 7.5E-36 336.1 31.4 311 270-598 68-452 (1638)
75 TIGR00603 rad25 DNA repair hel 100.0 1.8E-30 4E-35 306.4 30.3 316 279-618 253-623 (732)
76 PRK12898 secA preprotein trans 100.0 3.9E-30 8.5E-35 300.5 30.7 309 273-603 95-587 (656)
77 PRK13766 Hef nuclease; Provisi 100.0 4.3E-29 9.4E-34 305.3 35.3 309 278-604 12-481 (773)
78 TIGR01054 rgy reverse gyrase. 100.0 8.7E-30 1.9E-34 317.7 29.4 286 270-574 67-410 (1171)
79 TIGR00963 secA preprotein tran 100.0 2.3E-29 5E-34 295.5 29.8 310 273-603 48-518 (745)
80 TIGR03158 cas3_cyano CRISPR-as 100.0 3.5E-29 7.7E-34 279.5 29.4 284 285-587 1-357 (357)
81 PRK09200 preprotein translocas 100.0 4.4E-29 9.6E-34 297.3 29.7 307 273-603 70-542 (790)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 2.1E-28 4.6E-33 286.0 27.0 313 277-604 105-493 (1230)
83 COG1205 Distinct helicase fami 100.0 6E-28 1.3E-32 293.0 30.9 322 270-602 59-422 (851)
84 TIGR03714 secA2 accessory Sec 100.0 6.1E-28 1.3E-32 285.2 29.5 289 306-604 86-539 (762)
85 KOG0351 ATP-dependent DNA heli 100.0 2E-28 4.3E-33 295.6 24.3 315 270-603 252-593 (941)
86 PRK09694 helicase Cas3; Provis 100.0 9.7E-27 2.1E-31 281.7 35.4 302 279-591 284-664 (878)
87 COG4098 comFA Superfamily II D 100.0 6.3E-27 1.4E-31 247.1 29.0 297 281-602 97-416 (441)
88 KOG0352 ATP-dependent DNA heli 100.0 1.1E-27 2.4E-32 257.6 22.0 318 270-604 7-364 (641)
89 KOG0926 DEAH-box RNA helicase 100.0 5.1E-28 1.1E-32 275.2 19.1 384 304-707 272-802 (1172)
90 COG1061 SSL2 DNA or RNA helica 100.0 1.5E-26 3.2E-31 265.0 27.3 290 276-589 31-376 (442)
91 KOG0354 DEAD-box like helicase 100.0 2.3E-26 4.9E-31 267.2 28.7 304 279-601 60-528 (746)
92 KOG0329 ATP-dependent RNA heli 99.9 5.1E-28 1.1E-32 245.9 12.3 284 268-602 51-355 (387)
93 PRK04914 ATP-dependent helicas 99.9 1.9E-25 4.2E-30 272.0 30.6 308 279-601 150-602 (956)
94 KOG0920 ATP-dependent RNA heli 99.9 7.2E-26 1.6E-30 269.5 20.3 374 303-699 188-636 (924)
95 KOG0353 ATP-dependent DNA heli 99.9 5.1E-25 1.1E-29 233.7 24.3 324 263-605 74-470 (695)
96 KOG0948 Nuclear exosomal RNA h 99.9 1.3E-25 2.9E-30 254.6 14.5 301 276-602 124-539 (1041)
97 KOG0947 Cytoplasmic exosomal R 99.9 1.7E-24 3.6E-29 250.9 23.7 306 271-602 287-723 (1248)
98 PRK12906 secA preprotein trans 99.9 5.2E-24 1.1E-28 252.5 27.9 309 272-603 71-554 (796)
99 PRK12904 preprotein translocas 99.9 6.9E-24 1.5E-28 252.4 29.0 307 273-602 73-573 (830)
100 KOG0951 RNA helicase BRR2, DEA 99.9 1.8E-23 3.8E-28 247.3 31.3 302 281-598 309-698 (1674)
101 PRK13104 secA preprotein trans 99.9 1.2E-23 2.6E-28 250.5 29.5 318 276-616 77-602 (896)
102 PRK11448 hsdR type I restricti 99.9 1.7E-23 3.6E-28 260.1 29.0 298 280-590 412-801 (1123)
103 PRK14873 primosome assembly pr 99.9 1.6E-23 3.5E-28 248.3 27.4 276 308-602 165-539 (665)
104 COG4581 Superfamily II RNA hel 99.9 2.4E-24 5.3E-29 258.9 19.7 311 273-604 111-539 (1041)
105 PLN03142 Probable chromatin-re 99.9 8.5E-22 1.8E-26 241.0 33.3 312 281-605 169-602 (1033)
106 COG1203 CRISPR-associated heli 99.9 4.4E-22 9.5E-27 240.9 23.3 313 281-604 195-552 (733)
107 TIGR00631 uvrb excinuclease AB 99.9 2.2E-20 4.7E-25 222.2 34.1 122 479-603 429-554 (655)
108 PRK13107 preprotein translocas 99.9 6.8E-21 1.5E-25 226.5 26.5 319 275-616 76-606 (908)
109 PRK12899 secA preprotein trans 99.9 9.1E-21 2E-25 225.7 27.5 124 279-416 90-226 (970)
110 COG0556 UvrB Helicase subunit 99.9 1.4E-20 3.1E-25 208.7 21.1 166 431-602 386-557 (663)
111 PRK05298 excinuclease ABC subu 99.8 5.9E-19 1.3E-23 211.1 33.0 121 479-602 433-557 (652)
112 cd00268 DEADc DEAD-box helicas 99.8 1.4E-19 3.1E-24 185.6 21.1 182 265-458 4-201 (203)
113 KOG0950 DNA polymerase theta/e 99.8 4.6E-20 9.9E-25 216.2 17.4 310 278-603 220-612 (1008)
114 KOG0385 Chromatin remodeling c 99.8 2.8E-18 6E-23 196.5 30.2 313 280-605 166-602 (971)
115 PF00270 DEAD: DEAD/DEAH box h 99.8 1.5E-19 3.3E-24 179.1 17.6 149 283-442 1-163 (169)
116 KOG0384 Chromodomain-helicase 99.8 5.8E-19 1.2E-23 210.3 24.7 356 240-607 319-816 (1373)
117 KOG0349 Putative DEAD-box RNA 99.8 8.9E-20 1.9E-24 196.9 15.3 264 329-600 284-613 (725)
118 COG1110 Reverse gyrase [DNA re 99.8 1.9E-18 4.2E-23 203.4 26.6 283 270-574 71-418 (1187)
119 TIGR00348 hsdR type I site-spe 99.8 9.9E-19 2.1E-23 209.8 24.1 296 281-589 238-634 (667)
120 PRK13103 secA preprotein trans 99.8 2.8E-18 6.2E-23 204.4 27.1 303 277-603 78-592 (913)
121 PRK12326 preprotein translocas 99.8 1.8E-17 4E-22 193.5 32.7 307 273-602 70-547 (764)
122 COG4096 HsdR Type I site-speci 99.8 1.4E-18 3E-23 202.3 20.3 291 280-590 164-526 (875)
123 PRK12900 secA preprotein trans 99.8 8.8E-18 1.9E-22 200.9 27.4 118 482-604 588-713 (1025)
124 TIGR01407 dinG_rel DnaQ family 99.8 6.4E-17 1.4E-21 199.6 32.4 316 278-601 242-813 (850)
125 KOG0387 Transcription-coupled 99.8 6.9E-17 1.5E-21 186.1 25.4 320 281-610 205-666 (923)
126 KOG1123 RNA polymerase II tran 99.7 4.2E-17 9.1E-22 179.3 16.1 335 250-616 278-667 (776)
127 PRK07246 bifunctional ATP-depe 99.7 3.6E-15 7.9E-20 182.4 31.6 310 279-598 243-780 (820)
128 KOG0390 DNA repair protein, SN 99.7 2.1E-15 4.6E-20 178.0 27.6 320 281-605 238-710 (776)
129 CHL00122 secA preprotein trans 99.7 8.5E-15 1.9E-19 174.3 27.6 268 273-561 68-491 (870)
130 smart00487 DEXDc DEAD-like hel 99.7 1.5E-15 3.2E-20 152.0 17.4 174 277-460 4-189 (201)
131 PRK12903 secA preprotein trans 99.7 7.9E-15 1.7E-19 173.7 25.1 305 274-602 71-539 (925)
132 PF04851 ResIII: Type III rest 99.6 5.4E-16 1.2E-20 155.0 10.6 154 280-442 2-183 (184)
133 COG4889 Predicted helicase [Ge 99.6 3.1E-15 6.7E-20 172.7 17.2 322 268-597 148-583 (1518)
134 KOG0389 SNF2 family DNA-depend 99.6 3.7E-14 8E-19 163.7 24.6 312 280-604 398-890 (941)
135 KOG0949 Predicted helicase, DE 99.6 6.2E-15 1.3E-19 172.4 18.4 150 280-443 510-673 (1330)
136 KOG0392 SNF2 family DNA-depend 99.6 1.6E-14 3.4E-19 172.3 21.4 321 281-619 975-1466(1549)
137 PF03461 TRCF: TRCF domain; I 99.6 1.2E-15 2.6E-20 140.2 8.6 89 685-775 1-89 (101)
138 PRK12902 secA preprotein trans 99.6 9.9E-14 2.1E-18 165.1 26.6 126 275-416 79-216 (939)
139 cd00079 HELICc Helicase superf 99.6 3.3E-15 7.2E-20 141.2 11.5 115 481-598 17-131 (131)
140 PRK08074 bifunctional ATP-depe 99.6 3.8E-13 8.2E-18 167.3 32.7 91 274-369 249-345 (928)
141 KOG0953 Mitochondrial RNA heli 99.6 8.9E-15 1.9E-19 163.4 15.1 263 305-602 193-477 (700)
142 PF00271 Helicase_C: Helicase 99.6 1.2E-14 2.6E-19 126.4 8.6 77 511-590 2-78 (78)
143 cd00046 DEXDc DEAD-like helica 99.6 5.3E-14 1.2E-18 132.5 13.6 131 305-441 2-144 (144)
144 TIGR03117 cas_csf4 CRISPR-asso 99.5 7.7E-12 1.7E-16 147.7 32.5 115 481-600 458-615 (636)
145 KOG1000 Chromatin remodeling p 99.5 2.3E-12 5E-17 142.5 22.1 316 281-617 198-618 (689)
146 KOG0386 Chromatin remodeling c 99.5 8.5E-13 1.8E-17 155.8 16.4 309 281-602 394-838 (1157)
147 PRK11747 dinG ATP-dependent DN 99.4 9.6E-11 2.1E-15 141.8 34.1 71 279-349 23-96 (697)
148 KOG4150 Predicted ATP-dependen 99.4 5.7E-13 1.2E-17 148.5 13.2 307 281-600 286-638 (1034)
149 PRK12901 secA preprotein trans 99.4 3.4E-11 7.4E-16 145.0 27.0 132 480-616 616-756 (1112)
150 smart00490 HELICc helicase sup 99.4 7E-13 1.5E-17 114.7 9.4 81 507-590 2-82 (82)
151 TIGR02562 cas3_yersinia CRISPR 99.4 5.6E-11 1.2E-15 143.8 28.2 316 271-591 398-881 (1110)
152 KOG0951 RNA helicase BRR2, DEA 99.4 7.4E-12 1.6E-16 150.1 18.8 296 282-602 1144-1494(1674)
153 PF02559 CarD_CdnL_TRCF: CarD- 99.3 2.6E-12 5.6E-17 117.5 8.0 97 153-255 1-98 (98)
154 COG1199 DinG Rad3-related DNA 99.3 3.9E-10 8.4E-15 136.3 24.8 73 278-353 12-85 (654)
155 TIGR00604 rad3 DNA repair heli 99.3 2.2E-09 4.7E-14 130.8 29.5 75 276-353 4-82 (705)
156 KOG4439 RNA polymerase II tran 99.2 4E-10 8.7E-15 129.3 20.9 157 279-445 323-505 (901)
157 KOG0921 Dosage compensation co 99.2 6E-12 1.3E-16 146.6 6.0 368 304-698 394-864 (1282)
158 PF00176 SNF2_N: SNF2 family N 99.2 9.4E-11 2E-15 126.8 13.9 155 285-446 1-177 (299)
159 KOG0388 SNF2 family DNA-depend 99.2 8.5E-10 1.8E-14 126.2 18.9 112 490-604 1042-1156(1185)
160 KOG1002 Nucleotide excision re 99.1 1.1E-09 2.3E-14 121.5 17.4 109 493-604 639-751 (791)
161 PF02399 Herpes_ori_bp: Origin 99.1 8.3E-09 1.8E-13 122.6 23.9 276 304-600 50-386 (824)
162 COG0553 HepA Superfamily II DN 99.1 7.1E-09 1.5E-13 128.7 23.0 316 279-604 336-824 (866)
163 PF07652 Flavi_DEAD: Flaviviru 99.0 1.1E-09 2.3E-14 105.9 10.6 127 303-445 4-140 (148)
164 COG0653 SecA Preprotein transl 99.0 2.1E-08 4.6E-13 119.9 21.0 123 277-415 76-210 (822)
165 KOG1015 Transcription regulato 98.9 1.1E-07 2.4E-12 112.1 23.5 114 490-604 1140-1279(1567)
166 smart00488 DEXDc2 DEAD-like he 98.9 1.1E-08 2.4E-13 111.5 14.1 74 277-353 4-83 (289)
167 smart00489 DEXDc3 DEAD-like he 98.9 1.1E-08 2.4E-13 111.5 14.1 74 277-353 4-83 (289)
168 COG0610 Type I site-specific r 98.9 4.1E-08 8.9E-13 122.4 19.4 134 302-444 272-416 (962)
169 PF07517 SecA_DEAD: SecA DEAD- 98.5 1.4E-06 3.1E-11 93.5 14.3 130 272-417 68-209 (266)
170 PRK15483 type III restriction- 98.4 4.5E-06 9.8E-11 102.3 16.2 164 279-443 4-240 (986)
171 KOG0391 SNF2 family DNA-depend 98.2 5.3E-06 1.2E-10 100.0 10.7 156 281-446 615-780 (1958)
172 PF06862 DUF1253: Protein of u 98.2 0.00022 4.8E-09 81.5 23.4 214 386-602 131-415 (442)
173 PF13086 AAA_11: AAA domain; P 98.2 6.1E-06 1.3E-10 85.5 9.6 65 282-353 2-75 (236)
174 PF13604 AAA_30: AAA domain; P 98.2 1.5E-05 3.3E-10 82.1 11.6 125 281-437 1-127 (196)
175 KOG0391 SNF2 family DNA-depend 98.0 3.7E-05 8.1E-10 93.0 11.5 117 486-605 1270-1390(1958)
176 PF02562 PhoH: PhoH-like prote 97.9 3.1E-05 6.7E-10 80.2 7.9 135 281-437 4-152 (205)
177 KOG1803 DNA helicase [Replicat 97.8 0.00013 2.7E-09 84.5 11.3 73 274-352 178-250 (649)
178 TIGR00376 DNA helicase, putati 97.8 0.00025 5.4E-09 85.6 13.9 68 280-353 156-223 (637)
179 PF09848 DUF2075: Uncharacteri 97.7 8.3E-05 1.8E-09 83.6 8.7 50 305-354 3-54 (352)
180 KOG0952 DNA/RNA helicase MER3/ 97.6 0.00013 2.7E-09 88.5 8.7 125 282-420 928-1061(1230)
181 TIGR01448 recD_rel helicase, p 97.6 0.0009 1.9E-08 82.0 16.3 134 270-437 312-449 (720)
182 PRK10536 hypothetical protein; 97.6 0.0029 6.3E-08 67.7 16.6 137 279-436 57-208 (262)
183 PF13872 AAA_34: P-loop contai 97.5 0.00062 1.3E-08 73.9 10.8 154 281-444 37-223 (303)
184 PF12340 DUF3638: Protein of u 97.5 0.00075 1.6E-08 70.8 10.7 118 274-398 16-142 (229)
185 PF13401 AAA_22: AAA domain; P 97.4 0.001 2.2E-08 63.0 10.1 114 303-441 4-125 (131)
186 TIGR01447 recD exodeoxyribonuc 97.4 0.0039 8.5E-08 74.6 17.0 129 283-437 147-292 (586)
187 PF13245 AAA_19: Part of AAA d 97.4 0.00042 9.1E-09 60.5 6.5 47 305-351 12-62 (76)
188 PRK10875 recD exonuclease V su 97.3 0.0058 1.3E-07 73.4 17.7 143 270-438 139-299 (615)
189 PF13307 Helicase_C_2: Helicas 97.3 0.00033 7.2E-09 70.3 5.8 109 491-604 8-151 (167)
190 KOG1802 RNA helicase nonsense 97.2 0.0017 3.6E-08 75.8 10.8 84 272-367 401-485 (935)
191 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0084 1.8E-07 73.9 17.5 123 278-438 349-474 (744)
192 PRK04296 thymidine kinase; Pro 97.2 0.00074 1.6E-08 69.3 6.7 36 304-339 3-38 (190)
193 PF00580 UvrD-helicase: UvrD/R 97.1 0.00095 2.1E-08 72.5 7.2 67 282-357 1-71 (315)
194 TIGR01073 pcrA ATP-dependent D 97.1 0.022 4.9E-07 70.2 19.8 79 281-368 4-87 (726)
195 TIGR02760 TraI_TIGR conjugativ 97.1 0.024 5.3E-07 76.4 21.0 235 279-544 427-686 (1960)
196 TIGR03015 pepcterm_ATPase puta 97.1 0.007 1.5E-07 64.9 13.2 43 279-323 21-63 (269)
197 KOG0344 ATP-dependent RNA heli 97.0 0.0028 6E-08 73.4 9.7 114 304-422 358-473 (593)
198 PF05970 PIF1: PIF1-like helic 97.0 0.0024 5.3E-08 72.1 9.0 66 281-347 1-66 (364)
199 PF00448 SRP54: SRP54-type pro 96.9 0.015 3.3E-07 60.0 13.7 124 304-450 2-134 (196)
200 cd00009 AAA The AAA+ (ATPases 96.9 0.0086 1.9E-07 56.4 11.0 54 286-340 3-56 (151)
201 PRK12723 flagellar biosynthesi 96.9 0.013 2.8E-07 66.7 14.0 122 302-451 173-307 (388)
202 PRK13889 conjugal transfer rel 96.9 0.021 4.5E-07 71.9 16.5 123 278-438 343-468 (988)
203 PF05496 RuvB_N: Holliday junc 96.8 0.0027 5.9E-08 66.4 6.9 84 404-487 100-190 (233)
204 PRK13826 Dtr system oriT relax 96.8 0.034 7.4E-07 70.5 17.5 123 278-438 378-503 (1102)
205 COG3587 Restriction endonuclea 96.8 0.0099 2.2E-07 71.5 12.1 135 303-442 74-243 (985)
206 PRK08181 transposase; Validate 96.8 0.029 6.3E-07 60.8 14.8 78 266-347 72-149 (269)
207 PRK06526 transposase; Provisio 96.7 0.0087 1.9E-07 64.3 10.6 37 302-338 97-133 (254)
208 COG1200 RecG RecG-like helicas 96.7 0.0081 1.8E-07 71.2 10.9 115 324-442 466-592 (677)
209 PRK14873 primosome assembly pr 96.7 0.0086 1.9E-07 72.6 11.4 93 478-571 174-266 (665)
210 KOG1132 Helicase of the DEAD s 96.7 0.01 2.2E-07 71.7 11.2 49 274-325 14-62 (945)
211 COG2256 MGS1 ATPase related to 96.6 0.022 4.7E-07 63.9 12.7 35 407-441 106-140 (436)
212 TIGR00643 recG ATP-dependent D 96.6 0.026 5.7E-07 68.5 14.7 116 322-441 439-566 (630)
213 PRK07952 DNA replication prote 96.6 0.052 1.1E-06 58.1 15.2 56 282-337 77-133 (244)
214 smart00382 AAA ATPases associa 96.6 0.0046 1E-07 57.5 6.5 41 303-343 2-42 (148)
215 TIGR00580 mfd transcription-re 96.6 0.011 2.4E-07 74.1 11.3 95 324-422 653-747 (926)
216 PRK14974 cell division protein 96.6 0.1 2.2E-06 58.4 17.7 125 302-449 139-272 (336)
217 PRK10689 transcription-repair 96.5 0.01 2.2E-07 76.1 10.8 95 323-421 801-895 (1147)
218 KOG1805 DNA replication helica 96.5 0.014 3.1E-07 71.1 10.9 124 281-417 669-808 (1100)
219 PRK14962 DNA polymerase III su 96.5 0.056 1.2E-06 63.3 15.6 39 286-324 19-57 (472)
220 PRK08084 DNA replication initi 96.4 0.022 4.8E-07 60.4 11.2 52 286-338 29-80 (235)
221 PRK11889 flhF flagellar biosyn 96.4 0.058 1.3E-06 61.2 14.8 36 303-338 241-276 (436)
222 COG1197 Mfd Transcription-repa 96.4 0.013 2.8E-07 73.2 10.6 98 327-428 799-896 (1139)
223 PRK10917 ATP-dependent DNA hel 96.4 0.012 2.7E-07 71.8 10.0 96 487-582 305-403 (681)
224 PRK06645 DNA polymerase III su 96.4 0.079 1.7E-06 62.4 16.0 41 285-325 25-65 (507)
225 PRK05703 flhF flagellar biosyn 96.3 0.17 3.7E-06 58.5 18.3 123 303-453 221-354 (424)
226 PRK14956 DNA polymerase III su 96.3 0.042 9.2E-07 63.9 13.3 41 285-325 22-62 (484)
227 PRK05580 primosome assembly pr 96.2 0.022 4.7E-07 69.7 11.0 89 483-573 181-269 (679)
228 TIGR00595 priA primosomal prot 96.2 0.019 4.2E-07 67.7 10.2 90 481-572 14-103 (505)
229 TIGR00064 ftsY signal recognit 96.2 0.093 2E-06 57.0 14.7 51 303-353 72-124 (272)
230 PRK11054 helD DNA helicase IV; 96.1 0.016 3.5E-07 70.6 9.1 88 272-369 187-278 (684)
231 COG1198 PriA Primosomal protei 96.1 0.03 6.5E-07 68.1 10.8 88 479-568 232-319 (730)
232 PRK14964 DNA polymerase III su 96.1 0.13 2.7E-06 60.5 15.6 40 286-325 18-57 (491)
233 KOG1001 Helicase-like transcri 96.0 0.052 1.1E-06 65.8 12.3 135 303-448 152-299 (674)
234 PRK08691 DNA polymerase III su 96.0 0.05 1.1E-06 65.7 12.0 40 286-325 21-60 (709)
235 PRK07994 DNA polymerase III su 96.0 0.12 2.6E-06 62.5 15.2 39 286-324 21-59 (647)
236 TIGR00631 uvrb excinuclease AB 96.0 0.035 7.6E-07 67.4 10.8 87 327-419 438-524 (655)
237 PRK13342 recombination factor 95.9 0.042 9.1E-07 63.3 10.9 37 405-441 92-128 (413)
238 KOG2340 Uncharacterized conser 95.9 0.065 1.4E-06 61.7 11.7 108 493-603 553-669 (698)
239 PHA03333 putative ATPase subun 95.9 0.2 4.2E-06 60.2 16.2 171 275-452 163-343 (752)
240 PRK09111 DNA polymerase III su 95.9 0.17 3.6E-06 61.0 15.9 41 286-326 29-69 (598)
241 PRK14960 DNA polymerase III su 95.8 0.19 4E-06 60.6 15.8 40 286-325 20-59 (702)
242 PRK00771 signal recognition pa 95.8 0.13 2.8E-06 59.6 14.2 37 302-338 94-130 (437)
243 PRK07003 DNA polymerase III su 95.8 0.18 4E-06 61.4 15.7 40 286-325 21-60 (830)
244 PRK14949 DNA polymerase III su 95.8 0.14 3.1E-06 63.3 15.0 39 286-324 21-59 (944)
245 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.074 1.6E-06 55.4 11.2 51 285-336 21-71 (226)
246 PRK14958 DNA polymerase III su 95.8 0.082 1.8E-06 62.5 12.7 40 286-325 21-60 (509)
247 PRK08903 DnaA regulatory inact 95.8 0.15 3.2E-06 53.5 13.3 37 302-338 41-77 (227)
248 PRK10919 ATP-dependent DNA hel 95.7 0.016 3.5E-07 70.7 6.6 79 281-368 2-86 (672)
249 PRK14712 conjugal transfer nic 95.7 0.065 1.4E-06 70.1 12.1 136 272-440 826-967 (1623)
250 COG1435 Tdk Thymidine kinase [ 95.7 0.036 7.9E-07 56.7 7.9 100 304-431 5-108 (201)
251 PRK08727 hypothetical protein; 95.7 0.085 1.8E-06 55.9 11.2 36 303-338 41-76 (233)
252 PRK14963 DNA polymerase III su 95.6 0.27 5.8E-06 58.1 16.1 39 286-324 19-57 (504)
253 PRK13341 recombination factor 95.6 0.082 1.8E-06 64.9 12.1 38 404-441 108-145 (725)
254 KOG2028 ATPase related to the 95.5 0.023 5E-07 62.7 6.3 44 404-447 221-264 (554)
255 PRK07764 DNA polymerase III su 95.5 0.29 6.2E-06 61.0 16.5 41 286-326 20-60 (824)
256 PRK14957 DNA polymerase III su 95.5 0.26 5.6E-06 58.6 15.4 41 285-325 20-60 (546)
257 PRK14961 DNA polymerase III su 95.5 0.32 6.9E-06 55.1 15.5 40 285-324 20-59 (363)
258 COG1875 NYN ribonuclease and A 95.5 0.04 8.7E-07 61.1 7.8 60 278-342 224-287 (436)
259 PRK14952 DNA polymerase III su 95.5 0.3 6.6E-06 58.6 15.9 40 286-325 18-57 (584)
260 PF00265 TK: Thymidine kinase; 95.5 0.065 1.4E-06 54.5 8.9 36 306-341 4-39 (176)
261 PRK14955 DNA polymerase III su 95.4 0.1 2.2E-06 59.8 11.5 42 285-326 20-61 (397)
262 TIGR00635 ruvB Holliday juncti 95.4 0.17 3.8E-06 55.4 12.9 21 302-322 29-49 (305)
263 PRK09112 DNA polymerase III su 95.4 0.05 1.1E-06 61.3 8.6 44 285-328 27-70 (351)
264 PRK14722 flhF flagellar biosyn 95.4 0.16 3.5E-06 57.5 12.6 120 302-449 136-265 (374)
265 COG3267 ExeA Type II secretory 95.4 0.14 3.1E-06 54.5 11.2 54 285-341 35-88 (269)
266 cd01120 RecA-like_NTPases RecA 95.3 0.082 1.8E-06 51.2 9.0 38 306-343 2-39 (165)
267 TIGR02760 TraI_TIGR conjugativ 95.3 0.16 3.5E-06 68.8 14.4 124 279-437 1017-1146(1960)
268 PRK07133 DNA polymerase III su 95.3 0.35 7.6E-06 59.1 15.9 39 286-324 23-61 (725)
269 PRK05563 DNA polymerase III su 95.3 0.33 7.2E-06 58.1 15.6 39 286-324 21-59 (559)
270 PRK06893 DNA replication initi 95.3 0.15 3.3E-06 53.8 11.4 34 305-338 41-74 (229)
271 PTZ00293 thymidine kinase; Pro 95.3 0.082 1.8E-06 55.2 9.0 39 303-341 4-42 (211)
272 cd01124 KaiC KaiC is a circadi 95.2 0.064 1.4E-06 54.0 8.1 47 306-353 2-48 (187)
273 COG1419 FlhF Flagellar GTP-bin 95.2 0.33 7.1E-06 55.1 14.3 125 303-455 203-337 (407)
274 PRK12724 flagellar biosynthesi 95.2 0.6 1.3E-05 53.7 16.4 51 303-353 223-276 (432)
275 PRK14951 DNA polymerase III su 95.2 0.48 1E-05 57.2 16.4 40 286-325 21-60 (618)
276 TIGR02881 spore_V_K stage V sp 95.2 0.26 5.7E-06 53.0 13.1 21 303-323 42-62 (261)
277 TIGR01074 rep ATP-dependent DN 95.2 0.036 7.9E-07 67.6 7.1 80 281-369 1-86 (664)
278 PRK13709 conjugal transfer nic 95.2 0.13 2.8E-06 68.3 12.3 135 273-440 959-1099(1747)
279 PRK12323 DNA polymerase III su 95.2 0.14 3.1E-06 61.4 11.6 42 286-327 21-62 (700)
280 COG4098 comFA Superfamily II D 95.1 0.096 2.1E-06 57.6 9.3 90 323-418 297-386 (441)
281 PRK12726 flagellar biosynthesi 95.1 0.6 1.3E-05 53.0 15.8 37 302-338 205-241 (407)
282 PTZ00112 origin recognition co 95.1 0.23 4.9E-06 61.2 13.1 40 283-322 760-800 (1164)
283 PRK00411 cdc6 cell division co 95.1 0.3 6.6E-06 55.5 13.9 42 283-324 35-76 (394)
284 PRK00149 dnaA chromosomal repl 95.1 0.15 3.3E-06 59.3 11.6 42 304-346 149-192 (450)
285 PF13177 DNA_pol3_delta2: DNA 95.0 0.29 6.4E-06 48.9 11.9 43 286-328 2-44 (162)
286 PRK10416 signal recognition pa 95.0 0.29 6.2E-06 54.5 12.8 52 302-353 113-166 (318)
287 PRK05896 DNA polymerase III su 95.0 0.23 5E-06 59.4 12.7 43 285-327 20-62 (605)
288 TIGR02397 dnaX_nterm DNA polym 95.0 0.5 1.1E-05 52.8 15.0 40 285-324 18-57 (355)
289 PRK14950 DNA polymerase III su 94.9 0.22 4.8E-06 60.0 12.8 40 285-324 20-59 (585)
290 COG1474 CDC6 Cdc6-related prot 94.9 0.8 1.7E-05 52.0 16.5 44 281-324 20-63 (366)
291 PRK11773 uvrD DNA-dependent he 94.9 0.046 9.9E-07 67.4 7.1 79 281-368 9-92 (721)
292 TIGR01075 uvrD DNA helicase II 94.9 0.044 9.6E-07 67.5 7.0 79 281-368 4-87 (715)
293 COG2805 PilT Tfp pilus assembl 94.9 0.15 3.2E-06 55.5 9.9 39 290-330 113-151 (353)
294 PRK14969 DNA polymerase III su 94.9 0.23 5E-06 59.0 12.7 39 286-324 21-59 (527)
295 PRK14953 DNA polymerase III su 94.9 0.67 1.4E-05 54.6 16.3 40 285-324 20-59 (486)
296 PRK12727 flagellar biosynthesi 94.9 0.47 1E-05 55.9 14.6 118 302-447 349-475 (559)
297 COG0552 FtsY Signal recognitio 94.8 0.28 6E-06 54.2 11.9 55 301-355 137-193 (340)
298 COG1484 DnaC DNA replication p 94.8 0.22 4.7E-06 53.6 11.1 69 283-352 85-153 (254)
299 TIGR00362 DnaA chromosomal rep 94.8 0.19 4E-06 57.7 11.2 35 304-338 137-173 (405)
300 PF05127 Helicase_RecD: Helica 94.8 0.019 4.2E-07 58.3 2.7 122 307-441 1-123 (177)
301 PRK05298 excinuclease ABC subu 94.7 0.18 3.9E-06 61.5 11.4 86 328-419 443-528 (652)
302 PRK08769 DNA polymerase III su 94.7 0.29 6.4E-06 54.4 12.1 48 281-328 4-51 (319)
303 PF05876 Terminase_GpA: Phage 94.7 0.035 7.5E-07 66.3 5.0 126 281-417 16-146 (557)
304 PLN03025 replication factor C 94.7 0.25 5.3E-06 54.9 11.4 26 301-326 32-57 (319)
305 PRK14965 DNA polymerase III su 94.6 0.27 5.9E-06 59.1 12.4 39 286-324 21-59 (576)
306 PRK14954 DNA polymerase III su 94.6 0.18 3.9E-06 60.9 10.9 42 285-326 20-61 (620)
307 PRK12402 replication factor C 94.6 0.79 1.7E-05 50.7 15.4 39 286-325 20-58 (337)
308 TIGR02928 orc1/cdc6 family rep 94.6 0.28 6.1E-06 55.1 11.9 38 283-320 20-57 (365)
309 TIGR00596 rad1 DNA repair prot 94.6 0.14 2.9E-06 63.6 9.9 52 549-604 431-516 (814)
310 PRK06647 DNA polymerase III su 94.6 0.67 1.4E-05 55.6 15.5 40 286-325 21-60 (563)
311 PRK14948 DNA polymerase III su 94.6 0.97 2.1E-05 54.8 16.9 42 285-326 20-61 (620)
312 smart00492 HELICc3 helicase su 94.5 0.27 6E-06 48.1 10.0 46 527-572 30-78 (141)
313 PRK14959 DNA polymerase III su 94.4 0.51 1.1E-05 56.8 13.8 41 286-326 21-61 (624)
314 PRK05642 DNA replication initi 94.4 0.42 9.1E-06 50.7 12.0 35 304-338 46-80 (234)
315 COG0556 UvrB Helicase subunit 94.4 0.19 4.1E-06 58.2 9.6 88 326-419 441-528 (663)
316 PRK04537 ATP-dependent RNA hel 94.4 0.18 4E-06 60.5 10.2 79 329-413 255-333 (572)
317 COG1329 Transcriptional regula 94.3 0.073 1.6E-06 52.7 5.4 51 152-204 3-55 (166)
318 TIGR03499 FlhF flagellar biosy 94.3 0.25 5.3E-06 54.0 10.2 37 302-338 193-231 (282)
319 PRK05707 DNA polymerase III su 94.3 0.42 9.2E-06 53.4 12.2 43 282-327 4-46 (328)
320 TIGR00959 ffh signal recogniti 94.3 0.23 4.9E-06 57.4 10.3 51 303-353 99-152 (428)
321 TIGR01425 SRP54_euk signal rec 94.3 0.79 1.7E-05 53.0 14.5 51 303-353 100-152 (429)
322 smart00491 HELICc2 helicase su 94.2 0.24 5.2E-06 48.6 8.8 41 532-572 32-79 (142)
323 PRK14971 DNA polymerase III su 94.1 0.36 7.7E-06 58.5 11.8 39 286-324 22-60 (614)
324 TIGR02880 cbbX_cfxQ probable R 94.1 0.64 1.4E-05 50.9 12.9 21 303-323 58-78 (284)
325 cd00561 CobA_CobO_BtuR ATP:cor 94.1 0.36 7.8E-06 48.3 9.9 33 306-338 5-37 (159)
326 PTZ00110 helicase; Provisional 94.1 0.24 5.2E-06 59.2 10.3 85 321-411 366-451 (545)
327 PRK06731 flhF flagellar biosyn 94.1 1.5 3.2E-05 47.8 15.4 121 303-449 75-204 (270)
328 PRK00080 ruvB Holliday junctio 94.0 0.45 9.7E-06 53.0 11.8 23 301-323 49-71 (328)
329 PRK07471 DNA polymerase III su 94.0 0.86 1.9E-05 51.7 14.1 44 285-328 23-66 (365)
330 PRK08451 DNA polymerase III su 94.0 1.2 2.7E-05 52.8 15.7 40 286-325 19-58 (535)
331 PRK13767 ATP-dependent helicas 94.0 0.26 5.6E-06 62.2 10.8 89 324-413 277-366 (876)
332 PF00308 Bac_DnaA: Bacterial d 93.9 0.52 1.1E-05 49.6 11.3 34 304-338 35-71 (219)
333 PRK04837 ATP-dependent RNA hel 93.9 0.17 3.7E-06 58.3 8.4 78 330-413 254-331 (423)
334 TIGR00614 recQ_fam ATP-depende 93.8 0.31 6.6E-06 57.1 10.5 78 329-412 224-301 (470)
335 PRK06871 DNA polymerase III su 93.8 0.71 1.5E-05 51.5 12.8 47 282-328 3-49 (325)
336 PRK12377 putative replication 93.8 0.93 2E-05 48.7 13.2 64 283-349 80-146 (248)
337 PRK10590 ATP-dependent RNA hel 93.7 0.3 6.5E-06 56.9 10.1 75 331-411 245-319 (456)
338 PRK12422 chromosomal replicati 93.7 0.86 1.9E-05 53.1 13.6 36 304-339 142-177 (445)
339 PHA02544 44 clamp loader, smal 93.6 0.46 9.9E-06 52.3 10.8 19 303-321 43-61 (316)
340 KOG0298 DEAD box-containing he 93.6 0.15 3.2E-06 64.1 7.4 135 301-444 372-553 (1394)
341 PRK10867 signal recognition pa 93.6 0.38 8.3E-06 55.7 10.4 50 303-352 100-152 (433)
342 KOG0383 Predicted helicase [Ge 93.5 0.041 9E-07 66.2 2.6 156 280-442 294-475 (696)
343 COG3421 Uncharacterized protei 93.5 0.037 8E-07 64.5 1.9 100 308-418 2-125 (812)
344 PRK11192 ATP-dependent RNA hel 93.5 0.33 7.2E-06 56.1 9.9 76 330-411 244-319 (434)
345 cd01122 GP4d_helicase GP4d_hel 93.5 0.37 8.1E-06 51.8 9.6 52 301-353 28-80 (271)
346 PRK14088 dnaA chromosomal repl 93.4 1.1 2.3E-05 52.3 13.8 57 283-339 110-168 (440)
347 CHL00181 cbbX CbbX; Provisiona 93.4 0.9 1.9E-05 49.8 12.5 22 303-324 59-80 (287)
348 PRK07940 DNA polymerase III su 93.4 0.59 1.3E-05 53.6 11.3 24 303-326 36-59 (394)
349 cd00079 HELICc Helicase superf 93.3 0.66 1.4E-05 43.2 9.9 80 330-415 27-106 (131)
350 PRK14970 DNA polymerase III su 93.3 0.72 1.6E-05 52.1 12.0 39 285-323 21-59 (367)
351 TIGR03878 thermo_KaiC_2 KaiC d 93.3 0.18 4E-06 54.3 6.8 38 301-338 34-71 (259)
352 COG1444 Predicted P-loop ATPas 93.2 0.67 1.4E-05 56.6 12.0 145 281-442 211-357 (758)
353 PHA02533 17 large terminase pr 93.2 0.88 1.9E-05 54.2 12.9 75 278-359 56-132 (534)
354 KOG0349 Putative DEAD-box RNA 93.1 0.021 4.6E-07 63.8 -0.7 43 279-328 22-64 (725)
355 PRK08116 hypothetical protein; 93.1 0.99 2.1E-05 49.0 12.0 68 281-349 88-159 (268)
356 PRK07993 DNA polymerase III su 93.0 0.93 2E-05 50.8 12.1 46 282-327 3-48 (334)
357 KOG0331 ATP-dependent RNA heli 93.0 0.33 7.1E-06 56.8 8.7 85 321-411 329-415 (519)
358 PRK09183 transposase/IS protei 93.0 0.58 1.3E-05 50.5 10.1 76 265-345 68-143 (259)
359 TIGR00678 holB DNA polymerase 93.0 0.94 2E-05 46.0 11.2 27 301-327 12-38 (188)
360 TIGR03345 VI_ClpV1 type VI sec 93.0 0.45 9.7E-06 59.8 10.4 40 284-323 569-616 (852)
361 PRK10865 protein disaggregatio 93.0 0.27 5.8E-06 61.9 8.5 40 285-324 572-619 (857)
362 PRK13833 conjugal transfer pro 92.9 0.21 4.5E-06 55.6 6.7 64 272-344 121-187 (323)
363 KOG1016 Predicted DNA helicase 92.9 0.26 5.6E-06 59.0 7.6 111 492-603 719-850 (1387)
364 PRK14087 dnaA chromosomal repl 92.9 1.3 2.9E-05 51.6 13.6 46 304-351 142-190 (450)
365 COG0513 SrmB Superfamily II DN 92.9 0.46 9.9E-06 56.4 9.9 74 331-410 273-346 (513)
366 TIGR02782 TrbB_P P-type conjug 92.8 0.28 6.1E-06 54.1 7.4 64 272-344 109-175 (299)
367 PRK08058 DNA polymerase III su 92.7 1 2.2E-05 50.3 12.0 42 285-326 10-51 (329)
368 PRK05986 cob(I)alamin adenolsy 92.7 0.47 1E-05 48.8 8.4 38 304-341 23-60 (191)
369 COG1221 PspF Transcriptional r 92.7 0.58 1.3E-05 53.4 9.9 120 287-441 88-222 (403)
370 PRK05564 DNA polymerase III su 92.6 1.2 2.7E-05 49.1 12.4 40 286-325 9-48 (313)
371 TIGR02785 addA_Gpos recombinat 92.6 0.25 5.4E-06 64.6 7.8 67 282-357 2-71 (1232)
372 TIGR01547 phage_term_2 phage t 92.6 0.42 9E-06 54.6 8.8 130 306-443 4-142 (396)
373 PRK07399 DNA polymerase III su 92.6 1.1 2.4E-05 49.8 11.8 44 285-328 8-51 (314)
374 PF13871 Helicase_C_4: Helicas 92.5 0.31 6.8E-06 52.9 7.2 66 535-601 52-126 (278)
375 PTZ00424 helicase 45; Provisio 92.5 0.39 8.4E-06 54.6 8.4 76 331-412 267-342 (401)
376 PLN00206 DEAD-box ATP-dependen 92.4 0.56 1.2E-05 55.7 9.9 76 331-411 367-442 (518)
377 TIGR03877 thermo_KaiC_1 KaiC d 92.4 0.22 4.8E-06 52.8 5.8 52 301-353 19-70 (237)
378 PRK11776 ATP-dependent RNA hel 92.4 0.41 8.8E-06 55.8 8.5 78 330-413 241-318 (460)
379 PRK01297 ATP-dependent RNA hel 92.4 0.61 1.3E-05 54.7 10.0 76 331-412 335-410 (475)
380 TIGR02639 ClpA ATP-dependent C 92.4 0.8 1.7E-05 56.7 11.5 40 286-326 187-226 (731)
381 PRK11034 clpA ATP-dependent Cl 92.4 0.33 7.1E-06 60.0 8.0 38 285-322 462-507 (758)
382 COG2255 RuvB Holliday junction 92.3 0.77 1.7E-05 49.8 9.7 23 301-323 50-72 (332)
383 PF01695 IstB_IS21: IstB-like 92.3 0.27 5.8E-06 50.0 6.1 45 301-346 45-89 (178)
384 PRK06921 hypothetical protein; 92.3 1.8 3.8E-05 47.0 12.7 46 302-348 116-162 (266)
385 COG0470 HolB ATPase involved i 92.3 0.73 1.6E-05 50.5 10.1 24 305-328 26-49 (325)
386 PF01443 Viral_helicase1: Vira 92.3 0.19 4E-06 52.5 5.1 34 404-437 61-94 (234)
387 PRK06090 DNA polymerase III su 92.3 1.9 4.1E-05 48.1 13.1 47 281-327 3-49 (319)
388 COG3973 Superfamily I DNA and 92.3 0.32 6.9E-06 57.2 7.2 53 301-353 224-282 (747)
389 KOG1513 Nuclear helicase MOP-3 92.3 0.084 1.8E-06 63.1 2.6 155 281-441 264-454 (1300)
390 PRK06305 DNA polymerase III su 92.2 0.98 2.1E-05 52.7 11.4 42 286-327 22-63 (451)
391 PF00004 AAA: ATPase family as 92.2 0.9 2E-05 42.4 9.2 17 306-322 1-17 (132)
392 PRK06995 flhF flagellar biosyn 92.2 3 6.5E-05 49.0 15.1 51 303-353 256-310 (484)
393 KOG0989 Replication factor C, 92.1 0.28 6.1E-06 53.5 6.2 42 284-326 39-80 (346)
394 PRK11057 ATP-dependent DNA hel 92.1 0.43 9.3E-06 57.8 8.5 77 329-411 234-310 (607)
395 KOG1133 Helicase of the DEAD s 92.1 0.23 5E-06 59.0 5.9 48 278-328 12-59 (821)
396 PF06745 KaiC: KaiC; InterPro 92.1 0.19 4.2E-06 52.6 4.9 52 301-353 17-69 (226)
397 PRK13894 conjugal transfer ATP 92.0 0.27 5.8E-06 54.7 6.1 63 272-343 125-190 (319)
398 PRK11634 ATP-dependent RNA hel 92.0 0.42 9.1E-06 58.1 8.3 76 330-411 244-319 (629)
399 PRK00440 rfc replication facto 92.0 1.3 2.9E-05 48.5 11.6 37 286-323 22-58 (319)
400 TIGR02237 recomb_radB DNA repa 91.9 0.62 1.3E-05 48.0 8.4 40 301-340 10-49 (209)
401 cd03115 SRP The signal recogni 91.9 1.1 2.3E-05 44.9 9.9 33 306-338 3-35 (173)
402 COG1110 Reverse gyrase [DNA re 91.8 0.25 5.4E-06 61.1 5.9 82 490-572 123-213 (1187)
403 KOG0333 U5 snRNP-like RNA heli 91.7 0.59 1.3E-05 54.1 8.4 74 331-410 517-590 (673)
404 cd01393 recA_like RecA is a b 91.7 0.7 1.5E-05 48.1 8.7 40 301-340 17-62 (226)
405 PHA02558 uvsW UvsW helicase; P 91.7 0.65 1.4E-05 54.9 9.3 79 329-412 342-420 (501)
406 PF05621 TniB: Bacterial TniB 91.7 0.95 2.1E-05 49.7 9.7 54 302-355 60-120 (302)
407 PRK13900 type IV secretion sys 91.6 0.27 5.9E-06 55.0 5.7 41 303-344 160-200 (332)
408 COG4626 Phage terminase-like p 91.6 1.9 4.2E-05 50.7 12.6 80 276-356 56-143 (546)
409 TIGR02640 gas_vesic_GvpN gas v 91.4 0.45 9.7E-06 51.3 6.9 52 280-337 1-52 (262)
410 COG4962 CpaF Flp pilus assembl 91.4 0.24 5.1E-06 55.0 4.7 59 281-346 157-215 (355)
411 TIGR02639 ClpA ATP-dependent C 91.4 0.55 1.2E-05 58.2 8.5 39 285-323 458-504 (731)
412 cd00983 recA RecA is a bacter 91.3 0.54 1.2E-05 52.4 7.5 58 288-346 41-98 (325)
413 PRK10436 hypothetical protein; 91.3 1.2 2.6E-05 52.1 10.6 51 282-338 202-253 (462)
414 COG2804 PulE Type II secretory 91.2 0.35 7.5E-06 56.2 6.1 43 282-330 242-284 (500)
415 COG0542 clpA ATP-binding subun 91.2 1.3 2.7E-05 54.6 11.0 103 285-417 495-605 (786)
416 CHL00176 ftsH cell division pr 91.1 3.2 6.8E-05 50.6 14.4 19 302-320 215-233 (638)
417 TIGR03817 DECH_helic helicase/ 91.1 0.8 1.7E-05 56.8 9.5 87 327-414 267-356 (742)
418 PHA02244 ATPase-like protein 91.0 2.5 5.5E-05 47.9 12.5 37 283-322 102-138 (383)
419 PRK14723 flhF flagellar biosyn 91.0 2.2 4.9E-05 52.5 13.0 36 303-338 185-222 (767)
420 PF02456 Adeno_IVa2: Adenoviru 91.0 0.32 7E-06 53.0 5.1 39 303-342 87-128 (369)
421 TIGR02012 tigrfam_recA protein 90.9 0.93 2E-05 50.5 8.9 58 288-346 41-98 (321)
422 PHA03368 DNA packaging termina 90.8 2.2 4.8E-05 51.4 12.2 159 304-476 255-419 (738)
423 PRK13851 type IV secretion sys 90.8 0.2 4.3E-06 56.3 3.5 41 303-344 162-202 (344)
424 PRK06964 DNA polymerase III su 90.6 2 4.2E-05 48.4 11.2 43 283-327 3-45 (342)
425 PRK09694 helicase Cas3; Provis 90.6 1.5 3.2E-05 55.2 11.2 91 320-414 549-647 (878)
426 TIGR01389 recQ ATP-dependent D 90.6 0.74 1.6E-05 55.5 8.5 75 331-411 224-298 (591)
427 TIGR01587 cas3_core CRISPR-ass 90.6 1.7 3.6E-05 48.7 10.8 85 324-413 215-303 (358)
428 TIGR00708 cobA cob(I)alamin ad 90.3 2.2 4.7E-05 43.3 10.2 33 306-338 8-40 (173)
429 PRK14086 dnaA chromosomal repl 90.3 1.8 3.9E-05 52.1 11.1 43 304-347 315-359 (617)
430 PRK11823 DNA repair protein Ra 90.2 1.4 2.9E-05 51.5 9.9 50 302-352 79-128 (446)
431 CHL00095 clpC Clp protease ATP 90.2 0.67 1.4E-05 58.2 7.8 41 284-324 512-560 (821)
432 TIGR02538 type_IV_pilB type IV 90.2 1.4 3E-05 53.0 10.2 49 282-336 300-349 (564)
433 KOG1016 Predicted DNA helicase 90.2 1.9 4.2E-05 52.0 10.8 76 281-357 254-337 (1387)
434 cd01130 VirB11-like_ATPase Typ 90.1 0.59 1.3E-05 47.6 6.1 52 281-339 9-60 (186)
435 TIGR03689 pup_AAA proteasome A 90.0 2.2 4.8E-05 50.4 11.4 20 301-320 214-233 (512)
436 PF03354 Terminase_1: Phage Te 90.0 0.85 1.8E-05 53.6 8.0 76 284-359 1-82 (477)
437 TIGR01241 FtsH_fam ATP-depende 89.9 4.1 8.9E-05 48.1 13.7 20 301-320 86-105 (495)
438 COG0593 DnaA ATPase involved i 89.9 2.7 5.8E-05 48.3 11.6 17 303-319 113-129 (408)
439 KOG0332 ATP-dependent RNA heli 89.9 0.82 1.8E-05 51.0 7.1 73 332-410 331-403 (477)
440 PRK11034 clpA ATP-dependent Cl 89.7 1.6 3.5E-05 54.1 10.5 25 301-325 205-229 (758)
441 PRK09354 recA recombinase A; P 89.7 0.99 2.1E-05 50.8 7.9 57 288-346 46-103 (349)
442 PF00437 T2SE: Type II/IV secr 89.6 0.45 9.8E-06 51.3 5.0 40 303-343 127-167 (270)
443 COG3972 Superfamily I DNA and 89.5 2.4 5.1E-05 49.2 10.6 143 270-422 152-312 (660)
444 cd01131 PilT Pilus retraction 89.5 1.8 4E-05 44.6 9.2 37 306-343 4-42 (198)
445 PRK05973 replicative DNA helic 89.5 0.5 1.1E-05 50.3 5.1 52 301-353 62-113 (237)
446 PRK04328 hypothetical protein; 89.4 0.61 1.3E-05 49.9 5.8 52 301-353 21-72 (249)
447 cd01121 Sms Sms (bacterial rad 89.4 0.94 2E-05 51.5 7.5 50 302-352 81-130 (372)
448 TIGR03346 chaperone_ClpB ATP-d 89.4 1.8 3.9E-05 54.6 10.8 36 286-322 178-213 (852)
449 cd01394 radB RadB. The archaea 89.4 2 4.4E-05 44.5 9.6 37 301-337 17-53 (218)
450 cd01129 PulE-GspE PulE/GspE Th 89.3 0.75 1.6E-05 49.8 6.4 55 282-342 64-119 (264)
451 PF00158 Sigma54_activat: Sigm 89.2 1.3 2.8E-05 44.6 7.6 20 301-320 20-39 (168)
452 PRK03992 proteasome-activating 88.9 3.2 6.9E-05 47.6 11.4 21 301-321 163-183 (389)
453 PRK08533 flagellar accessory p 88.7 0.83 1.8E-05 48.4 6.1 51 301-352 22-72 (230)
454 PRK01172 ski2-like helicase; P 88.7 1.8 3.9E-05 53.1 9.9 89 327-417 232-340 (674)
455 PRK04195 replication factor C 88.5 4.2 9.1E-05 47.9 12.4 52 285-339 21-72 (482)
456 PF12846 AAA_10: AAA-like doma 88.5 0.65 1.4E-05 50.0 5.3 42 304-345 2-43 (304)
457 COG1485 Predicted ATPase [Gene 88.4 3.8 8.2E-05 45.9 11.0 54 272-327 16-87 (367)
458 PRK13531 regulatory ATPase Rav 88.2 1.8 4E-05 50.6 8.9 34 286-322 25-58 (498)
459 PF00271 Helicase_C: Helicase 88.1 0.99 2.1E-05 38.6 5.2 55 360-415 7-61 (78)
460 TIGR02858 spore_III_AA stage I 88.1 2.6 5.6E-05 45.9 9.5 24 303-327 111-134 (270)
461 TIGR03346 chaperone_ClpB ATP-d 87.9 1.1 2.3E-05 56.6 7.4 42 284-325 568-617 (852)
462 PRK06835 DNA replication prote 87.9 1.2 2.6E-05 49.8 7.0 44 303-347 183-226 (329)
463 PRK09751 putative ATP-dependen 87.9 2 4.4E-05 56.6 10.0 90 324-414 237-354 (1490)
464 PHA00350 putative assembly pro 87.9 1.2 2.6E-05 50.9 7.0 32 304-335 2-34 (399)
465 TIGR00767 rho transcription te 87.9 2.6 5.7E-05 48.2 9.7 28 300-328 165-192 (415)
466 TIGR02238 recomb_DMC1 meiotic 87.8 2.6 5.6E-05 46.9 9.5 49 289-339 84-138 (313)
467 PRK09376 rho transcription ter 87.6 2.1 4.6E-05 48.9 8.6 31 286-320 156-186 (416)
468 COG0468 RecA RecA/RadA recombi 87.3 1.9 4E-05 47.1 7.8 41 303-343 60-100 (279)
469 PRK10865 protein disaggregatio 87.3 3.2 6.9E-05 52.4 11.0 36 289-325 186-221 (857)
470 PF03969 AFG1_ATPase: AFG1-lik 87.2 8.9 0.00019 43.6 13.5 24 301-326 60-83 (362)
471 PRK00254 ski2-like helicase; P 87.2 2.3 5E-05 52.6 9.6 90 322-412 229-346 (720)
472 cd00984 DnaB_C DnaB helicase C 86.9 0.83 1.8E-05 48.1 4.8 39 301-339 11-50 (242)
473 PRK14721 flhF flagellar biosyn 86.6 6.1 0.00013 45.7 11.9 123 303-453 191-323 (420)
474 CHL00095 clpC Clp protease ATP 86.5 4 8.6E-05 51.4 11.2 27 300-326 197-223 (821)
475 COG1201 Lhr Lhr-like helicases 86.5 4.5 9.7E-05 50.3 11.3 103 303-410 220-327 (814)
476 TIGR03880 KaiC_arch_3 KaiC dom 86.5 0.98 2.1E-05 47.2 5.0 52 301-353 14-65 (224)
477 TIGR03881 KaiC_arch_4 KaiC dom 86.5 1 2.2E-05 47.2 5.1 39 301-339 18-56 (229)
478 PRK14712 conjugal transfer nic 86.4 5.4 0.00012 53.1 12.5 118 282-437 282-402 (1623)
479 PF02572 CobA_CobO_BtuR: ATP:c 86.3 6.8 0.00015 39.8 10.7 37 306-342 6-42 (172)
480 TIGR02974 phageshock_pspF psp 86.3 3.1 6.8E-05 46.5 9.1 19 302-320 21-39 (329)
481 COG0467 RAD55 RecA-superfamily 86.0 0.97 2.1E-05 48.5 4.8 54 301-356 21-74 (260)
482 TIGR01970 DEAH_box_HrpB ATP-de 86.0 2.1 4.7E-05 53.5 8.4 78 331-411 209-286 (819)
483 TIGR01243 CDC48 AAA family ATP 85.9 5.9 0.00013 49.2 12.2 21 301-321 485-505 (733)
484 PLN03137 ATP-dependent DNA hel 85.2 3.2 7E-05 53.0 9.4 75 331-411 680-754 (1195)
485 COG1223 Predicted ATPase (AAA+ 85.2 6.6 0.00014 42.3 10.2 41 303-347 151-191 (368)
486 TIGR01420 pilT_fam pilus retra 85.2 4.3 9.3E-05 45.7 9.6 40 303-343 122-163 (343)
487 KOG2036 Predicted P-loop ATPas 85.1 7.1 0.00015 47.0 11.4 148 282-442 254-412 (1011)
488 PRK09361 radB DNA repair and r 85.1 1.3 2.8E-05 46.3 5.2 39 301-339 21-59 (225)
489 PF02534 T4SS-DNA_transf: Type 85.0 1 2.2E-05 52.6 4.7 58 304-368 45-102 (469)
490 TIGR02533 type_II_gspE general 85.0 1.4 3.1E-05 51.9 5.9 50 282-337 226-276 (486)
491 PRK15429 formate hydrogenlyase 84.8 4.3 9.3E-05 50.0 10.2 19 302-320 398-416 (686)
492 PRK06067 flagellar accessory p 84.8 1.5 3.2E-05 46.3 5.4 52 301-353 23-74 (234)
493 PHA02542 41 41 helicase; Provi 84.5 1.9 4E-05 50.7 6.5 49 303-352 190-238 (473)
494 PRK07414 cob(I)yrinic acid a,c 84.4 3.1 6.7E-05 42.4 7.2 36 306-341 24-59 (178)
495 TIGR02688 conserved hypothetic 84.4 3.8 8.2E-05 47.3 8.6 65 265-331 170-238 (449)
496 COG1219 ClpX ATP-dependent pro 84.3 0.71 1.5E-05 50.7 2.7 19 304-322 98-116 (408)
497 COG0210 UvrD Superfamily I DNA 84.2 2.5 5.3E-05 51.7 7.7 79 281-368 2-86 (655)
498 TIGR01243 CDC48 AAA family ATP 84.1 8.8 0.00019 47.7 12.6 19 302-320 211-229 (733)
499 PRK02362 ski2-like helicase; P 84.1 4.6 0.0001 50.2 10.1 87 324-411 236-353 (737)
500 PRK14701 reverse gyrase; Provi 84.0 5.6 0.00012 53.4 11.2 82 491-573 121-211 (1638)
No 1
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.5e-139 Score=1243.36 Aligned_cols=697 Identities=40% Similarity=0.666 Sum_probs=634.8
Q ss_pred HHHHHHHHHhhhhhhcCCcCCCCCCCCCCCCCCCCCCCceeeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCcc
Q 003268 106 IQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI 185 (835)
Q Consensus 106 ~~~~~e~~~~g~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~ 185 (835)
..+++|++.+|.+.+++.++++... .-....|+.+|++||||||.+||||+|.|++.... +|.++
T Consensus 436 l~vItE~el~g~r~~~~~~~k~~~~-------------~~~~i~~~~eL~~Gd~VVH~~HGIGrflgl~tl~~--~g~~~ 500 (1139)
T COG1197 436 LAVITESELLGSRVKRRRRRKRRKK-------------NATRIKDLAELKPGDYVVHIDHGIGRFLGLETLEV--GGIER 500 (1139)
T ss_pred EEEEechHhhhhHhhhhhhhhhhhc-------------chhhhcchhhCCCCCeEEeccCCceeeeeeEEEec--CCCcc
Confidence 5678999999998887633222111 11233488899999999999999999999994332 37899
Q ss_pred ceEEEEEcCCC-cccChhhhhHHhhhccCCCCCCchHHHhhccCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q 003268 186 EYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264 (835)
Q Consensus 186 ~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~l~~~r~~~~~~~ 264 (835)
||+.|+|++++ ++||++|+ ++++||++.+++ .|+|+|||+ +.|++.|.|++++++++|.+|+++|++|+...|++
T Consensus 501 dyL~l~Ya~~dkLyVPVeql-~lisrY~g~~~~--~p~L~kLG~-~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~a 576 (1139)
T COG1197 501 DYLELEYAGEDKLYVPVEQL-HLISRYVGASDE--APKLHKLGG-GAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFA 576 (1139)
T ss_pred ceEEEEEcCCCeEEEEHHHh-hHHhhccCCCCC--CccccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999996 89999996 789999987753 699999985 89999999999999999999999999999999999
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
|+++. |+.+|++.|||+.||+|..||++|++|| +++++||+|||||+|+|||+||++|+++++.+|+||+|||||+.|
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM-~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlL 655 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDM-ESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLL 655 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHh-ccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHh
Confidence 99988 9999999999999999999999999999 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHH
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e 423 (835)
|+||+++|++||.+|| ++|..++++.+.+++...++.+++|++|||||||.+|++++.|+|+|||||||+||||++|++
T Consensus 656 A~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KE 734 (1139)
T COG1197 656 AQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKE 734 (1139)
T ss_pred HHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHH
Confidence 9999999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCcc
Q 003268 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 424 ~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~ 503 (835)
+|+.++.+++||+|||||+|||++|++.|++|.|+|.+||.+|.||+|++.++++..+.++|.+++.|||||++++|+++
T Consensus 735 kLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~ 814 (1139)
T COG1197 735 KLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVE 814 (1139)
T ss_pred HHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHh
Q 003268 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 583 (835)
Q Consensus 504 ~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~ 583 (835)
+++.+++.|++++|+++|++.||+|+..+.+++|.+|.+|+++|||||+|+|+||||||+||+|+.++++||++|+||++
T Consensus 815 ~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLR 894 (1139)
T COG1197 815 SIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLR 894 (1139)
T ss_pred hHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHH
Q 003268 584 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L~ 663 (835)
||+||+++.||||++|++.+.+++.+.+||.+|+.++++|+||.||++||+|||+||+||.+|||+|+.|||++|++||+
T Consensus 895 GRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaGNlLG~eQSG~I~~VGf~LY~~mLe 974 (1139)
T COG1197 895 GRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAGNLLGEEQSGHIESVGFDLYMEMLE 974 (1139)
T ss_pred cccCCccceEEEEEeecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccccccCccccCchheecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccCcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 003268 664 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743 (835)
Q Consensus 664 ~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~ 743 (835)
+||+++++..........+.+++++++++|+.||++...|+++|+|++.+. +.+++.++.+||+||||++|+++++||
T Consensus 975 eAI~~lk~~~e~~~~~~~~eIdL~~~a~iPe~YI~d~~~rl~~YkRi~~~~--s~~el~~i~~EliDRFG~lP~ev~~Ll 1052 (1139)
T COG1197 975 EAIAALKGSLEVLEEEKEVEIDLPVPAFIPEDYIPDDNLRLELYKRLANAE--SEEELEEIKEELIDRFGPLPDEVKNLL 1052 (1139)
T ss_pred HHHHHHhcCCcccccCCCeeEecCCCCcCChhhccCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999983222233457899999999999999999999999999999976 557999999999999999999999999
Q ss_pred HHHHHHHHhhhcCccEEEecCcEEEEEecCCHHH-HHHHHHhhcccccccceeeeCCeeEEEEEec-CCcHHHHHHHHHH
Q 003268 744 KKLYVRRMAADIGITKIYASGKMVGMKTNMNKKV-FKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-LPREQLLNWIFQC 821 (835)
Q Consensus 744 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 821 (835)
.+++||.+|+++||.+|...++.+.+.+..+..+ ...+...++......++ . +..++.+... ...+++++++..+
T Consensus 1053 ~i~~lk~la~~lgI~~i~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~l~~~~~~ 1129 (1139)
T COG1197 1053 DIAELKLLARKLGIEKIDAGENGVVIEFSKNEQVNPKKLIKLLQKQPLKAKL--K-GDTKLLFIKDLIEPEERLDAVAKL 1129 (1139)
T ss_pred HHHHHHHHHHHcCCeeeccCCceEEEEeccccccCHHHHHHHhhccceeeec--C-CCceEEEecccCCHHHHHHHHHHH
Confidence 9999999999999999999999999887654211 11233333332222222 2 3344444334 4567789999999
Q ss_pred HHHHHhh
Q 003268 822 LAELYAS 828 (835)
Q Consensus 822 ~~~~~~~ 828 (835)
+..|...
T Consensus 1130 l~~L~~~ 1136 (1139)
T COG1197 1130 LKALAEL 1136 (1139)
T ss_pred HHHHHhh
Confidence 9888653
No 2
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4.8e-110 Score=1030.32 Aligned_cols=693 Identities=33% Similarity=0.592 Sum_probs=602.2
Q ss_pred HHHHHHHHHhhhhhhcCCcCCCCCCCCCCCCCCCCCCCceeeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCcc
Q 003268 106 IQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI 185 (835)
Q Consensus 106 ~~~~~e~~~~g~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~ 185 (835)
..+++|.+++|.+.++++++++...+ .....-+..+|++||||||.+||||+|.|++....+ |..+
T Consensus 441 ~~vite~eifg~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~Gd~VVh~~~Gig~~~gi~~~~~~--g~~~ 506 (1147)
T PRK10689 441 LALICESDLLGERVARRRQDSRRTIN------------PDTLIRNLAELHPGQPVVHLEHGVGRYAGMTTLEAG--GIKG 506 (1147)
T ss_pred EEEEEhHHhhCccccccccccccccc------------hhhcccchhhCCCCCEEEecCCCeEEEeeEEEEecC--Ccce
Confidence 56789999999753333231121110 001112567999999999999999999999943322 6789
Q ss_pred ceEEEEEcCCC-cccChhhhhHHhhhccCCCCCCchHHHhhccCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q 003268 186 EYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264 (835)
Q Consensus 186 ~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~l~~~r~~~~~~~ 264 (835)
||+.|+|++++ +++|++++ ++++||.+.++. .|+|++||+ +.|++.|.|++++++++|.+|+++|++|...++++
T Consensus 507 ~~~~l~y~~~~~l~vPv~~~-~~~~~y~~~~~~--~~~l~~lg~-~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~ 582 (1147)
T PRK10689 507 EYLMLTYANDAKLYVPVSSL-HLISRYAGGAEE--NAPLHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 (1147)
T ss_pred eEEEEEECCCCeEEeeHHHh-CcEeeecCCCCC--CCccccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999886 78999996 689999986643 689999985 89999999999999999999999999999999999
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
|+++. |+.+|.+.|||+||++|.+||+.++.+| +++.+||+|+|||||||||++|+.+++.++.++++++||+||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~-~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-hcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 98887 9999999999999999999999999998 467889999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHH
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e 423 (835)
|.|+++.|+++|..+ ++++.+++++.+..++...+..+.+|.++||||||+++...+.++++++|||||+|+||+.+.+
T Consensus 662 A~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~~e 740 (1147)
T PRK10689 662 AQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRHKE 740 (1147)
T ss_pred HHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhHHH
Confidence 999999999888877 5899999999999998888888988999999999999988888999999999999999999999
Q ss_pred HHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCcc
Q 003268 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 424 ~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~ 503 (835)
.++.++.++++++|||||+|+++.++..++++++.+.++|..+.++.+++..+....+..++..++.+++|++||||+++
T Consensus 741 ~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~ 820 (1147)
T PRK10689 741 RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVE 820 (1147)
T ss_pred HHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 99888899999999999999999999999999999999888888888887776665677888888889999999999999
Q ss_pred ChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHh
Q 003268 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 583 (835)
Q Consensus 504 ~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~ 583 (835)
.++.+++.|.+.+|+++|.++||+|++.+|+++|.+|++|+++|||||+++++|||+|++++||+.++++|++++|+||+
T Consensus 821 ~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~ 900 (1147)
T PRK10689 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 (1147)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHH
Q 003268 584 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L~ 663 (835)
||+||.|+.|+||+++++...+++.+.+||.++++++++|+||.||++||+|||+||++|.+|||++..+||++|++||+
T Consensus 901 GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g~~~~~g~~~y~~~l~ 980 (1147)
T PRK10689 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGQMETIGFSLYMELLE 980 (1147)
T ss_pred hccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCCccCCCCccCCCccccCHHHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccc-cc--CcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHH
Q 003268 664 ESLSKVDEHCVIS-VP--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSME 740 (835)
Q Consensus 664 ~ai~~l~~~~~~~-~~--~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~ 740 (835)
+|+.++++..... .+ ...+.+++++++++|+.||++...|+++|+|++.+. +.+++.++.+||.||||++|.+++
T Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~yi~~~~~r~~~y~~~~~~~--~~~~~~~~~~e~~drfg~~p~~~~ 1058 (1147)
T PRK10689 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK--NENELEEIKVELIDRFGLLPDPAR 1058 (1147)
T ss_pred HHHHHHhcCCCcccccccCCceEEecCCCccCChhhcCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCcHHHH
Confidence 9999888432111 11 135789999999999999999999999999999976 457899999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCccEEEecCcEEEEEecCC-----HHHHHHHHHhhcccccccceeeeCCeeEEEEEecCC-cHHH
Q 003268 741 ILLKKLYVRRMAADIGITKIYASGKMVGMKTNMN-----KKVFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP-REQL 814 (835)
Q Consensus 741 ~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 814 (835)
+||.+++||++|+++||.+|....+...+.+... ..++.++ .. ....+.+.++ ..+.+....+ ..+.
T Consensus 1059 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~-~~~~~~~~~~~~~~~ 1131 (1147)
T PRK10689 1059 NLLDIARLRQQAQKLGIRKLEGNEKGGFIEFAEKNHVDPAWLIGLL----QK--QPQHYRLDGP-TRLKFIQDLSERKTR 1131 (1147)
T ss_pred HHHHHHHHHHHHHHCCCcEEEecCCceEEEEcCCCCcCHHHHHHHH----hh--cCcEEEECCC-ceEEEecCCCCHHHH
Confidence 9999999999999999999985443334444321 2222322 22 2334444432 2333333444 4456
Q ss_pred HHHHHHHHHHHHh
Q 003268 815 LNWIFQCLAELYA 827 (835)
Q Consensus 815 ~~~~~~~~~~~~~ 827 (835)
++++.++|..+.+
T Consensus 1132 ~~~~~~~l~~l~~ 1144 (1147)
T PRK10689 1132 IEWVRQFMRELEE 1144 (1147)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 3
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.2e-110 Score=1011.13 Aligned_cols=630 Identities=41% Similarity=0.697 Sum_probs=575.5
Q ss_pred HHHHHHHHHhhhhhhcCCcCCCCCCCCCCCCCCCCCCCceeeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCcc
Q 003268 106 IQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPI 185 (835)
Q Consensus 106 ~~~~~e~~~~g~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~ 185 (835)
..+++|.+.+|.+.++++++++. + +.. ..+..+|++||||||.+||||+|.|++..... |..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~---~~~~~~l~~Gd~VVh~~~Gig~~~gi~~~~~~--g~~~ 357 (926)
T TIGR00580 295 LAVITESELFGSRVLRRPKKSRL--K----------SKP---IESLNELNPGDYVVHLDHGIGRFLGLETLEVG--GIER 357 (926)
T ss_pred EEEEehHHhhchhhcchhhhccc--c----------ccc---cCchhhCCCCCEEEecCCCeEEEeeEEEEecC--Ccce
Confidence 45678889998763333222221 1 001 12567999999999999999999999843322 5789
Q ss_pred ceEEEEEcCCC-cccChhhhhHHhhhccCCCCCCchHHHhhccCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q 003268 186 EYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPP 264 (835)
Q Consensus 186 ~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~l~~~r~~~~~~~ 264 (835)
||+.|+|++++ +++|++++ ++++||.+.++ ..|+|++||+ +.|++.|.+++++++++|.+|+++|++|....+++
T Consensus 358 dy~~l~y~~~~~l~vPv~~~-~~~~~y~~~~~--~~~~l~~lg~-~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~ 433 (926)
T TIGR00580 358 DYLVLEYAGEDKLYVPVEQL-HLISRYVGGSG--KNPALDKLGG-KSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHA 433 (926)
T ss_pred eEEEEEECCCCEEEEEHHHc-CceeeecCCCC--CCCcccccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999987 89999997 68999998654 3699999985 89999999999999999999999999999999999
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
++++. ++..|.+.|||+|||+|.+||+.++++|. ++.+||+|+|||||||||++|+++++.++.+++|++||+||++|
T Consensus 434 ~~~~~~~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~-~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~L 512 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPFEETPDQLKAIEEIKADME-SPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLL 512 (926)
T ss_pred CCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhc-ccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHH
Confidence 98877 99999999999999999999999999994 67789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHH
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE 423 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e 423 (835)
|.||++.|+++|..+ ++++..++|+.+..++.+.++.+.+|+++||||||.++.+.+.|+++++|||||+|+||+.+++
T Consensus 513 A~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~~~ 591 (926)
T TIGR00580 513 AQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQKE 591 (926)
T ss_pred HHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhHHH
Confidence 999999999988887 5999999999998888899999999999999999999988889999999999999999999999
Q ss_pred HHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCcc
Q 003268 424 KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 424 ~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~ 503 (835)
.+..++.++++|+|||||+|+++.+++.+..+++++.++|..+.++.+++..++...+..++.+.+.+++|++||||+++
T Consensus 592 ~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~ 671 (926)
T TIGR00580 592 KLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIE 671 (926)
T ss_pred HHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 99998889999999999999999999999999999999999999999988877777778888888999999999999999
Q ss_pred ChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHh
Q 003268 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLR 583 (835)
Q Consensus 504 ~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~ 583 (835)
+++.+++.|++.+|+++|..+||+|++.+|+++|.+|++|+++|||||+++++|||+|++++||++++++|++++|+||+
T Consensus 672 ~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~ 751 (926)
T TIGR00580 672 SIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLR 751 (926)
T ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHH
Q 003268 584 GRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L~ 663 (835)
||+||.|+.|+||+++++...+++.+.+||.++++++++|+||.+|++||+|||+||+||.+|||++..+||++|++||+
T Consensus 752 GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG~~~~~~~~~~~~~l~ 831 (926)
T TIGR00580 752 GRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEIRGAGNLLGEEQSGHIESIGFDLYMELLE 831 (926)
T ss_pred cCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCcCCCCCcccCchhhccHHHHHHHHH
Confidence 99999999999999999887788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccccccCcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHH
Q 003268 664 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILL 743 (835)
Q Consensus 664 ~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~ 743 (835)
+|+.+++++.... ....+.+++++++++|+.||++...|+++|+|++.+. +.+++.++.+||.||||++|.++++||
T Consensus 832 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~ip~~yi~~~~~r~~~y~~~~~~~--~~~~~~~~~~e~~drfg~~p~~~~~l~ 908 (926)
T TIGR00580 832 EAIEELKGGKPPK-LEEETDIELPYSAFIPDDYIADDSLRLEFYKRIASAE--TEEELEKIRDELIDRFGPLPEEARTLL 908 (926)
T ss_pred HHHHHHhcCCCCC-CCCceEEecCCCCcCChhhcCChHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 9999998322111 2236789999999999999999999999999999976 457899999999999999999999999
Q ss_pred HHHHHHHHhhhcCccEEE
Q 003268 744 KKLYVRRMAADIGITKIY 761 (835)
Q Consensus 744 ~~~~~~~~~~~~~~~~i~ 761 (835)
.+++||++|+++||.+|.
T Consensus 909 ~~~~~~~~~~~~~~~~~~ 926 (926)
T TIGR00580 909 DVARLKLLARKLGIRKLK 926 (926)
T ss_pred HHHHHHHHHHHcCCeeeC
Confidence 999999999999999873
No 4
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6e-71 Score=628.46 Aligned_cols=425 Identities=36% Similarity=0.601 Sum_probs=386.7
Q ss_pred hHHHhhccCCchHHHH-HHHHHHhHHHHHHHHHHHHHHHH---hcCCCCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHH
Q 003268 220 PRTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELYLHRL---KQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 220 ~~~l~~l~~~~~w~~~-~~~~~~~~~~~~~~l~~l~~~r~---~~~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il 294 (835)
...|..+|.+.+-... ..+.+...+|...-.+.+...|. +..+.+++.+. +.+.|.+..||+||..|++++.+|.
T Consensus 196 ~~al~~lH~P~~~~~~~~~~rRL~f~Ell~~ql~l~~~r~~~~~~~~~~~~~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~ 275 (677)
T COG1200 196 DEALRTLHFPKDEEDLKRARRRLAFEELLALQLSLLLRRAKRQKRSGIPLPANGELLAKFLAALPFKLTNAQKRVIKEIL 275 (677)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 4678888887766443 33456666766543333333333 34556677666 8999999999999999999999999
Q ss_pred HhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHH
Q 003268 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 295 ~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e 374 (835)
.|| .++.+|++|++||+|||||.|++++++.++.+|.|+++++||-.||.||++.+.+.|..+ |++|++++|......
T Consensus 276 ~Dl-~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~ 353 (677)
T COG1200 276 ADL-ASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKA 353 (677)
T ss_pred hhh-cCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhH
Confidence 999 568899999999999999999999999999999999999999999999999999998887 799999999999999
Q ss_pred HHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcC-CceEEEeecCCChhhHHHHHhcC
Q 003268 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI-SVDVLTLSATPIPRTLYLALTGF 453 (835)
Q Consensus 375 ~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~-~~~vL~lSATp~p~tl~~~~~~~ 453 (835)
+++.+..+.+|.++||||||.++++.+.|+++++|||||.||||+.|+..|..... +.++|.|||||+|||+.+...+.
T Consensus 354 r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgD 433 (677)
T COG1200 354 RKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGD 433 (677)
T ss_pred HHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988 79999999999999999999999
Q ss_pred CCcceeeCCCCCccceeEEecc-cCHHHHHHHHHHHHhcCCeEEEEecCccCh--------HHHHHHHHhhCCCCcEEEE
Q 003268 454 RDASLISTPPPERLPIKTHLSA-FSKEKVISAIKYELDRGGQVFYVLPRIKGL--------EEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 454 ~d~s~i~~~p~~r~~V~~~~~~-~~~~~~~~~i~~~l~~ggqvlVf~~~v~~i--------e~l~~~L~~~~p~~~V~~l 524 (835)
.|.|+|...|++|.||.|++.. ...+.+.+.+..++..|.|++|+||.+++. +.+++.|+..+|+++|..+
T Consensus 434 ldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~ 513 (677)
T COG1200 434 LDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLV 513 (677)
T ss_pred ccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEE
Confidence 9999999999999999999876 456788999999999999999999998764 4667889988999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 525 HG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||+|+.++++++|++|++|+++|||||+++|.|||+||++.+|+.|+.+||++|+||.+||+||++.++||++++.+..
T Consensus 514 HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~- 592 (677)
T COG1200 514 HGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL- 592 (677)
T ss_pred ecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998773
Q ss_pred CCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcc
Q 003268 605 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 651 (835)
Q Consensus 605 ~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~ 651 (835)
++.+.+|+..+++++ +||.||++||++||.|++||..|||.++
T Consensus 593 -~~~a~~RL~im~~t~---DGF~IAE~DLklRGpGe~lG~rQSG~~~ 635 (677)
T COG1200 593 -SEVAKQRLKIMRETT---DGFVIAEEDLKLRGPGELLGTRQSGLPE 635 (677)
T ss_pred -ChhHHHHHHHHHhcC---CcceehhhhHhccCCccccCCcccCCcc
Confidence 478899999999887 4999999999999999999999999776
No 5
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.8e-60 Score=568.47 Aligned_cols=425 Identities=36% Similarity=0.602 Sum_probs=367.4
Q ss_pred hHHHhhccCCchHHHH-HHHHHHhHHHHHHHHHHHHHHHH---hcCCCCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHH
Q 003268 220 PRTLSKLSDTTAWERR-KTKGKVAIQKMVVDLMELYLHRL---KQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 220 ~~~l~~l~~~~~w~~~-~~~~~~~~~~~~~~l~~l~~~r~---~~~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il 294 (835)
..+|..+|.|.+.... ..+.+.+.+|+..-.+.+...|. ...+.+++.+. +.+.|.+.+||+||++|.+|++.|.
T Consensus 195 ~~al~~iH~P~~~~~~~~a~~rl~~~El~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~lt~~Q~~ai~~I~ 274 (681)
T PRK10917 195 AEALRAIHFPPSDEDLHPARRRLKFEELFALQLSLLLLRAGRRSKKAGPLPYDGELLKKFLASLPFELTGAQKRVVAEIL 274 (681)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 4578889988776553 34556677776533333322222 22333444344 8899999999999999999999999
Q ss_pred HhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHH
Q 003268 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 295 ~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e 374 (835)
+++. ++.+|++|++||||||||++|+.+++..+.+|.+++|++||++||.|+++.+++.+..+ ++++++++|+.+..+
T Consensus 275 ~d~~-~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~ 352 (681)
T PRK10917 275 ADLA-SPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKE 352 (681)
T ss_pred Hhhh-ccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHH
Confidence 9984 56789999999999999999999999999999999999999999999999999877665 799999999999999
Q ss_pred HHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCC
Q 003268 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454 (835)
Q Consensus 375 ~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~ 454 (835)
+...+..+.+|.++|+||||+++.+.+.|+++++|||||+|+||+.++..+.......++|+|||||+|+++.+...+..
T Consensus 353 r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~ 432 (681)
T PRK10917 353 RREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDL 432 (681)
T ss_pred HHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCC
Confidence 99999999999999999999999988889999999999999999999988887777789999999999999998888888
Q ss_pred CcceeeCCCCCccceeEEecccC-HHHHHHHHHHHHhcCCeEEEEecCccC--------hHHHHHHHHhhCCCCcEEEEc
Q 003268 455 DASLISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVDIAIAH 525 (835)
Q Consensus 455 d~s~i~~~p~~r~~V~~~~~~~~-~~~~~~~i~~~l~~ggqvlVf~~~v~~--------ie~l~~~L~~~~p~~~V~~lH 525 (835)
+.+.+...|..+.++.+.+.... .+.+.+.+.+.+..+.|++||||.+++ ++.+++.|...+++++|..+|
T Consensus 433 ~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lH 512 (681)
T PRK10917 433 DVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLH 512 (681)
T ss_pred ceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 88888877777888877665443 456678888888899999999997654 456788888888889999999
Q ss_pred CCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCcC
Q 003268 526 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 605 (835)
Q Consensus 526 G~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~ 605 (835)
|+|++.+|+.++++|++|+.+|||||+++++|||+|++++||++++++|++++++||+||+||.|..|+||++++.. .
T Consensus 513 G~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~--~ 590 (681)
T PRK10917 513 GRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP--L 590 (681)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999643 3
Q ss_pred CHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcc
Q 003268 606 SDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 651 (835)
Q Consensus 606 ~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~ 651 (835)
++.+.+|+..+.... +||.+++.||++||.|+++|..|||.+.
T Consensus 591 ~~~~~~rl~~~~~~~---dgf~iae~dl~~rg~g~~~g~~q~g~~~ 633 (681)
T PRK10917 591 SETARERLKIMRETN---DGFVIAEKDLELRGPGELLGTRQSGLPE 633 (681)
T ss_pred ChhHHHHHHHHHHhc---chHHHHHHhHhhCCCccccCceecCCCC
Confidence 567889999988765 5999999999999999999999999655
No 6
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.4e-60 Score=560.30 Aligned_cols=425 Identities=34% Similarity=0.598 Sum_probs=362.3
Q ss_pred hHHHhhccCCchHHHHH-HHHHHhHHHHHHHHHHHHHHHH----hcCCCCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHH
Q 003268 220 PRTLSKLSDTTAWERRK-TKGKVAIQKMVVDLMELYLHRL----KQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDV 293 (835)
Q Consensus 220 ~~~l~~l~~~~~w~~~~-~~~~~~~~~~~~~l~~l~~~r~----~~~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~I 293 (835)
...|..+|.|..++... .+.+...+|+..-.+.+...|. ...+.++..+. +..+|.+.+||+||+.|.+||++|
T Consensus 168 ~~al~~iH~P~~~~~~~~a~~rl~~~E~~~~ql~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I 247 (630)
T TIGR00643 168 EDALRAIHFPKTLSLLELARRRLIFDEFFYLQLAMLARRLGEKQQFSAPPANPSEELLTKFLASLPFKLTRAQKRVVKEI 247 (630)
T ss_pred HHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 35778888887765432 3455566666533222222222 22344454444 778899999999999999999999
Q ss_pred HHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHH
Q 003268 294 ERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKA 373 (835)
Q Consensus 294 l~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~ 373 (835)
+.++. ++.+|++|++||||||||++|+.+++..+.+|.+++|++||++||.|+++.+++.+..+ |+++.+++|+.+..
T Consensus 248 ~~~~~-~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~ 325 (630)
T TIGR00643 248 LQDLK-SDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGK 325 (630)
T ss_pred HHHhc-cCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHH
Confidence 99984 56789999999999999999999999999999999999999999999999999877665 79999999999998
Q ss_pred HHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcC---CceEEEeecCCChhhHHHHH
Q 003268 374 EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI---SVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 374 e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~---~~~vL~lSATp~p~tl~~~~ 450 (835)
++...+..+.+|+++|+||||+++.+.+.|+++++|||||+|+||+.++..+..... ..++|+|||||+|+++.+..
T Consensus 326 ~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~ 405 (630)
T TIGR00643 326 RRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV 405 (630)
T ss_pred HHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh
Confidence 888899999999999999999999988899999999999999999998888776655 78999999999999998887
Q ss_pred hcCCCcceeeCCCCCccceeEEecccC-HHHHHHHHHHHHhcCCeEEEEecCccC--------hHHHHHHHHhhCCCCcE
Q 003268 451 TGFRDASLISTPPPERLPIKTHLSAFS-KEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQAFPGVDI 521 (835)
Q Consensus 451 ~~~~d~s~i~~~p~~r~~V~~~~~~~~-~~~~~~~i~~~l~~ggqvlVf~~~v~~--------ie~l~~~L~~~~p~~~V 521 (835)
.+..+.+.+...|..+.++.+.+.... .+.+...+.+.+..+.+++|||+.+++ ++.+++.|.+.++++.|
T Consensus 406 ~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v 485 (630)
T TIGR00643 406 YGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNV 485 (630)
T ss_pred cCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcE
Confidence 777777777777777788877765443 346677778888889999999998753 55778888888889999
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecC
Q 003268 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601 (835)
Q Consensus 522 ~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~ 601 (835)
..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||++++++|++++|+||+||+||.|+.|+|++++..
T Consensus 486 ~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 486 GLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred CCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcc
Q 003268 602 KSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVG 651 (835)
Q Consensus 602 ~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~ 651 (835)
. .++.+.+|+..+..+. +||.+++.||++||.|++||..|||.+.
T Consensus 566 ~--~~~~~~~rl~~~~~~~---dgf~iae~dl~~Rg~g~~~g~~QsG~~~ 610 (630)
T TIGR00643 566 P--KSESAKKRLRVMADTL---DGFVIAEEDLELRGPGDLLGTKQSGYPE 610 (630)
T ss_pred C--CCHHHHHHHHHHHhhc---ccHHHHHHHHhcCCCcccCCCcccCCCc
Confidence 3 2567788888887765 5999999999999999999999999654
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5.6e-53 Score=461.67 Aligned_cols=459 Identities=23% Similarity=0.284 Sum_probs=354.8
Q ss_pred HHHHHHHHHHHHh-hhhhhcCCcCCCCCCCCCCCCCCCCCCCceeeeeCCCCCCCCCccc-----c--cccccEEEeeEE
Q 003268 103 DKYIQLVKEQQQK-GLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVV-----H--KKVGIGKFVGIK 174 (835)
Q Consensus 103 ~~~~~~~~e~~~~-g~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vv-----h--~~~G~g~~~g~~ 174 (835)
++-|++.+-+++| |..+-|+||..+... .+|+|+||..+++..||++ | ..+|.|...|++
T Consensus 96 ~~~K~~~ai~~rylg~~k~kkkk~r~~~~------------~kf~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d 163 (673)
T KOG0333|consen 96 DDEKEVRAIKERYLGEVKPKKKKGRRLND------------KKFVFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGID 163 (673)
T ss_pred hHHHHHHHHHHHHhcccCccccccccccc------------cceEEeecccccccccchhhhcCcccchhhccccccccc
Confidence 5778888888888 666656666666644 4999999999999999998 4 448999999998
Q ss_pred EeecCCCCCccceEEEEEcCCCcccChh----hhhHHhhhccCCCCCCchHHHhhccCCchHHHHHHHHHHhHHHHHHHH
Q 003268 175 FDVQKDSTVPIEYVFIEYADGMAKLPVK----QASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDL 250 (835)
Q Consensus 175 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~----~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l 250 (835)
...+. ..... |.+.++...++ |...++++-.. +....... ..+|..+....+...+|.. +
T Consensus 164 ~~~qk--k~~s~-----~~~~~e~r~t~~~ke~~~~~~qk~~k------~~~k~~~D-drhW~~k~l~Em~~rdwri--~ 227 (673)
T KOG0333|consen 164 VKEQK--KEKSK-----YGEMMEKRRTEDEKEQEEELLQKVCK------KEAKSGWD-DRHWSEKVLAEMTERDWRI--F 227 (673)
T ss_pred hHHHH--hhhhh-----hhhHhhhhcchhhhhhHHHHHHHhhh------hhhhcccc-ccchhhhhHHhcCCcccee--e
Confidence 54442 11111 33333332222 22223333211 12222222 3678877777777777776 6
Q ss_pred HHHHHHHHhcCCCCCC---------CChHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH
Q 003268 251 MELYLHRLKQKRPPYP---------KNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 251 ~~l~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val 321 (835)
.+.|+...+....+.| +.++++.+...++.+|||+|++||+..++ .+|+|..+.||||||.+|+
T Consensus 228 redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ-------~rD~igvaETgsGktaaf~ 300 (673)
T KOG0333|consen 228 REDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQ-------NRDPIGVAETGSGKTAAFL 300 (673)
T ss_pred ecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhc-------cCCeeeEEeccCCccccch
Confidence 7788877666554443 22367788888888999999999997764 4799999999999999999
Q ss_pred HHHHHHHh------------CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcce
Q 003268 322 RAIFCVVS------------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNI 389 (835)
Q Consensus 322 ~a~~~~~~------------~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dI 389 (835)
+|++..+. .|+.+++|+|||+||+|+.++-.. |+...|+++..+.|+.+..++.-++ ..| |+|
T Consensus 301 ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~k-f~~~lg~r~vsvigg~s~EEq~fql---s~g-cei 375 (673)
T KOG0333|consen 301 IPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNK-FGKPLGIRTVSVIGGLSFEEQGFQL---SMG-CEI 375 (673)
T ss_pred hhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHH-hcccccceEEEEecccchhhhhhhh---hcc-cee
Confidence 99886543 378999999999999999999876 8877799999999999988865444 446 999
Q ss_pred EecchHhhhc-----ccccccccEEEecccccc---chh-h-HHHHHhh-------------------------cCCceE
Q 003268 390 IVGTHSLLGS-----RVVYNNLGLLVVDEEQRF---GVK-Q-KEKIASF-------------------------KISVDV 434 (835)
Q Consensus 390 IIgT~~~L~~-----~l~~~~l~lVIIDEaHr~---g~~-~-~e~l~~~-------------------------~~~~~v 434 (835)
+|+||++|.+ .+.++++.+||+|||++| |+. + ...|..+ +...+.
T Consensus 376 viatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT 455 (673)
T KOG0333|consen 376 VIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQT 455 (673)
T ss_pred eecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEE
Confidence 9999999965 355789999999999985 542 1 2222222 123789
Q ss_pred EEeecCCChhhHHHHHhcCCCcceeeCCCCCcc--ceeEEecccCHHHHHHHHHHHHhcC--CeEEEEecCccChHHHHH
Q 003268 435 LTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKEKVISAIKYELDRG--GQVFYVLPRIKGLEEPMD 510 (835)
Q Consensus 435 L~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~--~V~~~~~~~~~~~~~~~i~~~l~~g--gqvlVf~~~v~~ie~l~~ 510 (835)
++||||++|....++..+++++.++.+....+. .+++.+...+.+.-...+...+..+ ..++||+|+++.|+.+++
T Consensus 456 ~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 456 VMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred EEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHH
Confidence 999999999999999999999988877543322 2444444444444466666666554 689999999999999999
Q ss_pred HHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC
Q 003268 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590 (835)
Q Consensus 511 ~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g 590 (835)
.|.+. ++++..+||+.++++|+.+++.|++|..+|||||+++++|||||||.+||+||+.. ++..|.||+||+||+|
T Consensus 536 ~LeK~--g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak-sieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 536 ILEKA--GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK-SIEDYTHRIGRTGRAG 612 (673)
T ss_pred HHhhc--cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhh-hHHHHHHHhccccccc
Confidence 99998 89999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CceEEEEEecCCCc
Q 003268 591 KEAHAYLFYPDKSL 604 (835)
Q Consensus 591 ~~G~ay~l~~~~~~ 604 (835)
+.|.|+.|+++++.
T Consensus 613 k~GtaiSflt~~dt 626 (673)
T KOG0333|consen 613 KSGTAISFLTPADT 626 (673)
T ss_pred cCceeEEEeccchh
Confidence 99999999998864
No 8
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-47 Score=428.82 Aligned_cols=339 Identities=22% Similarity=0.272 Sum_probs=277.7
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---------CCEE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---------GKQA 334 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---------g~qv 334 (835)
++.++ ....+...++-.|||+|.++|+.++. ++|++..+.||||||++|++|++..+.. ++++
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~-------GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALS-------GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceecc-------CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 45555 77788888888999999999999874 6899999999999999999999987765 6899
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEE
Q 003268 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLL 409 (835)
Q Consensus 335 lVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lV 409 (835)
|||+|||+||.|+.+.+.+ |+...++++.+++|+.+... +++.+.+| ++|+|+||++|.+ .+.+.++.++
T Consensus 169 LVL~PTRELA~QV~~~~~~-~~~~~~~~~~cvyGG~~~~~---Q~~~l~~g-vdiviaTPGRl~d~le~g~~~l~~v~yl 243 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEARE-FGKSLRLRSTCVYGGAPKGP---QLRDLERG-VDVVIATPGRLIDLLEEGSLNLSRVTYL 243 (519)
T ss_pred EEEcCcHHHHHHHHHHHHH-HcCCCCccEEEEeCCCCccH---HHHHHhcC-CcEEEeCChHHHHHHHcCCccccceeEE
Confidence 9999999999999999987 76666788999999988776 45666777 9999999999975 4567889999
Q ss_pred Eecccccc---chh-h-HHHHHhh-cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC----ccceeEEecccC--
Q 003268 410 VVDEEQRF---GVK-Q-KEKIASF-KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE----RLPIKTHLSAFS-- 477 (835)
Q Consensus 410 IIDEaHr~---g~~-~-~e~l~~~-~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~----r~~V~~~~~~~~-- 477 (835)
|+||||+| |+. + +..+.+. ++..|+|++|||.+..+..++..++.++..+.+.... ...+...+...+
T Consensus 244 VLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~ 323 (519)
T KOG0331|consen 244 VLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDET 323 (519)
T ss_pred EeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHH
Confidence 99999996 553 3 4445666 5566899999999999999998888877666554221 122333332222
Q ss_pred -HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcC
Q 003268 478 -KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554 (835)
Q Consensus 478 -~~~~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~ii 554 (835)
....+..+.... ..++++||||++++.|++++..|+.. ++.+..+||+.++.+|+.+++.|++|++.|||||+++
T Consensus 324 ~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~--~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA 401 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK--GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA 401 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc--CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc
Confidence 233344444444 35689999999999999999999987 6899999999999999999999999999999999999
Q ss_pred ccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHh
Q 003268 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECR 620 (835)
Q Consensus 555 e~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~ 620 (835)
++|||||+|++||+||+|. +.++|+||+||+||+|+.|.+|.|++.... ..+.+-...+++..
T Consensus 402 aRGLDi~dV~lVInydfP~-~vEdYVHRiGRTGRa~~~G~A~tfft~~~~--~~a~~l~~~l~e~~ 464 (519)
T KOG0331|consen 402 ARGLDVPDVDLVINYDFPN-NVEDYVHRIGRTGRAGKKGTAITFFTSDNA--KLARELIKVLREAG 464 (519)
T ss_pred cccCCCccccEEEeCCCCC-CHHHHHhhcCccccCCCCceEEEEEeHHHH--HHHHHHHHHHHHcc
Confidence 9999999999999999998 999999999999999999999999987754 33444444554443
No 9
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.3e-46 Score=430.16 Aligned_cols=325 Identities=22% Similarity=0.232 Sum_probs=266.6
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPt 340 (835)
++.++ +.+.+.+.++.+|||+|.+||+.++. ++|++++||||||||++|++|++..+.. +.+++|++||
T Consensus 9 l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~-------g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Pt 81 (460)
T PRK11776 9 LPLPPALLANLNELGYTEMTPIQAQSLPAILA-------GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPT 81 (460)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCC
Confidence 45555 78888888888999999999999874 5799999999999999999999988754 3489999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++||.|+++.++.....++++++..++|+.+...+.. .+. ..++|+||||+.|.+ .+.+.++++||+||||
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~-~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLE-HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---Hhc-CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 9999999999987444445789999999887766443 334 348999999998864 3567899999999999
Q ss_pred cc---ch--hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc-cceeEEecccCHHHHHHHHHHHH
Q 003268 416 RF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFSKEKVISAIKYEL 489 (835)
Q Consensus 416 r~---g~--~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r-~~V~~~~~~~~~~~~~~~i~~~l 489 (835)
++ ++ .....+..++...+++++|||+++....++...+.++..+....... ..+..++.........+.+...+
T Consensus 158 ~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll 237 (460)
T PRK11776 158 RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLL 237 (460)
T ss_pred HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHH
Confidence 85 33 23445566677889999999998888777777777776665543322 22444443344333444555444
Q ss_pred h--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEE
Q 003268 490 D--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 490 ~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VI 567 (835)
. .+++++||||+++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|++++||
T Consensus 238 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~--~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 238 LHHQPESCVVFCNTKKECQEVADALNAQ--GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HhcCCCceEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 3 3478999999999999999999988 88999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++.|. +..+|+||+||+||.|+.|.||+|+++++
T Consensus 316 ~~d~p~-~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 316 NYELAR-DPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred EecCCC-CHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 999996 89999999999999999999999998764
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-45 Score=425.16 Aligned_cols=322 Identities=24% Similarity=0.291 Sum_probs=270.6
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--C--CE-EEEEc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--G--KQ-AMVLA 338 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g--~q-vlVLv 338 (835)
+..++ +++.+.+.++..|||+|.+|||.++. ++|++++++||||||.+|++|++..+.. . .+ +||++
T Consensus 34 l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~-------g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~ 106 (513)
T COG0513 34 LGLSPELLQALKDLGFEEPTPIQLAAIPLILA-------GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILA 106 (513)
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEEC
Confidence 34455 88999998888999999999999985 4899999999999999999999988762 2 12 99999
Q ss_pred ccHHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEec
Q 003268 339 PTIVLAKQHFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 339 Ptr~La~Q~~~~~~~~f~~~~-gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIID 412 (835)
|||+||.|+++.+.. ++.+. ++++..++|+.+...+. ..+..| ++||||||++|.+ .+.+.++.++|+|
T Consensus 107 PTRELA~Qi~~~~~~-~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 107 PTRELAVQIAEELRK-LGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred CCHHHHHHHHHHHHH-HHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 999999999999986 77765 68999999998877654 555566 9999999999875 3567888999999
Q ss_pred ccccc---chh-h-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc----cceeEEecccCHHH-HH
Q 003268 413 EEQRF---GVK-Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER----LPIKTHLSAFSKEK-VI 482 (835)
Q Consensus 413 EaHr~---g~~-~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r----~~V~~~~~~~~~~~-~~ 482 (835)
|||+| |+. . ...+...+.+.|++++|||++.....++...+.++..+...+... ..+..++....... ..
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~ 261 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKL 261 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHH
Confidence 99996 552 2 334455566899999999998887788888888887776653332 33555554444322 55
Q ss_pred HHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 483 SAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 483 ~~i~~~l~~--ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
..+...+.. ..+++|||+++..++.++..|... |+.+..+||+|++.+|+++++.|++|+.+|||||+++++||||
T Consensus 262 ~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~--g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi 339 (513)
T COG0513 262 ELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR--GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDI 339 (513)
T ss_pred HHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCc
Confidence 555555542 357999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecC
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~ 601 (835)
|++++||+||.|. +.+.|+||+||+||+|+.|.++.|+++
T Consensus 340 ~~v~~VinyD~p~-~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 340 PDVSHVINYDLPL-DPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred cccceeEEccCCC-CHHHheeccCccccCCCCCeEEEEeCc
Confidence 9999999999996 999999999999999999999999986
No 11
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-45 Score=390.31 Aligned_cols=324 Identities=20% Similarity=0.200 Sum_probs=267.9
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC---CEEEEEcc
Q 003268 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAP 339 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g---~qvlVLvP 339 (835)
.....+ +.++....+...||++|.+|||.++. ++|+|..+.||||||.+|++|++..+... ..++||+|
T Consensus 65 dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~-------g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 65 DLGVHPELLEACQELGWKKPTKIQSEAIPVALG-------GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hcCcCHHHHHHHHHhCcCCCchhhhhhcchhhC-------CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 345556 88999998888999999999999975 68999999999999999999999887553 58999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------cccccccEEEecc
Q 003268 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDE 413 (835)
Q Consensus 340 tr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~l~lVIIDE 413 (835)
||+||.|+.+.|.. ++...|++|.++.|+.+...+..++ . .+++|+|+||++|.+. +.++.+.++|+||
T Consensus 138 tRELA~QI~e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L---~-kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 138 TRELAQQIAEQFEA-LGSGIGLRVAVLVGGMDMMLQANQL---S-KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred cHHHHHHHHHHHHH-hccccCeEEEEEecCchHHHHHHHh---h-cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 99999999999986 7666699999999998876654433 2 4699999999999764 4568899999999
Q ss_pred ccccc-----hhhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCcc--c-eeEEec--ccCHHHHHH
Q 003268 414 EQRFG-----VKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--P-IKTHLS--AFSKEKVIS 483 (835)
Q Consensus 414 aHr~g-----~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~--~-V~~~~~--~~~~~~~~~ 483 (835)
||++. ......|+.++...+.+++|||++..+..+....+.++..+.++...+. . .++++. ...++..+-
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99953 3334556777889999999999988887777666777666655432211 1 122222 222333444
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc
Q 003268 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v 563 (835)
.|.++. .|..++|||++..+++.++-.|..+ |+.+..+||+|++..|.-.++.|++|.++||||||++++|+|+|.|
T Consensus 293 ~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~l--g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~V 369 (476)
T KOG0330|consen 293 YLLNEL-AGNSVIVFCNTCNTTRFLALLLRNL--GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHV 369 (476)
T ss_pred HHHHhh-cCCcEEEEEeccchHHHHHHHHHhc--CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCc
Confidence 444443 3589999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++|||||.|. +..+|+||+||+||+|+.|.++.|++..+
T Consensus 370 d~VVNyDiP~-~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 370 DVVVNYDIPT-HSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred eEEEecCCCC-cHHHHHHHcccccccCCCcceEEEEehhh
Confidence 9999999997 88999999999999999999999998743
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-45 Score=414.12 Aligned_cols=324 Identities=20% Similarity=0.243 Sum_probs=257.7
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh----------CCC
Q 003268 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGK 332 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~----------~g~ 332 (835)
.++.++ +.+.+.+.+...|||+|.+||+.++. ++|++++||||||||++|++|++..+. .+.
T Consensus 12 ~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~-------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~ 84 (423)
T PRK04837 12 DFALHPQVVEALEKKGFHNCTPIQALALPLTLA-------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQP 84 (423)
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCc
Confidence 355666 88888888888999999999999874 579999999999999999999987653 246
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----cccccccc
Q 003268 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLG 407 (835)
Q Consensus 333 qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~ 407 (835)
+++||+||++||.|+++.+.. +....++++..++|+.+..... ..+.. .++|+||||+.|.+ .+.+++++
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~-l~~~~~~~v~~~~gg~~~~~~~---~~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEP-LAQATGLKLGLAYGGDGYDKQL---KVLES-GVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCccccccc
Confidence 899999999999999999886 5555589999999987665533 33443 48999999998854 45678999
Q ss_pred EEEeccccccc---h-hhHHH-HHhhc--CCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cceeEEecccCH
Q 003268 408 LLVVDEEQRFG---V-KQKEK-IASFK--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSK 478 (835)
Q Consensus 408 lVIIDEaHr~g---~-~~~e~-l~~~~--~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~~~ 478 (835)
+|||||||++. + ..... +..+. ...+.+++|||++..........+.++..+...+... ..+...+...+.
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~ 239 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN 239 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH
Confidence 99999999863 2 12222 33333 2455789999998877777666677766665443322 123222222233
Q ss_pred HHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCcc
Q 003268 479 EKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556 (835)
Q Consensus 479 ~~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~ 556 (835)
......+...+. ...+++|||+++..++.+++.|... ++.+..+||+|++.+|..++++|++|+++|||||+++++
T Consensus 240 ~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~r 317 (423)
T PRK04837 240 EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD--GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAAR 317 (423)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC--CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhc
Confidence 333444444443 3579999999999999999999987 899999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
|||+|++++||++|.|. +..+|+||+||+||.|+.|.|++|++++
T Consensus 318 GiDip~v~~VI~~d~P~-s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 318 GLHIPAVTHVFNYDLPD-DCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred CCCccccCEEEEeCCCC-chhheEeccccccCCCCCeeEEEEeCHH
Confidence 99999999999999996 9999999999999999999999998765
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.8e-44 Score=418.31 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=253.4
Q ss_pred Ch-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--------CCCEEEEEc
Q 003268 268 NP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVLA 338 (835)
Q Consensus 268 ~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--------~g~qvlVLv 338 (835)
++ +++.+.+.+...|||+|.+||+.++. ++|+|+++|||||||++|++|++..+. .++++|||+
T Consensus 138 ~~~l~~~l~~~g~~~pt~iQ~~aip~~l~-------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~ 210 (545)
T PTZ00110 138 PDYILKSLKNAGFTEPTPIQVQGWPIALS-------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLA 210 (545)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEEC
Confidence 44 78888888888999999999999874 579999999999999999999886643 257899999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEecc
Q 003268 339 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDE 413 (835)
Q Consensus 339 Ptr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDE 413 (835)
||++||.|+.+.+.. |+...++++..++++.+...+ ...+..+ ++|+|+||++|.+. ..++++.+|||||
T Consensus 211 PTreLa~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~q---~~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 211 PTRELAEQIREQCNK-FGASSKIRNTVAYGGVPKRGQ---IYALRRG-VEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred ChHHHHHHHHHHHHH-HhcccCccEEEEeCCCCHHHH---HHHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 999999999999987 666557888888888776543 3445555 89999999988643 4578899999999
Q ss_pred ccccc---hh--hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCC-cceeeCCCCC---ccceeEEecccC---H-HH
Q 003268 414 EQRFG---VK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRD-ASLISTPPPE---RLPIKTHLSAFS---K-EK 480 (835)
Q Consensus 414 aHr~g---~~--~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d-~s~i~~~p~~---r~~V~~~~~~~~---~-~~ 480 (835)
||++. +. ....+..+++..+++++|||++.....++...+.+ +..+...... ...+...+.... + ..
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~ 365 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK 365 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHH
Confidence 99863 31 23445556788999999999877665555444432 2222221111 112222222221 1 22
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
+...+......++++||||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi 443 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDV 443 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCc
Confidence 23333333336789999999999999999999876 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|++++||++|.|. ++.+|+||+||+||.|+.|.||+|+++++
T Consensus 444 ~~v~~VI~~d~P~-s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 444 KDVKYVINFDFPN-QIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred ccCCEEEEeCCCC-CHHHHHHHhcccccCCCCceEEEEECcch
Confidence 9999999999997 99999999999999999999999998874
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=5.9e-44 Score=410.90 Aligned_cols=324 Identities=22% Similarity=0.255 Sum_probs=259.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---------CCEE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---------GKQA 334 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---------g~qv 334 (835)
++.++ +.+.+.+.++..|||+|.+||+.+++ ++|+|+++|||||||++|++|++..+.. ..++
T Consensus 6 l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-------g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~a 78 (456)
T PRK10590 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLE-------GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRA 78 (456)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceE
Confidence 34555 88889888888999999999999874 5799999999999999999999887643 2379
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEE
Q 003268 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLL 409 (835)
Q Consensus 335 lVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lV 409 (835)
|||+||++||.|+++.+.. +..+.++++..+.|+.+...+.. .+. +.++|+|+||+.|.+ .+.++++++|
T Consensus 79 Lil~PtreLa~Qi~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~IiV~TP~rL~~~~~~~~~~l~~v~~l 153 (456)
T PRK10590 79 LILTPTRELAAQIGENVRD-YSKYLNIRSLVVFGGVSINPQMM---KLR-GGVDVLVATPGRLLDLEHQNAVKLDQVEIL 153 (456)
T ss_pred EEEeCcHHHHHHHHHHHHH-HhccCCCEEEEEECCcCHHHHHH---HHc-CCCcEEEEChHHHHHHHHcCCcccccceEE
Confidence 9999999999999999987 44555788888888877655332 233 569999999998854 3467899999
Q ss_pred Eeccccccch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEecccCHHHHH
Q 003268 410 VVDEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVI 482 (835)
Q Consensus 410 IIDEaHr~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~~~~~~~~~ 482 (835)
||||||++.. .....+..+....+++++|||+.+....+....+.++..+...... ...+..++...+.....
T Consensus 154 ViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 154 VLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred EeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHH
Confidence 9999998632 2234455566778999999999877666665556665544432211 12233343333433334
Q ss_pred HHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 483 SAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 483 ~~i~~~l~~--ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
+.+...+.. ..+++|||+++..++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi 311 (456)
T PRK10590 234 ELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD--GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI 311 (456)
T ss_pred HHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc
Confidence 444444433 368999999999999999999887 8899999999999999999999999999999999999999999
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|++++||+++.|. +..+|+||+||+||.|..|.|++|+..++
T Consensus 312 p~v~~VI~~~~P~-~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 312 EELPHVVNYELPN-VPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred ccCCEEEEeCCCC-CHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 9999999999997 89999999999999999999999987654
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.3e-43 Score=411.50 Aligned_cols=323 Identities=23% Similarity=0.277 Sum_probs=252.9
Q ss_pred CCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh----------CCCEEE
Q 003268 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGKQAM 335 (835)
Q Consensus 267 ~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~----------~g~qvl 335 (835)
.++ +++.+...++..|||+|.+||+.++. ++|+++++|||||||++|++|++..+. .+.+++
T Consensus 128 l~~~l~~~L~~~g~~~ptpiQ~~aip~il~-------g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aL 200 (518)
T PLN00206 128 LPPKLLLNLETAGYEFPTPIQMQAIPAALS-------GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAM 200 (518)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEE
Confidence 345 78888888888999999999999874 579999999999999999999987542 357899
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEE
Q 003268 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLV 410 (835)
Q Consensus 336 VLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVI 410 (835)
||+||++||.|+++.++. +....++++..+.|+.....+ +..+..| ++|+|+||+.|.+ .+.++++++||
T Consensus 201 IL~PTreLa~Qi~~~~~~-l~~~~~~~~~~~~gG~~~~~q---~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~~lV 275 (518)
T PLN00206 201 VLTPTRELCVQVEDQAKV-LGKGLPFKTALVVGGDAMPQQ---LYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVSVLV 275 (518)
T ss_pred EEeCCHHHHHHHHHHHHH-HhCCCCceEEEEECCcchHHH---HHHhcCC-CCEEEECHHHHHHHHHcCCccchheeEEE
Confidence 999999999999999886 554446788888887665443 3445555 8999999998753 35678999999
Q ss_pred eccccccc---hh-hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCcc--ceeEEecccCH----HH
Q 003268 411 VDEEQRFG---VK-QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSK----EK 480 (835)
Q Consensus 411 IDEaHr~g---~~-~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~--~V~~~~~~~~~----~~ 480 (835)
|||||++. +. +...+....++.+++++|||+++....++.....++..+........ .+...+..... ..
T Consensus 276 iDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~ 355 (518)
T PLN00206 276 LDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQK 355 (518)
T ss_pred eecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHH
Confidence 99999873 32 22333333467899999999988777776666666666654433221 22222221211 12
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
+.+.+.......++++|||+++..++.+++.|.... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+
T Consensus 356 l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~-g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi 434 (518)
T PLN00206 356 LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT-GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL 434 (518)
T ss_pred HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc-CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc
Confidence 222222222234689999999999999999987532 7889999999999999999999999999999999999999999
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|++++||++|+|. +..+|+||+||+||.|..|.|++|+++++
T Consensus 435 p~v~~VI~~d~P~-s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 435 LRVRQVIIFDMPN-TIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred ccCCEEEEeCCCC-CHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 9999999999997 99999999999999999999999997653
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.4e-43 Score=417.46 Aligned_cols=324 Identities=20% Similarity=0.215 Sum_probs=261.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPt 340 (835)
+..++ +++.+.+.++.+|||+|.+||+.++. ++|+|++||||||||++|++|++..+.. ++++|||+||
T Consensus 11 l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~-------g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PT 83 (629)
T PRK11634 11 LGLKAPILEALNDLGYEKPSPIQAECIPHLLN-------GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPT 83 (629)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCc
Confidence 34455 78888888888999999999999874 4799999999999999999999876643 4699999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++||.|+++.+......++++++..++++.+... ++..+..+ ++|||+||+.|.+ .+.++++++|||||||
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~---q~~~l~~~-~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV---QLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH---HHHHhcCC-CCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999987555556899999999877654 33444444 8999999998864 3567899999999999
Q ss_pred ccc---hh--hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEecccCHHHHHHHHHHH
Q 003268 416 RFG---VK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVISAIKYE 488 (835)
Q Consensus 416 r~g---~~--~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~~~~~~~~~~~i~~~ 488 (835)
++. +. ....+..++...++++||||+++....+...++.++..+.+.... ...+...+.........+++.+.
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~ 239 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHH
Confidence 863 31 223345667788999999999887777776777776665443222 22233332222222333444444
Q ss_pred Hhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEE
Q 003268 489 LDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 489 l~~--ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~V 566 (835)
+.. ..+++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 240 L~~~~~~~~IVF~~tk~~a~~l~~~L~~~--g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERN--GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHhcCCCCEEEEeccHHHHHHHHHHHHhC--CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 433 368999999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 567 Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
|++|.|. +..+|+||+||+||.|+.|.|++|+++.
T Consensus 318 I~~d~P~-~~e~yvqRiGRtGRaGr~G~ai~~v~~~ 352 (629)
T PRK11634 318 VNYDIPM-DSESYVHRIGRTGRAGRAGRALLFVENR 352 (629)
T ss_pred EEeCCCC-CHHHHHHHhccccCCCCcceEEEEechH
Confidence 9999996 9999999999999999999999999764
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-43 Score=413.78 Aligned_cols=324 Identities=20% Similarity=0.217 Sum_probs=256.7
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----------CCE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----------GKQ 333 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----------g~q 333 (835)
++.++ +++.+.+.++..|||+|.+||+.++. ++|+++++|||||||++|++|++..+.. +.+
T Consensus 14 l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~-------G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 14 FDLHPALLAGLESAGFTRCTPIQALTLPVALP-------GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 45555 78888888888999999999999874 5799999999999999999999876532 368
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------ccccccc
Q 003268 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLG 407 (835)
Q Consensus 334 vlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~l~ 407 (835)
+|||+||++|+.|+++.+.. |....++++..++|+.+...+...+ . +.++|||+||+.|.+. +.+.+++
T Consensus 87 aLIl~PTreLa~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l---~-~~~dIiV~TP~rL~~~l~~~~~~~l~~v~ 161 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELL---Q-QGVDVIIATPGRLIDYVKQHKVVSLHACE 161 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHH---h-CCCCEEEECHHHHHHHHHhccccchhhee
Confidence 99999999999999999986 5555589999999988776544333 3 3589999999988642 4467889
Q ss_pred EEEeccccccc---h-hhHHH-HHhhcC--CceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEecccCH
Q 003268 408 LLVVDEEQRFG---V-KQKEK-IASFKI--SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK 478 (835)
Q Consensus 408 lVIIDEaHr~g---~-~~~e~-l~~~~~--~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~~~~~ 478 (835)
+|||||+|++. + ...+. +..+.. ..+++++|||+..+...+....+.++..+...... ...+...+.....
T Consensus 162 ~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~ 241 (572)
T PRK04537 162 ICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD 241 (572)
T ss_pred eeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH
Confidence 99999999863 3 12222 333333 67899999999888777766666555433322111 1122333322233
Q ss_pred HHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCcc
Q 003268 479 EKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556 (835)
Q Consensus 479 ~~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~ 556 (835)
......+...+. .+.+++||||++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++
T Consensus 242 ~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~--g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ar 319 (572)
T PRK04537 242 EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH--GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAAR 319 (572)
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhc
Confidence 333344444443 3579999999999999999999987 889999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||+|++++||+||.|. ++.+|+||+||+||.|..|.|++|+.+.+
T Consensus 320 GIDip~V~~VInyd~P~-s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 320 GLHIDGVKYVYNYDLPF-DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred CCCccCCCEEEEcCCCC-CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 99999999999999995 99999999999999999999999987653
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8.3e-43 Score=399.05 Aligned_cols=324 Identities=19% Similarity=0.227 Sum_probs=256.7
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-------CCEEEE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------GKQAMV 336 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-------g~qvlV 336 (835)
+..++ +++.+.+.++..|||+|.+||+.+++ ++|+++++|||+|||++|++|++..+.+ +.+++|
T Consensus 6 l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~-------g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~li 78 (434)
T PRK11192 6 LELDESLLEALQDKGYTRPTAIQAEAIPPALD-------GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILI 78 (434)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEE
Confidence 44555 88889888888999999999999874 4789999999999999999999877632 368999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEe
Q 003268 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVII 411 (835)
++||++||.|+++.+.. +....++++..++|+.....+...+ .+.++|+|+||++|.+ .+.+.++++|||
T Consensus 79 l~Pt~eLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 79 LTPTRELAMQVADQARE-LAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred ECCcHHHHHHHHHHHHH-HHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 99999999999999987 5555589999999988776654333 3468999999998864 345788999999
Q ss_pred ccccccc---hh-h-HHHHHhhcCCceEEEeecCCChhhH-HHHHhcCCCcceeeCCCCCc--cceeEEeccc-CHHHHH
Q 003268 412 DEEQRFG---VK-Q-KEKIASFKISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPER--LPIKTHLSAF-SKEKVI 482 (835)
Q Consensus 412 DEaHr~g---~~-~-~e~l~~~~~~~~vL~lSATp~p~tl-~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~-~~~~~~ 482 (835)
||||++. +. . ...........++++||||+..... .+....+.++..+...+... ..+..++... ......
T Consensus 154 DEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~ 233 (434)
T PRK11192 154 DEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKT 233 (434)
T ss_pred ECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHH
Confidence 9999863 21 1 2223444566789999999975433 33333344554454443322 2233333222 223344
Q ss_pred HHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 483 SAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 483 ~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
..+...+. ..++++|||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~--~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi 311 (434)
T PRK11192 234 ALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA--GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI 311 (434)
T ss_pred HHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC
Confidence 44555444 3579999999999999999999986 8899999999999999999999999999999999999999999
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|++++||++|+|. +...|+||+||+||.|..|.|+++++.++
T Consensus 312 p~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~~g~ai~l~~~~d 353 (434)
T PRK11192 312 DDVSHVINFDMPR-SADTYLHRIGRTGRAGRKGTAISLVEAHD 353 (434)
T ss_pred CCCCEEEEECCCC-CHHHHhhcccccccCCCCceEEEEecHHH
Confidence 9999999999996 99999999999999999999999987553
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-42 Score=399.86 Aligned_cols=324 Identities=20% Similarity=0.214 Sum_probs=255.8
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----------CCE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----------GKQ 333 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----------g~q 333 (835)
+..++ +.+.+.+.+...|||+|.+||+.+++ ++|+|++++||||||++|+++++..+.. +.+
T Consensus 92 ~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~-------G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 92 FNLAPELMHAIHDLGFPYCTPIQAQVLGYTLA-------GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 44555 78888887777999999999999874 5799999999999999999999877643 358
Q ss_pred EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccE
Q 003268 334 AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGL 408 (835)
Q Consensus 334 vlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~l 408 (835)
++||+||++||.|+++.++. +....++++..++|+.+..... +.+..+.++|+|+||++|.+ ...++++++
T Consensus 165 aLil~PtreLa~Q~~~~~~~-l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~ 240 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAA-LTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHH-hhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccCce
Confidence 99999999999999999987 5555578999999887655433 34455678999999998864 345789999
Q ss_pred EEeccccccc---h-hhHHHH-Hhh--cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cceeEEecccCHH
Q 003268 409 LVVDEEQRFG---V-KQKEKI-ASF--KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSKE 479 (835)
Q Consensus 409 VIIDEaHr~g---~-~~~e~l-~~~--~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~~~~ 479 (835)
|||||+|++. + .....+ ... ..+.+++++|||........+.....++..+...+... ..+..++......
T Consensus 241 lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 320 (475)
T PRK01297 241 MVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGS 320 (475)
T ss_pred EEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecch
Confidence 9999999863 2 122223 333 23568999999987777766666666665554433322 1222232222222
Q ss_pred HHHHHHHHHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccC
Q 003268 480 KVISAIKYELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 480 ~~~~~i~~~l~~--ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~G 557 (835)
.....+...+.. ..+++|||++++.++.+++.|... ++.+..+||++++++|.++++.|++|+++|||||+++++|
T Consensus 321 ~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~G 398 (475)
T PRK01297 321 DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD--GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRG 398 (475)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccC
Confidence 233344444433 359999999999999999999887 7899999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||+|++++||+++.|. +..+|+||+||+||.|+.|.|++|++++
T Consensus 399 IDi~~v~~VI~~~~P~-s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 399 IHIDGISHVINFTLPE-DPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred CcccCCCEEEEeCCCC-CHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 9999999999999996 9999999999999999999999999765
No 20
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-41 Score=384.84 Aligned_cols=323 Identities=20% Similarity=0.240 Sum_probs=253.5
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcccH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|||+|.+||+.++. +.|+++++|||||||++|+++++..+. .+.+++|++||+
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~-------~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILD-------GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 4445 66777666666899999999999875 478999999999999999999988765 357899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr 416 (835)
+|+.|+.+.+.. +....++.+..+.|+....+ .+..+..+ ++|+|+||+.|.+ .+.++++++|||||+|+
T Consensus 107 ~L~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~---~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 107 ELAQQIQKVVLA-LGDYLKVRCHACVGGTVVRD---DINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred HHHHHHHHHHHH-HhhhcCceEEEEECCcCHHH---HHHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 999999998886 55555678888888765443 33444544 7999999988753 34678999999999998
Q ss_pred cch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEecccCH-HHHHHHHHHH
Q 003268 417 FGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK-EKVISAIKYE 488 (835)
Q Consensus 417 ~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~~~~~-~~~~~~i~~~ 488 (835)
+.. ...+.+.....+.+++++|||++..........+.++..+...... ...+...+..... ......+...
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHH
Confidence 632 2234456667889999999999877666665666555544332211 1122333322222 2223333333
Q ss_pred Hh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEE
Q 003268 489 LD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 489 l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~V 566 (835)
.. ...+++|||++++.++.+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 262 ~~~~~~~~~ivF~~t~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~V 339 (401)
T PTZ00424 262 YETLTITQAIIYCNTRRKVDYLTKKMHER--DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLV 339 (401)
T ss_pred HHhcCCCeEEEEecCcHHHHHHHHHHHHC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEE
Confidence 32 3468999999999999999999887 7899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 567 Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+++.|. +..+|+||+||+||.|+.|.|+.|+++++
T Consensus 340 I~~~~p~-s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 340 INYDLPA-SPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred EEECCCC-CHHHEeecccccccCCCCceEEEEEcHHH
Confidence 9999996 99999999999999999999999997653
No 21
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-43 Score=380.06 Aligned_cols=318 Identities=22% Similarity=0.265 Sum_probs=263.2
Q ss_pred hHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC------CCEEEEEcccHH
Q 003268 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTIV 342 (835)
Q Consensus 269 ~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~------g~qvlVLvPtr~ 342 (835)
++++.+...++..|||+|..+||-.+- ++|++.|+.||||||.+|++|++..+.- .-+||||+|||+
T Consensus 191 PlLka~~~lGy~~PTpIQ~a~IPvall-------gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRE 263 (691)
T KOG0338|consen 191 PLLKACSTLGYKKPTPIQVATIPVALL-------GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRE 263 (691)
T ss_pred HHHHHHHhcCCCCCCchhhhcccHHhh-------cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHH
Confidence 488899888888999999999997653 5899999999999999999999987643 248999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------cccccccEEEeccccc
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQR 416 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~l~lVIIDEaHr 416 (835)
||.|++...++ ++.|..+.|++..|+.+...++..++ + .+||||+||++|.++ +.+.++.++|+|||+|
T Consensus 264 LaiQv~sV~~q-laqFt~I~~~L~vGGL~lk~QE~~LR---s-~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 264 LAIQVHSVTKQ-LAQFTDITVGLAVGGLDLKAQEAVLR---S-RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred HHHHHHHHHHH-HHhhccceeeeeecCccHHHHHHHHh---h-CCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999987 78888899999999999988776654 3 499999999998653 4578999999999999
Q ss_pred c---ch--hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCcccee---EEec-----ccCHHHHHH
Q 003268 417 F---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIK---THLS-----AFSKEKVIS 483 (835)
Q Consensus 417 ~---g~--~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~---~~~~-----~~~~~~~~~ 483 (835)
| || ...+.+...+.+.|.++||||+......++...+..+.-|.+.|....+.. .++. +-..+.++.
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~ 418 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLA 418 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHH
Confidence 7 34 345667777889999999999988887777777777776666555443211 1111 111223333
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc
Q 003268 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v 563 (835)
.+...+- ...++||+.+.+.+.++.-.|--+ |+++.-+||.+++.+|-..++.|++++++|||||+++++|+||++|
T Consensus 419 ~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLl--gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 419 SLITRTF-QDRTIVFVRTKKQAHRLRILLGLL--GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHhc-ccceEEEEehHHHHHHHHHHHHHh--hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 3322222 467999999999998887666555 8899999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
.+||||++|. +...|+||+||+.|+|+.|+++.|+.+.
T Consensus 496 ~tVINy~mP~-t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 496 QTVINYAMPK-TIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred eEEEeccCch-hHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 9999999998 9999999999999999999999999766
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-42 Score=371.01 Aligned_cols=327 Identities=21% Similarity=0.301 Sum_probs=274.4
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC------CC--EEE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GK--QAM 335 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~------g~--qvl 335 (835)
.|+.+ +...+..+++-..||.|..+||.++. ++|+++.++||||||++|++|++..+.+ .. -++
T Consensus 11 ~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~-------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 11 PPLSPWLLEALDESGFEKMTPVQAATIPLLLK-------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred CCccHHHHHHHHhcCCcccCHHHHhhhHHHhc-------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 34446 66778888777999999999999975 5899999999999999999999988732 12 579
Q ss_pred EEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-------ccccccccE
Q 003268 336 VLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGL 408 (835)
Q Consensus 336 VLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-------~l~~~~l~l 408 (835)
|++|||+||.|+.+........++.+++.++.|+.+..+ .+..+++..++|+||||++|.+ .+.++++.+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~ 160 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEI 160 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccce
Confidence 999999999999999887666667899999999976554 5566666779999999999965 245679999
Q ss_pred EEecccccc---chh--hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cc--eeEEecccCHH
Q 003268 409 LVVDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LP--IKTHLSAFSKE 479 (835)
Q Consensus 409 VIIDEaHr~---g~~--~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~--V~~~~~~~~~~ 479 (835)
+|+||||++ |+. ....|..++...++=++|||.......+...|++++..+....... .| +..++....++
T Consensus 161 LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~ 240 (567)
T KOG0345|consen 161 LVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD 240 (567)
T ss_pred EEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH
Confidence 999999984 663 2455677788888889999998888889999999998776654433 33 45555555555
Q ss_pred HHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccC
Q 003268 480 KVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 480 ~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~G 557 (835)
.....+...+. ...+++||+++-..++..+..+....+...+..+||+|++.+|..++..|.+..-.+|+|||++++|
T Consensus 241 eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 241 EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 55555555443 3478999999999999999999988888999999999999999999999999888999999999999
Q ss_pred CCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||||+++.||.+|+|. +.+.+.||+||+||.|+.|.|++|..+.
T Consensus 321 lDip~iD~VvQ~DpP~-~~~~FvHR~GRTaR~gr~G~Aivfl~p~ 364 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPK-DPSSFVHRCGRTARAGREGNAIVFLNPR 364 (567)
T ss_pred CCCCCceEEEecCCCC-ChhHHHhhcchhhhccCccceEEEeccc
Confidence 9999999999999998 8999999999999999999999998764
No 23
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.2e-41 Score=390.97 Aligned_cols=310 Identities=19% Similarity=0.251 Sum_probs=247.1
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 274 FAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 274 ~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+++.|.| .++|.|.+||+.+++ ++|+++++|||+|||++|++|++. .+..++|++||++|+.|+++.+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~-------g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLL-------GRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHH
Confidence 4455666 999999999999975 469999999999999999999874 36789999999999999999887
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc-------ccccccEEEeccccccc---hh--
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-------VYNNLGLLVVDEEQRFG---VK-- 420 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l-------~~~~l~lVIIDEaHr~g---~~-- 420 (835)
. + |+.+..+.+..+..++...+..+..|.++|+++||+.+.... ...++++|||||||+++ ..
T Consensus 73 ~-~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr 147 (470)
T TIGR00614 73 A-S----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFR 147 (470)
T ss_pred H-c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccH
Confidence 5 2 688899999888888888888888999999999999875422 45788999999999863 21
Q ss_pred ----hHHHHHhhcCCceEEEeecCCChhhHHHHHh--cCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHh---c
Q 003268 421 ----QKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELD---R 491 (835)
Q Consensus 421 ----~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~--~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~---~ 491 (835)
....+....++.+++++|||+.+........ ++.++.++... ..+..+...+..... .....+...+. .
T Consensus 148 ~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~r~nl~~~v~~~~~-~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 148 PDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FDRPNLYYEVRRKTP-KILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CCCCCcEEEEEeCCc-cHHHHHHHHHHHhcC
Confidence 1223444557889999999998876544332 33444433322 223333333322221 12223333332 4
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~ 571 (835)
+..++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|.+|+++|||||+++++|||+|++++||++++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~--g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~ 303 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL--GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSL 303 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc--CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCC
Confidence 456699999999999999999987 889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 572 p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|. ++..|+||+||+||.|..|.|++|+++.+
T Consensus 304 P~-s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 304 PK-SMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred CC-CHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 97 99999999999999999999999998764
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.2e-40 Score=399.14 Aligned_cols=320 Identities=17% Similarity=0.209 Sum_probs=243.6
Q ss_pred CCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHH
Q 003268 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVL 343 (835)
Q Consensus 267 ~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~L 343 (835)
.++ +.+.+.+.+...|||+|.+||+.+++ ++|+++++|||||||++|++|++..+.+ +.++|||+||++|
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~-------G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraL 93 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHA-------GRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKAL 93 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHC-------CCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHH
Confidence 344 77888887777999999999999864 5799999999999999999999987744 4699999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc---------ccccccEEEeccc
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV---------VYNNLGLLVVDEE 414 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l---------~~~~l~lVIIDEa 414 (835)
|.|++++++. +. ..++++..++|..+..++. .+.. .++|+|+||++|...+ .++++++|||||+
T Consensus 94 a~q~~~~l~~-l~-~~~i~v~~~~Gdt~~~~r~----~i~~-~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 94 AADQLRAVRE-LT-LRGVRPATYDGDTPTEERR----WARE-HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred HHHHHHHHHH-hc-cCCeEEEEEeCCCCHHHHH----HHhc-CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 9999999987 55 3478999999987755442 2333 3899999999885321 2689999999999
Q ss_pred ccc----chhhH---HHHHh----hcCCceEEEeecCCChhhHHHHHhcCCCc-ceeeCCCCCccceeEEe-ccc-----
Q 003268 415 QRF----GVKQK---EKIAS----FKISVDVLTLSATPIPRTLYLALTGFRDA-SLISTPPPERLPIKTHL-SAF----- 476 (835)
Q Consensus 415 Hr~----g~~~~---e~l~~----~~~~~~vL~lSATp~p~tl~~~~~~~~d~-s~i~~~p~~r~~V~~~~-~~~----- 476 (835)
|++ |.... +.+.+ +..+.|++++|||....... +...+..+ .++.............+ ...
T Consensus 167 h~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~-~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 167 HSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAA-ASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred hhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHH-HHHHcCCCeEEECCCCCCcCceEEEEecCCccccc
Confidence 986 22211 22222 24568999999998654432 22222222 22211111111111110 000
Q ss_pred ----------CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC------CCcEEEEcCCCCHHHHHHHHHHh
Q 003268 477 ----------SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP------GVDIAIAHGQQYSRQLEETMEKF 540 (835)
Q Consensus 477 ----------~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p------~~~V~~lHG~m~~~ere~vl~~F 540 (835)
........+...+..+.+++||||+++.++.++..|++.+. +.++..+||++++++|.+++++|
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 01233445556666789999999999999999999876531 35788999999999999999999
Q ss_pred hcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 541 AQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 541 ~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++|++++||||+++++|||||++++||+++.|. +.++|+||+||+||.|+.|.++++.+++
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~-s~~~y~qRiGRaGR~G~~g~ai~v~~~~ 386 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPG-TRASLWQQAGRAGRRGQGALVVLVARDD 386 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCC-CHHHHHHhccccCCCCCCcEEEEEeCCC
Confidence 999999999999999999999999999999997 9999999999999999999999998654
No 25
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3e-40 Score=397.11 Aligned_cols=320 Identities=17% Similarity=0.169 Sum_probs=251.0
Q ss_pred CCCCCh-HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 264 PYPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
.||+.. +...+...|.| .++|.|.+||+.++. ++|+|+++|||+|||++|++|++.. +..++||+|++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~-------GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLi 510 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMS-------GYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLV 510 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHH
Confidence 466665 55667777766 999999999999975 5799999999999999999998754 67899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhc--CCcceEecchHhhhcc------c----ccccccEE
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGSR------V----VYNNLGLL 409 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~--g~~dIIIgT~~~L~~~------l----~~~~l~lV 409 (835)
+|+.++...+... ++.+..++++.+..++...+..+.. |.++|+|+||++|... + ....+++|
T Consensus 511 SLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9999777666542 7899999999998888888887766 8899999999987531 1 12347899
Q ss_pred Eecccccc---chh------hHHHHHhhcCCceEEEeecCCChhhHHHHHh--cCCCcceeeCCCCCccceeEEecccCH
Q 003268 410 VVDEEQRF---GVK------QKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAFSK 478 (835)
Q Consensus 410 IIDEaHr~---g~~------~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~--~~~d~s~i~~~p~~r~~V~~~~~~~~~ 478 (835)
||||||++ |.. ....+....++.+++++|||..+.+...... ++.++.++... ..+..+...+....
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-f~RpNL~y~Vv~k~- 663 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-FNRPNLWYSVVPKT- 663 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-cCccceEEEEeccc-
Confidence 99999985 421 1223455567889999999998876654333 33333333221 22333322222222
Q ss_pred HHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCc
Q 003268 479 EKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE 555 (835)
Q Consensus 479 ~~~~~~i~~~l~---~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie 555 (835)
......+...+. .+...||||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|..|+++|||||++++
T Consensus 664 kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~--Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFG 741 (1195)
T PLN03137 664 KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF--GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFG 741 (1195)
T ss_pred hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC--CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhh
Confidence 122233333332 2457899999999999999999987 89999999999999999999999999999999999999
Q ss_pred cCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 556 SGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 556 ~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+|||+|+|++||++++|. +++.|+|++|||||.|..|.|++||...+
T Consensus 742 MGIDkPDVR~VIHydlPk-SiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 742 MGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred cCCCccCCcEEEEcCCCC-CHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 999999999999999997 99999999999999999999999997543
No 26
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-41 Score=344.03 Aligned_cols=319 Identities=20% Similarity=0.230 Sum_probs=261.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcccHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPtr~La~Q 346 (835)
+++.+-+.++-.|+.+|++||+.|++ ++|++.++..|+|||..|-..++..+. +.-|++||.|||+||.|
T Consensus 38 lLrgiY~yGfekPS~IQqrAi~~Ilk-------GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Q 110 (400)
T KOG0328|consen 38 LLRGIYAYGFEKPSAIQQRAIPQILK-------GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQ 110 (400)
T ss_pred HHHHHHHhccCCchHHHhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHH
Confidence 66777777777999999999999986 689999999999999987666655443 34699999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEeccccccc---
Q 003268 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFG--- 418 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~g--- 418 (835)
+.+.+.. ++.+.++.+....|+.+..+. ++.+.-| .++|.|||+++.+. +..+.+.++|+||++.+.
T Consensus 111 i~~vi~a-lg~~mnvq~hacigg~n~ged---ikkld~G-~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 111 IQKVILA-LGDYMNVQCHACIGGKNLGED---IKKLDYG-QHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHH-hcccccceEEEEecCCccchh---hhhhccc-ceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh
Confidence 9999987 888889999999998876653 3444456 89999999988764 445678899999999873
Q ss_pred hh--hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc-c-ceeEEecccCHHH-HHHHHHHHHhc--
Q 003268 419 VK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-L-PIKTHLSAFSKEK-VISAIKYELDR-- 491 (835)
Q Consensus 419 ~~--~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r-~-~V~~~~~~~~~~~-~~~~i~~~l~~-- 491 (835)
++ .....+.++++.|++++|||.+...+.+...++.|+.-+...+.+. . .++.++.....+. ..+.+...-+.
T Consensus 186 fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~Lt 265 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLT 265 (400)
T ss_pred HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhe
Confidence 32 2344566778999999999999999999998888887665543221 1 1444444444333 23333333222
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~ 571 (835)
-.|.++|||++..++.+.+.+++. ++.|..+||+|++++|+++|.+|++|+.+||++|++-++|+|+|.|++|||||.
T Consensus 266 ItQavIFcnTk~kVdwLtekm~~~--nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDL 343 (400)
T KOG0328|consen 266 ITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDL 343 (400)
T ss_pred hheEEEEecccchhhHHHHHHHhh--CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCC
Confidence 269999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 572 p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|. +.+.|+||+||.||.|+.|.|+-|+..++
T Consensus 344 P~-nre~YIHRIGRSGRFGRkGvainFVk~~d 374 (400)
T KOG0328|consen 344 PN-NRELYIHRIGRSGRFGRKGVAINFVKSDD 374 (400)
T ss_pred Cc-cHHHHhhhhccccccCCcceEEEEecHHH
Confidence 97 88999999999999999999999997654
No 27
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-39 Score=386.93 Aligned_cols=318 Identities=20% Similarity=0.245 Sum_probs=250.0
Q ss_pred CCCCh-HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 265 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
++.++ ....+.+.|.| .++|.|.+||+.++. ++|+++++|||+|||++|++|++.. +..++|++|+++
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~-------g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~s 76 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLS-------GRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLIS 76 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHH
Confidence 34444 45667777877 799999999999874 5799999999999999999998743 567999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccccc
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~ 417 (835)
|+.|+.+.++.. |+.+..+.+..+..+....+..+..|.++++++||+.+.. .+...++++|||||||++
T Consensus 77 L~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 77 LMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 999999998763 6888888888888777777888889999999999998763 233457899999999985
Q ss_pred c---h------hhHHHHHhhcCCceEEEeecCCChhhHHHHH--hcCCCcceeeCCCCCccceeEEeccc--CHHHHHHH
Q 003268 418 G---V------KQKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPPPERLPIKTHLSAF--SKEKVISA 484 (835)
Q Consensus 418 g---~------~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~--~~~~d~s~i~~~p~~r~~V~~~~~~~--~~~~~~~~ 484 (835)
. . .....+....++.+++++|||+.+.+..... .++.++.+.. ....+..+...+... ....+...
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r~nl~~~v~~~~~~~~~l~~~ 230 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPNIRYTLVEKFKPLDQLMRY 230 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCCCcceeeeeeccchHHHHHHH
Confidence 3 1 2233344555788999999999876644322 2333433322 222222222222111 11222222
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC
Q 003268 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 485 i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
+.. ..+.+++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|.+|+++|||||+++++|||+|+++
T Consensus 231 l~~--~~~~~~IIFc~tr~~~e~la~~L~~~--g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 231 VQE--QRGKSGIIYCNSRAKVEDTAARLQSR--GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHh--cCCCCEEEEECcHHHHHHHHHHHHhC--CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 221 35678999999999999999999988 89999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 565 ~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+||+++.|. ++++|+|++|||||.|..|.|++|+++.+
T Consensus 307 ~VI~~d~P~-s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 307 FVVHFDIPR-NIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred EEEEeCCCC-CHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 999999997 99999999999999999999999998764
No 28
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=348.09 Aligned_cols=335 Identities=21% Similarity=0.244 Sum_probs=259.3
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcc
Q 003268 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAP 339 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvP 339 (835)
.++..+ +.+.+.+.+.+.|||+|..|||.|++ |+|+|.||.||||||.+|.+|++..++. |--++|+.|
T Consensus 11 ~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe-------Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKALGIKKPTPIQQACIPKILE-------GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred hcCccHHHHHHHHHhcCCCCCchHhhhhHHHhc-------ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 346677 45778888899999999999999986 6899999999999999999999998875 457899999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc---------cccccccEEE
Q 003268 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------VVYNNLGLLV 410 (835)
Q Consensus 340 tr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~---------l~~~~l~lVI 410 (835)
||+||.|+.+.|.. ++...++++.+++|+.+.-.+...+ ..++++||+||++|.+. ..|.++.++|
T Consensus 84 TrELA~QiaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 84 TRELALQIAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred hHHHHHHHHHHHHH-hcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 99999999999986 7777789999999998766544333 35699999999998643 2367899999
Q ss_pred eccccccch----hhHHH-HHhhcCCceEEEeecCCChhhHHHHHhcCCC--cceeeCCCCCccc--e-eEEe--cccCH
Q 003268 411 VDEEQRFGV----KQKEK-IASFKISVDVLTLSATPIPRTLYLALTGFRD--ASLISTPPPERLP--I-KTHL--SAFSK 478 (835)
Q Consensus 411 IDEaHr~g~----~~~e~-l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d--~s~i~~~p~~r~~--V-~~~~--~~~~~ 478 (835)
+|||+++.. .+.+. ...++...|.++||||............... +-.....+....+ . +.++ .....
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk 238 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK 238 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh
Confidence 999999733 22232 3344566799999999754433322222221 1112221111110 0 0111 11122
Q ss_pred HHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCcc
Q 003268 479 EKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556 (835)
Q Consensus 479 ~~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~ 556 (835)
+.+.-.+.+... ..+.+++|+|+..+|+.++..|+.+ ++++..+|+.|++.+|-..+.+|+++..+|||||+++++
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l--e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL--EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASR 316 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh--ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhc
Confidence 333333333333 3689999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003268 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
|+|||.|..|||+|.|+ .+..|+||.||+.|+|+.|.++.++++.+ .+.+.+|++.
T Consensus 317 GLDIP~V~LVvN~diPr-~P~~yiHRvGRtARAGR~G~aiSivt~rD------v~l~~aiE~~ 372 (442)
T KOG0340|consen 317 GLDIPTVELVVNHDIPR-DPKDYIHRVGRTARAGRKGMAISIVTQRD------VELLQAIEEE 372 (442)
T ss_pred CCCCCceeEEEecCCCC-CHHHHHHhhcchhcccCCcceEEEechhh------HHHHHHHHHH
Confidence 99999999999999998 99999999999999999999999997554 4567777654
No 29
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-39 Score=358.15 Aligned_cols=346 Identities=21% Similarity=0.259 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHHHH---hcCCCCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHH
Q 003268 244 QKMVVDLMELYLHRL---KQKRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV 319 (835)
Q Consensus 244 ~~~~~~l~~l~~~r~---~~~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~v 319 (835)
++...++..-|+.-. ..+...+|.+. ..+.+.++.+-.+|.+|+++|+..+. |.|+|..+.||||||++
T Consensus 50 ee~i~~l~~ky~ei~~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~-------G~DvlGAAkTGSGKTLA 122 (758)
T KOG0343|consen 50 EEEIEELKQKYAEIDSTTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQ-------GHDVLGAAKTGSGKTLA 122 (758)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhcc-------CcccccccccCCCceee
Confidence 334444555444322 22345677776 88899999999999999999998874 68999999999999999
Q ss_pred HHHHHHHHHh-------CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEec
Q 003268 320 ALRAIFCVVS-------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392 (835)
Q Consensus 320 al~a~~~~~~-------~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIg 392 (835)
|+.|++..+- +|.-+||+.|||+||.|+++.+.. .+.+.++..+++.|+.+.......+ ..++|+||
T Consensus 123 FlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k-vgk~h~fSaGLiiGG~~~k~E~eRi-----~~mNILVC 196 (758)
T KOG0343|consen 123 FLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK-VGKHHDFSAGLIIGGKDVKFELERI-----SQMNILVC 196 (758)
T ss_pred ehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH-HhhccccccceeecCchhHHHHHhh-----hcCCeEEe
Confidence 9999998764 367899999999999999999986 8888889999999998765433222 45899999
Q ss_pred chHhhhcc------cccccccEEEecccccc---chh-h-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeC
Q 003268 393 THSLLGSR------VVYNNLGLLVVDEEQRF---GVK-Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 393 T~~~L~~~------l~~~~l~lVIIDEaHr~---g~~-~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~ 461 (835)
||++|..+ +.-.++.++|+|||+|+ ||. + ...+..+++..|+|+||||+...+..++...+.|+..|.+
T Consensus 197 TPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsv 276 (758)
T KOG0343|consen 197 TPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSV 276 (758)
T ss_pred chHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEE
Confidence 99999753 23468899999999994 663 2 3446677889999999999988888888888888887765
Q ss_pred CCCCc--c--ceeEEecccCHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHH
Q 003268 462 PPPER--L--PIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEE 535 (835)
Q Consensus 462 ~p~~r--~--~V~~~~~~~~~~~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~ 535 (835)
..... . ...+++........++.+-..+. ...+.+||+.+.+.+..+++.+..+-||..+..+||+|++..|-.
T Consensus 277 he~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 277 HENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred eccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 42211 1 12333333333333444433332 236889999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 536 TMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 536 vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++.+|....--||+||+++++|+|+|.|+.||.+|+|. +.++|+||+||+.|.+..|.|+++.++.+
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe-dv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE-DVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch-hHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 99999999999999999999999999999999999997 99999999999999999999999998763
No 30
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.8e-40 Score=400.96 Aligned_cols=388 Identities=17% Similarity=0.215 Sum_probs=282.0
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g 368 (835)
+.++|++.+.+ +.+++++|+||||||+++.++++.....+.+++|++|||++|.|+++++.+.++...|..|++..+
T Consensus 9 ~~~~i~~~l~~---~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKT---APQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHh---CCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 44556655532 468999999999999999998887654456999999999999999999987787766889999988
Q ss_pred CCCHHHHHHHHHhHhcCCcceEecchHhhhc----ccccccccEEEeccccccchh------h-HHHHHhhcCCceEEEe
Q 003268 369 FQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVK------Q-KEKIASFKISVDVLTL 437 (835)
Q Consensus 369 ~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~g~~------~-~e~l~~~~~~~~vL~l 437 (835)
+.+... ...+|+|+|++.|.+ +..+.++++||+||+|+.+.. . .+.+..++.+.++|+|
T Consensus 86 ~~~~~~----------~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 86 AESKVG----------PNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred CccccC----------CCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 754322 236899999998764 456899999999999985322 1 2233445778999999
Q ss_pred ecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHH-----HHHHHHHHHh-cCCeEEEEecCccChHHHHHH
Q 003268 438 SATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEK-----VISAIKYELD-RGGQVFYVLPRIKGLEEPMDF 511 (835)
Q Consensus 438 SATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~-----~~~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~ 511 (835)
|||+....+ ..++.+..++..+ ...+++..++....... +...+...+. .+++++||+|+..+++.+++.
T Consensus 156 SATl~~~~l---~~~~~~~~~I~~~-gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 156 SATLDNDRL---QQLLPDAPVIVSE-GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred ecCCCHHHH---HHhcCCCCEEEec-CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 999976533 3344556666543 33467776654433221 1223444443 368999999999999999999
Q ss_pred HHhhC-CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC---C-------------
Q 003268 512 LQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ---F------------- 574 (835)
Q Consensus 512 L~~~~-p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~---~------------- 574 (835)
|.+.. .++.+..+||+|++.+|++++..|.+|+.+|||||+++|+|||||+|++||+++.++ |
T Consensus 232 L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred HHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 99743 478899999999999999999999999999999999999999999999999977653 1
Q ss_pred -CHhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccc
Q 003268 575 -GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNV 653 (835)
Q Consensus 575 -sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~v 653 (835)
|.+++.||+|||||. .+|.||.+|++.+... ......++|.+.+. +++.+..+.+ |..+......-..+...
T Consensus 312 iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~-l~~~~~PEI~r~dL--~~~~L~l~~~---g~~~~~~~~~ld~P~~~ 384 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYSKEQAER-AAAQSEPEILHSDL--SGLLLELLQW---GCHDPAQLSWLDQPPAA 384 (812)
T ss_pred echhhhhhhccccCCC-CCcEEEEecCHHHHhh-CccCCCCceeccch--HHHHHHHHHc---CCCCHHhCCCCCCCCHH
Confidence 346899999999998 6999999998764422 22233344544433 3455544443 44444333444444444
Q ss_pred hHHHHHHHHHHHHHhhcCcccccccCcceEEeeecCCCCccccccccCC
Q 003268 654 GVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 654 g~~~y~~~L~~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
.++.-.+.|. .+..++.+. ..|+.|..|+.||+||.+++.++.+.+.
T Consensus 385 ~~~~A~~~L~-~lgald~~g-~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 385 ALAAAKRLLQ-QLGALDGQG-RLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred HHHHHHHHHH-HCCCCCCCC-CcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 4444444443 444555443 3478999999999999999999987553
No 31
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.7e-40 Score=396.75 Aligned_cols=385 Identities=18% Similarity=0.233 Sum_probs=279.0
Q ss_pred HHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCC
Q 003268 291 LDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQ 370 (835)
Q Consensus 291 ~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~ 370 (835)
+.|++.+.+ +.++|++|+||||||+++..+++.....+.+++|++|||++|.|+++++.+.++...|..|++..++.
T Consensus 8 ~~i~~~l~~---~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 8 PALRDALAA---HPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHc---CCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 444444422 46899999999999999999998776667799999999999999999998778766678899888875
Q ss_pred CHHHHHHHHHhHhcCCcceEecchHhhhc----ccccccccEEEecccccc------chhhHHH-HHhhcCCceEEEeec
Q 003268 371 SKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEK-IASFKISVDVLTLSA 439 (835)
Q Consensus 371 s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~------g~~~~e~-l~~~~~~~~vL~lSA 439 (835)
+.. +...+|+|+|++.|.+ +..+.++++|||||+|+. +...... ...++.+.++|+|||
T Consensus 85 ~~~----------s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 85 NKV----------SRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred ccc----------CCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 421 1347899999997764 456889999999999962 2222222 334577899999999
Q ss_pred CCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHH-H----HHHHHHHHHh-cCCeEEEEecCccChHHHHHHHH
Q 003268 440 TPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE-K----VISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQ 513 (835)
Q Consensus 440 Tp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~-~----~~~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~L~ 513 (835)
|+....+ ..++.+..++..+ ...++|+.++...... . +...+...+. .+|+++||+|+..+++.+++.|.
T Consensus 155 Tl~~~~l---~~~l~~~~vI~~~-gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~ 230 (819)
T TIGR01970 155 TLDGERL---SSLLPDAPVVESE-GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLA 230 (819)
T ss_pred CCCHHHH---HHHcCCCcEEEec-CcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 9976543 3344566666543 3456777766544322 1 2233333333 36899999999999999999998
Q ss_pred hhC-CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC---C--------------C
Q 003268 514 QAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ---F--------------G 575 (835)
Q Consensus 514 ~~~-p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~---~--------------s 575 (835)
+.+ +++.+.++||+|++++|..+++.|.+|..+|||||+++|+|||||+|++||+++.++ | |
T Consensus 231 ~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 310 (819)
T TIGR01970 231 ERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRIS 310 (819)
T ss_pred hhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEEC
Confidence 754 478999999999999999999999999999999999999999999999999988763 2 3
Q ss_pred HhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchH
Q 003268 576 LAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGV 655 (835)
Q Consensus 576 l~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~ 655 (835)
.+++.||+|||||. ++|.||.+|++++.. .......++|.+... +++.+.++.+ |..+.........+....+
T Consensus 311 kasa~QR~GRAGR~-~~G~cyrL~t~~~~~-~l~~~~~PEI~r~~L--~~~~L~l~~~---g~~~~~~~~~l~~P~~~~i 383 (819)
T TIGR01970 311 QASATQRAGRAGRL-EPGVCYRLWSEEQHQ-RLPAQDEPEILQADL--SGLALELAQW---GAKDPSDLRWLDAPPSVAL 383 (819)
T ss_pred HHHHHhhhhhcCCC-CCCEEEEeCCHHHHH-hhhcCCCcceeccCc--HHHHHHHHHc---CCCChhhCCCCCCcCHHHH
Confidence 45789999999999 799999999876432 122222334443332 3455555444 4444433344444444344
Q ss_pred HHHHHHHHHHHHhhcCcccccccCcceEEeeecCCCCccccccccC
Q 003268 656 DLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 656 ~~y~~~L~~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
..-.+.|. .+..++.+. ..|++|..|+.||+||.+++.++.+..
T Consensus 384 ~~a~~~L~-~lgald~~~-~lT~~G~~~~~lp~~p~l~~~ll~~~~ 427 (819)
T TIGR01970 384 AAARQLLQ-RLGALDAQG-RLTAHGKAMAALGCHPRLAAMLLSAHS 427 (819)
T ss_pred HHHHHHHH-HCCCCCCCC-CcCHHHHHHHhcCCCHHHHHHHHHhhh
Confidence 43344443 344554333 357899999999999999999987643
No 32
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.8e-39 Score=381.36 Aligned_cols=311 Identities=22% Similarity=0.250 Sum_probs=247.7
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHH
Q 003268 272 AEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 272 ~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~ 350 (835)
+.+.+.|+| +++|.|.+||+.++. ++|+++++|||+|||++|++|++. .++.++|++|+++|+.|+++.
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~-------g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD-------GRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHH
Confidence 456677877 799999999999975 479999999999999999988864 356789999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccc---hh--
Q 003268 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFG---VK-- 420 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g---~~-- 420 (835)
++. + |+.+..+++..+..+....+..+..|.++|+++||+.|.. .+...++++|||||||.++ ..
T Consensus 73 l~~-~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 73 LRA-A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred HHH-c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 886 3 6889999999998888888888999999999999998853 2345789999999999863 21
Q ss_pred ----hHHHHHhhcCCceEEEeecCCChhhHHHHHh--cCCCcceeeCCCCCccceeEEeccc-C-HHHHHHHHHHHHhcC
Q 003268 421 ----QKEKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLISTPPPERLPIKTHLSAF-S-KEKVISAIKYELDRG 492 (835)
Q Consensus 421 ----~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~--~~~d~s~i~~~p~~r~~V~~~~~~~-~-~~~~~~~i~~~l~~g 492 (835)
....+....++.+++++|||+.+.+...... ++.++..+.. ...+..+...+... . ...+.+.+.. ..+
T Consensus 148 p~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~l~~~l~~--~~~ 224 (591)
T TIGR01389 148 PEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFIT-SFDRPNLRFSVVKKNNKQKFLLDYLKK--HRG 224 (591)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-CCCCCCcEEEEEeCCCHHHHHHHHHHh--cCC
Confidence 1223333345667999999998877654333 2333333322 22233332222211 1 1223333322 135
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCC
Q 003268 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ 572 (835)
Q Consensus 493 gqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p 572 (835)
.+.+|||++++.++.+++.|... ++.+..+||+|+.++|+.+++.|.+|+++|||||+++++|||+|++++||++++|
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~--g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ--GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC--CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 78999999999999999999887 8899999999999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 573 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 573 ~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
. ++++|+|++||+||.|..|.|+++|++.+
T Consensus 303 ~-s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 303 G-NLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred C-CHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 7 99999999999999999999999987654
No 33
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5.9e-40 Score=358.86 Aligned_cols=324 Identities=22% Similarity=0.285 Sum_probs=263.8
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-------CCEEEE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------GKQAMV 336 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-------g~qvlV 336 (835)
++.++ ...++.+.++-.+|++|..+|+.++. ++|+|+.|-||+|||++|++|+++.+.+ +-.++|
T Consensus 87 ~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~-------gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 87 GSLSPLTLKAIKEMGFETMTPVQQKTIPPLLE-------GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred cccCHHHHHHHHhcCccchhHHHHhhcCccCC-------CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 45566 78899999999999999999999874 4699999999999999999999987643 457999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------cccccccEEE
Q 003268 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLV 410 (835)
Q Consensus 337 LvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~l~lVI 410 (835)
++|||+||.|++.+.++.+...+++.|+++.|+.+..... +.+..| ++|+|+||++|.+. +.++++.++|
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~---~kl~k~-~niliATPGRLlDHlqNt~~f~~r~~k~lv 235 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEA---DKLVKG-CNILIATPGRLLDHLQNTSGFLFRNLKCLV 235 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHH---HHhhcc-ccEEEeCCchHHhHhhcCCcchhhccceeE
Confidence 9999999999999999877766689999999987654332 334454 99999999999764 3468889999
Q ss_pred ecccccc---chh--hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCC-CcceeeCCCCCccc----eeE-EecccCHH
Q 003268 411 VDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFR-DASLISTPPPERLP----IKT-HLSAFSKE 479 (835)
Q Consensus 411 IDEaHr~---g~~--~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~-d~s~i~~~p~~r~~----V~~-~~~~~~~~ 479 (835)
+||||++ ||. ....+..++...|.+++|||.++.+...+...+. ++..+.....+..+ +.+ ++......
T Consensus 236 lDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~ 315 (543)
T KOG0342|consen 236 LDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS 315 (543)
T ss_pred eecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc
Confidence 9999984 663 3455667788999999999999988777665543 45566554333221 222 22222211
Q ss_pred ---HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCcc
Q 003268 480 ---KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556 (835)
Q Consensus 480 ---~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~ 556 (835)
.+...+.+...+ .+++|||++...+..+++.|... ++.|.-+||++++..|..+...|++.+.-||||||++++
T Consensus 316 ~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~--dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaAR 392 (543)
T KOG0342|consen 316 RFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYI--DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAAR 392 (543)
T ss_pred hHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhc--CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhc
Confidence 233344443333 79999999999999999999976 899999999999999999999999999999999999999
Q ss_pred CCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+|+|+|+.||.+|+|. ++.+|+||+||+||.|..|.++++..+.+
T Consensus 393 GlD~P~V~~VvQ~~~P~-d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 393 GLDIPDVDWVVQYDPPS-DPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred cCCCCCceEEEEeCCCC-CHHHHHHHhccccccCCCceEEEEeChhH
Confidence 99999999999999997 99999999999999999999999987764
No 34
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-40 Score=348.33 Aligned_cols=333 Identities=21% Similarity=0.287 Sum_probs=266.9
Q ss_pred hHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---------CCCEEEEEcc
Q 003268 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAP 339 (835)
Q Consensus 269 ~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---------~g~qvlVLvP 339 (835)
++++++.+.++-.|||+|.+|||.+++ +.|++.++.||+|||++||+|.+..+. .+..+|++.|
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQ-------G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~p 302 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQ-------GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTP 302 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeec-------CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEec
Confidence 478888899999999999999999985 589999999999999999998875432 2678999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccc
Q 003268 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 414 (835)
Q Consensus 340 tr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEa 414 (835)
|++||.|+.-+.+.+ . +.|.+..++.|+.+..+ +++.++.| ++|+|+||++|.+ .+.+..+.+||+|||
T Consensus 303 treLalqie~e~~ky-s-yng~ksvc~ygggnR~e---qie~lkrg-veiiiatPgrlndL~~~n~i~l~siTYlVlDEA 376 (629)
T KOG0336|consen 303 TRELALQIEGEVKKY-S-YNGLKSVCVYGGGNRNE---QIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITYLVLDEA 376 (629)
T ss_pred cHHHHHHHHhHHhHh-h-hcCcceEEEecCCCchh---HHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeeeEEEEecch
Confidence 999999998887753 2 33666666666655444 56667767 9999999999864 356788999999999
Q ss_pred ccc---ch--hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCcc---ceeEEecccCHHH---HHH
Q 003268 415 QRF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL---PIKTHLSAFSKEK---VIS 483 (835)
Q Consensus 415 Hr~---g~--~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~---~V~~~~~~~~~~~---~~~ 483 (835)
++| || ..++.+...+++.++++.|||.++.+..++..++.++.++......-. .|.+.+....... +..
T Consensus 377 DrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~ 456 (629)
T KOG0336|consen 377 DRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQ 456 (629)
T ss_pred hhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHH
Confidence 995 55 345667788999999999999999888999999988877665433322 2333332222222 333
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc
Q 003268 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA 563 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v 563 (835)
.....+....++++||.++-.++.+...+.-. |+.+-.+||+-.+.+|+..++.|++|+++|||||+++++|+|+|++
T Consensus 457 ~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~--gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336|consen 457 FFVANMSSNDKVIIFVSRKVMADHLSSDFCLK--GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred HHHHhcCCCceEEEEEechhhhhhccchhhhc--ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhc
Confidence 34444566789999999987777776666544 8889999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003268 564 NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
++|++||.|+ +++.|.||+||+||+|+.|.++.|++..+ ...+.+-++.+++.
T Consensus 535 THV~NyDFP~-nIeeYVHRvGrtGRaGr~G~sis~lt~~D--~~~a~eLI~ILe~a 587 (629)
T KOG0336|consen 535 THVYNYDFPR-NIEEYVHRVGRTGRAGRTGTSISFLTRND--WSMAEELIQILERA 587 (629)
T ss_pred ceeeccCCCc-cHHHHHHHhcccccCCCCcceEEEEehhh--HHHHHHHHHHHHHh
Confidence 9999999998 99999999999999999999999998765 34555555555544
No 35
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-39 Score=393.89 Aligned_cols=411 Identities=21% Similarity=0.255 Sum_probs=276.7
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La 344 (835)
+.++ +.+.+.+.+..+|+|+|.+|++..+. + ++|+++++|||||||++|.++++..+..+++++|++|+++||
T Consensus 7 ~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~---~---g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 7 PLPEGVIEFYEAEGIEELYPPQAEAVEAGLL---D---GKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred CCCHHHHHHHHhCCCCcCCHHHHHHHHHHHh---C---CCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 4445 77788887778999999999987432 2 579999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccch
Q 003268 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g~ 419 (835)
.|+++.|+. |..+ |++|..++|+.+... ..+ +..+|+|+||+.+.. ...+.++++|||||+|.++.
T Consensus 81 ~q~~~~~~~-~~~~-g~~v~~~tGd~~~~~--~~l-----~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 81 SEKFEEFER-FEEL-GVRVGISTGDYDSRD--EWL-----GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred HHHHHHHHH-hhcC-CCEEEEEeCCcCccc--ccc-----CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC
Confidence 999999985 7665 799999998754332 111 458999999987632 12357899999999998753
Q ss_pred hh----H----HHHHhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceeeCCCCCccceeEE---------------ecc
Q 003268 420 KQ----K----EKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTH---------------LSA 475 (835)
Q Consensus 420 ~~----~----e~l~~~~~~~~vL~lSATp~p-~tl~~~~~~~~d~s~i~~~p~~r~~V~~~---------------~~~ 475 (835)
.. . ..++...++.++|++|||+.. ..+.. |.+...+... ....++... +..
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~----wl~~~~~~~~-~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELAD----WLDAELVDSE-WRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHH----HhCCCcccCC-CCCCCCeeeEecCCeeccccccccCCC
Confidence 21 1 223444578999999999743 22222 1121111100 000000000 000
Q ss_pred cCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----------------------------------CCcE
Q 003268 476 FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----------------------------------GVDI 521 (835)
Q Consensus 476 ~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p----------------------------------~~~V 521 (835)
.........+...+..+++++|||++++.++.++..|..... ...|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gv 306 (737)
T PRK02362 227 PSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGA 306 (737)
T ss_pred ccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCE
Confidence 111334555666677889999999999999988887765421 1378
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE----ecC----CCCCHhHHHHHhcccCCCCC--
Q 003268 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDV----QQFGLAQLYQLRGRVGRADK-- 591 (835)
Q Consensus 522 ~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi----~d~----p~~sl~~l~Qr~GRaGR~g~-- 591 (835)
+++||+|++.+|+.+++.|++|.++|||||+++++|||+|..++||. ||. ..++..+|.||+|||||.|.
T Consensus 307 a~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~ 386 (737)
T PRK02362 307 AFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDP 386 (737)
T ss_pred EeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999998877775 442 23578999999999999985
Q ss_pred ceEEEEEecCCCcCCHHHHHHHH--------------HHHHH--hhcccchhhhhhhhccccCCCcccccccCCcccchH
Q 003268 592 EAHAYLFYPDKSLLSDQALERLA--------------ALEEC--RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGV 655 (835)
Q Consensus 592 ~G~ay~l~~~~~~~~~~a~~rl~--------------~i~~~--~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~ 655 (835)
.|.|++++...+...+...+-+. .+..+ ..+..|......|+ +.-..+.|...|.+. -
T Consensus 387 ~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~-~~~l~~Tf~~~~~~~-----~ 460 (737)
T PRK02362 387 YGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGL-LEFLEATFYATQTDD-----T 460 (737)
T ss_pred CceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHH-HHHHHhChHHhhccc-----h
Confidence 49999998764211111111110 00000 11111111111111 000112232233211 1
Q ss_pred HHHHHHHHHHHHhhcC--------cccccccCcceEEeeecCCCCccccccccCC
Q 003268 656 DLFFEMLFESLSKVDE--------HCVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 656 ~~y~~~L~~ai~~l~~--------~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
+.+.++++.++..+.. +.+.+|++|..++..|++|.....++.+.+.
T Consensus 461 ~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 515 (737)
T PRK02362 461 GRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEA 515 (737)
T ss_pred HHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhh
Confidence 2344566666665542 2344688999999999999999888876554
No 36
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=360.51 Aligned_cols=318 Identities=25% Similarity=0.337 Sum_probs=250.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-------------CCEEEE
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------------GKQAMV 336 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-------------g~qvlV 336 (835)
+...+....+-.|||+|+.+|+.|.. ++|+++||+||||||.+|++|++..+.. .++++|
T Consensus 85 l~~ni~~~~~~~ptpvQk~sip~i~~-------Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lI 157 (482)
T KOG0335|consen 85 LAGNIKRSGYTKPTPVQKYSIPIISG-------GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALI 157 (482)
T ss_pred HhhccccccccCCCcceeeccceeec-------CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEE
Confidence 44455566677999999999999853 6899999999999999999999976532 268999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEe
Q 003268 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVII 411 (835)
++|||+||.|++++.++ |....++++...+|+.+... +.+.+.+| +||+|+||++|.+ .+.+.++.++|+
T Consensus 158 lapTReL~~Qi~nea~k-~~~~s~~~~~~~ygg~~~~~---q~~~~~~g-cdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 158 LAPTRELVDQIYNEARK-FSYLSGMKSVVVYGGTDLGA---QLRFIKRG-CDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred EeCcHHHhhHHHHHHHh-hcccccceeeeeeCCcchhh---hhhhhccC-ccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 99999999999999986 66656789999999865544 44555666 9999999999975 466788999999
Q ss_pred cccccc----ch-hhHHHHHhh-----cCCceEEEeecCCChhhHHHHHhcCCC-cceeeCCC--CCccceeEEecccCH
Q 003268 412 DEEQRF----GV-KQKEKIASF-----KISVDVLTLSATPIPRTLYLALTGFRD-ASLISTPP--PERLPIKTHLSAFSK 478 (835)
Q Consensus 412 DEaHr~----g~-~~~e~l~~~-----~~~~~vL~lSATp~p~tl~~~~~~~~d-~s~i~~~p--~~r~~V~~~~~~~~~ 478 (835)
|||++| |+ .+.+++... ..+.|.++||||.+.....++...+.+ ...+.+.- .....+...+....+
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 999986 43 334444332 247899999999876665555555554 33332221 112223333333333
Q ss_pred HHHHHHHHHHHh------cCC-----eEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeE
Q 003268 479 EKVISAIKYELD------RGG-----QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 479 ~~~~~~i~~~l~------~gg-----qvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~V 547 (835)
...+..+...+. ..+ .++|||.+++.+..++..|... ++....+||..++.+|++.++.|++|.+.|
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~--~~~~~sIhg~~tq~er~~al~~Fr~g~~pv 390 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN--GYPAKSIHGDRTQIEREQALNDFRNGKAPV 390 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC--CCCceeecchhhhhHHHHHHHHhhcCCcce
Confidence 334444444442 233 7999999999999999999988 899999999999999999999999999999
Q ss_pred EEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||||+++++|+|||+|++||+||+|. ...+|+||+||+||.|..|.+..|++..
T Consensus 391 lVaT~VaaRGlDi~~V~hVInyDmP~-d~d~YvHRIGRTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 391 LVATNVAARGLDIPNVKHVINYDMPA-DIDDYVHRIGRTGRVGNGGRATSFFNEK 444 (482)
T ss_pred EEEehhhhcCCCCCCCceeEEeecCc-chhhHHHhccccccCCCCceeEEEeccc
Confidence 99999999999999999999999998 7999999999999999999999999844
No 37
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=346.41 Aligned_cols=324 Identities=24% Similarity=0.290 Sum_probs=268.9
Q ss_pred CCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--------CCCEEEEE
Q 003268 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVL 337 (835)
Q Consensus 267 ~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--------~g~qvlVL 337 (835)
-+. ++..+...-+..|||+|.+|++..+. ++|++-.+-||||||.+|+.|++-.+. +|+-.+|+
T Consensus 230 fDkqLm~airk~Ey~kptpiq~qalptals-------grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vil 302 (731)
T KOG0339|consen 230 FDKQLMTAIRKSEYEKPTPIQCQALPTALS-------GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVIL 302 (731)
T ss_pred chHHHHHHHhhhhcccCCcccccccccccc-------cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEE
Confidence 355 78888888889999999999998753 689999999999999999999987764 36789999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEec
Q 003268 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIID 412 (835)
|||++||.|++.+.+. |++--++++..++|+-+..++. ..|+.| +.|||+||++|.+. ..+.++.+||+|
T Consensus 303 vPTrela~Qi~~eaKk-f~K~ygl~~v~~ygGgsk~eQ~---k~Lk~g-~EivVaTPgRlid~VkmKatn~~rvS~LV~D 377 (731)
T KOG0339|consen 303 VPTRELASQIFSEAKK-FGKAYGLRVVAVYGGGSKWEQS---KELKEG-AEIVVATPGRLIDMVKMKATNLSRVSYLVLD 377 (731)
T ss_pred eccHHHHHHHHHHHHH-hhhhccceEEEeecCCcHHHHH---HhhhcC-CeEEEechHHHHHHHHhhcccceeeeEEEEe
Confidence 9999999999999986 7554489999999999888754 555656 99999999999764 456788999999
Q ss_pred ccccc---ch-hhHHHH-HhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEec-ccCHHHHHHH
Q 003268 413 EEQRF---GV-KQKEKI-ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLS-AFSKEKVISA 484 (835)
Q Consensus 413 EaHr~---g~-~~~e~l-~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~-~~~~~~~~~~ 484 (835)
|+++| |+ .+.+.| ...++..|+|+||||.......++...+.++.-+...... ...+.+.+. ..+....+.+
T Consensus 378 EadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~w 457 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNW 457 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHH
Confidence 99996 65 344444 4568899999999999888888888777776544332111 112322222 2334455666
Q ss_pred HHHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC
Q 003268 485 IKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 485 i~~~l---~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp 561 (835)
+.+.| ...|+||||+.....++.++..|+-. ++.|..+||+|.+.+|.+++.+|+.+...|||+|+++++|+|||
T Consensus 458 l~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk--~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 458 LLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK--GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc--cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 66555 34689999999999999999999887 99999999999999999999999999999999999999999999
Q ss_pred CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCcC
Q 003268 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLL 605 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~ 605 (835)
.+.+||+||.-+ +++.+.||+||+||.|..|.+|.++++.+..
T Consensus 536 ~ikTVvnyD~ar-dIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 536 SIKTVVNYDFAR-DIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ccceeecccccc-hhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 999999999988 9999999999999999999999999987653
No 38
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-38 Score=379.36 Aligned_cols=408 Identities=21% Similarity=0.287 Sum_probs=273.7
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
++.++ +.+.+.. .+|+++|+|.+|++.+.. ++++++++|||||||++|..+++..+..+.+++|++|+++|
T Consensus 6 ~~l~~~~~~~~~~-~~~~l~~~Q~~ai~~l~~-------~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raL 77 (674)
T PRK01172 6 LGYDDEFLNLFTG-NDFELYDHQRMAIEQLRK-------GENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSL 77 (674)
T ss_pred cCCCHHHHHHHhh-CCCCCCHHHHHHHHHHhc-------CCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHH
Confidence 34445 5566654 457899999999998743 57899999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccc
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g 418 (835)
|.|++++++. +... |++|...+|..+.... .+ ..++|+|+||+.+.. ...+.++++|||||+|.++
T Consensus 78 a~q~~~~~~~-l~~~-g~~v~~~~G~~~~~~~--~~-----~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 78 AMEKYEELSR-LRSL-GMRVKISIGDYDDPPD--FI-----KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred HHHHHHHHHH-Hhhc-CCeEEEEeCCCCCChh--hh-----ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 9999999986 5544 7899988886543221 11 347999999986532 2236889999999999975
Q ss_pred hh----hHHH----HHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEec--------cc--CHHH
Q 003268 419 VK----QKEK----IASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLS--------AF--SKEK 480 (835)
Q Consensus 419 ~~----~~e~----l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~--------~~--~~~~ 480 (835)
.. ..+. +....++.++|++|||+... ... ..|.+...+... ....++...+. .. ....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~l--a~wl~~~~~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NEL--AQWLNASLIKSN-FRPVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHH--HHHhCCCccCCC-CCCCCeEEEEEecCeeeeccccccccc
Confidence 32 1222 23345678999999998432 111 122233322211 11122221110 00 1112
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC-----------------------CcEEEEcCCCCHHHHHHHH
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-----------------------VDIAIAHGQQYSRQLEETM 537 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~-----------------------~~V~~lHG~m~~~ere~vl 537 (835)
+...+.+....+++++|||++++.++.++..|...++. .+|+++||+|++++|+.++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 34455555677899999999999999999988765431 2588999999999999999
Q ss_pred HHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC--------CCHhHHHHHhcccCCCC--CceEEEEEecCCCcCCH
Q 003268 538 EKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ--------FGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLLSD 607 (835)
Q Consensus 538 ~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~--------~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~~~~ 607 (835)
+.|++|.++|||||+++++|+|+|+ ..||+.+.+. ++..+|.||+|||||.| ..|.|+++....+. .
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~--~ 381 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--Y 381 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCccc--H
Confidence 9999999999999999999999995 5677766532 46789999999999998 46778887654321 1
Q ss_pred HHHHHHH---------------HHHHH--hhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHHHHHHhhc
Q 003268 608 QALERLA---------------ALEEC--RELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVD 670 (835)
Q Consensus 608 ~a~~rl~---------------~i~~~--~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L~~ai~~l~ 670 (835)
...++.- ..... ..+..|+.....|+. .=....|...|.+ .+...+.++.++..|.
T Consensus 382 ~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~-~~l~~tf~~~~~~------~~~l~~~v~~~l~~L~ 454 (674)
T PRK01172 382 DAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLI-LFYNETLMAIQNG------VDEIDYYIESSLKFLK 454 (674)
T ss_pred HHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHH-HHHHhhhhHhcCc------hHHHHHHHHHHHHHHH
Confidence 1111110 00000 222233333333320 0011122222221 2334566666776654
Q ss_pred Cc-------ccccccCcceEEeeecCCCCccccccccCCc
Q 003268 671 EH-------CVISVPYKSVQIDININPRLPSEYINHLENP 703 (835)
Q Consensus 671 ~~-------~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~ 703 (835)
.. .+.+|++|..++.+|++|..+..++.+.+..
T Consensus 455 ~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~ 494 (674)
T PRK01172 455 ENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHD 494 (674)
T ss_pred HCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhcc
Confidence 22 2346889999999999999998887766553
No 39
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-39 Score=337.02 Aligned_cols=317 Identities=19% Similarity=0.170 Sum_probs=256.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~La~Q~~~ 349 (835)
.+-+.+.-.|+|+|.++|+.++. ++|+|.-+..|+|||.+|..|+++.+.. .-|++|+||||+||.|..+
T Consensus 99 gIfe~G~ekPSPiQeesIPiaLt-------GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq 171 (459)
T KOG0326|consen 99 GIFEKGFEKPSPIQEESIPIALT-------GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ 171 (459)
T ss_pred HHHHhccCCCCCccccccceeec-------chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH
Confidence 33344455799999999998864 6899999999999999999999988754 3599999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEeccccccch-----
Q 003268 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV----- 419 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~g~----- 419 (835)
.+++ +++..+++|.+.+|+.+... .+-++. ..++++||||+++.+- ..++++.++|+||||.+..
T Consensus 172 vc~~-lskh~~i~vmvttGGT~lrD---DI~Rl~-~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~ 246 (459)
T KOG0326|consen 172 VCKE-LSKHLGIKVMVTTGGTSLRD---DIMRLN-QTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQP 246 (459)
T ss_pred HHHH-HhcccCeEEEEecCCccccc---ceeeec-CceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhh
Confidence 9886 77777999999999987654 222333 4599999999998752 3578899999999998632
Q ss_pred hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC-CccceeEEecccCHHHHHHHHHHHHhc--CCeEE
Q 003268 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-ERLPIKTHLSAFSKEKVISAIKYELDR--GGQVF 496 (835)
Q Consensus 420 ~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~-~r~~V~~~~~~~~~~~~~~~i~~~l~~--ggqvl 496 (835)
.....+.-++.+.|++++|||.+-....+...++.++..|..... .-..|..++....+...+..+.....+ -.|.+
T Consensus 247 ~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsI 326 (459)
T KOG0326|consen 247 IVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSI 326 (459)
T ss_pred HHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceE
Confidence 223445566889999999999876666666677777766655322 122344444433333344444333332 26899
Q ss_pred EEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCH
Q 003268 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGL 576 (835)
Q Consensus 497 Vf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl 576 (835)
||||+...+|-+++.+.++ |+.+.++|++|.+++|..++.+|++|.++.||||+.+-+|||++++|.||++|.|+ +.
T Consensus 327 IFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk-~a 403 (459)
T KOG0326|consen 327 IFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK-NA 403 (459)
T ss_pred EEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC-CH
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999999998 89
Q ss_pred hHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 577 AQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 577 ~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
+.|.||+||.||.|..|.|+-+++-++.
T Consensus 404 EtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 404 ETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred HHHHHHccCCccCCCcceEEEEEehhhh
Confidence 9999999999999999999999886643
No 40
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2e-37 Score=370.68 Aligned_cols=315 Identities=31% Similarity=0.374 Sum_probs=256.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
...++.||+.|.+|++.+.+++ ..+++|++|+||||||++|+.++...+..|++++|++||++|+.|++++|++.|
T Consensus 139 ~~~~~~Lt~~Q~~ai~~i~~~~----~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 139 AFEPPTLNPEQAAAVEAIRAAA----GFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred ccCCCCCCHHHHHHHHHHHhcc----CCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 3456789999999999998643 246899999999999999999988888889999999999999999999999876
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhH----------HHH
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----------EKI 425 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~----------e~l 425 (835)
+.++..++++.+..++.+.|..+..|.++|||||++.+. .++.++++|||||+|.+++.+. ..+
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 468999999999988888999999999999999999886 5689999999999999876542 122
Q ss_pred HhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc-cc-eeEEec---------ccCHHHHHHHHHHHHhcCCe
Q 003268 426 ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LP-IKTHLS---------AFSKEKVISAIKYELDRGGQ 494 (835)
Q Consensus 426 ~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r-~~-V~~~~~---------~~~~~~~~~~i~~~l~~ggq 494 (835)
.....+.++|++||||+.+++..+..|......+...+... .| +...-. ..-...+.+.+.+.++++.|
T Consensus 289 ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~q 368 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQ 368 (679)
T ss_pred HhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCe
Confidence 33457889999999999999988876654333332222111 11 111100 01124577889999999999
Q ss_pred EEEEecCc------------------------------------------------------------cChHHHHHHHHh
Q 003268 495 VFYVLPRI------------------------------------------------------------KGLEEPMDFLQQ 514 (835)
Q Consensus 495 vlVf~~~v------------------------------------------------------------~~ie~l~~~L~~ 514 (835)
+++|+|++ .+++.+++.|++
T Consensus 369 vll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~ 448 (679)
T PRK05580 369 VLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAE 448 (679)
T ss_pred EEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHH
Confidence 99998862 156789999999
Q ss_pred hCCCCcEEEEcCCCCH--HHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC-----------CHhHHHH
Q 003268 515 AFPGVDIAIAHGQQYS--RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF-----------GLAQLYQ 581 (835)
Q Consensus 515 ~~p~~~V~~lHG~m~~--~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~-----------sl~~l~Q 581 (835)
.||+++|..+|+++.+ .++++++++|.+|+.+|||+|+++++|+|+|++++|++.|++.. .+..|+|
T Consensus 449 ~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q 528 (679)
T PRK05580 449 LFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQ 528 (679)
T ss_pred hCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHH
Confidence 9999999999999864 67999999999999999999999999999999999988877631 1257899
Q ss_pred HhcccCCCCCceEEEEEec
Q 003268 582 LRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 582 r~GRaGR~g~~G~ay~l~~ 600 (835)
++||+||.+..|.+++...
T Consensus 529 ~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 529 VAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred HHhhccCCCCCCEEEEEeC
Confidence 9999999999999997653
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3.6e-37 Score=377.91 Aligned_cols=316 Identities=20% Similarity=0.244 Sum_probs=233.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---------CCCEEEEEccc
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPT 340 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---------~g~qvlVLvPt 340 (835)
+.+.|.+. ...|||+|.+|++.+++ ++|+|+++|||||||++|++|++..+. .+.+++|++||
T Consensus 22 v~~~~~~~-~~~~tpiQ~~Ai~~il~-------g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPt 93 (876)
T PRK13767 22 VREWFKEK-FGTFTPPQRYAIPLIHE-------GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPL 93 (876)
T ss_pred HHHHHHHc-cCCCCHHHHHHHHHHHc-------CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCH
Confidence 44555554 34799999999999864 579999999999999999999887653 24579999999
Q ss_pred HHHHHHHHHHHHHhh----------c-CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-------cc
Q 003268 341 IVLAKQHFDVVSERF----------S-KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VV 402 (835)
Q Consensus 341 r~La~Q~~~~~~~~f----------~-~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-------l~ 402 (835)
++|+.|+++++.+.+ + ..+++++...+|+.+..++...+. ..++|+|+||+.|... -.
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~ll~~~~~~~~ 169 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAILLNSPKFREK 169 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHHhcChhHHHH
Confidence 999999998765321 1 234789999999988777654442 3589999999987421 13
Q ss_pred cccccEEEeccccccchh--------hHHHHHhhc-CCceEEEeecCCChh-hHHHHHhcC------CCcceeeCCCCCc
Q 003268 403 YNNLGLLVVDEEQRFGVK--------QKEKIASFK-ISVDVLTLSATPIPR-TLYLALTGF------RDASLISTPPPER 466 (835)
Q Consensus 403 ~~~l~lVIIDEaHr~g~~--------~~e~l~~~~-~~~~vL~lSATp~p~-tl~~~~~~~------~d~s~i~~~p~~r 466 (835)
+.++++|||||+|.+... ..+.+..+. ...+++++|||+.+. .....+.+. +...++.......
T Consensus 170 l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 170 LRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred HhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 678999999999997421 123344443 678999999998653 222333332 1122222211111
Q ss_pred cceeEEec------cc---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----CCcEEEEcCCCCHHHH
Q 003268 467 LPIKTHLS------AF---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----GVDIAIAHGQQYSRQL 533 (835)
Q Consensus 467 ~~V~~~~~------~~---~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p----~~~V~~lHG~m~~~er 533 (835)
.++..... .. ....+...+...+..+++++||||++..++.++..|...++ +..+.++||+|++++|
T Consensus 250 ~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 250 FDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred ceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 11111100 00 11234555666667789999999999999999999988654 3689999999999999
Q ss_pred HHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC-C--ceEEEEE
Q 003268 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD-K--EAHAYLF 598 (835)
Q Consensus 534 e~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g-~--~G~ay~l 598 (835)
..+++.|++|+++|||||+++++|||+|++++||+++.|. +.++|+||+||+||.+ . .|.++..
T Consensus 330 ~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~-sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 330 LEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK-SVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC-CHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999997 9999999999999874 3 3555543
No 42
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.1e-39 Score=341.50 Aligned_cols=321 Identities=21% Similarity=0.302 Sum_probs=260.1
Q ss_pred hHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH-H----------hCCCEEEEE
Q 003268 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-V----------SAGKQAMVL 337 (835)
Q Consensus 269 ~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~-~----------~~g~qvlVL 337 (835)
++++.+.+.+...|||+|.+.+|-++. ++|.+..+-||||||++|.+|+... + ..|+..||+
T Consensus 180 ~~L~~lk~KGI~~PTpIQvQGlPvvLs-------GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLii 252 (610)
T KOG0341|consen 180 PLLRGLKKKGIVHPTPIQVQGLPVVLS-------GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLII 252 (610)
T ss_pred HHHHHHHhcCCCCCCceeecCcceEee-------cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEE
Confidence 377888888888999999999999875 6899999999999999998876532 1 247899999
Q ss_pred cccHHHHHHHHHHHHHhhc-----CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----ccccccc
Q 003268 338 APTIVLAKQHFDVVSERFS-----KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLG 407 (835)
Q Consensus 338 vPtr~La~Q~~~~~~~~f~-----~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~ 407 (835)
||+|+||.|.++.+...+. .+|.++..+..|+.+..+ +++.++.| ++|+|+||++|.+. +.+.-+.
T Consensus 253 cPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~e---ql~~v~~G-vHivVATPGRL~DmL~KK~~sLd~CR 328 (610)
T KOG0341|consen 253 CPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVRE---QLDVVRRG-VHIVVATPGRLMDMLAKKIMSLDACR 328 (610)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHH---HHHHHhcC-eeEEEcCcchHHHHHHHhhccHHHHH
Confidence 9999999999988776443 467788999999988776 45666777 99999999999753 4566778
Q ss_pred EEEecccccc---chh--hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCcc--ceeEEecccCHHH
Q 003268 408 LLVVDEEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL--PIKTHLSAFSKEK 480 (835)
Q Consensus 408 lVIIDEaHr~---g~~--~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~--~V~~~~~~~~~~~ 480 (835)
++.+|||+|+ ||. .+..+.-++...|+|+||||++.....++.+.+-.+..+......-. +|.+.+.....+.
T Consensus 329 yL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEa 408 (610)
T KOG0341|consen 329 YLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEA 408 (610)
T ss_pred HhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhh
Confidence 9999999995 663 34445556778899999999988777778777777776665433322 2222221111222
Q ss_pred HHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCC
Q 003268 481 VISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559 (835)
Q Consensus 481 ~~~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GID 559 (835)
..-.+.+.+. ....|+|||..+.+++.+.++|.-. |+.++.+||+..+++|...+..|+.|+.+|||||++++.|+|
T Consensus 409 KiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlK--GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLD 486 (610)
T KOG0341|consen 409 KIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLK--GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLD 486 (610)
T ss_pred hhhhHHHHhccCCCceEEEeccccChHHHHHHHHHc--cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCC
Confidence 2233334443 3578999999999999999998766 899999999999999999999999999999999999999999
Q ss_pred CCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 560 Ip~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+|++.+|||||+|. .++.|.||+||+||+|+.|.|-+|+++..
T Consensus 487 Fp~iqHVINyDMP~-eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 487 FPDIQHVINYDMPE-EIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred CccchhhccCCChH-HHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 99999999999997 89999999999999999999999998664
No 43
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=342.22 Aligned_cols=328 Identities=22% Similarity=0.324 Sum_probs=248.4
Q ss_pred CCCCCh-HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---------CCC
Q 003268 264 PYPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGK 332 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---------~g~ 332 (835)
....++ +...+++...+ .||.+|.+|||.++. ++|++|.++||||||++|++|+...+. +|.
T Consensus 140 ~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~-------grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 140 SLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE-------GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred hcCCCHHHHHHHHHHhccCccchHhhcchhhhhc-------CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 345667 78888886666 999999999999985 689999999999999999999998763 378
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------cccccc
Q 003268 333 QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNL 406 (835)
Q Consensus 333 qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~l 406 (835)
.+||+||||+||.|+|+.+...+..+.-+--+++.|+......+ .+++.| ++|+||||++|.+. +.+.++
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK---ARLRKG-iNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK---ARLRKG-INILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH---HHHhcC-ceEEEcCchHHHHHHhccchheeeee
Confidence 99999999999999999999988877556667777776554433 345667 99999999999763 567899
Q ss_pred cEEEecccccc---chhh-H-HHHHhh-------------cCCceEEEeecCCChhhHHHHHhcCCCcceeeCC------
Q 003268 407 GLLVVDEEQRF---GVKQ-K-EKIASF-------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTP------ 462 (835)
Q Consensus 407 ~lVIIDEaHr~---g~~~-~-e~l~~~-------------~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~------ 462 (835)
.+||+||+|++ ||.. . ..+... ....+-+++|||+...+..++...+.|+..|...
T Consensus 289 RwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~ 368 (708)
T KOG0348|consen 289 RWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQL 368 (708)
T ss_pred eEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhc
Confidence 99999999984 6632 2 222211 1235678999999777777777777777666511
Q ss_pred -CCC-----------ccce----------eEEecccCHH---HHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhh
Q 003268 463 -PPE-----------RLPI----------KTHLSAFSKE---KVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 463 -p~~-----------r~~V----------~~~~~~~~~~---~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~ 515 (835)
|.. .-++ +.++..-+.- .+...+...+. ...+++||+.+.+.++.=+..+...
T Consensus 369 ~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 369 NPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred CcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhh
Confidence 000 0000 0111111111 12222333332 2357899999988877766665432
Q ss_pred C--------------------CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCC
Q 003268 516 F--------------------PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG 575 (835)
Q Consensus 516 ~--------------------p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~s 575 (835)
. -+.++..+||+|++++|..+++.|...+.-||+|||++++|+|+|+|..||.||+| |+
T Consensus 449 l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P-~s 527 (708)
T KOG0348|consen 449 LLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPP-FS 527 (708)
T ss_pred hhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCC-CC
Confidence 1 13478999999999999999999999988899999999999999999999999999 59
Q ss_pred HhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 576 LAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 576 l~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.++|+||+||+.|.|..|.+.+|..+.+
T Consensus 528 ~adylHRvGRTARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 528 TADYLHRVGRTARAGEKGEALLFLLPSE 555 (708)
T ss_pred HHHHHHHhhhhhhccCCCceEEEecccH
Confidence 9999999999999999999999988764
No 44
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=348.04 Aligned_cols=451 Identities=24% Similarity=0.326 Sum_probs=317.1
Q ss_pred CCCCCCCCcccccccC-CCCChhHHHHHHHHhhccccCCCCCCChHHHHHHHHHHHHHHHhhhhhhcCCcCCCCCCCCCC
Q 003268 56 SPTSKKPTQRREKNEN-ETDDISILNERIRRDFGKREATRPVMDSEEADKYIQLVKEQQQKGLQKLKGKKSGGGGAGAGA 134 (835)
Q Consensus 56 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~k~~~~~~~~~~ 134 (835)
+.+.+.|+++.++... +.|+++.||.++|+.+++ ..++.++++.++.+.++++++|. .++....|....
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~k--~~~~~~e~~~~~~~~~~~k~~~~--~~~~~~~Rk~~k------ 119 (593)
T KOG0344|consen 50 PDNLAEPLKSEEKEKLQNSDSSSPLEDIDRRGSSK--KTKPKMEEKLSEDVIAAKKKLQT--SEKLLGIRKSNK------ 119 (593)
T ss_pred ccccccchhhccchhhhcccchhhhhhhhhccccc--ccCchhhhhccccHHHHHHHHhh--hcccccchhcce------
Confidence 4567788888888886 667788999999999999 67788999999999999988876 333333322111
Q ss_pred CCCCCCCCCceeeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCCcccChhhhhHHhhhccCC
Q 003268 135 GDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGMAKLPVKQASRMLYRYNLP 214 (835)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~ 214 (835)
. .+. |. ...-|+.....+.+.|.-.
T Consensus 120 ------------~----------------------------~v~---G~------------~~~~~l~~f~~lt~~~~~~ 144 (593)
T KOG0344|consen 120 ------------I----------------------------NVD---GF------------HLPPPLLSFSDLTYDYSMN 144 (593)
T ss_pred ------------e----------------------------ecc---CC------------CCCCccccccccchhhhhc
Confidence 0 000 00 0011111111111222110
Q ss_pred CCCCchHHHhhccCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003268 215 NETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 215 ~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~tp~Q~~AI~~Il 294 (835)
+. +++.+....+-.|||.|.+|++-++
T Consensus 145 ------~~-----------------------------------------------ll~nl~~~~F~~Pt~iq~~aipvfl 171 (593)
T KOG0344|consen 145 ------KR-----------------------------------------------LLENLQELGFDEPTPIQKQAIPVFL 171 (593)
T ss_pred ------HH-----------------------------------------------HHHhHhhCCCCCCCcccchhhhhhh
Confidence 01 1222333344589999999999987
Q ss_pred HhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--------CCEEEEEcccHHHHHHHHHHHHHhhc--CCCCcEEE
Q 003268 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMVLAPTIVLAKQHFDVVSERFS--KYPDIKVG 364 (835)
Q Consensus 295 ~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--------g~qvlVLvPtr~La~Q~~~~~~~~f~--~~~gi~V~ 364 (835)
. ..|++.|+|||||||++|.+|++..+.. |-+++|+.||++||.|++.++.+ +. .-.+.++.
T Consensus 172 ~-------~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k-~~~~~~t~~~a~ 243 (593)
T KOG0344|consen 172 E-------KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK-YSIDEGTSLRAA 243 (593)
T ss_pred c-------ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh-cCCCCCCchhhh
Confidence 4 4799999999999999999999876532 56899999999999999999987 44 22234555
Q ss_pred EecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-------cccccccEEEeccccccch-----hhHHHHHhh--cC
Q 003268 365 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGV-----KQKEKIASF--KI 430 (835)
Q Consensus 365 ~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-------l~~~~l~lVIIDEaHr~g~-----~~~e~l~~~--~~ 430 (835)
.++......++... +..-.+||+|+||..+... +.+..+.++|+||++++.. .|...+-.. .+
T Consensus 244 ~~~~~~~~~qk~a~---~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~ 320 (593)
T KOG0344|consen 244 QFSKPAYPSQKPAF---LSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSP 320 (593)
T ss_pred hcccccchhhccch---hHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCc
Confidence 55443322222111 1223589999999887543 3566788999999998532 344433322 35
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceeeCC--CCCccceeEEec-ccCHHHHHHHHHHHHhcC--CeEEEEecCccCh
Q 003268 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTP--PPERLPIKTHLS-AFSKEKVISAIKYELDRG--GQVFYVLPRIKGL 505 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~--p~~r~~V~~~~~-~~~~~~~~~~i~~~l~~g--gqvlVf~~~v~~i 505 (835)
++.+=+||||.+......+.....+...+.+. +.....|.+... .-+.....-++++.+..| ..++||+.+.+.+
T Consensus 321 ~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRa 400 (593)
T KOG0344|consen 321 DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERA 400 (593)
T ss_pred chhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHH
Confidence 66777899998777766555444443322221 111111222211 112233455666666665 6899999999999
Q ss_pred HHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcc
Q 003268 506 EEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGR 585 (835)
Q Consensus 506 e~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GR 585 (835)
..++..|. .++++.|.++||..++.+|++++++|+.|+++||+||+++++|+|+.++|+||+||.|. +..+|+||+||
T Consensus 401 k~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~-s~~syihrIGR 478 (593)
T KOG0344|consen 401 KQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ-SDLSYIHRIGR 478 (593)
T ss_pred HHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc-hhHHHHHHhhc
Confidence 99999986 67799999999999999999999999999999999999999999999999999999998 66788899999
Q ss_pred cCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccc
Q 003268 586 VGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGE 644 (835)
Q Consensus 586 aGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~ 644 (835)
+||+|+.|.||+||++.+ ..++..+.++... +|+.+..++|.+++.+...+.
T Consensus 479 tgRag~~g~Aitfytd~d------~~~ir~iae~~~~-sG~evpe~~m~~~k~~~~~kk 530 (593)
T KOG0344|consen 479 TGRAGRSGKAITFYTDQD------MPRIRSIAEVMEQ-SGCEVPEKIMGIKKLSRLKKK 530 (593)
T ss_pred cCCCCCCcceEEEecccc------chhhhhHHHHHHH-cCCcchHHHHhhhhhhhhhhh
Confidence 999999999999998854 4567777766554 899999999988877666544
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.6e-37 Score=371.74 Aligned_cols=318 Identities=19% Similarity=0.213 Sum_probs=232.9
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVL 343 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~L 343 (835)
+.++ +.+.+.+.+..+|+|+|.+|++.... . +.|+++++|||||||++|.++++..+. .+.+++|++|+++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~---~---g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aL 80 (720)
T PRK00254 7 RVDERIKRVLKERGIEELYPPQAEALKSGVL---E---GKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKAL 80 (720)
T ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHHh---C---CCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 3444 77888888878999999999986432 1 579999999999999999999887654 57899999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccc
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g 418 (835)
+.|++++|.. |..+ +++|..++|..+... ..+ +.++|+|+||+.+.. ...++++++|||||+|.++
T Consensus 81 a~q~~~~~~~-~~~~-g~~v~~~~Gd~~~~~--~~~-----~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~ 151 (720)
T PRK00254 81 AEEKYREFKD-WEKL-GLRVAMTTGDYDSTD--EWL-----GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIG 151 (720)
T ss_pred HHHHHHHHHH-Hhhc-CCEEEEEeCCCCCch--hhh-----ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccC
Confidence 9999999986 6555 799999999765432 111 458999999987642 1346899999999999875
Q ss_pred hhh-----HHHHHhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceeeCCCCCccceeEE--------ecccC----HHH
Q 003268 419 VKQ-----KEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTH--------LSAFS----KEK 480 (835)
Q Consensus 419 ~~~-----~e~l~~~~~~~~vL~lSATp~p-~tl~~~~~~~~d~s~i~~~p~~r~~V~~~--------~~~~~----~~~ 480 (835)
... ...+..+....++|++|||+.. ..+.. |.+...+... ....+.... ..... ...
T Consensus 152 ~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~----wl~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 152 SYDRGATLEMILTHMLGRAQILGLSATVGNAEELAE----WLNAELVVSD-WRPVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred CccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHH----HhCCccccCC-CCCCcceeeEecCCeeeccCcchhcchHH
Confidence 422 2234555678899999999843 32222 2222221110 001111100 00000 122
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----------------------C---------CCcEEEEcCCCC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----------------------P---------GVDIAIAHGQQY 529 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~----------------------p---------~~~V~~lHG~m~ 529 (835)
....+.+.+..+++++||||+++.++.++..|.... + ...|+++||+|+
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 334455566678999999999999888776664321 0 135999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE-------ecCCCCCHhHHHHHhcccCCCC--CceEEEEEec
Q 003268 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV-------QDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYP 600 (835)
Q Consensus 530 ~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi-------~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~ 600 (835)
+++|+.+++.|++|.++|||||+++++|+|+|.++.||. ++.+.++..+|+||+|||||.| ..|.|+++.+
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999998877773 4455556789999999999975 6799999987
Q ss_pred CCC
Q 003268 601 DKS 603 (835)
Q Consensus 601 ~~~ 603 (835)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 643
No 46
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.8e-37 Score=353.16 Aligned_cols=287 Identities=32% Similarity=0.428 Sum_probs=232.7
Q ss_pred EEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCC
Q 003268 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH 386 (835)
Q Consensus 307 LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~ 386 (835)
|+.|+||||||++|+.++...+..|++++|++|+++|+.|++++|++.| +.++.++++..+..++.+.|..+.+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5789999999999999888888889999999999999999999999876 467889999999999999999999999
Q ss_pred cceEecchHhhhcccccccccEEEeccccccchhhH----------HHHHhhcCCceEEEeecCCChhhHHHHHhcCCCc
Q 003268 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----------EKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 456 (835)
Q Consensus 387 ~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~----------e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~ 456 (835)
++|||||++.++ .++.++++|||||+|.+++++. ..+.....+.++|++||||+.+++..+..+....
T Consensus 77 ~~IVVGTrsalf--~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~~ 154 (505)
T TIGR00595 77 ILVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRL 154 (505)
T ss_pred CCEEECChHHHc--CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeEE
Confidence 999999999886 5689999999999999876542 1233445689999999999999998887664332
Q ss_pred ceeeCCCCCccceeEEecc--------cCHHHHHHHHHHHHhcCCeEEEEecCcc-------------------------
Q 003268 457 SLISTPPPERLPIKTHLSA--------FSKEKVISAIKYELDRGGQVFYVLPRIK------------------------- 503 (835)
Q Consensus 457 s~i~~~p~~r~~V~~~~~~--------~~~~~~~~~i~~~l~~ggqvlVf~~~v~------------------------- 503 (835)
..+...+.........+.. .-...+.+++.+.+.+++|+++|+|++.
T Consensus 155 ~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~ 234 (505)
T TIGR00595 155 LVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTY 234 (505)
T ss_pred eechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEE
Confidence 2221111111111111111 1124678899999999999999987631
Q ss_pred -----------------------------------ChHHHHHHHHhhCCCCcEEEEcCCCCHHHH--HHHHHHhhcCCee
Q 003268 504 -----------------------------------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQL--EETMEKFAQGAIK 546 (835)
Q Consensus 504 -----------------------------------~ie~l~~~L~~~~p~~~V~~lHG~m~~~er--e~vl~~F~~g~~~ 546 (835)
+++++++.|++.||+++|..+|++++...+ ++++++|.+|+.+
T Consensus 235 h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ 314 (505)
T TIGR00595 235 HKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD 314 (505)
T ss_pred ecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC
Confidence 268899999999999999999999977655 8999999999999
Q ss_pred EEEECCcCccCCCCCCcCEEEEecCCC------C-----CHhHHHHHhcccCCCCCceEEEEEe
Q 003268 547 ILICTNIVESGLDIQNANTIIVQDVQQ------F-----GLAQLYQLRGRVGRADKEAHAYLFY 599 (835)
Q Consensus 547 VLVaT~iie~GIDIp~v~~VIi~d~p~------~-----sl~~l~Qr~GRaGR~g~~G~ay~l~ 599 (835)
|||+|+++++|+|+|++++|++.|++. | ....|+|++||+||.++.|.+++..
T Consensus 315 ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 315 ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred EEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 999999999999999999998877753 1 2467899999999999999998643
No 47
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.2e-36 Score=353.66 Aligned_cols=309 Identities=18% Similarity=0.213 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHH---------HHHHHHHHH---h---CCCEEEEEcccHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV---------ALRAIFCVV---S---AGKQAMVLAPTIVLAK 345 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~v---------al~a~~~~~---~---~g~qvlVLvPtr~La~ 345 (835)
.+++.|.++-.+++..+.+ ++++|++|+||||||++ |+.+.+..+ . .+.+++|++||++||.
T Consensus 160 ~l~~~~~~iQ~qil~~i~~---gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~ 236 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWIS---RKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVR 236 (675)
T ss_pred cCCchhHHHHHHHHHHHHh---CCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHH
Confidence 5666666555555554422 68999999999999998 222333322 1 3569999999999999
Q ss_pred HHHHHHHHhhc--CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhh--
Q 003268 346 QHFDVVSERFS--KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQ-- 421 (835)
Q Consensus 346 Q~~~~~~~~f~--~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~-- 421 (835)
|+..++.+..+ .+.++.|.+..|+.+..... ......+|+|+|+.+.. ..++++++|||||+|++....
T Consensus 237 qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~-----t~~k~~~Ilv~T~~L~l--~~L~~v~~VVIDEaHEr~~~~Dl 309 (675)
T PHA02653 237 LHSITLLKSLGFDEIDGSPISLKYGSIPDELIN-----TNPKPYGLVFSTHKLTL--NKLFDYGTVIIDEVHEHDQIGDI 309 (675)
T ss_pred HHHHHHHHHhCccccCCceEEEEECCcchHHhh-----cccCCCCEEEEeCcccc--cccccCCEEEccccccCccchhH
Confidence 99999986543 23567788888876632111 11124689999987432 357899999999999974322
Q ss_pred -HHHHHhhc-CCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccC-------------HHHHHHHHH
Q 003268 422 -KEKIASFK-ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFS-------------KEKVISAIK 486 (835)
Q Consensus 422 -~e~l~~~~-~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~-------------~~~~~~~i~ 486 (835)
...++... ...++++||||++.....+ ...+.++..+..+.....+++.++.... ...+...+.
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 22232222 2348999999997654433 4566777777765333466666543211 112233333
Q ss_pred HHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHh-hcCCeeEEEECCcCccCCCCCCcC
Q 003268 487 YELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKF-AQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l~-~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F-~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
.... .+++++||||++.+++.+++.|.+..|++.+.++||+|++. ++++++| ++|+.+|||||+++|+|||||+|+
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 3222 45799999999999999999999887789999999999974 5777887 689999999999999999999999
Q ss_pred EEEEec---CCC--------CCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 565 TIIVQD---VQQ--------FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 565 ~VIi~d---~p~--------~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+||+++ .|. .+.++|.||+|||||. ++|.||.|+++++
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999998 332 2678999999999999 7999999998775
No 48
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-37 Score=324.50 Aligned_cols=320 Identities=22% Similarity=0.245 Sum_probs=261.0
Q ss_pred hHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHHHHH
Q 003268 269 PAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAK 345 (835)
Q Consensus 269 ~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~La~ 345 (835)
++++.+-...+-.|+.+|..|+|-++. +.|+++|.++..|+|||.+|.+.++..+.. -+|+++|+||++||.
T Consensus 100 ellkgly~M~F~kPskIQe~aLPlll~-----~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~ 174 (477)
T KOG0332|consen 100 ELLKGLYAMKFQKPSKIQETALPLLLA-----EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAP 174 (477)
T ss_pred HHHhHHHHhccCCcchHHHhhcchhhc-----CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHH
Confidence 377888777777999999999999874 568899999999999999999999988754 479999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEeccccccch
Q 003268 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 346 Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDEaHr~g~ 419 (835)
|+.+.+.+ +++|.++++.+..++.. ..+...+ ..+|+||||+.+.+ -+.+..+.++|+|||+.|-.
T Consensus 175 Q~~eVv~e-MGKf~~ita~yair~sk-~~rG~~i------~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~ 246 (477)
T KOG0332|consen 175 QTGEVVEE-MGKFTELTASYAIRGSK-AKRGNKL------TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMID 246 (477)
T ss_pred HHHHHHHH-hcCceeeeEEEEecCcc-cccCCcc------hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhh
Confidence 99999986 89988888888887641 1111111 25899999997754 24457788999999998733
Q ss_pred hh------HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC--CccceeEEec-ccCHHHHHHHHHHHHh
Q 003268 420 KQ------KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLS-AFSKEKVISAIKYELD 490 (835)
Q Consensus 420 ~~------~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~--~r~~V~~~~~-~~~~~~~~~~i~~~l~ 490 (835)
.+ .......+.+.|+|++|||.......++.....++..+..... .-.+|..++. ....+...+++.+...
T Consensus 247 tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg 326 (477)
T KOG0332|consen 247 TQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYG 326 (477)
T ss_pred cccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHh
Confidence 22 2333445569999999999988888889888888877655422 2234544443 3345556666666433
Q ss_pred c--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE
Q 003268 491 R--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV 568 (835)
Q Consensus 491 ~--ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi 568 (835)
- -||.+|||.++..+..++..+.+. |..|.++||.|...+|..++..|+.|..+|||+|++++||||++.|+.|||
T Consensus 327 ~~tigqsiIFc~tk~ta~~l~~~m~~~--Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 327 LLTIGQSIIFCHTKATAMWLYEEMRAE--GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhhhhheEEEEeehhhHHHHHHHHHhc--CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 2 389999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC-----CHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 569 QDVQQF-----GLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 569 ~d~p~~-----sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
||.|.- +.+.|.||+||+||.|+.|.++-|++.+.
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 998831 46889999999999999999999998764
No 49
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-37 Score=339.35 Aligned_cols=313 Identities=20% Similarity=0.216 Sum_probs=245.4
Q ss_pred ChHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH--------------hCCCE
Q 003268 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV--------------SAGKQ 333 (835)
Q Consensus 268 ~~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~--------------~~g~q 333 (835)
.+++.++...++-.|||+|..+++.+..+ ..|+|..|+||||||++|-+|++..+ ..+.+
T Consensus 190 ~~iL~aL~~~gFs~Pt~IQsl~lp~ai~g------k~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k 263 (731)
T KOG0347|consen 190 MEILRALSNLGFSRPTEIQSLVLPAAIRG------KVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVK 263 (731)
T ss_pred HHHHHHHHhcCCCCCccchhhcccHhhcc------chhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCc
Confidence 44889999999999999999999998753 36999999999999999999988722 12455
Q ss_pred --EEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc--------ccc
Q 003268 334 --AMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--------VVY 403 (835)
Q Consensus 334 --vlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~--------l~~ 403 (835)
+||++|||+||.|+.+.+.. ...++++++..++|+.....+.+.+.. .++|||+||++|... -.|
T Consensus 264 ~~~LV~tPTRELa~QV~~Hl~a-i~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 264 PIALVVTPTRELAHQVKQHLKA-IAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred ceeEEecChHHHHHHHHHHHHH-hccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhh
Confidence 99999999999999999986 777889999999999887766655543 689999999988532 257
Q ss_pred ccccEEEeccccccc----hhhHHHHH------hhcCCceEEEeecCCChh----------------------hHHHHHh
Q 003268 404 NNLGLLVVDEEQRFG----VKQKEKIA------SFKISVDVLTLSATPIPR----------------------TLYLALT 451 (835)
Q Consensus 404 ~~l~lVIIDEaHr~g----~~~~e~l~------~~~~~~~vL~lSATp~p~----------------------tl~~~~~ 451 (835)
+++.++|+||+|||- |.....|. ......|.+.+|||..-. ...+...
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 889999999999982 22222222 224567899999996310 0112223
Q ss_pred cCCCc-ceeeCCCCCccceeEEecccCHHHHHHHHHHH-------------HhcCCeEEEEecCccChHHHHHHHHhhCC
Q 003268 452 GFRDA-SLISTPPPERLPIKTHLSAFSKEKVISAIKYE-------------LDRGGQVFYVLPRIKGLEEPMDFLQQAFP 517 (835)
Q Consensus 452 ~~~d~-s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~-------------l~~ggqvlVf~~~v~~ie~l~~~L~~~~p 517 (835)
+++.. .+|.+.|.... ...+.+..... ..-.|.++||||+++.+.+++-.|..+
T Consensus 419 g~~~kpkiiD~t~q~~t----------a~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L-- 486 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSAT----------ASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL-- 486 (731)
T ss_pred CccCCCeeEecCcchhH----------HHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc--
Confidence 33332 33333222110 11122211110 123589999999999999999999998
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEE
Q 003268 518 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYL 597 (835)
Q Consensus 518 ~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~ 597 (835)
++....+|+.|.+.+|-+-+++|.+...-|||||+++++|+|||+|.+||+|..|+ +.+-|+||.||+.|++..|...+
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPr-tseiYVHRSGRTARA~~~Gvsvm 565 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPR-TSEIYVHRSGRTARANSEGVSVM 565 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCC-ccceeEecccccccccCCCeEEE
Confidence 88899999999999999999999999999999999999999999999999999998 78999999999999999999999
Q ss_pred EecCCCc
Q 003268 598 FYPDKSL 604 (835)
Q Consensus 598 l~~~~~~ 604 (835)
++.+.++
T Consensus 566 l~~P~e~ 572 (731)
T KOG0347|consen 566 LCGPQEV 572 (731)
T ss_pred EeChHHh
Confidence 9988753
No 50
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=340.83 Aligned_cols=378 Identities=18% Similarity=0.195 Sum_probs=304.9
Q ss_pred CcEEEEccCCCccHHHHHHHHHHH--HhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCV--VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~--~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
.-++|.|.||||||++.-..+..+ ...|+.+.|..|+|+.|..++.++.+.++...|..|++..+|.++..
T Consensus 281 QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTS------- 353 (902)
T KOG0923|consen 281 QVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTS------- 353 (902)
T ss_pred cEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccC-------
Confidence 568899999999999854444433 23356699999999999999999999998888899999999977655
Q ss_pred HhcCCcceEecchHhhhc----ccccccccEEEeccccc------cchhhHHHHHhhcCCceEEEeecCCChhhHHHHHh
Q 003268 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQR------FGVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr------~g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
.+.-|-+.|.++|.+ ...+..+++|||||||+ +.+.....+.+++++.++|++|||+.... +..
T Consensus 354 ---ekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAek---FS~ 427 (902)
T KOG0923|consen 354 ---EKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEK---FSA 427 (902)
T ss_pred ---cceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHH---HHH
Confidence 345567888888864 45688999999999997 34555778889999999999999996553 456
Q ss_pred cCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC-------CC
Q 003268 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF-------PG 518 (835)
Q Consensus 452 ~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l------~~ggqvlVf~~~v~~ie~l~~~L~~~~-------p~ 518 (835)
++.+.+++.. |..|+||.+++......+++++....+ ...|++|||....++++.+.+.|.++. ++
T Consensus 428 fFDdapIF~i-PGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~e 506 (902)
T KOG0923|consen 428 FFDDAPIFRI-PGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRE 506 (902)
T ss_pred hccCCcEEec-cCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccce
Confidence 6777777766 688999999998888777777765544 456999999999999888877776543 46
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC-----------------CCHhHHHH
Q 003268 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLYQ 581 (835)
Q Consensus 519 ~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~Q 581 (835)
+-++++|+.++.+.+.+|++.-..|..+|++||+|++++|.|++++.||+-+... .|-++..|
T Consensus 507 liv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~Q 586 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQ 586 (902)
T ss_pred EEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhh
Confidence 6799999999999999999999999999999999999999999999999855321 13467889
Q ss_pred HhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHH
Q 003268 582 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM 661 (835)
Q Consensus 582 r~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~ 661 (835)
|+|||||.| +|.||.+|+...+..+......++|++.+. .+..|.++.| |.-|++.+...+.+....+-.-.+.
T Consensus 587 RaGRAGRtg-PGKCfRLYt~~aY~~eLE~~t~PEIqRtnL--~nvVL~LkSL---GI~Dl~~FdFmDpPp~etL~~aLE~ 660 (902)
T KOG0923|consen 587 RAGRAGRTG-PGKCFRLYTAWAYEHELEEMTVPEIQRTNL--GNVVLLLKSL---GIHDLIHFDFLDPPPTETLLKALEQ 660 (902)
T ss_pred hccccCCCC-CCceEEeechhhhhhhhccCCCcceeeccc--hhHHHHHHhc---CcchhcccccCCCCChHHHHHHHHH
Confidence 999999996 899999999888777777777788988876 6888888888 6667888877776654444444455
Q ss_pred HHHHHHhhcCcccccccCcceEEeeecCCCCccccccccCCc
Q 003268 662 LFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENP 703 (835)
Q Consensus 662 L~~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~ 703 (835)
|. |+.++... ...|.+|+.|++||+||+++++++++...+
T Consensus 661 Ly-aLGALn~~-GeLTk~GrrMaEfP~dPmlsKmi~as~ky~ 700 (902)
T KOG0923|consen 661 LY-ALGALNHL-GELTKLGRRMAEFPVDPMLSKMIVASEKYK 700 (902)
T ss_pred HH-Hhhccccc-cchhhhhhhhhhcCCCHHHHhHHhhhcccc
Confidence 54 56566533 345789999999999999999999987664
No 51
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-36 Score=327.79 Aligned_cols=329 Identities=20% Similarity=0.235 Sum_probs=238.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhhc--CCCCCcEEEEccCCCccHHHHHHHHHHHHhCC----CEEEEEcccHHHH
Q 003268 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTE--RETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLA 344 (835)
Q Consensus 271 ~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~--~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g----~qvlVLvPtr~La 344 (835)
.+.+..++.-.+.|+|..+++.++..... ..+++|+.|.+|||||||++|.+|+.+.+... -+++|++||++|+
T Consensus 149 ~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~ 228 (620)
T KOG0350|consen 149 DQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELA 228 (620)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHH
Confidence 35666777778889999999999876531 12378999999999999999999999988654 5899999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHh-cCCcceEecchHhhhcc------cccccccEEEecccccc
Q 003268 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK-HGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~-~g~~dIIIgT~~~L~~~------l~~~~l~lVIIDEaHr~ 417 (835)
.|++++|.. +..-.|+.|..++|..+......++.... ...+||+|+||++|.++ +.++++.++|||||||+
T Consensus 229 ~QV~~~f~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRl 307 (620)
T KOG0350|consen 229 LQVYDTFKR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRL 307 (620)
T ss_pred HHHHHHHHH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHH
Confidence 999999987 55445899999999877655444443222 12469999999999764 45789999999999997
Q ss_pred chhhHH-HH---H----------------hh-------------------cCCceEEEeecCCChhhHHHHHhcCCCcce
Q 003268 418 GVKQKE-KI---A----------------SF-------------------KISVDVLTLSATPIPRTLYLALTGFRDASL 458 (835)
Q Consensus 418 g~~~~e-~l---~----------------~~-------------------~~~~~vL~lSATp~p~tl~~~~~~~~d~s~ 458 (835)
+....+ ++ . .. .+....+.+|||.......+....+..+.+
T Consensus 308 l~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl 387 (620)
T KOG0350|consen 308 LDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRL 387 (620)
T ss_pred HHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCce
Confidence 432211 11 0 00 012224556666532222222222222222
Q ss_pred eeC--CCCCccce---------eEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEc
Q 003268 459 IST--PPPERLPI---------KTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAH 525 (835)
Q Consensus 459 i~~--~p~~r~~V---------~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~--p~~~V~~lH 525 (835)
..+ +-..++.+ .+... +.+-.+...|. ..+..++++|+++++.+.+++..|+-.+ ++..+..+.
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~~~-~kpl~~~~lI~--~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t 464 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTEPK-FKPLAVYALIT--SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFT 464 (620)
T ss_pred EEeecccceeeecChhhhhceeecccc-cchHhHHHHHH--HhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhh
Confidence 111 11112111 11110 11112222222 2456799999999999999999888433 356778899
Q ss_pred CCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 526 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 526 G~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
|+++...|.+.+.+|..|++.||||+|+++||||+.+++.||+||+|. +..+|+||+||++|+|+.|+||.+.+.++.
T Consensus 465 ~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~-~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 465 GQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPA-SDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred hhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCc-hhhHHHHhhcccccccCCceEEEeeccccc
Confidence 999999999999999999999999999999999999999999999997 789999999999999999999999987753
No 52
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=319.45 Aligned_cols=328 Identities=20% Similarity=0.202 Sum_probs=257.5
Q ss_pred CCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---------CCC
Q 003268 263 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGK 332 (835)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---------~g~ 332 (835)
..|.+|+ +++++.+.+.-.||-+|..||+-+++ ++|++..|-||||||.+|++|+++.+. .+.
T Consensus 22 e~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLE-------gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~ 94 (569)
T KOG0346|consen 22 EEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALE-------GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGP 94 (569)
T ss_pred HHhCCCHHHHHHHHHhCcCCcchhhhcccchhhc-------CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccc
Confidence 3467888 89999999988999999999999875 579999999999999999999987642 367
Q ss_pred EEEEEcccHHHHHHHHHHHHHhhcCCC-CcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------ccccc
Q 003268 333 QAMVLAPTIVLAKQHFDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNN 405 (835)
Q Consensus 333 qvlVLvPtr~La~Q~~~~~~~~f~~~~-gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~ 405 (835)
.++|||||++||+|.|..+.+...-.+ .+++.-+.+..+..... ....+.++|||+||+.+... ..++.
T Consensus 95 sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~ 170 (569)
T KOG0346|consen 95 SAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVLEYLDS 170 (569)
T ss_pred eeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHHhhccchhhhh
Confidence 899999999999999998876332221 35666666544443332 22346799999999988642 34578
Q ss_pred ccEEEeccccc---cchhh--HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCcc---ceeEEeccc-
Q 003268 406 LGLLVVDEEQR---FGVKQ--KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL---PIKTHLSAF- 476 (835)
Q Consensus 406 l~lVIIDEaHr---~g~~~--~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~---~V~~~~~~~- 476 (835)
+.++|+||||. ||+.. +.....+++..|.++||||.......+-...+.++.++.....+-. .+..+....
T Consensus 171 l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 171 LSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred eeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec
Confidence 89999999997 46632 3334556788899999999988777766667777777655332221 233333333
Q ss_pred --CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC--
Q 003268 477 --SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-- 552 (835)
Q Consensus 477 --~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-- 552 (835)
++-.+.-++.+.---.|+.++|+|+++.+.++.-.|.+- |++.+++.|.|+..-|.-+++.|+.|-++|+||||
T Consensus 251 e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s 328 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDS 328 (569)
T ss_pred cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCc
Confidence 233334444443334589999999999999998888887 89999999999999999999999999999999999
Q ss_pred ---------------------------------cCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEe
Q 003268 553 ---------------------------------IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599 (835)
Q Consensus 553 ---------------------------------iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~ 599 (835)
-+++|||+.+|++|+|||+|. +...|+||+||++|+++.|.+..|+
T Consensus 329 ~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~-t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 329 ADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE-TVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred cchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC-chHHHHHhccccccCCCCCceEEEe
Confidence 136899999999999999998 8999999999999999999999999
Q ss_pred cCCCc
Q 003268 600 PDKSL 604 (835)
Q Consensus 600 ~~~~~ 604 (835)
.+.+.
T Consensus 408 ~P~e~ 412 (569)
T KOG0346|consen 408 SPKEE 412 (569)
T ss_pred cchHH
Confidence 88743
No 53
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=340.17 Aligned_cols=377 Identities=17% Similarity=0.235 Sum_probs=298.1
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH-HhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~-~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
..-++|.|+||||||++.-..+..+ ....+.+.|..|+|+.|..+++++.+.++...|-.|++..+|.+...
T Consensus 66 nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts------- 138 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTS------- 138 (674)
T ss_pred CCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCC-------
Confidence 4678999999999999865544443 22234499999999999999999999999888999999999876644
Q ss_pred HhcCCcceEecchHhhhc----ccccccccEEEecccccc------chhhHHHHHhhcCCceEEEeecCCChhhHHHHHh
Q 003268 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~------g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
....|.+.|.++|.+ +..+..+++|||||||+= .....+++.+.+++.++|.||||..... +..
T Consensus 139 ---~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~k---fS~ 212 (674)
T KOG0922|consen 139 ---KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEK---FSE 212 (674)
T ss_pred ---CceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHH---HHH
Confidence 468899999998875 345899999999999972 2333566777788999999999996544 445
Q ss_pred cCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhCCC------C
Q 003268 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAFPG------V 519 (835)
Q Consensus 452 ~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l------~~ggqvlVf~~~v~~ie~l~~~L~~~~p~------~ 519 (835)
++....++.+ |...+||+..+......+++++....+ +..|++|||++..++++.+++.|.+.... .
T Consensus 213 yF~~a~i~~i-~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~ 291 (674)
T KOG0922|consen 213 YFNNAPILTI-PGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE 291 (674)
T ss_pred HhcCCceEee-cCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc
Confidence 5566666655 577899999887766555555443322 45689999999999999999998876321 1
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCC-----------------CCCHhHHHHH
Q 003268 520 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ-----------------QFGLAQLYQL 582 (835)
Q Consensus 520 ~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p-----------------~~sl~~l~Qr 582 (835)
-+.++||.|+.+++.+++..-..|..+|++||+|+|+.|.||++..||+.+.- ..|.++..||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 46789999999999999999999999999999999999999999999985432 1245788999
Q ss_pred hcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHH
Q 003268 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L 662 (835)
.|||||.| +|.||.+|++..+ ........++|++++. +...+.++-| |.+|++.+.....+.......-.+.|
T Consensus 372 aGRAGRt~-pGkcyRLYte~~~-~~~~~~~~PEI~R~~L--s~~vL~Lkal---gi~d~l~F~f~d~P~~~~l~~AL~~L 444 (674)
T KOG0922|consen 372 AGRAGRTG-PGKCYRLYTESAY-DKMPLQTVPEIQRVNL--SSAVLQLKAL---GINDPLRFPFIDPPPPEALEEALEEL 444 (674)
T ss_pred cccCCCCC-CceEEEeeeHHHH-hhcccCCCCceeeech--HHHHHHHHhc---CCCCcccCCCCCCCChHHHHHHHHHH
Confidence 99999984 8999999999887 6677777888888765 5666767765 88899999988888766655555555
Q ss_pred HHHHHhhcCcccccccCcceEEeeecCCCCccccccccC
Q 003268 663 FESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 663 ~~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
. .+.++++...+..++|..|+++|++|.+++.++.+.+
T Consensus 445 ~-~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~ 482 (674)
T KOG0922|consen 445 Y-SLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSE 482 (674)
T ss_pred H-hcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccc
Confidence 4 4556665555544599999999999999999887743
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-34 Score=332.35 Aligned_cols=313 Identities=21% Similarity=0.297 Sum_probs=255.0
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHH
Q 003268 272 AEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 272 ~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~ 350 (835)
..+.+.|.| ..+|.|.++|+.+++ ++|+++..|||.||+++|.+|++-. .+-+||+.|..+|.....+.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~-------g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLS-------GKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHc-------CCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHH
Confidence 446666667 889999999999975 4899999999999999999998754 44799999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEecccccc---c----
Q 003268 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF---G---- 418 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~---g---- 418 (835)
+... |+.+..+++..+..++...+..+..|..++++-+|++|... +.--.++++||||||.. |
T Consensus 77 l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 77 LEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 8874 89999999999999999999999999999999999998753 22346789999999974 3
Q ss_pred --hhhHHHHHhhcCCceEEEeecCCChhhHHHHHhcC--CCcceeeCCCCCccceeEEecccC--HHHHHHHHHHHHhc-
Q 003268 419 --VKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLPIKTHLSAFS--KEKVISAIKYELDR- 491 (835)
Q Consensus 419 --~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~--~d~s~i~~~p~~r~~V~~~~~~~~--~~~~~~~i~~~l~~- 491 (835)
+.....+....+++.++++|||..+.+.......+ .++.++... ..|..+...+.... ...+. .+.....+
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-fdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~ 229 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS-FDRPNLALKVVEKGEPSDQLA-FLATVLPQL 229 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec-CCCchhhhhhhhcccHHHHHH-HHHhhcccc
Confidence 33344455555689999999999988876555443 443343332 22333322222221 22222 33332233
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV 571 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~ 571 (835)
++..+|+|.+++.+|.++++|... |+.+..+||+|+.++|+.+.++|..++.+|+|||..+++|||-||+++||++|+
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 345799999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 572 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 572 p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
|. +++.|+|-+|||||.|.++.|++||.+.+.
T Consensus 308 P~-s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 308 PG-SIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred CC-CHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 98 999999999999999999999999997763
No 55
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=340.37 Aligned_cols=316 Identities=21% Similarity=0.250 Sum_probs=254.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--------CCEEEEEcccH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMVLAPTI 341 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--------g~qvlVLvPtr 341 (835)
+.+.|... +.+|||.|.+||+.|.+ |.|+||++|||||||++|++|++..+.. +-.++|+.|.+
T Consensus 12 v~~~~~~~-~~~~t~~Q~~a~~~i~~-------G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 12 VREWFKRK-FTSLTPPQRYAIPEIHS-------GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLK 83 (814)
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHhC-------CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHH
Confidence 66777777 66999999999999964 6899999999999999999999976532 25799999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-------cccccccEEEeccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEE 414 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-------l~~~~l~lVIIDEa 414 (835)
+|.+.+..++..... ..|+.|.+-+|+++..++.++.+ ..+||+|+||+.|.-. -.|.++.+|||||.
T Consensus 84 ALn~Di~~rL~~~~~-~~G~~v~vRhGDT~~~er~r~~~----~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEi 158 (814)
T COG1201 84 ALNNDIRRRLEEPLR-ELGIEVAVRHGDTPQSEKQKMLK----NPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEI 158 (814)
T ss_pred HHHHHHHHHHHHHHH-HcCCccceecCCCChHHhhhccC----CCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehh
Confidence 999999999987444 44899999999998888765543 5699999999877421 23689999999999
Q ss_pred ccc-----chh---hHHHHHhhcCCceEEEeecCCC-hhhHHHHHhcCC-CcceeeCCCCCccceeEEecccC-------
Q 003268 415 QRF-----GVK---QKEKIASFKISVDVLTLSATPI-PRTLYLALTGFR-DASLISTPPPERLPIKTHLSAFS------- 477 (835)
Q Consensus 415 Hr~-----g~~---~~e~l~~~~~~~~vL~lSATp~-p~tl~~~~~~~~-d~s~i~~~p~~r~~V~~~~~~~~------- 477 (835)
|.+ |+. ..+.+..+..+.+.+++|||.. |.....++.+.. ...++...-.....+........
T Consensus 159 Hel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~ 238 (814)
T COG1201 159 HALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEEL 238 (814)
T ss_pred hhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccch
Confidence 987 332 2456666656899999999985 444555666666 44555554444444443332221
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccC
Q 003268 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 478 ~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~G 557 (835)
.......+.+.+.+...++||+|++..+|.++..|++.++ ..+..+||+++.++|..+.++|++|+.+++|||+.+|-|
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhc
Confidence 2345667777778888999999999999999999999864 789999999999999999999999999999999999999
Q ss_pred CCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC-CceEEEEEec
Q 003268 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD-KEAHAYLFYP 600 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g-~~G~ay~l~~ 600 (835)
||+-+++.||++++|+ +.+.+.||+||+|+.- .....+++..
T Consensus 318 IDiG~vdlVIq~~SP~-sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 318 IDIGDIDLVIQLGSPK-SVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred cccCCceEEEEeCCcH-HHHHHhHhccccccccCCcccEEEEec
Confidence 9999999999999998 9999999999999764 4455555543
No 56
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.8e-35 Score=326.94 Aligned_cols=318 Identities=19% Similarity=0.203 Sum_probs=254.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHHHHHHH
Q 003268 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 271 ~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~La~Q~ 347 (835)
+..+....+-.||++|..|||.++. +||+||++..|+|||++|..+++..+.. ..+++|++|||++|.|+
T Consensus 37 l~glrrn~f~~ptkiQaaAIP~~~~-------kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI 109 (980)
T KOG4284|consen 37 LLGLRRNAFALPTKIQAAAIPAIFS-------KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQI 109 (980)
T ss_pred HHHHHhhcccCCCchhhhhhhhhhc-------ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHH
Confidence 3444455556899999999999874 5899999999999999998777766533 57999999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccch---
Q 003268 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV--- 419 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g~--- 419 (835)
.+++...-..|.|.+|.++.|+......... + .+++|+||||+++.. .++...+.++|+||||.+..
T Consensus 110 ~~tv~~v~~sf~g~~csvfIGGT~~~~d~~r---l--k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~s 184 (980)
T KOG4284|consen 110 KETVRKVAPSFTGARCSVFIGGTAHKLDLIR---L--KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTES 184 (980)
T ss_pred HHHHHHhcccccCcceEEEecCchhhhhhhh---h--hhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhh
Confidence 9999885555779999999999776543332 2 347899999998853 45678899999999998622
Q ss_pred ---hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEecccCH-----HH---HHHHHH
Q 003268 420 ---KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSK-----EK---VISAIK 486 (835)
Q Consensus 420 ---~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~~~~~-----~~---~~~~i~ 486 (835)
.....+..++...|++.+|||-+.........+++++.++...... -..++.++..... +. ....+.
T Consensus 185 fq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~ 264 (980)
T KOG4284|consen 185 FQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLT 264 (980)
T ss_pred HHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHH
Confidence 1123456778899999999997665556666778898888764332 2334455433221 11 122222
Q ss_pred HHHhc--CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC
Q 003268 487 YELDR--GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l~~--ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
..+.+ -.|.||||+....++-++..|... |+.|.++.|.|++.+|..++..+++-.++|||+|+..++|||-|+||
T Consensus 265 ~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss--G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vN 342 (980)
T KOG4284|consen 265 HVFKSIPYVQALVFCDQISRAEPIATHLKSS--GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVN 342 (980)
T ss_pred HHHhhCchHHHHhhhhhhhhhhHHHHHhhcc--CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccc
Confidence 22222 368999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 565 ~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.||+.|+|. +-..|.||+|||||.|..|.+++|+..+.
T Consensus 343 LVVNiD~p~-d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 343 LVVNIDAPA-DEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred eEEecCCCc-chHHHHHHhhhcccccccceeEEEeccch
Confidence 999999997 88999999999999999999999987653
No 57
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-35 Score=342.84 Aligned_cols=319 Identities=21% Similarity=0.252 Sum_probs=254.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--------CCCEEEEEcccH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMVLAPTI 341 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--------~g~qvlVLvPtr 341 (835)
++..+.+.++-.|||+|.+|||+|+. ++|+|.+|-||||||++|++|++.++. +|+-++|++||+
T Consensus 376 il~tlkkl~y~k~~~IQ~qAiP~Ims-------GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtr 448 (997)
T KOG0334|consen 376 ILETLKKLGYEKPTPIQAQAIPAIMS-------GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTR 448 (997)
T ss_pred HHHHHHHhcCCCCcchhhhhcchhcc-------CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCH
Confidence 66667555666999999999999964 689999999999999999999997653 378999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc--------ccccccEEEecc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--------VYNNLGLLVVDE 413 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l--------~~~~l~lVIIDE 413 (835)
+|+.|+.+.++. |....++++..++|+....+ ++..+++| +.|+||||+++.+.+ .+.++-+||+||
T Consensus 449 ela~QI~r~~~k-f~k~l~ir~v~vygg~~~~~---qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 449 ELAMQIHREVRK-FLKLLGIRVVCVYGGSGISQ---QIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred HHHHHHHHHHHH-HHhhcCceEEEecCCccHHH---HHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999987 66667999999999876655 66778889 999999999876432 344556999999
Q ss_pred cccc---ch--hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cceeEEecccC-HHHHH---
Q 003268 414 EQRF---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFS-KEKVI--- 482 (835)
Q Consensus 414 aHr~---g~--~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~~-~~~~~--- 482 (835)
+|++ |+ .....|..+++..|++++|||.+......+..-+..+..+...-... ..|...+.... .+...
T Consensus 524 aDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred hhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH
Confidence 9996 44 22346778899999999999986655555554444332222211111 12333333222 22222
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCC
Q 003268 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~ 562 (835)
..+..+....++++|||...+.++.+.+.|.+. ++.+..+||+.++.+|+.++++|+++.+.+||||+++++|+|+++
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a--g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~ 681 (997)
T KOG0334|consen 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKA--GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKE 681 (997)
T ss_pred HHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc--CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccccc
Confidence 223333345799999999999999999999977 888888999999999999999999999999999999999999999
Q ss_pred cCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+..||+||+|. ..++|.||.||+||+|+.|.||+|.++++
T Consensus 682 l~Lvvnyd~pn-h~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 682 LILVVNYDFPN-HYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred ceEEEEcccch-hHHHHHHHhcccccCCccceeEEEeChHH
Confidence 99999999997 78999999999999999999999999854
No 58
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.2e-35 Score=357.66 Aligned_cols=375 Identities=16% Similarity=0.218 Sum_probs=256.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
+..++|+|+||||||++. ..++.....+ ..+++..|++..|..++.++.+.++...|..|++-.++.+..
T Consensus 89 ~~VviI~GeTGSGKTTql-Pq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~------- 160 (1294)
T PRK11131 89 HQVVIVAGETGSGKTTQL-PKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQV------- 160 (1294)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCcccc-------
Confidence 356889999999999963 2222222333 367778898776666666666666543366777776664432
Q ss_pred hHhcCCcceEecchHhhhc----ccccccccEEEeccccc-c---ch--hhHHHHHhhcCCceEEEeecCCChhhHHHHH
Q 003268 381 MIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQR-F---GV--KQKEKIASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 381 ~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr-~---g~--~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~ 450 (835)
+...+|+|+|+++|.+ +..+.++++|||||+|+ . ++ .....+...+++.++|+||||+.+.. +.
T Consensus 161 ---s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~---fs 234 (1294)
T PRK11131 161 ---SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPER---FS 234 (1294)
T ss_pred ---CCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHH---HH
Confidence 1348999999998864 33478999999999995 2 12 11222333346789999999997653 33
Q ss_pred hcCCCcceeeCCCCCccceeEEecccCH------HHHHHHHHHHH-----hcCCeEEEEecCccChHHHHHHHHhh-CCC
Q 003268 451 TGFRDASLISTPPPERLPIKTHLSAFSK------EKVISAIKYEL-----DRGGQVFYVLPRIKGLEEPMDFLQQA-FPG 518 (835)
Q Consensus 451 ~~~~d~s~i~~~p~~r~~V~~~~~~~~~------~~~~~~i~~~l-----~~ggqvlVf~~~v~~ie~l~~~L~~~-~p~ 518 (835)
.++.+.+++.++ ...++|..++..... ......+...+ ...|++|||+|+..+++.+++.|... ++.
T Consensus 235 ~~F~~apvI~V~-Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~ 313 (1294)
T PRK11131 235 RHFNNAPIIEVS-GRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRH 313 (1294)
T ss_pred HHcCCCCEEEEc-CccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 445555666554 344677666543321 12222222221 24589999999999999999999875 234
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecC---------------C--CCCHhHHHH
Q 003268 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDV---------------Q--QFGLAQLYQ 581 (835)
Q Consensus 519 ~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~---------------p--~~sl~~l~Q 581 (835)
..|.++||+|++.+|+.+++. .|..+|||||+++|+|||||++++||+++. + ..|.++|.|
T Consensus 314 ~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~Q 391 (1294)
T PRK11131 314 TEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQ 391 (1294)
T ss_pred ceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhh
Confidence 568899999999999999986 478999999999999999999999999863 1 124578999
Q ss_pred HhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHH
Q 003268 582 LRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEM 661 (835)
Q Consensus 582 r~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~ 661 (835)
|+||+||. .+|.||.+|+++++.. ......++|.+++. +++.+.++.+ |.+++..+.....+....+.--.+.
T Consensus 392 RaGRAGR~-~~G~c~rLyte~d~~~-~~~~~~PEIlR~~L--~~viL~lk~l---gl~di~~F~fldpP~~~~i~~al~~ 464 (1294)
T PRK11131 392 RKGRCGRV-SEGICIRLYSEDDFLS-RPEFTDPEILRTNL--ASVILQMTAL---GLGDIAAFPFVEAPDKRNIQDGVRL 464 (1294)
T ss_pred hccccCCC-CCcEEEEeCCHHHHHh-hhcccCCccccCCH--HHHHHHHHHc---CCCCcceeeCCCCCCHHHHHHHHHH
Confidence 99999999 7899999998765432 22222344554443 4556666554 6677776665555554444433444
Q ss_pred HHHHHHhhcCc----ccccccCcceEEeeecCCCCccccccccCC
Q 003268 662 LFESLSKVDEH----CVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 662 L~~ai~~l~~~----~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
|. .+..++.+ ....|++|..++.||+||.+++.++.+...
T Consensus 465 L~-~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~ 508 (1294)
T PRK11131 465 LE-ELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKH 508 (1294)
T ss_pred HH-HCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhc
Confidence 43 33444321 234689999999999999999999887543
No 59
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-33 Score=330.85 Aligned_cols=312 Identities=30% Similarity=0.383 Sum_probs=256.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
...+++.|..|++.|.... ......|+.|.||||||++|+.++...+..|+++|+|||...|..|+.++|+.+|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~---~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-- 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL---GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-- 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhc---ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC--
Confidence 4588999999999998753 22467899999999999999999999999999999999999999999999999984
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHH----------HHHhh
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE----------KIASF 428 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e----------~l~~~ 428 (835)
.+|+++|++.+..++...|..+.+|++.|||||.+.++ .+|+++|+|||||+|.-.+++.+ .++..
T Consensus 271 --~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 271 --AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred --CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 67999999999999987654432 23444
Q ss_pred cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC-------CccceeEEeccc---CHHHHHHHHHHHHhcCCeEEEE
Q 003268 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-------ERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFYV 498 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~-------~r~~V~~~~~~~---~~~~~~~~i~~~l~~ggqvlVf 498 (835)
..++.+|+-||||.-++++.+..+-.....+..... ...++..+.... -...++++|.+.+.++.|+++|
T Consensus 347 ~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llf 426 (730)
T COG1198 347 KENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLF 426 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999999888776322222211111 011111111111 1246889999999999999999
Q ss_pred ecCc------------------------------------------------------------cChHHHHHHHHhhCCC
Q 003268 499 LPRI------------------------------------------------------------KGLEEPMDFLQQAFPG 518 (835)
Q Consensus 499 ~~~v------------------------------------------------------------~~ie~l~~~L~~~~p~ 518 (835)
+|++ -++|++++.|+..||+
T Consensus 427 lnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~ 506 (730)
T COG1198 427 LNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPG 506 (730)
T ss_pred EccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCC
Confidence 9872 2589999999999999
Q ss_pred CcEEEEcCCCCH--HHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC------C-----CHhHHHHHhcc
Q 003268 519 VDIAIAHGQQYS--RQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ------F-----GLAQLYQLRGR 585 (835)
Q Consensus 519 ~~V~~lHG~m~~--~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~------~-----sl~~l~Qr~GR 585 (835)
+++..+.++.+. ...+..+..|.+|+.+|||.|++++.|.|+||++.|.+.|++. | ....+.|-.||
T Consensus 507 ~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGR 586 (730)
T COG1198 507 ARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGR 586 (730)
T ss_pred CcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhh
Confidence 999999998754 4578899999999999999999999999999999999988763 1 12457899999
Q ss_pred cCCCCCceEEEEEe
Q 003268 586 VGRADKEAHAYLFY 599 (835)
Q Consensus 586 aGR~g~~G~ay~l~ 599 (835)
|||.+.+|.+++=.
T Consensus 587 AgR~~~~G~VvIQT 600 (730)
T COG1198 587 AGRAGKPGEVVIQT 600 (730)
T ss_pred hccCCCCCeEEEEe
Confidence 99999999987643
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=341.32 Aligned_cols=314 Identities=22% Similarity=0.334 Sum_probs=232.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~ 348 (835)
+.+.+...+..++.|.|+.|+....- + +.|+|||+|||||||++++++++..+.+ +.+++++||+++||.|.+
T Consensus 20 v~~i~~~~~~~el~~~qq~av~~~~~---~---~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~ 93 (766)
T COG1204 20 VLEILKGDGIDELFNPQQEAVEKGLL---S---DENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKY 93 (766)
T ss_pred HHHHhccCChHHhhHHHHHHhhcccc---C---CCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHH
Confidence 33334444444889999999887653 1 6899999999999999999999998887 489999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh----c-ccccccccEEEeccccccchhhH-
Q 003268 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG----S-RVVYNNLGLLVVDEEQRFGVKQK- 422 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~----~-~l~~~~l~lVIIDEaHr~g~~~~- 422 (835)
++|+ +|..+ |++|+..+|+..... +.+ .+++|+|+||+.+- + .....++++|||||+|..+...+
T Consensus 94 ~~~~-~~~~~-GirV~~~TgD~~~~~--~~l-----~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 94 EEFS-RLEEL-GIRVGISTGDYDLDD--ERL-----ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHhh-hHHhc-CCEEEEecCCcccch--hhh-----ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccC
Confidence 9999 57777 899999999765433 122 45899999998763 2 22357899999999999866522
Q ss_pred -------HHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceee----CCCCCc-cce-eEEe-c--------ccCHHH
Q 003268 423 -------EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS----TPPPER-LPI-KTHL-S--------AFSKEK 480 (835)
Q Consensus 423 -------e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~----~~p~~r-~~V-~~~~-~--------~~~~~~ 480 (835)
..+.......+++++|||.+.-.. ...|.+...+. -.|..+ .+. .... . ....+.
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~~e---vA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNAEE---VADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCHHH---HHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 223344455899999999743322 22222222211 111111 111 1111 1 112356
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC-------------------C----------------CCcEEEEc
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-------------------P----------------GVDIAIAH 525 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~-------------------p----------------~~~V~~lH 525 (835)
....+...+..++|++|||++++.+...++.|...+ . ...++++|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 677888888999999999999999888888877311 0 02688999
Q ss_pred CCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCC---------HhHHHHHhcccCCCC--CceE
Q 003268 526 GQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFG---------LAQLYQLRGRVGRAD--KEAH 594 (835)
Q Consensus 526 G~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~s---------l~~l~Qr~GRaGR~g--~~G~ 594 (835)
++|+.++|+.+.+.|+.|.++|||||++++.|+|+| +++||+.|...|+ ..++.|+.|||||.| ..|+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~ 400 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGE 400 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCc
Confidence 999999999999999999999999999999999999 9999986654443 568999999999998 5678
Q ss_pred EEEEecCC
Q 003268 595 AYLFYPDK 602 (835)
Q Consensus 595 ay~l~~~~ 602 (835)
++++.+..
T Consensus 401 ~~i~~~~~ 408 (766)
T COG1204 401 AIILATSH 408 (766)
T ss_pred EEEEecCc
Confidence 88877444
No 61
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.6e-34 Score=353.15 Aligned_cols=375 Identities=15% Similarity=0.213 Sum_probs=266.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
...++|+|+||||||++.-..++..- .....++++.|+|..|..++.++.+.++...|..|++-.++.+...
T Consensus 82 ~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s------- 154 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVS------- 154 (1283)
T ss_pred CceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccC-------
Confidence 35789999999999997533333221 1124678889999999999999999887766788888877765432
Q ss_pred HhcCCcceEecchHhhhc----ccccccccEEEeccccc-c-----chhhHHHHHhhcCCceEEEeecCCChhhHHHHHh
Q 003268 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQR-F-----GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr-~-----g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
....|+++|++.|.. +..+.++++|||||+|+ . .......+...+++.++|+||||+.... +..
T Consensus 155 ---~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld~~~---fa~ 228 (1283)
T TIGR01967 155 ---SNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPER---FSR 228 (1283)
T ss_pred ---CCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcCHHH---HHH
Confidence 347899999998864 34578999999999995 2 1122333444567889999999997543 333
Q ss_pred cCCCcceeeCCCCCccceeEEecccCH----------HHHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhC-CCC
Q 003268 452 GFRDASLISTPPPERLPIKTHLSAFSK----------EKVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAF-PGV 519 (835)
Q Consensus 452 ~~~d~s~i~~~p~~r~~V~~~~~~~~~----------~~~~~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~L~~~~-p~~ 519 (835)
++.+.+++.++ ...+|+..++..... +.+...+...+. ..|+++||+|+..+++.+++.|.... ++.
T Consensus 229 ~F~~apvI~V~-Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~ 307 (1283)
T TIGR01967 229 HFNNAPIIEVS-GRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHT 307 (1283)
T ss_pred HhcCCCEEEEC-CCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCc
Confidence 44555566553 445677766543211 112233333222 45899999999999999999998763 457
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC-----------------CCHhHHHHH
Q 003268 520 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLYQL 582 (835)
Q Consensus 520 ~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~Qr 582 (835)
.|.++||+|++++|++++..+ +..+|||||+++|+|||||++++||+++.++ .|.+++.||
T Consensus 308 ~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 308 EILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred EEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 799999999999999997765 3479999999999999999999999988532 245799999
Q ss_pred hcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHH
Q 003268 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L 662 (835)
+||+||.+ +|.||.+|+++++.. ......++|.+.+. +++.+.++.+ |.+++........+....+..-.+.|
T Consensus 386 aGRAGR~~-~G~cyRLyte~~~~~-~~~~~~PEIlR~~L--~~viL~l~~l---g~~di~~f~fldpP~~~~i~~A~~~L 458 (1283)
T TIGR01967 386 KGRCGRVA-PGICIRLYSEEDFNS-RPEFTDPEILRTNL--ASVILQMLAL---RLGDIAAFPFIEAPDPRAIRDGFRLL 458 (1283)
T ss_pred hhhhCCCC-CceEEEecCHHHHHh-hhhccCcccccccH--HHHHHHHHhc---CCCCcccccCCCCCCHHHHHHHHHHH
Confidence 99999997 999999998775432 22233445555543 4555555544 66676666555555544444444444
Q ss_pred HHHHHhhcCcc--cccccCcceEEeeecCCCCccccccccC
Q 003268 663 FESLSKVDEHC--VISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 663 ~~ai~~l~~~~--~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
. .+..++.+. ...|++|..++.+|+||.+++.++.+..
T Consensus 459 ~-~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~ 498 (1283)
T TIGR01967 459 E-ELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHR 498 (1283)
T ss_pred H-HCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhh
Confidence 4 344555333 2468999999999999999999987654
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.5e-33 Score=333.56 Aligned_cols=302 Identities=16% Similarity=0.191 Sum_probs=209.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCC-cEEEEccCCCccHHHHHHHHHHHH--hCCCEEE-EEcccHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPM-DRLICGDVGFGKTEVALRAIFCVV--SAGKQAM-VLAPTIVLAKQH 347 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~-d~LI~g~TGsGKT~val~a~~~~~--~~g~qvl-VLvPtr~La~Q~ 347 (835)
+.|.+...|+|||+|.++|+.++. ++ ++++++|||||||.++..+.+... ....+.+ +++|||+||.|+
T Consensus 6 ~ff~~~~G~~PtpiQ~~~i~~il~-------G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi 78 (844)
T TIGR02621 6 EWYQGLHGYSPFPWQLSLAERFVA-------GQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQV 78 (844)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHc-------CCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHH
Confidence 445565678899999999999874 33 678889999999986543333211 1234455 577999999999
Q ss_pred HHHHHHhhcCC----------------------CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc---
Q 003268 348 FDVVSERFSKY----------------------PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV--- 402 (835)
Q Consensus 348 ~~~~~~~f~~~----------------------~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~--- 402 (835)
++++......+ .++++..+.|+.+... ++..+..+ ++|||||..++.+...
T Consensus 79 ~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~---q~~~l~~~-p~IIVgT~D~i~sr~L~~g 154 (844)
T TIGR02621 79 TEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND---EWMLDPHR-PAVIVGTVDMIGSRLLFSG 154 (844)
T ss_pred HHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH---HHHhcCCC-CcEEEECHHHHcCCccccc
Confidence 99998733322 1488999999987654 45666655 8999999987754432
Q ss_pred --------------cccccEEEeccccc-cch-hhHHHHHhh---cC---CceEEEeecCCChhhHHHHHhcCCCcceee
Q 003268 403 --------------YNNLGLLVVDEEQR-FGV-KQKEKIASF---KI---SVDVLTLSATPIPRTLYLALTGFRDASLIS 460 (835)
Q Consensus 403 --------------~~~l~lVIIDEaHr-~g~-~~~e~l~~~---~~---~~~vL~lSATp~p~tl~~~~~~~~d~s~i~ 460 (835)
++++.++|+||||. +++ ...+.|... .. +.|+++||||++............+...+.
T Consensus 155 Yg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~ 234 (844)
T TIGR02621 155 YGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHP 234 (844)
T ss_pred cccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceee
Confidence 57889999999994 244 223444332 22 268999999997654444333332332222
Q ss_pred CCCCCc--cceeEEecccCHHH---HHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHH
Q 003268 461 TPPPER--LPIKTHLSAFSKEK---VISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLE 534 (835)
Q Consensus 461 ~~p~~r--~~V~~~~~~~~~~~---~~~~i~~~l-~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere 534 (835)
...... ..+..++....... ....+...+ ..+++++||||+++.++.+++.|.+. ++ ..+||+|++.+|+
T Consensus 235 V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~--g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 235 VLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE--KF--ELLTGTLRGAERD 310 (844)
T ss_pred cccccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc--CC--eEeeCCCCHHHHh
Confidence 221111 11222222111111 122222222 45689999999999999999999876 43 8999999999999
Q ss_pred -----HHHHHhhc----CC-------eeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCc
Q 003268 535 -----ETMEKFAQ----GA-------IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE 592 (835)
Q Consensus 535 -----~vl~~F~~----g~-------~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~ 592 (835)
.+++.|++ |. .+|||||+++++||||+. ++||++.+| +++|+||+||+||.|+.
T Consensus 311 ~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP---~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 311 DLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP---FESMQQRFGRVNRFGEL 380 (844)
T ss_pred hHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC---HHHHHHHhcccCCCCCC
Confidence 88999987 44 789999999999999995 888886655 68999999999999874
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=5.7e-33 Score=323.08 Aligned_cols=303 Identities=16% Similarity=0.171 Sum_probs=212.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCC-EEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~-qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
.+.|+|+|.+|++.++. +.+.++++|||+|||.++...+...+..++ ++||||||++|+.|+.+++.+ |..
T Consensus 112 ~~~~r~~Q~~av~~~l~-------~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~-~~~ 183 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK-------NNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVD-YRL 183 (501)
T ss_pred cCCCCHHHHHHHHHHHh-------cCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHH-hcc
Confidence 46899999999998874 256899999999999987554433344444 999999999999999999987 555
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc--ccccccEEEeccccccchhhHHHH-HhhcCCceE
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVKQKEKI-ASFKISVDV 434 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l--~~~~l~lVIIDEaHr~g~~~~e~l-~~~~~~~~v 434 (835)
.+...+..+.++.... ...+|+|+|++.+.+.. .++++++||+||||++.......+ ..+.+..++
T Consensus 184 ~~~~~~~~i~~g~~~~-----------~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~ 252 (501)
T PHA02558 184 FPREAMHKIYSGTAKD-----------TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFK 252 (501)
T ss_pred ccccceeEEecCcccC-----------CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccchhHHHHHHhhhccceE
Confidence 5444554444443221 23689999999886533 468999999999999876554444 444456689
Q ss_pred EEeecCCChhhH-HHHHhcCCCcceeeCC-----C-CCccce-----eE----------Eeccc-----------CH-HH
Q 003268 435 LTLSATPIPRTL-YLALTGFRDASLISTP-----P-PERLPI-----KT----------HLSAF-----------SK-EK 480 (835)
Q Consensus 435 L~lSATp~p~tl-~~~~~~~~d~s~i~~~-----p-~~r~~V-----~~----------~~~~~-----------~~-~~ 480 (835)
++|||||..... .....++.++...... . ....+. .. .-..+ .. ..
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999954221 1111111111100000 0 000000 00 00000 00 11
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEEC-CcCccCCC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT-NIVESGLD 559 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT-~iie~GID 559 (835)
+...+......+.+++|||+++++++.+++.|... +..+..+||+|+.++|+.+++.|++|+..||||| +++++|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~--g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV--YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 22223333356788999999999999999999997 7899999999999999999999999999999998 89999999
Q ss_pred CCCcCEEEEecCCCCCHhHHHHHhcccCCCCCc---eEEEEEecCCC
Q 003268 560 IQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE---AHAYLFYPDKS 603 (835)
Q Consensus 560 Ip~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~---G~ay~l~~~~~ 603 (835)
+|++++||+..++. +...|.||+||++|.+.. ...|-+++.-.
T Consensus 411 ip~ld~vIl~~p~~-s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 411 IKNLHHVIFAHPSK-SKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred cccccEEEEecCCc-chhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999888876 788999999999998743 34455555433
No 64
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-34 Score=307.61 Aligned_cols=327 Identities=21% Similarity=0.233 Sum_probs=268.0
Q ss_pred CCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEE
Q 003268 263 PPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVL 337 (835)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVL 337 (835)
..+.++. +.+++...++..|||+|++.||-|++ +.|++..+-||||||.+|++|+++.+.. |-+++++
T Consensus 24 qsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe-------~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralil 96 (529)
T KOG0337|consen 24 QSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILE-------GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALIL 96 (529)
T ss_pred cccCCCHHHHHHHHHhhcCCCCchhcccccceee-------ccccceeeecCCcchhhHHHHHHHHHhhccccccceeec
Confidence 4556776 88899999999999999999999985 4789999999999999999999988765 4599999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEec
Q 003268 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIID 412 (835)
.||++||.|..+.+++ ++.+.++++.++.|+.+..+ ++..+. +++|||++||+++.. .+.++.+.+||+|
T Consensus 97 sptreLa~qtlkvvkd-lgrgt~lr~s~~~ggD~~ee---qf~~l~-~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 97 SPTRELALQTLKVVKD-LGRGTKLRQSLLVGGDSIEE---QFILLN-ENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred cCcHHHHHHHHHHHHH-hccccchhhhhhcccchHHH---HHHHhc-cCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 9999999999999986 88888899998988876665 444444 458999999998864 3567889999999
Q ss_pred ccccc---chh--hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccc--eeEEecccCHHHHHHHH
Q 003268 413 EEQRF---GVK--QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLP--IKTHLSAFSKEKVISAI 485 (835)
Q Consensus 413 EaHr~---g~~--~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~--V~~~~~~~~~~~~~~~i 485 (835)
|++++ |+. ..+.+.+...+.|.++||||.+......+..|+.++.++...-..... .+.......++....++
T Consensus 172 Eadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaL 251 (529)
T KOG0337|consen 172 EADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAAL 251 (529)
T ss_pred hhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHH
Confidence 99984 553 356778888889999999998766667888898888877643222221 11111111222333444
Q ss_pred HHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCC
Q 003268 486 KYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 486 ~~~l~---~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~ 562 (835)
...+. ...+.++|+++..+++.+...|... ++.+..++|.|.+..|..-+.+|+.++..+||.|+++++|+|||-
T Consensus 252 l~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~--g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 252 LSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF--GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPL 329 (529)
T ss_pred HHHHhccccccceeEEecccchHHHHHHHHHhc--CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcc
Confidence 44332 2348999999999999999999988 889999999999999999999999999999999999999999999
Q ss_pred cCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+.||++|.|. ...-++||.||+.|+|+.|.+|.++.+.+.
T Consensus 330 ldnvinyd~p~-~~klFvhRVgr~aragrtg~aYs~V~~~~~ 370 (529)
T KOG0337|consen 330 LDNVINYDFPP-DDKLFVHRVGRVARAGRTGRAYSLVASTDD 370 (529)
T ss_pred ccccccccCCC-CCceEEEEecchhhccccceEEEEEecccc
Confidence 99999999987 778899999999999999999999987754
No 65
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-33 Score=337.14 Aligned_cols=376 Identities=19% Similarity=0.261 Sum_probs=296.7
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
..-++|+|+||||||++.-..++... ..+..+.++.|+|.-|...++++.++++..+|-.|+|..++.+...
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s------- 137 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVS------- 137 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCC-------
Confidence 35689999999999998665555543 3356899999999999999999999999988999999999876543
Q ss_pred HhcCCcceEecchHhhhc----ccccccccEEEecccccc------chhhHHH-HHhhcCCceEEEeecCCChhhHHHHH
Q 003268 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEK-IASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~------g~~~~e~-l~~~~~~~~vL~lSATp~p~tl~~~~ 450 (835)
.+..|-+.|.+.|.. +..++.+++|||||+|+= ....... +...+.+.++|+||||..... +.
T Consensus 138 ---~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~r---fs 211 (845)
T COG1643 138 ---PRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAER---FS 211 (845)
T ss_pred ---CCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHHH---HH
Confidence 457899999988754 455899999999999972 2222333 445555799999999996654 45
Q ss_pred hcCCCcceeeCCCCCccceeEEecccC-HHH-HHHHHHHHH-----hcCCeEEEEecCccChHHHHHHHHh-hC-CCCcE
Q 003268 451 TGFRDASLISTPPPERLPIKTHLSAFS-KEK-VISAIKYEL-----DRGGQVFYVLPRIKGLEEPMDFLQQ-AF-PGVDI 521 (835)
Q Consensus 451 ~~~~d~s~i~~~p~~r~~V~~~~~~~~-~~~-~~~~i~~~l-----~~ggqvlVf~~~v~~ie~l~~~L~~-~~-p~~~V 521 (835)
.++.+++++.+ +...+||+.++.... .+. +.+++...+ ...|.+|||+|..++++.+++.|.+ .+ +++.|
T Consensus 212 ~~f~~apvi~i-~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i 290 (845)
T COG1643 212 AYFGNAPVIEI-EGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEI 290 (845)
T ss_pred HHcCCCCEEEe-cCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEE
Confidence 55667888776 467799999884332 222 444444333 3359999999999999999999998 44 57899
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC---C--------------CHhHHHHHhc
Q 003268 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ---F--------------GLAQLYQLRG 584 (835)
Q Consensus 522 ~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~---~--------------sl~~l~Qr~G 584 (835)
.++||.|+.+++.++++.-..|..+|++||+|+|++|.||++..||+.+..+ | |-++..||.|
T Consensus 291 ~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaG 370 (845)
T COG1643 291 LPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAG 370 (845)
T ss_pred eeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhcc
Confidence 9999999999999999999999889999999999999999999999855431 1 3468899999
Q ss_pred ccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCC-CcccccccCCcccchHHHHHHHHH
Q 003268 585 RVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFG-TIFGEQQTGDVGNVGVDLFFEMLF 663 (835)
Q Consensus 585 RaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g-~~lg~~q~g~i~~vg~~~y~~~L~ 663 (835)
||||. .+|.||.+|+++++. .......++|.+.+. +|..+.++.+ |.+ ++......+.+....+..-.++|.
T Consensus 371 RAGR~-~pGicyRLyse~~~~-~~~~~t~PEIlrtdL--s~~vL~l~~~---G~~~d~~~f~fld~P~~~~i~~A~~~L~ 443 (845)
T COG1643 371 RAGRT-GPGICYRLYSEEDFL-AFPEFTLPEILRTDL--SGLVLQLKSL---GIGQDIAPFPFLDPPPEAAIQAALTLLQ 443 (845)
T ss_pred ccccC-CCceEEEecCHHHHH-hcccCCChhhhhcch--HHHHHHHHhc---CCCCCcccCccCCCCChHHHHHHHHHHH
Confidence 99998 589999999987766 666667788887765 6777777765 676 788787777777666665556665
Q ss_pred HHHHhhcCcccccccCcceEEeeecCCCCccccccccC
Q 003268 664 ESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 664 ~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
.+.++++... .|++|..|+.||+||.++.+++.+.+
T Consensus 444 -~LGAld~~g~-LT~lG~~ms~lpldprLA~mLl~a~~ 479 (845)
T COG1643 444 -ELGALDDSGK-LTPLGKQMSLLPLDPRLARMLLTAPE 479 (845)
T ss_pred -HcCCcCCCCC-CCHHHHHHHhCCCChHHHHHHHhccc
Confidence 5666665443 57899999999999999999998766
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.1e-33 Score=346.52 Aligned_cols=287 Identities=16% Similarity=0.174 Sum_probs=208.6
Q ss_pred EEccCCCccHHHHHHHHHHHHh-------------CCCEEEEEcccHHHHHHHHHHHHHhh----------cC-CCCcEE
Q 003268 308 ICGDVGFGKTEVALRAIFCVVS-------------AGKQAMVLAPTIVLAKQHFDVVSERF----------SK-YPDIKV 363 (835)
Q Consensus 308 I~g~TGsGKT~val~a~~~~~~-------------~g~qvlVLvPtr~La~Q~~~~~~~~f----------~~-~~gi~V 363 (835)
|++|||||||++|++|++..+. ++.+++||+|+++|+.|++++++..+ +. .++++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999998876652 24689999999999999999886422 11 247999
Q ss_pred EEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------cccccccEEEeccccccch-----h---hHHHHHhh-
Q 003268 364 GLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGV-----K---QKEKIASF- 428 (835)
Q Consensus 364 ~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~l~lVIIDEaHr~g~-----~---~~e~l~~~- 428 (835)
+..+|+.+..++.+.+ ...++|+|+||+.|... ..++++++|||||+|.+.. . ..+.|..+
T Consensus 81 ~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLT----RNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHHHHHHHh----cCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 9999998887765433 24589999999977431 2478999999999998732 1 23444444
Q ss_pred cCCceEEEeecCCChhhH-HHHHhcCCCcceeeCCCCC-ccceeEEecccCH-----------------------HHHHH
Q 003268 429 KISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPE-RLPIKTHLSAFSK-----------------------EKVIS 483 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~tl-~~~~~~~~d~s~i~~~p~~-r~~V~~~~~~~~~-----------------------~~~~~ 483 (835)
..+.|+|++|||..+... ...+.+ .++..+..++.. ..++...+...+. ..+..
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g-~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGG-DRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcC-CCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 457899999999865322 222222 222222222222 1222222211110 01223
Q ss_pred HHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC-------------------------------CCcEEEEcCCCCHHH
Q 003268 484 AIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP-------------------------------GVDIAIAHGQQYSRQ 532 (835)
Q Consensus 484 ~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p-------------------------------~~~V~~lHG~m~~~e 532 (835)
.+...+..+.++|||||++..+|.++..|.+..+ ...+.++||+|++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 3445556678999999999999999999876531 122678999999999
Q ss_pred HHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCC-CCceEEEEEec
Q 003268 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA-DKEAHAYLFYP 600 (835)
Q Consensus 533 re~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~-g~~G~ay~l~~ 600 (835)
|..+++.|++|++++||||+.++.||||+++++||+++.|. +.++|.||+||+||. |..+.++++..
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~-sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPL-SVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCC-CHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 99999999999999999999999999999999999999996 999999999999996 34456665443
No 67
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-32 Score=302.08 Aligned_cols=309 Identities=20% Similarity=0.274 Sum_probs=228.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
.+++.+|.......+. .|.|++.|||-|||.+|+.-+...+.. ++++++|+||+-|+.||++.|.+ +-..
T Consensus 14 ie~R~YQ~~i~a~al~--------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~-v~~i 84 (542)
T COG1111 14 IEPRLYQLNIAAKALF--------KNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRK-VTGI 84 (542)
T ss_pred ccHHHHHHHHHHHHhh--------cCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHH-HhCC
Confidence 4788999988777653 589999999999999988777755543 45899999999999999999997 5555
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEecccccc-chh----hHHHHHhh
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF-GVK----QKEKIASF 428 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~-g~~----~~e~l~~~ 428 (835)
|.-.++.++|..+..++...|. +.+|+|+||+.+.++ +++.++.++|+|||||. |.. ..+...+.
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~ 159 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS 159 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh
Confidence 5678999999999999998884 468999999877654 56788999999999995 332 22334455
Q ss_pred cCCceEEEeecCCChhhHH--HH-----------------------------------------------------HhcC
Q 003268 429 KISVDVLTLSATPIPRTLY--LA-----------------------------------------------------LTGF 453 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~tl~--~~-----------------------------------------------------~~~~ 453 (835)
..+..+|+|||||-..... .. +..+
T Consensus 160 ~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L 239 (542)
T COG1111 160 AKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPL 239 (542)
T ss_pred ccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999998421000 00 0000
Q ss_pred CCcceeeCCC-------------------C-Cc---------------------------cceeEE--------------
Q 003268 454 RDASLISTPP-------------------P-ER---------------------------LPIKTH-------------- 472 (835)
Q Consensus 454 ~d~s~i~~~p-------------------~-~r---------------------------~~V~~~-------------- 472 (835)
.+..++.... . .. .+...+
T Consensus 240 ~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk 319 (542)
T COG1111 240 KELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSK 319 (542)
T ss_pred HHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchH
Confidence 0000000000 0 00 000000
Q ss_pred -------------------------ecccCHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE-
Q 003268 473 -------------------------LSAFSKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA- 524 (835)
Q Consensus 473 -------------------------~~~~~~~~~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~l- 524 (835)
+..-.-+.+.+.+.+.+ ..+.+++||++.+++++.+.++|....+.+++.++
T Consensus 320 ~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiG 399 (542)
T COG1111 320 AAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIG 399 (542)
T ss_pred HHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEee
Confidence 00000112334444444 23468999999999999999999999777663333
Q ss_pred ------cCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEE
Q 003268 525 ------HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 598 (835)
Q Consensus 525 ------HG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l 598 (835)
..||++.++.+++++|++|+++|||||+++|.|+|||.++.||.|++-+ |.-..+||.||+||. +.|.+|++
T Consensus 400 Qa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp-SeIR~IQR~GRTGR~-r~Grv~vL 477 (542)
T COG1111 400 QASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP-SEIRSIQRKGRTGRK-RKGRVVVL 477 (542)
T ss_pred ccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc-HHHHHHHhhCccccC-CCCeEEEE
Confidence 2469999999999999999999999999999999999999999999987 888999999999997 89999999
Q ss_pred ecCCCc
Q 003268 599 YPDKSL 604 (835)
Q Consensus 599 ~~~~~~ 604 (835)
++..+.
T Consensus 478 vt~gtr 483 (542)
T COG1111 478 VTEGTR 483 (542)
T ss_pred EecCch
Confidence 998743
No 68
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-33 Score=300.21 Aligned_cols=325 Identities=22% Similarity=0.269 Sum_probs=261.3
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr 341 (835)
.+.+ +++.+..-++-.|+.+|++||..+.+ |.|+.+.+++|+|||.+|..+++..+.. ..||++++||+
T Consensus 32 ~L~e~LLrgiy~yGFekPSaIQqraI~p~i~-------G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtr 104 (397)
T KOG0327|consen 32 NLKESLLRGIYAYGFEKPSAIQQRAILPCIK-------GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR 104 (397)
T ss_pred CCCHHHHhHHHhhccCCchHHHhcccccccc-------CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchH
Confidence 4444 77888777777999999999988864 5799999999999999999998876532 46899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc-----ccccccEEEeccccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l-----~~~~l~lVIIDEaHr 416 (835)
+||.|..+.+.. ++.+.+++|..+.|+.+.......+ ..-.+.|++|||+++.+.+ ..+.+.+.|+||+++
T Consensus 105 eLa~qi~~v~~~-lg~~~~~~v~~~igg~~~~~~~~~i---~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 105 ELAQQIQKVVRA-LGDHMDVSVHACIGGTNVRREDQAL---LKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred HHHHHHHHHHHh-hhcccceeeeeecCcccchhhhhhh---hccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 999999977765 6666688999888877665333322 3334799999998887544 446688999999998
Q ss_pred c---ch-hh-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cceeEEecccCHHHHHHHHHHHH
Q 003268 417 F---GV-KQ-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSKEKVISAIKYEL 489 (835)
Q Consensus 417 ~---g~-~~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~~~~~~~~~i~~~l 489 (835)
+ |+ .+ ......++++.|++++|||.++..+......++++..+.....+. .-+..+.....++.....+....
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~ 260 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLY 260 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHH
Confidence 6 44 22 234456788999999999999999988888888877665532221 11222222222222444555555
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEe
Q 003268 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569 (835)
Q Consensus 490 ~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~ 569 (835)
.+-.|.++|||+.+.+..+...|... +..+..+||.|.+.+|+.++..|+.|..+|||+|+.+++|+|+.++..||+|
T Consensus 261 ~~~~q~~if~nt~r~v~~l~~~L~~~--~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 261 RRVTQAVIFCNTRRKVDNLTDKLRAH--GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred HhhhcceEEecchhhHHHHHHHHhhC--CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeee
Confidence 56789999999999999999999776 8999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 570 d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
+.|. +...|.||+||+||.|++|.+..++++++.
T Consensus 339 dlP~-~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 339 DLPA-RKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred cccc-chhhhhhhcccccccCCCceeeeeehHhhH
Confidence 9997 899999999999999999999999987654
No 69
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-33 Score=312.81 Aligned_cols=375 Identities=16% Similarity=0.200 Sum_probs=292.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH-HhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~-~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
+.-++|+|.||||||++.-..++.. ..+++.+-|..|+|+.|..++.++.+.++...|-.|++..+|.+...
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~------- 443 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTS------- 443 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCC-------
Confidence 4568899999999999865544432 22345788999999999999999999998888999999999876544
Q ss_pred HhcCCcceEecchHhhhc----ccccccccEEEecccccc------chhhHHHHHhhcCCceEEEeecCCChhhHHHHHh
Q 003268 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~------g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
....|-+.|.+.|.. +-.+..+++||+||||+- .+...+.+...+.+.++|.+|||+.... +..
T Consensus 444 ---~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~k---f~n 517 (1042)
T KOG0924|consen 444 ---EDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQK---FSN 517 (1042)
T ss_pred ---CceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHH---HHH
Confidence 345677888887753 345788999999999972 2233455555667999999999996554 344
Q ss_pred cCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC------C--
Q 003268 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF------P-- 517 (835)
Q Consensus 452 ~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l------~~ggqvlVf~~~v~~ie~l~~~L~~~~------p-- 517 (835)
++.+.+.+.+ |...+||.+.......++++++..... ...|+++||.+..+.+|..+..++..+ |
T Consensus 518 fFgn~p~f~I-pGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~ 596 (1042)
T KOG0924|consen 518 FFGNCPQFTI-PGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTT 596 (1042)
T ss_pred HhCCCceeee-cCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCC
Confidence 4556666655 577899999888777777777655432 335899999999999888887776543 4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC-----------------CCHhHHH
Q 003268 518 GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ-----------------FGLAQLY 580 (835)
Q Consensus 518 ~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~-----------------~sl~~l~ 580 (835)
++.|.+++++|+++-+.++++.-..|..+++|||+|+|+.+.||++.+||+.+..+ .|-++..
T Consensus 597 ~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred ceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 67899999999999999999999999999999999999999999999999865431 1346778
Q ss_pred HHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchH--HHH
Q 003268 581 QLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGV--DLF 658 (835)
Q Consensus 581 Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~--~~y 658 (835)
||.|||||.| +|.||.+|++..+..+......++|++++. +...|.++.| |..+++++.+.+.+..-++ .+|
T Consensus 677 QRaGRAGRt~-pG~cYRlYTe~ay~~eml~stvPEIqRTNl--~nvVLlLksl---gV~dll~FdFmD~Pped~~~~sly 750 (1042)
T KOG0924|consen 677 QRAGRAGRTG-PGTCYRLYTEDAYKNEMLPSTVPEIQRTNL--SNVVLLLKSL---GVDDLLKFDFMDPPPEDNLLNSLY 750 (1042)
T ss_pred hhccccCCCC-CcceeeehhhhHHHhhcccCCCchhhhcch--hhHHHHHHhc---ChhhhhCCCcCCCCHHHHHHHHHH
Confidence 9999999985 899999999998888888888999999876 6777777776 5678999988887754332 233
Q ss_pred HHHHHHHHHhhcCcccccccCcceEEeeecCCCCccccccccC
Q 003268 659 FEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLE 701 (835)
Q Consensus 659 ~~~L~~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~ 701 (835)
.-+. |.+++... ..|++|..|++||+||-+++.+|.+.+
T Consensus 751 ~Lw~---LGAl~~~g-~LT~lG~~MvefpLDP~lsKmll~a~~ 789 (1042)
T KOG0924|consen 751 QLWT---LGALDNTG-QLTPLGRKMVEFPLDPPLSKMLLMAAR 789 (1042)
T ss_pred HHHH---hhccccCC-ccchhhHHhhhCCCCchHHHHHHHHhc
Confidence 3333 34444433 357899999999999999998887643
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.7e-32 Score=303.27 Aligned_cols=290 Identities=20% Similarity=0.201 Sum_probs=198.1
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHh--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHH---------
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKA--------- 373 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~--------- 373 (835)
+++|+||||||||++|+.+++..+. .+.+++|++|+++|+.|++++++..|+. .++.+++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCch
Confidence 5799999999999999999987764 3579999999999999999999987753 344444432210
Q ss_pred HHHHHHHhHhc-----CCcceEecchHhhhcccc---------cc--cccEEEeccccccchhhHHH----HHhh-cCCc
Q 003268 374 EKEEHLDMIKH-----GHLNIIVGTHSLLGSRVV---------YN--NLGLLVVDEEQRFGVKQKEK----IASF-KISV 432 (835)
Q Consensus 374 e~~~~l~~l~~-----g~~dIIIgT~~~L~~~l~---------~~--~l~lVIIDEaHr~g~~~~e~----l~~~-~~~~ 432 (835)
........... -..+|+|+||+.+...+. +. ..++||+||+|.+....... +..+ ..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 00111111111 136799999987753221 11 23789999999985432211 2222 3578
Q ss_pred eEEEeecCCChhhHHHHHhcCCCcceeeCCCC-----CccceeEEecc-cCHHHHHHHHHHHHhcCCeEEEEecCccChH
Q 003268 433 DVLTLSATPIPRTLYLALTGFRDASLISTPPP-----ERLPIKTHLSA-FSKEKVISAIKYELDRGGQVFYVLPRIKGLE 506 (835)
Q Consensus 433 ~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~-----~r~~V~~~~~~-~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie 506 (835)
++++||||++...................+.. .+..+...... .........+.+.+..+++++||||+++.++
T Consensus 157 ~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~ 236 (358)
T TIGR01587 157 PILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQ 236 (358)
T ss_pred CEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHH
Confidence 99999999864332222221111111111100 11111111111 1122334445555667899999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcCCCCHHHHHH----HHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHH
Q 003268 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEE----TMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 507 ~l~~~L~~~~p~~~V~~lHG~m~~~ere~----vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr 582 (835)
.+++.|++..++..+..+||+|++.+|++ +++.|++|..+|||||+++++|+|++ +++||++..| +++|+||
T Consensus 237 ~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~---~~~~iqr 312 (358)
T TIGR01587 237 EFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP---IDSLIQR 312 (358)
T ss_pred HHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC---HHHHHHH
Confidence 99999998876668999999999999876 48999999999999999999999997 8899887654 6899999
Q ss_pred hcccCCCCCc----eEEEEEecCC
Q 003268 583 RGRVGRADKE----AHAYLFYPDK 602 (835)
Q Consensus 583 ~GRaGR~g~~----G~ay~l~~~~ 602 (835)
+||+||.|+. |.+|++....
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecC
Confidence 9999998743 4788887644
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.2e-31 Score=333.85 Aligned_cols=300 Identities=23% Similarity=0.270 Sum_probs=216.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
+.+-|.+.+.+.|||+|..+++.++. +.|+++++|||||||..++.++......+.+++||+||++|+.|+++
T Consensus 69 ~~~~f~~~~G~~pt~iQ~~~i~~il~-------g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 69 FEKFFKKKTGSKPWSLQRTWAKRLLL-------GESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHC-------CCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH
Confidence 34567777788999999999999874 57999999999999976555554445568999999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCC--HHHHHHHHHhHhcCCcceEecchHhhhcc---cccccccEEEeccccccc------
Q 003268 350 VVSERFSKYPDIKVGLLSRFQS--KAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFG------ 418 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s--~~e~~~~l~~l~~g~~dIIIgT~~~L~~~---l~~~~l~lVIIDEaHr~g------ 418 (835)
.++. ++...++.+..+.++.+ ..++.+....+..|.++|+|+||+.|.+. +...++++|||||||++.
T Consensus 142 ~l~~-l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 142 KLEK-FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHHH-HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccch
Confidence 9997 54444677777766543 45566677778888899999999998764 334569999999999853
Q ss_pred --------hh--hHHHH-Hhhc------------------------CCceEEEeecCCChhhHHHHHhcCCCcceeeCCC
Q 003268 419 --------VK--QKEKI-ASFK------------------------ISVDVLTLSATPIPRTLYLALTGFRDASLISTPP 463 (835)
Q Consensus 419 --------~~--~~e~l-~~~~------------------------~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p 463 (835)
+. ..+.+ ..++ ...+++++|||.+|++..... ++++-.+....
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l--~~~ll~~~v~~ 298 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL--FRELLGFEVGS 298 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH--hhccceEEecC
Confidence 32 11111 1111 157899999999887543211 11111111111
Q ss_pred --CCcccee-EEecccCHHHHHHHHHHHHhcCCeEEEEecCccC---hHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHH
Q 003268 464 --PERLPIK-THLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG---LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETM 537 (835)
Q Consensus 464 --~~r~~V~-~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~---ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl 537 (835)
.....+. .++...+....+..+...+ +.+++||||+... ++.+++.|... |+++..+||+| ++.+
T Consensus 299 ~~~~~rnI~~~yi~~~~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~--gi~v~~~hg~l-----~~~l 369 (1176)
T PRK09401 299 PVFYLRNIVDSYIVDEDSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDL--GINAELAISGF-----ERKF 369 (1176)
T ss_pred cccccCCceEEEEEcccHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHC--CCcEEEEeCcH-----HHHH
Confidence 1112232 2322212222222222222 4689999999888 99999999998 89999999999 3346
Q ss_pred HHhhcCCeeEEEE----CCcCccCCCCCC-cCEEEEecCCCC--CH---hHHHHHhcccCC
Q 003268 538 EKFAQGAIKILIC----TNIVESGLDIQN-ANTIIVQDVQQF--GL---AQLYQLRGRVGR 588 (835)
Q Consensus 538 ~~F~~g~~~VLVa----T~iie~GIDIp~-v~~VIi~d~p~~--sl---~~l~Qr~GRaGR 588 (835)
++|++|+++|||| |++++||||+|+ +++||+++.|.| ++ ..+.||.||+-.
T Consensus 370 ~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 370 EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999999 699999999999 899999999974 22 468899999863
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=302.13 Aligned_cols=323 Identities=23% Similarity=0.277 Sum_probs=239.9
Q ss_pred CCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH-HhCCCEEEEEcccHHHH
Q 003268 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 267 ~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~-~~~g~qvlVLvPtr~La 344 (835)
.++ +..-++..+.-+++|.|.-|++.- +.+ +.|.+++.+|+||||++.-++-+.. +..|++.++|||..+||
T Consensus 201 ipe~fk~~lk~~G~~eLlPVQ~laVe~G---LLe---G~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALA 274 (830)
T COG1202 201 IPEKFKRMLKREGIEELLPVQVLAVEAG---LLE---GENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALA 274 (830)
T ss_pred CcHHHHHHHHhcCcceecchhhhhhhhc---ccc---CCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhh
Confidence 344 566677777889999999997654 334 6899999999999999997776654 45589999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchH----hhhcccccccccEEEeccccccch-
Q 003268 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS----LLGSRVVYNNLGLLVVDEEQRFGV- 419 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~----~L~~~l~~~~l~lVIIDEaHr~g~- 419 (835)
+|.|+.|++++++. |+++.+-.|..-...+......-..-.+||||||++ +|.....+.++|.|||||+|.+..
T Consensus 275 NQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 275 NQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred cchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence 99999999999877 788877776433222221122223346899999986 334446689999999999998632
Q ss_pred ----h---hHHHHHhhcCCceEEEeecCC-ChhhHHHHHhcCCCcceeeCCCCCccceeEEecccC-H----HHHHHHHH
Q 003268 420 ----K---QKEKIASFKISVDVLTLSATP-IPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFS-K----EKVISAIK 486 (835)
Q Consensus 420 ----~---~~e~l~~~~~~~~vL~lSATp-~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~-~----~~~~~~i~ 486 (835)
. ....++.+.+..|.|.+|||. +|..+... .+..++... ....|+..++.... . +.+...+.
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~----l~a~lV~y~-~RPVplErHlvf~~~e~eK~~ii~~L~k 428 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKK----LGAKLVLYD-ERPVPLERHLVFARNESEKWDIIARLVK 428 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHH----hCCeeEeec-CCCCChhHeeeeecCchHHHHHHHHHHH
Confidence 2 234566677899999999997 34333222 233333321 11233333333222 1 22223333
Q ss_pred HHHh------cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 487 YELD------RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 487 ~~l~------~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
++.. -.||++||.++++.|..++..|... |+++.++|++|+..+|..+...|.++++.++|+|..++.|+|+
T Consensus 429 ~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k--G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDF 506 (830)
T COG1202 429 REFSTESSKGYRGQTIVFTYSRRRCHELADALTGK--GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDF 506 (830)
T ss_pred HHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC--CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCC
Confidence 3332 1389999999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred CCcCEEEEe----cCCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003268 561 QNANTIIVQ----DVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 561 p~v~~VIi~----d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
| ++.||.. +....++.+|.|+.|||||.+ ..|.+|+++.+...
T Consensus 507 P-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 507 P-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred c-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 9 7888753 334347899999999999987 67999999876543
No 73
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-32 Score=295.27 Aligned_cols=371 Identities=16% Similarity=0.217 Sum_probs=286.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHH-HHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFC-VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~-~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
+.-++++|+||||||.+.-..+.. .......|++..|.|..|.+++.++.+.+.-..|-.|++..++.++...++.++.
T Consensus 62 nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky 141 (699)
T KOG0925|consen 62 NQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKY 141 (699)
T ss_pred CceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChhHHHHH
Confidence 466889999999999985444333 3334578999999999999999999999988788999999999998887777764
Q ss_pred HhcCCcceEecchHhhhc----ccccccccEEEeccccccch------hhHHHHHhhcCCceEEEeecCCChhhHHHHHh
Q 003268 382 IKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~g~------~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
+|.++|.. +..+..+++||+||||+-.. ...+.+...+++.++|.||||.... .+..
T Consensus 142 ----------~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~ 208 (699)
T KOG0925|consen 142 ----------CTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQR 208 (699)
T ss_pred ----------hcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHH
Confidence 45556643 34578999999999997311 1133344445899999999998544 3567
Q ss_pred cCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHH------hcCCeEEEEecCccChHHHHHHHHhhC-------CC
Q 003268 452 GFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL------DRGGQVFYVLPRIKGLEEPMDFLQQAF-------PG 518 (835)
Q Consensus 452 ~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l------~~ggqvlVf~~~v~~ie~l~~~L~~~~-------p~ 518 (835)
++.+++++.++. ..|++.++....+.+.+++..+.+ +..|++++|++..++++..++.+.... ..
T Consensus 209 yf~n~Pll~vpg--~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~ 286 (699)
T KOG0925|consen 209 YFGNAPLLAVPG--THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGP 286 (699)
T ss_pred HhCCCCeeecCC--CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCC
Confidence 788999998864 889988877666555655554433 457999999999999999988876432 23
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcC-----CeeEEEECCcCccCCCCCCcCEEEEecCC-----------------CCCH
Q 003268 519 VDIAIAHGQQYSRQLEETMEKFAQG-----AIKILICTNIVESGLDIQNANTIIVQDVQ-----------------QFGL 576 (835)
Q Consensus 519 ~~V~~lHG~m~~~ere~vl~~F~~g-----~~~VLVaT~iie~GIDIp~v~~VIi~d~p-----------------~~sl 576 (835)
.+|.++| +.++..+++..... ..+|+|+|++++..+.++++.+||+.+.. ..|-
T Consensus 287 l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISk 362 (699)
T KOG0925|consen 287 LKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISK 362 (699)
T ss_pred ceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchH
Confidence 6888988 44556665544322 47899999999999999999999985532 1255
Q ss_pred hHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHH
Q 003268 577 AQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVD 656 (835)
Q Consensus 577 ~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~ 656 (835)
++..||+||+||. ++|.||.+|+++.+..+.....-++|.+.+. +...+.++.+.|.+.+.+ .+++..+.+
T Consensus 363 asA~qR~gragrt-~pGkcfrLYte~~~~~em~~~typeilrsNL--~s~VL~LKklgI~dlvhf------dfmDpPAPE 433 (699)
T KOG0925|consen 363 ASAQQRAGRAGRT-RPGKCFRLYTEEAFEKEMQPQTYPEILRSNL--SSTVLQLKKLGIDDLVHF------DFMDPPAPE 433 (699)
T ss_pred hHHHHHhhhccCC-CCCceEEeecHHhhhhcCCCCCcHHHHHHhh--HHHHHHHHhcCcccccCC------cCCCCCChH
Confidence 7899999999997 7999999999988777777777778887776 678888999888777665 566677888
Q ss_pred HHHHHHHH--HHHhhcCcccccccCcceEEeeecCCCCccccccccCC
Q 003268 657 LFFEMLFE--SLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLEN 702 (835)
Q Consensus 657 ~y~~~L~~--ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~ 702 (835)
.+++.|++ .+.+++++.. .+++|..|++||+||.+++++|.+.+-
T Consensus 434 tLMrALE~LnYLaaLdDdGn-LT~lG~imSEFPLdPqLAkmLi~S~ef 480 (699)
T KOG0925|consen 434 TLMRALEVLNYLAALDDDGN-LTSLGEIMSEFPLDPQLAKMLIGSCEF 480 (699)
T ss_pred HHHHHHHHhhhhhhhCCCcc-cchhhhhhhcCCCChHHHHHHhhcCCC
Confidence 88887775 5566666554 468999999999999999999998653
No 74
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.4e-31 Score=336.07 Aligned_cols=311 Identities=21% Similarity=0.232 Sum_probs=229.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
+.+-|++.++|+||+.|.++++.+++ ++|++++||||+|||++++.+++....+|.+++|++||++|+.|+++
T Consensus 68 ~~~~f~~~~G~~pt~iQ~~~i~~il~-------G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 68 FEEFFEKITGFEFWSIQKTWAKRILR-------GKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHc-------CCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHH
Confidence 44566666788999999999999985 57999999999999997666666555578899999999999999999
Q ss_pred HHHHhhcCC-CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc---cccccEEEecccccc--------
Q 003268 350 VVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV---YNNLGLLVVDEEQRF-------- 417 (835)
Q Consensus 350 ~~~~~f~~~-~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~---~~~l~lVIIDEaHr~-------- 417 (835)
.++...... .++++..++|+.+..++...++.+.+|.++|+|+||++|.+.+. ..+++++||||||++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccc
Confidence 998744332 25788899999998888888888999999999999998875422 257899999999986
Q ss_pred ------chhh--HH----HHH----------------------hhcCCce-EEEeecCCChhhHHHHHhcCCCcceeeCC
Q 003268 418 ------GVKQ--KE----KIA----------------------SFKISVD-VLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 418 ------g~~~--~e----~l~----------------------~~~~~~~-vL~lSATp~p~tl~~~~~~~~d~s~i~~~ 462 (835)
|+.. .+ .+. .++...+ ++++|||..++.....+ ++++..+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l--~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL--YRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH--hhcCeEEEec
Confidence 3311 11 110 1123334 57799999875332211 2333333332
Q ss_pred CC---CccceeEEecccCHHHHHHHHHHHHh-cCCeEEEEecCccCh---HHHHHHHHhhCCCCcEEEEcCCCCHHHHHH
Q 003268 463 PP---ERLPIKTHLSAFSKEKVISAIKYELD-RGGQVFYVLPRIKGL---EEPMDFLQQAFPGVDIAIAHGQQYSRQLEE 535 (835)
Q Consensus 463 p~---~r~~V~~~~~~~~~~~~~~~i~~~l~-~ggqvlVf~~~v~~i---e~l~~~L~~~~p~~~V~~lHG~m~~~ere~ 535 (835)
.. .+..++.++.. ..... ..+.+.+. .+.+.+|||++.+.+ +.+++.|... |+++..+||+ |..
T Consensus 299 ~~~~~lr~i~~~yi~~-~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~--Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 299 SGRSALRNIVDVYLNP-EKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLED--GFKIELVSAK-----NKK 369 (1638)
T ss_pred CCCCCCCCcEEEEEEC-CHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHC--CCeEEEecch-----HHH
Confidence 21 12223333322 22211 22333222 256889999998765 8899999998 9999999995 889
Q ss_pred HHHHhhcCCeeEEEEC----CcCccCCCCCC-cCEEEEecCCC--CCHhHHHHHh-------------cccCCCCCceEE
Q 003268 536 TMEKFAQGAIKILICT----NIVESGLDIQN-ANTIIVQDVQQ--FGLAQLYQLR-------------GRVGRADKEAHA 595 (835)
Q Consensus 536 vl~~F~~g~~~VLVaT----~iie~GIDIp~-v~~VIi~d~p~--~sl~~l~Qr~-------------GRaGR~g~~G~a 595 (835)
++++|++|+++||||| ++++||||+|+ |++||++|+|+ |++..|+|-. ||+||.|..+.|
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 9999999999999999 59999999999 99999999997 4666555554 999999988888
Q ss_pred EEE
Q 003268 596 YLF 598 (835)
Q Consensus 596 y~l 598 (835)
+..
T Consensus 450 ~~~ 452 (1638)
T PRK14701 450 VLD 452 (1638)
T ss_pred HHH
Confidence 743
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.8e-30 Score=306.43 Aligned_cols=316 Identities=17% Similarity=0.173 Sum_probs=220.3
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
.+.++|+|.+|+..+.. .......+|+.|||+|||++++.++... ++++|||||+++|+.||.++|.. |...
T Consensus 253 ~~~LRpYQ~eAl~~~~~----~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~-~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKM-WSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHh----cCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHH-hcCC
Confidence 47899999999988753 2223467999999999999998776543 57899999999999999999987 4444
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-------------cccccccEEEeccccccchhhHHHH
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------------VVYNNLGLLVVDEEQRFGVKQKEKI 425 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-------------l~~~~l~lVIIDEaHr~g~~~~e~l 425 (835)
+...+..++|..... ..+..+|+|+|++++... +.-..+++||+||+|++.......+
T Consensus 325 ~~~~I~~~tg~~k~~---------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~i 395 (732)
T TIGR00603 325 DDSQICRFTSDAKER---------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRV 395 (732)
T ss_pred CCceEEEEecCcccc---------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHH
Confidence 446777777642110 013468999999988531 1124789999999999977665544
Q ss_pred HhhcCCceEEEeecCCChhhHHH-HHhcCCCcceeeCCC-----CC-ccceeE--EecccCH------------------
Q 003268 426 ASFKISVDVLTLSATPIPRTLYL-ALTGFRDASLISTPP-----PE-RLPIKT--HLSAFSK------------------ 478 (835)
Q Consensus 426 ~~~~~~~~vL~lSATp~p~tl~~-~~~~~~d~s~i~~~p-----~~-r~~V~~--~~~~~~~------------------ 478 (835)
...-.....|+|||||....-.. .+..+..+.+...+. .+ -.++.. ...+...
T Consensus 396 l~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~ 475 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLY 475 (732)
T ss_pred HHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHh
Confidence 43334556899999995322111 111111222211100 00 001110 0011110
Q ss_pred ---HHHHHHH---HHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC-CeeEEEE
Q 003268 479 ---EKVISAI---KYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILIC 550 (835)
Q Consensus 479 ---~~~~~~i---~~~l-~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g-~~~VLVa 550 (835)
.....++ .+.. .++.++||||+++..++.+++.|. +..+||++++.+|+++++.|++| .+++||+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-------KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-------CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 0111222 2221 367899999999888777777662 45689999999999999999875 8899999
Q ss_pred CCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceE-------EEEEecCCCcCCHHHHHHHHHHHH
Q 003268 551 TNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAH-------AYLFYPDKSLLSDQALERLAALEE 618 (835)
Q Consensus 551 T~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~-------ay~l~~~~~~~~~~a~~rl~~i~~ 618 (835)
|+++.+|||+|++++||+++.+.-+..+|.||+||++|.+..|. .|.|+++++.....+.+|-.-+.+
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~ 623 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVD 623 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999873378999999999999875444 499999998888888888666644
No 76
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.9e-30 Score=300.54 Aligned_cols=309 Identities=18% Similarity=0.145 Sum_probs=222.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.........|+|+|..+++.++. ++ |..+.||+|||++|.+|++.....|++|+|++||++||.|.++.+.
T Consensus 95 a~~R~lg~~p~~VQ~~~~~~ll~-------G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~ 165 (656)
T PRK12898 95 ASGRVLGQRHFDVQLMGGLALLS-------GR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMR 165 (656)
T ss_pred HHHHHhCCCCChHHHHHHHHHhC-------CC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHH
Confidence 34456678999999999999874 23 9999999999999999999888889999999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hcccc-------------------------
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVV------------------------- 402 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l~------------------------- 402 (835)
..+. +.|++|+++.++.+..++... . .+||+|||..-+ .+.+.
T Consensus 166 ~l~~-~lGlsv~~i~gg~~~~~r~~~-----y-~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (656)
T PRK12898 166 PLYE-ALGLTVGCVVEDQSPDERRAA-----Y-GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQL 238 (656)
T ss_pred HHHh-hcCCEEEEEeCCCCHHHHHHH-----c-CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhh
Confidence 8554 458999999998775543322 2 389999998644 22222
Q ss_pred -cccccEEEecccccc------------c---hh---------------------------------------hHHH---
Q 003268 403 -YNNLGLLVVDEEQRF------------G---VK---------------------------------------QKEK--- 424 (835)
Q Consensus 403 -~~~l~lVIIDEaHr~------------g---~~---------------------------------------~~e~--- 424 (835)
.+.+.++||||+|.+ | .. ..+.
T Consensus 239 v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~ 318 (656)
T PRK12898 239 LLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAE 318 (656)
T ss_pred cccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhC
Confidence 245788999999931 0 00 0000
Q ss_pred -------------------HHh---h------------------------------------------------------
Q 003268 425 -------------------IAS---F------------------------------------------------------ 428 (835)
Q Consensus 425 -------------------l~~---~------------------------------------------------------ 428 (835)
+.. +
T Consensus 319 ~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~ 398 (656)
T PRK12898 319 SLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLAR 398 (656)
T ss_pred cchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeee
Confidence 000 0
Q ss_pred -------cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC-ccceeEEecccCHHHHHHHHHHHH----hcCCeEE
Q 003268 429 -------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE-RLPIKTHLSAFSKEKVISAIKYEL----DRGGQVF 496 (835)
Q Consensus 429 -------~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~-r~~V~~~~~~~~~~~~~~~i~~~l----~~ggqvl 496 (835)
+...++.+||||.......+...+..++..|.+..+. +.....++.. +......++...+ ..+.++|
T Consensus 399 It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~-t~~~K~~aL~~~i~~~~~~~~pvL 477 (656)
T PRK12898 399 ITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFL-TAAAKWAAVAARVRELHAQGRPVL 477 (656)
T ss_pred ehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEe-CHHHHHHHHHHHHHHHHhcCCCEE
Confidence 0012455678887655444444444444444443222 2211222222 2222333444444 3367899
Q ss_pred EEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC---CcC-----EEEE
Q 003268 497 YVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ---NAN-----TIIV 568 (835)
Q Consensus 497 Vf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp---~v~-----~VIi 568 (835)
|||++++.++.+++.|... ++.+.++||++. +++..+..|..+...|+|||+++++|+||+ +|. +||+
T Consensus 478 Ift~t~~~se~L~~~L~~~--gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~ 553 (656)
T PRK12898 478 VGTRSVAASERLSALLREA--GLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL 553 (656)
T ss_pred EEeCcHHHHHHHHHHHHHC--CCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE
Confidence 9999999999999999998 899999999865 455555566666667999999999999999 666 9999
Q ss_pred ecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 569 QDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 569 ~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++.|. +...|.||+||+||.|.+|.|++|++.++
T Consensus 554 ~d~P~-s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 TERHD-SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cCCCC-CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 99997 88999999999999999999999998653
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=4.3e-29 Score=305.32 Aligned_cols=309 Identities=21% Similarity=0.306 Sum_probs=220.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
...+++++|.+++..++. .|.|+++|||+|||.+|+.++...+. .+++++|++||++|+.|+.+.++..++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~--------~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALK--------KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhc--------CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 456899999999887753 37999999999999999887776553 468999999999999999999987553
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccchh-h----HHHHH
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVK-Q----KEKIA 426 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g~~-~----~e~l~ 426 (835)
.++.++..++|..+..++...+. ..+|+|+||+.+.. .+.+.++++|||||||+.... . .....
T Consensus 84 -~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 84 -IPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred -CCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 33468888888877766554442 37899999987753 456788999999999996321 1 12222
Q ss_pred hhcCCceEEEeecCCChhhH--HHHHhcC--CCc-----------------c--eeeC----------------------
Q 003268 427 SFKISVDVLTLSATPIPRTL--YLALTGF--RDA-----------------S--LIST---------------------- 461 (835)
Q Consensus 427 ~~~~~~~vL~lSATp~p~tl--~~~~~~~--~d~-----------------s--~i~~---------------------- 461 (835)
.......+++|||||..... ......+ ... . .+..
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~ 237 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLK 237 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 33345679999999942210 0000000 000 0 0000
Q ss_pred -------CCCCc--cc----------eeEEe-------------------------------------------------
Q 003268 462 -------PPPER--LP----------IKTHL------------------------------------------------- 473 (835)
Q Consensus 462 -------~p~~r--~~----------V~~~~------------------------------------------------- 473 (835)
.+... .. +...+
T Consensus 238 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~ 317 (773)
T PRK13766 238 KLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSS 317 (773)
T ss_pred HHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcccc
Confidence 00000 00 00000
Q ss_pred --------------------------cccCH-HHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 003268 474 --------------------------SAFSK-EKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 474 --------------------------~~~~~-~~~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~l 524 (835)
....+ +.+.+.+.+.+ ..+++++|||++.+.++.+++.|... ++.+..+
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~--~~~~~~~ 395 (773)
T PRK13766 318 GGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE--GIKAVRF 395 (773)
T ss_pred CCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC--CCceEEE
Confidence 00000 01112222222 35689999999999999999999776 7888888
Q ss_pred cCC--------CCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEE
Q 003268 525 HGQ--------QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 596 (835)
Q Consensus 525 HG~--------m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay 596 (835)
||+ |++.+|..++.+|++|+.+|||||+++++|+|+|++++||+||++. +...++||+||+||.+ .|.+|
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~-s~~r~iQR~GR~gR~~-~~~v~ 473 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP-SEIRSIQRKGRTGRQE-EGRVV 473 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC-CHHHHHHHhcccCcCC-CCEEE
Confidence 886 9999999999999999999999999999999999999999999984 9999999999999985 58999
Q ss_pred EEecCCCc
Q 003268 597 LFYPDKSL 604 (835)
Q Consensus 597 ~l~~~~~~ 604 (835)
+++...+.
T Consensus 474 ~l~~~~t~ 481 (773)
T PRK13766 474 VLIAKGTR 481 (773)
T ss_pred EEEeCCCh
Confidence 99987654
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=8.7e-30 Score=317.72 Aligned_cols=286 Identities=23% Similarity=0.280 Sum_probs=206.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
+.+-|.+...+.|+|+|+.+++.++. +.|++++||||||||..++..+......+++++|++||++||.|+++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~-------G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLR-------GDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhC-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHH
Confidence 44556666778999999999999874 57999999999999985544444444568899999999999999999
Q ss_pred HHHHhhcCCCCcE---EEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc-cc-cccEEEeccccccc------
Q 003268 350 VVSERFSKYPDIK---VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-YN-NLGLLVVDEEQRFG------ 418 (835)
Q Consensus 350 ~~~~~f~~~~gi~---V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~-~~-~l~lVIIDEaHr~g------ 418 (835)
.++..+... ++. +++++|+.+..++...+..+.+|.++|+|+||+.|.+.+. +. +++++||||||+|.
T Consensus 140 ~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 140 KISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccH
Confidence 998744332 443 4467888888888888888888889999999999976432 22 78999999999863
Q ss_pred --------hhh--HHHH-----------------------HhhcCCce--EEEeecCCChhhHHHHHhcCCCcceeeCCC
Q 003268 419 --------VKQ--KEKI-----------------------ASFKISVD--VLTLSATPIPRTLYLALTGFRDASLISTPP 463 (835)
Q Consensus 419 --------~~~--~e~l-----------------------~~~~~~~~--vL~lSATp~p~tl~~~~~~~~d~s~i~~~p 463 (835)
+.. .+.+ ...+...+ ++++|||+.|+.....+ ++++..+....
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--~r~ll~~~v~~ 296 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--FRELLGFEVGG 296 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH--cccccceEecC
Confidence 321 1111 11223333 56789997666543211 22222222211
Q ss_pred CC--ccceeE-EecccC-HHHHHHHHHHHHhcCCeEEEEecCc---cChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHH
Q 003268 464 PE--RLPIKT-HLSAFS-KEKVISAIKYELDRGGQVFYVLPRI---KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEET 536 (835)
Q Consensus 464 ~~--r~~V~~-~~~~~~-~~~~~~~i~~~l~~ggqvlVf~~~v---~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~v 536 (835)
.. ...+.. ++.... ...+.+.+ +.+ +.+++|||++. +.++.+++.|... |+++..+||+|+ +.+
T Consensus 297 ~~~~~r~I~~~~~~~~~~~~~L~~ll-~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~--g~~a~~lhg~~~----~~~ 367 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDEDLKETLLEIV-KKL--GTGGIVYVSIDYGKEKAEEIAEFLENH--GVKAVAYHATKP----KED 367 (1171)
T ss_pred ccccccceEEEEEecccHHHHHHHHH-HHc--CCCEEEEEeccccHHHHHHHHHHHHhC--CceEEEEeCCCC----HHH
Confidence 11 112222 222222 22232322 222 56799999998 8899999999987 899999999997 378
Q ss_pred HHHhhcCCeeEEEE----CCcCccCCCCCC-cCEEEEecCCCC
Q 003268 537 MEKFAQGAIKILIC----TNIVESGLDIQN-ANTIIVQDVQQF 574 (835)
Q Consensus 537 l~~F~~g~~~VLVa----T~iie~GIDIp~-v~~VIi~d~p~~ 574 (835)
+++|++|+++|||| |++++||||+|+ +++||++|+|+|
T Consensus 368 l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 368 YEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred HHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 99999999999999 599999999999 899999999975
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.97 E-value=2.3e-29 Score=295.55 Aligned_cols=310 Identities=18% Similarity=0.204 Sum_probs=224.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+........|++.|..+...+.. ..|..++||+|||++|.+|++.....|++|.|++||.+||.|+++.+.
T Consensus 48 a~~R~lg~~p~~vQlig~~~l~~---------G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~ 118 (745)
T TIGR00963 48 ASKRVLGMRPFDVQLIGGIALHK---------GKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMG 118 (745)
T ss_pred HHHHHhCCCccchHHhhhhhhcC---------CceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHH
Confidence 34455677899999998776532 249999999999999999997555678899999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-h----c-------ccccccccEEEeccccccch-
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----S-------RVVYNNLGLLVVDEEQRFGV- 419 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-~----~-------~l~~~~l~lVIIDEaHr~g~- 419 (835)
..+. +.|++|+++.++.+..++...+ .++|++|||+.| + + .+.+++++++||||+|+|+.
T Consensus 119 ~l~~-~LGLsv~~i~g~~~~~~r~~~y------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LID 191 (745)
T TIGR00963 119 QVYR-FLGLSVGLILSGMSPEERREAY------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILID 191 (745)
T ss_pred HHhc-cCCCeEEEEeCCCCHHHHHHhc------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHH
Confidence 8554 4589999999988876554433 379999999976 2 1 24578999999999998654
Q ss_pred hhHHHHHhhc--CCceEEEeecCCChhh----------------------------------------------------
Q 003268 420 KQKEKIASFK--ISVDVLTLSATPIPRT---------------------------------------------------- 445 (835)
Q Consensus 420 ~~~e~l~~~~--~~~~vL~lSATp~p~t---------------------------------------------------- 445 (835)
.++..+.... .....+.++|||++++
T Consensus 192 eaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~ 271 (745)
T TIGR00963 192 EARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALK 271 (745)
T ss_pred hhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHH
Confidence 2222211110 0111122222222211
Q ss_pred --------------------------------------------------------------------------------
Q 003268 446 -------------------------------------------------------------------------------- 445 (835)
Q Consensus 446 -------------------------------------------------------------------------------- 445 (835)
T Consensus 272 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 351 (745)
T TIGR00963 272 AKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAK 351 (745)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcH
Confidence
Q ss_pred -HHHHHhcCCCcceeeCCCCC---ccceeEEecccCHH---HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC
Q 003268 446 -LYLALTGFRDASLISTPPPE---RLPIKTHLSAFSKE---KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 518 (835)
Q Consensus 446 -l~~~~~~~~d~s~i~~~p~~---r~~V~~~~~~~~~~---~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~ 518 (835)
....+....+..++.+|+.. |......+.....+ .+.+.+.+....+.++||||++++.++.+++.|.+. +
T Consensus 352 te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~--g 429 (745)
T TIGR00963 352 TEEEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER--G 429 (745)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--C
Confidence 11111112222333333221 11111122111112 233444444577899999999999999999999998 8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCC-------cCEEEEecCCCCCHhHHHHHhcccCCCCC
Q 003268 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN-------ANTIIVQDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 519 ~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~-------v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
+....+||+ +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|. +...+.|++||+||.|.
T Consensus 430 i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~-s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 430 IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE-SRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC-cHHHHHHHhccccCCCC
Confidence 899999998 789999999999999999999999999999998 55999999997 89999999999999999
Q ss_pred ceEEEEEecCCC
Q 003268 592 EAHAYLFYPDKS 603 (835)
Q Consensus 592 ~G~ay~l~~~~~ 603 (835)
+|.+.+|++.++
T Consensus 507 ~G~s~~~ls~eD 518 (745)
T TIGR00963 507 PGSSRFFLSLED 518 (745)
T ss_pred CcceEEEEeccH
Confidence 999999988664
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=3.5e-29 Score=279.54 Aligned_cols=284 Identities=20% Similarity=0.229 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC---CCc
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY---PDI 361 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~---~gi 361 (835)
+|.+|++.+.++ ...++++++|||||||++|+.+++. .+.++++++|+++|+.|+++++.+.+..+ .++
T Consensus 1 hQ~~~~~~~~~~-----~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSK-----DADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcC-----CCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 599999998741 1235889999999999999988874 35578999999999999999999877543 256
Q ss_pred EEEEecCCCCHHHHHHH-----------------HHhHhcCCcceEecchHhhhccc-------------ccccccEEEe
Q 003268 362 KVGLLSRFQSKAEKEEH-----------------LDMIKHGHLNIIVGTHSLLGSRV-------------VYNNLGLLVV 411 (835)
Q Consensus 362 ~V~~l~g~~s~~e~~~~-----------------l~~l~~g~~dIIIgT~~~L~~~l-------------~~~~l~lVII 411 (835)
.+..++|....+ .+.. ...+....++|+++||+.+...+ .+.++++||+
T Consensus 73 ~v~~~~g~~~~d-~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 73 NLLHVSKATLKD-IKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred eEEEecCCchHH-HHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 777777752221 1000 11122345889999998764210 1478999999
Q ss_pred ccccccchhh----------HHHHHhhcCCceEEEeecCCChhhHHHHHhc--CCCccee-eCC--------------CC
Q 003268 412 DEEQRFGVKQ----------KEKIASFKISVDVLTLSATPIPRTLYLALTG--FRDASLI-STP--------------PP 464 (835)
Q Consensus 412 DEaHr~g~~~----------~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~--~~d~s~i-~~~--------------p~ 464 (835)
||+|.++..+ ...+.......++++||||+++......... +...... .-. +.
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 9999875322 1122222345799999999977644333221 2221111 000 00
Q ss_pred -Cc----cceeEEeccc--CHHH----HHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHH
Q 003268 465 -ER----LPIKTHLSAF--SKEK----VISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSR 531 (835)
Q Consensus 465 -~r----~~V~~~~~~~--~~~~----~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ 531 (835)
+. .++...+... .... +.+.+.+.+ ..+++++||||++..++.+++.|++...++.+..+||.+++.
T Consensus 232 ~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~ 311 (357)
T TIGR03158 232 QSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKK 311 (357)
T ss_pred cccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHH
Confidence 00 1233322221 1111 222233323 246799999999999999999999864356788999999999
Q ss_pred HHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccC
Q 003268 532 QLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 532 ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaG 587 (835)
+|+++ ++.+|||||+++++|||+|++ .|| ++ |. +.++|+||+||+|
T Consensus 312 ~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~-~~~~yiqR~GR~g 357 (357)
T TIGR03158 312 DRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-AR-DAAAFWQRLGRLG 357 (357)
T ss_pred HHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CC-CHHHHhhhcccCC
Confidence 88765 378999999999999999976 565 45 43 7899999999997
No 81
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.4e-29 Score=297.26 Aligned_cols=307 Identities=19% Similarity=0.236 Sum_probs=224.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.........|++.|..++..+.. | .|+.+.||+|||++|++|++.....|++|+|++||++||.|+++.+.
T Consensus 70 a~~R~~g~~p~~vQl~~~~~l~~-------G--~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 70 AAKRVLGMRPYDVQLIGALVLHE-------G--NIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred HHHHHhCCCCchHHHHhHHHHcC-------C--ceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHH
Confidence 33445677899999999776532 2 39999999999999999998777789999999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCC-HHHHHHHHHhHhcCCcceEecchHhh-----hccc-------ccccccEEEecccccc--
Q 003268 353 ERFSKYPDIKVGLLSRFQS-KAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF-- 417 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s-~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l-------~~~~l~lVIIDEaHr~-- 417 (835)
..+. +.|++|+++.|+.+ ..++... ..+||++|||+.| .+.+ .++.+.++||||+|++
T Consensus 141 ~l~~-~lGl~v~~i~g~~~~~~~r~~~------y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi 213 (790)
T PRK09200 141 QVYE-FLGLTVGLNFSDIDDASEKKAI------YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL 213 (790)
T ss_pred HHHh-hcCCeEEEEeCCCCcHHHHHHh------cCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee
Confidence 8554 45899999999887 5554432 2389999999877 2322 3477899999999952
Q ss_pred ----------ch--------hh--------------------------------HHH----------------------H
Q 003268 418 ----------GV--------KQ--------------------------------KEK----------------------I 425 (835)
Q Consensus 418 ----------g~--------~~--------------------------------~e~----------------------l 425 (835)
|. .. .+. +
T Consensus 214 Dea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 293 (790)
T PRK09200 214 DEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILAL 293 (790)
T ss_pred ccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHH
Confidence 00 00 000 0
Q ss_pred Hhh---c-------------------------------------------------------------CCceEEEeecCC
Q 003268 426 ASF---K-------------------------------------------------------------ISVDVLTLSATP 441 (835)
Q Consensus 426 ~~~---~-------------------------------------------------------------~~~~vL~lSATp 441 (835)
... . ...++.+||+|.
T Consensus 294 ~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa 373 (790)
T PRK09200 294 RAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTA 373 (790)
T ss_pred HHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCC
Confidence 000 0 012344566664
Q ss_pred ChhhHHHHHhcCCCcceeeCCCCC---ccceeEEecccCHHHHHHHHHHHH----hcCCeEEEEecCccChHHHHHHHHh
Q 003268 442 IPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSKEKVISAIKYEL----DRGGQVFYVLPRIKGLEEPMDFLQQ 514 (835)
Q Consensus 442 ~p~tl~~~~~~~~d~s~i~~~p~~---r~~V~~~~~~~~~~~~~~~i~~~l----~~ggqvlVf~~~v~~ie~l~~~L~~ 514 (835)
.... ..+....+..++.+|+.. |......+.. +......++...+ ..+.+++|||++++.++.++..|..
T Consensus 374 ~t~~--~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~ 450 (790)
T PRK09200 374 KTEE--KEFFEVYNMEVVQIPTNRPIIRIDYPDKVFV-TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE 450 (790)
T ss_pred hHHH--HHHHHHhCCcEEECCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH
Confidence 2222 222334455566665432 2222222221 2222333333333 4678999999999999999999999
Q ss_pred hCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC---CCcC-----EEEEecCCCCCHhHHHHHhccc
Q 003268 515 AFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI---QNAN-----TIIVQDVQQFGLAQLYQLRGRV 586 (835)
Q Consensus 515 ~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI---p~v~-----~VIi~d~p~~sl~~l~Qr~GRa 586 (835)
. ++.+..+||++.+.++..+...+..| +|+|||++++||+|| |+|. +||+++.|. +...|.||+||+
T Consensus 451 ~--gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~-s~r~y~qr~GRt 525 (790)
T PRK09200 451 A--GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME-SRRVDLQLRGRS 525 (790)
T ss_pred C--CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC-CHHHHHHhhccc
Confidence 8 89999999999988888888887766 799999999999999 6898 999999997 899999999999
Q ss_pred CCCCCceEEEEEecCCC
Q 003268 587 GRADKEAHAYLFYPDKS 603 (835)
Q Consensus 587 GR~g~~G~ay~l~~~~~ 603 (835)
||.|.+|.|++|++.++
T Consensus 526 GR~G~~G~s~~~is~eD 542 (790)
T PRK09200 526 GRQGDPGSSQFFISLED 542 (790)
T ss_pred cCCCCCeeEEEEEcchH
Confidence 99999999999998654
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=286.03 Aligned_cols=313 Identities=22% Similarity=0.285 Sum_probs=229.0
Q ss_pred hCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh----------CCCEEEEEcccHHHHH
Q 003268 277 QFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----------AGKQAMVLAPTIVLAK 345 (835)
Q Consensus 277 ~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~----------~g~qvlVLvPtr~La~ 345 (835)
.|.| +++.+|..+++.+.+ ...|.|||||||||||.+|+++++..+. ++.++++++|+++||.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~------SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~ 178 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYK------SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAA 178 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhc------CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHH
Confidence 3444 788999999998864 2568999999999999999999998876 4679999999999999
Q ss_pred HHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh--------cccccccccEEEecccccc
Q 003268 346 QHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG--------SRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 346 Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~--------~~l~~~~l~lVIIDEaHr~ 417 (835)
++++.|.++|+.+ |+.|.-++|+......+ +. .++|||+||+.+- +...+..++||||||+|.+
T Consensus 179 Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te-i~------~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 179 EMVDKFSKKLAPL-GISVRELTGDTQLTKTE-IA------DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHHHHHhhhcccc-cceEEEecCcchhhHHH-HH------hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh
Confidence 9999999999988 89999999986554332 22 4899999998661 1233578899999999976
Q ss_pred ----chhhH-------HHHHhhcCCceEEEeecCCChh-hHHHHHhcCCCcceeeCCC-CCccceeEEec----c---c-
Q 003268 418 ----GVKQK-------EKIASFKISVDVLTLSATPIPR-TLYLALTGFRDASLISTPP-PERLPIKTHLS----A---F- 476 (835)
Q Consensus 418 ----g~~~~-------e~l~~~~~~~~vL~lSATp~p~-tl~~~~~~~~d~s~i~~~p-~~r~~V~~~~~----~---~- 476 (835)
|.... .........+++|++|||.+.- .+..++.--....+..... -...|....+. . .
T Consensus 251 hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~ 330 (1230)
T KOG0952|consen 251 HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQ 330 (1230)
T ss_pred cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhh
Confidence 22111 1112334688999999996432 1222221110111111110 01112222111 1 0
Q ss_pred ---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----------CC-----------CcEEEEcCCCCHHH
Q 003268 477 ---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----------PG-----------VDIAIAHGQQYSRQ 532 (835)
Q Consensus 477 ---~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~----------p~-----------~~V~~lHG~m~~~e 532 (835)
-.+...+.+.+.+.+|.||+|||.++..+.+.++.|.+.. |+ ..++++|++|...+
T Consensus 331 ~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~D 410 (1230)
T KOG0952|consen 331 KKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSD 410 (1230)
T ss_pred hhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhh
Confidence 1234566777888999999999999988888877776542 11 35789999999999
Q ss_pred HHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC----------CHhHHHHHhcccCCCC--CceEEEEEec
Q 003268 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----------GLAQLYQLRGRVGRAD--KEAHAYLFYP 600 (835)
Q Consensus 533 re~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~----------sl~~l~Qr~GRaGR~g--~~G~ay~l~~ 600 (835)
|..+...|..|.++||+||..++-|+|+| +.+||+-+.+-| |.-+..|..|||||.. ..|.++++.+
T Consensus 411 R~l~E~~F~~G~i~vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt 489 (1230)
T KOG0952|consen 411 RQLVEKEFKEGHIKVLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITT 489 (1230)
T ss_pred HHHHHHHHhcCCceEEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEec
Confidence 99999999999999999999999999999 889998555433 4567899999999986 6799998887
Q ss_pred CCCc
Q 003268 601 DKSL 604 (835)
Q Consensus 601 ~~~~ 604 (835)
.+..
T Consensus 490 ~dkl 493 (1230)
T KOG0952|consen 490 RDKL 493 (1230)
T ss_pred ccHH
Confidence 6643
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.96 E-value=6e-28 Score=292.98 Aligned_cols=322 Identities=18% Similarity=0.187 Sum_probs=242.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCC--EEEEEcccHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQH 347 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~--qvlVLvPtr~La~Q~ 347 (835)
+...+.+.++..|+++|.+|+..+.+ ++|+||+.+||||||++|++|++..+..+. ++|+|.||++||+.+
T Consensus 59 l~~~l~~~g~~~lY~HQ~~A~~~~~~-------G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 59 LKSALVKAGIERLYSHQVDALRLIRE-------GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQ 131 (851)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHC-------CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhH
Confidence 46778888888999999999998864 589999999999999999999998876654 569999999999999
Q ss_pred HHHHHHhhcCCC-CcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc---------cccccccEEEecccccc
Q 003268 348 FDVVSERFSKYP-DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------VVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 348 ~~~~~~~f~~~~-gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~---------l~~~~l~lVIIDEaHr~ 417 (835)
.++|++..+.++ ++.+..++|.....++.. +..+.++|+++||.+|.-. ..++++.+||+||+|-+
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~----~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRA----IIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHH----HHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 999998777775 689999999887776543 3457899999999988531 23578999999999964
Q ss_pred ----chhhH---HHH----HhhcCCceEEEeecCCChhhHHHHHhcCCCcce-eeCCCCCccceeEEeccc---------
Q 003268 418 ----GVKQK---EKI----ASFKISVDVLTLSATPIPRTLYLALTGFRDASL-ISTPPPERLPIKTHLSAF--------- 476 (835)
Q Consensus 418 ----g~~~~---e~l----~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~-i~~~p~~r~~V~~~~~~~--------- 476 (835)
|.... +.| .....+.++|+.|||............-.+... +......+.+........
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 44332 222 223457899999999754433333222233333 222211111111111111
Q ss_pred --C-HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC--CC----CcEEEEcCCCCHHHHHHHHHHhhcCCeeE
Q 003268 477 --S-KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF--PG----VDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 477 --~-~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~--p~----~~V~~lHG~m~~~ere~vl~~F~~g~~~V 547 (835)
+ .......+...+..+-++++|+.+...++.++......+ .+ ..+..++|+|..++|.++...|++|+..+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 1 122333444556778899999999999988863332221 02 46889999999999999999999999999
Q ss_pred EEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+++|+.++-||||-.++.||.++.|.-+..+++|+.||+||.++.+..+..+..+
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999999999999999999546899999999999999888888777644
No 84
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.96 E-value=6.1e-28 Score=285.16 Aligned_cols=289 Identities=19% Similarity=0.230 Sum_probs=203.0
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcC
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g 385 (835)
.++.++||+|||++|++|++.....|+.|+|++|++.||.|+++.+.. +..+.|++|++..++....+.....+... .
T Consensus 86 ~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~-l~~~LGLsv~~~~~~s~~~~~~~~~rr~~-y 163 (762)
T TIGR03714 86 NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGP-VYEWLGLTVSLGVVDDPDEEYDANEKRKI-Y 163 (762)
T ss_pred ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHH-HHhhcCCcEEEEECCCCccccCHHHHHHh-C
Confidence 699999999999999999887777888999999999999999999987 44445899988776421111111111122 2
Q ss_pred CcceEecchHhhh-c-----------ccccccccEEEecccccc------------c-----------------------
Q 003268 386 HLNIIVGTHSLLG-S-----------RVVYNNLGLLVVDEEQRF------------G----------------------- 418 (835)
Q Consensus 386 ~~dIIIgT~~~L~-~-----------~l~~~~l~lVIIDEaHr~------------g----------------------- 418 (835)
.++|++|||+.|. + ...++++.++||||||.+ |
T Consensus 164 ~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~ 243 (762)
T TIGR03714 164 NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDV 243 (762)
T ss_pred CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCC
Confidence 4899999999883 1 123578899999999942 0
Q ss_pred -----------------hhhHHHH----------------------Hh---h----------------------------
Q 003268 419 -----------------VKQKEKI----------------------AS---F---------------------------- 428 (835)
Q Consensus 419 -----------------~~~~e~l----------------------~~---~---------------------------- 428 (835)
....+.+ .. +
T Consensus 244 dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~ 323 (762)
T TIGR03714 244 DYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTK 323 (762)
T ss_pred CeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCC
Confidence 0000000 00 0
Q ss_pred ---------------------------------cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC---ccceeEE
Q 003268 429 ---------------------------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE---RLPIKTH 472 (835)
Q Consensus 429 ---------------------------------~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~---r~~V~~~ 472 (835)
+...++.+||+|....... +....+..++.+|+.. |......
T Consensus 324 ~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~E--f~~iY~l~v~~IPt~kp~~r~d~~d~ 401 (762)
T TIGR03714 324 LQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKE--FIETYSLSVVKIPTNKPIIRIDYPDK 401 (762)
T ss_pred cchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHH--HHHHhCCCEEEcCCCCCeeeeeCCCe
Confidence 0013455677775322222 2234455556555432 2222112
Q ss_pred ecccCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEE
Q 003268 473 LSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549 (835)
Q Consensus 473 ~~~~~~---~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLV 549 (835)
+..... ..+.+.+.+....+.+++|||++++.++.++..|... ++.+.++||++.+.++..+..++..| .|+|
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~--gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlI 477 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE--GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTV 477 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC--CCCEEEecCCChHHHHHHHHHcCCCC--eEEE
Confidence 222111 2233333333456789999999999999999999988 89999999999998888888877776 7999
Q ss_pred ECCcCccCCCCC---------CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 550 CTNIVESGLDIQ---------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 550 aT~iie~GIDIp---------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||++++||+||| ++++|+++++|. ... ..||+||+||.|.+|.+++|++.++.
T Consensus 478 ATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps-~ri-d~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 478 ATSMAGRGTDIKLGKGVAELGGLAVIGTERMEN-SRV-DLQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred EccccccccCCCCCccccccCCeEEEEecCCCC-cHH-HHHhhhcccCCCCceeEEEEEccchh
Confidence 999999999999 999999999996 444 49999999999999999999986643
No 85
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2e-28 Score=295.59 Aligned_cols=315 Identities=20% Similarity=0.226 Sum_probs=255.0
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHH
Q 003268 270 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 270 ~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~ 348 (835)
.+..+...|.+ ..+|-|.+||..++. ++|++|..|||+||+++|.+|++.. ++-.+|+.|..+|.+.+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~-------Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv 321 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLS-------GKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQV 321 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHc-------CCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHH
Confidence 44556666665 889999999997753 6899999999999999999998754 568999999999999887
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcC--CcceEecchHhhhcc-------ccccc---ccEEEeccccc
Q 003268 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG--HLNIIVGTHSLLGSR-------VVYNN---LGLLVVDEEQR 416 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g--~~dIIIgT~~~L~~~-------l~~~~---l~lVIIDEaHr 416 (835)
..+... ++....+++.++..++...++.+..| .++|++-||+.+... ..+.. +.++||||||.
T Consensus 322 ~~L~~~-----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 322 THLSKK-----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred Hhhhhc-----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 777432 78999999999999999999999999 899999999987542 12333 78899999996
Q ss_pred c---------chhhHHHHHhhcCCceEEEeecCCChhhHHHHH--hcCCCcceeeCCCCCccceeEEecccCHHHHHHHH
Q 003268 417 F---------GVKQKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAI 485 (835)
Q Consensus 417 ~---------g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~--~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i 485 (835)
. .+.....++...+++.++++|||..+++..-.. .++.++.++... .+|......+...........+
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s-fnR~NL~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS-FNRPNLKYEVSPKTDKDALLDI 475 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-CCCCCceEEEEeccCccchHHH
Confidence 3 344555666667789999999999887765443 455666554432 3444444444433311222222
Q ss_pred HHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCC
Q 003268 486 KYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 486 ~~~l---~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~ 562 (835)
.... ..++..||+|.++.+|+.++..|+.. +...+.+|++|+..+|+.|-.+|..++++|+|||=++++|||.|+
T Consensus 476 ~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~--~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 476 LEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL--GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh--chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 2222 34577899999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred cCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+.||+|..|+ +++.|||-+|||||.|...+|.+||...+
T Consensus 554 VR~ViH~~lPk-s~E~YYQE~GRAGRDG~~s~C~l~y~~~D 593 (941)
T KOG0351|consen 554 VRFVIHYSLPK-SFEGYYQEAGRAGRDGLPSSCVLLYGYAD 593 (941)
T ss_pred eeEEEECCCch-hHHHHHHhccccCcCCCcceeEEecchhH
Confidence 99999999998 99999999999999999999999998764
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=9.7e-27 Score=281.68 Aligned_cols=302 Identities=23% Similarity=0.234 Sum_probs=203.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.+.|+|.|..+.... ..+..++|.+|||+|||++++.++......+ ..++|..||+++++|+++++.+.+.
T Consensus 284 ~~~p~p~Q~~~~~~~-------~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 284 GYQPRQLQTLVDALP-------LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCCChHHHHHHHhhc-------cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 569999999873221 1256789999999999999998887655444 6899999999999999999986333
Q ss_pred C-CCCcEEEEecCCCCHHHHH---------------------HHHHhH-hc-CCcceEecchHhhhc-cc-----ccccc
Q 003268 357 K-YPDIKVGLLSRFQSKAEKE---------------------EHLDMI-KH-GHLNIIVGTHSLLGS-RV-----VYNNL 406 (835)
Q Consensus 357 ~-~~gi~V~~l~g~~s~~e~~---------------------~~l~~l-~~-g~~dIIIgT~~~L~~-~l-----~~~~l 406 (835)
. ++...+.+++|........ +++..- +. --.+|+|||...+.. .+ .++.+
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 2 2235678888754321110 111100 00 015899999865531 11 12333
Q ss_pred ----cEEEeccccccchhhHHHH----Hhh-cCCceEEEeecCCChhhHHHHHhcCCC---------cceeeC-------
Q 003268 407 ----GLLVVDEEQRFGVKQKEKI----ASF-KISVDVLTLSATPIPRTLYLALTGFRD---------ASLIST------- 461 (835)
Q Consensus 407 ----~lVIIDEaHr~g~~~~e~l----~~~-~~~~~vL~lSATp~p~tl~~~~~~~~d---------~s~i~~------- 461 (835)
++|||||+|-+.......| ..+ ..+..+|+||||+++.........+.. .+.+..
T Consensus 437 ~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 4799999998754332222 111 346789999999976544322221110 011100
Q ss_pred ------CC---CCccceeEEec--c--cCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC-CCcEEEEcCC
Q 003268 462 ------PP---PERLPIKTHLS--A--FSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQ 527 (835)
Q Consensus 462 ------~p---~~r~~V~~~~~--~--~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p-~~~V~~lHG~ 527 (835)
.+ ..+..+..... . .....+.+.+.+.+..+++++||||+++.++.+++.|++.++ +..+..+||+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 00 01111111111 0 223456777777778899999999999999999999998753 4689999999
Q ss_pred CCHHHH----HHHHHHh-hcCC---eeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCC
Q 003268 528 QYSRQL----EETMEKF-AQGA---IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 528 m~~~er----e~vl~~F-~~g~---~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
++..+| +++++.| ++|+ ..|||||+++|+||||+ ++.+|...+| ++.++||+||+||.++
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP---idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP---VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC---HHHHHHHHhccCCCCC
Confidence 999988 4677888 6665 47999999999999996 8999887666 6899999999999875
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=6.3e-27 Score=247.09 Aligned_cols=297 Identities=25% Similarity=0.393 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~g 360 (835)
++||.|+.|-..++..+.+ ..+.||.|.||+|||+.....+..++..|..+.+..|+...+.+++.++++-|. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~---k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~---~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQ---KEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFS---N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHh---cCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhc---c
Confidence 8999999999999987743 578999999999999998888888999999999999999999999999998765 5
Q ss_pred cEEEEecCCCCHHHHHHHHHhHhcCCcceEecc-hHhhhcccccccccEEEeccccccchhhHHHH-----HhhcCCceE
Q 003268 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI-----ASFKISVDV 434 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT-~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l-----~~~~~~~~v 434 (835)
..+..++|+.+..- ...+||+| |+++. ..+.++++||||+|-|-+.....| +..+.+..+
T Consensus 171 ~~I~~Lyg~S~~~f-----------r~plvVaTtHQLlr---Fk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~ 236 (441)
T COG4098 171 CDIDLLYGDSDSYF-----------RAPLVVATTHQLLR---FKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGAT 236 (441)
T ss_pred CCeeeEecCCchhc-----------cccEEEEehHHHHH---HHhhccEEEEeccccccccCCHHHHHHHHHhhcccCce
Confidence 78888988654321 24566655 55553 125689999999999865433222 234567788
Q ss_pred EEeecCCChhhHHHHHhcCCCcceeeCCC---CCcccee--EEecccCH--------HHHHHHHHHHHhcCCeEEEEecC
Q 003268 435 LTLSATPIPRTLYLALTGFRDASLISTPP---PERLPIK--THLSAFSK--------EKVISAIKYELDRGGQVFYVLPR 501 (835)
Q Consensus 435 L~lSATp~p~tl~~~~~~~~d~s~i~~~p---~~r~~V~--~~~~~~~~--------~~~~~~i~~~l~~ggqvlVf~~~ 501 (835)
|.|||||...-......+-. ..+..|. ....|+. .+...+++ ..+...+......+..+++|+|+
T Consensus 237 IylTATp~k~l~r~~~~g~~--~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~ 314 (441)
T COG4098 237 IYLTATPTKKLERKILKGNL--RILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPE 314 (441)
T ss_pred EEEecCChHHHHHHhhhCCe--eEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecc
Confidence 99999986543333333321 1122210 1112222 22233322 24566777777788999999999
Q ss_pred ccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCC--CCCHhHH
Q 003268 502 IKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQ--QFGLAQL 579 (835)
Q Consensus 502 v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p--~~sl~~l 579 (835)
++..+.+++.|+..+|...++.+|+.- ..|.+..+.|++|++++||+|+|+|+|+.+|++++.+. ++. .|+-+.+
T Consensus 315 I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vl-gaeh~vfTesaL 391 (441)
T COG4098 315 IETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVL-GAEHRVFTESAL 391 (441)
T ss_pred hHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEe-cCCcccccHHHH
Confidence 999999999999999999999999874 47888899999999999999999999999999997654 433 4888999
Q ss_pred HHHhcccCCCC--CceEEEEEecCC
Q 003268 580 YQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 580 ~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
+|.+||+||.- ..|.+++|-...
T Consensus 392 VQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 392 VQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred HHHhhhccCCCcCCCCcEEEEeccc
Confidence 99999999985 468888776544
No 88
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=1.1e-27 Score=257.63 Aligned_cols=318 Identities=19% Similarity=0.191 Sum_probs=243.9
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHH
Q 003268 270 AIAEFAAQFPY--EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 270 ~~~~~~~~~~~--~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~ 347 (835)
+.+.+.+.|.+ .-+|.|.+|+..+.+ +..|+.||+|||+||+++|.+|++.. +...+|+.|..+|....
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK------~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVK------RKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHh------ccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHH
Confidence 44566676766 568999999998865 25899999999999999999998755 55889999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCC--cceEecchHhhh---------cccccccccEEEeccccc
Q 003268 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH--LNIIVGTHSLLG---------SRVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~--~dIIIgT~~~L~---------~~l~~~~l~lVIIDEaHr 416 (835)
.+.+.. + .+.+..+++..+..++.+.+.++...+ ..+++-||+.-. .-..-+-+.++||||||.
T Consensus 78 iDHL~~-L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 78 IDHLKR-L----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHHh-c----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 988875 3 578888999999999999998887654 567889986432 122345679999999997
Q ss_pred c---c------hhhHHHHHhhcCCceEEEeecCCChhhHHHHH--hcCCCcceeeCCCCCccceeE--Eecc---cCHHH
Q 003268 417 F---G------VKQKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPPPERLPIKT--HLSA---FSKEK 480 (835)
Q Consensus 417 ~---g------~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~--~~~~d~s~i~~~p~~r~~V~~--~~~~---~~~~~ 480 (835)
. | +-....|+...+++.-|.+|||..+.+..... ..+.++..+...|.-|...-. .+.. ..-..
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~ 232 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTV 232 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHh
Confidence 3 2 22234466666888999999999887654332 233444433333333322100 0000 00112
Q ss_pred HHHHHHHHHhc-----------CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEE
Q 003268 481 VISAIKYELDR-----------GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549 (835)
Q Consensus 481 ~~~~i~~~l~~-----------ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLV 549 (835)
+.+.....+.+ .|--||+|.+++.+|.++-.|... |+....+|+++...+|..+-++|.+++..|++
T Consensus 233 LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~--Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 233 LADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA--GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred HHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc--CcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 23333333321 256799999999999999999887 88999999999999999999999999999999
Q ss_pred ECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 550 CTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 550 aT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||..+++|+|-|+|++||+.+.+. +++-|||-.|||||.|.+.||-++|..++.
T Consensus 311 AT~SFGMGVDKp~VRFViHW~~~q-n~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 311 ATVSFGMGVDKPDVRFVIHWSPSQ-NLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred EEeccccccCCcceeEEEecCchh-hhHHHHHhccccccCCCccceeeeecccch
Confidence 999999999999999999999998 999999999999999999999999987755
No 89
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.1e-28 Score=275.17 Aligned_cols=384 Identities=16% Similarity=0.192 Sum_probs=274.5
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHH------hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVV------SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~------~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~ 377 (835)
--+||||.||||||++.-.-++.+- .++..+-|..|+|+.|..+++++...++.+ +..|++..++.....
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqIRfd~ti~--- 347 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQIRFDGTIG--- 347 (1172)
T ss_pred CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEEEeccccC---
Confidence 3588999999999998544444331 124578899999999999999999999886 689999998754322
Q ss_pred HHHhHhcCCcceEecchHhhhc----ccccccccEEEeccccccchh------hHHHHHh----h------cCCceEEEe
Q 003268 378 HLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVK------QKEKIAS----F------KISVDVLTL 437 (835)
Q Consensus 378 ~l~~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~g~~------~~e~l~~----~------~~~~~vL~l 437 (835)
....|.+.|.+.|.+ ++.+..|++|||||||+-.+. ....+-. + -...++|+|
T Consensus 348 -------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIM 420 (1172)
T KOG0926|consen 348 -------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIM 420 (1172)
T ss_pred -------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEE
Confidence 347899999998864 667899999999999973221 1111111 1 236789999
Q ss_pred ecCCChhhHHHHHhcC-CCcceeeCCCCCccceeEEecccCHHHH-HHHHHHHHh-----cCCeEEEEecCccChHHHHH
Q 003268 438 SATPIPRTLYLALTGF-RDASLISTPPPERLPIKTHLSAFSKEKV-ISAIKYELD-----RGGQVFYVLPRIKGLEEPMD 510 (835)
Q Consensus 438 SATp~p~tl~~~~~~~-~d~s~i~~~p~~r~~V~~~~~~~~~~~~-~~~i~~~l~-----~ggqvlVf~~~v~~ie~l~~ 510 (835)
|||..-........-+ .-+++|.+ +..++||..+.....+.++ .++.++.+. ..|-+|||+....+++.+++
T Consensus 421 SATLRVsDFtenk~LFpi~pPlikV-dARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~ 499 (1172)
T KOG0926|consen 421 SATLRVSDFTENKRLFPIPPPLIKV-DARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCE 499 (1172)
T ss_pred eeeEEecccccCceecCCCCceeee-ecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHH
Confidence 9997432221111111 12233333 3567888888765544333 344444332 24779999999999999888
Q ss_pred HHHhhCCC------------------------------------------------------------------------
Q 003268 511 FLQQAFPG------------------------------------------------------------------------ 518 (835)
Q Consensus 511 ~L~~~~p~------------------------------------------------------------------------ 518 (835)
.|++.+|.
T Consensus 500 kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~n 579 (1172)
T KOG0926|consen 500 KLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVN 579 (1172)
T ss_pred HHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcccccccccc
Confidence 88877541
Q ss_pred -------------------------CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCC
Q 003268 519 -------------------------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQ 573 (835)
Q Consensus 519 -------------------------~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~ 573 (835)
..|.++++=++.+.+.++++.-..|..-++|||+++++.+.||++.+||+.+-..
T Consensus 580 ge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K 659 (1172)
T KOG0926|consen 580 GEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVK 659 (1172)
T ss_pred CCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchh
Confidence 0377788888999999999999999999999999999999999999999865321
Q ss_pred -----------------CCHhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccc
Q 003268 574 -----------------FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIR 636 (835)
Q Consensus 574 -----------------~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~ir 636 (835)
.|-++.-||+|||||.| +|+||.+|+..-+.+....-.++.|...-- .++.+.|+.|.|.
T Consensus 660 ~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pv--e~lvLqMKsMnI~ 736 (1172)
T KOG0926|consen 660 ERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSAVFSNDFEEFSLPEILKKPV--ESLVLQMKSMNID 736 (1172)
T ss_pred hhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhHHhhcchhhhccHHHhhCcH--HHHHHHHHhcCcc
Confidence 13456779999999996 799999999776655555555666655422 5888999998664
Q ss_pred cCCCcccccccCCcccchHHHHHHHHHHHHHhhcCcccccccCcceEEeeecCCCCccccccccCCchHHH
Q 003268 637 GFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINHLENPMEMV 707 (835)
Q Consensus 637 G~g~~lg~~q~g~i~~vg~~~y~~~L~~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~~~~~~~~~ 707 (835)
++..+.+...++.+.++.-.+.|. ++.+++.++ ..|++|+.|+-||+.|..+++++.+.+.-..-|
T Consensus 737 ---kVvnFPFPtpPd~~~L~~Aer~L~-~LgALd~~g-~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy 802 (1172)
T KOG0926|consen 737 ---KVVNFPFPTPPDRSALEKAERRLK-ALGALDSNG-GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPY 802 (1172)
T ss_pred ---ceecCCCCCCccHHHHHHHHHHHH-HhccccccC-CcccccchhcccccChhHHHHHHHHHhhcchhH
Confidence 444455556666666665555554 666676554 357999999999999999998887766544433
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=1.5e-26 Score=265.01 Aligned_cols=290 Identities=23% Similarity=0.304 Sum_probs=208.5
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
..+.++|+|+|.+|+.++.+.+.. .+..+++.|||+|||.+++.++... +..++|||||++|+.||++.+...+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~---~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRT---ERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhccc---CCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 345678999999999999876532 5778999999999999998888766 3449999999999999998887644
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEeccccccchhhHHHHHhhcC
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGVKQKEKIASFKI 430 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~ 430 (835)
.. ...++.+.+...... + ..|.|+|.+.+... ...+.+++||+||||+.+......+.....
T Consensus 105 ~~--~~~~g~~~~~~~~~~----------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~ 171 (442)
T COG1061 105 LL--NDEIGIYGGGEKELE----------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLS 171 (442)
T ss_pred CC--ccccceecCceeccC----------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhh
Confidence 32 135666766432111 1 36999999887653 222469999999999998766666666656
Q ss_pred Cce-EEEeecCCChhhH---HHHHhcCCCcceeeCCCC------CccceeEE---e--c------------c--------
Q 003268 431 SVD-VLTLSATPIPRTL---YLALTGFRDASLISTPPP------ERLPIKTH---L--S------------A-------- 475 (835)
Q Consensus 431 ~~~-vL~lSATp~p~tl---~~~~~~~~d~s~i~~~p~------~r~~V~~~---~--~------------~-------- 475 (835)
+.. +|+|||||. +.. ........++.+...... --.|.... . . .
T Consensus 172 ~~~~~LGLTATp~-R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPE-REDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCce-eecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 666 999999986 322 111111111111111100 00011000 0 0 0
Q ss_pred -------------cCHHHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHH
Q 003268 476 -------------FSKEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEK 539 (835)
Q Consensus 476 -------------~~~~~~~~~i~~~l~---~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~ 539 (835)
.........+...+. ++.++++|+.++.+++.++..+... +. +..+.|..+..+|+.+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~--~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP--GI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC--Cc-eEEEECCCCHHHHHHHHHH
Confidence 000011122222233 5779999999999999999988765 55 8899999999999999999
Q ss_pred hhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCC
Q 003268 540 FAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRA 589 (835)
Q Consensus 540 F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~ 589 (835)
|+.|.+++||++.++.+|+|+|+++++|...... |..+|.||+||+-|.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~-S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG-SRRLFIQRLGRGLRP 376 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC-cHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999876 899999999999993
No 91
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=267.24 Aligned_cols=304 Identities=22% Similarity=0.274 Sum_probs=207.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.+.++++|.+.+...+ ++|+||++|||+|||.+|...+...+.. ..+|++++||+-|+.|+...++..+.
T Consensus 60 ~~~lR~YQ~eivq~AL--------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL--------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred cccccHHHHHHhHHhh--------cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccC
Confidence 4689999999877654 4789999999999999999988887643 56899999999999999977775332
Q ss_pred CCCCcEEEEecCC-CCHHHHHHHHHhHhcCCcceEecchHhhhccc------ccccccEEEecccccc-c---hhh--HH
Q 003268 357 KYPDIKVGLLSRF-QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV------VYNNLGLLVVDEEQRF-G---VKQ--KE 423 (835)
Q Consensus 357 ~~~gi~V~~l~g~-~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l------~~~~l~lVIIDEaHr~-g---~~~--~e 423 (835)
+ ..+....++ .+...+...+ ...+|+|.||..|.+++ .++++.++|+||||+- | +.. ++
T Consensus 132 ~---~~~T~~l~~~~~~~~r~~i~-----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~ 203 (746)
T KOG0354|consen 132 P---YSVTGQLGDTVPRSNRGEIV-----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMRE 203 (746)
T ss_pred c---ccceeeccCccCCCchhhhh-----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHH
Confidence 2 344444444 4444444444 24799999999997653 2577999999999995 2 222 22
Q ss_pred HHHhhcCCceEEEeecCCChhhHHHH------------------------------------------------------
Q 003268 424 KIASFKISVDVLTLSATPIPRTLYLA------------------------------------------------------ 449 (835)
Q Consensus 424 ~l~~~~~~~~vL~lSATp~p~tl~~~------------------------------------------------------ 449 (835)
.+.......++|+|||||-..+....
T Consensus 204 ~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 23333334499999999852211100
Q ss_pred ----HhcC---CCcceeeC-------------CC-CCcc------------------cee-----EEeccc------C--
Q 003268 450 ----LTGF---RDASLIST-------------PP-PERL------------------PIK-----THLSAF------S-- 477 (835)
Q Consensus 450 ----~~~~---~d~s~i~~-------------~p-~~r~------------------~V~-----~~~~~~------~-- 477 (835)
..++ .+.+.+.. -+ ..+. .++ .+...+ .
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 0000 00000000 00 0000 000 000000 0
Q ss_pred ---------------------------------HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHh-hCCCCcE
Q 003268 478 ---------------------------------KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQ-AFPGVDI 521 (835)
Q Consensus 478 ---------------------------------~~~~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~-~~p~~~V 521 (835)
-+.+.+.+.+.. ....+++||+.+++.++.+..+|.+ ..++++.
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 001111222211 2346899999999999999999984 3344444
Q ss_pred EEEcC--------CCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCce
Q 003268 522 AIAHG--------QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593 (835)
Q Consensus 522 ~~lHG--------~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G 593 (835)
..+-| +|++.++.++++.|++|+++|||||+|+|+|+||+.++.||-||+.. |+-..+||+|| ||. +.|
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s-npIrmIQrrGR-gRa-~ns 520 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS-NPIRMVQRRGR-GRA-RNS 520 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc-cHHHHHHHhcc-ccc-cCC
Confidence 44433 69999999999999999999999999999999999999999999987 89999999999 998 789
Q ss_pred EEEEEecC
Q 003268 594 HAYLFYPD 601 (835)
Q Consensus 594 ~ay~l~~~ 601 (835)
+|+++++.
T Consensus 521 ~~vll~t~ 528 (746)
T KOG0354|consen 521 KCVLLTTG 528 (746)
T ss_pred eEEEEEcc
Confidence 99999983
No 92
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.1e-28 Score=245.86 Aligned_cols=284 Identities=22% Similarity=0.238 Sum_probs=215.8
Q ss_pred ChHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--C-CEEEEEcccHHHH
Q 003268 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--G-KQAMVLAPTIVLA 344 (835)
Q Consensus 268 ~~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g-~qvlVLvPtr~La 344 (835)
+++.+++-+.++-.|+..|.+|||...- |||+|.++..|.|||.+|.++.++.+.. | -.++|+|.||+||
T Consensus 51 pellraivdcgfehpsevqhecipqail-------gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrela 123 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELA 123 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhh-------cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHH
Confidence 3488899999999999999999997653 6899999999999999999999888765 2 4688999999999
Q ss_pred HHHHHHHHHhhcCC-CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh-----cccccccccEEEeccccccc
Q 003268 345 KQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SRVVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~-~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~-----~~l~~~~l~lVIIDEaHr~g 418 (835)
.|+.++.. +|+++ |+++|.++.|+.+.....+.++ + .++|+||||+++. +.+.++++...|+||++.+.
T Consensus 124 fqi~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk---~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 124 FQISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLK---N-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred HHHHHHHH-HHHhhCCCceEEEEEcceeccccHHHHh---C-CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 99999886 47775 8999999999988766555543 3 5899999999885 35778999999999999873
Q ss_pred h--hhH----HHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCcc---ceeEEecccC---HHHHHHHHH
Q 003268 419 V--KQK----EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERL---PIKTHLSAFS---KEKVISAIK 486 (835)
Q Consensus 419 ~--~~~----e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~---~V~~~~~~~~---~~~~~~~i~ 486 (835)
- ..+ +..+..+...|+.++|||...........++.|+-.+........ ..++++.... ++..+..+.
T Consensus 199 e~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLL 278 (387)
T KOG0329|consen 199 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLL 278 (387)
T ss_pred HHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhh
Confidence 2 222 333344567899999999988777667777777655544332221 1222322221 122222233
Q ss_pred HHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEE
Q 003268 487 YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 487 ~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~V 566 (835)
..++ -.||+||+.++.. + .| ..+ +|||+++++|+||..+|.|
T Consensus 279 d~Le-FNQVvIFvKsv~R-----------------------l----------~f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 279 DVLE-FNQVVIFVKSVQR-----------------------L----------SF---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhh-hcceeEeeehhhh-----------------------h----------hh---hhh-hHHhhhhccccCcccceee
Confidence 3332 2588888877543 0 03 223 8999999999999999999
Q ss_pred EEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 567 Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++||+|. +..+|+||.|||||.|..|.++.|++.+
T Consensus 321 ~NYdmp~-~~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 321 FNYDMPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred eccCCCC-CchHHHHHhhhhhccccccceeehhcch
Confidence 9999997 8999999999999999999999998765
No 93
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=1.9e-25 Score=271.95 Aligned_cols=308 Identities=19% Similarity=0.253 Sum_probs=207.1
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
...|.|+|..++..++.. ....+|++.++|.|||..+...+...+..| +++||+||+ .|..||..++..+|+
T Consensus 150 ~~~l~pHQl~~~~~vl~~-----~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~ 223 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRR-----HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFN 223 (956)
T ss_pred CCCCCHHHHHHHHHHhhc-----cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhC
Confidence 357999999998877642 235689999999999999877766555554 689999998 799999999987774
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc------cccccccEEEeccccccch------hhHHH
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGV------KQKEK 424 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~------l~~~~l~lVIIDEaHr~g~------~~~e~ 424 (835)
+.+.++.+.............. ...+++|+|.+.+..+ +.-.++++|||||||++.. .....
T Consensus 224 ----l~~~i~~~~~~~~~~~~~~~pf--~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~ 297 (956)
T PRK04914 224 ----LRFSLFDEERYAEAQHDADNPF--ETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQV 297 (956)
T ss_pred ----CCeEEEcCcchhhhcccccCcc--ccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHH
Confidence 4455554432111000000000 1367999999988652 2235789999999999741 11233
Q ss_pred HHhhc-CCceEEEeecCCChhhHH--HHHhcCCCcce-------------------------------------------
Q 003268 425 IASFK-ISVDVLTLSATPIPRTLY--LALTGFRDASL------------------------------------------- 458 (835)
Q Consensus 425 l~~~~-~~~~vL~lSATp~p~tl~--~~~~~~~d~s~------------------------------------------- 458 (835)
+..+. ....+|+|||||...... .++..+.++..
T Consensus 298 v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~ 377 (956)
T PRK04914 298 VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG 377 (956)
T ss_pred HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc
Confidence 33332 345789999999631100 00000000000
Q ss_pred ---------------------------------------eeC------CCCCccceeEEecccC----------------
Q 003268 459 ---------------------------------------IST------PPPERLPIKTHLSAFS---------------- 477 (835)
Q Consensus 459 ---------------------------------------i~~------~p~~r~~V~~~~~~~~---------------- 477 (835)
+.. ..+.|. +..+-.+..
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~-~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 378 EQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRE-LHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred ccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCc-eeEeecCCCHHHHHHHHHhHHHHHH
Confidence 000 000000 001000000
Q ss_pred --------------------HHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHH
Q 003268 478 --------------------KEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEE 535 (835)
Q Consensus 478 --------------------~~~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~ 535 (835)
.+...+.+...+. .+.+++|||++...+..+++.|+... |+++..+||+|++.+|++
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~-Gi~~~~ihG~~s~~eR~~ 535 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRERE-GIRAAVFHEGMSIIERDR 535 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc-CeeEEEEECCCCHHHHHH
Confidence 0011222333333 35799999999999999999996432 789999999999999999
Q ss_pred HHHHhhcC--CeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecC
Q 003268 536 TMEKFAQG--AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPD 601 (835)
Q Consensus 536 vl~~F~~g--~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~ 601 (835)
+++.|+++ ..+|||||+++++|+|++.+++||+||.| |++..|.||+||+||.|+.+.+.++++.
T Consensus 536 ~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP-~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 536 AAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLP-FNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred HHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCC-CCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 99999984 59999999999999999999999999999 6999999999999999988877665543
No 94
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.94 E-value=7.2e-26 Score=269.49 Aligned_cols=374 Identities=19% Similarity=0.221 Sum_probs=257.1
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH-h--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV-S--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~-~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
...++|+|+||||||++...-++... . ....++|..|+|.-|..+++++..+-+..+|-.|++-.+..+...
T Consensus 188 ~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s----- 262 (924)
T KOG0920|consen 188 NQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESKRS----- 262 (924)
T ss_pred CceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecccC-----
Confidence 36799999999999999655555432 2 235789999999999999999988776667888888888654432
Q ss_pred HhHhcCCcceEecchHhhhc----ccccccccEEEecccccc------chhhHHHHHhhcCCceEEEeecCCChhhHHHH
Q 003268 380 DMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRF------GVKQKEKIASFKISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 380 ~~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~------g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~ 449 (835)
-...+.+||.+.|.+ +..+.++..||+||+|+= ..-..+.+...+++.++|+||||.... .+
T Consensus 263 -----~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae---~f 334 (924)
T KOG0920|consen 263 -----RETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAE---LF 334 (924)
T ss_pred -----CceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchH---HH
Confidence 236799999987764 345788999999999973 233345566667999999999998643 34
Q ss_pred HhcCCCcceeeCCCCCccceeEEe-----------------------------------cccCHHHHHHHHHHHH---hc
Q 003268 450 LTGFRDASLISTPPPERLPIKTHL-----------------------------------SAFSKEKVISAIKYEL---DR 491 (835)
Q Consensus 450 ~~~~~d~s~i~~~p~~r~~V~~~~-----------------------------------~~~~~~~~~~~i~~~l---~~ 491 (835)
..++....++.++ ...+||.++. ...+. .+...+...+ ..
T Consensus 335 s~YF~~~pvi~i~-grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~-~Li~~li~~I~~~~~ 412 (924)
T KOG0920|consen 335 SDYFGGCPVITIP-GRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY-DLIEDLIEYIDEREF 412 (924)
T ss_pred HHHhCCCceEeec-CCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH-HHHHHHHHhcccCCC
Confidence 5556666666553 3333332221 00111 2222222222 34
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC-----CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEE
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAFP-----GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~p-----~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~V 566 (835)
.|-+|||.|+..++..+.+.|....+ .+-+.++|+.|+..+++.++..-..|..+|+++|+|+|++|.|+++-+|
T Consensus 413 ~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyV 492 (924)
T KOG0920|consen 413 EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYV 492 (924)
T ss_pred CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEE
Confidence 58999999999999999999976432 2568889999999999999999999999999999999999999999999
Q ss_pred EEec--------CCC---------CCHhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhh
Q 003268 567 IVQD--------VQQ---------FGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLA 629 (835)
Q Consensus 567 Ii~d--------~p~---------~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la 629 (835)
|+.+ +.. -+-+...||+|||||. +.|.||.+|+...+......-.+++|.+... ....+.
T Consensus 493 IDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL--~~l~L~ 569 (924)
T KOG0920|consen 493 IDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRTPL--EELCLH 569 (924)
T ss_pred EecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcccccCChHHHhChH--HHhhhe
Confidence 9844 321 1346678999999998 7999999999876544333344555544322 122222
Q ss_pred hhhhccccCCCcc--cccccCCcccchHHHHHHHHHHHHHhhcCcccccccCcceEEeeecCCCCccccccc
Q 003268 630 EKDMGIRGFGTIF--GEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPRLPSEYINH 699 (835)
Q Consensus 630 ~~dL~irG~g~~l--g~~q~g~i~~vg~~~y~~~L~~ai~~l~~~~~~~~~~g~~~~~l~idp~~~~~~i~~ 699 (835)
.+-+ +.|.+- -....+.+..-++..-.++|. .|.+++... ..|++|..++.+|+||.+++.++-.
T Consensus 570 iK~l---~~~~~~~fLskaldpP~~~~v~~a~~~L~-~igaL~~~e-~LT~LG~~la~lPvd~~igK~ll~g 636 (924)
T KOG0920|consen 570 IKVL---EQGSIKAFLSKALDPPPADAVDLAIERLK-QIGALDESE-ELTPLGLHLASLPVDVRIGKLLLFG 636 (924)
T ss_pred eeec---cCCCHHHHHHHhcCCCChHHHHHHHHHHH-HhccccCcc-cchHHHHHHHhCCCccccchhheeh
Confidence 2212 122211 111223333444444444444 344555444 4689999999999999999865543
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.94 E-value=5.1e-25 Score=233.71 Aligned_cols=324 Identities=19% Similarity=0.217 Sum_probs=250.9
Q ss_pred CCCCCCh-HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 263 PPYPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 263 ~~~~~~~-~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
..||+.. .-..+.+.|.. ..+|.|..||+..+. +.|.++..|||.||+++|.+|++.+ +.-++|++|.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma-------~ed~~lil~tgggkslcyqlpal~a---dg~alvi~pl 143 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMA-------GEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPL 143 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhc-------cCceEEEEeCCCccchhhhhhHHhc---CCceEeechh
Confidence 3467665 55666667655 679999999998864 5789999999999999999998765 6779999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhc--CCcceEecchHhhhc----------ccccccccE
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGS----------RVVYNNLGL 408 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~--g~~dIIIgT~~~L~~----------~l~~~~l~l 408 (835)
..|.....-.+++. |+....+....++.+.+..-..+.+ .+..+++.||+.+.+ .+....+.+
T Consensus 144 islmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 99999888878763 7888888888787777666666654 467899999987753 233456789
Q ss_pred EEecccccc---------chhhHHHHHhhcCCceEEEeecCCChhhHHHHHhcC--CCcceeeCCCCCccceeEEe--cc
Q 003268 409 LVVDEEQRF---------GVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLPIKTHL--SA 475 (835)
Q Consensus 409 VIIDEaHr~---------g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~--~d~s~i~~~p~~r~~V~~~~--~~ 475 (835)
+-|||+|.. .+.....+++..++..++++|||.....+..+..-+ ...-.+. ..-+|......+ .+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a~fnr~nl~yev~qkp 297 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-AGFNRPNLKYEVRQKP 297 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheee-cccCCCCceeEeeeCC
Confidence 999999962 345567788888999999999998655543322111 1110111 111222222222 23
Q ss_pred cCHHHHHHHHHHHHhc---CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC
Q 003268 476 FSKEKVISAIKYELDR---GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN 552 (835)
Q Consensus 476 ~~~~~~~~~i~~~l~~---ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~ 552 (835)
-+.+...+.|...+.. |..-+++|-+.+++|.++..|+.+ |+....+|+.|.++++.-+-+.+..|++.|+|+|-
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~--gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH--GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc--CccccccccccCccccccccccccccceEEEEEEe
Confidence 3456666777766654 345688899999999999999999 89999999999999999999999999999999999
Q ss_pred cCccCCCCCCcCEEEEecCCCCCHhHHHH-------------------------------------------HhcccCCC
Q 003268 553 IVESGLDIQNANTIIVQDVQQFGLAQLYQ-------------------------------------------LRGRVGRA 589 (835)
Q Consensus 553 iie~GIDIp~v~~VIi~d~p~~sl~~l~Q-------------------------------------------r~GRaGR~ 589 (835)
.+++|||-|+|++||+..+|. +++.||| -.||+||.
T Consensus 376 afgmgidkpdvrfvihhsl~k-sienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd 454 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPK-SIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRD 454 (695)
T ss_pred eecccCCCCCeeEEEecccch-hHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccC
Confidence 999999999999999999998 9999999 78999999
Q ss_pred CCceEEEEEecCCCcC
Q 003268 590 DKEAHAYLFYPDKSLL 605 (835)
Q Consensus 590 g~~G~ay~l~~~~~~~ 605 (835)
+.++.|+++|.-.+++
T Consensus 455 ~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 455 DMKADCILYYGFADIF 470 (695)
T ss_pred CCcccEEEEechHHHH
Confidence 9999999998655443
No 96
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=254.61 Aligned_cols=301 Identities=23% Similarity=0.292 Sum_probs=225.6
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
..+||++-|.|..||.-+- ++..+||.|.|.+|||.+|-.|+..++.+..+|++..|-++|.+|.|+++.+.|
T Consensus 124 k~YPF~LDpFQ~~aI~Cid-------r~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 124 KTYPFTLDPFQSTAIKCID-------RGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred cCCCcccCchHhhhhhhhc-------CCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHh
Confidence 5689999999999987663 357899999999999999999999999999999999999999999999999988
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc-----ccccccEEEecccccc-----chhhHHHH
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF-----GVKQKEKI 425 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l-----~~~~l~lVIIDEaHr~-----g~~~~e~l 425 (835)
+ .|++.+|+.+.. -.+..+|.|.+.|...+ .++.+++||+||+|-| |+-..+.|
T Consensus 197 ~-----DVGLMTGDVTIn-----------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 197 K-----DVGLMTGDVTIN-----------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred c-----ccceeecceeeC-----------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeE
Confidence 5 478888876543 34778999988886532 3578999999999988 55445667
Q ss_pred HhhcCCceEEEeecCCChhhHHHH--HhcC-CCc-ceeeCCCCCccceeEEec---------------ccCHH-------
Q 003268 426 ASFKISVDVLTLSATPIPRTLYLA--LTGF-RDA-SLISTPPPERLPIKTHLS---------------AFSKE------- 479 (835)
Q Consensus 426 ~~~~~~~~vL~lSATp~p~tl~~~--~~~~-~d~-s~i~~~p~~r~~V~~~~~---------------~~~~~------- 479 (835)
.-++.+++.+++|||.+. ..+++ ...+ ..+ .++.+ .....|.+.|+. .+..+
T Consensus 261 IllP~~vr~VFLSATiPN-A~qFAeWI~~ihkQPcHVVYT-dyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~ 338 (1041)
T KOG0948|consen 261 ILLPDNVRFVFLSATIPN-ARQFAEWICHIHKQPCHVVYT-DYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMS 338 (1041)
T ss_pred EeccccceEEEEeccCCC-HHHHHHHHHHHhcCCceEEee-cCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHH
Confidence 778899999999999643 33333 2222 122 22222 122222222211 11111
Q ss_pred -------------------------------HHHHHHHHHHhc-CCeEEEEecCccChHHHHHHHHhhC-----------
Q 003268 480 -------------------------------KVISAIKYELDR-GGQVFYVLPRIKGLEEPMDFLQQAF----------- 516 (835)
Q Consensus 480 -------------------------------~~~~~i~~~l~~-ggqvlVf~~~v~~ie~l~~~L~~~~----------- 516 (835)
.+...+...+.+ ...|+||+=++++||..+-.+.++.
T Consensus 339 ~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 339 VLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred HhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 222333333333 3479999999998888765544321
Q ss_pred -----------------CC---------CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 517 -----------------PG---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 517 -----------------p~---------~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
|. ..++++|+|+-+--++-+.--|.+|-+++|+||-.++.|+|.| +.+|+...
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~ 497 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTA 497 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEee
Confidence 11 2689999999999999999999999999999999999999999 89998876
Q ss_pred CCCC--------CHhHHHHHhcccCCCC--CceEEEEEecCC
Q 003268 571 VQQF--------GLAQLYQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 571 ~p~~--------sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
+..| +--+|+|+.|||||.| ..|.|++++++.
T Consensus 498 ~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 498 VRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 6655 3467999999999998 569999998754
No 97
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=250.90 Aligned_cols=306 Identities=25% Similarity=0.329 Sum_probs=223.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHH
Q 003268 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 271 ~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~ 350 (835)
..+....+||+|-+.|++||..+.+ +..++|.|+|.+|||.+|-.|+..+...+.+++|..|-++|.+|.++.
T Consensus 287 Vpe~a~~~pFelD~FQk~Ai~~ler-------g~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 287 VPEMALIYPFELDTFQKEAIYHLER-------GDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred chhHHhhCCCCccHHHHHHHHHHHc-------CCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHH
Confidence 3456677999999999999988754 567999999999999999998888877889999999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc-----ccccccEEEecccccc-----chh
Q 003268 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRF-----GVK 420 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l-----~~~~l~lVIIDEaHr~-----g~~ 420 (835)
|++.|+. |++++|+.... -.+.++|.|.+.|...+ ..+++.+||+||+|-. |+-
T Consensus 360 Fk~tF~D-----vgLlTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvV 423 (1248)
T KOG0947|consen 360 FKETFGD-----VGLLTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVV 423 (1248)
T ss_pred HHHhccc-----cceeecceeeC-----------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccccccc
Confidence 9998864 45888864321 35789999998886532 2478999999999986 554
Q ss_pred hHHHHHhhcCCceEEEeecCCChhhHHHH-HhcC---CCcceeeCCCCCccceeEEeccc--------------------
Q 003268 421 QKEKIASFKISVDVLTLSATPIPRTLYLA-LTGF---RDASLISTPPPERLPIKTHLSAF-------------------- 476 (835)
Q Consensus 421 ~~e~l~~~~~~~~vL~lSATp~p~tl~~~-~~~~---~d~s~i~~~p~~r~~V~~~~~~~-------------------- 476 (835)
..+.+.-++.++++|++|||. |++..++ +.|- +...++.+. ....|.+.++...
T Consensus 424 WEEViIMlP~HV~~IlLSATV-PN~~EFA~WIGRtK~K~IyViST~-kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~ 501 (1248)
T KOG0947|consen 424 WEEVIIMLPRHVNFILLSATV-PNTLEFADWIGRTKQKTIYVISTS-KRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKD 501 (1248)
T ss_pred ceeeeeeccccceEEEEeccC-CChHHHHHHhhhccCceEEEEecC-CCccceEEEEEeccceehhhcccchhhhhcchh
Confidence 456677788999999999996 4444433 2221 222233221 1111111111000
Q ss_pred -----------------------------------------------CH--HHHHHHHHHHHhc-CCeEEEEecCccChH
Q 003268 477 -----------------------------------------------SK--EKVISAIKYELDR-GGQVFYVLPRIKGLE 506 (835)
Q Consensus 477 -----------------------------------------------~~--~~~~~~i~~~l~~-ggqvlVf~~~v~~ie 506 (835)
.. ..+.+.+.....+ --.++|||=+++.|+
T Consensus 502 a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCd 581 (1248)
T KOG0947|consen 502 AKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCD 581 (1248)
T ss_pred hhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHH
Confidence 00 0122222211111 136889999999999
Q ss_pred HHHHHHHhh---------------------C-------CC---------CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEE
Q 003268 507 EPMDFLQQA---------------------F-------PG---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILI 549 (835)
Q Consensus 507 ~l~~~L~~~---------------------~-------p~---------~~V~~lHG~m~~~ere~vl~~F~~g~~~VLV 549 (835)
+.+++|... + |. ..++++||++-+--++-|..-|..|-++||+
T Consensus 582 e~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 582 EYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 988887542 1 11 2689999999999999999999999999999
Q ss_pred ECCcCccCCCCCCcCEEEEecCCC--------CCHhHHHHHhcccCCCC--CceEEEEEecCC
Q 003268 550 CTNIVESGLDIQNANTIIVQDVQQ--------FGLAQLYQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 550 aT~iie~GIDIp~v~~VIi~d~p~--------~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
||-.+++|||.| +++||.....+ .++.+|+|++|||||.| ..|+++++....
T Consensus 662 ATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 662 ATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999999999999 88888754432 25689999999999998 679998888765
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=5.2e-24 Score=252.55 Aligned_cols=309 Identities=21% Similarity=0.239 Sum_probs=223.1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~ 351 (835)
+.........|++.|.-+.-.+. + | .|....||+|||+++.+|++.....|++|.|++||-.||.|+++.+
T Consensus 71 Ea~~R~~g~~~~dvQlig~l~l~----~---G--~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 71 EGAKRVLGLRPFDVQIIGGIVLH----E---G--NIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred HHHHHHhCCCCchhHHHHHHHHh----c---C--CcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHH
Confidence 34455677889999988754432 1 2 4899999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hcccc-------cccccEEEecccccc--
Q 003268 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVV-------YNNLGLLVVDEEQRF-- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l~-------~~~l~lVIIDEaHr~-- 417 (835)
...|..+ |++|+++.+..+..++...+ .+||++||..-+ .+.+. .+.+.+.||||+|.+
T Consensus 142 ~~~~~~L-Gl~vg~i~~~~~~~~r~~~y------~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi 214 (796)
T PRK12906 142 GELYRWL-GLTVGLNLNSMSPDEKRAAY------NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI 214 (796)
T ss_pred HHHHHhc-CCeEEEeCCCCCHHHHHHHh------cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee
Confidence 9877665 89999999988887776555 489999998654 23222 356789999999931
Q ss_pred ----------c---------------hhh-HH--------------------------------HHHhh-----------
Q 003268 418 ----------G---------------VKQ-KE--------------------------------KIASF----------- 428 (835)
Q Consensus 418 ----------g---------------~~~-~e--------------------------------~l~~~----------- 428 (835)
| +.. .+ .+..+
T Consensus 215 DeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~ 294 (796)
T PRK12906 215 DEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSEN 294 (796)
T ss_pred ccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchh
Confidence 0 000 00 00000
Q ss_pred -----------------c-------------------------------------------------------------C
Q 003268 429 -----------------K-------------------------------------------------------------I 430 (835)
Q Consensus 429 -----------------~-------------------------------------------------------------~ 430 (835)
. .
T Consensus 295 ~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~ 374 (796)
T PRK12906 295 TALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRM 374 (796)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHh
Confidence 0 0
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC---ccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCccC
Q 003268 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKG 504 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~---r~~V~~~~~~~~~---~~~~~~i~~~l~~ggqvlVf~~~v~~ 504 (835)
..++-+||+|.... ...+....+..++.+|+.. |......+..... ..+.+.+......+.++||||++++.
T Consensus 375 Y~kl~GmTGTa~~e--~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 375 YKKLSGMTGTAKTE--EEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred cchhhccCCCCHHH--HHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 12233455554211 1112223344555555322 1111111211111 23334444444578899999999999
Q ss_pred hHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC---CcC-----EEEEecCCCCCH
Q 003268 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ---NAN-----TIIVQDVQQFGL 576 (835)
Q Consensus 505 ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp---~v~-----~VIi~d~p~~sl 576 (835)
++.+++.|.+. ++.+.++||++.+.+++.+...++.|. |+|||++++||+||+ +|. +||+++.|. +.
T Consensus 453 se~ls~~L~~~--gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pe-s~ 527 (796)
T PRK12906 453 SERLSHLLDEA--GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHE-SR 527 (796)
T ss_pred HHHHHHHHHHC--CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCC-cH
Confidence 99999999998 899999999999888888888887776 999999999999994 889 999999997 89
Q ss_pred hHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 577 AQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 577 ~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
..+.|++||+||.|.+|.+.+|++.++
T Consensus 528 ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 528 RIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999999999999988653
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=6.9e-24 Score=252.40 Aligned_cols=307 Identities=19% Similarity=0.221 Sum_probs=216.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+........|++.|.-..-.+. ...|..+.||+|||++|.+|++.....|++|.|++||..||.|+++.+.
T Consensus 73 a~~R~lg~~~~dvQlig~l~L~---------~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~ 143 (830)
T PRK12904 73 ASKRVLGMRHFDVQLIGGMVLH---------EGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMG 143 (830)
T ss_pred HHHHHhCCCCCccHHHhhHHhc---------CCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 3344567788899988754332 1248999999999999999997555578899999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-hc----cc-------ccccccEEEecccccc---
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-GS----RV-------VYNNLGLLVVDEEQRF--- 417 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-~~----~l-------~~~~l~lVIIDEaHr~--- 417 (835)
..+. +.|++|+++.++.+..++...+ .+||++|||+.| ++ .+ ..+.+.++||||+|.+
T Consensus 144 ~l~~-~LGlsv~~i~~~~~~~er~~~y------~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID 216 (830)
T PRK12904 144 PLYE-FLGLSVGVILSGMSPEERREAY------AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID 216 (830)
T ss_pred HHHh-hcCCeEEEEcCCCCHHHHHHhc------CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec
Confidence 8554 4489999999998888766654 289999999888 32 22 3567889999999942
Q ss_pred -------------------------------------------------chhhHHHH----------------------H
Q 003268 418 -------------------------------------------------GVKQKEKI----------------------A 426 (835)
Q Consensus 418 -------------------------------------------------g~~~~e~l----------------------~ 426 (835)
|....+.+ .
T Consensus 217 eArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~ 296 (830)
T PRK12904 217 EARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALR 296 (830)
T ss_pred cCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHH
Confidence 00000000 0
Q ss_pred hh----------------------------------------------------------------cCCceEEEeecCCC
Q 003268 427 SF----------------------------------------------------------------KISVDVLTLSATPI 442 (835)
Q Consensus 427 ~~----------------------------------------------------------------~~~~~vL~lSATp~ 442 (835)
.. +...++.+||+|..
T Consensus 297 A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~ 376 (830)
T PRK12904 297 AHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTAD 376 (830)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcH
Confidence 00 00123455666653
Q ss_pred hhhHHHHHhcCCCcceeeCCCCC---ccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC
Q 003268 443 PRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 516 (835)
Q Consensus 443 p~tl~~~~~~~~d~s~i~~~p~~---r~~V~~~~~~~~~---~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~ 516 (835)
. ....+....+..++.+|+.. |......+..... ..+.+.+.+....+.+|||||++++.++.+++.|...
T Consensus 377 t--e~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~- 453 (830)
T PRK12904 377 T--EAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA- 453 (830)
T ss_pred H--HHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-
Confidence 2 22233334455566655432 2211112221111 2233334333466789999999999999999999998
Q ss_pred CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc---------------------------------
Q 003268 517 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA--------------------------------- 563 (835)
Q Consensus 517 p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v--------------------------------- 563 (835)
++.+..+||+ +.+|+..+.+|..+...|+|||++++||+||+--
T Consensus 454 -gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 530 (830)
T PRK12904 454 -GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEV 530 (830)
T ss_pred -CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhH
Confidence 8999999996 7899999999999999999999999999999832
Q ss_pred -----CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 564 -----NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 564 -----~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
=+||....+. |..--.|.+||+||.|.+|.+-+|++-+
T Consensus 531 ~~~GGLhVigTerhe-srRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 531 LEAGGLHVIGTERHE-SRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred HHcCCCEEEecccCc-hHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 1455444443 5555689999999999999998888744
No 100
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.8e-23 Score=247.29 Aligned_cols=302 Identities=21% Similarity=0.263 Sum_probs=210.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC-----------CEEEEEcccHHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----------KQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g-----------~qvlVLvPtr~La~Q~~~ 349 (835)
.++++|.+..+..+.. ..++++|||||+|||.++++-+++.+..+ .++++++|.++|++.+..
T Consensus 309 sLNrIQS~v~daAl~~------~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vg 382 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALRG------DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVG 382 (1674)
T ss_pred hhhHHHHHHHHHHhcC------cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHH
Confidence 5789999999888752 35799999999999999999999887543 378999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh---h-c--cccc-ccccEEEeccccccchh--
Q 003268 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL---G-S--RVVY-NNLGLLVVDEEQRFGVK-- 420 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L---~-~--~l~~-~~l~lVIIDEaHr~g~~-- 420 (835)
.|.+++..+ |++|+-++|..+..- +++ ...+|+||||+.. . + +... .-+.++||||.|.....
T Consensus 383 sfSkRla~~-GI~V~ElTgD~~l~~--~qi-----eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRG 454 (1674)
T KOG0951|consen 383 SFSKRLAPL-GITVLELTGDSQLGK--EQI-----EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRG 454 (1674)
T ss_pred HHHhhcccc-CcEEEEecccccchh--hhh-----hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccc
Confidence 999999998 899999999754321 122 2378999999865 1 1 1122 35689999999986321
Q ss_pred -hHHHH--------HhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCC-CCccceeEEecc---cC--------HH
Q 003268 421 -QKEKI--------ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERLPIKTHLSA---FS--------KE 479 (835)
Q Consensus 421 -~~e~l--------~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p-~~r~~V~~~~~~---~~--------~~ 479 (835)
..+.+ ..-..+.+++++|||.+.-.---.........++...+ -...|+.+.+.. .. .+
T Consensus 455 pvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe 534 (1674)
T KOG0951|consen 455 PVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNE 534 (1674)
T ss_pred hHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHH
Confidence 12111 11235789999999985433211111111111111111 122333332211 11 12
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC-----------------------------C------CCcEEEE
Q 003268 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-----------------------------P------GVDIAIA 524 (835)
Q Consensus 480 ~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~-----------------------------p------~~~V~~l 524 (835)
...+.+.+...+ +||+||+.+++++-+.|+.+++.+ | .++++++
T Consensus 535 ~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIH 613 (1674)
T KOG0951|consen 535 ACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIH 613 (1674)
T ss_pred HHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceee
Confidence 233444444444 899999999888777776665211 1 2579999
Q ss_pred cCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC----------CHhHHHHHhcccCCCC--Cc
Q 003268 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----------GLAQLYQLRGRVGRAD--KE 592 (835)
Q Consensus 525 HG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~----------sl~~l~Qr~GRaGR~g--~~ 592 (835)
|+||+..+|+.+.+.|.+|.++|||+|..++.|+|+| +++||+-+..-| ++.+..||.|||||.+ ..
T Consensus 614 hAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~ 692 (1674)
T KOG0951|consen 614 HAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTC 692 (1674)
T ss_pred ccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcC
Confidence 9999999999999999999999999999999999999 899998554322 4668899999999987 33
Q ss_pred eEEEEE
Q 003268 593 AHAYLF 598 (835)
Q Consensus 593 G~ay~l 598 (835)
|..++.
T Consensus 693 gegiii 698 (1674)
T KOG0951|consen 693 GEGIII 698 (1674)
T ss_pred Cceeec
Confidence 444444
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.2e-23 Score=250.51 Aligned_cols=318 Identities=19% Similarity=0.195 Sum_probs=214.3
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
......+.+.|.-.--.+. ...|..++||+|||++|.+|++..+..|+.|+|++||++||.|.++.+...
T Consensus 77 R~lg~~~ydvQliGg~~Lh---------~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l- 146 (896)
T PRK13104 77 RTLGLRHFDVQLIGGMVLH---------EGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPI- 146 (896)
T ss_pred HHcCCCcchHHHhhhhhhc---------cCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHH-
Confidence 3456678888977644332 224899999999999999999977778889999999999999999999984
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-h----ccccc-------ccccEEEecccccc------
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----SRVVY-------NNLGLLVVDEEQRF------ 417 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-~----~~l~~-------~~l~lVIIDEaHr~------ 417 (835)
..+.|++|+++.++.+..++...+ .+||+||||+.| + +.+.+ +.+.++||||+|.+
T Consensus 147 ~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeAr 220 (896)
T PRK13104 147 YEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEAR 220 (896)
T ss_pred hcccCceEEEEeCCCCHHHHHHHh------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccC
Confidence 455589999999988877665444 489999999987 2 23222 57899999999952
Q ss_pred ------ch--------hh-HHHHHhhcC--------------C-------------------------------------
Q 003268 418 ------GV--------KQ-KEKIASFKI--------------S------------------------------------- 431 (835)
Q Consensus 418 ------g~--------~~-~e~l~~~~~--------------~------------------------------------- 431 (835)
|. .. ...+..+.. .
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~ 300 (896)
T PRK13104 221 TPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIM 300 (896)
T ss_pred CceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhh
Confidence 00 00 000111100 0
Q ss_pred -------------------------------------------------------------------------------c
Q 003268 432 -------------------------------------------------------------------------------V 432 (835)
Q Consensus 432 -------------------------------------------------------------------------------~ 432 (835)
.
T Consensus 301 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~ 380 (896)
T PRK13104 301 LMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYN 380 (896)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcc
Confidence 1
Q ss_pred eEEEeecCCChhhHHHHHhcCCCcceeeCCCC---CccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCccChH
Q 003268 433 DVLTLSATPIPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLE 506 (835)
Q Consensus 433 ~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~---~r~~V~~~~~~~~~---~~~~~~i~~~l~~ggqvlVf~~~v~~ie 506 (835)
++-+||+|.... ...+..+.+..++.+|+. .|......+..... ..+.+.+.+....|..|||||++++.++
T Consensus 381 kLsGMTGTa~te--~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE 458 (896)
T PRK13104 381 KLSGMTGTADTE--AYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASE 458 (896)
T ss_pred hhccCCCCChhH--HHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 112222222111 111111223333333322 12222222221111 2344445555578899999999999999
Q ss_pred HHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc-----------------------
Q 003268 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA----------------------- 563 (835)
Q Consensus 507 ~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v----------------------- 563 (835)
.+++.|... ++...++||++.+.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 459 ~ls~~L~~~--gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 459 FLSQLLKKE--NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHc--CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 999999998 899999999999999999999999995 99999999999999711
Q ss_pred ---------------CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC-CcCCHHHHHHHHHH
Q 003268 564 ---------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK-SLLSDQALERLAAL 616 (835)
Q Consensus 564 ---------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~-~~~~~~a~~rl~~i 616 (835)
=+||-..-+. |..--.|.+||+||.|.+|.+-+|++-+ ++......+++..+
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhe-srRID~QLrGRaGRQGDPGss~f~lSleD~l~~~f~~~~~~~~ 602 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHE-SRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLMRIFASERVASM 602 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCc-hHHHHHHhccccccCCCCCceEEEEEcCcHHHHHhChHHHHHH
Confidence 1344433332 4445679999999999999998888744 33333334444433
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=1.7e-23 Score=260.10 Aligned_cols=298 Identities=18% Similarity=0.247 Sum_probs=193.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
+.++++|.+||..+...+..+ .+..|++++||||||.+++..+...+.. .++||||||+++|+.|+.+.|.. +..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g--~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~-~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEG--QREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKD-TKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhc--cCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHh-ccc
Confidence 579999999999998776432 3578999999999999876665554433 47999999999999999999986 422
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc----------cccccccEEEeccccccc---------
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----------VVYNNLGLLVVDEEQRFG--------- 418 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~----------l~~~~l~lVIIDEaHr~g--------- 418 (835)
..+..+.-+.+..... ........+|+|+|...+.+. ..+..+++||||||||-.
T Consensus 489 ~~~~~~~~i~~i~~L~------~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 489 EGDQTFASIYDIKGLE------DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccchhhhhchhhhh------hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 1111111111100000 111223478999999876432 245678999999999942
Q ss_pred ----------hhhHHHHHhhcCCceEEEeecCCChhhHHHHHh---------cCCCcceeeCCCCCccc-----------
Q 003268 419 ----------VKQKEKIASFKISVDVLTLSATPIPRTLYLALT---------GFRDASLISTPPPERLP----------- 468 (835)
Q Consensus 419 ----------~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~---------~~~d~s~i~~~p~~r~~----------- 468 (835)
+.....+..+. +...|+|||||...+...+-. .+.+..++...|+-...
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhc-CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 12223333332 457899999997654332210 00111111000000000
Q ss_pred ----ee-----E-Ee--cccCH------H-------------HHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhh
Q 003268 469 ----IK-----T-HL--SAFSK------E-------------KVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 469 ----V~-----~-~~--~~~~~------~-------------~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~ 515 (835)
+. . .+ ..... . .+...+.+.+. .+++++|||.++++++.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00 0 00 00000 0 01111222222 2379999999999999999888765
Q ss_pred C----CC---CcEEEEcCCCCHHHHHHHHHHhhcCCe-eEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccC
Q 003268 516 F----PG---VDIAIAHGQQYSRQLEETMEKFAQGAI-KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 516 ~----p~---~~V~~lHG~m~~~ere~vl~~F~~g~~-~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaG 587 (835)
+ |+ ..+..+||+++ +++.++++|+++.. +|+|+++++.+|+|+|.+.+||.++++. |...|.|++||+.
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvk-S~~lf~QmIGRgt 798 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVR-SRILYEQMLGRAT 798 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCC-CHHHHHHHHhhhc
Confidence 3 33 25667899985 56789999999876 6999999999999999999999999986 9999999999999
Q ss_pred CCC
Q 003268 588 RAD 590 (835)
Q Consensus 588 R~g 590 (835)
|..
T Consensus 799 R~~ 801 (1123)
T PRK11448 799 RLC 801 (1123)
T ss_pred cCC
Confidence 964
No 103
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.92 E-value=1.6e-23 Score=248.35 Aligned_cols=276 Identities=16% Similarity=0.186 Sum_probs=213.9
Q ss_pred EEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCc
Q 003268 308 ICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHL 387 (835)
Q Consensus 308 I~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~ 387 (835)
..+.+|||||++|+..+...+..|+++|||+|...|+.|+.++|+++|+. ..|+.+++..+..++.+.|..+.+|++
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 33446999999999999999999999999999999999999999998852 568999999999999999999999999
Q ss_pred ceEecchHhhhcccccccccEEEeccccccchhhH----------HHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcc
Q 003268 388 NIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK----------EKIASFKISVDVLTLSATPIPRTLYLALTGFRDAS 457 (835)
Q Consensus 388 dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~----------e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s 457 (835)
+|||||.+.++ .++.++++|||||+|.-.+++. ..++....+..+|+.||||..++++.+..|+....
T Consensus 242 ~IViGtRSAvF--aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~~g~~~~~ 319 (665)
T PRK14873 242 RVVVGTRSAVF--APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVESGWAHDL 319 (665)
T ss_pred cEEEEcceeEE--eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHhcCcceee
Confidence 99999999887 6789999999999998544321 12333457899999999999999988877754421
Q ss_pred eee-CCCCCccc-eeEEec-------------ccCHHHHHHHHHHHHhcCCeEEEEecCc--------------------
Q 003268 458 LIS-TPPPERLP-IKTHLS-------------AFSKEKVISAIKYELDRGGQVFYVLPRI-------------------- 502 (835)
Q Consensus 458 ~i~-~~p~~r~~-V~~~~~-------------~~~~~~~~~~i~~~l~~ggqvlVf~~~v-------------------- 502 (835)
... .......| +...-. ..-...+.+++.+.+++| |+++|+|++
T Consensus 320 ~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C 398 (665)
T PRK14873 320 VAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARCRTPARCRHC 398 (665)
T ss_pred ccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcCeeECCCC
Confidence 111 00001111 111100 001235788999999999 999999872
Q ss_pred ---------------------------------------cChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC
Q 003268 503 ---------------------------------------KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG 543 (835)
Q Consensus 503 ---------------------------------------~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g 543 (835)
-++|++++.|...||+.+|..+.++ .++..|. +
T Consensus 399 ~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d-------~~l~~~~-~ 470 (665)
T PRK14873 399 TGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGD-------QVVDTVD-A 470 (665)
T ss_pred CCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChH-------HHHHhhc-c
Confidence 2578999999999999999876643 4788886 5
Q ss_pred CeeEEEECC----cCccCCCCCCcCEEEEecCCC------CC-----HhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 544 AIKILICTN----IVESGLDIQNANTIIVQDVQQ------FG-----LAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 544 ~~~VLVaT~----iie~GIDIp~v~~VIi~d~p~------~s-----l~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+.+|||+|+ +++ ++++.|++.|++. |. +..+.|..||+||.++.|.+++...++
T Consensus 471 ~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 471 GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 999999999 555 4678888877652 21 345789999999999999999876444
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.4e-24 Score=258.91 Aligned_cols=311 Identities=23% Similarity=0.283 Sum_probs=224.3
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.+...+||+|-++|++|+..+.+ +..+++|+|||+|||.++..++..++.+|.+++++.|.++|.+|.|+.|.
T Consensus 111 ~~~~~~~F~LD~fQ~~a~~~Ler-------~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~ 183 (1041)
T COG4581 111 PPAREYPFELDPFQQEAIAILER-------GESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLL 183 (1041)
T ss_pred cHHHhCCCCcCHHHHHHHHHHhC-------CCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHH
Confidence 45677899999999999988854 56899999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEeccccccch-----hhH
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV-----KQK 422 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~g~-----~~~ 422 (835)
.+|++. --.|++++|+.+.. +.+.++|.|-+.|.+. ..+.++..||+||+|.++. -..
T Consensus 184 ~~fgdv-~~~vGL~TGDv~IN-----------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE 251 (1041)
T COG4581 184 AKFGDV-ADMVGLMTGDVSIN-----------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE 251 (1041)
T ss_pred HHhhhh-hhhccceecceeeC-----------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH
Confidence 998754 23578899876542 5688999998877653 3356889999999998854 344
Q ss_pred HHHHhhcCCceEEEeecCCChhh-HHHHHhcC--CCcceeeCCCCCccceeEEeccc---------CH----HH---HHH
Q 003268 423 EKIASFKISVDVLTLSATPIPRT-LYLALTGF--RDASLISTPPPERLPIKTHLSAF---------SK----EK---VIS 483 (835)
Q Consensus 423 e~l~~~~~~~~vL~lSATp~p~t-l~~~~~~~--~d~s~i~~~p~~r~~V~~~~~~~---------~~----~~---~~~ 483 (835)
+.+..++..+++|+||||.+... +....... .+..++.+. ....|...++... .. .. ...
T Consensus 252 E~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~-~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~ 330 (1041)
T COG4581 252 EVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTE-HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANR 330 (1041)
T ss_pred HHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeec-CCCCCeEEEEecCCceeeeecccccchhhcchhhhh
Confidence 66777788899999999964322 22222222 223333321 1122222221100 00 00 000
Q ss_pred H--------------------------------------HHHHH--hcCCeEEEEecCccChHHHHHHHHhh--------
Q 003268 484 A--------------------------------------IKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQA-------- 515 (835)
Q Consensus 484 ~--------------------------------------i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~-------- 515 (835)
. +...+ .+.-.+++|+=++.+|+..+..+..+
T Consensus 331 ~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 331 SLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 0 11111 12246788887777776665443310
Q ss_pred ---------------------CC-C---------CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC
Q 003268 516 ---------------------FP-G---------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 516 ---------------------~p-~---------~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
.| + -.++++|++|-+..++.+...|..|-++|+++|.+.+.|+|+| ++
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-ar 489 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-AR 489 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-cc
Confidence 12 1 1467899999999999999999999999999999999999999 88
Q ss_pred EEEEecCCCC--------CHhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003268 565 TIIVQDVQQF--------GLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 565 ~VIi~d~p~~--------sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
+|+.....+| +..+|+|+.|||||.| ..|.+++..++...
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~ 539 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFES 539 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCC
Confidence 9988665544 4679999999999998 56888888665543
No 105
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.90 E-value=8.5e-22 Score=241.05 Aligned_cols=312 Identities=15% Similarity=0.249 Sum_probs=213.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
.++|+|.+++..+..-+ ..+.+.|++.++|.|||++++..+..... ..+.+|||||. .+..||.+++.. |.
T Consensus 169 ~Lr~YQleGlnWLi~l~---~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~k-w~- 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLY---ENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRR-FC- 242 (1033)
T ss_pred chHHHHHHHHHHHHHHH---hcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHH-HC-
Confidence 78999999999887633 23567899999999999987655433221 23578999997 556789999986 54
Q ss_pred CCCcEEEEecCCCCHHHHHHHHH-hHhcCCcceEecchHhhhcc---cccccccEEEeccccccchh---hHHHHHhhcC
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLD-MIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFGVK---QKEKIASFKI 430 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~-~l~~g~~dIIIgT~~~L~~~---l~~~~l~lVIIDEaHr~g~~---~~e~l~~~~~ 430 (835)
|.+++..++|.. .++..... .+..+.++|+|+|+..+... +.--++++|||||+|++... ....+..+.
T Consensus 243 -p~l~v~~~~G~~--~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~- 318 (1033)
T PLN03142 243 -PVLRAVKFHGNP--EERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFS- 318 (1033)
T ss_pred -CCCceEEEeCCH--HHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHhh-
Confidence 457888888743 33322222 23356799999999988643 22246789999999998442 233344443
Q ss_pred CceEEEeecCCChhhHHHHH--hcCCCccee-------------------------------------------eCCCCC
Q 003268 431 SVDVLTLSATPIPRTLYLAL--TGFRDASLI-------------------------------------------STPPPE 465 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~--~~~~d~s~i-------------------------------------------~~~p~~ 465 (835)
....+++||||....+...+ ..+..+..+ ..||..
T Consensus 319 a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~ 398 (1033)
T PLN03142 319 TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK 398 (1033)
T ss_pred cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce
Confidence 44568899999765432211 111111000 011111
Q ss_pred ccceeEEeccc-------------------------------------------------------------CHHHHHHH
Q 003268 466 RLPIKTHLSAF-------------------------------------------------------------SKEKVISA 484 (835)
Q Consensus 466 r~~V~~~~~~~-------------------------------------------------------------~~~~~~~~ 484 (835)
...+...+... .+-.++..
T Consensus 399 e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 399 ETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 11010000000 00001111
Q ss_pred -HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC---CeeEEEECCcCccCCCC
Q 003268 485 -IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESGLDI 560 (835)
Q Consensus 485 -i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g---~~~VLVaT~iie~GIDI 560 (835)
+......+.+|+||+.....++.+.+.|... ++.++.+||+++..+|+.+++.|.+. ...+|++|.+++.|||+
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc--CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 1122245679999999988888888888776 88999999999999999999999753 35679999999999999
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCCCc--eEEEEEecCCCcC
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSLL 605 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~~~~ 605 (835)
..+++||++|.+ |++....|++||+.|.|+. -.+|.|++..++.
T Consensus 557 t~Ad~VIiyD~d-WNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 557 ATADIVILYDSD-WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred hhCCEEEEeCCC-CChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 999999999998 8999999999999999954 6678888887764
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=4.4e-22 Score=240.89 Aligned_cols=313 Identities=19% Similarity=0.227 Sum_probs=208.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCC-cEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 281 EPTPDQKKAFLDVERDLTERETPM-DRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~-d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
...+.|..++..+.... .+. .+++.+|||+|||++++.++...... ..+++++.|+++++++++++++..+
T Consensus 195 ~~~~~~~~~~~~~~~~~----~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLE----KRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcc----cccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 45899999999888643 234 89999999999999999888876655 5789999999999999999999866
Q ss_pred cCCCCcEEEEecCCCCHHHHHHH----------HHhHhcCCcceEecchH-hhhccc---ccc-----cccEEEeccccc
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEH----------LDMIKHGHLNIIVGTHS-LLGSRV---VYN-----NLGLLVVDEEQR 416 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~----------l~~l~~g~~dIIIgT~~-~L~~~l---~~~-----~l~lVIIDEaHr 416 (835)
+.. ++....+++.....-.... .......-..++++|+- .+.... .+. -.+++|+||+|-
T Consensus 271 ~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~ 349 (733)
T COG1203 271 GLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL 349 (733)
T ss_pred ccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh
Confidence 554 2333313332211110000 00000011233333332 222111 111 136799999998
Q ss_pred cchh-hHHHHHh-----hcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC-----CccceeEEe-cccCHH---HH
Q 003268 417 FGVK-QKEKIAS-----FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-----ERLPIKTHL-SAFSKE---KV 481 (835)
Q Consensus 417 ~g~~-~~e~l~~-----~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~-----~r~~V~~~~-~~~~~~---~~ 481 (835)
+... ....+.. ...+..+|+||||+++--.............+..... +...+.... ...... ..
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 429 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEEL 429 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhh
Confidence 7554 3222211 1357899999999987655444433333222222111 111111110 011111 34
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhh----cCCeeEEEECCcCccC
Q 003268 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFA----QGAIKILICTNIVESG 557 (835)
Q Consensus 482 ~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~----~g~~~VLVaT~iie~G 557 (835)
...+...+..+.+++|+|||+..+.++++.|+...+ .+..+||++...+|++.++.+. .+...|+|||+++|.|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 555666778899999999999999999999999865 8999999999999988887544 5688999999999999
Q ss_pred CCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003268 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
+|+. .+.+|-.-+| +++++||+||++|.| ..|++|.+......
T Consensus 508 vDid-fd~mITe~aP---idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 508 VDID-FDVLITELAP---IDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred eccc-cCeeeecCCC---HHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 9998 8888865554 689999999999999 67888888765543
No 107
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=2.2e-20 Score=222.21 Aligned_cols=122 Identities=19% Similarity=0.348 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCC
Q 003268 479 EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558 (835)
Q Consensus 479 ~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GI 558 (835)
+.+.+.+.....++.+++|||++++.++.+++.|.+. ++.+..+||++++.+|.+++..|+.|+++|||||+++++|+
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~--gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL--GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh--ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 4667777777788999999999999999999999988 88999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEecCCCC----CHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 559 DIQNANTIIVQDVQQF----GLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 559 DIp~v~~VIi~d~p~~----sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+|++++||+++++.| +..+|+||+||+||. ..|.|+++++..+
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~ 554 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKIT 554 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCC
Confidence 9999999999985433 567999999999998 6899999998654
No 108
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.8e-21 Score=226.50 Aligned_cols=319 Identities=18% Similarity=0.204 Sum_probs=217.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHh
Q 003268 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 275 ~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
.......|++.|.-.--.+. ...|..+.||.|||++|.+|++.....|+.|.|++|+..||.|.++.+...
T Consensus 76 ~R~lgm~~ydVQliGgl~L~---------~G~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l 146 (908)
T PRK13107 76 KRVFEMRHFDVQLLGGMVLD---------SNRIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPL 146 (908)
T ss_pred HHHhCCCcCchHHhcchHhc---------CCccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 34566788899987643332 235899999999999999999887788889999999999999999999885
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-h----cccc-------cccccEEEecccccc-----
Q 003268 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-G----SRVV-------YNNLGLLVVDEEQRF----- 417 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-~----~~l~-------~~~l~lVIIDEaHr~----- 417 (835)
+. +.|++|+++.++.+..++... -.+||++||++.| + +.+. .+.+.++||||+|.+
T Consensus 147 ~~-~lGlsv~~i~~~~~~~~r~~~------Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEA 219 (908)
T PRK13107 147 FE-FLGLTVGINVAGLGQQEKKAA------YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEA 219 (908)
T ss_pred HH-hcCCeEEEecCCCCHHHHHhc------CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccC
Confidence 54 459999999998776544332 2489999999877 2 2221 256788999999941
Q ss_pred -------ch---------------hh------------------------------------HHHHH---h---------
Q 003268 418 -------GV---------------KQ------------------------------------KEKIA---S--------- 427 (835)
Q Consensus 418 -------g~---------------~~------------------------------------~e~l~---~--------- 427 (835)
|. .. .+.+. .
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~ 299 (908)
T PRK13107 220 RTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLY 299 (908)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccccc
Confidence 00 00 00000 0
Q ss_pred --------------------hcC---------------------------------------------------------
Q 003268 428 --------------------FKI--------------------------------------------------------- 430 (835)
Q Consensus 428 --------------------~~~--------------------------------------------------------- 430 (835)
+..
T Consensus 300 ~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (908)
T PRK13107 300 SAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQN 379 (908)
T ss_pred CchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHH
Confidence 000
Q ss_pred ----CceEEEeecCCChhhHHHHHhcCCCcceeeCCCC---CccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEec
Q 003268 431 ----SVDVLTLSATPIPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLP 500 (835)
Q Consensus 431 ----~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~---~r~~V~~~~~~~~~---~~~~~~i~~~l~~ggqvlVf~~ 500 (835)
..++-+||+|...... .+..+.+..++.+|+. .|......+..... ..+.+.+.+....|.+|||||+
T Consensus 380 fFr~Y~kL~GMTGTa~te~~--Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~ 457 (908)
T PRK13107 380 YFRQYEKLAGMTGTADTEAF--EFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTV 457 (908)
T ss_pred HHHhhhHhhcccCCChHHHH--HHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0122334444322111 1222334445555432 22222222221111 2445555556678899999999
Q ss_pred CccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc-----------------
Q 003268 501 RIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA----------------- 563 (835)
Q Consensus 501 ~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v----------------- 563 (835)
+++.++.++..|... ++...++|+++++.+++.+.+.|+.|. |+|||++++||+||.=-
T Consensus 458 sv~~se~ls~~L~~~--gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 458 SIEQSELLARLMVKE--KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred cHHHHHHHHHHHHHC--CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 999999999999998 899999999999999999999999998 99999999999999711
Q ss_pred --------------------CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC-cCCHHHHHHHHHH
Q 003268 564 --------------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS-LLSDQALERLAAL 616 (835)
Q Consensus 564 --------------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~-~~~~~a~~rl~~i 616 (835)
=+||-...+. |..--.|.+||+||.|.+|.+-+|++-++ +......+++..+
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerhe-SrRID~QLrGRaGRQGDPGss~f~lSlED~L~r~f~~~~~~~~ 606 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHE-SRRIDNQLRGRAGRQGDAGSSRFYLSMEDSLMRIFASDRVSGM 606 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCc-hHHHHhhhhcccccCCCCCceeEEEEeCcHHHHHhChHHHHHH
Confidence 1455444443 44556799999999999999988887443 3333333444433
No 109
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=9.1e-21 Score=225.67 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
||.+||+|.++++.+.. +.+++.+++||+|||++|++|++..+..+..++||+||++||.|.++.+.. +..+
T Consensus 90 p~~~tp~qvQ~I~~i~l-------~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~-L~k~ 161 (970)
T PRK12899 90 QWDMVPYDVQILGAIAM-------HKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGS-VLRW 161 (970)
T ss_pred CCCCChHHHHHhhhhhc-------CCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHH-HHhh
Confidence 34469999999998864 467999999999999999999997766677799999999999999999987 5556
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-hcc-----ccc-------ccccEEEeccccc
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-GSR-----VVY-------NNLGLLVVDEEQR 416 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-~~~-----l~~-------~~l~lVIIDEaHr 416 (835)
.|++++++.|+.+..++...+ .+||+||||+.| ++. +.+ +.+.++||||||.
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIY------QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHc------CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 689999999998877654332 389999999988 432 222 2457999999996
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.4e-20 Score=208.71 Aligned_cols=166 Identities=17% Similarity=0.245 Sum_probs=131.2
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEec--ccCHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 003268 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLS--AFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~--~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l 508 (835)
..|+|.+||||.+-.+..+...+ ... .+.|.+-.+-...+. .-.-++++..|.....++.+++|-+-+++.+|.+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~v--veQ-iIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdL 462 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNV--VEQ-IIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDL 462 (663)
T ss_pred cCCEEEEECCCChHHHHhccCce--eEE-eecCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHH
Confidence 46899999999775544332111 011 112222222112222 2234678888999899999999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC----CHhHHHHHhc
Q 003268 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----GLAQLYQLRG 584 (835)
Q Consensus 509 ~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~----sl~~l~Qr~G 584 (835)
.++|.+. |++|..+|++...-+|-+++.+++.|+++|||+-+.+-.|+|+|.|..|.+.|++.- |-.+++|-+|
T Consensus 463 T~Yl~e~--gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIG 540 (663)
T COG0556 463 TEYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIG 540 (663)
T ss_pred HHHHHhc--CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999853 4578999999
Q ss_pred ccCCCCCceEEEEEecCC
Q 003268 585 RVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 585 RaGR~g~~G~ay~l~~~~ 602 (835)
||.|. -.|.++++.+.-
T Consensus 541 RAARN-~~GkvIlYAD~i 557 (663)
T COG0556 541 RAARN-VNGKVILYADKI 557 (663)
T ss_pred HHhhc-cCCeEEEEchhh
Confidence 99996 679999887643
No 111
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=5.9e-19 Score=211.06 Aligned_cols=121 Identities=20% Similarity=0.360 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCC
Q 003268 479 EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558 (835)
Q Consensus 479 ~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GI 558 (835)
+.+.+.+......+.+++|||++...++.+++.|.+. ++.+..+||++++.+|..++..|+.|.++|||||+++++|+
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~--gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL--GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc--ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 4567777777788999999999999999999999988 89999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEecCCCC----CHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 559 DIQNANTIIVQDVQQF----GLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 559 DIp~v~~VIi~d~p~~----sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
|+|++++||+++.+.| +..+|+||+||+||. ..|.|++|++..
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 9999999999997543 568899999999996 789999999854
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.84 E-value=1.4e-19 Score=185.59 Aligned_cols=182 Identities=26% Similarity=0.220 Sum_probs=138.9
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-----CCEEEEEc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLA 338 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-----g~qvlVLv 338 (835)
++.++ +.+.+.+.+...|++.|.+|++.+.+ ++++++++|||+|||++++.+++..+.. +.+++|++
T Consensus 4 ~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~ 76 (203)
T cd00268 4 LGLSPELLRGIYALGFEKPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILA 76 (203)
T ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEc
Confidence 34444 77788776666899999999999864 5789999999999999998888876543 46899999
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecc
Q 003268 339 PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDE 413 (835)
Q Consensus 339 Ptr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDE 413 (835)
|+++|+.|+.+.+.. +....++++..++++.+..+....+ . +.++|+|+|+..+.. ...+++++++|+||
T Consensus 77 p~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 77 PTRELALQIAEVARK-LGKHTNLKVVVIYGGTSIDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred CCHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeC
Confidence 999999999999987 5444478899999887765543333 2 468999999986643 34568899999999
Q ss_pred ccccchh-----hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcce
Q 003268 414 EQRFGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 458 (835)
Q Consensus 414 aHr~g~~-----~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~ 458 (835)
+|.+... ....+..+....+++++|||+++....+......++..
T Consensus 152 ~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~ 201 (203)
T cd00268 152 ADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVR 201 (203)
T ss_pred hHHhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 9986421 22334455668999999999998776666665555443
No 113
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=4.6e-20 Score=216.24 Aligned_cols=310 Identities=19% Similarity=0.219 Sum_probs=210.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH-HHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~-~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
+.-.+..+|.+|+..= .+ ..+.++|...||+.|||+++-+.++. .+...+.++.+.|-...++.....+...+.
T Consensus 220 gi~~~fewq~ecls~~--~~---~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~ 294 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLP--RL---LERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSI 294 (1008)
T ss_pred hHHHHHHHHHHHhcch--hh---hcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcc
Confidence 3346678899986421 11 12579999999999999999666654 456678899999999999998888887444
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-------hcccccccccEEEeccccccchhhHHHH----
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-------GSRVVYNNLGLLVVDEEQRFGVKQKEKI---- 425 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-------~~~l~~~~l~lVIIDEaHr~g~~~~e~l---- 425 (835)
.. |+.|....|..+...+. ...++.|+|-+.- .+.-.+..+|+|||||-|.+|.+.+..+
T Consensus 295 ~~-G~~ve~y~g~~~p~~~~--------k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~ 365 (1008)
T KOG0950|consen 295 DL-GFPVEEYAGRFPPEKRR--------KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL 365 (1008)
T ss_pred cc-CCcchhhcccCCCCCcc--------cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH
Confidence 44 78887777755544322 2357889996522 2223466789999999999876544221
Q ss_pred -H-----hhcCCceEEEeecCCChhhHH-HHHh---c---CCCcceeeCCCCC-------cccee--------EEecccC
Q 003268 426 -A-----SFKISVDVLTLSATPIPRTLY-LALT---G---FRDASLISTPPPE-------RLPIK--------THLSAFS 477 (835)
Q Consensus 426 -~-----~~~~~~~vL~lSATp~p~tl~-~~~~---~---~~d~s~i~~~p~~-------r~~V~--------~~~~~~~ 477 (835)
. .....+++|+||||.+...+- .++. + ++...+....-.+ +..+. ......+
T Consensus 366 l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 366 LAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred HHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 1 123457899999997544321 1111 1 1111111100000 00000 0011112
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC------------------------------------CCcE
Q 003268 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP------------------------------------GVDI 521 (835)
Q Consensus 478 ~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p------------------------------------~~~V 521 (835)
++.+...+.+.+.++.++++||+++..|+.++..+...+| .+.+
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~Gv 525 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGV 525 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccc
Confidence 2344455556667778899999999999988755543221 1378
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC-----CHhHHHHHhcccCCCC--CceE
Q 003268 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF-----GLAQLYQLRGRVGRAD--KEAH 594 (835)
Q Consensus 522 ~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~-----sl~~l~Qr~GRaGR~g--~~G~ 594 (835)
+++|++++.++|+.+...|++|...|++||+.++.|+|.| ++.||+- +|.+ +..+|.|++|||||.| ..|.
T Consensus 526 AyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLP-ArRVIir-aP~~g~~~l~~~~YkQM~GRAGR~gidT~Gd 603 (1008)
T KOG0950|consen 526 AYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLP-ARRVIIR-APYVGREFLTRLEYKQMVGRAGRTGIDTLGD 603 (1008)
T ss_pred eecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCC-cceeEEe-CCccccchhhhhhHHhhhhhhhhcccccCcc
Confidence 9999999999999999999999999999999999999999 7777653 3323 4568999999999998 5699
Q ss_pred EEEEecCCC
Q 003268 595 AYLFYPDKS 603 (835)
Q Consensus 595 ay~l~~~~~ 603 (835)
+++++.+.+
T Consensus 604 siLI~k~~e 612 (1008)
T KOG0950|consen 604 SILIIKSSE 612 (1008)
T ss_pred eEEEeeccc
Confidence 999987664
No 114
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=2.8e-18 Score=196.50 Aligned_cols=313 Identities=19% Similarity=0.243 Sum_probs=218.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH--HHHHHHh-CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR--AIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~--a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
..++++|.+.++++..-+ ..+-+.|+...+|-|||++.+. ..++... ..+..+|++|...|. .|.++|+. |.
T Consensus 166 g~lr~YQveGlnWLi~l~---engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~r-f~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLY---ENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKR-FT 240 (971)
T ss_pred CccchhhhccHHHHHHHH---hcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHH-hC
Confidence 479999999999988744 3367899999999999998543 3333322 246789999998876 56777875 65
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHh-cCCcceEecchHhhhccc---ccccccEEEeccccccchhh---HHHHHhhc
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIK-HGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRFGVKQ---KEKIASFK 429 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~-~g~~dIIIgT~~~L~~~l---~~~~l~lVIIDEaHr~g~~~---~e~l~~~~ 429 (835)
|++++.+++|. ..++....+.+. .|..+|+|+|+++..++- .--++.++||||+||+-... .+.++.+
T Consensus 241 --P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f- 315 (971)
T KOG0385|consen 241 --PSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREF- 315 (971)
T ss_pred --CCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHh-
Confidence 57999999994 456665555544 568999999999886542 22468899999999985433 2334444
Q ss_pred CCceEEEeecCCChhhHHHHHhc--CCCccee-------------------------------------------eCCCC
Q 003268 430 ISVDVLTLSATPIPRTLYLALTG--FRDASLI-------------------------------------------STPPP 464 (835)
Q Consensus 430 ~~~~vL~lSATp~p~tl~~~~~~--~~d~s~i-------------------------------------------~~~p~ 464 (835)
.....|++|+||....++..+.- +.-+-++ ..||.
T Consensus 316 ~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 316 KTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred cccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 44566789999976544322111 0000000 01111
Q ss_pred Ccccee----------------------------------------------EEec-------ccC----------HHHH
Q 003268 465 ERLPIK----------------------------------------------THLS-------AFS----------KEKV 481 (835)
Q Consensus 465 ~r~~V~----------------------------------------------~~~~-------~~~----------~~~~ 481 (835)
....+- .|+. ++. +-.+
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 100000 0000 000 0022
Q ss_pred HHHHH-HHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC---CeeEEEECCcCccC
Q 003268 482 ISAIK-YELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESG 557 (835)
Q Consensus 482 ~~~i~-~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g---~~~VLVaT~iie~G 557 (835)
++.++ +..++|.+|++|..-....+-+.+++.-+ ++..+.+.|+++-++|...++.|... ..-+|++|-+.+-|
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R--~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLG 553 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLR--GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLG 553 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhc--CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccc
Confidence 33333 33466889999987766666666665545 89999999999999999999999865 35579999999999
Q ss_pred CCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCcC
Q 003268 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLL 605 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~~ 605 (835)
||+..+++||.||.+ |++..-.|..-||.|.| ++-.+|.|++...+.
T Consensus 554 INL~aADtVIlyDSD-WNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 554 INLTAADTVILYDSD-WNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccccEEEEecCC-CCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999998 89999999999999999 457789999988764
No 115
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=1.5e-19 Score=179.13 Aligned_cols=149 Identities=26% Similarity=0.376 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCC--EEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~--qvlVLvPtr~La~Q~~~~~~~~f~~~~g 360 (835)
||.|.++++.+.. +++++++||||+|||++++.+++..+.+++ ++++++|+++|+.|+++++...+.. ++
T Consensus 1 t~~Q~~~~~~i~~-------~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-------GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TN 72 (169)
T ss_dssp -HHHHHHHHHHHT-------TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TT
T ss_pred CHHHHHHHHHHHc-------CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cc
Confidence 7999999999873 478999999999999999999998776655 9999999999999999999986554 56
Q ss_pred cEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc-----ccccccEEEeccccccchh-hH---HH-HHhh--
Q 003268 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFGVK-QK---EK-IASF-- 428 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l-----~~~~l~lVIIDEaHr~g~~-~~---e~-l~~~-- 428 (835)
+++..++++.+...... ..+ .+.++|+|+||+.+...+ .+.++++||+||+|.+... .. .. +..+
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQR--EVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp SSEEEESTTSCHHHHHH--HHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccc--ccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 88999998877542221 112 456999999999886432 4566999999999998652 11 22 2222
Q ss_pred cCCceEEEeecCCC
Q 003268 429 KISVDVLTLSATPI 442 (835)
Q Consensus 429 ~~~~~vL~lSATp~ 442 (835)
..+.+++++|||+.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 23689999999997
No 116
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.82 E-value=5.8e-19 Score=210.31 Aligned_cols=356 Identities=18% Similarity=0.249 Sum_probs=250.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCCCC------CCCChHHHHHHHhCCC----CCCHHHHHHHHHHHHhhhcCCCCCcEEEE
Q 003268 240 KVAIQKMVVDLMELYLHRLKQKRPP------YPKNPAIAEFAAQFPY----EPTPDQKKAFLDVERDLTERETPMDRLIC 309 (835)
Q Consensus 240 ~~~~~~~~~~l~~l~~~r~~~~~~~------~~~~~~~~~~~~~~~~----~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~ 309 (835)
...|...+...++.|..|...+..+ .+..+-+..++.+-.| +++.+|.+.+++++..|.. +.++|+.
T Consensus 319 ~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~---~~n~ILA 395 (1373)
T KOG0384|consen 319 AEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYK---RNNCILA 395 (1373)
T ss_pred hhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHh---cccceeh
Confidence 3445555666777888886543322 1334456667776665 9999999999999988864 5789999
Q ss_pred ccCCCccHHH---HHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcC-
Q 003268 310 GDVGFGKTEV---ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG- 385 (835)
Q Consensus 310 g~TGsGKT~v---al~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g- 385 (835)
...|-|||.+ ||..++....-.+..||+||...++ .|.++|... .+.++.+++|.....+-.++++....+
T Consensus 396 DEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w----~~mn~i~y~g~~~sr~~i~~ye~~~~~~ 470 (1373)
T KOG0384|consen 396 DEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETW----TDMNVIVYHGNLESRQLIRQYEFYHSSN 470 (1373)
T ss_pred hhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHH----hhhceeeeecchhHHHHHHHHHheecCC
Confidence 9999999987 5556665554456789999987665 456666653 258899999987766666666666555
Q ss_pred ----CcceEecchHhhhcccc-c--ccccEEEeccccccchh---hHHHHHhhcCCceEEEeecCCChhhHHHH--HhcC
Q 003268 386 ----HLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRFGVK---QKEKIASFKISVDVLTLSATPIPRTLYLA--LTGF 453 (835)
Q Consensus 386 ----~~dIIIgT~~~L~~~l~-~--~~l~lVIIDEaHr~g~~---~~e~l~~~~~~~~vL~lSATp~p~tl~~~--~~~~ 453 (835)
+++++++|+..+.++.. + -++.+++||||||+-.. ..+.+..++.+ +.|++|+||..+.+... +..+
T Consensus 471 ~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~-~rllitgTPlQNsikEL~sLl~F 549 (1373)
T KOG0384|consen 471 TKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMN-HRLLITGTPLQNSLKELWSLLHF 549 (1373)
T ss_pred ccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhccc-ceeeecCCCccccHHHHHHHhcc
Confidence 68999999999876533 2 35678999999998532 23445555444 55679999976543321 1222
Q ss_pred CCccee---------------------------------------eCCCCCccceeE-----------------------
Q 003268 454 RDASLI---------------------------------------STPPPERLPIKT----------------------- 471 (835)
Q Consensus 454 ~d~s~i---------------------------------------~~~p~~r~~V~~----------------------- 471 (835)
..+.-+ ..+|....-+..
T Consensus 550 l~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK 629 (1373)
T KOG0384|consen 550 LMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK 629 (1373)
T ss_pred cCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc
Confidence 111110 001110000000
Q ss_pred -----------------------EecccCHH------------HH-------------HHHHHHHH-hcCCeEEEEecCc
Q 003268 472 -----------------------HLSAFSKE------------KV-------------ISAIKYEL-DRGGQVFYVLPRI 502 (835)
Q Consensus 472 -----------------------~~~~~~~~------------~~-------------~~~i~~~l-~~ggqvlVf~~~v 502 (835)
++..-..+ .. ++.++-.| ..|.+||||..-+
T Consensus 630 G~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMV 709 (1373)
T KOG0384|consen 630 GAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMV 709 (1373)
T ss_pred cCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHH
Confidence 00000000 11 11111112 3468999999999
Q ss_pred cChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC---CeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHH
Q 003268 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 579 (835)
Q Consensus 503 ~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g---~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l 579 (835)
...+-++++|..+ ++..-.+.|.+..+.|++.++.|... .+-+|+||-+.+-|||+..++|||+||.+ |++..-
T Consensus 710 RmLDIL~eYL~~r--~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSD-WNPQND 786 (1373)
T KOG0384|consen 710 RMLDILAEYLSLR--GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSD-WNPQND 786 (1373)
T ss_pred HHHHHHHHHHHHc--CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCC-CCcchH
Confidence 9999999999988 89999999999999999999999864 56789999999999999999999999998 899999
Q ss_pred HHHhcccCCCCC--ceEEEEEecCCCcCCH
Q 003268 580 YQLRGRVGRADK--EAHAYLFYPDKSLLSD 607 (835)
Q Consensus 580 ~Qr~GRaGR~g~--~G~ay~l~~~~~~~~~ 607 (835)
.|...||.|.|+ .-.+|.|++...+..+
T Consensus 787 LQAqARaHRIGQkk~VnVYRLVTk~TvEeE 816 (1373)
T KOG0384|consen 787 LQAQARAHRIGQKKHVNVYRLVTKNTVEEE 816 (1373)
T ss_pred HHHHHHHHhhcccceEEEEEEecCCchHHH
Confidence 999999999995 4678999999887543
No 117
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=8.9e-20 Score=196.91 Aligned_cols=264 Identities=22% Similarity=0.276 Sum_probs=181.7
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcC---CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSK---YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR----- 400 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~---~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~----- 400 (835)
.+.++++|+-|.++|+.|.++.+.+ |.. .|.++-.++.++.-..+ +...+.+| .+|+||||+++.+.
T Consensus 284 pNap~avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmiggv~~r~---Q~~ql~~g-~~ivvGtpgRl~~~is~g~ 358 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIGGVLKRT---QCKQLKDG-THIVVGTPGRLLQPISKGL 358 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhhhHHhHH---HHHHhhcC-ceeeecCchhhhhhhhccc
Confidence 4567999999999999999996654 433 35566666777654443 55566777 99999999998754
Q ss_pred cccccccEEEeccccccch-hhHHHHHhh----------cCCceEEEeecCCChh-hHHHHHh--------cCCCcce--
Q 003268 401 VVYNNLGLLVVDEEQRFGV-KQKEKIASF----------KISVDVLTLSATPIPR-TLYLALT--------GFRDASL-- 458 (835)
Q Consensus 401 l~~~~l~lVIIDEaHr~g~-~~~e~l~~~----------~~~~~vL~lSATp~p~-tl~~~~~--------~~~d~s~-- 458 (835)
+.+..+.++|+||++-+.. .-.+.|-++ ....+.++.|||...- ...+... .++..-.
T Consensus 359 ~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 359 VTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred eeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 3567789999999998622 112223222 2356788999996311 0011100 0000000
Q ss_pred --------eeCCCCC------ccceeE-------E-----ecccCHHHHH---------HHHHHHHhcCCeEEEEecCcc
Q 003268 459 --------ISTPPPE------RLPIKT-------H-----LSAFSKEKVI---------SAIKYELDRGGQVFYVLPRIK 503 (835)
Q Consensus 459 --------i~~~p~~------r~~V~~-------~-----~~~~~~~~~~---------~~i~~~l~~ggqvlVf~~~v~ 503 (835)
...+... +.++.+ + .++....... .++.+ -.-.+.+|||.++.
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~--h~mdkaiifcrtk~ 516 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR--HAMDKAIIFCRTKQ 516 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh--hccCceEEEEeccc
Confidence 0000000 000100 0 1111111111 11111 12358999999999
Q ss_pred ChHHHHHHHHhhCC-CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHH
Q 003268 504 GLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 504 ~ie~l~~~L~~~~p-~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr 582 (835)
+|+.+.+++.+... .+.+.++||+..+.+|.+-++.|..++.++||||+++++|+||.++..||+...|. .-..|.||
T Consensus 517 dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd-~k~nyvhr 595 (725)
T KOG0349|consen 517 DCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPD-DKTNYVHR 595 (725)
T ss_pred cchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCc-ccchhhhh
Confidence 99999999987642 47899999999999999999999999999999999999999999999999999997 78899999
Q ss_pred hcccCCCCCceEEEEEec
Q 003268 583 RGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~ 600 (835)
+||+||+.+-|.++.++.
T Consensus 596 igrvgraermglaislva 613 (725)
T KOG0349|consen 596 IGRVGRAERMGLAISLVA 613 (725)
T ss_pred hhccchhhhcceeEEEee
Confidence 999999999999998875
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.9e-18 Score=203.43 Aligned_cols=283 Identities=24% Similarity=0.354 Sum_probs=208.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
+.+-|.+...+.|...|+-....+.+ +..+-+.||||.|||.-.+..++.....|+++++++||+.|+.|.++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~r-------g~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~ 143 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVR-------GKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYE 143 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHc-------CCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHH
Confidence 45677888889999999998888765 57899999999999998776666666778999999999999999999
Q ss_pred HHHHhhcC-C--CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc-c--ccccEEEecccccc------
Q 003268 350 VVSERFSK-Y--PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRF------ 417 (835)
Q Consensus 350 ~~~~~f~~-~--~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~-~--~~l~lVIIDEaHr~------ 417 (835)
++.+ |+. . ..+.+. +|+..+..+++..++.+.+|+.||+|+|.+.|.+++. + .++++|++|.+|-+
T Consensus 144 kl~~-~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskN 221 (1187)
T COG1110 144 RLKK-FAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKN 221 (1187)
T ss_pred HHHH-HHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcccc
Confidence 9987 442 2 134444 7888889999999999999999999999998876532 2 36899999999942
Q ss_pred --------chhhH--------HHH-------------H------------hhcCCceEEEeecCCChhhH----HHHHhc
Q 003268 418 --------GVKQK--------EKI-------------A------------SFKISVDVLTLSATPIPRTL----YLALTG 452 (835)
Q Consensus 418 --------g~~~~--------e~l-------------~------------~~~~~~~vL~lSATp~p~tl----~~~~~~ 452 (835)
|+... ..+ + +..+...++..|||..|+.. ...+.+
T Consensus 222 vDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg 301 (1187)
T COG1110 222 VDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG 301 (1187)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC
Confidence 43221 000 0 01245678899999877652 222333
Q ss_pred CCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecC---ccChHHHHHHHHhhCCCCcEEEEcCCCC
Q 003268 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPR---IKGLEEPMDFLQQAFPGVDIAIAHGQQY 529 (835)
Q Consensus 453 ~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~---v~~ie~l~~~L~~~~p~~~V~~lHG~m~ 529 (835)
+.-.+ ....-|.-+..++.....+.+.+.+. .+.. -.+||++. ++.++++++.|+.+ |+++..+|+.
T Consensus 302 FevG~---~~~~LRNIvD~y~~~~~~e~~~elvk-~lG~--GgLIfV~~d~G~e~aeel~e~Lr~~--Gi~a~~~~a~-- 371 (1187)
T COG1110 302 FEVGS---GGEGLRNIVDIYVESESLEKVVELVK-KLGD--GGLIFVPIDYGREKAEELAEYLRSH--GINAELIHAE-- 371 (1187)
T ss_pred CccCc---cchhhhheeeeeccCccHHHHHHHHH-HhCC--CeEEEEEcHHhHHHHHHHHHHHHhc--CceEEEeecc--
Confidence 32111 11112333455555433444444433 3444 45888888 77899999999998 9999999985
Q ss_pred HHHHHHHHHHhhcCCeeEEEEC----CcCccCCCCC-CcCEEEEecCCCC
Q 003268 530 SRQLEETMEKFAQGAIKILICT----NIVESGLDIQ-NANTIIVQDVQQF 574 (835)
Q Consensus 530 ~~ere~vl~~F~~g~~~VLVaT----~iie~GIDIp-~v~~VIi~d~p~~ 574 (835)
.++.++.|..|+++|||+. .++-+|||+| .++.+|.++.|++
T Consensus 372 ---~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 372 ---KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred ---chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 2678999999999999986 4799999999 5889999999954
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=9.9e-19 Score=209.82 Aligned_cols=296 Identities=18% Similarity=0.148 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCC---CCCcEEEEccCCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 281 EPTPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~---~~~d~LI~g~TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
-++++|..|+..+...+.... ..+..||+.+||||||.+++..+.... ....+++||+|++.|..|+.+.|.. +
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~-~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS-L 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh-h
Confidence 478999999999988764421 235789999999999999876665543 3457899999999999999999987 4
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc-------ccccc-cEEEeccccccchhhH-HHHH
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-------VYNNL-GLLVVDEEQRFGVKQK-EKIA 426 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l-------~~~~l-~lVIIDEaHr~g~~~~-e~l~ 426 (835)
... .. .+..+... ....+.+....|+|+|.+.+.+.+ ....- .+||+||||+..+... ..+.
T Consensus 317 ~~~-~~-----~~~~s~~~---L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~ 387 (667)
T TIGR00348 317 QKD-CA-----ERIESIAE---LKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK 387 (667)
T ss_pred CCC-CC-----cccCCHHH---HHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH
Confidence 321 01 11112222 223344455789999999886421 11111 2899999999876543 4455
Q ss_pred hhcCCceEEEeecCCChh----hHHHHHhcCCCcceeeCC------CCCccceeE-------Ee----------------
Q 003268 427 SFKISVDVLTLSATPIPR----TLYLALTGFRDASLISTP------PPERLPIKT-------HL---------------- 473 (835)
Q Consensus 427 ~~~~~~~vL~lSATp~p~----tl~~~~~~~~d~s~i~~~------p~~r~~V~~-------~~---------------- 473 (835)
...++...++|||||... +.......+.++ +.... ..-..|+.. .+
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~-i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRY-LHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCe-EEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 566788999999999642 211111000111 10000 000001000 00
Q ss_pred ----ccc-----------------CH---HHHHHHHHHHH-----hcCCeEEEEecCccChHHHHHHHHhhCCCC---cE
Q 003268 474 ----SAF-----------------SK---EKVISAIKYEL-----DRGGQVFYVLPRIKGLEEPMDFLQQAFPGV---DI 521 (835)
Q Consensus 474 ----~~~-----------------~~---~~~~~~i~~~l-----~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~---~V 521 (835)
... ++ ..+...+.+.. ..+++.+|||.++..|..+++.|.+.+|.. ..
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 000 00 00111111111 124899999999999999999988876543 44
Q ss_pred EEEcCCCCHH---------------------HHHHHHHHhhc-CCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHH
Q 003268 522 AIAHGQQYSR---------------------QLEETMEKFAQ-GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQL 579 (835)
Q Consensus 522 ~~lHG~m~~~---------------------ere~vl~~F~~-g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l 579 (835)
.++++..+.. ..+.++++|++ +..+|||+++++.+|+|.|.++++++..+-+ + ..+
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~-h~L 624 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-Y-HGL 624 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-c-cHH
Confidence 5566654322 22478889976 6889999999999999999999998876654 3 458
Q ss_pred HHHhcccCCC
Q 003268 580 YQLRGRVGRA 589 (835)
Q Consensus 580 ~Qr~GRaGR~ 589 (835)
+|.+||+.|.
T Consensus 625 lQai~R~nR~ 634 (667)
T TIGR00348 625 LQAIARTNRI 634 (667)
T ss_pred HHHHHHhccc
Confidence 9999999994
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.8e-18 Score=204.44 Aligned_cols=303 Identities=19% Similarity=0.270 Sum_probs=205.7
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.....+.+.|.-.--.+. ...|..+.||+|||+++.+|++.....|++|.|++|+-.||.|+++.+...|.
T Consensus 78 ~lGm~~ydVQliGg~~Lh---------~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 78 VMGMRHFDVQLIGGMTLH---------EGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred HhCCCcchhHHHhhhHhc---------cCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 445678899987644332 23589999999999999999998888999999999999999999999998666
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hccccc-------ccccEEEecccccc-------
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRVVY-------NNLGLLVVDEEQRF------- 417 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l~~-------~~l~lVIIDEaHr~------- 417 (835)
.+ |++|+++.+..+..++...+. +||++||+..+ .+.+.+ ++++++||||+|.+
T Consensus 149 ~l-Gl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArt 221 (913)
T PRK13103 149 FL-GLSVGIVTPFQPPEEKRAAYA------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEART 221 (913)
T ss_pred cc-CCEEEEECCCCCHHHHHHHhc------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCC
Confidence 55 899999999888888776663 89999999875 666666 88999999999952
Q ss_pred -----ch-----h-------hHHHH-------------------------------------------------------
Q 003268 418 -----GV-----K-------QKEKI------------------------------------------------------- 425 (835)
Q Consensus 418 -----g~-----~-------~~e~l------------------------------------------------------- 425 (835)
|. . ....+
T Consensus 222 PLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~ 301 (913)
T PRK13103 222 PLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSA 301 (913)
T ss_pred ceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccCh
Confidence 00 0 00000
Q ss_pred -------------Hh---hc------------------------------------------------------------
Q 003268 426 -------------AS---FK------------------------------------------------------------ 429 (835)
Q Consensus 426 -------------~~---~~------------------------------------------------------------ 429 (835)
+. +.
T Consensus 302 ~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfF 381 (913)
T PRK13103 302 HNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYF 381 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHH
Confidence 00 00
Q ss_pred -CCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC---CccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCc
Q 003268 430 -ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP---ERLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRI 502 (835)
Q Consensus 430 -~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~---~r~~V~~~~~~~~~---~~~~~~i~~~l~~ggqvlVf~~~v 502 (835)
...++-+||+|...... .+..+.+..++.+|+. .|......+..... ..+.+.+.+....|..|||-+.++
T Consensus 382 r~Y~kLsGMTGTa~te~~--Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SV 459 (913)
T PRK13103 382 RLYNKLSGMTGTADTEAF--EFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATI 459 (913)
T ss_pred HhcchhccCCCCCHHHHH--HHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCH
Confidence 01123334444422221 2222334445555432 22222222222212 234445555557889999999999
Q ss_pred cChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC-CeeEEEECCcCccCCCCC--------------------
Q 003268 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQ-------------------- 561 (835)
Q Consensus 503 ~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g-~~~VLVaT~iie~GIDIp-------------------- 561 (835)
+..|.+++.|... ++..-++++.-...+-+-+- ..| .-.|.|||++++||.||.
T Consensus 460 e~SE~ls~~L~~~--gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~ 534 (913)
T PRK13103 460 ETSEHMSNLLKKE--GIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQI 534 (913)
T ss_pred HHHHHHHHHHHHc--CCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHH
Confidence 9999999999988 66666677764433333332 334 356999999999999994
Q ss_pred -----------------CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 562 -----------------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 -----------------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+==+||-...+. |..--.|.+||+||.|.+|.+-+|++-++
T Consensus 535 ~~~~~~~~~~~e~V~e~GGLhVIgTerhe-SrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 535 AQIKADWQKRHQQVIEAGGLHVIASERHE-SRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHHhHHHHHHHcCCCEEEeeccCc-hHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 111455444443 55556799999999999999988887543
No 121
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.8e-17 Score=193.49 Aligned_cols=307 Identities=18% Similarity=0.208 Sum_probs=210.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.........|++.|.-+.-.++. ..|....||+|||+++.+|++.....|++|.|++|+-.||.|.++.+.
T Consensus 70 a~~R~lg~r~ydvQlig~l~Ll~---------G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~ 140 (764)
T PRK12326 70 AAERTLGLRPFDVQLLGALRLLA---------GDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMG 140 (764)
T ss_pred HHHHHcCCCcchHHHHHHHHHhC---------CCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHH
Confidence 34455677889999998776653 247899999999999999998888899999999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hccc-------ccccccEEEecccccc---
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF--- 417 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l-------~~~~l~lVIIDEaHr~--- 417 (835)
..|..+ |++|+++.+..+..++...+ .+||++||..-+ .+.+ ..+.+.++||||+|.+
T Consensus 141 ~ly~~L-GLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID 213 (764)
T PRK12326 141 PLYEAL-GLTVGWITEESTPEERRAAY------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD 213 (764)
T ss_pred HHHHhc-CCEEEEECCCCCHHHHHHHH------cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec
Confidence 866655 89999999988887776665 489999998644 2222 2356789999999931
Q ss_pred ------------------------------------------------chhhHHH-----------------------HH
Q 003268 418 ------------------------------------------------GVKQKEK-----------------------IA 426 (835)
Q Consensus 418 ------------------------------------------------g~~~~e~-----------------------l~ 426 (835)
|....+. +.
T Consensus 214 eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~ 293 (764)
T PRK12326 214 EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALH 293 (764)
T ss_pred cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHH
Confidence 0000000 00
Q ss_pred h---h-------------------------------------------------------------cCCceEEEeecCCC
Q 003268 427 S---F-------------------------------------------------------------KISVDVLTLSATPI 442 (835)
Q Consensus 427 ~---~-------------------------------------------------------------~~~~~vL~lSATp~ 442 (835)
. + +...++-+||+|..
T Consensus 294 A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~ 373 (764)
T PRK12326 294 AHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAV 373 (764)
T ss_pred HHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCCh
Confidence 0 0 00123455666653
Q ss_pred hhhHHHHHhcCCCcceeeCCCCC---ccceeEEecccC---HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC
Q 003268 443 PRTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFS---KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF 516 (835)
Q Consensus 443 p~tl~~~~~~~~d~s~i~~~p~~---r~~V~~~~~~~~---~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~ 516 (835)
..... +..+.+..++.+|+.. |......+.... -..+.+.+.+....|..|||.+.+++..+.+++.|.+.
T Consensus 374 t~~~E--f~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~- 450 (764)
T PRK12326 374 AAGEQ--LRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA- 450 (764)
T ss_pred hHHHH--HHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 33222 2233344555554332 221111121111 12345555555678899999999999999999999998
Q ss_pred CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc---------------CEEEEecCCCCCHhHHHH
Q 003268 517 PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA---------------NTIIVQDVQQFGLAQLYQ 581 (835)
Q Consensus 517 p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v---------------~~VIi~d~p~~sl~~l~Q 581 (835)
++...++++.-...+-+.+-+.=+ .-.|.|||++++||.||.-- =+||....+. |..--.|
T Consensus 451 -gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerhe-SrRID~Q 526 (764)
T PRK12326 451 -GVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHR-SERLDNQ 526 (764)
T ss_pred -CCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCc-hHHHHHH
Confidence 788888888754333222222222 34589999999999999721 2566555554 5666789
Q ss_pred HhcccCCCCCceEEEEEecCC
Q 003268 582 LRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 582 r~GRaGR~g~~G~ay~l~~~~ 602 (835)
.+||+||.|.+|.+-+|++-+
T Consensus 527 LrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 527 LRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred HhcccccCCCCCceeEEEEcc
Confidence 999999999999998888744
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=1.4e-18 Score=202.28 Aligned_cols=291 Identities=20% Similarity=0.238 Sum_probs=194.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
..++++|..||..+.+.+..+ . ...|+++.||+|||-+|+..+...+..+ ++||+|+-+++|..|.+..|.. |-.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g-~-~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~-~~P 240 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKG-Q-NRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFED-FLP 240 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcC-C-ceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHH-hCC
Confidence 478999999999999988543 3 3499999999999999887777666554 8999999999999999999876 444
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc----------ccccccccEEEeccccccchhhHHHHHh
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----------RVVYNNLGLLVVDEEQRFGVKQKEKIAS 427 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----------~l~~~~l~lVIIDEaHr~g~~~~e~l~~ 427 (835)
+ +-.+..+.+... .+.++|.++|...+.. .+....++|||||||||-.+...+.+..
T Consensus 241 ~-~~~~n~i~~~~~------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~d 307 (875)
T COG4096 241 F-GTKMNKIEDKKG------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILD 307 (875)
T ss_pred C-ccceeeeecccC------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHH
Confidence 3 334444443211 1247999999987753 1234568999999999976665555555
Q ss_pred hcCCceEEEeecCCCh----hhHHHH----------HhcCCC-----cceeeCC----CCCccc-------------e--
Q 003268 428 FKISVDVLTLSATPIP----RTLYLA----------LTGFRD-----ASLISTP----PPERLP-------------I-- 469 (835)
Q Consensus 428 ~~~~~~vL~lSATp~p----~tl~~~----------~~~~~d-----~s~i~~~----p~~r~~-------------V-- 469 (835)
+.....+ ++||||.. ++...+ ..+..| ..++.++ -.+..+ +
T Consensus 308 YFdA~~~-gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~ 386 (875)
T COG4096 308 YFDAATQ-GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE 386 (875)
T ss_pred HHHHHHH-hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc
Confidence 5443333 45999854 222111 000111 1111110 000000 0
Q ss_pred -----------eEEecccCHHHHHHHHHHHHhc------CCeEEEEecCccChHHHHHHHHhhCCCCc---EEEEcCCCC
Q 003268 470 -----------KTHLSAFSKEKVISAIKYELDR------GGQVFYVLPRIKGLEEPMDFLQQAFPGVD---IAIAHGQQY 529 (835)
Q Consensus 470 -----------~~~~~~~~~~~~~~~i~~~l~~------ggqvlVf~~~v~~ie~l~~~L~~~~p~~~---V~~lHG~m~ 529 (835)
.+.+.....+.+...+...+.+ -+++||||.+..+++.+.+.|...+|+.+ +..+.|+-.
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 0001111223344445555555 36899999999999999999999998654 666777754
Q ss_pred HHHHHHHHHHhhc--CCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC
Q 003268 530 SRQLEETMEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590 (835)
Q Consensus 530 ~~ere~vl~~F~~--g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g 590 (835)
.. +..+..|.. ...+|.|+.+++.+|||+|.|..+|.+..-+ |..-|.|++||.-|.-
T Consensus 467 ~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr-SktkF~QMvGRGTRl~ 526 (875)
T COG4096 467 QA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR-SKTKFKQMVGRGTRLC 526 (875)
T ss_pred hh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh-hHHHHHHHhcCccccC
Confidence 32 334455544 4577999999999999999988877665554 8899999999999963
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=8.8e-18 Score=200.85 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC
Q 003268 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 482 ~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp 561 (835)
.+.+......+.+|||||++++.++.+++.|... ++.+.++|+ .+.+|+..+..|..+...|+|||++++||+||+
T Consensus 588 i~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~--gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIk 663 (1025)
T PRK12900 588 VLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK--RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIK 663 (1025)
T ss_pred HHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc--CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcC
Confidence 3334334456889999999999999999999998 889999997 578999999999999999999999999999999
Q ss_pred ---CcCEE-----EEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 562 ---NANTI-----IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 562 ---~v~~V-----Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.|..+ |....|. +...+.|++||+||.|.+|.+.+|++.++.
T Consensus 664 l~~~V~~vGGL~VIgterhe-s~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 664 LGEGVRELGGLFILGSERHE-SRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CccchhhhCCceeeCCCCCc-hHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 45433 5555554 677899999999999999999999987643
No 124
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.78 E-value=6.4e-17 Score=199.61 Aligned_cols=316 Identities=18% Similarity=0.215 Sum_probs=199.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHH-HHHhhc
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV-VSERFS 356 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~-~~~~f~ 356 (835)
..|+++|.|.+.++.|.+.+.+ +.++++.||||+|||.+|++|++.....+++++|.+||++|..|+... +. .+.
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~---~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~~~~~-~l~ 317 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTH---SEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLEKDIP-LLN 317 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhcc---CCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHHH-HHH
Confidence 5689999999999988887743 578999999999999999999887655788999999999999999763 33 233
Q ss_pred CCC--CcEEEEecCCCCHH----------------HH----------------------------HHHHHhHh-------
Q 003268 357 KYP--DIKVGLLSRFQSKA----------------EK----------------------------EEHLDMIK------- 383 (835)
Q Consensus 357 ~~~--gi~V~~l~g~~s~~----------------e~----------------------------~~~l~~l~------- 383 (835)
... .++++++.|..+.- +. ...|..+.
T Consensus 318 ~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~ 397 (850)
T TIGR01407 318 EILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSK 397 (850)
T ss_pred HHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCC
Confidence 221 26777666544220 00 00011111
Q ss_pred ----------------cCCcceEecchHhhhccc-----ccccccEEEeccccccc--------hh-------h----H-
Q 003268 384 ----------------HGHLNIIVGTHSLLGSRV-----VYNNLGLLVVDEEQRFG--------VK-------Q----K- 422 (835)
Q Consensus 384 ----------------~g~~dIIIgT~~~L~~~l-----~~~~l~lVIIDEaHr~g--------~~-------~----~- 422 (835)
...+||||++|..|..++ .+.+..++||||||++. .. . .
T Consensus 398 ~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l~ 477 (850)
T TIGR01407 398 KDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLIG 477 (850)
T ss_pred CCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHHH
Confidence 124689999999887543 24566899999999631 00 0 0
Q ss_pred ---------------------------------------------------------HHH----Hh--------------
Q 003268 423 ---------------------------------------------------------EKI----AS-------------- 427 (835)
Q Consensus 423 ---------------------------------------------------------e~l----~~-------------- 427 (835)
..+ ..
T Consensus 478 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 557 (850)
T TIGR01407 478 KGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLKE 557 (850)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000 00
Q ss_pred -------h---------------------------cCCceEEEeecCCCh---hhHHHHHhcCCCcceeeC-CCCCc--c
Q 003268 428 -------F---------------------------KISVDVLTLSATPIP---RTLYLALTGFRDASLIST-PPPER--L 467 (835)
Q Consensus 428 -------~---------------------------~~~~~vL~lSATp~p---~tl~~~~~~~~d~s~i~~-~p~~r--~ 467 (835)
. .....+|++|||..+ ........|+.+...... +.+-. .
T Consensus 558 ~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~ 637 (850)
T TIGR01407 558 GHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAE 637 (850)
T ss_pred CCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHH
Confidence 0 012457889999863 333334456544332222 11111 1
Q ss_pred ceeEEe----c---ccCHH----HHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEcCCCCHHHH
Q 003268 468 PIKTHL----S---AFSKE----KVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQL 533 (835)
Q Consensus 468 ~V~~~~----~---~~~~~----~~~~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~L~~~~--p~~~V~~lHG~m~~~er 533 (835)
....++ . ..+.+ .+.+.|.+.+. .+|+++||+++.+.++.++..|.... .++.+ +..+.. ..|
T Consensus 638 ~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r 714 (850)
T TIGR01407 638 NQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSR 714 (850)
T ss_pred cCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccH
Confidence 111111 1 01222 33444444443 45899999999999999999997632 23333 333333 478
Q ss_pred HHHHHHhhcCCeeEEEECCcCccCCCCCCcC--EEEEecCCCCC-----------------------------HhHHHHH
Q 003268 534 EETMEKFAQGAIKILICTNIVESGLDIQNAN--TIIVQDVQQFG-----------------------------LAQLYQL 582 (835)
Q Consensus 534 e~vl~~F~~g~~~VLVaT~iie~GIDIp~v~--~VIi~d~p~~s-----------------------------l~~l~Qr 582 (835)
.++++.|++++..||+||+.+.+|||+|+.. .||+...|--+ +..+.|.
T Consensus 715 ~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa 794 (850)
T TIGR01407 715 AKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQA 794 (850)
T ss_pred HHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHh
Confidence 8999999999999999999999999999766 56666655111 1235699
Q ss_pred hcccCCCCCc-eEEEEEecC
Q 003268 583 RGRVGRADKE-AHAYLFYPD 601 (835)
Q Consensus 583 ~GRaGR~g~~-G~ay~l~~~ 601 (835)
+||.=|.... |. +++.+.
T Consensus 795 ~GRlIRs~~D~G~-v~ilD~ 813 (850)
T TIGR01407 795 LGRLIRRENDRGS-IVILDR 813 (850)
T ss_pred hccccccCCceEE-EEEEcc
Confidence 9999998643 44 344443
No 125
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=6.9e-17 Score=186.11 Aligned_cols=320 Identities=18% Similarity=0.208 Sum_probs=211.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH---HHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA---LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va---l~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
.|.|+|+.++.++.+--.+ . ..-|+..++|-|||.+. |.++...-.--+.+||+||.+. ..||..+|...+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q-~--~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Ti-i~qW~~E~~~w~-- 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQ-R--AGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATI-IHQWMKEFQTWW-- 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhc-c--CCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHH-HHHHHHHHHHhC--
Confidence 5678999999998864332 2 33589999999999873 3333322122378999999864 569999998743
Q ss_pred CCCcEEEEecCCCCH---------HHHHHHHHhHhcCCcceEecchHhhhc---ccccccccEEEeccccccchhh---H
Q 003268 358 YPDIKVGLLSRFQSK---------AEKEEHLDMIKHGHLNIIVGTHSLLGS---RVVYNNLGLLVVDEEQRFGVKQ---K 422 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~---------~e~~~~l~~l~~g~~dIIIgT~~~L~~---~l~~~~l~lVIIDEaHr~g~~~---~ 422 (835)
|.++|.++++..+. ..+...+.....-...|+|+|+..+.- .+.-..|+++|+||.|++-... .
T Consensus 279 -p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~is 357 (923)
T KOG0387|consen 279 -PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKIS 357 (923)
T ss_pred -cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHH
Confidence 45789888886552 111112222222235799999987753 3444678999999999984422 2
Q ss_pred HHHHhhcCCceEEEeecCCChhhHHHHHh--cCCCcceeeC---------------------------------------
Q 003268 423 EKIASFKISVDVLTLSATPIPRTLYLALT--GFRDASLIST--------------------------------------- 461 (835)
Q Consensus 423 e~l~~~~~~~~vL~lSATp~p~tl~~~~~--~~~d~s~i~~--------------------------------------- 461 (835)
..++++ ...+.+.||+||+.+.+...+. .|..+..+-+
T Consensus 358 lackki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 334444 4456678999998654432221 0000000000
Q ss_pred ----------------CCC-Ccccee----------------------------------------------------EE
Q 003268 462 ----------------PPP-ERLPIK----------------------------------------------------TH 472 (835)
Q Consensus 462 ----------------~p~-~r~~V~----------------------------------------------------~~ 472 (835)
.|. ....+- ..
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 000 000000 00
Q ss_pred e--ccc--C------HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhc
Q 003268 473 L--SAF--S------KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ 542 (835)
Q Consensus 473 ~--~~~--~------~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~ 542 (835)
. ..+ + -..+...+......|..|++|..++..++.+...|.. .+++..+.+.|..+...|...+++|.+
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcC
Confidence 0 000 0 0122333334445667788888887777777777774 348999999999999999999999997
Q ss_pred CC-e-eEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCC--ceEEEEEecCCCcCCHHHH
Q 003268 543 GA-I-KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK--EAHAYLFYPDKSLLSDQAL 610 (835)
Q Consensus 543 g~-~-~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~~~~~~~a~ 610 (835)
++ + -+|++|.+.+-|+|+..+|.||+||++ |+++.-.|.+-||.|.|+ .-.+|.|.+..++......
T Consensus 596 ~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPd-WNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~ 666 (923)
T KOG0387|consen 596 DESIFVFLLTTRVGGLGLNLTGANRVIIFDPD-WNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYH 666 (923)
T ss_pred CCceEEEEEEecccccccccccCceEEEECCC-CCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHH
Confidence 75 3 368899999999999999999999998 899999999999999994 4677999998876544333
No 126
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=4.2e-17 Score=179.27 Aligned_cols=335 Identities=19% Similarity=0.183 Sum_probs=217.7
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHhCC-CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 250 LMELYLHRLKQKRPPYPKNPAIAEFAAQFP-YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 250 l~~l~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
+++.|.-|-....+.++.+ .-| -.++|+|..++..+. +..+.+.-+|+-|.|+|||++.+.++...
T Consensus 278 lLeEYDFRND~~npdl~id--------LKPst~iRpYQEksL~KMF----GNgRARSGiIVLPCGAGKtLVGvTAa~ti- 344 (776)
T KOG1123|consen 278 LLEEYDFRNDNVNPDLDID--------LKPSTQIRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKTLVGVTAACTI- 344 (776)
T ss_pred hhhhhccccCCCCCCCCcC--------cCcccccCchHHHHHHHHh----CCCcccCceEEEecCCCCceeeeeeeeee-
Confidence 6666765544333333321 112 378999999988765 45566788999999999999988776544
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc---------
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS--------- 399 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~--------- 399 (835)
.+.+|||+..-+-+.||...|+. |.....-.++.+++... + . ..+.+.|+|+|++++..
T Consensus 345 --kK~clvLcts~VSVeQWkqQfk~-wsti~d~~i~rFTsd~K--e------~-~~~~~gvvvsTYsMva~t~kRS~eae 412 (776)
T KOG1123|consen 345 --KKSCLVLCTSAVSVEQWKQQFKQ-WSTIQDDQICRFTSDAK--E------R-FPSGAGVVVTTYSMVAYTGKRSHEAE 412 (776)
T ss_pred --cccEEEEecCccCHHHHHHHHHh-hcccCccceEEeecccc--c------c-CCCCCcEEEEeeehhhhcccccHHHH
Confidence 67899999999999999999986 66554455666655321 1 1 12448899999988842
Q ss_pred ----ccccccccEEEeccccccchhhHHHHHhhcCCceEEEeecCCChhhHHH--------------HHhcCCCcceeeC
Q 003268 400 ----RVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYL--------------ALTGFRDASLIST 461 (835)
Q Consensus 400 ----~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~--------------~~~~~~d~s~i~~ 461 (835)
-+.-..||++|+||+|-........+...-.....|++|||...+.... .+..+.....|..
T Consensus 413 k~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~ 492 (776)
T KOG1123|consen 413 KIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAK 492 (776)
T ss_pred HHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeE
Confidence 1223689999999999876665555444434445679999963221100 0000000000100
Q ss_pred --------C-----------CCCccceeEEecccCHHHHHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcE
Q 003268 462 --------P-----------PPERLPIKTHLSAFSKEKVISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 521 (835)
Q Consensus 462 --------~-----------p~~r~~V~~~~~~~~~~~~~~~i~~~l-~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V 521 (835)
+ ...+...-.++...++-...+.+.+.. .+|.+++||..++-.....+-.|.+
T Consensus 493 VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K------- 565 (776)
T KOG1123|consen 493 VQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK------- 565 (776)
T ss_pred EeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-------
Confidence 0 001111222222222223333333322 4677888888776554444433322
Q ss_pred EEEcCCCCHHHHHHHHHHhhcC-CeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCC------ceE
Q 003268 522 AIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK------EAH 594 (835)
Q Consensus 522 ~~lHG~m~~~ere~vl~~F~~g-~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~------~G~ 594 (835)
-+++|..++.+|.++++.|.-+ .++-++-..+..+.||+|.+|++|.....-=|-.|--||.||.-|+.+ .++
T Consensus 566 pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnaf 645 (776)
T KOG1123|consen 566 PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAF 645 (776)
T ss_pred ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCcccccee
Confidence 3689999999999999999854 678888889999999999999999988764356778899999998742 366
Q ss_pred EEEEecCCCcCCHHHHHHHHHH
Q 003268 595 AYLFYPDKSLLSDQALERLAAL 616 (835)
Q Consensus 595 ay~l~~~~~~~~~~a~~rl~~i 616 (835)
.|.+++.++...-+..+|-.-+
T Consensus 646 FYSLVS~DTqEM~YStKRQ~FL 667 (776)
T KOG1123|consen 646 FYSLVSKDTQEMYYSTKRQQFL 667 (776)
T ss_pred eeeeeecchHHHHhhhhhhhhh
Confidence 7778888876666666664433
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.71 E-value=3.6e-15 Score=182.36 Aligned_cols=310 Identities=19% Similarity=0.220 Sum_probs=195.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHH-HHHHHhhcC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF-DVVSERFSK 357 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~-~~~~~~f~~ 357 (835)
.|+++|.|.+....|.+.+.+ +..+++.++||+|||.+|++|++... .+.+++|++||++|++|+. +.+. .++.
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~---~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHD---GPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhC---CCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 489999999988888887743 46799999999999999999987643 5789999999999999995 4444 3555
Q ss_pred CCCcEEEEecCCCCHHH--------------------------------------------HHHHHHhHh----------
Q 003268 358 YPDIKVGLLSRFQSKAE--------------------------------------------KEEHLDMIK---------- 383 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e--------------------------------------------~~~~l~~l~---------- 383 (835)
..++++..+.|..+.-- ....|..+.
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 44677666554432100 000112111
Q ss_pred -------------cCCcceEecchHhhhccc----ccccccEEEeccccccc-------hhh------HH----------
Q 003268 384 -------------HGHLNIIVGTHSLLGSRV----VYNNLGLLVVDEEQRFG-------VKQ------KE---------- 423 (835)
Q Consensus 384 -------------~g~~dIIIgT~~~L~~~l----~~~~l~lVIIDEaHr~g-------~~~------~e---------- 423 (835)
...+||||++|++|..++ .+..++++||||||++- ... ..
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 477 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPL 477 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHH
Confidence 124699999999887543 35678999999999741 000 00
Q ss_pred -------------------------------------------HHH--------------h----h--------------
Q 003268 424 -------------------------------------------KIA--------------S----F-------------- 428 (835)
Q Consensus 424 -------------------------------------------~l~--------------~----~-------------- 428 (835)
.+. . +
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~ 557 (820)
T PRK07246 478 PLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLN 557 (820)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEE
Confidence 000 0 0
Q ss_pred -------------cCCceEEEeecCCC--hhhHHHHHhcCCCcceeeCCCCCccceeEE----ecc---cCH----HHHH
Q 003268 429 -------------KISVDVLTLSATPI--PRTLYLALTGFRDASLISTPPPERLPIKTH----LSA---FSK----EKVI 482 (835)
Q Consensus 429 -------------~~~~~vL~lSATp~--p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~----~~~---~~~----~~~~ 482 (835)
.....+|++|||.. +........|+........+.........+ +.. .+. +.+.
T Consensus 558 ~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~ 637 (820)
T PRK07246 558 SASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIA 637 (820)
T ss_pred eeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHH
Confidence 01135678888874 222222334443322222211110000011 110 111 2344
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC-
Q 003268 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ- 561 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp- 561 (835)
+.|......+|+++|++++.+.++.+++.|... ...+ ...|.-. .+.+++++|++++..||++|..+.+|||+|
T Consensus 638 ~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 638 KRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred HHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 555555566799999999999999999998764 3444 4445322 246689999998889999999999999997
Q ss_pred -CcCEEEEecCCCC---C--------------------------HhHHHHHhcccCCCCC-ceEEEEE
Q 003268 562 -NANTIIVQDVQQF---G--------------------------LAQLYQLRGRVGRADK-EAHAYLF 598 (835)
Q Consensus 562 -~v~~VIi~d~p~~---s--------------------------l~~l~Qr~GRaGR~g~-~G~ay~l 598 (835)
....||+...|-- + .-.+.|-+||.=|... .|.++++
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 3556677665510 1 1235699999999864 5654443
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.71 E-value=2.1e-15 Score=178.03 Aligned_cols=320 Identities=17% Similarity=0.203 Sum_probs=195.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCC---CCCcEEEEccCCCccHHHHHHHHHHHHhC--C-----CEEEEEcccHHHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVVSA--G-----KQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~---~~~d~LI~g~TGsGKT~val~a~~~~~~~--g-----~qvlVLvPtr~La~Q~~~~ 350 (835)
.++|+|++.+..+.+.+.... ....+|+.-..|+|||+..+..+...+.. + .+.+|++|. .|+..|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 789999999999998886531 44578999999999999866555544433 4 568999997 578889999
Q ss_pred HHHhhcCCCCcEEEEecCCCCH-H-HHHHHHHh-HhcCCcceEecchHhhh---cccccccccEEEeccccccch---hh
Q 003268 351 VSERFSKYPDIKVGLLSRFQSK-A-EKEEHLDM-IKHGHLNIIVGTHSLLG---SRVVYNNLGLLVVDEEQRFGV---KQ 421 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~-~-e~~~~l~~-l~~g~~dIIIgT~~~L~---~~l~~~~l~lVIIDEaHr~g~---~~ 421 (835)
|.++.... .+....+.+..+. . ....++.. -+.-..-|.+-+.+.++ +.+....+|+||+||.|+.-. ..
T Consensus 317 F~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 317 FGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 98865532 3555555554432 0 00111100 01112346666666664 345668899999999999743 33
Q ss_pred HHHHHhhcCCceEEEeecCCChhhHH--HHHhcCCCcceeeCCCC----------C------------------------
Q 003268 422 KEKIASFKISVDVLTLSATPIPRTLY--LALTGFRDASLISTPPP----------E------------------------ 465 (835)
Q Consensus 422 ~e~l~~~~~~~~vL~lSATp~p~tl~--~~~~~~~d~s~i~~~p~----------~------------------------ 465 (835)
...|.++... +.|++|+||+.+.+. +.+..+-.+.++.+... .
T Consensus 396 ~kaL~~l~t~-rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t 474 (776)
T KOG0390|consen 396 LKALSSLKTP-RRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELT 474 (776)
T ss_pred HHHHHhcCCC-ceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHH
Confidence 4556666554 456799999865432 22222222222111000 0
Q ss_pred --------------ccceeE-EecccC----HHHHHHHHHHH----------------Hh--cCCeEEE-----------
Q 003268 466 --------------RLPIKT-HLSAFS----KEKVISAIKYE----------------LD--RGGQVFY----------- 497 (835)
Q Consensus 466 --------------r~~V~~-~~~~~~----~~~~~~~i~~~----------------l~--~ggqvlV----------- 497 (835)
-.|... ++...+ ...+...+... +. .....++
T Consensus 475 ~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~ 554 (776)
T KOG0390|consen 475 NKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKA 554 (776)
T ss_pred HhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccccccc
Confidence 000000 000000 00011111110 00 0000111
Q ss_pred ------------------------------------------EecCcc---ChHHHHHHHHhhCCCCcEEEEcCCCCHHH
Q 003268 498 ------------------------------------------VLPRIK---GLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 532 (835)
Q Consensus 498 ------------------------------------------f~~~v~---~ie~l~~~L~~~~p~~~V~~lHG~m~~~e 532 (835)
|+--+. .+.++.+.+...- |+.+..+||+|+..+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~q 633 (776)
T KOG0390|consen 555 FKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQ 633 (776)
T ss_pred ccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHH
Confidence 111111 1122222222222 789999999999999
Q ss_pred HHHHHHHhhcCC---eeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCC--ceEEEEEecCCCcC
Q 003268 533 LEETMEKFAQGA---IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK--EAHAYLFYPDKSLL 605 (835)
Q Consensus 533 re~vl~~F~~g~---~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~~~~ 605 (835)
|+.+++.|.+.. .-+|.+|.+.+.||++-+++.||++|++ |+++.-.|.++||-|.|+ .-|+|.|++.....
T Consensus 634 Rq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~d-WNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 634 RQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPD-WNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred HHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCC-CCchhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 999999999754 4468899999999999999999999998 899999999999999995 46677888877653
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.68 E-value=8.5e-15 Score=174.34 Aligned_cols=268 Identities=17% Similarity=0.146 Sum_probs=177.8
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.........|++.|.-+.-.+. ...|..+.||.|||+++.+|++-....|+.|-|++++..||.+-++.+.
T Consensus 68 a~~R~lG~r~ydvQlig~l~L~---------~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~ 138 (870)
T CHL00122 68 ASFRTLGLRHFDVQLIGGLVLN---------DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMG 138 (870)
T ss_pred HHHHHhCCCCCchHhhhhHhhc---------CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHH
Confidence 3344566778899988753331 3469999999999999998887666679999999999999999999998
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hccc-------ccccccEEEecccccc---
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF--- 417 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l-------~~~~l~lVIIDEaHr~--- 417 (835)
..|.- .|++|+++.+..+..++...+ .+||++||..-+ .+.+ ..+.+.++||||+|.+
T Consensus 139 pvy~~-LGLsvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLID 211 (870)
T CHL00122 139 QIYRF-LGLTVGLIQEGMSSEERKKNY------LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILID 211 (870)
T ss_pred HHHHH-cCCceeeeCCCCChHHHHHhc------CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheec
Confidence 75554 489999999988887776655 389999998633 3332 2356889999999931
Q ss_pred -------------------------------------------------chhhHHHH---------------------Hh
Q 003268 418 -------------------------------------------------GVKQKEKI---------------------AS 427 (835)
Q Consensus 418 -------------------------------------------------g~~~~e~l---------------------~~ 427 (835)
|....+.+ ..
T Consensus 212 eArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A 291 (870)
T CHL00122 212 EARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKA 291 (870)
T ss_pred cCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHH
Confidence 00000110 00
Q ss_pred h----------------------------------------------------------------cCCceEEEeecCCCh
Q 003268 428 F----------------------------------------------------------------KISVDVLTLSATPIP 443 (835)
Q Consensus 428 ~----------------------------------------------------------------~~~~~vL~lSATp~p 443 (835)
. +...++.+||+|...
T Consensus 292 ~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~t 371 (870)
T CHL00122 292 KELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKT 371 (870)
T ss_pred HHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHH
Confidence 0 001244566666532
Q ss_pred hhHHHHHhcCCCcceeeCCCCC---ccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC
Q 003268 444 RTLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP 517 (835)
Q Consensus 444 ~tl~~~~~~~~d~s~i~~~p~~---r~~V~~~~~~~~~---~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p 517 (835)
....+....+..++.+|+.. |......+..... ..+.+.+.+....|..|||.+.+++..|.+++.|.+.
T Consensus 372 --e~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~-- 447 (870)
T CHL00122 372 --EELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY-- 447 (870)
T ss_pred --HHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc--
Confidence 22223334455566655332 2222222222211 2345555666678899999999999999999999998
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhhcC-CeeEEEECCcCccCCCCC
Q 003268 518 GVDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQ 561 (835)
Q Consensus 518 ~~~V~~lHG~m~~~ere~vl~~F~~g-~~~VLVaT~iie~GIDIp 561 (835)
++..-++++.-...+++.-+-.- .| .-.|.|||++++||.||.
T Consensus 448 gi~h~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 448 RLPHQLLNAKPENVRRESEIVAQ-AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CCccceeeCCCccchhHHHHHHh-cCCCCcEEEeccccCCCcCee
Confidence 78888888873222233222222 33 356999999999999985
No 130
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.67 E-value=1.5e-15 Score=152.00 Aligned_cols=174 Identities=27% Similarity=0.249 Sum_probs=125.6
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHh
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
.+++.++|+|.+++..+.... ..++++|+||+|||.+++.+++..+..+ ..++|++|+..++.|+..++...
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 346789999999999886411 6799999999999999988888877665 78999999999999999999875
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEeccccccch-hhH---H-H
Q 003268 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGV-KQK---E-K 424 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~g~-~~~---e-~ 424 (835)
+..........+.+... ...+..+..+..+|+++|++.+.+. .....++++|+||+|.+.. ... . .
T Consensus 78 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 78 GPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred hccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 54332244555555432 2234445556559999999877643 2445788999999999864 222 2 2
Q ss_pred HHhhcCCceEEEeecCCChhhHHHHHhcCCCcceee
Q 003268 425 IASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 460 (835)
Q Consensus 425 l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~ 460 (835)
+.......+++++||||..........+..+...+.
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 233346889999999998766666665555444433
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=7.9e-15 Score=173.68 Aligned_cols=305 Identities=18% Similarity=0.231 Sum_probs=203.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 274 ~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
........|++.|.-.--.+. + ..|....||-|||+++.+|++.....|+.|-|+...--||.--++.+..
T Consensus 71 ~~R~lG~r~ydVQliGglvLh----~-----G~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~ 141 (925)
T PRK12903 71 TKRVLGKRPYDVQIIGGIILD----L-----GSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGK 141 (925)
T ss_pred HHHHhCCCcCchHHHHHHHHh----c-----CCeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHH
Confidence 344567788899988754432 1 2489999999999999999887777899999999999999988888877
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hccc-------ccccccEEEecccccc----
Q 003268 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF---- 417 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l-------~~~~l~lVIIDEaHr~---- 417 (835)
.|. +.|++|++.....+..++...+ .+||++||..-| .+.+ ..+.+.+.||||+|.+
T Consensus 142 vy~-fLGLsvG~i~~~~~~~~rr~aY------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDE 214 (925)
T PRK12903 142 VFN-FLGLSVGINKANMDPNLKREAY------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDE 214 (925)
T ss_pred HHH-HhCCceeeeCCCCChHHHHHhc------cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecc
Confidence 554 4499999999887777766555 389999998644 3332 2367889999999931
Q ss_pred -----------------------------------------------chhhHHHHH----------------------h-
Q 003268 418 -----------------------------------------------GVKQKEKIA----------------------S- 427 (835)
Q Consensus 418 -----------------------------------------------g~~~~e~l~----------------------~- 427 (835)
|....+.+. .
T Consensus 215 ArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~ 294 (925)
T PRK12903 215 AKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAH 294 (925)
T ss_pred cCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHH
Confidence 000001100 0
Q ss_pred --h-------------------------------------------------------------cCCceEEEeecCCChh
Q 003268 428 --F-------------------------------------------------------------KISVDVLTLSATPIPR 444 (835)
Q Consensus 428 --~-------------------------------------------------------------~~~~~vL~lSATp~p~ 444 (835)
+ +-..++-+||+|....
T Consensus 295 ~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te 374 (925)
T PRK12903 295 KVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTE 374 (925)
T ss_pred HHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 0 0012334455554222
Q ss_pred hHHHHHhcCCCcceeeCCCCC---ccceeEEecccCH---HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC
Q 003268 445 TLYLALTGFRDASLISTPPPE---RLPIKTHLSAFSK---EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG 518 (835)
Q Consensus 445 tl~~~~~~~~d~s~i~~~p~~---r~~V~~~~~~~~~---~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~ 518 (835)
.. .+....+..++.+|+.. |......+..... ..+.+.+.+....|..|||.|.+++..+.+++.|.+. +
T Consensus 375 ~~--Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~--g 450 (925)
T PRK12903 375 EQ--EFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA--N 450 (925)
T ss_pred HH--HHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC--C
Confidence 21 22233445555554322 2111111111111 2344555555577889999999999999999999998 7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcC-CeeEEEECCcCccCCCCCCcC--------EEEEecCCCCCHhHHHHHhcccCCC
Q 003268 519 VDIAIAHGQQYSRQLEETMEKFAQG-AIKILICTNIVESGLDIQNAN--------TIIVQDVQQFGLAQLYQLRGRVGRA 589 (835)
Q Consensus 519 ~~V~~lHG~m~~~ere~vl~~F~~g-~~~VLVaT~iie~GIDIp~v~--------~VIi~d~p~~sl~~l~Qr~GRaGR~ 589 (835)
+...++++.-. +++.-+-. ..| .-.|.|||++++||.||.--. +||....+. |..--.|.+||+||.
T Consensus 451 i~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe-SrRIDnQLrGRaGRQ 526 (925)
T PRK12903 451 IPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE-SRRIDNQLRGRSGRQ 526 (925)
T ss_pred CCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc-hHHHHHHHhcccccC
Confidence 88888888643 33333322 344 456999999999999997322 677665554 555567999999999
Q ss_pred CCceEEEEEecCC
Q 003268 590 DKEAHAYLFYPDK 602 (835)
Q Consensus 590 g~~G~ay~l~~~~ 602 (835)
|.+|.+-+|++-+
T Consensus 527 GDpGss~f~lSLe 539 (925)
T PRK12903 527 GDVGESRFFISLD 539 (925)
T ss_pred CCCCcceEEEecc
Confidence 9999998887744
No 132
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.64 E-value=5.4e-16 Score=155.05 Aligned_cols=154 Identities=23% Similarity=0.338 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~ 359 (835)
|+|+|+|.+|+..+.+.+.........++.+|||||||.+++..+..... ++++++|+..|+.|+.+.|.. +...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~-~~~~- 76 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDD-FGSE- 76 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHH-HSTT-
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHH-hhhh-
Confidence 57899999999999987743213578999999999999999876666544 999999999999999999965 3321
Q ss_pred CcEEEEe-----------cCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc----------------ccccccEEEec
Q 003268 360 DIKVGLL-----------SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV----------------VYNNLGLLVVD 412 (835)
Q Consensus 360 gi~V~~l-----------~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l----------------~~~~l~lVIID 412 (835)
...+... ........ ..........++++.|...+.... .....++||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDIS---DKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEE---HHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhcccccccccccccccccccccc---cccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 1111110 00001111 111223446789999988775432 12467899999
Q ss_pred cccccchhh-HHHHHhhcCCceEEEeecCCC
Q 003268 413 EEQRFGVKQ-KEKIASFKISVDVLTLSATPI 442 (835)
Q Consensus 413 EaHr~g~~~-~e~l~~~~~~~~vL~lSATp~ 442 (835)
|+|++.... .+.+.. .....+|.|||||.
T Consensus 154 EaH~~~~~~~~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSSYREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHHHHHHHH-SSCCEEEEEESS-S
T ss_pred hhhhcCCHHHHHHHHc-CCCCeEEEEEeCcc
Confidence 999997766 555544 56778999999984
No 133
>COG4889 Predicted helicase [General function prediction only]
Probab=99.64 E-value=3.1e-15 Score=172.65 Aligned_cols=322 Identities=20% Similarity=0.270 Sum_probs=190.2
Q ss_pred ChHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHH
Q 003268 268 NPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 268 ~~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~ 347 (835)
.+++.++.-.-|+.|+|+|+.||+..++++....+|+ +.+.+|+|||..+|..+.... ..++|+|||...|..|.
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGk---LIMAcGTGKTfTsLkisEala--~~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGK---LIMACGTGKTFTSLKISEALA--AARILFLVPSISLLSQT 222 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCc---EEEecCCCccchHHHHHHHHh--hhheEeecchHHHHHHH
Confidence 3466667677789999999999999999997766665 334459999999877655432 27899999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHH-----------------HHHHHHHhH----hcCCcceEecchHhhhc-----cc
Q 003268 348 FDVVSERFSKYPDIKVGLLSRFQSKA-----------------EKEEHLDMI----KHGHLNIIVGTHSLLGS-----RV 401 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~-----------------e~~~~l~~l----~~g~~dIIIgT~~~L~~-----~l 401 (835)
.+++... ... .++...+++..... ..+.++..+ +....-||++|++.+-. ..
T Consensus 223 lrew~~~-~~l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~ 300 (1518)
T COG4889 223 LREWTAQ-KEL-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEA 300 (1518)
T ss_pred HHHHhhc-cCc-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHc
Confidence 9988753 222 35544444432110 011111111 12236788899876632 34
Q ss_pred ccccccEEEecccccc-chhh----HHHHHhh-----cCCceEEEeecCCChhhHH---HHH------hcCCCcc-----
Q 003268 402 VYNNLGLLVVDEEQRF-GVKQ----KEKIASF-----KISVDVLTLSATPIPRTLY---LAL------TGFRDAS----- 457 (835)
Q Consensus 402 ~~~~l~lVIIDEaHr~-g~~~----~e~l~~~-----~~~~~vL~lSATp~p~tl~---~~~------~~~~d~s----- 457 (835)
-+..+++||+|||||- |... .....+. -+..+.+.|||||-.-+.. .+. ..+.|..
T Consensus 301 G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGee 380 (1518)
T COG4889 301 GLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEE 380 (1518)
T ss_pred CCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchh
Confidence 5788999999999984 2210 1111000 1234567899998421110 000 0000000
Q ss_pred eeeCCCCC------ccceeEEecccCHH-----------------------HHHHHHHHHHhcCC---------------
Q 003268 458 LISTPPPE------RLPIKTHLSAFSKE-----------------------KVISAIKYELDRGG--------------- 493 (835)
Q Consensus 458 ~i~~~p~~------r~~V~~~~~~~~~~-----------------------~~~~~i~~~l~~gg--------------- 493 (835)
+....-.+ -...+..+...++. .++....-...+.|
T Consensus 381 f~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~ 460 (1518)
T COG4889 381 FHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPM 460 (1518)
T ss_pred hhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHH
Confidence 00000000 00000111111111 11111111111111
Q ss_pred -eEEEEecCccChHHH-----------HHHHHhhCCCCcEEEEc--CCCCHHHHHHHHH---HhhcCCeeEEEECCcCcc
Q 003268 494 -QVFYVLPRIKGLEEP-----------MDFLQQAFPGVDIAIAH--GQQYSRQLEETME---KFAQGAIKILICTNIVES 556 (835)
Q Consensus 494 -qvlVf~~~v~~ie~l-----------~~~L~~~~p~~~V~~lH--G~m~~~ere~vl~---~F~~g~~~VLVaT~iie~ 556 (835)
+.+-||.++++...+ -..|.+.++++.+.+-| |.|+..+|+..+. .|...+++||---.++..
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 234566665543333 23455667777777766 8899888865553 456788999999999999
Q ss_pred CCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC---CceEEEE
Q 003268 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD---KEAHAYL 597 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g---~~G~ay~ 597 (835)
|||+|.++.||.+++.. ++-+.+|.+||+.|-. ..||.++
T Consensus 541 GVDVPaLDsViFf~pr~-smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 541 GVDVPALDSVIFFDPRS-SMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCCccccceEEEecCch-hHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999876 8999999999999964 3355544
No 134
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.63 E-value=3.7e-14 Score=163.73 Aligned_cols=312 Identities=17% Similarity=0.256 Sum_probs=213.1
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH--HHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va--l~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
+++-++|.-.++++.- |. ..+++.|+..+.|-|||.+. .++.++.......-||+||.-.|- .|.++|.. |+
T Consensus 398 i~LkdYQlvGvNWL~L-ly--k~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTle-NWlrEf~k-wC- 471 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLL-LY--KKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLE-NWLREFAK-WC- 471 (941)
T ss_pred CcccchhhhhHHHHHH-HH--HccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHH-HHHHHHHH-hC-
Confidence 4688999999998764 32 34688899999999999874 344445555556789999998765 46677765 54
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcC--CcceEecchHhhhcc------cccccccEEEeccccccch---hhHHHHH
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHG--HLNIIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGV---KQKEKIA 426 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g--~~dIIIgT~~~L~~~------l~~~~l~lVIIDEaHr~g~---~~~e~l~ 426 (835)
|.++|..++|. ..++.+....+..+ .+||+++|+.+.... +.-.+++++|.||.|.+-. .....|.
T Consensus 472 -Psl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 472 -PSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred -CceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 57999999995 46777777777765 799999999877421 2224678999999997633 2333444
Q ss_pred hhcCCceEEEeecCCChhhHHHHHh---c---------CCCcce------------------------------------
Q 003268 427 SFKISVDVLTLSATPIPRTLYLALT---G---------FRDASL------------------------------------ 458 (835)
Q Consensus 427 ~~~~~~~vL~lSATp~p~tl~~~~~---~---------~~d~s~------------------------------------ 458 (835)
..+.+ ..|++|+||....+...+. + ..+...
T Consensus 549 ~I~An-~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 549 SINAN-FRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred ccccc-ceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444 4567899985322110000 0 000000
Q ss_pred -----e-eCCCCC-----------------------------------cc--------------ce--eEEe--------
Q 003268 459 -----I-STPPPE-----------------------------------RL--------------PI--KTHL-------- 473 (835)
Q Consensus 459 -----i-~~~p~~-----------------------------------r~--------------~V--~~~~-------- 473 (835)
+ ..||.. .. |. ..++
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 0 000000 00 00 0000
Q ss_pred ----------cccCH-----------------------------------------HHHHHHHHHHHhcCCeEEEEecCc
Q 003268 474 ----------SAFSK-----------------------------------------EKVISAIKYELDRGGQVFYVLPRI 502 (835)
Q Consensus 474 ----------~~~~~-----------------------------------------~~~~~~i~~~l~~ggqvlVf~~~v 502 (835)
...+. ..+...+-.....|.+|++|..-.
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFT 787 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFT 787 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHH
Confidence 00000 011122222235578999998887
Q ss_pred cChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCC--eeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHH
Q 003268 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLY 580 (835)
Q Consensus 503 ~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~--~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~ 580 (835)
...+-+.-.|..+ ++....+.|...-..|+.++..|...+ .-+|++|-..+-|||+..+|+||++|.+ |++-.-.
T Consensus 788 qmLDILE~~L~~l--~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d-FNP~dD~ 864 (941)
T KOG0389|consen 788 QMLDILEVVLDTL--GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID-FNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHhc--CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC-CCCcccc
Confidence 7777777778777 899999999999999999999998764 4568999999999999999999999998 7988888
Q ss_pred HHhcccCCCC--CceEEEEEecCCCc
Q 003268 581 QLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 581 Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
|.--|++|.| ++-.+|.|+++.++
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 9999999998 56778999998865
No 135
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.63 E-value=6.2e-15 Score=172.44 Aligned_cols=150 Identities=22% Similarity=0.202 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--CCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
|.|-.+|.+....+- ++...+|++||.+|||.+-..++-+.+. +..-|++++||++|++|....+..+|..
T Consensus 510 F~Pd~WQ~elLDsvD-------r~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVD-------RNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred cCCcHHHHHHhhhhh-------cccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 678889999887652 3567999999999999987677766654 4578999999999999999999998843
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc--------cccccccEEEeccccccchhhH----HHH
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--------VVYNNLGLLVVDEEQRFGVKQK----EKI 425 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~--------l~~~~l~lVIIDEaHr~g~~~~----e~l 425 (835)
..-.+...+.|..+. +- .+..-.++|+|+-|+.+... .....+.++|+||+|..|.... +.+
T Consensus 583 ~t~~rg~sl~g~ltq---EY---sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eql 656 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQ---EY---SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQL 656 (1330)
T ss_pred CccccchhhHhhhhH---Hh---cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHH
Confidence 211122222221111 11 11112589999999866431 1236789999999999876433 333
Q ss_pred HhhcCCceEEEeecCCCh
Q 003268 426 ASFKISVDVLTLSATPIP 443 (835)
Q Consensus 426 ~~~~~~~~vL~lSATp~p 443 (835)
.. -..+.+|++|||..+
T Consensus 657 l~-li~CP~L~LSATigN 673 (1330)
T KOG0949|consen 657 LL-LIPCPFLVLSATIGN 673 (1330)
T ss_pred HH-hcCCCeeEEecccCC
Confidence 22 256789999999743
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.62 E-value=1.6e-14 Score=172.26 Aligned_cols=321 Identities=21% Similarity=0.299 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH--h-------CCCEEEEEcccHHHHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV--S-------AGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~--~-------~g~qvlVLvPtr~La~Q~~~~~ 351 (835)
.++.+|++.++++. -+ . .-.-+-|+|.+.|-|||++.+-.+.... . +....+|+||.+ |+-.|..++
T Consensus 975 ~LRkYQqEGVnWLa-FL-n-ky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~ 1050 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLA-FL-N-KYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEV 1050 (1549)
T ss_pred HHHHHHHhccHHHH-HH-H-HhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHH
Confidence 46889999998763 22 1 1234569999999999999654433221 1 124589999984 888899999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccccc---ccccEEEeccccccchhh---HHHH
Q 003268 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY---NNLGLLVVDEEQRFGVKQ---KEKI 425 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~---~~l~lVIIDEaHr~g~~~---~e~l 425 (835)
.+ |..+ ++|..+.|. ..++....... .+.+|+|+.+..+.+++.+ .+|.++|+||-|-+-..+ ...+
T Consensus 1051 ~k-f~pf--L~v~~yvg~--p~~r~~lR~q~--~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kav 1123 (1549)
T KOG0392|consen 1051 KK-FFPF--LKVLQYVGP--PAERRELRDQY--KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAV 1123 (1549)
T ss_pred HH-hcch--hhhhhhcCC--hHHHHHHHhhc--cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHH
Confidence 87 5555 677777773 33443333322 2469999999999876543 678899999999874433 3344
Q ss_pred HhhcCCceEEEeecCCChhhHHHH-------HhcC------------------CCcce----------------------
Q 003268 426 ASFKISVDVLTLSATPIPRTLYLA-------LTGF------------------RDASL---------------------- 458 (835)
Q Consensus 426 ~~~~~~~~vL~lSATp~p~tl~~~-------~~~~------------------~d~s~---------------------- 458 (835)
+.++.+ +.+.+|+||+.+..... +-|+ +++..
T Consensus 1124 kqL~a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF 1202 (1549)
T KOG0392|consen 1124 KQLRAN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPF 1202 (1549)
T ss_pred HHHhhc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHH
Confidence 555444 45679999974321100 0000 00000
Q ss_pred ---------e-eCCCCCccce----------------------------------eE---------------------Ee
Q 003268 459 ---------I-STPPPERLPI----------------------------------KT---------------------HL 473 (835)
Q Consensus 459 ---------i-~~~p~~r~~V----------------------------------~~---------------------~~ 473 (835)
+ ..||....+. .+ ..
T Consensus 1203 ~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1203 LLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceee
Confidence 0 0011000000 00 00
Q ss_pred cc--------------cCHH-------HHHHHHHHHH---h---------------cCCeEEEEecCccChHHHHHHH-H
Q 003268 474 SA--------------FSKE-------KVISAIKYEL---D---------------RGGQVFYVLPRIKGLEEPMDFL-Q 513 (835)
Q Consensus 474 ~~--------------~~~~-------~~~~~i~~~l---~---------------~ggqvlVf~~~v~~ie~l~~~L-~ 513 (835)
.+ .+.. -.+.++.+.+ . .+.+++|||.-+..++.+.+-| +
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 00 0000 0122233222 1 2357999999998888887754 5
Q ss_pred hhCCCCcEEEEcCCCCHHHHHHHHHHhhcC-CeeEE-EECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCC
Q 003268 514 QAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKIL-ICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 514 ~~~p~~~V~~lHG~m~~~ere~vl~~F~~g-~~~VL-VaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
..+|.+....+.|..++.+|.++.++|+++ .+||| ++|.+.+-|+|+.++++||.+.-+ |++..-.|.+-||.|.|+
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHD-WNPMrDLQAMDRAHRIGQ 1441 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHD-WNPMRDLQAMDRAHRIGQ 1441 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecC-CCchhhHHHHHHHHhhcC
Confidence 567888888999999999999999999998 89986 577899999999999999999987 799999999999999995
Q ss_pred c--eEEEEEecCCCcCCHHHHHHHHHHHHH
Q 003268 592 E--AHAYLFYPDKSLLSDQALERLAALEEC 619 (835)
Q Consensus 592 ~--G~ay~l~~~~~~~~~~a~~rl~~i~~~ 619 (835)
+ -.+|.+++.... ++....++++
T Consensus 1442 KrvVNVyRlItrGTL-----EEKVMgLQkF 1466 (1549)
T KOG0392|consen 1442 KRVVNVYRLITRGTL-----EEKVMGLQKF 1466 (1549)
T ss_pred ceeeeeeeehhcccH-----HHHHhhHHHH
Confidence 4 667999988764 2344455554
No 137
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=99.61 E-value=1.2e-15 Score=140.16 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=71.8
Q ss_pred eeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhcCccEEEecC
Q 003268 685 DININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKIYASG 764 (835)
Q Consensus 685 ~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~~~~~~~~~~~~~~~~~i~~~~ 764 (835)
++++++++|+.||++..+|+++|+|++.+. +.+++.++..||.||||++|++|++|+.+++||.+|+++||.+|...+
T Consensus 1 dl~~~a~IP~~YI~d~~~Rl~~Yrrl~~~~--~~~el~~l~~El~DRFG~~P~ev~~L~~~~~lk~~a~~~gi~~i~~~~ 78 (101)
T PF03461_consen 1 DLPVDAYIPEDYIPDDDERLELYRRLASAE--SEEELEDLREELIDRFGPLPEEVENLLELARLKILARKLGIESIKQKG 78 (101)
T ss_dssp E-SS--S--TTTS--HHHHHHHHHHHHC----SHHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHCTECEEEEET
T ss_pred CCCccccCChHHcCChHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHCCCcEEEecC
Confidence 578999999999999999999999999976 567999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCH
Q 003268 765 KMVGMKTNMNK 775 (835)
Q Consensus 765 ~~~~~~~~~~~ 775 (835)
+.+.+.+....
T Consensus 79 ~~i~i~~~~~~ 89 (101)
T PF03461_consen 79 NSIYITFSKNK 89 (101)
T ss_dssp TEEEEEE-TTH
T ss_pred CEEEEEECCCC
Confidence 99999887553
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=9.9e-14 Score=165.06 Aligned_cols=126 Identities=20% Similarity=0.188 Sum_probs=99.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHh
Q 003268 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 275 ~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
.......|++.|.-.--.+. ...|..+.||-|||+++.+|++.....|+.|-|+.++-.||..-++.+...
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh---------~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~v 149 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLH---------EGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQV 149 (939)
T ss_pred HHHhCCCcchhHHHhhhhhc---------CCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHH
Confidence 34556688899987754442 235899999999999999998887788999999999999999999998875
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hccc-------ccccccEEEeccccc
Q 003268 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQR 416 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~l-------~~~~l~lVIIDEaHr 416 (835)
+. +.|++|+++.+..+..++...+ .+||++||+.-+ .+.+ ..+.+.+.||||+|.
T Consensus 150 y~-~LGLtvg~i~~~~~~~err~aY------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 150 HR-FLGLSVGLIQQDMSPEERKKNY------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred HH-HhCCeEEEECCCCChHHHHHhc------CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 54 4499999998887777766554 489999998765 3322 246788999999994
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=3.3e-15 Score=141.16 Aligned_cols=115 Identities=30% Similarity=0.578 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
+...+.+....+++++|||++...++.+++.|.+. +..+.++||+++..++..++..|.++...||++|+++++|+|+
T Consensus 17 i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~ 94 (131)
T cd00079 17 LLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP--GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDL 94 (131)
T ss_pred HHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc--CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcCh
Confidence 34444444446789999999999999999999884 7899999999999999999999999999999999999999999
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEE
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF 598 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l 598 (835)
|++++||+++.+ ++...+.|++||+||.|+.|.|+++
T Consensus 95 ~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 95 PNVSVVINYDLP-WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhCCEEEEeCCC-CCHHHheecccccccCCCCceEEeC
Confidence 999999999998 5999999999999999999988764
No 140
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.61 E-value=3.8e-13 Score=167.29 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=69.8
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHH-
Q 003268 274 FAAQF-PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDV- 350 (835)
Q Consensus 274 ~~~~~-~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~- 350 (835)
+...+ .|+++|-|.+.+..|.+.+.+ +..+++.|+||+|||++|++|++... ..+++++|.++|+.|..|+...
T Consensus 249 l~~~~~~~e~R~~Q~~m~~~v~~~l~~---~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kD 325 (928)
T PRK08074 249 LSLAMPKYEKREGQQEMMKEVYTALRD---SEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKD 325 (928)
T ss_pred HHHhCCCCcCCHHHHHHHHHHHHHHhc---CCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhh
Confidence 33433 479999999999999888853 46789999999999999999987643 4689999999999999998763
Q ss_pred ---HHHhhcCCCCcEEEEecCC
Q 003268 351 ---VSERFSKYPDIKVGLLSRF 369 (835)
Q Consensus 351 ---~~~~f~~~~gi~V~~l~g~ 369 (835)
+++.+ ++ .++++++-|.
T Consensus 326 iP~L~~~~-~~-~~~~~~lKGr 345 (928)
T PRK08074 326 IPLLQKIF-PF-PVEAALLKGR 345 (928)
T ss_pred HHHHHHHc-CC-CceEEEEEcc
Confidence 44333 23 3666666543
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=8.9e-15 Score=163.44 Aligned_cols=263 Identities=16% Similarity=0.220 Sum_probs=170.9
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhc
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH 384 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~ 384 (835)
-++-+|||.||||--|+.-. ...+..++--|.|.||.++++++.+. |+.|-+++|.... . ..-+
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl----~~aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~----~---~~~~ 256 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRL----KSAKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERR----F---VLDN 256 (700)
T ss_pred EEEEeCCCCCchhHHHHHHH----hhhccceecchHHHHHHHHHHHhhhc-----CCCccccccceee----e---cCCC
Confidence 35668999999997765443 44577899999999999999999874 7889999884321 1 1111
Q ss_pred C-CcceEecchHhhhcccccccccEEEeccccccchhhH-----HHHHhh-cCCceEEEeecCCChhhHHHHHhcCCCcc
Q 003268 385 G-HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK-----EKIASF-KISVDVLTLSATPIPRTLYLALTGFRDAS 457 (835)
Q Consensus 385 g-~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~-----e~l~~~-~~~~~vL~lSATp~p~tl~~~~~~~~d~s 457 (835)
| .+..+-||-++..-. ..+++.||||+|.+...++ +.+..+ ...+++ -+-| ..+.+...-
T Consensus 257 ~~~a~hvScTVEM~sv~---~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHL---CGep--svldlV~~i----- 323 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVSVN---TPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHL---CGEP--SVLDLVRKI----- 323 (700)
T ss_pred CCcccceEEEEEEeecC---CceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhc---cCCc--hHHHHHHHH-----
Confidence 2 356677776666422 3578999999998844332 222221 122222 2222 111111100
Q ss_pred eeeCCCCCccceeEEecccCHHHHHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHH
Q 003268 458 LISTPPPERLPIKTHLSAFSKEKVISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEE 535 (835)
Q Consensus 458 ~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~ 535 (835)
.....+...|..|-. .++-.+.+.+...+. +.|+++|-+ +++++-.+...+.+.. +.++++++|+++++.|.+
T Consensus 324 --~k~TGd~vev~~YeR-l~pL~v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g-~~k~aVIYGsLPPeTr~a 398 (700)
T KOG0953|consen 324 --LKMTGDDVEVREYER-LSPLVVEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAG-NHKCAVIYGSLPPETRLA 398 (700)
T ss_pred --HhhcCCeeEEEeecc-cCcceehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhc-CcceEEEecCCCCchhHH
Confidence 001111222222211 111112222222222 346665543 5677888888888772 456999999999999999
Q ss_pred HHHHhhc--CCeeEEEECCcCccCCCCCCcCEEEEecCCCCC--------HhHHHHHhcccCCCC---CceEEEEEecCC
Q 003268 536 TMEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQFG--------LAQLYQLRGRVGRAD---KEAHAYLFYPDK 602 (835)
Q Consensus 536 vl~~F~~--g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~s--------l~~l~Qr~GRaGR~g---~~G~ay~l~~~~ 602 (835)
.-..|++ ++++||||||.+++|+|+. ++.||.++..+|+ .+|..|.+|||||.| ..|++-.+..++
T Consensus 399 QA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 399 QAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred HHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 9999998 8999999999999999996 9999998876553 578999999999987 468888887544
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.55 E-value=1.2e-14 Score=126.43 Aligned_cols=77 Identities=34% Similarity=0.659 Sum_probs=72.7
Q ss_pred HHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC
Q 003268 511 FLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD 590 (835)
Q Consensus 511 ~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g 590 (835)
.|+.. ++.+..+||+++..+|+.+++.|.+++.+|||||+++++|+|+|++++||+++++ +++.+|.|++||+||.|
T Consensus 2 ~L~~~--~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~-~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKK--GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPP-WSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHT--TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSE-SSHHHHHHHHTTSSTTT
T ss_pred ChHHC--CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccC-CCHHHHHHHhhcCCCCC
Confidence 45555 8999999999999999999999999999999999999999999999999999998 59999999999999986
No 143
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.55 E-value=5.3e-14 Score=132.53 Aligned_cols=131 Identities=36% Similarity=0.436 Sum_probs=99.2
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHh--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhH
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
+++++|+||+|||.+++..+..... ..+.++|++|++.++.|+.+.+...+.. +..+.++.+........ ..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~ 75 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQE----KL 75 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHH----HH
Confidence 5799999999999999888877664 4579999999999999999998875543 47788888765554432 22
Q ss_pred hcCCcceEecchHhhhcccc-----cccccEEEeccccccchhhHHH-----HHhhcCCceEEEeecCC
Q 003268 383 KHGHLNIIVGTHSLLGSRVV-----YNNLGLLVVDEEQRFGVKQKEK-----IASFKISVDVLTLSATP 441 (835)
Q Consensus 383 ~~g~~dIIIgT~~~L~~~l~-----~~~l~lVIIDEaHr~g~~~~e~-----l~~~~~~~~vL~lSATp 441 (835)
.....+|+++|+..+..... ..+++++|+||+|.+....... .........++++||||
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 23568999999997764332 3478999999999985543322 33445778899999997
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.53 E-value=7.7e-12 Score=147.74 Aligned_cols=115 Identities=17% Similarity=0.262 Sum_probs=82.5
Q ss_pred HHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhc----CCeeEEEECCcCc
Q 003268 481 VISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ----GAIKILICTNIVE 555 (835)
Q Consensus 481 ~~~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~----g~~~VLVaT~iie 555 (835)
+.+.+...+. .+|.++|.+.+...++.+++.|....+ +. ..+.|..+ .+...++.|++ |...||++|..+.
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIP-AE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcC-CC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 4444555554 568999999999999999999987654 34 45566543 34567788886 4789999999999
Q ss_pred cCCCC----------CCcCEEEEecCCCCCH-------------------------hHHHHHhcccCCCCC---ceEEEE
Q 003268 556 SGLDI----------QNANTIIVQDVQQFGL-------------------------AQLYQLRGRVGRADK---EAHAYL 597 (835)
Q Consensus 556 ~GIDI----------p~v~~VIi~d~p~~sl-------------------------~~l~Qr~GRaGR~g~---~G~ay~ 597 (835)
+|||+ ..+..||+...| |.+ -.+.|-+||-=|... .|...+
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLP-F~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~i 612 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAP-FGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHM 612 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCC-CCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEE
Confidence 99999 248889987776 321 135688999888764 465555
Q ss_pred Eec
Q 003268 598 FYP 600 (835)
Q Consensus 598 l~~ 600 (835)
+-+
T Consensus 613 lD~ 615 (636)
T TIGR03117 613 LDG 615 (636)
T ss_pred EeC
Confidence 543
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.49 E-value=2.3e-12 Score=142.45 Aligned_cols=316 Identities=13% Similarity=0.126 Sum_probs=200.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~g 360 (835)
.+-|+|++.+...++ ++..+++..++|-|||.+|+..+..... .-..+|+||.. +-..|.+.+...|...
T Consensus 198 ~LlPFQreGv~faL~------RgGR~llADeMGLGKTiQAlaIA~yyra-EwplliVcPAs-vrftWa~al~r~lps~-- 267 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE------RGGRILLADEMGLGKTIQALAIARYYRA-EWPLLIVCPAS-VRFTWAKALNRFLPSI-- 267 (689)
T ss_pred hhCchhhhhHHHHHh------cCCeEEEecccccchHHHHHHHHHHHhh-cCcEEEEecHH-HhHHHHHHHHHhcccc--
Confidence 567889999887764 3567999999999999998766655433 45688999984 5567888887655443
Q ss_pred cEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc---ccccccccEEEeccccccchhhHHHHH----hhcCCce
Q 003268 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---RVVYNNLGLLVVDEEQRFGVKQKEKIA----SFKISVD 433 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~---~l~~~~l~lVIIDEaHr~g~~~~e~l~----~~~~~~~ 433 (835)
..|.++.+..+.-. .+.. ...|.|.++..++. .+.-..+++||+||.|.+-.......+ -.....+
T Consensus 268 ~pi~vv~~~~D~~~------~~~t-~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 268 HPIFVVDKSSDPLP------DVCT-SNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKH 340 (689)
T ss_pred cceEEEecccCCcc------cccc-CCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhh
Confidence 22444444332211 1111 14677888877753 233456999999999987543332222 2234568
Q ss_pred EEEeecCCC---hhh----------------HHHHHhcCCCcc---------------------------------eeeC
Q 003268 434 VLTLSATPI---PRT----------------LYLALTGFRDAS---------------------------------LIST 461 (835)
Q Consensus 434 vL~lSATp~---p~t----------------l~~~~~~~~d~s---------------------------------~i~~ 461 (835)
+|++|+||. |.. ..++..+ .+.. ++..
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rY-Cd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRY-CDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHh-cCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999983 210 0111111 1100 0111
Q ss_pred CCCCccceeEEecccCH--------------------------------------HHHHHHHHH---HH-hcCCeEEEEe
Q 003268 462 PPPERLPIKTHLSAFSK--------------------------------------EKVISAIKY---EL-DRGGQVFYVL 499 (835)
Q Consensus 462 ~p~~r~~V~~~~~~~~~--------------------------------------~~~~~~i~~---~l-~~ggqvlVf~ 499 (835)
.|+.|..|......... ..+.+.|.. .. ..+.+++||+
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 22333332221110000 011122221 01 2346899999
Q ss_pred cCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC-CeeE-EEECCcCccCCCCCCcCEEEEecCCCCCHh
Q 003268 500 PRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIKI-LICTNIVESGLDIQNANTIIVQDVQQFGLA 577 (835)
Q Consensus 500 ~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g-~~~V-LVaT~iie~GIDIp~v~~VIi~d~p~~sl~ 577 (835)
....-.+.+...+.+. ++....+.|..++..|+...+.|... +..| +++-+.+++|+|+..++.|+....+ |++.
T Consensus 500 HH~~vLd~Iq~~~~~r--~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~-wnPg 576 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKR--KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH-WNPG 576 (689)
T ss_pred hhHHHHHHHHHHHHHc--CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec-CCCc
Confidence 9888888888888887 78888999999999999999999865 4444 6788899999999999999988887 6999
Q ss_pred HHHHHhcccCCCCCceEE--EEEecCCCcCCHHHHHHHHHHH
Q 003268 578 QLYQLRGRVGRADKEAHA--YLFYPDKSLLSDQALERLAALE 617 (835)
Q Consensus 578 ~l~Qr~GRaGR~g~~G~a--y~l~~~~~~~~~~a~~rl~~i~ 617 (835)
-+.|.-.|+.|.|+..-+ |.|+.+.+...-....-.+.+.
T Consensus 577 vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 999999999999976544 4555555543333333333333
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.46 E-value=8.5e-13 Score=155.77 Aligned_cols=309 Identities=17% Similarity=0.217 Sum_probs=206.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH---HHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF---CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~---~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
++.++|...+.++.. |.+ ..-+-++...+|-|||.+-+..+. ......+.-+|+||+-.|.+. ..+ |..
T Consensus 394 ~Lk~YQl~GLqWmVS-LyN--NnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW-~~E----f~k 465 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVS-LYN--NNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSE----FPK 465 (1157)
T ss_pred CCchhhhhhhHHHhh-ccC--CCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCc-hhh----ccc
Confidence 778999999988765 322 234678999999999998544333 233335678999999998863 333 444
Q ss_pred C-CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc-c--ccccEEEeccccccchhhHHH---HHhhcC
Q 003268 358 Y-PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y--NNLGLLVVDEEQRFGVKQKEK---IASFKI 430 (835)
Q Consensus 358 ~-~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~-~--~~l~lVIIDEaHr~g~~~~e~---l~~~~~ 430 (835)
+ |.+......| +..++......+..|+++|+++|+..+.++-. + -++.++||||.||+...+... +.....
T Consensus 466 WaPSv~~i~YkG--tp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 466 WAPSVQKIQYKG--TPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYR 543 (1157)
T ss_pred cccceeeeeeeC--CHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhcccc
Confidence 3 4566666666 67777777777888999999999988765422 2 356789999999997655433 222223
Q ss_pred CceEEEeecCCChhhHHHHH-----------------hcCCCcceeeC--------------------------------
Q 003268 431 SVDVLTLSATPIPRTLYLAL-----------------TGFRDASLIST-------------------------------- 461 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~-----------------~~~~d~s~i~~-------------------------------- 461 (835)
....+++|+||....+...+ ..|.+.++-.+
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 44567899998633211100 00000000000
Q ss_pred -----CCC------------------------CccceeE--------------------------------Ee-cccCH-
Q 003268 462 -----PPP------------------------ERLPIKT--------------------------------HL-SAFSK- 478 (835)
Q Consensus 462 -----~p~------------------------~r~~V~~--------------------------------~~-~~~~~- 478 (835)
.|. ....+.+ .+ ..+..
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~ 703 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIK 703 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChh
Confidence 000 0000000 00 00001
Q ss_pred --------HHHHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCC---ee
Q 003268 479 --------EKVISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA---IK 546 (835)
Q Consensus 479 --------~~~~~~i~~~l-~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~---~~ 546 (835)
..+++.+.-.+ .-|+.|+.||....-...+..+|.-. +++...+.|....++|-..+..|.... ..
T Consensus 704 dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~--~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~ 781 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR--EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFI 781 (1157)
T ss_pred HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh--hhheeeecCCcchhhHHHHHHHhcCCCCceee
Confidence 11122222112 34789999998888888888888766 889999999999999999999998765 45
Q ss_pred EEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCc--eEEEEEecCC
Q 003268 547 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDK 602 (835)
Q Consensus 547 VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~ 602 (835)
+|++|-..+.|+|+..+++||+||.+ |++.+..|+--|+.|.|.. ..++.+.+-.
T Consensus 782 FllstragglglNlQtadtviifdsd-wnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQTADTVIIFDSD-WNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred eeeeecccccccchhhcceEEEecCC-CCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 78999999999999999999999998 7999999999999999954 5555565544
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.45 E-value=9.6e-11 Score=141.82 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=59.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhcC--CCCCcEEEEccCCCccHHHHHHHHHH-HHhCCCEEEEEcccHHHHHHHHH
Q 003268 279 PYEPTPDQKKAFLDVERDLTER--ETPMDRLICGDVGFGKTEVALRAIFC-VVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~--~~~~d~LI~g~TGsGKT~val~a~~~-~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
.|+.+|-|.+.+..|.+.+.+. ..+..++|.|+||+|||++||+|+.. +...+++|+|-+.|+.|-.|+..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 4899999999999999888532 11456889999999999999999875 44578999999999999999864
No 148
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.44 E-value=5.7e-13 Score=148.54 Aligned_cols=307 Identities=14% Similarity=0.092 Sum_probs=204.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
....+|.+++..+-+ |.+.++.-.|.+||.+++-.++..... .....++..|+.++++...+-+.-.+...
T Consensus 286 ~~~~~~~~~~~~~~~-------G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I 358 (1034)
T KOG4150|consen 286 SGIAISLELLKFASE-------GRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVI 358 (1034)
T ss_pred chhhhhHHHHhhhhh-------cccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEeh
Confidence 345789999887643 567888899999999998777665433 34567888999999876554443333333
Q ss_pred CCcEEEE---ecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----cccc----ccccEEEecccccc----chh--
Q 003268 359 PDIKVGL---LSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVY----NNLGLLVVDEEQRF----GVK-- 420 (835)
Q Consensus 359 ~gi~V~~---l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~----~~l~lVIIDEaHr~----g~~-- 420 (835)
|..+-++ ..+. +..+. .++..-..+++++.|..... .+.+ -.+.++++||+|-+ +..
T Consensus 359 ~~~K~A~V~~~D~~-sE~~~----~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 359 KARKSAYVEMSDKL-SETTK----SALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred hhhhcceeecccCC-CchhH----HHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 3333222 2232 22221 22233348899998865532 2222 34567999999974 221
Q ss_pred -hHHHHHhh------cCCceEEEeecCCChhhHHHH-HhcCCCcceeeCC--CCCccceeEEec---cc----CHH---H
Q 003268 421 -QKEKIASF------KISVDVLTLSATPIPRTLYLA-LTGFRDASLISTP--PPERLPIKTHLS---AF----SKE---K 480 (835)
Q Consensus 421 -~~e~l~~~------~~~~~vL~lSATp~p~tl~~~-~~~~~d~s~i~~~--p~~r~~V~~~~~---~~----~~~---~ 480 (835)
+.+.+..+ ..+.+++-.|||.-.++.++. +.++....++... |....-...+-. +. ... .
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 22223222 357899999999877666554 4566666665542 222111111100 00 011 2
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhC----CCC--cEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAF----PGV--DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~----p~~--~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~ii 554 (835)
....+.+.+..+-+++-||+.++-||-+....++.+ |.. .|..+.|+-..++|.++..+.-.|+..-+|+|+.+
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 223344556678899999999988887766655443 211 34556799999999999999999999999999999
Q ss_pred ccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEec
Q 003268 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 555 e~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~ 600 (835)
+-||||..++.|+..+.| +|++.++|..|||||.++...+..+..
T Consensus 594 ELGIDIG~LDAVl~~GFP-~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFP-GSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred hhccccccceeEEEccCc-hhHHHHHHHhccccccCCCceEEEEEe
Confidence 999999999999999999 499999999999999998887765543
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=3.4e-11 Score=144.98 Aligned_cols=132 Identities=21% Similarity=0.220 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCC
Q 003268 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLD 559 (835)
Q Consensus 480 ~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GID 559 (835)
.+.+.+.+....|..|||-+.+++..|.+++.|... ++..-++++.....+-+-|-+.=. .-.|-|||++++||.|
T Consensus 616 Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTD 691 (1112)
T PRK12901 616 AVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTD 691 (1112)
T ss_pred HHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcC
Confidence 445555556678899999999999999999999987 777667777655444433333333 3458999999999999
Q ss_pred CC--------CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC-CcCCHHHHHHHHHH
Q 003268 560 IQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK-SLLSDQALERLAAL 616 (835)
Q Consensus 560 Ip--------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~-~~~~~~a~~rl~~i 616 (835)
|. +==+||....+. |..--.|.+||+||.|.+|.+-+|++-+ ++....+.+|+..+
T Consensus 692 IkLg~~V~e~GGL~VIgTerhe-SrRID~QLrGRaGRQGDPGsS~f~lSLEDdLmr~Fgs~ri~~~ 756 (1112)
T PRK12901 692 IKLSPEVKAAGGLAIIGTERHE-SRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKV 756 (1112)
T ss_pred cccchhhHHcCCCEEEEccCCC-cHHHHHHHhcccccCCCCCcceEEEEcccHHHHhhCcHHHHHH
Confidence 96 223556554443 6667789999999999999998888744 33333444444444
No 150
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.42 E-value=7e-13 Score=114.73 Aligned_cols=81 Identities=36% Similarity=0.624 Sum_probs=75.2
Q ss_pred HHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhccc
Q 003268 507 EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRV 586 (835)
Q Consensus 507 ~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRa 586 (835)
.+++.|+.. ++.+..+||+++..+|..++..|.++..+|||+|+++++|+|+|++++||+++.+ ++..+|.|++||+
T Consensus 2 ~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~-~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKEL--GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLP-WSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHC--CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCC-CCHHHHHHhhccc
Confidence 456677776 7899999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred CCCC
Q 003268 587 GRAD 590 (835)
Q Consensus 587 GR~g 590 (835)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9975
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.41 E-value=5.6e-11 Score=143.82 Aligned_cols=316 Identities=17% Similarity=0.134 Sum_probs=180.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhhcCC-CCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHHHHHH
Q 003268 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERE-TPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 271 ~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~-~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~La~Q~ 347 (835)
.+.|...-.-.-..+|-+|++.+..--.... .|-=.+=.|.||||||++=.+.|...... |.+..|-.-.|.|..|.
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQT 477 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQT 477 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccc
Confidence 3445433333446789999998765221111 12233346999999999865555443332 45788888899999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHH------------------HHH----------------------hHh-c--
Q 003268 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEE------------------HLD----------------------MIK-H-- 384 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~------------------~l~----------------------~l~-~-- 384 (835)
-+.++++++-- +-..+++.|+....+-.+ .+. .+. +
T Consensus 478 Gda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 478 GHALKTRLNLS-DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred hHHHHHhcCCC-ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 99999887543 456677766432211110 000 000 0
Q ss_pred ----CCcceEecchHhhhccc-cc-------c--c--ccEEEeccccccchhhHHHHHhh-----cCCceEEEeecCCCh
Q 003268 385 ----GHLNIIVGTHSLLGSRV-VY-------N--N--LGLLVVDEEQRFGVKQKEKIASF-----KISVDVLTLSATPIP 443 (835)
Q Consensus 385 ----g~~dIIIgT~~~L~~~l-~~-------~--~--l~lVIIDEaHr~g~~~~e~l~~~-----~~~~~vL~lSATp~p 443 (835)
=..+|+|||...+.... .+ . . -+.|||||+|-+.......|.++ ..+..|++||||.+|
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 02478899986554221 11 1 1 25699999999865444333322 357889999999987
Q ss_pred hhHHHH-------------HhcCCCcc--eee-----------------------------------CCCCCccceeEEe
Q 003268 444 RTLYLA-------------LTGFRDAS--LIS-----------------------------------TPPPERLPIKTHL 473 (835)
Q Consensus 444 ~tl~~~-------------~~~~~d~s--~i~-----------------------------------~~p~~r~~V~~~~ 473 (835)
...... ..+....+ +.. ..|..|.....-+
T Consensus 637 ~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~ 716 (1110)
T TIGR02562 637 ALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSL 716 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeec
Confidence 543211 11111111 100 0111111100001
Q ss_pred cccC--H----HHHHHHHHHHH-----------h-cCCeE---EEEecCccChHHHHHHHHhhCC----CCcEEEEcCCC
Q 003268 474 SAFS--K----EKVISAIKYEL-----------D-RGGQV---FYVLPRIKGLEEPMDFLQQAFP----GVDIAIAHGQQ 528 (835)
Q Consensus 474 ~~~~--~----~~~~~~i~~~l-----------~-~ggqv---lVf~~~v~~ie~l~~~L~~~~p----~~~V~~lHG~m 528 (835)
.... . ..+.+.+.+.+ . .+.+| +|-+++++.+-.++..|....+ .+.++++|++.
T Consensus 717 ~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~ 796 (1110)
T TIGR02562 717 SSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQD 796 (1110)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccC
Confidence 1100 1 12222222221 1 12222 5566777777778887776643 24588999998
Q ss_pred CHHHHHHHHHHh----------------------hc----CCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHH
Q 003268 529 YSRQLEETMEKF----------------------AQ----GAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 529 ~~~ere~vl~~F----------------------~~----g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr 582 (835)
.-..|..+.+.. .+ +...|+|+|+++|.|+|+. .+.+|.. +. ++.+++|+
T Consensus 797 ~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~~-~~--~~~sliQ~ 872 (1110)
T TIGR02562 797 PLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIAD-PS--SMRSIIQL 872 (1110)
T ss_pred hHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeeec-cC--cHHHHHHH
Confidence 766665544332 12 4678999999999999997 7777753 32 57999999
Q ss_pred hcccCCCCC
Q 003268 583 RGRVGRADK 591 (835)
Q Consensus 583 ~GRaGR~g~ 591 (835)
+||+.|.+.
T Consensus 873 aGR~~R~~~ 881 (1110)
T TIGR02562 873 AGRVNRHRL 881 (1110)
T ss_pred hhccccccc
Confidence 999999874
No 152
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.39 E-value=7.4e-12 Score=150.10 Aligned_cols=296 Identities=20% Similarity=0.251 Sum_probs=207.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCc
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDI 361 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi 361 (835)
..|+|.++++.+.+ .+.++++++|+|||||.++-.+++.. ..-.++++++|.-+.+...++.+..+|+...|.
T Consensus 1144 ~n~iqtqVf~~~y~------~nd~v~vga~~gsgkt~~ae~a~l~~-~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYN------TNDNVLVGAPNGSGKTACAELALLRP-DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred cCCceEEEEeeeec------ccceEEEecCCCCchhHHHHHHhcCC-ccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 38999999887753 35789999999999999998888762 334689999999999999999999999988899
Q ss_pred EEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccch----------hhHHHHHhhcCC
Q 003268 362 KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV----------KQKEKIASFKIS 431 (835)
Q Consensus 362 ~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~----------~~~e~l~~~~~~ 431 (835)
.+.-++|..+..-+. +. .-+|+|+||+.+..--....+++.|+||.|..|. ..+-.-.++-+.
T Consensus 1217 ~~~~l~ge~s~~lkl-----~~--~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLKL-----LQ--KGQVIISTPEQWDLLQSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred eEEecCCccccchHH-----hh--hcceEEechhHHHHHhhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhh
Confidence 999999977654322 22 2589999998654222557889999999998752 112222344567
Q ss_pred ceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc-cceeEEecccC-----------HHHHHHHHHHHHhcCCeEEEEe
Q 003268 432 VDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFS-----------KEKVISAIKYELDRGGQVFYVL 499 (835)
Q Consensus 432 ~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r-~~V~~~~~~~~-----------~~~~~~~i~~~l~~ggqvlVf~ 499 (835)
.+++.+|..... .....|.....++...|..| .|...++..++ .+-...++.+....+...+||+
T Consensus 1290 ir~v~ls~~lan---a~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1290 IRVVALSSSLAN---ARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eeEEEeehhhcc---chhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 888888766521 11224444444555555544 23333332221 1234566666667788999999
Q ss_pred cCccChHHHHHHH-----------------------HhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCcc
Q 003268 500 PRIKGLEEPMDFL-----------------------QQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES 556 (835)
Q Consensus 500 ~~v~~ie~l~~~L-----------------------~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~ 556 (835)
|+.+.+..++..+ ++. .+..+-|-+++..+.+.+-.-|..|.+.|+|...- ..
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~---l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRES---LKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhc---ccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 9988765543222 221 23333488999999999999999999999987766 77
Q ss_pred CCCCCCcCEEEEecCC----------CCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 557 GLDIQNANTIIVQDVQ----------QFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p----------~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
|+-.. .+.||+.+.. .|.++.+.|++|+|.| .|.|+++....
T Consensus 1443 ~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~ 1494 (1674)
T KOG0951|consen 1443 GTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTP 1494 (1674)
T ss_pred ccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCc
Confidence 87776 6777764321 3568899999999988 57888887543
No 153
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=99.34 E-value=2.6e-12 Score=117.51 Aligned_cols=97 Identities=33% Similarity=0.470 Sum_probs=72.7
Q ss_pred CCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCC-cccChhhhhHHhhhccCCCCCCchHHHhhccCCch
Q 003268 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTA 231 (835)
Q Consensus 153 ~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~ 231 (835)
.+++||+|||.+||+|+|.|++....+ +..+||+.|+|++++ .++|++++. .+.||.++.+. . +.|++|+. ..
T Consensus 1 mf~~GD~VVh~~~Gv~~i~~i~~~~~~--~~~~~yy~L~~~~~~~i~vPv~~~~-~i~R~v~~~~~-~-~~l~~L~~-~~ 74 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGVGRIEGIEEIEFG--GEKQEYYVLEYADDDTIYVPVDNAD-KIGRYVGSREE-A-PLLDKLGS-IE 74 (98)
T ss_dssp T--TTSEEEETTTEEEEEEEEEEEECT--TEEEEEEEEEECCCEEEEEECCCGG-GEEE--SS-SS-S------TT--SH
T ss_pred CCCCCCEEEECCCceEEEEEEEEEeeC--CeeEEEEEEEECCCCEEEEEcCChh-hccCCcCCccc-h-hHHHHcCC-hh
Confidence 478999999999999999999854332 678999999999996 789999974 56799987754 3 89999986 67
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 003268 232 WERRKTKGKVAIQKMVVDLMELYL 255 (835)
Q Consensus 232 w~~~~~~~~~~~~~~~~~l~~l~~ 255 (835)
|++++.+.+......+.++++.|+
T Consensus 75 W~~r~~~lk~~~~~~~~~lik~l~ 98 (98)
T PF02559_consen 75 WKKRKRKLKSGDIEEAAELIKLLA 98 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHhC
Confidence 999999999999999999998875
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.28 E-value=3.9e-10 Score=136.31 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=61.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
.+|++++.|.+.+..+...+. .+...++.||||+|||+.|+.|++... ..+++++|.++|+.|-.|..++...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~---~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALK---GGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHc---CCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 466999999999999987553 245599999999999999999988654 4468999999999999999887654
No 155
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=2.2e-09 Score=130.76 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=65.2
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CC--CEEEEEcccHHHHHHHHHHH
Q 003268 276 AQFPYEP-TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG--KQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 276 ~~~~~~~-tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g--~qvlVLvPtr~La~Q~~~~~ 351 (835)
-.|||++ +|.|.+.+..+.+.+.+ +.+.++.+|||+|||++.|.+++.... .+ .++++.+.|..=..|..+++
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~---~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDR---GDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhcc---CCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHH
Confidence 3589987 99999999999998743 578999999999999999999988765 34 68999999999999999999
Q ss_pred HH
Q 003268 352 SE 353 (835)
Q Consensus 352 ~~ 353 (835)
+.
T Consensus 81 k~ 82 (705)
T TIGR00604 81 RK 82 (705)
T ss_pred Hh
Confidence 86
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.24 E-value=4e-10 Score=129.34 Aligned_cols=157 Identities=18% Similarity=0.290 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH-----HhC-----CCEEEEEcccHHHHHHHH
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-----VSA-----GKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~-----~~~-----g~qvlVLvPtr~La~Q~~ 348 (835)
.+.+-|+|..|+.++.- .++..+..-|+..+.|-|||+..+..++.. ..+ ....||+||- .|..||+
T Consensus 323 ~v~LmpHQkaal~Wl~w--RE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~ 399 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLW--RESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWE 399 (901)
T ss_pred eeecchhhhhhhhhhcc--cccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHH
Confidence 35788999999988763 355666778999999999999755444421 111 1258999997 5788999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----------ccc--ccccEEEecccc
Q 003268 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----------VVY--NNLGLLVVDEEQ 415 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----------l~~--~~l~lVIIDEaH 415 (835)
.++..++... -++|.+++|.....-..+.+ .++||||+|+.++.+. -.+ -.|.-||+||||
T Consensus 400 ~Ev~~rl~~n-~LsV~~~HG~n~r~i~~~~L-----~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH 473 (901)
T KOG4439|consen 400 AEVARRLEQN-ALSVYLYHGPNKREISAKEL-----RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAH 473 (901)
T ss_pred HHHHHHHhhc-ceEEEEecCCccccCCHHHH-----hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhh
Confidence 9999999887 48999999965322212222 2589999999877541 111 135669999999
Q ss_pred ccchh---hHHHHHhhcCCceEEEeecCCChhh
Q 003268 416 RFGVK---QKEKIASFKISVDVLTLSATPIPRT 445 (835)
Q Consensus 416 r~g~~---~~e~l~~~~~~~~vL~lSATp~p~t 445 (835)
..-.. ....+..+.. ...-++|+||+...
T Consensus 474 ~IrN~~tq~S~AVC~L~a-~~RWclTGTPiqNn 505 (901)
T KOG4439|consen 474 NIRNSNTQCSKAVCKLSA-KSRWCLTGTPIQNN 505 (901)
T ss_pred hhcccchhHHHHHHHHhh-cceeecccCccccc
Confidence 76321 1222333322 23457899987543
No 157
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.24 E-value=6e-12 Score=146.64 Aligned_cols=368 Identities=20% Similarity=0.241 Sum_probs=217.9
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCC-----CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g-----~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
.-++|-+.||+|||..+..-++.....+ ..+.+..|||.-+..+++++...-+.-.+-.|++-.++.+...+.
T Consensus 394 ~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prp-- 471 (1282)
T KOG0921|consen 394 RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRP-- 471 (1282)
T ss_pred ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccc--
Confidence 4578899999999999877777665432 356778899999999998887644333356677777776654431
Q ss_pred HHhHhcCCcceEecchHhhhccc--ccccccEEEeccccccchhh---HHH---HHhhcCCceEEEeecCCChhhHHHHH
Q 003268 379 LDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVKQ---KEK---IASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 379 l~~l~~g~~dIIIgT~~~L~~~l--~~~~l~lVIIDEaHr~g~~~---~e~---l~~~~~~~~vL~lSATp~p~tl~~~~ 450 (835)
.--|.++|-+-+.... -+....++|+||.|++.+.. +.. +........+++||||..-..+ .
T Consensus 472 -------yg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f---~ 541 (1282)
T KOG0921|consen 472 -------YGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLF---T 541 (1282)
T ss_pred -------ccceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhh---h
Confidence 1257888887665432 25677899999999874321 222 2233456777788888533211 1
Q ss_pred hcCCCcceeeC---------------------CCCCccceeE-----Eeccc----------------------------
Q 003268 451 TGFRDASLIST---------------------PPPERLPIKT-----HLSAF---------------------------- 476 (835)
Q Consensus 451 ~~~~d~s~i~~---------------------~p~~r~~V~~-----~~~~~---------------------------- 476 (835)
.++.+.+.+.. .|....+++. .....
T Consensus 542 ~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~s 621 (1282)
T KOG0921|consen 542 NFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLS 621 (1282)
T ss_pred hhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcch
Confidence 11111111100 0111111000 00000
Q ss_pred ---CHHHHHHHHHHHH-hc--CCeEEEEecCccChHHHHHHHHhh--C---CCCcEEEEcCCCCHHHHHHHHHHhhcCCe
Q 003268 477 ---SKEKVISAIKYEL-DR--GGQVFYVLPRIKGLEEPMDFLQQA--F---PGVDIAIAHGQQYSRQLEETMEKFAQGAI 545 (835)
Q Consensus 477 ---~~~~~~~~i~~~l-~~--ggqvlVf~~~v~~ie~l~~~L~~~--~---p~~~V~~lHG~m~~~ere~vl~~F~~g~~ 545 (835)
....+.+++...+ .+ .+-+++|.+.-..+-.++.+|... + ..+.+...|+.....++.++++....|..
T Consensus 622 e~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~ 701 (1282)
T KOG0921|consen 622 EKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVT 701 (1282)
T ss_pred hhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccccc
Confidence 0012233333222 22 367899999988888888877643 1 23578889999999999999999999999
Q ss_pred eEEEECCcCccCCCCCCcCEEEEecCCC----------------C-CHhHHHHHhcccCCCCCceEEEEEecCCCcCCHH
Q 003268 546 KILICTNIVESGLDIQNANTIIVQDVQQ----------------F-GLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQ 608 (835)
Q Consensus 546 ~VLVaT~iie~GIDIp~v~~VIi~d~p~----------------~-sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~ 608 (835)
+++++|+++++.+.+.++..||+.+... | +.-...|+.||+||. +.|+|+.+.+.-
T Consensus 702 kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a------ 774 (1282)
T KOG0921|consen 702 KIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA------ 774 (1282)
T ss_pred ccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH------
Confidence 9999999999999999988888754321 0 234678999999997 789999987532
Q ss_pred HHHHHHHHHHHh--hc----ccchhhhhhhhccccCCCcccccccCCc-c-cchHHHHHHHHHHHHHhhcCcccccccCc
Q 003268 609 ALERLAALEECR--EL----GQGFQLAEKDMGIRGFGTIFGEQQTGDV-G-NVGVDLFFEMLFESLSKVDEHCVISVPYK 680 (835)
Q Consensus 609 a~~rl~~i~~~~--~l----~sg~~la~~dL~irG~g~~lg~~q~g~i-~-~vg~~~y~~~L~~ai~~l~~~~~~~~~~g 680 (835)
|..++++.. ++ ..-..+..+-+.+-..+.+++....-.+ + .+..+. +.....+++.+. +.+++|
T Consensus 775 ---rF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~----~l~~m~~ld~n~-elt~lg 846 (1282)
T KOG0921|consen 775 ---RFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEA----VLREMGALDAND-ELTPLG 846 (1282)
T ss_pred ---HHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchH----HHHHhhhhhccC-cccchh
Confidence 222222210 00 0011111122211123333332211111 1 112222 111223333322 346788
Q ss_pred ceEEeeecCCCCcccccc
Q 003268 681 SVQIDININPRLPSEYIN 698 (835)
Q Consensus 681 ~~~~~l~idp~~~~~~i~ 698 (835)
...+.+|+.|++.+.++.
T Consensus 847 ~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 847 RMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred hhhhhccCcccccceeee
Confidence 889999999999988887
No 158
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.22 E-value=9.4e-11 Score=126.82 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhh------hcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC-----CEEEEEcccHHHHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDL------TERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 285 ~Q~~AI~~Il~~l------~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g-----~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+|.+|+..++.-. .........|++.++|+|||..++..+......+ ..+||++|. .+..||..++..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5999999887643 1123457899999999999998876665333222 259999999 777899999988
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh-----c---ccccccccEEEeccccccch---hhH
Q 003268 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----S---RVVYNNLGLLVVDEEQRFGV---KQK 422 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~-----~---~l~~~~l~lVIIDEaHr~g~---~~~ 422 (835)
.+... ..++..+.+..... ....-.....+++|+|++.+. . .+.--++++||+||+|.+.. ...
T Consensus 80 ~~~~~-~~~v~~~~~~~~~~----~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~ 154 (299)
T PF00176_consen 80 WFDPD-SLRVIIYDGDSERR----RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY 154 (299)
T ss_dssp HSGT--TS-EEEESSSCHHH----HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHH
T ss_pred ccccc-cccccccccccccc----cccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccc
Confidence 55332 46888887764111 111112245899999999887 1 22224589999999999832 233
Q ss_pred HHHHhhcCCceEEEeecCCChhhH
Q 003268 423 EKIASFKISVDVLTLSATPIPRTL 446 (835)
Q Consensus 423 e~l~~~~~~~~vL~lSATp~p~tl 446 (835)
..+..+. ...++++||||.+...
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~n~~ 177 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQNSL 177 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SSSGS
T ss_pred ccccccc-cceEEeeccccccccc
Confidence 4455544 6678889999977643
No 159
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.17 E-value=8.5e-10 Score=126.22 Aligned_cols=112 Identities=16% Similarity=0.251 Sum_probs=97.5
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCC-eeEEEECCcCccCCCCCCcCEEEE
Q 003268 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA-IKILICTNIVESGLDIQNANTIIV 568 (835)
Q Consensus 490 ~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~-~~VLVaT~iie~GIDIp~v~~VIi 568 (835)
..|..|++|+.-.+.++-+.++|.-. ++....+.|.....+|..++.+|...+ .-+|++|...+-|||+..+++||.
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~yr--~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF 1119 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVYR--GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF 1119 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHhh--ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE
Confidence 45678888888777788888888777 899999999999999999999999865 446899999999999999999999
Q ss_pred ecCCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003268 569 QDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 569 ~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
||.+ |++.--.|...||.|-| +.-.+|.+++..++
T Consensus 1120 YdSD-WNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1120 YDSD-WNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred ecCC-CCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 9998 79988899999999998 45778999988765
No 160
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.14 E-value=1.1e-09 Score=121.47 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=88.8
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC-Cee-EEEECCcCccCCCCCCcCEEEEec
Q 003268 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 493 gqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g-~~~-VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
-+.+||..-....+-+.-.|.+. |+.++-+-|+|++..|...++.|.+. .+. +||+-...+..+|+..+..|++.|
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~ka--GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKA--GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhcc--CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 45677766555555555556666 89999999999999999999999875 455 478888999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003268 571 VQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
+- |+++--+|...|+.|.| ++-.++.|+-+..+
T Consensus 717 PW-WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 717 PW-WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred cc-ccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 86 79999999999999998 56777888766644
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.11 E-value=8.3e-09 Score=122.62 Aligned_cols=276 Identities=15% Similarity=0.221 Sum_probs=168.8
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
.-.+|-+|+|||||.+.+.++...+ ..+..++++.-++.|+.+.+.+|+.. .+.|.. .+.... +. .+
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~--~l~gFv-~Y~d~~-~~-----~i--- 117 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA--GLSGFV-NYLDSD-DY-----II--- 117 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc--CCCcce-eeeccc-cc-----cc---
Confidence 4468899999999998877776654 45789999999999999999998742 222222 222111 00 01
Q ss_pred hcCCc-ceEecchHhhhcc-cccccccEEEecccccc-----ch--hhHHH----HHh-hcCCceEEEeecCCChhhHHH
Q 003268 383 KHGHL-NIIVGTHSLLGSR-VVYNNLGLLVVDEEQRF-----GV--KQKEK----IAS-FKISVDVLTLSATPIPRTLYL 448 (835)
Q Consensus 383 ~~g~~-dIIIgT~~~L~~~-l~~~~l~lVIIDEaHr~-----g~--~~~e~----l~~-~~~~~~vL~lSATp~p~tl~~ 448 (835)
..... .++|+-+++..-. -.++++++|||||+-.. +. .+.+. +.. ++....+|+|-||....+..+
T Consensus 118 ~~~~~~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 118 DGRPYDRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred cccccCeEEEEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 10012 3455555444322 23578999999998742 11 12111 221 245678999999998877665
Q ss_pred HHhc--CCCcceeeC----------------------------CCCCcc-----------ceeEEecccCHHHHHHHHHH
Q 003268 449 ALTG--FRDASLIST----------------------------PPPERL-----------PIKTHLSAFSKEKVISAIKY 487 (835)
Q Consensus 449 ~~~~--~~d~s~i~~----------------------------~p~~r~-----------~V~~~~~~~~~~~~~~~i~~ 487 (835)
.... -.+..+|.. ++.+-. ...+.....+.......+..
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 4332 112222110 000000 00011111223456778888
Q ss_pred HHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC--E
Q 003268 488 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN--T 565 (835)
Q Consensus 488 ~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~--~ 565 (835)
.+..|.++.||++++.-.+.+++..+.. ..+|..++|.-+..+.+ . =++.+|++=|+++..|+++.... -
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccchhhceE
Confidence 8899999999999999888888888776 67888888876655322 2 25799999999999999997543 3
Q ss_pred EEEe-cCCCC--CHhHHHHHhcccCCCCCceEEEEEec
Q 003268 566 IIVQ-DVQQF--GLAQLYQLRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 566 VIi~-d~p~~--sl~~l~Qr~GRaGR~g~~G~ay~l~~ 600 (835)
|..| ..... +..+.+|+.||+-.-. ....|++++
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 3332 11111 3456899999996543 444554443
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.08 E-value=7.1e-09 Score=128.69 Aligned_cols=316 Identities=19% Similarity=0.263 Sum_probs=203.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHh
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
..++.|+|.+.++++...+. ....+.+++.++|.|||.+.+..+...... .+.+++++|+. +..+|.+++..
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~--~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k- 411 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLR--SNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEK- 411 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHH--hccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhh-
Confidence 34788999999987652221 235678999999999999876655432222 35799999985 56677888854
Q ss_pred hcCCCCcE-EEEecCCCC-HHHHHHHHHhHhcC----CcceEecchHhhhc---cc---ccccccEEEeccccccchhh-
Q 003268 355 FSKYPDIK-VGLLSRFQS-KAEKEEHLDMIKHG----HLNIIVGTHSLLGS---RV---VYNNLGLLVVDEEQRFGVKQ- 421 (835)
Q Consensus 355 f~~~~gi~-V~~l~g~~s-~~e~~~~l~~l~~g----~~dIIIgT~~~L~~---~l---~~~~l~lVIIDEaHr~g~~~- 421 (835)
|.. .++ +...+|... .....+.+..+... ..+++++|.+.+.. +. .-..++.+|+||+|++....
T Consensus 412 ~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s 489 (866)
T COG0553 412 FAP--DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQS 489 (866)
T ss_pred hCc--cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhh
Confidence 554 355 777777554 12122233333322 27999999998876 32 22467899999999963322
Q ss_pred --HHHHHhhcCCceEEEeecCCChhhHHHH--------HhcCCCc-----------------------------------
Q 003268 422 --KEKIASFKISVDVLTLSATPIPRTLYLA--------LTGFRDA----------------------------------- 456 (835)
Q Consensus 422 --~e~l~~~~~~~~vL~lSATp~p~tl~~~--------~~~~~d~----------------------------------- 456 (835)
...+..+ .....+.+|+||+...+... .-++.+.
T Consensus 490 ~~~~~l~~~-~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 568 (866)
T COG0553 490 SEGKALQFL-KALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKL 568 (866)
T ss_pred HHHHHHHHH-hhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHH
Confidence 2223322 23334788888853221100 0000000
Q ss_pred -----------c--ee-eCCCCCccce----------------e--------------E----------E----------
Q 003268 457 -----------S--LI-STPPPERLPI----------------K--------------T----------H---------- 472 (835)
Q Consensus 457 -----------s--~i-~~~p~~r~~V----------------~--------------~----------~---------- 472 (835)
. ++ ..++.....+ . . .
T Consensus 569 i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 648 (866)
T COG0553 569 LSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRL 648 (866)
T ss_pred HHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 0 00 0000000000 0 0 0
Q ss_pred ---------ecc-----c-------------------------CHH-HHHHHH-HHHHhcCC--eEEEEecCccChHHHH
Q 003268 473 ---------LSA-----F-------------------------SKE-KVISAI-KYELDRGG--QVFYVLPRIKGLEEPM 509 (835)
Q Consensus 473 ---------~~~-----~-------------------------~~~-~~~~~i-~~~l~~gg--qvlVf~~~v~~ie~l~ 509 (835)
+.. . .+. .+.+.+ ......+. ++++|.+.....+-+.
T Consensus 649 r~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~ 728 (866)
T COG0553 649 RQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLE 728 (866)
T ss_pred HHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHH
Confidence 000 0 001 111222 23344555 8999999999998899
Q ss_pred HHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC--CeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccC
Q 003268 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG--AIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 510 ~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g--~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaG 587 (835)
..+... ++....++|+++...|...+..|.++ ..-++++|...+.|+|+..+++||.+|.. |+++...|...|+.
T Consensus 729 ~~l~~~--~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~-wnp~~~~Qa~dRa~ 805 (866)
T COG0553 729 DYLKAL--GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPW-WNPAVELQAIDRAH 805 (866)
T ss_pred HHHHhc--CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccc-cChHHHHHHHHHHH
Confidence 999887 57889999999999999999999986 45677888999999999999999999998 79999999999999
Q ss_pred CCCCc--eEEEEEecCCCc
Q 003268 588 RADKE--AHAYLFYPDKSL 604 (835)
Q Consensus 588 R~g~~--G~ay~l~~~~~~ 604 (835)
|.|+. -.+|.+.+.+++
T Consensus 806 RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 806 RIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred HhcCcceeEEEEeecCCcH
Confidence 98854 556777777654
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.04 E-value=1.1e-09 Score=105.87 Aligned_cols=127 Identities=21% Similarity=0.273 Sum_probs=76.8
Q ss_pred CCcEEEEccCCCccHHHHHHHH-HHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAI-FCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~-~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
+.-.+|-..+|+|||.-.+..+ .+++..+.++|||.|||.++..+++.++. .| +++...... .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~----~~-~~~~t~~~~--~--------- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG----LP-VRFHTNARM--R--------- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT----SS-EEEESTTSS------------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc----CC-cccCceeee--c---------
Confidence 4557889999999999765544 45788899999999999999988776643 22 443322221 1
Q ss_pred HhcCCcceEecchHhhh----cccccccccEEEeccccccchhh---HHHHHhh--cCCceEEEeecCCChhh
Q 003268 382 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFGVKQ---KEKIASF--KISVDVLTLSATPIPRT 445 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~----~~l~~~~l~lVIIDEaHr~g~~~---~e~l~~~--~~~~~vL~lSATp~p~t 445 (835)
-..|..-|-+.||+.+. +.....+++++|+||+|-..... +..+..+ .....+|.|||||+-+.
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 01255667788887553 34557899999999999753221 2223222 23468999999997543
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.99 E-value=2.1e-08 Score=119.86 Aligned_cols=123 Identities=23% Similarity=0.206 Sum_probs=94.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.....+...|.-.--.+. ..-+.-.-||=|||+++.+|+.-....|+.|.++...--||.--++.+...+.
T Consensus 76 vlg~~~~dVQliG~i~lh---------~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~ 146 (822)
T COG0653 76 VLGMRHFDVQLLGGIVLH---------LGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYE 146 (822)
T ss_pred hcCCChhhHHHhhhhhhc---------CCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHH
Confidence 345566667766533221 23588999999999999999987777899999999999999888888877555
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh-----c-------ccccccccEEEecccc
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----S-------RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~-----~-------~l~~~~l~lVIIDEaH 415 (835)
. .|++|++...+.+..++...+ .+||..+|...|. + ......+.+.|+||++
T Consensus 147 ~-LGlsvG~~~~~m~~~ek~~aY------~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 147 F-LGLSVGVILAGMSPEEKRAAY------ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred H-cCCceeeccCCCChHHHHHHH------hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 4 489999999999988887776 3899999987662 1 1223467888888888
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.94 E-value=1.1e-07 Score=112.14 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=93.0
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhC--------------------CCCcEEEEcCCCCHHHHHHHHHHhhcCC----e
Q 003268 490 DRGGQVFYVLPRIKGLEEPMDFLQQAF--------------------PGVDIAIAHGQQYSRQLEETMEKFAQGA----I 545 (835)
Q Consensus 490 ~~ggqvlVf~~~v~~ie~l~~~L~~~~--------------------p~~~V~~lHG~m~~~ere~vl~~F~~g~----~ 545 (835)
+-|.++|||..+....+-+..+|.-.- .|.....+.|.....+|+.....|.+-. .
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 457789999999888777776664321 1235677899999999999999998752 4
Q ss_pred eEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003268 546 KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 546 ~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
-.||+|-+.+-|||+-.+|.||++|+. |+++.-.|-+=||.|.| ++-|+|.|+...++
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDas-WNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTm 1279 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDAS-WNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTM 1279 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecc-cCCccchHHHHHHHhhcCcCceeehhhhhcccH
Confidence 479999999999999999999999997 79999999999999999 46777777766654
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.92 E-value=1.1e-08 Score=111.50 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=62.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCC-----EEEEEcccHHHHHHHHHH
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGK-----QAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~-----qvlVLvPtr~La~Q~~~~ 350 (835)
.|||+|+|.|.+.+..+...+.+ +.++++.+|||+|||++++.|++..+. .+. +++|+++|..+..|....
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHH
Confidence 48999999999999999887743 568999999999999999999875433 233 799999999999998877
Q ss_pred HHH
Q 003268 351 VSE 353 (835)
Q Consensus 351 ~~~ 353 (835)
++.
T Consensus 81 l~~ 83 (289)
T smart00488 81 LRK 83 (289)
T ss_pred HHh
Confidence 765
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.92 E-value=1.1e-08 Score=111.50 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=62.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCC-----EEEEEcccHHHHHHHHHH
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGK-----QAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~-----qvlVLvPtr~La~Q~~~~ 350 (835)
.|||+|+|.|.+.+..+...+.+ +.++++.+|||+|||++++.|++..+. .+. +++|+++|..+..|....
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~---~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDR---GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHH
Confidence 48999999999999999887743 568999999999999999999875433 233 799999999999998877
Q ss_pred HHH
Q 003268 351 VSE 353 (835)
Q Consensus 351 ~~~ 353 (835)
++.
T Consensus 81 l~~ 83 (289)
T smart00489 81 LRK 83 (289)
T ss_pred HHh
Confidence 765
No 168
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.89 E-value=4.1e-08 Score=122.42 Aligned_cols=134 Identities=21% Similarity=0.216 Sum_probs=89.6
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
.+..-+|+--+|||||+..+..+-... ...+.|+|+|-++.|-.|+.++|.. |+... .... ...+..+-.+.+
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~~~-~~~~---~~~s~~~Lk~~l 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQS-FGKVA-FNDP---KAESTSELKELL 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHH-HHHhh-hhcc---cccCHHHHHHHH
Confidence 346789999999999998665554433 3468999999999999999999987 54321 1111 333444444443
Q ss_pred HhHhcCCcceEecchHhhhcccc------c-ccccEEEecccccc--chhhHHHHHhhcCCceEEEeecCCChh
Q 003268 380 DMIKHGHLNIIVGTHSLLGSRVV------Y-NNLGLLVVDEEQRF--GVKQKEKIASFKISVDVLTLSATPIPR 444 (835)
Q Consensus 380 ~~l~~g~~dIIIgT~~~L~~~l~------~-~~l~lVIIDEaHr~--g~~~~e~l~~~~~~~~vL~lSATp~p~ 444 (835)
..+.-.|||+|-+.+...+. . ++-=+||+|||||. |..+.. +....++...+++|+||+-.
T Consensus 347 ---~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~-~~~~~~~a~~~gFTGTPi~~ 416 (962)
T COG0610 347 ---EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKL-LKKALKKAIFIGFTGTPIFK 416 (962)
T ss_pred ---hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHH-HHHHhccceEEEeeCCcccc
Confidence 33445799999876653221 1 22236899999995 443332 34444668899999999643
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.51 E-value=1.4e-06 Score=93.51 Aligned_cols=130 Identities=23% Similarity=0.259 Sum_probs=96.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~ 351 (835)
+.......+.|++.|.-++-.+. ...|+...||=|||+++.+++......|+.|-|++..-.||..-++.+
T Consensus 68 ea~~r~~g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 68 EAARRTLGLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp HHHHHHTS----HHHHHHHHHHH---------TTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHH
T ss_pred HHHHHHcCCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHH
Confidence 34455778899999999976553 234999999999999987777766778999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh-----ccc-------ccccccEEEecccccc
Q 003268 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SRV-------VYNNLGLLVVDEEQRF 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~-----~~l-------~~~~l~lVIIDEaHr~ 417 (835)
...|..+ |++|++.....+..++.+.+ .+||++||.+-+. +.+ ..+.+.++||||+|.+
T Consensus 139 ~~~y~~L-Glsv~~~~~~~~~~~r~~~Y------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 139 RPFYEFL-GLSVGIITSDMSSEERREAY------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHHHHHT-T--EEEEETTTEHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHHHHh-hhccccCccccCHHHHHHHH------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 9877765 89999999988776665555 3789999987553 111 1367899999999964
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.39 E-value=4.5e-06 Score=102.33 Aligned_cols=164 Identities=20% Similarity=0.304 Sum_probs=102.6
Q ss_pred CCCCCHHHHHHHHHHHHhhhcC-------------------------------CCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 279 PYEPTPDQKKAFLDVERDLTER-------------------------------ETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~-------------------------------~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
-|+--|+|.+|+.+|+.-+..- ....++.+.++||+|||.+|+..++..
T Consensus 4 ~~e~l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l 83 (986)
T PRK15483 4 LLEELPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYEL 83 (986)
T ss_pred ccccChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3444789999999888644221 112589999999999999999998876
Q ss_pred HhC-C-CEEEEEcccHHHHHHHHHHHH-----HhhcC-CCC--cEEEEecCCCC-HHHH---HHHHHhHhcC------Cc
Q 003268 328 VSA-G-KQAMVLAPTIVLAKQHFDVVS-----ERFSK-YPD--IKVGLLSRFQS-KAEK---EEHLDMIKHG------HL 387 (835)
Q Consensus 328 ~~~-g-~qvlVLvPtr~La~Q~~~~~~-----~~f~~-~~g--i~V~~l~g~~s-~~e~---~~~l~~l~~g------~~ 387 (835)
... | ..++|+||+.++-..+...+. ..|.. +.+ ++..++.+... ...+ ...+.....+ .+
T Consensus 84 ~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I 163 (986)
T PRK15483 84 HQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTI 163 (986)
T ss_pred HHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCce
Confidence 544 3 578999999887776665443 33332 222 44445554320 0000 1122222222 58
Q ss_pred ceEecchHhhhcccc----------------cccc----cEEEeccccccc--hhhHHHHHhhcCCceEEEeecCCCh
Q 003268 388 NIIVGTHSLLGSRVV----------------YNNL----GLLVVDEEQRFG--VKQKEKIASFKISVDVLTLSATPIP 443 (835)
Q Consensus 388 dIIIgT~~~L~~~l~----------------~~~l----~lVIIDEaHr~g--~~~~e~l~~~~~~~~vL~lSATp~p 443 (835)
.|+|.|-+++.+... +..+ -+||+||.|+|. ...++.+..+.+ .-+|.+|||...
T Consensus 164 ~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~k~~~~i~~lnp-l~~lrysAT~~~ 240 (986)
T PRK15483 164 HVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDNKFYQAIEALKP-QMIIRFGATFPD 240 (986)
T ss_pred EEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcchHHHHHHHhcCc-ccEEEEeeecCC
Confidence 999999988865321 1111 259999999993 345666766644 346779999754
No 171
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.21 E-value=5.3e-06 Score=100.01 Aligned_cols=156 Identities=19% Similarity=0.281 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH-HhCC--CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAG--KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~-~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
.++.+|...++++.. |. .+.-|-|+....|.|||.+-+..+... ...| +.-||+|||-.+.+ |.-+|+. |+
T Consensus 615 qLReYQkiGLdWLat-LY--eknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKR-wc- 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLAT-LY--EKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKR-WC- 688 (1958)
T ss_pred HHHHHHHhhHHHHHH-HH--HhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhh-hC-
Confidence 678999999998765 33 335678999999999999854332222 2222 56799999987764 5666764 54
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhH-hcCCcceEecchHhhhcc---cccccccEEEecccccc-ch--hhHHHHHhhcC
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMI-KHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRF-GV--KQKEKIASFKI 430 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l-~~g~~dIIIgT~~~L~~~---l~~~~l~lVIIDEaHr~-g~--~~~e~l~~~~~ 430 (835)
||++|..++|. ..+++...+.- +-..++|.|+++.++..+ +.-++|.|+|+||+|++ ++ ..++.+..+.
T Consensus 689 -PglKILTYyGs--~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfn- 764 (1958)
T KOG0391|consen 689 -PGLKILTYYGS--HKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFN- 764 (1958)
T ss_pred -CcceEeeecCC--HHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccc-
Confidence 58999988884 34433332221 223578999999888754 33478999999999986 33 3455565553
Q ss_pred CceEEEeecCCChhhH
Q 003268 431 SVDVLTLSATPIPRTL 446 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl 446 (835)
..+.|++++||..+++
T Consensus 765 sqrRLLLtgTPLqNsl 780 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSL 780 (1958)
T ss_pred hhheeeecCCchhhHH
Confidence 4466789999977654
No 172
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.21 E-value=0.00022 Score=81.47 Aligned_cols=214 Identities=12% Similarity=0.182 Sum_probs=136.2
Q ss_pred CcceEecchHhhhc----------cc-ccccccEEEeccccccchhhHHHHHh----h----------------------
Q 003268 386 HLNIIVGTHSLLGS----------RV-VYNNLGLLVVDEEQRFGVKQKEKIAS----F---------------------- 428 (835)
Q Consensus 386 ~~dIIIgT~~~L~~----------~l-~~~~l~lVIIDEaHr~g~~~~e~l~~----~---------------------- 428 (835)
..||||++|=-|.. +. .++.+.++|||.+|-+....++.+.. +
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 46999999965531 12 24788999999999764333322211 0
Q ss_pred --cCCceEEEeecCCChhhHHHHHhcCCCcc-e--eeCCCC-------CccceeEEeccc-------CHHHH----HHHH
Q 003268 429 --KISVDVLTLSATPIPRTLYLALTGFRDAS-L--ISTPPP-------ERLPIKTHLSAF-------SKEKV----ISAI 485 (835)
Q Consensus 429 --~~~~~vL~lSATp~p~tl~~~~~~~~d~s-~--i~~~p~-------~r~~V~~~~~~~-------~~~~~----~~~i 485 (835)
+.-.|+|++|+...|....+......+.. . +..+.. ...++.+....+ ..+.. ...+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 12478999999999987766655333221 1 111111 011222222111 11111 1222
Q ss_pred HHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcC--ccCCCC
Q 003268 486 KYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV--ESGLDI 560 (835)
Q Consensus 486 ~~~l~---~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~ii--e~GIDI 560 (835)
.-.+. ..+.++||+|+=-+--++-++|++. ++..+.+|=-.+..+...+-..|..|+.+||+.|-=+ =+=..|
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~--~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE--NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhc--CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 22222 3478999999988878888889876 8888888888888888899999999999999999732 234557
Q ss_pred CCcCEEEEecCCCCCHhHHHHHhcccCCCC------CceEEEEEecCC
Q 003268 561 QNANTIIVQDVQQFGLAQLYQLRGRVGRAD------KEAHAYLFYPDK 602 (835)
Q Consensus 561 p~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g------~~G~ay~l~~~~ 602 (835)
.++++||.|.+|. .+.-|...+.-.+... ..+.|.++|+.-
T Consensus 369 rGi~~viFY~~P~-~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 369 RGIRHVIFYGPPE-NPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred cCCcEEEEECCCC-ChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 7899999999997 4544444444443332 357889998765
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.19 E-value=6.1e-06 Score=85.51 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCc-EEEEccCCCccHHHHHHHHHHH--------HhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 282 PTPDQKKAFLDVERDLTERETPMD-RLICGDVGFGKTEVALRAIFCV--------VSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d-~LI~g~TGsGKT~val~a~~~~--------~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+++.|.+|+..++. ... .+|.||.|+|||.+....+... ...+.++++++|+...+.++.+.+.
T Consensus 2 ln~~Q~~Ai~~~~~-------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 2 LNESQREAIQSALS-------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp --HHHHHHHHHHCT-------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 67899999987753 234 8999999999997655444444 4567899999999999999999987
Q ss_pred H
Q 003268 353 E 353 (835)
Q Consensus 353 ~ 353 (835)
+
T Consensus 75 ~ 75 (236)
T PF13086_consen 75 K 75 (236)
T ss_dssp C
T ss_pred h
Confidence 6
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.16 E-value=1.5e-05 Score=82.15 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~g 360 (835)
+|++.|.+|+..++.. ...-.+|+|+.|+|||.+.-.........+.++++++||...+..+.+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~-----~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~--------~ 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS-----GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT--------G 67 (196)
T ss_dssp -S-HHHHHHHHHHHHC-----TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH--------T
T ss_pred CCCHHHHHHHHHHHhc-----CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh--------C
Confidence 4789999999998751 12457889999999998643322223345789999999998887754442 2
Q ss_pred cEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhc-C-CceEEEe
Q 003268 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK-I-SVDVLTL 437 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~-~-~~~vL~l 437 (835)
+.+..++++..... .+ - ......+.+.++|||||+-.++......+.... . +.++|++
T Consensus 68 ~~a~Ti~~~l~~~~---------~~----~------~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilv 127 (196)
T PF13604_consen 68 IEAQTIHSFLYRIP---------NG----D------DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILV 127 (196)
T ss_dssp S-EEEHHHHTTEEC---------CE----E------CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEE
T ss_pred cchhhHHHHHhcCC---------cc----c------ccccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEE
Confidence 34444433211000 00 0 000011556679999999999887776665543 2 4555544
No 175
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.97 E-value=3.7e-05 Score=93.02 Aligned_cols=117 Identities=19% Similarity=0.275 Sum_probs=97.6
Q ss_pred HHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCC--eeEEEECCcCccCCCCCCc
Q 003268 486 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKILICTNIVESGLDIQNA 563 (835)
Q Consensus 486 ~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~--~~VLVaT~iie~GIDIp~v 563 (835)
.+.-..|.++|||..-.+..+-+..+|.-+ |+....+.|..+-++|+..|++|+... ..+|++|-..+.|||+.++
T Consensus 1270 qQLk~eghRvLIfTQMtkmLDVLeqFLnyH--gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgA 1347 (1958)
T KOG0391|consen 1270 QQLKSEGHRVLIFTQMTKMLDVLEQFLNYH--GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGA 1347 (1958)
T ss_pred HHHHhcCceEEehhHHHHHHHHHHHHHhhc--ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccC
Confidence 334467889999999888888888888777 889999999999999999999999764 4568899999999999999
Q ss_pred CEEEEecCCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCcC
Q 003268 564 NTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSLL 605 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~~ 605 (835)
++||.||.+ ||+.---|.--|+.|.| +.-..|.|+++..+.
T Consensus 1348 DTVvFYDsD-wNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1348 DTVVFYDSD-WNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred ceEEEecCC-CCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 999999998 78866566666666655 568889999988764
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.89 E-value=3.1e-05 Score=80.16 Aligned_cols=135 Identities=19% Similarity=0.295 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
..|+.|..+++.++. ..-+++.||.|+|||..++.+++..+.++ .+++|+-|...... .++-.
T Consensus 4 p~~~~Q~~~~~al~~-------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~--------~lGfl 68 (205)
T PF02562_consen 4 PKNEEQKFALDALLN-------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE--------DLGFL 68 (205)
T ss_dssp --SHHHHHHHHHHHH--------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT------------SS
T ss_pred CCCHHHHHHHHHHHh-------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc--------ccccC
Confidence 357899999999873 24688899999999999999998888776 47888888764311 12222
Q ss_pred CCcEEEEe-----------cCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHH-HH
Q 003268 359 PDIKVGLL-----------SRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEK-IA 426 (835)
Q Consensus 359 ~gi~V~~l-----------~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~-l~ 426 (835)
||-.-.-+ .........+ ..+.+| .|-+..+..+.. -.|++ .+|||||||.+...+... +.
T Consensus 69 pG~~~eK~~p~~~p~~d~l~~~~~~~~~~---~~~~~~--~Ie~~~~~~iRG-rt~~~-~~iIvDEaQN~t~~~~k~ilT 141 (205)
T PF02562_consen 69 PGDLEEKMEPYLRPIYDALEELFGKEKLE---ELIQNG--KIEIEPLAFIRG-RTFDN-AFIIVDEAQNLTPEELKMILT 141 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHH---HHHHTT--SEEEEEGGGGTT---B-S-EEEEE-SGGG--HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhChHhHH---HHhhcC--eEEEEehhhhcC-ccccc-eEEEEecccCCCHHHHHHHHc
Confidence 22110000 0000001111 112223 455555555543 23443 899999999998766544 55
Q ss_pred hhcCCceEEEe
Q 003268 427 SFKISVDVLTL 437 (835)
Q Consensus 427 ~~~~~~~vL~l 437 (835)
+...+.+++++
T Consensus 142 R~g~~skii~~ 152 (205)
T PF02562_consen 142 RIGEGSKIIIT 152 (205)
T ss_dssp TB-TT-EEEEE
T ss_pred ccCCCcEEEEe
Confidence 66677777654
No 177
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.79 E-value=0.00013 Score=84.48 Aligned_cols=73 Identities=23% Similarity=0.191 Sum_probs=60.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 274 ~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
....++..+.+-|.+|+..... . ..-.++.||+|+|||.+....+.+.+..+++|||.+||.+-+..+.+++.
T Consensus 178 ~~~~~~~~ln~SQk~Av~~~~~-----~-k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 178 KITFFNKNLNSSQKAAVSFAIN-----N-KDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccCCccccHHHHHHHHHHhc-----c-CCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3345667889999999887653 1 14578899999999999888888899999999999999999888888654
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.76 E-value=0.00025 Score=85.60 Aligned_cols=68 Identities=24% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..+++.|..|+..++. . ....+|.||+|+|||.+....+...+..|.+|++++||...+.++.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~---~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---S---KDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---C---CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4789999999988753 1 246899999999999887766667777889999999999999999988876
No 179
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.73 E-value=8.3e-05 Score=83.56 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=42.7
Q ss_pred cEEEEccCCCccHHHHHHHHHHH--HhCCCEEEEEcccHHHHHHHHHHHHHh
Q 003268 305 DRLICGDVGFGKTEVALRAIFCV--VSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~--~~~g~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
-++|.|..|||||++++..+... ...+..++++++...|...+.+.+...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhh
Confidence 47899999999999988777766 567889999999999999888887653
No 180
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.64 E-value=0.00013 Score=88.54 Aligned_cols=125 Identities=27% Similarity=0.267 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~La~Q~~~~~~~~f~~~~ 359 (835)
..|.|.+.+..+. ....+.++-+|||+|||.+|..+++..... +.++++++|-.+|+..-.+.+..++...
T Consensus 928 fn~~q~~if~~~y------~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~- 1000 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLY------HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP- 1000 (1230)
T ss_pred cCCccceEEEEEe------ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-
Confidence 3456655543322 224578899999999999999999988764 5799999999999999888888876554
Q ss_pred CcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-------cccccccEEEeccccccchh
Q 003268 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 360 gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-------l~~~~l~lVIIDEaHr~g~~ 420 (835)
|+++.-++|...++- ..+ .+.+|+|+||...... -.+.+++++|+||.|..|..
T Consensus 1001 g~k~ie~tgd~~pd~-----~~v--~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDV-----KAV--READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred CceeEeccCccCCCh-----hhe--ecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 899999999876652 112 2479999999876432 23678999999999987654
No 181
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.63 E-value=0.0009 Score=82.00 Aligned_cols=134 Identities=23% Similarity=0.239 Sum_probs=80.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CC--CEEEEEcccHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AG--KQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g--~qvlVLvPtr~La~Q 346 (835)
....++....+.+++.|++|+..+.. ..-.+|.|+.|+|||.+. ..++..+. .+ ..+++++||-..|..
T Consensus 312 ~i~~~~~~~~~~l~~~Q~~Ai~~~~~-------~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 312 HIWEVEKKLRKGLSEEQKQALDTAIQ-------HKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHh-------CCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 44566777888999999999998753 246899999999999874 23333322 34 678999999887764
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHH-
Q 003268 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI- 425 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l- 425 (835)
+.+. . |.....+++. +.. + .+-. ... ..-.....++|||||++.++......+
T Consensus 384 L~e~----~----g~~a~Tih~l---------L~~---~-~~~~--~~~---~~~~~~~~~llIvDEaSMvd~~~~~~Ll 437 (720)
T TIGR01448 384 LGEV----T----GLTASTIHRL---------LGY---G-PDTF--RHN---HLEDPIDCDLLIVDESSMMDTWLALSLL 437 (720)
T ss_pred HHHh----c----CCccccHHHH---------hhc---c-CCcc--chh---hhhccccCCEEEEeccccCCHHHHHHHH
Confidence 3322 1 2222222221 100 0 0000 000 001124578999999999987655444
Q ss_pred HhhcCCceEEEe
Q 003268 426 ASFKISVDVLTL 437 (835)
Q Consensus 426 ~~~~~~~~vL~l 437 (835)
...+.+.++|++
T Consensus 438 ~~~~~~~rlilv 449 (720)
T TIGR01448 438 AALPDHARLLLV 449 (720)
T ss_pred HhCCCCCEEEEE
Confidence 445556676664
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.55 E-value=0.0029 Score=67.68 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
....+..|..++..+.+ ...+++.|++|+|||..++..+...+.++ .+++|.-|+..... .++
T Consensus 57 i~p~n~~Q~~~l~al~~-------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge--------~LG 121 (262)
T PRK10536 57 ILARNEAQAHYLKAIES-------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADE--------DLG 121 (262)
T ss_pred ccCCCHHHHHHHHHHhc-------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchh--------hhC
Confidence 34568888888887642 24788899999999999887777655333 34555556543211 121
Q ss_pred CCCCcE---EEE--------ecCCCCHHHHHHHHHhHh-cCCcceEecchHhhhcccccccccEEEeccccccchhhHH-
Q 003268 357 KYPDIK---VGL--------LSRFQSKAEKEEHLDMIK-HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKE- 423 (835)
Q Consensus 357 ~~~gi~---V~~--------l~g~~s~~e~~~~l~~l~-~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e- 423 (835)
-.||-. +.. +....... .++.+. ...-.|-|.....+... .|.+ ++|||||+|.+...+..
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~~~~~----~~~~~~~~~~~~Iei~~l~ymRGr-tl~~-~~vIvDEaqn~~~~~~k~ 195 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRRLGAS----FMQYCLRPEIGKVEIAPFAYMRGR-TFEN-AVVILDEAQNVTAAQMKM 195 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChH----HHHHHHHhccCcEEEecHHHhcCC-cccC-CEEEEechhcCCHHHHHH
Confidence 122210 000 00000000 111111 11123555555555432 3433 89999999999876544
Q ss_pred HHHhhcCCceEEE
Q 003268 424 KIASFKISVDVLT 436 (835)
Q Consensus 424 ~l~~~~~~~~vL~ 436 (835)
.+.+...+.++|+
T Consensus 196 ~ltR~g~~sk~v~ 208 (262)
T PRK10536 196 FLTRLGENVTVIV 208 (262)
T ss_pred HHhhcCCCCEEEE
Confidence 4566666777654
No 183
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.49 E-value=0.00062 Score=73.90 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHHHhhh---cCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCC-EEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLT---ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~---~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~-qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.++..|.+++--..+... ......-+++-..||.||--+..-.++....+|. +++++..+..|-....+.+++ ++
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D-IG 115 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD-IG 115 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH-hC
Confidence 478999998765443211 1233567889999999999887666666666664 699999999999998888887 55
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc--------------ccc--cc-ccEEEeccccccch
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--------------VVY--NN-LGLLVVDEEQRFGV 419 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~--------------l~~--~~-l~lVIIDEaHr~g~ 419 (835)
.. .+.+..+........ ..+.. .|+++|++.|... +.| .+ =++||+||+|....
T Consensus 116 ~~-~i~v~~l~~~~~~~~-----~~~~~---GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 116 AD-NIPVHPLNKFKYGDI-----IRLKE---GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred CC-cccceechhhccCcC-----CCCCC---CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCC
Confidence 44 355655554321111 12233 4999999887532 111 12 26899999998622
Q ss_pred ---------hh---HHHHHhhcCCceEEEeecCCChh
Q 003268 420 ---------KQ---KEKIASFKISVDVLTLSATPIPR 444 (835)
Q Consensus 420 ---------~~---~e~l~~~~~~~~vL~lSATp~p~ 444 (835)
++ .-.|...-++.++|.+|||....
T Consensus 187 ~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase 223 (303)
T PF13872_consen 187 LSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE 223 (303)
T ss_pred CCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC
Confidence 11 11234445788999999997443
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.46 E-value=0.00075 Score=70.80 Aligned_cols=118 Identities=17% Similarity=0.213 Sum_probs=80.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEE-EEcccHHHHHHHHHHHH
Q 003268 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAM-VLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 274 ~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvl-VLvPtr~La~Q~~~~~~ 352 (835)
|+-....-.+|.|.+...++.+ .+.+.+.+.+.-+|.|||.|.+..+...+.+|.+.+ ++|| +.|..|.++.+.
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~----~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~ 90 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMIS----PPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLR 90 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhC----CCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHH
Confidence 4444566789999998877764 345789999999999999998776666777776555 5555 579999999999
Q ss_pred HhhcCCCCcEEEE--ecCCCCHH--H---HHHHHHhH-hcCCcceEecchHhhh
Q 003268 353 ERFSKYPDIKVGL--LSRFQSKA--E---KEEHLDMI-KHGHLNIIVGTHSLLG 398 (835)
Q Consensus 353 ~~f~~~~gi~V~~--l~g~~s~~--e---~~~~l~~l-~~g~~dIIIgT~~~L~ 398 (835)
.+|+...+-+|.. +++..... . ....++.+ .+| .|+++||+.+.
T Consensus 91 ~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~--gill~~PEhil 142 (229)
T PF12340_consen 91 SRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSG--GILLATPEHIL 142 (229)
T ss_pred HHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcC--CEEEeChHHHH
Confidence 9998764444443 34443322 1 11222222 233 59999997653
No 185
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.41 E-value=0.001 Score=62.97 Aligned_cols=114 Identities=22% Similarity=0.133 Sum_probs=56.0
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHh------CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE 376 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~------~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~ 376 (835)
..-++|+|++|+|||.++-..+..... ....+.+-+|...-...++..+...++... .. ..+..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~------~~~~~~l- 75 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL-KS------RQTSDEL- 75 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS-SS------TS-HHHH-
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc-cc------cCCHHHH-
Confidence 356899999999999886555443322 223344445544434455555555444321 11 1111111
Q ss_pred HHHHhHhcCCcceEecchHhhhcccccccccEEEecccccc-chhhHHHHHhhcC-CceEEEeecCC
Q 003268 377 EHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF-GVKQKEKIASFKI-SVDVLTLSATP 441 (835)
Q Consensus 377 ~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~-g~~~~e~l~~~~~-~~~vL~lSATp 441 (835)
+. .+.+.+.-....+|||||+|++ .....+.++.+.. ..-.+++++||
T Consensus 76 --~~---------------~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 --RS---------------LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp --HH---------------HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred --HH---------------HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 11 1111111112268999999998 6555556655532 22245567776
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.39 E-value=0.0039 Score=74.60 Aligned_cols=129 Identities=24% Similarity=0.187 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH--HHHHHHHHhC---CCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va--l~a~~~~~~~---g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
.+.|+.|+..++. ..-.+|.|+.|+|||.+. ++.++..... +.++++++||---|..+.+.+...+..
T Consensus 147 ~~~Qk~A~~~al~-------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~ 219 (586)
T TIGR01447 147 QNWQKVAVALALK-------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKN 219 (586)
T ss_pred cHHHHHHHHHHhh-------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcc
Confidence 4789999887764 256899999999999974 3333332222 157999999998888877766543322
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecc-hHhhh----------cccccccccEEEeccccccchhhHHH-H
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLG----------SRVVYNNLGLLVVDEEQRFGVKQKEK-I 425 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT-~~~L~----------~~l~~~~l~lVIIDEaHr~g~~~~e~-l 425 (835)
++ .. .. ... ...+-..| |++|. +.-....+++|||||+-......... +
T Consensus 220 l~-~~---------~~----~~~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll 280 (586)
T TIGR01447 220 LA-AA---------EA----LIA-----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLL 280 (586)
T ss_pred cc-cc---------hh----hhh-----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHH
Confidence 21 10 00 000 01111222 12221 11122357899999999987765544 4
Q ss_pred HhhcCCceEEEe
Q 003268 426 ASFKISVDVLTL 437 (835)
Q Consensus 426 ~~~~~~~~vL~l 437 (835)
...+.+.++|++
T Consensus 281 ~al~~~~rlIlv 292 (586)
T TIGR01447 281 KALPPNTKLILL 292 (586)
T ss_pred HhcCCCCEEEEE
Confidence 445666776654
No 187
>PF13245 AAA_19: Part of AAA domain
Probab=97.39 E-value=0.00042 Score=60.50 Aligned_cols=47 Identities=32% Similarity=0.362 Sum_probs=39.0
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~ 351 (835)
-++|.||.|||||..++..+...+.. +.+++|++||+..+.++.+++
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 36669999999998877777666644 789999999999999877776
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.35 E-value=0.0058 Score=73.42 Aligned_cols=143 Identities=23% Similarity=0.207 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH--HHHHHHHHhC--CCEEEEEcccHHH
Q 003268 270 AIAEFAAQFPYE--PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSA--GKQAMVLAPTIVL 343 (835)
Q Consensus 270 ~~~~~~~~~~~~--~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va--l~a~~~~~~~--g~qvlVLvPtr~L 343 (835)
+...+...|+.. ..+.|+.|+...+. ..-.+|.|++|+|||.+. ++..+..... ...+++++||.--
T Consensus 139 ~~~~l~~lf~~~~~~~d~Qk~Av~~a~~-------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkA 211 (615)
T PRK10875 139 LRQTLDALFGPVTDEVDWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKA 211 (615)
T ss_pred HHHHHHHhcCcCCCCCHHHHHHHHHHhc-------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHH
Confidence 556666666553 46899999876653 256899999999999874 3333322222 3578899999998
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecc-hHhhhc----------ccccccccEEEec
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLGS----------RVVYNNLGLLVVD 412 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT-~~~L~~----------~l~~~~l~lVIID 412 (835)
|..+.+.+.......+ .. ...+ . ....-..| |.+|.. .-..-.+++||||
T Consensus 212 A~rL~e~~~~~~~~~~-~~---------~~~~----~-----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvD 272 (615)
T PRK10875 212 AARLTESLGKALRQLP-LT---------DEQK----K-----RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVD 272 (615)
T ss_pred HHHHHHHHHhhhhccc-cc---------hhhh----h-----cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEC
Confidence 8888877765433321 10 0000 0 00011122 222211 0112246899999
Q ss_pred cccccchhhHHH-HHhhcCCceEEEee
Q 003268 413 EEQRFGVKQKEK-IASFKISVDVLTLS 438 (835)
Q Consensus 413 EaHr~g~~~~e~-l~~~~~~~~vL~lS 438 (835)
|+-......... +..++++.++|++-
T Consensus 273 EaSMvd~~lm~~ll~al~~~~rlIlvG 299 (615)
T PRK10875 273 EASMVDLPMMARLIDALPPHARVIFLG 299 (615)
T ss_pred hHhcccHHHHHHHHHhcccCCEEEEec
Confidence 999987755443 45566677776653
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.31 E-value=0.00033 Score=70.33 Aligned_cols=109 Identities=21% Similarity=0.356 Sum_probs=72.1
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC--cCccCCCCCC--cC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN--IVESGLDIQN--AN 564 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~--iie~GIDIp~--v~ 564 (835)
.+|.++||+++-+.++.+.+.+..... ++.+.. . +....+.+++.|.+++-.||+|+. .+..|||+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 358999999999999999988876532 233322 2 245788999999999999999999 9999999996 77
Q ss_pred EEEEecCCCCCH-----------------------------hHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 565 TIIVQDVQQFGL-----------------------------AQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 565 ~VIi~d~p~~sl-----------------------------~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.||+...|--++ ..+.|.+||+=|... -++.++.-+..+
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~-D~g~i~llD~R~ 151 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSED-DYGVIILLDSRF 151 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT--EEEEEEESGGG
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccC-CcEEEEEEcCcc
Confidence 899988772111 134599999999864 344443333333
No 190
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.23 E-value=0.0017 Score=75.77 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=62.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~~~ 350 (835)
..|.....-.++.-|..|+..++. .---||+||.|+|||.+....++..+.. +.+|||.+|..+.+.|+++.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~-------rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHc-------CCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHH
Confidence 344444445889999999999985 1246999999999999865555544433 57899999999999999998
Q ss_pred HHHhhcCCCCcEEEEec
Q 003268 351 VSERFSKYPDIKVGLLS 367 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~ 367 (835)
+.+- |++|.-+.
T Consensus 474 Ih~t-----gLKVvRl~ 485 (935)
T KOG1802|consen 474 IHKT-----GLKVVRLC 485 (935)
T ss_pred HHhc-----CceEeeee
Confidence 8762 56665443
No 191
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.21 E-value=0.0084 Score=73.91 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
..+.+++.|.+|+..++. + ..-.+|.|+.|+|||.+. .++...+ ..|..+++++||-..|..+.+. .
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~----s--~~~~il~G~aGTGKTtll-~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~----~- 416 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTG----S--GDIAVVVGRAGTGKSTML-KAAREAWEAAGYRVIGAALSGKAAEGLQAE----S- 416 (744)
T ss_pred ccCCCCHHHHHHHHHHhc----C--CCEEEEEecCCCCHHHHH-HHHHHHHHhCCCeEEEEeCcHHHHHHHHhc----c-
Confidence 346799999999998863 1 245789999999999764 3333333 3588999999998766654321 1
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh--cCCceE
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDV 434 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~--~~~~~v 434 (835)
|+....+++. +.....+ ...+...++|||||+-.++......+... ..+.++
T Consensus 417 ---g~~a~Ti~~~---------~~~~~~~--------------~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 417 ---GIESRTLASL---------EYAWANG--------------RDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKV 470 (744)
T ss_pred ---CCceeeHHHH---------HhhhccC--------------cccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEE
Confidence 2332222221 0000111 11245778999999999887665554432 345666
Q ss_pred EEee
Q 003268 435 LTLS 438 (835)
Q Consensus 435 L~lS 438 (835)
|++-
T Consensus 471 iLVG 474 (744)
T TIGR02768 471 VLVG 474 (744)
T ss_pred EEEC
Confidence 5543
No 192
>PRK04296 thymidine kinase; Provisional
Probab=97.17 E-value=0.00074 Score=69.26 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=31.1
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
+-.++.||+|+|||..++..+......+.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 457899999999999998888877778899998877
No 193
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.11 E-value=0.00095 Score=72.54 Aligned_cols=67 Identities=22% Similarity=0.265 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC----CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g----~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
+|+.|.++|.. . ..+++|.|..|||||.+.+.-+...+..+ .+++++++|+..|..+.+++...+..
T Consensus 1 l~~eQ~~~i~~-~--------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS-T--------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C--------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 58999999765 2 36799999999999999877666655443 58999999999999999998876543
No 194
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=97.10 E-value=0.022 Score=70.20 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.|+|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++|+++-|+..|..+.+++.+.++
T Consensus 4 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT---------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC---------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5899999997532 2468999999999999987766666543 24799999999999999999987655
Q ss_pred C-CCCcEEEEecC
Q 003268 357 K-YPDIKVGLLSR 368 (835)
Q Consensus 357 ~-~~gi~V~~l~g 368 (835)
. ..++.|+.+|+
T Consensus 75 ~~~~~~~i~TFHs 87 (726)
T TIGR01073 75 PVAEDIWISTFHS 87 (726)
T ss_pred cccCCcEEEcHHH
Confidence 3 22456666554
No 195
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.07 E-value=0.024 Score=76.38 Aligned_cols=235 Identities=14% Similarity=0.157 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
.+.+++.|.+|+..++.. ...-.+|.|+.|+|||.+. .++...+ ..|.+|++++||-.-+.++.+...
T Consensus 427 ~~~Ls~~Q~~Av~~il~s-----~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g----- 495 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTS-----TKRFIIINGFGGTGSTEIA-QLLLHLASEQGYEIQIITAGSLSAQELRQKIP----- 495 (1960)
T ss_pred cCCCCHHHHHHHHHHHhC-----CCCeEEEEECCCCCHHHHH-HHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhc-----
Confidence 468999999999988752 2356889999999999863 3333333 358899999999887766544321
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecc-hHhhhcccccccccEEEeccccccchhhHHHHHh-h-cCCceE
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT-HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS-F-KISVDV 434 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT-~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~-~-~~~~~v 434 (835)
+....++ .++..+..+ .-..| .+.+....++..-++|||||+-.++......|.. . ..+.++
T Consensus 496 ---~~A~Ti~---------~~l~~l~~~---~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garv 560 (1960)
T TIGR02760 496 ---RLASTFI---------TWVKNLFND---DQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKL 560 (1960)
T ss_pred ---chhhhHH---------HHHHhhccc---ccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEE
Confidence 1111111 111111111 01111 1222223345677899999999998877666654 2 467888
Q ss_pred EEeecCC------ChhhHHHHHhcCCCcceeeCCC--CCccceeEEeccc-CHH---HHHHHHHHHHhcCCeEEEEecCc
Q 003268 435 LTLSATP------IPRTLYLALTGFRDASLISTPP--PERLPIKTHLSAF-SKE---KVISAIKYELDRGGQVFYVLPRI 502 (835)
Q Consensus 435 L~lSATp------~p~tl~~~~~~~~d~s~i~~~p--~~r~~V~~~~~~~-~~~---~~~~~i~~~l~~ggqvlVf~~~v 502 (835)
|++-=+- .-..+...... .+..+.... ..+.++ .+... +.. .+.+..........+++++.++.
T Consensus 561 VlvGD~~QL~sV~aG~~f~~L~~~--gv~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~ 636 (1960)
T TIGR02760 561 ILLNDSAQRQGMSAGSAIDLLKEG--GVTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTH 636 (1960)
T ss_pred EEEcChhhcCccccchHHHHHHHC--CCcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcCCc
Confidence 8765441 11222222221 122222111 111222 12222 222 23333333333444688888888
Q ss_pred cChHHHHHHHHhhC--------CCCcEEEEc-CCCCHHHHHHHHHHhhcCC
Q 003268 503 KGLEEPMDFLQQAF--------PGVDIAIAH-GQQYSRQLEETMEKFAQGA 544 (835)
Q Consensus 503 ~~ie~l~~~L~~~~--------p~~~V~~lH-G~m~~~ere~vl~~F~~g~ 544 (835)
++...+...++..+ ++..+..+. ..|+..++... ..|+.|.
T Consensus 637 ~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 637 REQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred HHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 88777777766543 123333333 34666666533 5555543
No 196
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.06 E-value=0.007 Score=64.87 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
.|-+++.+.+++..+...+. ..+..++++|++|+|||..+-..
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLS--QREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHh--cCCCEEEEEcCCCCCHHHHHHHH
Confidence 34678888888887765442 22346889999999999876443
No 197
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.00 E-value=0.0028 Score=73.37 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=96.0
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
++.+-+..+++||+...++++...+..| +.++|.+-+.+-|.|++.++. .+++++|.+++|..+..+++..+.+
T Consensus 358 ~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 358 NETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHH
Confidence 3445556679999999999998888775 688888989999999888874 3458999999999999999999999
Q ss_pred HhcCCcceEecchHhhhcccccccccEEEeccccccchhhH
Q 003268 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 422 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~ 422 (835)
++.|.+.++||| +.|.+.++|.++++||.+.....+....
T Consensus 434 FR~g~IwvLicT-dll~RGiDf~gvn~VInyD~p~s~~syi 473 (593)
T KOG0344|consen 434 FRIGKIWVLICT-DLLARGIDFKGVNLVINYDFPQSDLSYI 473 (593)
T ss_pred HhccCeeEEEeh-hhhhccccccCcceEEecCCCchhHHHH
Confidence 999999999999 5677779999999999988877665443
No 198
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.96 E-value=0.0024 Score=72.14 Aligned_cols=66 Identities=26% Similarity=0.327 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~ 347 (835)
.|++.|+++++.+++.+. ...+..+.|.|+-|+|||.++-...-..-..++.+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~-~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIE-NEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHH-ccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 478999999999987774 366789999999999999764222222223467899999998877665
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.93 E-value=0.015 Score=60.02 Aligned_cols=124 Identities=20% Similarity=0.184 Sum_probs=68.9
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHH-HHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK-EEHLD 380 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv--Ptr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~-~~~l~ 380 (835)
+-++++||||+|||....-.+.....+++++.+++ ..|.=|.++.+.+.+.+ ++.+.......+..+. .+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcchhhHHHHHHHHH
Confidence 45789999999999997655555544577777665 35566666666666544 4554443322222111 11111
Q ss_pred hHhcCCcceEecchHhhhcccccccccEEEeccccccch--hhHHH----HHhhcCCceEEEeecCCChhhHHHHH
Q 003268 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEK----IASFKISVDVLTLSATPIPRTLYLAL 450 (835)
Q Consensus 381 ~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~--~~~e~----l~~~~~~~~vL~lSATp~p~tl~~~~ 450 (835)
....+++++|+||-+-+... ...+. +....+..-.+.+|||.....+....
T Consensus 78 -------------------~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 78 -------------------KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp -------------------HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred -------------------HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 11234578899998876432 11222 22334555678899998776654433
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.91 E-value=0.0086 Score=56.37 Aligned_cols=54 Identities=26% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
|...+..+...+ ....+..+++.|++|+|||..+...+......+..++++...
T Consensus 3 ~~~~~~~i~~~~-~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 3 QEEAIEALREAL-ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred hHHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 334444444433 233456799999999999976544443333334555555443
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.013 Score=66.71 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=67.8
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHH----hCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVV----SAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~----~~g~qvlVLv--Ptr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~ 375 (835)
.+..++++||||+|||+++...+.... ..++.|.++. +.|.-+..+...+.+.+ ++.+..... ..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l----gvpv~~~~~---~~~- 244 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM----GIPVKAIES---FKD- 244 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC----CcceEeeCc---HHH-
Confidence 356789999999999998754443322 2356666554 44555554444444432 444433221 111
Q ss_pred HHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchh--hHHHH----HhhcCC-ceEEEeecCCChhhHHH
Q 003268 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK--QKEKI----ASFKIS-VDVLTLSATPIPRTLYL 448 (835)
Q Consensus 376 ~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~--~~e~l----~~~~~~-~~vL~lSATp~p~tl~~ 448 (835)
... .+. .+.++++||||++.+.... +...+ .....+ -.+|.+|||..+..+..
T Consensus 245 --l~~---------------~L~---~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 245 --LKE---------------EIT---QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred --HHH---------------HHH---HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 000 111 2467899999999986422 12222 222223 35788999987766654
Q ss_pred HHh
Q 003268 449 ALT 451 (835)
Q Consensus 449 ~~~ 451 (835)
...
T Consensus 305 ~~~ 307 (388)
T PRK12723 305 IFH 307 (388)
T ss_pred HHH
Confidence 433
No 202
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.85 E-value=0.021 Score=71.90 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=77.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
..+.+++.|.+|+..++. + ..-++|.|..|+|||.+ +.++...+. .|.+|+.++||-..|..+. +.
T Consensus 343 ~g~~Ls~eQr~Av~~il~----s--~~v~vv~G~AGTGKTT~-l~~~~~~~e~~G~~V~~~ApTGkAA~~L~----e~-- 409 (988)
T PRK13889 343 RGLVLSGEQADALAHVTD----G--RDLGVVVGYAGTGKSAM-LGVAREAWEAAGYEVRGAALSGIAAENLE----GG-- 409 (988)
T ss_pred cCCCCCHHHHHHHHHHhc----C--CCeEEEEeCCCCCHHHH-HHHHHHHHHHcCCeEEEecCcHHHHHHHh----hc--
Confidence 356899999999998863 1 23478999999999986 444444443 4889999999987665432 21
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh--cCCceE
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDV 434 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~--~~~~~v 434 (835)
.|+....++++ +.....+ ...+...++|||||+-.++..+...+... ..+.++
T Consensus 410 --tGi~a~TI~sl---------l~~~~~~--------------~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garv 464 (988)
T PRK13889 410 --SGIASRTIASL---------EHGWGQG--------------RDLLTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKV 464 (988)
T ss_pred --cCcchhhHHHH---------Hhhhccc--------------ccccccCcEEEEECcccCCHHHHHHHHHhhhhCCCEE
Confidence 12322222111 1000011 11245678999999999888776665432 456666
Q ss_pred EEee
Q 003268 435 LTLS 438 (835)
Q Consensus 435 L~lS 438 (835)
|++-
T Consensus 465 VLVG 468 (988)
T PRK13889 465 VLVG 468 (988)
T ss_pred EEEC
Confidence 6653
No 203
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.80 E-value=0.0027 Score=66.43 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=42.7
Q ss_pred ccccEEEeccccccchhhHHHHHhhcCCceE-EEeecCCChhhHHHHH-----hcC-CCcceeeCCCCCccceeEEeccc
Q 003268 404 NNLGLLVVDEEQRFGVKQKEKIASFKISVDV-LTLSATPIPRTLYLAL-----TGF-RDASLISTPPPERLPIKTHLSAF 476 (835)
Q Consensus 404 ~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~v-L~lSATp~p~tl~~~~-----~~~-~d~s~i~~~p~~r~~V~~~~~~~ 476 (835)
++-+++.|||+|||.-.+.+.+-..-.+..+ +...++|..++..+.+ .|- .....+..|-..|+.+...+..+
T Consensus 100 ~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y 179 (233)
T PF05496_consen 100 KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFY 179 (233)
T ss_dssp -TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----
T ss_pred CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcC
Confidence 3446899999999988777776544344444 5556665443322111 110 11222333445677777777788
Q ss_pred CHHHHHHHHHH
Q 003268 477 SKEKVISAIKY 487 (835)
Q Consensus 477 ~~~~~~~~i~~ 487 (835)
+.+.+...+.+
T Consensus 180 ~~~el~~Iv~r 190 (233)
T PF05496_consen 180 SEEELAKIVKR 190 (233)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88777666654
No 204
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.77 E-value=0.034 Score=70.46 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=78.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
..+.+++.|.+|+..+.. ...-.+|.|+.|+|||.+. .++...+ ..|.+|+.++||---|..+. +..
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~------~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~- 445 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAG------PARIAAVVGRAGAGKTTMM-KAAREAWEAAGYRVVGGALAGKAAEGLE----KEA- 445 (1102)
T ss_pred cCCCCCHHHHHHHHHHhc------cCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEEcCcHHHHHHHH----Hhh-
Confidence 357899999999988742 1346899999999999864 3333333 45889999999987776542 211
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh--cCCceE
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDV 434 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~--~~~~~v 434 (835)
|+....+.++. .....| ...+..-++|||||+...+..+...+... ..+.++
T Consensus 446 ---Gi~a~TIas~l---------l~~~~~--------------~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garv 499 (1102)
T PRK13826 446 ---GIQSRTLSSWE---------LRWNQG--------------RDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKL 499 (1102)
T ss_pred ---CCCeeeHHHHH---------hhhccC--------------ccCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEE
Confidence 44444444321 000111 12345667999999999988776655443 245666
Q ss_pred EEee
Q 003268 435 LTLS 438 (835)
Q Consensus 435 L~lS 438 (835)
|++-
T Consensus 500 VLVG 503 (1102)
T PRK13826 500 VLVG 503 (1102)
T ss_pred EEEC
Confidence 6654
No 205
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.77 E-value=0.0099 Score=71.49 Aligned_cols=135 Identities=21% Similarity=0.285 Sum_probs=78.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhC-C-CEEEEEcccHHHHHHHH---HHHHHhh-cC-CCCcEEEEecCCCCHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSA-G-KQAMVLAPTIVLAKQHF---DVVSERF-SK-YPDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~-g-~qvlVLvPtr~La~Q~~---~~~~~~f-~~-~~gi~V~~l~g~~s~~e~ 375 (835)
.-++=|.+.||+|||.+|++.|+..... | -+.+|+|||.+.-.-.+ ....+.| .. +.+.+...+.-.. ..
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~--~~- 150 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE--DI- 150 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech--HH-
Confidence 4567788999999999999999876544 3 37889999987644322 2233334 22 1123333332211 11
Q ss_pred HHHHHhHhcCCcceEecchHhhhcc-----------cccccc---------------cEEEeccccccch--hhHHHHHh
Q 003268 376 EEHLDMIKHGHLNIIVGTHSLLGSR-----------VVYNNL---------------GLLVVDEEQRFGV--KQKEKIAS 427 (835)
Q Consensus 376 ~~~l~~l~~g~~dIIIgT~~~L~~~-----------l~~~~l---------------~lVIIDEaHr~g~--~~~e~l~~ 427 (835)
.....-.++.+.+++.|-+...+. ....++ -+|||||-|+|.. +....+..
T Consensus 151 -~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~~ 229 (985)
T COG3587 151 -EKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIKQ 229 (985)
T ss_pred -HHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHHh
Confidence 111112345577777776555322 111121 2699999999954 44455665
Q ss_pred hcCCceEEEeecCCC
Q 003268 428 FKISVDVLTLSATPI 442 (835)
Q Consensus 428 ~~~~~~vL~lSATp~ 442 (835)
+ .+.-+|=++||-.
T Consensus 230 l-~pl~ilRfgATfk 243 (985)
T COG3587 230 L-NPLLILRFGATFK 243 (985)
T ss_pred h-CceEEEEecccch
Confidence 5 4456778999953
No 206
>PRK08181 transposase; Validated
Probab=96.75 E-value=0.029 Score=60.81 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCChHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHH
Q 003268 266 PKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 345 (835)
Q Consensus 266 ~~~~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~ 345 (835)
|.....+.|.-.+...+.+.|..++......+ + .+.+++++||+|+|||-.+...+..+...|..|+++. ...|..
T Consensus 72 p~~~tle~fd~~~~~~~~~~~~~~L~~~~~~~-~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~ 147 (269)
T PRK08181 72 PPGKTLDSFDFEAVPMVSKAQVMAIAAGDSWL-A--KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQ 147 (269)
T ss_pred CCCCCHhhCCccCCCCCCHHHHHHHHHHHHHH-h--cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHH
Confidence 33333444433333345678887775442222 2 3578999999999999776555555566777776653 444544
Q ss_pred HH
Q 003268 346 QH 347 (835)
Q Consensus 346 Q~ 347 (835)
++
T Consensus 148 ~l 149 (269)
T PRK08181 148 KL 149 (269)
T ss_pred HH
Confidence 43
No 207
>PRK06526 transposase; Provisional
Probab=96.75 E-value=0.0087 Score=64.34 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=28.9
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+.+++++||+|+|||..+...+..+...|..|++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t 133 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT 133 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh
Confidence 3578999999999999887666666666787776643
No 208
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.73 E-value=0.0081 Score=71.21 Aligned_cols=115 Identities=26% Similarity=0.450 Sum_probs=87.6
Q ss_pred HHHHHhCCCEEEEEcccHH--------HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchH
Q 003268 324 IFCVVSAGKQAMVLAPTIV--------LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~--------La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~ 395 (835)
+...+..|.|+.++||..+ .|...++.++.. +++.+|+++||..+.+++.+.+++.++|+++|+|+|.-
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~---~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF---LPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHH---cccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 4455668999999999764 455566666643 45789999999999999999999999999999999952
Q ss_pred hhhcccccccccEEEeccccccchhhHHHHHhh----cCCceEEEeecCCC
Q 003268 396 LLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF----KISVDVLTLSATPI 442 (835)
Q Consensus 396 ~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~----~~~~~vL~lSATp~ 442 (835)
+-=.++..|-.++||..|+|||..|...|+.. .....+++++..|.
T Consensus 543 -IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 543 -IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred -EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 11235678899999999999999888777643 12334556665554
No 209
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.72 E-value=0.0086 Score=72.61 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccC
Q 003268 478 KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESG 557 (835)
Q Consensus 478 ~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~G 557 (835)
.+.+..++...+..|+++||.+|.+..+..+.+.|+..|++..++++|++++..+|.+.+.+..+|+.+|+|+|-.+--
T Consensus 174 Tevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF- 252 (665)
T PRK14873 174 ARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF- 252 (665)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-
Confidence 3567788888889999999999999999999999999997678999999999999999999999999999999986532
Q ss_pred CCCCCcCEEEEecC
Q 003268 558 LDIQNANTIIVQDV 571 (835)
Q Consensus 558 IDIp~v~~VIi~d~ 571 (835)
.=++|...||+.+-
T Consensus 253 aP~~~LgLIIvdEE 266 (665)
T PRK14873 253 APVEDLGLVAIWDD 266 (665)
T ss_pred eccCCCCEEEEEcC
Confidence 34567778877554
No 210
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.67 E-value=0.01 Score=71.72 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=40.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 274 ~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
+.-.|||+|+|.|..-+..++..+. +..+.++..|||+|||+..|-..+
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~---~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLD---RKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHH---HhhhhhccCCCCCCccHHHHHHHH
Confidence 3456899999999999999998773 356789999999999998664443
No 211
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.022 Score=63.92 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=29.3
Q ss_pred cEEEeccccccchhhHHHHHhhcCCceEEEeecCC
Q 003268 407 GLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 407 ~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp 441 (835)
-+++|||+|||.-.|.+.+.-.-.+..+++.-||-
T Consensus 106 tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRFNKAQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccC
Confidence 47899999999988888777776778888888884
No 212
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.61 E-value=0.026 Score=68.48 Aligned_cols=116 Identities=26% Similarity=0.417 Sum_probs=86.1
Q ss_pred HHHHHHHhCCCEEEEEcccH--------HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecc
Q 003268 322 RAIFCVVSAGKQAMVLAPTI--------VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393 (835)
Q Consensus 322 ~a~~~~~~~g~qvlVLvPtr--------~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT 393 (835)
..+...+.++.+++|++|+. .-+.+.++.+.+.| ++..|+.++|..+..++...++.+.+|+.+|+|+|
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT 515 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVAT 515 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 33444556789999999975 33556666666544 47899999999999999999999999999999999
Q ss_pred hHhhhcccccccccEEEeccccccchhhHHHH-H---hhcCCceEEEeecCC
Q 003268 394 HSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI-A---SFKISVDVLTLSATP 441 (835)
Q Consensus 394 ~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l-~---~~~~~~~vL~lSATp 441 (835)
. .+...+++.++++||+..++++|..+...+ - +.......++++.+|
T Consensus 516 ~-vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~ 566 (630)
T TIGR00643 516 T-VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNP 566 (630)
T ss_pred c-eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCC
Confidence 5 666678899999999999999886544322 1 222344556666443
No 213
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.052 Score=58.07 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhhhcC-CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 282 PTPDQKKAFLDVERDLTER-ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~-~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.++.|..|+..+.+-..+- .....++++|++|+|||..+...+......+..|+++
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3567877877665432111 1124789999999999987665555555667777766
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.60 E-value=0.0046 Score=57.54 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
+..++++||+|+|||..+...+......+..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 35789999999999988755544433333357777776543
No 215
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.56 E-value=0.011 Score=74.14 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=81.6
Q ss_pred HHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccccc
Q 003268 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 403 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~ 403 (835)
+...+.++.|++|++|++.-+..+++.+++.+ |+.+|+.+||..+..++...+..+.+|+++|+|+|. .+...+++
T Consensus 653 i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-iie~GIDI 728 (926)
T TIGR00580 653 IRRELLRGGQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-IIETGIDI 728 (926)
T ss_pred HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhccccc
Confidence 34455678999999999988888888887643 578999999999999999999999999999999994 67777899
Q ss_pred ccccEEEeccccccchhhH
Q 003268 404 NNLGLLVVDEEQRFGVKQK 422 (835)
Q Consensus 404 ~~l~lVIIDEaHr~g~~~~ 422 (835)
.++++||++.++++|..+.
T Consensus 729 p~v~~VIi~~a~~~gls~l 747 (926)
T TIGR00580 729 PNANTIIIERADKFGLAQL 747 (926)
T ss_pred ccCCEEEEecCCCCCHHHH
Confidence 9999999999999987543
No 216
>PRK14974 cell division protein FtsY; Provisional
Probab=96.56 E-value=0.1 Score=58.40 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc--H-HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT--I-VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt--r-~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
++.-++++|++|+|||++....+......|..++++..- | ....|+. .....+ ++.+.....+.+.... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~-~~a~~l----gv~v~~~~~g~dp~~v--~ 211 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE-EHAERL----GVKVIKHKYGADPAAV--A 211 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHH-HHHHHc----CCceecccCCCCHHHH--H
Confidence 356788999999999998655554444567777776542 3 3344543 333333 3433322111111110 0
Q ss_pred HHhHhcCCcceEecchHhhhcccccccccEEEeccccccch--hhHHHHHh----hcCCceEEEeecCCChhhHHHH
Q 003268 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIAS----FKISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 379 l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~--~~~e~l~~----~~~~~~vL~lSATp~p~tl~~~ 449 (835)
.. .+. .....++++||||.+++... ...+.++. ..++..++.++||........+
T Consensus 212 ~~---------------ai~-~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 212 YD---------------AIE-HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred HH---------------HHH-HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 00 010 01224678999999998742 22233322 3466678889998755544433
No 217
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.53 E-value=0.01 Score=76.11 Aligned_cols=95 Identities=17% Similarity=0.311 Sum_probs=81.6
Q ss_pred HHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc
Q 003268 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 323 a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~ 402 (835)
+++..+..+.+++|++|++.-+..+++.+++.+ |+.+|..+||..+..++...+..+.+|+++|+||| ..+...++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-dIierGID 876 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-TIIETGID 876 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-chhhcccc
Confidence 344555668899999999998888888887643 46789999999999999999999999999999999 46777789
Q ss_pred cccccEEEeccccccchhh
Q 003268 403 YNNLGLLVVDEEQRFGVKQ 421 (835)
Q Consensus 403 ~~~l~lVIIDEaHr~g~~~ 421 (835)
+.++++||++.+++|+..+
T Consensus 877 IP~v~~VIi~~ad~fglaq 895 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQ 895 (1147)
T ss_pred cccCCEEEEecCCCCCHHH
Confidence 9999999999999998755
No 218
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.49 E-value=0.014 Score=71.05 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~g 360 (835)
.++.+|++|+..++. . ..-.||.|=+|+|||......+-..+..|++||+.+=|...+..+.-.++. + +
T Consensus 669 ~LN~dQr~A~~k~L~---a---edy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~-~----~ 737 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALA---A---EDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKG-F----G 737 (1100)
T ss_pred hcCHHHHHHHHHHHh---c---cchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhc-c----C
Confidence 788999999988875 2 234789999999999987666555566799999999998877776666654 2 2
Q ss_pred cEEEEecCC---------------CCHHHHHHHHHhHhcCCcceEecchHhhhcc-cccccccEEEecccccc
Q 003268 361 IKVGLLSRF---------------QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-VVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 361 i~V~~l~g~---------------~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-l~~~~l~lVIIDEaHr~ 417 (835)
+.+.-+... .+.+........ -+.+.||.+|---+.+. +..+.++++|||||-.+
T Consensus 738 i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~--~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 738 IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKF--LDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQI 808 (1100)
T ss_pred cceeecCCccccchHHHHHhcccccchhhHHHHHHH--hCCCcEEEEEccCCCchhhhccccCEEEEcccccc
Confidence 332211111 111111111111 14588999885444332 23467999999999865
No 219
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.056 Score=63.27 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..+...+...+..+.-++..|++||+|+|||..+...+
T Consensus 19 q~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 19 QDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 444444443333333334557999999999999875443
No 220
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.45 E-value=0.022 Score=60.40 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+..++..+.+ +.....+..++++||+|+|||-.+...+......+.+++++.
T Consensus 29 n~~a~~~l~~-~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 29 NDSLLAALQN-ALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred cHHHHHHHHH-HHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3445544433 222334568999999999999765444433444566666653
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.058 Score=61.23 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=27.4
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+..++++||||+|||..+...+......|+++.++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 467899999999999987665555556677776654
No 222
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.44 E-value=0.013 Score=73.22 Aligned_cols=98 Identities=14% Similarity=0.261 Sum_probs=85.4
Q ss_pred HHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccc
Q 003268 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 406 (835)
Q Consensus 327 ~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l 406 (835)
-+.+|+||.|+.|..+-..+..+.+++. .|..+|++.||..+..+-++.+....+|++||+|||. .+-..++..+-
T Consensus 799 El~RgGQvfYv~NrV~~Ie~~~~~L~~L---VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-IIEtGIDIPnA 874 (1139)
T COG1197 799 ELLRGGQVFYVHNRVESIEKKAERLREL---VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-IIETGIDIPNA 874 (1139)
T ss_pred HHhcCCEEEEEecchhhHHHHHHHHHHh---CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-eeecCcCCCCC
Confidence 3567999999999999999999999874 4689999999999999999999999999999999994 44556778899
Q ss_pred cEEEeccccccchhhHHHHHhh
Q 003268 407 GLLVVDEEQRFGVKQKEKIASF 428 (835)
Q Consensus 407 ~lVIIDEaHr~g~~~~e~l~~~ 428 (835)
..+||+-||+||..|.-.|+..
T Consensus 875 NTiIIe~AD~fGLsQLyQLRGR 896 (1139)
T COG1197 875 NTIIIERADKFGLAQLYQLRGR 896 (1139)
T ss_pred ceEEEeccccccHHHHHHhccc
Confidence 9999999999999887776543
No 223
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.37 E-value=0.012 Score=71.84 Aligned_cols=96 Identities=22% Similarity=0.399 Sum_probs=80.7
Q ss_pred HHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-CccCCCCCCc
Q 003268 487 YELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-VESGLDIQNA 563 (835)
Q Consensus 487 ~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-ie~GIDIp~v 563 (835)
..+..|.+++|.+|+..-+...++.+++.++ ++++..+||+++..++..++..+.+|+.+|+|+|.. +...+.+.++
T Consensus 305 ~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l 384 (681)
T PRK10917 305 AAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNL 384 (681)
T ss_pred HHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhccc
Confidence 3345688999999999988888888887764 478999999999999999999999999999999974 5567889999
Q ss_pred CEEEEecCCCCCHhHHHHH
Q 003268 564 NTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 564 ~~VIi~d~p~~sl~~l~Qr 582 (835)
.+||+...++|+..+....
T Consensus 385 ~lvVIDE~Hrfg~~qr~~l 403 (681)
T PRK10917 385 GLVIIDEQHRFGVEQRLAL 403 (681)
T ss_pred ceEEEechhhhhHHHHHHH
Confidence 9999988888876554433
No 224
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.35 E-value=0.079 Score=62.43 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
.|..++..+...+..+..+...|++||.|+|||..+...+-
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46666666655454444456899999999999998755443
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.33 E-value=0.17 Score=58.50 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=65.0
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH--hCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~--~~g~qvlVLv--Ptr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
++.++++||||+|||..+...+.... ..+.+|.++. |-+.-+.+....+...+ ++.+..... ..+-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~~~~~---~~~l--- 290 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM----GIPVEVVYD---PKEL--- 290 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh----CCceEccCC---HHhH---
Confidence 45789999999999998765544443 4466666654 33433333333333322 333322221 1111
Q ss_pred HHhHhcCCcceEecchHhhhcccccccccEEEeccccccchh--hHHHHHhh-----cCCceEEEeecCCChhhHHHHHh
Q 003268 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK--QKEKIASF-----KISVDVLTLSATPIPRTLYLALT 451 (835)
Q Consensus 379 l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~--~~e~l~~~-----~~~~~vL~lSATp~p~tl~~~~~ 451 (835)
.. .+. .+.++++||||.+-+.... ..+.+..+ .+....|++|||..+..+.....
T Consensus 291 ~~---------------~l~---~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 291 AK---------------ALE---QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred HH---------------HHH---HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH
Confidence 00 111 2346789999998664321 12222221 12234788999998777665544
Q ss_pred cC
Q 003268 452 GF 453 (835)
Q Consensus 452 ~~ 453 (835)
.+
T Consensus 353 ~f 354 (424)
T PRK05703 353 HF 354 (424)
T ss_pred Hh
Confidence 44
No 226
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.042 Score=63.87 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
.|..++..+...+..+.-+...|++||.|+|||.++...+-
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36666665555443433344579999999999998755543
No 227
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.24 E-value=0.022 Score=69.67 Aligned_cols=89 Identities=22% Similarity=0.305 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCC
Q 003268 483 SAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 483 ~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~ 562 (835)
..+...+..|.+++|++|+++-+..+++.+++.+ +..+..+||+++..++.+.+.+...|+.+|+|+|..+-. +.+.+
T Consensus 181 ~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~ 258 (679)
T PRK05580 181 QAIAEVLAQGKQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKN 258 (679)
T ss_pred HHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccC
Confidence 4455556678899999999999999999999877 568999999999999999999999999999999985432 56778
Q ss_pred cCEEEEecCCC
Q 003268 563 ANTIIVQDVQQ 573 (835)
Q Consensus 563 v~~VIi~d~p~ 573 (835)
+.+||+...+.
T Consensus 259 l~liVvDEeh~ 269 (679)
T PRK05580 259 LGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCc
Confidence 88988876543
No 228
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.24 E-value=0.019 Score=67.72 Aligned_cols=90 Identities=23% Similarity=0.315 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDI 560 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDI 560 (835)
...++...+..+++++|++|++.-+..+++.|++.+ +..+.++||+++..+|.+++.+..+|+.+|+|+|..+-. ..+
T Consensus 14 ~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f-~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~ 91 (505)
T TIGR00595 14 YLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF-GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPF 91 (505)
T ss_pred HHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh-CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-Ccc
Confidence 345566667788999999999999999999999877 467899999999999999999999999999999975432 457
Q ss_pred CCcCEEEEecCC
Q 003268 561 QNANTIIVQDVQ 572 (835)
Q Consensus 561 p~v~~VIi~d~p 572 (835)
+++..||+....
T Consensus 92 ~~l~lIIVDEeh 103 (505)
T TIGR00595 92 KNLGLIIVDEEH 103 (505)
T ss_pred cCCCEEEEECCC
Confidence 788888876654
No 229
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.23 E-value=0.093 Score=57.03 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=34.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv--Ptr~La~Q~~~~~~~ 353 (835)
++-++++|++|+|||+++...+......|++|+++. +.|.-+.+....+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~ 124 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAK 124 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456778999999999987666655556677887775 345544444444444
No 230
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.13 E-value=0.016 Score=70.59 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=63.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~ 347 (835)
..|...-.+.+++.|++|+..- ..+++|.|..|||||.+.+.-+...+.. +.++++++.|+..|..+
T Consensus 187 ~~f~~~e~~~L~~~Q~~av~~~---------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em 257 (684)
T PRK11054 187 DFFSQVESSPLNPSQARAVVNG---------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEM 257 (684)
T ss_pred HHHHhccCCCCCHHHHHHHhCC---------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHH
Confidence 3444444478999999997421 2357899999999999976665544432 45899999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCC
Q 003268 348 FDVVSERFSKYPDIKVGLLSRF 369 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~ 369 (835)
.+++...++. .++.|..+|++
T Consensus 258 ~eRL~~~lg~-~~v~v~TFHSl 278 (684)
T PRK11054 258 DERIRERLGT-EDITARTFHAL 278 (684)
T ss_pred HHHHHHhcCC-CCcEEEeHHHH
Confidence 9998876652 24566666653
No 231
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.03 Score=68.12 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCC
Q 003268 479 EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558 (835)
Q Consensus 479 ~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GI 558 (835)
+.++++|.+.+..|.|+|+.+|-+.....+.+.++..|+ .+|+++|+++++.+|.....+..+|+.+|+|+|-.+-- .
T Consensus 232 EvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~ 309 (730)
T COG1198 232 EVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-L 309 (730)
T ss_pred HHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-C
Confidence 578899999999999999999999999999999999995 89999999999999999999999999999999986521 3
Q ss_pred CCCCcCEEEE
Q 003268 559 DIQNANTIIV 568 (835)
Q Consensus 559 DIp~v~~VIi 568 (835)
=++|+..||+
T Consensus 310 Pf~~LGLIIv 319 (730)
T COG1198 310 PFKNLGLIIV 319 (730)
T ss_pred chhhccEEEE
Confidence 3567777776
No 232
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.13 Score=60.45 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+.+.+..+.-+...|++||.|+|||..+...+.
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHH
Confidence 4555554544443444466799999999999998755543
No 233
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.99 E-value=0.052 Score=65.78 Aligned_cols=135 Identities=19% Similarity=0.237 Sum_probs=84.7
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH---------hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC-CCCH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV---------SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR-FQSK 372 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~---------~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g-~~s~ 372 (835)
-.-.|+..+.|-|||...+..++..- ..++..|+++|+ .+..||..++ .....-..+.+.+++| ....
T Consensus 152 ~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~gr~kd~ 229 (674)
T KOG1001|consen 152 LRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHGRTKDK 229 (674)
T ss_pred cccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHH-hccCCccceEEEEeccccccc
Confidence 34578999999999998766555321 134567888887 5667888888 4444444577888887 2222
Q ss_pred HHHHHHHHhHhcCCcceEecchHhhhc-ccccccccEEEeccccccchhhHHHHHhh--cCCceEEEeecCCChhhHHH
Q 003268 373 AEKEEHLDMIKHGHLNIIVGTHSLLGS-RVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVLTLSATPIPRTLYL 448 (835)
Q Consensus 373 ~e~~~~l~~l~~g~~dIIIgT~~~L~~-~l~~~~l~lVIIDEaHr~g~~~~e~l~~~--~~~~~vL~lSATp~p~tl~~ 448 (835)
.+ ...+|||++|+..+.. .+.--.+-.+|+||+|..........+.. -....--.+|+||+......
T Consensus 230 ~e---------l~~~dVVltTy~il~~~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~ 299 (674)
T KOG1001|consen 230 SE---------LNSYDVVLTTYDILKNSPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDE 299 (674)
T ss_pred ch---------hcCCceEEeeHHHhhcccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHH
Confidence 22 1348899999999973 22223345699999998754322211111 11223346799998766543
No 234
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.98 E-value=0.05 Score=65.74 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+...+..+.-+..+|++|+.|+|||..+...+.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 6666665555444444456789999999999998755443
No 235
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.97 E-value=0.12 Score=62.52 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..++..+...+..+.-+.-.|++|+.|+|||.++...+
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 666666666555443333346899999999999875544
No 236
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.97 E-value=0.035 Score=67.44 Aligned_cols=87 Identities=22% Similarity=0.315 Sum_probs=76.2
Q ss_pred HHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccc
Q 003268 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNL 406 (835)
Q Consensus 327 ~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l 406 (835)
...++.+++|+++|+.-+..+.+.+.+. |+.+.++++..+..++.+.+..++.|.++|+||| +.|...+.+.++
T Consensus 438 ~~~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-~~L~rGfDiP~v 511 (655)
T TIGR00631 438 RVARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLPEV 511 (655)
T ss_pred HHcCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-ChhcCCeeeCCC
Confidence 3456889999999999999888877753 6889999998888999999999999999999999 577788899999
Q ss_pred cEEEeccccccch
Q 003268 407 GLLVVDEEQRFGV 419 (835)
Q Consensus 407 ~lVIIDEaHr~g~ 419 (835)
++||+-+++.+|+
T Consensus 512 ~lVvi~DadifG~ 524 (655)
T TIGR00631 512 SLVAILDADKEGF 524 (655)
T ss_pred cEEEEeCcccccC
Confidence 9999988888876
No 237
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.94 E-value=0.042 Score=63.26 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=25.4
Q ss_pred cccEEEeccccccchhhHHHHHhhcCCceEEEeecCC
Q 003268 405 NLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 405 ~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp 441 (835)
...+|+|||+|++...+.+.+...-....++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCC
Confidence 4568999999999776666655444445566666653
No 238
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.065 Score=61.68 Aligned_cols=108 Identities=8% Similarity=0.210 Sum_probs=74.7
Q ss_pred CeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcC--ccCCCCCCcCEEEEec
Q 003268 493 GQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV--ESGLDIQNANTIIVQD 570 (835)
Q Consensus 493 gqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~ii--e~GIDIp~v~~VIi~d 570 (835)
.-++|+.|+--+--++-.++++. ++....+|---+...-..+-.-|..|...||+-|--+ =+--+|.+|..||.|.
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e--~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE--EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh--hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 45789999977777788888776 4443344433334445555667999999999999743 3567889999999999
Q ss_pred CCCCCH---hHHHHHhcccCCCC----CceEEEEEecCCC
Q 003268 571 VQQFGL---AQLYQLRGRVGRAD----KEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl---~~l~Qr~GRaGR~g----~~G~ay~l~~~~~ 603 (835)
+|. .+ ++++-+.+|+--.| ....|-++|++-+
T Consensus 631 pP~-~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 631 PPN-NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred CCC-CcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 997 33 45567777764333 3467888887654
No 239
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.90 E-value=0.2 Score=60.24 Aligned_cols=171 Identities=14% Similarity=0.090 Sum_probs=98.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHH
Q 003268 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 275 ~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..-.|.-|+|.=.+=|+++.+.+.+ +--++..|=|.|||.+..+.+...+. .|..++|.+|...-+.++++++..
T Consensus 163 ~~~np~~~~~~~~~~id~~~~~fkq----~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 163 VAFNPEAPSPRTLREIDRIFDEYGK----CYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred hhcCcCCCChhhHHHHHHHHHHHhh----cceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 3345677888888888888876642 44678899999999986433333222 588999999999999999988877
Q ss_pred hhcC------CCCc-EEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHH
Q 003268 354 RFSK------YPDI-KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIA 426 (835)
Q Consensus 354 ~f~~------~~gi-~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~ 426 (835)
.+.. ++.. .+..+.++...-.-. .-...+.|...|.+++.+ .+...-.++++||||||+-+.......+.
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~-~p~gak~G~sti~F~Ars--~~s~RG~~~DLLIVDEAAfI~~~~l~aIl 315 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYI-SDPAAKEGKTTAHFLASS--PNAARGQNPDLVIVDEAAFVNPGALLSVL 315 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEe-cCcccccCcceeEEeccc--CCCcCCCCCCEEEEECcccCCHHHHHHHH
Confidence 6652 1211 112122211000000 000001121223332211 11122235689999999998887666654
Q ss_pred hhc--CCceEEEeecCCChhhHHHHHhc
Q 003268 427 SFK--ISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 427 ~~~--~~~~vL~lSATp~p~tl~~~~~~ 452 (835)
-.- .+.+++.+|.+-.....-..+..
T Consensus 316 P~l~~~~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 316 PLMAVKGTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred HHHccCCCceEEEeCCCCcchHHHHhhh
Confidence 332 36677778877645444333333
No 240
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.17 Score=60.97 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
|..++..+...+..+..+..+|++||.|+|||..+...+-.
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 66666666655545455667999999999999987655443
No 241
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.19 Score=60.60 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..+...+.+.+..+.-+.-.|++||.|+|||..+...+.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK 59 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAK 59 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5555555555443333355679999999999998755443
No 242
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.82 E-value=0.13 Score=59.56 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.|..++++|++|+|||+++...+......|.+++++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 3667899999999999997665555555677777665
No 243
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.18 Score=61.36 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+.+.+..+.-+.-+|++|+.|+|||..+...+.
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAK 60 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAK 60 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5666665555443333344568999999999988755443
No 244
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.14 Score=63.33 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..++..+.+.+..+.-+.-.|++||.|+|||.++...+
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 556655555444332333335899999999999875544
No 245
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.80 E-value=0.074 Score=55.41 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEE
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlV 336 (835)
.+..++..+.+.. ....+..++++|++|+|||..+...+......+..+++
T Consensus 21 ~~~~~~~~l~~~~-~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~ 71 (226)
T TIGR03420 21 GNAELLAALRQLA-AGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIY 71 (226)
T ss_pred CcHHHHHHHHHHH-hcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 4455666555432 23456789999999999998775544444334444443
No 246
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.79 E-value=0.082 Score=62.47 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+.+.+..+.-+.-.|++||.|+|||..+...+.
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHH
Confidence 6666665555554444445579999999999998755443
No 247
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.76 E-value=0.15 Score=53.48 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=24.2
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+..++++|++|+|||..+-..+......+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3567999999999999765444433334454554443
No 248
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.70 E-value=0.016 Score=70.72 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-C---CEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-G---KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g---~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. + .++++++.|+..|.++.+++...++
T Consensus 2 ~Ln~~Q~~av~~~---------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV---------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999997542 2468899999999999987666665542 2 5799999999999999999987665
Q ss_pred CC--CCcEEEEecC
Q 003268 357 KY--PDIKVGLLSR 368 (835)
Q Consensus 357 ~~--~gi~V~~l~g 368 (835)
.. .++.|+.+|+
T Consensus 73 ~~~~~~v~i~TfHS 86 (672)
T PRK10919 73 RKEARGLMISTFHT 86 (672)
T ss_pred cccccCcEEEcHHH
Confidence 31 2456666655
No 249
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.70 E-value=0.065 Score=70.15 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=79.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH--HHHHHHHH--hCCCEEEEEcccHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVV--SAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va--l~a~~~~~--~~g~qvlVLvPtr~La~Q~ 347 (835)
..+.......+++.|++|+..++.. ..+-++|.|..|+|||.+. +..++..+ ..+..++.++||---+..+
T Consensus 826 ~~~~~~~~~~Lt~~Qr~Av~~iLts-----~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 826 ERVPGELMEKLTSGQRAATRMILET-----SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred hhhhhhhhcccCHHHHHHHHHHHhC-----CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 3333344458999999999988741 2356899999999999873 33333333 2367899999998777654
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHh
Q 003268 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS 427 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~ 427 (835)
. + . |+....++++..... . .. ...........+|||||+=.++..+...+..
T Consensus 901 ~----e-~----Gi~A~TIasfL~~~~----------~--------~~-~~~~~~~~~~~llIVDEASMV~~~~m~~ll~ 952 (1623)
T PRK14712 901 R----S-A----GVDAQTLASFLHDTQ----------L--------QQ-RSGETPDFSNTLFLLDESSMVGNTDMARAYA 952 (1623)
T ss_pred H----H-h----CchHhhHHHHhcccc----------c--------hh-hcccCCCCCCcEEEEEccccccHHHHHHHHH
Confidence 2 2 1 333333333211000 0 00 0001112345899999999988766544433
Q ss_pred -hc-CCceEEEeecC
Q 003268 428 -FK-ISVDVLTLSAT 440 (835)
Q Consensus 428 -~~-~~~~vL~lSAT 440 (835)
.. .+.++|++-=+
T Consensus 953 ~~~~~garvVLVGD~ 967 (1623)
T PRK14712 953 LIAAGGGRAVASGDT 967 (1623)
T ss_pred hhhhCCCEEEEEcch
Confidence 22 34666665433
No 250
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.036 Score=56.70 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=64.2
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHh
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~ 383 (835)
+--+++||+.||||+-.+..+......|.++++..|..- .+++ ......+.+.+.
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD----------~R~~----~~~V~Sr~G~~~----------- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID----------TRYG----VGKVSSRIGLSS----------- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc----------cccc----cceeeeccCCcc-----------
Confidence 456899999999999999998888888999999998631 2332 122222222111
Q ss_pred cCCcceEecchHhhhcccc----cccccEEEeccccccchhhHHHHHhhcCC
Q 003268 384 HGHLNIIVGTHSLLGSRVV----YNNLGLLVVDEEQRFGVKQKEKIASFKIS 431 (835)
Q Consensus 384 ~g~~dIIIgT~~~L~~~l~----~~~l~lVIIDEaHr~g~~~~e~l~~~~~~ 431 (835)
.-++|-...-+.+.+. ..++++|.|||||-|...+...+..+...
T Consensus 60 ---~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~~v~~l~~lad~ 108 (201)
T COG1435 60 ---EAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADR 108 (201)
T ss_pred ---cceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCHHHHHHHHHHHhh
Confidence 1233333333332221 11278999999999988888777777554
No 251
>PRK08727 hypothetical protein; Validated
Probab=95.69 E-value=0.085 Score=55.90 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
...++++|++|+|||-.+-..+......+.+++++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 345899999999999765444444445566776653
No 252
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.27 Score=58.14 Aligned_cols=39 Identities=23% Similarity=0.144 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..++..+...+..+.-+.-.|++||.|+|||.++...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 556666555544333334456999999999999875443
No 253
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.62 E-value=0.082 Score=64.89 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=27.1
Q ss_pred ccccEEEeccccccchhhHHHHHhhcCCceEEEeecCC
Q 003268 404 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 404 ~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp 441 (835)
.+..++||||+|+|...+...+...-.+..+++.+||.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTT 145 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATT 145 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecC
Confidence 34568999999999776665555544556777777774
No 254
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.55 E-value=0.023 Score=62.69 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=32.1
Q ss_pred ccccEEEeccccccchhhHHHHHhhcCCceEEEeecCCChhhHH
Q 003268 404 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLY 447 (835)
Q Consensus 404 ~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp~p~tl~ 447 (835)
+.-.++.|||+|||.-.|...+.-.-.+..+++.-||-....++
T Consensus 221 krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFq 264 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQ 264 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccc
Confidence 34457899999999887777666666677888899996443433
No 255
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.52 E-value=0.29 Score=61.04 Aligned_cols=41 Identities=22% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
|..++..+...+..+.-++-.|++|+.|+|||.++...+..
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~ 60 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARS 60 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56666655554433333445799999999999987665543
No 256
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.26 Score=58.62 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
-|..++..+...+..+..+...|++||.|+|||..+...+-
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36666666665553333344578999999999998755543
No 257
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.32 Score=55.09 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
.|..++..+...+..+.-+...|++||.|+|||..+...+
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHH
Confidence 4666666666555433334556999999999998875544
No 258
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.47 E-value=0.04 Score=61.12 Aligned_cols=60 Identities=25% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCCCC-CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHH
Q 003268 278 FPYEP-TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIV 342 (835)
Q Consensus 278 ~~~~~-tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~ 342 (835)
+...| +-.|.-|++.++. +.-.-+.+.|..|+|||+.|+.+.+..+.. -.+++|.=|+..
T Consensus 224 wGi~prn~eQ~~ALdlLld-----~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vp 287 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLD-----DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVP 287 (436)
T ss_pred hccCcccHHHHHHHHHhcC-----CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcC
Confidence 33444 4567777777764 223457789999999999999888876543 346777777654
No 259
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.3 Score=58.56 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+...+..+.-++-.|++||.|+|||.++...+-
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6667666665554333344468999999999998765543
No 260
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.47 E-value=0.065 Score=54.45 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=30.6
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
.+++||++||||+-.+..+......+++++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 478999999999999888877777899999999964
No 261
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.44 E-value=0.1 Score=59.82 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
.|..++..+.+.+..+.-+...|++||.|+|||.++...+-.
T Consensus 20 Gq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 20 AQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred ChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 366666655555533334455889999999999987655443
No 262
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.42 E-value=0.17 Score=55.36 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.+..++++||+|+|||..+..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346799999999999976543
No 263
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.40 E-value=0.05 Score=61.27 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
-|.+++..+...+..+.-+.-.|++||.|+|||..+...+-..+
T Consensus 27 Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 27 GHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 36777777776665544455799999999999998765554443
No 264
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.16 Score=57.52 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHH-hCC-CEEEEEcc--cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAG-KQAMVLAP--TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~-~~g-~qvlVLvP--tr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~ 377 (835)
.+..++++||||+|||..+...+.... ..| .++.++.. .+.-+.+....+.+.+ ++.+.......+.. .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~~~~~~~l~---~ 208 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKIL----GVPVHAVKDGGDLQ---L 208 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHc----CCceEecCCcccHH---H
Confidence 367899999999999998765554433 334 45555442 1333444444444332 34444333221110 0
Q ss_pred HHHhHhcCCcceEecchHhhhcccccccccEEEeccccccch--hhHHHHHhh---c-CCceEEEeecCCChhhHHHH
Q 003268 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASF---K-ISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 378 ~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~--~~~e~l~~~---~-~~~~vL~lSATp~p~tl~~~ 449 (835)
.+ ..+.+.++|+||++=+... ...+.+..+ . +...+|++|||.....+...
T Consensus 209 ------------------~l---~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 209 ------------------AL---AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ------------------HH---HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 11 1256678999999865422 122333333 1 23457889999877665543
No 265
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.14 Score=54.47 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
.-.+++-.+..+... ...-..++|++|||||.+.= ++......+..++++.|-.
T Consensus 35 ~h~e~l~~l~~~i~d--~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~ 88 (269)
T COG3267 35 DHNEALLMLHAAIAD--GQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKP 88 (269)
T ss_pred hhhHHHHHHHHHHhc--CCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCc
Confidence 334566556555432 23367899999999997754 5554444444444444433
No 266
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.35 E-value=0.082 Score=51.15 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=28.7
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
++|+|++|+|||..+...+......+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 58999999999998766666655567788887665443
No 267
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.33 E-value=0.16 Score=68.77 Aligned_cols=124 Identities=18% Similarity=0.133 Sum_probs=75.0
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH---HHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHHh
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL---RAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val---~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
.+.+++.|++|+..++.. ...-++|.|..|+|||.+.. .++..... .+.+++.++||-.-+.++. +.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~-----~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~ 1087 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIST-----KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SA 1087 (1960)
T ss_pred cCCCCHHHHHHHHHHHhC-----CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hc
Confidence 457999999999998741 23457889999999998752 23333333 4778999999987766542 21
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh--cCCc
Q 003268 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISV 432 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~--~~~~ 432 (835)
|+....+.++.. + ... ......+....++||||+=..+..+...+... ..+.
T Consensus 1088 -----g~~a~Ti~s~l~------------~--~~~-------~~~~~~~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~a 1141 (1960)
T TIGR02760 1088 -----GVQAQTLDSFLT------------D--ISL-------YRNSGGDFRNTLFILDESSMVSNFQLTHATELVQKSGS 1141 (1960)
T ss_pred -----CCchHhHHHHhc------------C--ccc-------ccccCCCCcccEEEEEccccccHHHHHHHHHhccCCCC
Confidence 333322222211 0 000 00011134567999999999888776665443 2345
Q ss_pred eEEEe
Q 003268 433 DVLTL 437 (835)
Q Consensus 433 ~vL~l 437 (835)
++|++
T Consensus 1142 k~vlv 1146 (1960)
T TIGR02760 1142 RAVSL 1146 (1960)
T ss_pred EEEEe
Confidence 55543
No 268
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.33 E-value=0.35 Score=59.09 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..++..+...+..+.-++-.|++||.|+|||.++...+
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 666666665555444445557899999999999875444
No 269
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.33 Score=58.11 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|...+..+.+.+..+..++-.|++||.|+|||.++-..+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 555555555444344445567889999999999875544
No 270
>PRK06893 DNA replication initiation factor; Validated
Probab=95.30 E-value=0.15 Score=53.84 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=23.4
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.++++||+|+|||-.+...+-....++..+.++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 4689999999999765544444445566665543
No 271
>PTZ00293 thymidine kinase; Provisional
Probab=95.26 E-value=0.082 Score=55.17 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=33.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
|+--+++||++||||.-.+..+......+++++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 455688999999999989998888888899999999964
No 272
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.25 E-value=0.064 Score=53.97 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=36.6
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
++|.|++|+|||..++..+...+.+|..++++... +-..++.+++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHH
Confidence 68999999999999888888777888889888643 445566666553
No 273
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.25 E-value=0.33 Score=55.13 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=68.6
Q ss_pred CCcEEEEccCCCccHHHHH-HHHHHH-HhCCCEEEEEc-c-cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL-RAIFCV-VSAGKQAMVLA-P-TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val-~a~~~~-~~~g~qvlVLv-P-tr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
++-+.++||||.|||+... +++... ....++|.++. - -|.=|..+.....+.+ ++.+.++.... +-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im----~vp~~vv~~~~---el~~a 275 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIM----GVPLEVVYSPK---ELAEA 275 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHh----CCceEEecCHH---HHHHH
Confidence 6788999999999999843 333333 23345555544 2 3444444444444433 44454444321 11111
Q ss_pred HHhHhcCCcceEecchHhhhcccccccccEEEeccccccch--hhHHHHHhh---c-CCceEEEeecCCChhhHHHHHhc
Q 003268 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASF---K-ISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 379 l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~--~~~e~l~~~---~-~~~~vL~lSATp~p~tl~~~~~~ 452 (835)
+ ..+.++++|.||=+-+--. ...+.++.+ . ..-..|.+|||..-+.+......
T Consensus 276 i---------------------~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 276 I---------------------EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred H---------------------HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 1 2356778888888766321 222333333 2 23346789999877777666555
Q ss_pred CCC
Q 003268 453 FRD 455 (835)
Q Consensus 453 ~~d 455 (835)
++.
T Consensus 335 f~~ 337 (407)
T COG1419 335 FSL 337 (407)
T ss_pred hcc
Confidence 443
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.6 Score=53.66 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=33.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH-HhCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~-~~~g~qvlVLv--Ptr~La~Q~~~~~~~ 353 (835)
+.-++++||+|+|||.++...+... ...|.+|+++. +-|..+..+..+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHH
Confidence 3457899999999999986665443 45577776554 445656554444443
No 275
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.48 Score=57.23 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+.+.+..+.-+.-.|++|+.|+|||..+...+-
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6666666665554444445569999999999998765543
No 276
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.19 E-value=0.26 Score=52.98 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
..++++.||+|+|||.++-..
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 467899999999999987443
No 277
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.17 E-value=0.036 Score=67.64 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ..+++|.|..|||||.+.+.-+...+.. ...+++++.|+..|.++.+++.+.++
T Consensus 1 ~Ln~~Q~~av~~~---------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 1 KLNPQQQEAVEYV---------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3789999996431 3478999999999999987777666642 25789999999999999999987665
Q ss_pred CC--CCcEEEEecCC
Q 003268 357 KY--PDIKVGLLSRF 369 (835)
Q Consensus 357 ~~--~gi~V~~l~g~ 369 (835)
.. .++.|..+|++
T Consensus 72 ~~~~~~v~v~TfHs~ 86 (664)
T TIGR01074 72 KGEARGLTISTFHTL 86 (664)
T ss_pred ccccCCeEEEeHHHH
Confidence 32 24566666654
No 278
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.16 E-value=0.13 Score=68.32 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=79.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH--HHHHHHHH--hCCCEEEEEcccHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVV--SAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va--l~a~~~~~--~~g~qvlVLvPtr~La~Q~~ 348 (835)
.+.....+.+++.|++|+..++.. ...-.+|.|..|+|||.+. +..++..+ ..+..++.++||---|..+
T Consensus 959 ~~~~~~~~~Lt~~Q~~Av~~il~s-----~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L- 1032 (1747)
T PRK13709 959 RVPGELMEGLTSGQRAATRMILES-----TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM- 1032 (1747)
T ss_pred hHHHHhcCCCCHHHHHHHHHHHhC-----CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH-
Confidence 334444568999999999998751 1356899999999999873 33333332 2356789999998777653
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh
Q 003268 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF 428 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~ 428 (835)
.+ . |+....++++....+. ...++ .......++|||||+=.++..+...+...
T Consensus 1033 ---~e-~----Gi~A~TI~s~L~~~~~-----~~~~~--------------~~~~~~~~llIVDEaSMv~~~~m~~Ll~~ 1085 (1747)
T PRK13709 1033 ---RS-A----GVDAQTLASFLHDTQL-----QQRSG--------------ETPDFSNTLFLLDESSMVGNTDMARAYAL 1085 (1747)
T ss_pred ---Hh-c----CcchhhHHHHhccccc-----ccccc--------------cCCCCCCcEEEEEccccccHHHHHHHHHh
Confidence 22 1 4443333332110000 00000 01112347999999999887665554433
Q ss_pred -c-CCceEEEeecC
Q 003268 429 -K-ISVDVLTLSAT 440 (835)
Q Consensus 429 -~-~~~~vL~lSAT 440 (835)
. .+.++|++-=+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 2 35676665433
No 279
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.14 Score=61.42 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
|..++..+.+.+..+.-+.-.|++|+.|+|||..+...+-..
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 555555555444344445557999999999999876554433
No 280
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.096 Score=57.57 Aligned_cols=90 Identities=16% Similarity=0.350 Sum_probs=71.4
Q ss_pred HHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc
Q 003268 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 323 a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~ 402 (835)
.+-+....|..+++.+|+.+..+|.+..+++.+ |..+++.+++. ...+.+..+.+++|..+|+|+| ..|-+.+.
T Consensus 297 ~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~---~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTT-TILERGVT 370 (441)
T COG4098 297 WLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL---PKETIASVHSE--DQHRKEKVEAFRDGKITLLITT-TILERGVT 370 (441)
T ss_pred HHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC---Cccceeeeecc--CccHHHHHHHHHcCceEEEEEe-ehhhcccc
Confidence 333445668899999999999999999887654 44677777773 2355667788899999999999 46667789
Q ss_pred cccccEEEeccccccc
Q 003268 403 YNNLGLLVVDEEQRFG 418 (835)
Q Consensus 403 ~~~l~lVIIDEaHr~g 418 (835)
|.++++.|++-.|+.-
T Consensus 371 fp~vdV~Vlgaeh~vf 386 (441)
T COG4098 371 FPNVDVFVLGAEHRVF 386 (441)
T ss_pred cccceEEEecCCcccc
Confidence 9999999999999853
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.6 Score=53.02 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=28.1
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+..++++||+|+|||..+...+......+.+|.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3567889999999999987666655556677776654
No 282
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.08 E-value=0.23 Score=61.23 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcE-EEEccCCCccHHHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDR-LICGDVGFGKTEVALR 322 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~-LI~g~TGsGKT~val~ 322 (835)
+..|.+.|..++.....+..+.++ +|+|+||+|||.+.-.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS 800 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH
Confidence 677778777777654443444555 5999999999988543
No 283
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.08 E-value=0.3 Score=55.47 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
+..|.+.+...+.+...+..+.+++|+|++|+|||.+.-..+
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~ 76 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVF 76 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 355656666555443334556789999999999998754433
No 284
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.06 E-value=0.15 Score=59.32 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=25.0
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~La~Q 346 (835)
..++++|++|+|||..+-..+-..... +..++++ +...+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHH
Confidence 458999999999997653333333333 4556555 33344433
No 285
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.01 E-value=0.29 Score=48.87 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
|.+++..+......+.-+...|++||.|+||+..+...+...+
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 6677776666554555567789999999999998766555443
No 286
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.96 E-value=0.29 Score=54.47 Aligned_cols=52 Identities=25% Similarity=0.283 Sum_probs=33.4
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc-c-cHHHHHHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA-P-TIVLAKQHFDVVSE 353 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv-P-tr~La~Q~~~~~~~ 353 (835)
.+.-++++||+|+|||+.+...+......+++|+++. . .+..+.+....+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~ 166 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGE 166 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHH
Confidence 3567888999999999987555544445677777764 3 34444333334433
No 287
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.96 E-value=0.23 Score=59.43 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
.|..++..+...+..+..++..|++||.|+|||..|...+-..
T Consensus 20 GQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 20 GQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3555665555544344445568999999999999876554433
No 288
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.96 E-value=0.5 Score=52.80 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
.|..++..+...+..+..++..|++||.|+|||..+...+
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 18 GQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3556666665555444445668999999999998764433
No 289
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.22 Score=60.02 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
.|..++..+...+..+..+...|++||.|+|||.++...+
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHH
Confidence 3666666665555443444557999999999999875544
No 290
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.8 Score=51.98 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
.-+..|...+..++.....+..|.++++.|+||+|||.+.-..+
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHH
Confidence 34677877777777766677778899999999999998854333
No 291
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.93 E-value=0.046 Score=67.44 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.|+|.|++|+... ...++|.|..|||||.+...-+...+.. ..++|+|+-|+..|.++.+++.+.++
T Consensus 9 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP---------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999997532 2468999999999999977666655542 35799999999999999999988665
Q ss_pred CC-CCcEEEEecC
Q 003268 357 KY-PDIKVGLLSR 368 (835)
Q Consensus 357 ~~-~gi~V~~l~g 368 (835)
.. .++.|+.+|+
T Consensus 80 ~~~~~~~i~TfHs 92 (721)
T PRK11773 80 TSQGGMWVGTFHG 92 (721)
T ss_pred cCCCCCEEEcHHH
Confidence 32 2456666655
No 292
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.93 E-value=0.044 Score=67.52 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.|+|.|++|+... ...++|.|..|||||.+...-+...+.. ..++|+++.|+..|..+.+++.+.++
T Consensus 4 ~Ln~~Q~~av~~~---------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAAP---------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcCC---------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999997431 2468999999999999977666655543 35899999999999999999988665
Q ss_pred CC-CCcEEEEecC
Q 003268 357 KY-PDIKVGLLSR 368 (835)
Q Consensus 357 ~~-~gi~V~~l~g 368 (835)
.. .++.|+.+|+
T Consensus 75 ~~~~~~~i~TfHs 87 (715)
T TIGR01075 75 TSARGMWIGTFHG 87 (715)
T ss_pred ccccCcEEEcHHH
Confidence 32 2456666554
No 293
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.92 E-value=0.15 Score=55.53 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=25.2
Q ss_pred HHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC
Q 003268 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330 (835)
Q Consensus 290 I~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~ 330 (835)
+|.+..++.+.++| -+||.||||||||+.. .++...+..
T Consensus 113 lP~i~~~~~~~~~G-LILVTGpTGSGKSTTl-AamId~iN~ 151 (353)
T COG2805 113 LPPIVRELAESPRG-LILVTGPTGSGKSTTL-AAMIDYINK 151 (353)
T ss_pred CCHHHHHHHhCCCc-eEEEeCCCCCcHHHHH-HHHHHHHhc
Confidence 34455556555554 4889999999999863 344445444
No 294
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.23 Score=59.03 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..++..+...+..+.-+.-.|++||.|+|||..+...+
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 555555554444333334456899999999998875544
No 295
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.67 Score=54.61 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
-|..++..+...+..+.-+.-.|++||.|+|||.++...+
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILA 59 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4667766666655443333446789999999998875544
No 296
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.47 Score=55.92 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=60.6
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLv--Ptr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~ 377 (835)
.+..+.++|++|+|||..+...+...... ++++.++. +.+..+.++.... +...++.+..... ..+-..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~y----a~iLgv~v~~a~d---~~~L~~ 421 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSY----GRQLGIAVHEADS---AESLLD 421 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHh----hcccCceeEecCc---HHHHHH
Confidence 35678899999999999864444333332 34555543 3344343322222 2222333322211 111000
Q ss_pred HHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchh-----hHHHHHhhcCCceEEEeecCCChhhHH
Q 003268 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVK-----QKEKIASFKISVDVLTLSATPIPRTLY 447 (835)
Q Consensus 378 ~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~-----~~e~l~~~~~~~~vL~lSATp~p~tl~ 447 (835)
.|. .+.++++||||.+-+.... +...+........+|++++++....+.
T Consensus 422 ------------------aL~---~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 422 ------------------LLE---RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred ------------------HHH---HhccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 111 2456789999998764221 112233333456788889998655544
No 297
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.83 E-value=0.28 Score=54.25 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=43.7
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc--cHHHHHHHHHHHHHhh
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TIVLAKQHFDVVSERF 355 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP--tr~La~Q~~~~~~~~f 355 (835)
.+|.-+|++|..|+|||+..--.+.....+|++|++.+- -|+-|.++.+.+.++.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~ 193 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL 193 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh
Confidence 447788999999999999977667777788999988773 5677777777777764
No 298
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.83 E-value=0.22 Score=53.64 Aligned_cols=69 Identities=20% Similarity=0.146 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
...+..++..+......-+.+.++++.|++|+|||..+...+...+..|..|++ +++.+|+.++...+.
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f-~~~~el~~~Lk~~~~ 153 (254)
T COG1484 85 PGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLF-ITAPDLLSKLKAAFD 153 (254)
T ss_pred cchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEE-EEHHHHHHHHHHHHh
Confidence 345555555554322122357899999999999998876666666655666554 677777776555443
No 299
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.78 E-value=0.19 Score=57.72 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=22.2
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA 338 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLv 338 (835)
..++++|++|+|||..+...+-..... +..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 457899999999997653332222222 45666653
No 300
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.76 E-value=0.019 Score=58.25 Aligned_cols=122 Identities=17% Similarity=0.193 Sum_probs=55.0
Q ss_pred EEEccCCCccHHHHHHHHHHHHhCC-CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcC
Q 003268 307 LICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG 385 (835)
Q Consensus 307 LI~g~TGsGKT~val~a~~~~~~~g-~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g 385 (835)
+|.|+=|-|||.+.-+++...+..+ .+++|.+|+..-++..++.+...+... +.+. ...........+...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~-------~~~~~~~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKE-------EKKKRIGQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccc-cccc-------ccccccccccccccc
Confidence 5789999999987655544444444 479999999987777665544322222 1221 000000011112223
Q ss_pred CcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcCCceEEEeecCC
Q 003268 386 HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 386 ~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp 441 (835)
...|-+-.|..+... -...++||||||=-+.......+. .....++||.|.
T Consensus 73 ~~~i~f~~Pd~l~~~--~~~~DlliVDEAAaIp~p~L~~ll---~~~~~vv~stTi 123 (177)
T PF05127_consen 73 KQRIEFVAPDELLAE--KPQADLLIVDEAAAIPLPLLKQLL---RRFPRVVFSTTI 123 (177)
T ss_dssp CCC--B--HHHHCCT------SCEEECTGGGS-HHHHHHHH---CCSSEEEEEEEB
T ss_pred cceEEEECCHHHHhC--cCCCCEEEEechhcCCHHHHHHHH---hhCCEEEEEeec
Confidence 456777777766532 124689999999988887666653 233456778785
No 301
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.74 E-value=0.18 Score=61.48 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=73.7
Q ss_pred HhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccccccccc
Q 003268 328 VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLG 407 (835)
Q Consensus 328 ~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~ 407 (835)
...+.+++|+++|+.-+..+.+.+.+ . |+++.++++..+..++...+..++.|.++|+||| +.+...+.+.+++
T Consensus 443 ~~~g~~viIf~~t~~~ae~L~~~L~~----~-gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-~~L~rGfdlp~v~ 516 (652)
T PRK05298 443 VAKGERVLVTTLTKRMAEDLTDYLKE----L-GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDIPEVS 516 (652)
T ss_pred HhCCCEEEEEeCCHHHHHHHHHHHhh----c-ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-CHHhCCccccCCc
Confidence 45688999999999888887777665 2 7899999999888899999999999999999999 5677788899999
Q ss_pred EEEeccccccch
Q 003268 408 LLVVDEEQRFGV 419 (835)
Q Consensus 408 lVIIDEaHr~g~ 419 (835)
+||+=|++.||+
T Consensus 517 lVii~d~eifG~ 528 (652)
T PRK05298 517 LVAILDADKEGF 528 (652)
T ss_pred EEEEeCCccccc
Confidence 999888888776
No 302
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.29 Score=54.40 Aligned_cols=48 Identities=31% Similarity=0.380 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
.++|+|..++..+...+..+.-+.-.|+.||.|.||+..+...+...+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 567999999999988765555566789999999999998765544443
No 303
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.68 E-value=0.035 Score=66.31 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHH-HHHHHhhcCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF-DVVSERFSKY 358 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~-~~~~~~f~~~ 358 (835)
+.+|+|.+-++.+. .+.-..+.+++++-+|||++.+..+...+.. ...++++.||..+|..+. .+|...+...
T Consensus 16 ~~~Py~~eimd~~~-----~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 16 DRTPYLREIMDALS-----DPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCChhHHHHHHhcC-----CcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 88999998877663 2335689999999999999877776655543 457999999999999887 4566555554
Q ss_pred CCcEEEEecCCCCHHHHHH-HHHhHhcCCcceEecc--hHhhhcccccccccEEEecccccc
Q 003268 359 PDIKVGLLSRFQSKAEKEE-HLDMIKHGHLNIIVGT--HSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~-~l~~l~~g~~dIIIgT--~~~L~~~l~~~~l~lVIIDEaHr~ 417 (835)
|.++-. +....+...... ..+.+. |..=.+++. +..|. -..+.+|++||++++
T Consensus 91 p~l~~~-~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~l~----s~~~r~~~~DEvD~~ 146 (557)
T PF05876_consen 91 PVLRRK-LSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSNLR----SRPARYLLLDEVDRY 146 (557)
T ss_pred HHHHHH-hCchhhcccCCchhheecC-CCEEEEEeCCCCcccc----cCCcCEEEEechhhc
Confidence 433311 111000001111 112222 322223332 33332 346789999999998
No 304
>PLN03025 replication factor C subunit; Provisional
Probab=94.67 E-value=0.25 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=19.1
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
+...++|++||.|+|||..+...+-.
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33346899999999999876554433
No 305
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.27 Score=59.09 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..++..+...+..+.-++-.|++||.|+|||.++...+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~la 59 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILA 59 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 555555555544343445567999999999999875544
No 306
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.18 Score=60.86 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
-|..++..+.+.+..+.-+...|++||.|+|||.++...+-.
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 366776666665544344556899999999999987655433
No 307
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.61 E-value=0.79 Score=50.68 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+...+ ..+....++++||+|+|||..+...+-
T Consensus 20 ~~~~~~~L~~~~-~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 20 QDEVVERLSRAV-DSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred CHHHHHHHHHHH-hCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 334444443322 223323699999999999987654443
No 308
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.61 E-value=0.28 Score=55.07 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
+..|.+.+...+.....+..+.+++|+||+|+|||.+.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 45566666666554333455678999999999999775
No 309
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.60 E-value=0.14 Score=63.60 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=38.5
Q ss_pred EECCcCccCCCCCC----------------------c----------CEEEEecCCCCCHhHHHH--HhcccCCCCCceE
Q 003268 549 ICTNIVESGLDIQN----------------------A----------NTIIVQDVQQFGLAQLYQ--LRGRVGRADKEAH 594 (835)
Q Consensus 549 VaT~iie~GIDIp~----------------------v----------~~VIi~d~p~~sl~~l~Q--r~GRaGR~g~~G~ 594 (835)
|+|...+.|+|+|. + ++||.|++.. +.---+| ++||.|| ++.
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~-sfIR~IEvyra~r~~r---~~r 506 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDI-SFIRQLEVYKASRPLR---PLR 506 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCCh-HHHHHHHHHHccCCCC---CcE
Confidence 77888899999996 4 8999999764 4433345 5666655 488
Q ss_pred EEEEecCCCc
Q 003268 595 AYLFYPDKSL 604 (835)
Q Consensus 595 ay~l~~~~~~ 604 (835)
+|+++..+..
T Consensus 507 VyfL~y~~S~ 516 (814)
T TIGR00596 507 VYFLYYGGSI 516 (814)
T ss_pred EEEEEECCcH
Confidence 9999987754
No 310
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.67 Score=55.55 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+...+..+.-++-.|++||.|+|||.++...+-
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6666666666554444455689999999999998755443
No 311
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.56 E-value=0.97 Score=54.81 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
.|..+...+...+..+.-....|++||.|+|||..+...+-.
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 466666666554433333456799999999999987555443
No 312
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.52 E-value=0.27 Score=48.08 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHhhcCC-eeEEEECCcCccCCCCCC--cCEEEEecCC
Q 003268 527 QQYSRQLEETMEKFAQGA-IKILICTNIVESGLDIQN--ANTIIVQDVQ 572 (835)
Q Consensus 527 ~m~~~ere~vl~~F~~g~-~~VLVaT~iie~GIDIp~--v~~VIi~d~p 572 (835)
+....+...+++.|.+.. ..||++|.-+..|||+|+ +++||+...|
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 344556788999998754 379999988999999996 5688887766
No 313
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.51 Score=56.79 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
|..++..+.+.+.++.-....|++||.|+|||.++...+-.
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 44444444443433333567889999999999998655433
No 314
>PRK05642 DNA replication initiation factor; Validated
Probab=94.40 E-value=0.42 Score=50.70 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=22.6
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
..++++|++|+|||-.+...+......+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 56889999999999763322222334466666654
No 315
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.19 Score=58.19 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=77.9
Q ss_pred HHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccccccc
Q 003268 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 405 (835)
Q Consensus 326 ~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~ 405 (835)
..+..+-+++|.+=|+-+|.++.+-+.+. |++|.++|+..+.-++.++++.++.|.+||+||- .+|...+.+..
T Consensus 441 ~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-NLLREGLDiPE 514 (663)
T COG0556 441 KRVAKNERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLPE 514 (663)
T ss_pred HHHhcCCeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-hhhhccCCCcc
Confidence 34566889999999998888877777663 8999999999999999999999999999999996 68888899999
Q ss_pred ccEEEeccccccch
Q 003268 406 LGLLVVDEEQRFGV 419 (835)
Q Consensus 406 l~lVIIDEaHr~g~ 419 (835)
+++|.|=.||.-|+
T Consensus 515 VsLVAIlDADKeGF 528 (663)
T COG0556 515 VSLVAILDADKEGF 528 (663)
T ss_pred eeEEEEeecCcccc
Confidence 99999999998776
No 316
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.38 E-value=0.18 Score=60.50 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=68.1
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.++||.|+|+..+.++++.+... ++.+..+++..+..++...++.+.+|+++|+|+|. .+...+++.++++
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-v~arGIDip~V~~ 328 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-VAARGLHIDGVKY 328 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-hhhcCCCccCCCE
Confidence 34678999999999999999888753 68899999999999999999999999999999994 5666788889998
Q ss_pred EEecc
Q 003268 409 LVVDE 413 (835)
Q Consensus 409 VIIDE 413 (835)
||.-+
T Consensus 329 VInyd 333 (572)
T PRK04537 329 VYNYD 333 (572)
T ss_pred EEEcC
Confidence 88643
No 317
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=94.34 E-value=0.073 Score=52.67 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=41.8
Q ss_pred CCCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCC--cccChhhh
Q 003268 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGM--AKLPVKQA 204 (835)
Q Consensus 152 ~~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~~~~~~~y~~~~--~~~~~~~~ 204 (835)
..+++||.||=..||.|...+|+...- .|+..+|.+|.|..++ ..+|+..+
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~--~Ge~~~yyVI~f~~~dm~v~VP~~ka 55 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEI--AGETLEYYVIDFPQSDMTVMVPVAKA 55 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhh--cCceeEEEEEEEcCCCcEEEeeccch
Confidence 467899999999999999999974322 3789999999999886 45788765
No 318
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.32 E-value=0.25 Score=54.02 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhC-C-CEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSA-G-KQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~-g-~qvlVLv 338 (835)
.+..++++||||+|||..+...+...... | .+|.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 35578899999999999876555444433 4 5666554
No 319
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.32 E-value=0.42 Score=53.40 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
.+|+|...+..+.+ .+.-+.-.|++||.|.|||..+...+-..
T Consensus 4 ~yPWl~~~~~~~~~---~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 4 IYPWQQSLWQQLAG---RGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred CCCCcHHHHHHHHH---CCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 46899999998876 33445678999999999998876554433
No 320
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.31 E-value=0.23 Score=57.44 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLv--Ptr~La~Q~~~~~~~ 353 (835)
+.-++++|++|+|||+++...+.... ..|.+++++. +.|..+.++.+.+..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~ 152 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQ 152 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHH
Confidence 56788999999999999766665543 4577776665 344445444444443
No 321
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.26 E-value=0.79 Score=52.95 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=34.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv--Ptr~La~Q~~~~~~~ 353 (835)
+.-++++|++|+|||+.+...+......|.+|+++. |.|.-|.++.+.+.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 456789999999999887655544445677777765 345555555454444
No 322
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.19 E-value=0.24 Score=48.56 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCe---eEEEECCc--CccCCCCCC--cCEEEEecCC
Q 003268 532 QLEETMEKFAQGAI---KILICTNI--VESGLDIQN--ANTIIVQDVQ 572 (835)
Q Consensus 532 ere~vl~~F~~g~~---~VLVaT~i--ie~GIDIp~--v~~VIi~d~p 572 (835)
+...+++.|.+..- .||+|+.- +.+|||+|+ +++||+...|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 45788888987543 68888876 999999997 6788887776
No 323
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.08 E-value=0.36 Score=58.45 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|..++..+...+..+.-+.-.|++||.|+|||.++...+
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lA 60 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFA 60 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHH
Confidence 666666666655444445568999999999999764443
No 324
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.08 E-value=0.64 Score=50.85 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
+.++++.||+|+|||.+|-..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 357999999999999987433
No 325
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.07 E-value=0.36 Score=48.27 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=28.5
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.|..++|.|||.+++-.++.++..|.+|+++.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 556677799999999999999999999999954
No 326
>PTZ00110 helicase; Provisional
Probab=94.07 E-value=0.24 Score=59.15 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=70.2
Q ss_pred HHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc
Q 003268 321 LRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 399 (835)
Q Consensus 321 l~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~ 399 (835)
+..++..+. .+.++||.|+++.-|..++..+... ++.+..+++..+..++...++.+++|..+|+|+|. .+..
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-v~~r 439 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-VASR 439 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-hhhc
Confidence 344444433 6789999999999999988888642 67889999999999999999999999999999995 5666
Q ss_pred ccccccccEEEe
Q 003268 400 RVVYNNLGLLVV 411 (835)
Q Consensus 400 ~l~~~~l~lVII 411 (835)
.+++.++.+||.
T Consensus 440 GIDi~~v~~VI~ 451 (545)
T PTZ00110 440 GLDVKDVKYVIN 451 (545)
T ss_pred CCCcccCCEEEE
Confidence 788889999885
No 327
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.07 E-value=1.5 Score=47.76 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=62.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc--cH-HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP--TI-VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHL 379 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP--tr-~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l 379 (835)
+..++++|++|+|||..+...+......+..+.++.- .+ ..+.|+..... .+ ++.+.... +...-...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~-~~----~~~~~~~~---~~~~l~~~l 146 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVK-TI----GFEVIAVR---DEAAMTRAL 146 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhh-hc----CceEEecC---CHHHHHHHH
Confidence 4678999999999999875554444445666665543 22 45555543322 11 33333221 111111111
Q ss_pred HhHhcCCcceEecchHhhhcccccccccEEEeccccccc--hhhHHHHH----hhcCCceEEEeecCCChhhHHHH
Q 003268 380 DMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VKQKEKIA----SFKISVDVLTLSATPIPRTLYLA 449 (835)
Q Consensus 380 ~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g--~~~~e~l~----~~~~~~~vL~lSATp~p~tl~~~ 449 (835)
..+. ...++++||||-+=+.- ....+.+. ...+...++.+|||.........
T Consensus 147 ~~l~------------------~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 147 TYFK------------------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred HHHH------------------hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 1111 12357889999886642 22222222 22344457789999766554333
No 328
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.05 E-value=0.45 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=18.3
Q ss_pred CCCCcEEEEccCCCccHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a 323 (835)
..+..++++||+|+|||..+...
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 34567999999999999876543
No 329
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.86 Score=51.71 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
-|.++...+.+.+..+.-+.-.|++||.|+||+..+...+-..+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 47778777777665555566799999999999998766555444
No 330
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.99 E-value=1.2 Score=52.84 Aligned_cols=40 Identities=23% Similarity=0.106 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..+...+...+..+.-++-.|++||.|+|||.++...+-
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHH
Confidence 5555555555554444455568999999999988754443
No 331
>PRK13767 ATP-dependent helicase; Provisional
Probab=93.98 E-value=0.26 Score=62.21 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=72.7
Q ss_pred HHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC-CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc
Q 003268 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK-YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~-~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~ 402 (835)
+...+..+++++|.|+|+..|..++..+++.+.. +.+..+..+||..+..++....+.+++|..+|+|||.. |...++
T Consensus 277 L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-Le~GID 355 (876)
T PRK13767 277 LHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-LELGID 355 (876)
T ss_pred HHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-HHhcCC
Confidence 3344566889999999999999999998875542 12467999999999999999999999999999999964 555688
Q ss_pred cccccEEEecc
Q 003268 403 YNNLGLLVVDE 413 (835)
Q Consensus 403 ~~~l~lVIIDE 413 (835)
+.++++||.-.
T Consensus 356 ip~Vd~VI~~~ 366 (876)
T PRK13767 356 IGYIDLVVLLG 366 (876)
T ss_pred CCCCcEEEEeC
Confidence 88999998643
No 332
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.93 E-value=0.52 Score=49.55 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=21.5
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHH---hCCCEEEEEc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLA 338 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~---~~g~qvlVLv 338 (835)
..++|+|++|+|||-. +.++...+ ..+.+|+++.
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEE
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeec
Confidence 3589999999999974 44444332 2355666654
No 333
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.92 E-value=0.17 Score=58.32 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=66.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
...+++|.++++.-+..+++.+... |+++..++|..+..++...++.+.+|+++|+|+|. .+...+++.++++|
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-v~~rGiDip~v~~V 327 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-VAARGLHIPAVTHV 327 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-hhhcCCCccccCEE
Confidence 3578999999999999888888653 68999999999999999999999999999999994 56667888888888
Q ss_pred Eecc
Q 003268 410 VVDE 413 (835)
Q Consensus 410 IIDE 413 (835)
|.-+
T Consensus 328 I~~d 331 (423)
T PRK04837 328 FNYD 331 (423)
T ss_pred EEeC
Confidence 7543
No 334
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.84 E-value=0.31 Score=57.14 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=67.4
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..++.++|.++++.-+.++++.+... |+.+..++++.+..++...++...+|.++|+|+|. .+...+++.++++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~-----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-~~~~GID~p~V~~ 297 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNL-----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-AFGMGINKPDVRF 297 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhc-----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-hhhccCCcccceE
Confidence 45778899999999999998888753 78899999999999999999999999999999995 5666788888888
Q ss_pred EEec
Q 003268 409 LVVD 412 (835)
Q Consensus 409 VIID 412 (835)
||.-
T Consensus 298 VI~~ 301 (470)
T TIGR00614 298 VIHY 301 (470)
T ss_pred EEEe
Confidence 8854
No 335
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.84 E-value=0.71 Score=51.50 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
.+|+|..++..+.+.+..+.-+.-.|++||.|.||+..+...+-..+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 46889999888887765545567788999999999998765554443
No 336
>PRK12377 putative replication protein; Provisional
Probab=93.82 E-value=0.93 Score=48.68 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHH---HhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 283 TPDQKKAFLDVE---RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 283 tp~Q~~AI~~Il---~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
++.|..|+..+. ..+.. ...+++++|++|+|||-.+...+-.....|..|+++ +...|..++..
T Consensus 80 ~~~~~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~ 146 (248)
T PRK12377 80 NDGQRYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHE 146 (248)
T ss_pred ChhHHHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHH
Confidence 466766665433 23321 235799999999999987655555555667666554 55566665544
No 337
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=93.72 E-value=0.3 Score=56.94 Aligned_cols=75 Identities=17% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
..+++|.++++.-+..+++.+... ++.+..+++..+..++...++.+++|+++|+|+|. .+...+++.++++||
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-v~~rGiDip~v~~VI 318 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-IAARGLDIEELPHVV 318 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-HHhcCCCcccCCEEE
Confidence 468999999999999888888653 68899999999999999999999999999999995 566678888888877
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 319 ~ 319 (456)
T PRK10590 319 N 319 (456)
T ss_pred E
Confidence 3
No 338
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.66 E-value=0.86 Score=53.10 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=24.4
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
..++++|++|+|||-.+-..+-.....+..++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 458999999999997654333333345677777653
No 339
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.61 E-value=0.46 Score=52.35 Aligned_cols=19 Identities=42% Similarity=0.343 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+.-++++||+|+|||..+.
T Consensus 43 ~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 4445558999999998653
No 340
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.59 E-value=0.15 Score=64.13 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=82.8
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHH------------------hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcE
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVV------------------SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIK 362 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~------------------~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~ 362 (835)
..+.+.+..-..|.|||..-+...+... ..-+.+||++|.. +..||..++...... +++
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~--~lK 448 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISS--LLK 448 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccc--cce
Confidence 4467788888999999987543322110 1135689999985 456999998764332 467
Q ss_pred EEEecCCCCH--HHHHHHHHhHhcCCcceEecchHhhhcccccc-----------------------ccc--EEEecccc
Q 003268 363 VGLLSRFQSK--AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYN-----------------------NLG--LLVVDEEQ 415 (835)
Q Consensus 363 V~~l~g~~s~--~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~-----------------------~l~--lVIIDEaH 415 (835)
|..+-|-... .+. ..+ -.+|||++|+..|...+.+. .+. -|++||||
T Consensus 449 v~~Y~Girk~~~~~~-~el-----~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQ 522 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSP-FEL-----LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQ 522 (1394)
T ss_pred EEEEechhhhcccCc-hhh-----hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHH
Confidence 7776663211 111 111 25899999998885422111 111 28999999
Q ss_pred ccch--hhHHHHHhhcCCceEEEeecCCChh
Q 003268 416 RFGV--KQKEKIASFKISVDVLTLSATPIPR 444 (835)
Q Consensus 416 r~g~--~~~e~l~~~~~~~~vL~lSATp~p~ 444 (835)
..-. .....+...-.....-+.|+||+.+
T Consensus 523 MvesssS~~a~M~~rL~~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 523 MVESSSSAAAEMVRRLHAINRWCVTGTPIQK 553 (1394)
T ss_pred hhcchHHHHHHHHHHhhhhceeeecCCchhh
Confidence 8632 2222233333556778899999876
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=93.58 E-value=0.38 Score=55.67 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=33.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEc--ccHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA--PTIVLAKQHFDVVS 352 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLv--Ptr~La~Q~~~~~~ 352 (835)
+.-++++|++|+|||+++...+...... |.+|+++. +.|.-+......+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a 152 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLG 152 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHH
Confidence 5668899999999999877666655555 77777664 45555443333333
No 342
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=93.54 E-value=0.041 Score=66.19 Aligned_cols=156 Identities=16% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH---HHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL---RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val---~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
-.+.|+|.+.++.+...+. .+.+.++..+.|.|||.+.+ .-.+.........|+++|.-..++- -..+.. .
T Consensus 294 g~L~~~qleGln~L~~~ws---~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nw-e~e~~~-w- 367 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWS---PGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNW-EREFEL-W- 367 (696)
T ss_pred ccccccchhhhhhhhcccc---cCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCC-CCchhc-c-
Confidence 4677999999888776553 35789999999999998632 2222333333456777876544431 112211 1
Q ss_pred CCCCcEEEEecCCCCHHHHHH------------------HHHhHhcCCcceEecchHhhhcc---cccccccEEEecccc
Q 003268 357 KYPDIKVGLLSRFQSKAEKEE------------------HLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQ 415 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~------------------~l~~l~~g~~dIIIgT~~~L~~~---l~~~~l~lVIIDEaH 415 (835)
.|...|....|......... .+..-..-..++...++++...+ +.--.++++|+||+|
T Consensus 368 -ap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~ 446 (696)
T KOG0383|consen 368 -APSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAH 446 (696)
T ss_pred -CCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEeechh
Confidence 12344444444221100000 00000111244555555444322 112367999999999
Q ss_pred ccchhhHHHHHhhcC--CceEEEeecCCC
Q 003268 416 RFGVKQKEKIASFKI--SVDVLTLSATPI 442 (835)
Q Consensus 416 r~g~~~~e~l~~~~~--~~~vL~lSATp~ 442 (835)
|+...+.+....+.. .-.-++++.||-
T Consensus 447 rlkn~~s~~f~~l~~~~~~~~~lltgtPl 475 (696)
T KOG0383|consen 447 RLKNKQSKRFRVLTAYPIDSKLLLTGTPL 475 (696)
T ss_pred hcccchhhhhhhccccccchhhhccCCcc
Confidence 998777666555432 234467888874
No 343
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.51 E-value=0.037 Score=64.48 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=57.2
Q ss_pred EEccCCCccHHHHHHHHHHHHhCCC-EEEEEcccHHHHHHHHHHHHHhhcC-C----------CCcEEEEecCCCCHHHH
Q 003268 308 ICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSK-Y----------PDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 308 I~g~TGsGKT~val~a~~~~~~~g~-qvlVLvPtr~La~Q~~~~~~~~f~~-~----------~gi~V~~l~g~~s~~e~ 375 (835)
..+.||||||.+....++.+...|. ..++.|.......-....|..-.+. + ..+.+.-+..+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse---- 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE---- 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc----
Confidence 3467999999998777777777774 4666776655555444443221110 0 0122222222211
Q ss_pred HHHHHhHhcCCcceEecchHhhhcc--------c---ccccccEE-Eeccccccc
Q 003268 376 EEHLDMIKHGHLNIIVGTHSLLGSR--------V---VYNNLGLL-VVDEEQRFG 418 (835)
Q Consensus 376 ~~~l~~l~~g~~dIIIgT~~~L~~~--------l---~~~~l~lV-IIDEaHr~g 418 (835)
.+..+.|+++|-+.|..+ + .+.+..+| +-||+|++.
T Consensus 78 -------hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 78 -------HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred -------cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 123488999998777532 1 24555554 559999973
No 344
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.51 E-value=0.33 Score=56.08 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=66.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
...+++|.++++.-+..+++.+... ++.+..++|..+..++...+..+++|.++|+|+|. .+...+++.++.+|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-~~~~GiDip~v~~V 317 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-VAARGIDIDDVSHV 317 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCccCCCCCEE
Confidence 3578999999999999988888752 68999999999999999999999999999999994 55666788888888
Q ss_pred Ee
Q 003268 410 VV 411 (835)
Q Consensus 410 II 411 (835)
|.
T Consensus 318 I~ 319 (434)
T PRK11192 318 IN 319 (434)
T ss_pred EE
Confidence 74
No 345
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.45 E-value=0.37 Score=51.79 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=35.8
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..+.-++|.|++|+|||..++..+...+.. |..|+++.-. .-..++..++..
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHH
Confidence 345678999999999999877766666555 7788887632 223445555544
No 346
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.42 E-value=1.1 Score=52.31 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcc
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAP 339 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvP 339 (835)
.+....|...+.+-..+......++++|++|+|||-.+-..+-..... +..++++..
T Consensus 110 g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 110 GPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 344444544443322111123468999999999997653322222222 456666643
No 347
>CHL00181 cbbX CbbX; Provisional
Probab=93.39 E-value=0.9 Score=49.83 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCccHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~ 324 (835)
+.++++.||+|+|||.+|-..+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999875443
No 348
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.35 E-value=0.59 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=18.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
+...|+.||.|+|||..+...+-.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 566899999999999987555433
No 349
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=93.33 E-value=0.66 Score=43.17 Aligned_cols=80 Identities=20% Similarity=0.392 Sum_probs=65.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.+++..-+.++++.+.+ ++..+..+++..+..++......+.++...|+++|. .+...+++...+.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~-~~~~G~d~~~~~~v 100 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-VIARGIDLPNVSVV 100 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC-hhhcCcChhhCCEE
Confidence 567899999999988888888765 257899999998888899999999999999999996 45556777777777
Q ss_pred Eecccc
Q 003268 410 VVDEEQ 415 (835)
Q Consensus 410 IIDEaH 415 (835)
|+....
T Consensus 101 i~~~~~ 106 (131)
T cd00079 101 INYDLP 106 (131)
T ss_pred EEeCCC
Confidence 776654
No 350
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.72 Score=52.11 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
.|..++..+...+..+..+...|++||.|+|||..+...
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 456666666665544445567999999999999876544
No 351
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.27 E-value=0.18 Score=54.28 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=32.1
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.+.-.+|+|++|+|||..++..+...+.+|..++++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44677899999999999998888777777788888887
No 352
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.24 E-value=0.67 Score=56.60 Aligned_cols=145 Identities=20% Similarity=0.152 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC--CEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG--KQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g--~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
..|.+|.+++..+..-+ +.+ ..-+++.|+=|=|||.++-+++..+...+ .+++|.+|+.+-++..++-....|...
T Consensus 211 ~~T~dQ~~~l~~~~~l~-~~~-~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~l 288 (758)
T COG1444 211 CLTEDQAEALEILERLL-DAP-KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFL 288 (758)
T ss_pred hcChhHHHHHHHHHHHH-cCC-CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHh
Confidence 56889999988776655 322 33788999999999998655443333333 589999999988877766555444332
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcCCceEEEee
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLS 438 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lS 438 (835)
|.+-.+..... .+ ..........|=+-+|..-. ..-++||||||=-++......+.. ..+.++||
T Consensus 289 -g~~~~v~~d~~--g~----~~~~~~~~~~i~y~~P~~a~-----~~~DllvVDEAAaIplplL~~l~~---~~~rv~~s 353 (758)
T COG1444 289 -GYKRKVAPDAL--GE----IREVSGDGFRIEYVPPDDAQ-----EEADLLVVDEAAAIPLPLLHKLLR---RFPRVLFS 353 (758)
T ss_pred -CCccccccccc--cc----eeeecCCceeEEeeCcchhc-----ccCCEEEEehhhcCChHHHHHHHh---hcCceEEE
Confidence 33211111000 00 00011111334444554332 116899999999888876655543 23567888
Q ss_pred cCCC
Q 003268 439 ATPI 442 (835)
Q Consensus 439 ATp~ 442 (835)
.|..
T Consensus 354 TTIh 357 (758)
T COG1444 354 TTIH 357 (758)
T ss_pred eeec
Confidence 8863
No 353
>PHA02533 17 large terminase protein; Provisional
Probab=93.23 E-value=0.88 Score=54.20 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH-HHHHH-HhCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR-AIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~-a~~~~-~~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
-|+.|.|+|...+..+.. .+-.++.-+=..|||.++.. ++..+ ...+.++++++|+..-|..+++.++..+
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~-------~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHK-------NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred eecCCcHHHHHHHHHHhc-------CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 378899999998877631 12345666778999998643 33333 3556799999999999999998888766
Q ss_pred cCCC
Q 003268 356 SKYP 359 (835)
Q Consensus 356 ~~~~ 359 (835)
...|
T Consensus 129 e~~P 132 (534)
T PHA02533 129 ELLP 132 (534)
T ss_pred HhCH
Confidence 5544
No 354
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=93.13 E-value=0.021 Score=63.84 Aligned_cols=43 Identities=28% Similarity=0.190 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
-.-||.+|.+||+-|+- +.|+|..++||||||-+|-+|+++.+
T Consensus 22 w~lptdvqaeaiplilg-------ggdvlmaaetgsgktgaf~lpilqiv 64 (725)
T KOG0349|consen 22 WTLPTDVQAEAIPLILG-------GGDVLMAAETGSGKTGAFCLPILQIV 64 (725)
T ss_pred cccccccccccccEEec-------CCcEEEEeccCCCCccceehhhHHHH
Confidence 34689999999999873 57999999999999999988887653
No 355
>PRK08116 hypothetical protein; Validated
Probab=93.05 E-value=0.99 Score=49.00 Aligned_cols=68 Identities=19% Similarity=0.202 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHH---Hhhhc-CCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVE---RDLTE-RETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il---~~l~~-~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
..++.|..|+..+. +.+.+ ...+..++++|++|+|||..+...+-.....+..++++ +...|..++..
T Consensus 88 ~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 88 LFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred cCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHH
Confidence 35677777665544 22221 11233599999999999987655444444556666555 44555555543
No 356
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.04 E-value=0.93 Score=50.81 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
++|+|..++..+.+.+..+.-+.-.|+.||.|.||+..+...+...
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 5689999999988776555567788899999999999876554433
No 357
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.00 E-value=0.33 Score=56.84 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=68.8
Q ss_pred HHHHHHHHh--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh
Q 003268 321 LRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG 398 (835)
Q Consensus 321 l~a~~~~~~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~ 398 (835)
+.+++.... .+.+++|.|-|+--|.++...++.. +.++..+||..+..++...++.+++|++.|+|+|.-. .
T Consensus 329 l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA-a 402 (519)
T KOG0331|consen 329 LGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA-A 402 (519)
T ss_pred HHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc-c
Confidence 344444443 4568999999999999988888753 4789999999999999999999999999999999633 3
Q ss_pred cccccccccEEEe
Q 003268 399 SRVVYNNLGLLVV 411 (835)
Q Consensus 399 ~~l~~~~l~lVII 411 (835)
+.+++.++++||-
T Consensus 403 RGLDi~dV~lVIn 415 (519)
T KOG0331|consen 403 RGLDVPDVDLVIN 415 (519)
T ss_pred ccCCCccccEEEe
Confidence 4567888888885
No 358
>PRK09183 transposase/IS protein; Provisional
Probab=93.00 E-value=0.58 Score=50.52 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=43.4
Q ss_pred CCCChHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHH
Q 003268 265 YPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La 344 (835)
||....++.|.-.+...+...|...+..+. + -..+.++++.||+|+|||..+...+..+...|..|+++. ...|.
T Consensus 68 ~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~--~--i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~ 142 (259)
T PRK09183 68 FPAVKTFEEYDFTFATGAPQKQLQSLRSLS--F--IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLL 142 (259)
T ss_pred CCCCCcHhhcccccCCCCCHHHHHHHhcCC--c--hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHH
Confidence 333334445443443344444444433221 1 234678999999999999887655555556787887664 33444
Q ss_pred H
Q 003268 345 K 345 (835)
Q Consensus 345 ~ 345 (835)
.
T Consensus 143 ~ 143 (259)
T PRK09183 143 L 143 (259)
T ss_pred H
Confidence 3
No 359
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.00 E-value=0.94 Score=46.00 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=20.0
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
.-+...|+.||.|+|||..+...+...
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 335678999999999998875544433
No 360
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.97 E-value=0.45 Score=59.81 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhc-------CCCCC-cEEEEccCCCccHHHHHHH
Q 003268 284 PDQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 284 p~Q~~AI~~Il~~l~~-------~~~~~-d~LI~g~TGsGKT~val~a 323 (835)
-.|..|+..+.+.+.. ..+|. .+|++||||+|||..+-..
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~L 616 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALAL 616 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 3577888777665421 22333 4799999999999987433
No 361
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.95 E-value=0.27 Score=61.87 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhc-------CCCC-CcEEEEccCCCccHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTE-------RETP-MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~-------~~~~-~d~LI~g~TGsGKT~val~a~ 324 (835)
-|..|+..+...+.. ..+| ..++++||||+|||+.+-..+
T Consensus 572 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa 619 (857)
T PRK10865 572 GQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA 619 (857)
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 577777776655432 1222 358999999999999874433
No 362
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.95 E-value=0.21 Score=55.65 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH---hCCCEEEEEcccHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLA 344 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~---~~g~qvlVLvPtr~La 344 (835)
..+...+. +++.|.+.+..+.. . +.++|++|+||||||+.. .+++..+ ..+.+++++-.+.+|.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~---~---~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAID---S---RLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHH---c---CCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 33444433 56788877776654 1 468999999999999763 5555554 2356777777777763
No 363
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=92.94 E-value=0.26 Score=58.97 Aligned_cols=111 Identities=20% Similarity=0.274 Sum_probs=81.9
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC-C---C------------CcEEEEcCCCCHHHHHHHHHHhhcC---CeeEEEECC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAF-P---G------------VDIAIAHGQQYSRQLEETMEKFAQG---AIKILICTN 552 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~-p---~------------~~V~~lHG~m~~~ere~vl~~F~~g---~~~VLVaT~ 552 (835)
|.++++|.......+.+.+.|...- | | .....+.|..+..+|++.++.|.+. ..-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 4456666666666666666665431 1 1 1334677888899999999999864 235789999
Q ss_pred cCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCc--eEEEEEecCCC
Q 003268 553 IVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKS 603 (835)
Q Consensus 553 iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~~ 603 (835)
....|||+-.++.+|++|+. |+...-.|.+-|+.|.|++ .++|.++-+..
T Consensus 799 ag~lGinLIsanr~~ifda~-wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~ 850 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDAC-WNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNS 850 (1387)
T ss_pred cccccceeeccceEEEEEee-cCccccchhhhhhhhhcCcCceeEEeehhhhh
Confidence 99999999999999999997 6888888999999999965 45555655443
No 364
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.89 E-value=1.3 Score=51.62 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=28.2
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHH---hCCCEEEEEcccHHHHHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~---~~g~qvlVLvPtr~La~Q~~~~~ 351 (835)
..++++|++|+|||-.+ .++...+ ..+.+++++.+ ..+..+....+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 45889999999999654 4444433 23567766554 44555444433
No 365
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.85 E-value=0.46 Score=56.38 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
..+++|.+.|+..+..++..+... |+++..+||..+..++.+.+..+++|..+|+|+|.-. ...+.+.++.+||
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva-aRGiDi~~v~~Vi 346 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKR-----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA-ARGLDIPDVSHVI 346 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHC-----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh-hccCCccccceeE
Confidence 347999999999999988877763 7899999999999999999999999999999999643 4556777777775
No 366
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.76 E-value=0.28 Score=54.09 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=42.5
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLA 344 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~La 344 (835)
..+.+.+. +++.|.+.+..+.+ ...+++++|+||||||..+ .+++..+.. +.+++++-.+.++.
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVL------ARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhc
Confidence 34444333 45677777666543 1468999999999999764 555555432 56788888877763
No 367
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.74 E-value=1 Score=50.34 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
.|..++..+...+..+.-+.-.|++||.|+|||..+...+-.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~ 51 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKS 51 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 366777777666644444566799999999999887554433
No 368
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.72 E-value=0.47 Score=48.83 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=33.8
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
..+++.+++|-|||.+++-.++.++..|.+|+++.=.+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 57999999999999999999999999999999986433
No 369
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=92.70 E-value=0.58 Score=53.40 Aligned_cols=120 Identities=21% Similarity=0.199 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEE
Q 003268 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG 364 (835)
Q Consensus 287 ~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~ 364 (835)
+++++.+.. -.+.+..+|+.|+||+||++.|-..-..... .++ .|-+.--+++...... +.| |+.-+
T Consensus 88 ~~~~eqik~---~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~P--FI~~NCa~~~en~~~~--eLF----G~~kG 156 (403)
T COG1221 88 QELREQIKA---YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAP--FIAFNCAAYSENLQEA--ELF----GHEKG 156 (403)
T ss_pred HHHHHHHHh---hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCC--EEEEEHHHhCcCHHHH--HHh----ccccc
Confidence 455666655 2366889999999999999987433322211 222 2222322222221111 134 44445
Q ss_pred EecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh-------------cCC
Q 003268 365 LLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF-------------KIS 431 (835)
Q Consensus 365 ~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~-------------~~~ 431 (835)
.++|..... +++ +..-+=|.+.+||.|++.....+++.++ ...
T Consensus 157 aftGa~~~k--------------------~Gl----fe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~ 212 (403)
T COG1221 157 AFTGAQGGK--------------------AGL----FEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRP 212 (403)
T ss_pred eeecccCCc--------------------Cch----heecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcC
Confidence 555521110 011 2234558899999999876555554432 134
Q ss_pred ceEEEeecCC
Q 003268 432 VDVLTLSATP 441 (835)
Q Consensus 432 ~~vL~lSATp 441 (835)
.+|-+.+||-
T Consensus 213 ~dVRli~AT~ 222 (403)
T COG1221 213 VDVRLICATT 222 (403)
T ss_pred CCceeeeccc
Confidence 5667777885
No 370
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.62 E-value=1.2 Score=49.14 Aligned_cols=40 Identities=15% Similarity=0.288 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
|..++..+...+..+.-++-.|++||-|+|||..+...+-
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~ 48 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAL 48 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHH
Confidence 5666666666554444556679999999999998755543
No 371
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.62 E-value=0.25 Score=64.59 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC---CEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g---~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
+|+.|.+||.. .+.+++|.|..|||||.+.+--+...+..+ .++++++=|+..|..+.+++.+.+..
T Consensus 2 ~t~~Q~~ai~~---------~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~ 71 (1232)
T TIGR02785 2 WTDEQWQAIYT---------RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQK 71 (1232)
T ss_pred CCHHHHHHHhC---------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHH
Confidence 68999999752 257899999999999999876666655544 36999999999999988888876543
No 372
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.56 E-value=0.42 Score=54.61 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=71.3
Q ss_pred EEEEccCCCccHHHHHHHHH-HHHh--CCCEEEEEcccHH-HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 306 RLICGDVGFGKTEVALRAIF-CVVS--AGKQAMVLAPTIV-LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~-~~~~--~g~qvlVLvPtr~-La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
.+++|..|||||.++...++ .++. .+.+++|+-|+.. |...++..+...+..+ |+....-....+. .+ .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~-----~i-~ 76 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM-----EI-K 76 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc-----EE-E
Confidence 67899999999998654444 4444 5778899989875 7777777777655544 3321111110000 00 0
Q ss_pred Hhc-CCcceEecch-HhhhcccccccccEEEeccccccchhhHHHH-HhhcC-Cc-eEEEeecCCCh
Q 003268 382 IKH-GHLNIIVGTH-SLLGSRVVYNNLGLLVVDEEQRFGVKQKEKI-ASFKI-SV-DVLTLSATPIP 443 (835)
Q Consensus 382 l~~-g~~dIIIgT~-~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l-~~~~~-~~-~vL~lSATp~p 443 (835)
+.. | ..|++..- ..-.+......++++.+||+..+.....+.+ .+++. .. ..+.+|.||..
T Consensus 77 ~~~~g-~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 77 ILNTG-KKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred ecCCC-eEEEeecccCChhHhhCcceeeeehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 111 2 23444322 1111111233468999999999865443333 23331 11 24788999854
No 373
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.55 E-value=1.1 Score=49.78 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
-|..+...+.+.+..+.-+...|++||.|+||+..+...+-..+
T Consensus 8 Gq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 8 GQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 36677666666554544467899999999999988765554443
No 374
>PF13871 Helicase_C_4: Helicase_C-like
Probab=92.51 E-value=0.31 Score=52.93 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=51.4
Q ss_pred HHHHHhhcCCeeEEEECCcCccCCCCCCc--------CEEEEecCCCCCHhHHHHHhcccCCCCC-ceEEEEEecC
Q 003268 535 ETMEKFAQGAIKILICTNIVESGLDIQNA--------NTIIVQDVQQFGLAQLYQLRGRVGRADK-EAHAYLFYPD 601 (835)
Q Consensus 535 ~vl~~F~~g~~~VLVaT~iie~GIDIp~v--------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~-~G~ay~l~~~ 601 (835)
...+.|.+|+.+|+|.+..+++||.+..- +.-|...+| |+....+|..||+.|.|+ .+..|.+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~p-wsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELP-WSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCC-CCHHHHHHHhccccccccccCCEEEEeec
Confidence 45678999999999999999999998631 233455666 799999999999999985 3555665543
No 375
>PTZ00424 helicase 45; Provisional
Probab=92.47 E-value=0.39 Score=54.62 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
..+++|.++++.-+..+++.+... ++.+..++|+.+..++...++.+++|+.+|+|+|. .+...+++.++++||
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-~l~~GiDip~v~~VI 340 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER-----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-LLARGIDVQQVSLVI 340 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-cccCCcCcccCCEEE
Confidence 468999999999888877777653 67899999999999999999999999999999995 666778888999988
Q ss_pred ec
Q 003268 411 VD 412 (835)
Q Consensus 411 ID 412 (835)
.-
T Consensus 341 ~~ 342 (401)
T PTZ00424 341 NY 342 (401)
T ss_pred EE
Confidence 53
No 376
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=92.45 E-value=0.56 Score=55.70 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
..+++|.++++.-+..+++.+... .++++..++|+.+..++...++.+++|+++|+|+|. .+...+++.++++||
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-vl~rGiDip~v~~VI 441 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-VLGRGVDLLRVRQVI 441 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-HhhccCCcccCCEEE
Confidence 467999999999888877776542 267899999999999999999999999999999996 566678888999888
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 442 ~ 442 (518)
T PLN00206 442 I 442 (518)
T ss_pred E
Confidence 5
No 377
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.38 E-value=0.22 Score=52.80 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=40.5
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+++..++|.|++|+|||..++..+...+.+|..++++.- .+-..|+.+++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHH
Confidence 457789999999999999998888877777888888873 3455566666554
No 378
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=92.38 E-value=0.41 Score=55.83 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=66.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
...+++|.|+|+.-+..+++.+... ++.+..++|..+..++...++.+.+|..+|+|+|. .+...+++.++++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-v~~rGiDi~~v~~V 314 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-VAARGLDIKALEAV 314 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-ccccccchhcCCeE
Confidence 3568999999999999999888763 68899999999999999999999999999999995 56666778888888
Q ss_pred Eecc
Q 003268 410 VVDE 413 (835)
Q Consensus 410 IIDE 413 (835)
|.-+
T Consensus 315 I~~d 318 (460)
T PRK11776 315 INYE 318 (460)
T ss_pred EEec
Confidence 8543
No 379
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.37 E-value=0.61 Score=54.67 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=65.4
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
..+++|.++++.-+..+++.+... ++.+..++|+.+..++...++.+++|+.+|+|+|. .+...+++.++++||
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-~l~~GIDi~~v~~VI 408 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-VAGRGIHIDGISHVI 408 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-ccccCCcccCCCEEE
Confidence 468999999999998888777642 67899999999999999999999999999999994 566678889999988
Q ss_pred ec
Q 003268 411 VD 412 (835)
Q Consensus 411 ID 412 (835)
.-
T Consensus 409 ~~ 410 (475)
T PRK01297 409 NF 410 (475)
T ss_pred Ee
Confidence 64
No 380
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.37 E-value=0.8 Score=56.73 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
|..-+..+..-+ ......+.|+.||+|+|||..+-..+..
T Consensus 187 r~~ei~~~~~~L-~~~~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 187 REDELERTIQVL-CRRKKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred cHHHHHHHHHHH-hcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 333344444333 2345678999999999999886444433
No 381
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.36 E-value=0.33 Score=60.05 Aligned_cols=38 Identities=32% Similarity=0.467 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhc-------CCCC-CcEEEEccCCCccHHHHHH
Q 003268 285 DQKKAFLDVERDLTE-------RETP-MDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~-------~~~~-~d~LI~g~TGsGKT~val~ 322 (835)
.|.+|+..+...+.. ..+| ..+|++||||+|||+.+-.
T Consensus 462 GQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~ 507 (758)
T PRK11034 462 GQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQ 507 (758)
T ss_pred CcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHH
Confidence 377777766654431 1223 3689999999999998743
No 382
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.35 E-value=0.77 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCccHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a 323 (835)
+..-.+|+.||.|.|||..|.+.
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~II 72 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHII 72 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHH
Confidence 33457899999999999866443
No 383
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.33 E-value=0.27 Score=50.04 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q 346 (835)
..+.++++.|++|+|||-.+...+..++..|..|+++ +...|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceecc
Confidence 3468999999999999998877776777778887775 44445443
No 384
>PRK06921 hypothetical protein; Provisional
Probab=92.32 E-value=1.8 Score=47.02 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=30.6
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~ 348 (835)
.+..++++|++|+|||..+...+-..... |..|+++. ...+..++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~l~ 162 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGDLK 162 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHHHH
Confidence 35789999999999997664444444445 67777655 445544443
No 385
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.31 E-value=0.73 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.2
Q ss_pred cEEEEccCCCccHHHHHHHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
-.|++||.|+|||.++...+-...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999998766655443
No 386
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.31 E-value=0.19 Score=52.54 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=20.9
Q ss_pred ccccEEEeccccccchhhHHHHHhhcCCceEEEe
Q 003268 404 NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437 (835)
Q Consensus 404 ~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~l 437 (835)
...+++||||++.+-......+........++++
T Consensus 61 ~~~~~liiDE~~~~~~g~l~~l~~~~~~~~~~l~ 94 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPPGYLLLLLSLSPAKNVILF 94 (234)
T ss_pred CcCCEEEEeccccCChHHHHHHHhhccCcceEEE
Confidence 4578999999999865444444444333344433
No 387
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.29 E-value=1.9 Score=48.07 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
.+.|+|...+..+.+.+..+.-+.-.|++||.|.||+..+...+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 45688999998888766555556789999999999998875554433
No 388
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.28 E-value=0.32 Score=57.24 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=40.1
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHH------hCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVV------SAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~------~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+++.-++|+|..|||||.+++.-+...+ .++++|+|+.|.+.+..=+.+.+=+
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPe 282 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPE 282 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchh
Confidence 4467789999999999999886554433 2357799999999988766655543
No 389
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.25 E-value=0.084 Score=63.13 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHhh---hcCCCCCcEEEEccCCCccHHHHHHHHH-HHHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDL---TERETPMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l---~~~~~~~d~LI~g~TGsGKT~val~a~~-~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.++..|.+||--..+.- .-+...-.+||-...|.||--...-.++ ..+.-.+++|++.-...|-....+.+++ .+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~D-ig 342 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRD-IG 342 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhh-cC
Confidence 56789999986555421 1112223466655555555433222223 3444457899998887887776677765 43
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc---------------ccc--cc-ccEEEecccccc-
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------------VVY--NN-LGLLVVDEEQRF- 417 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~---------------l~~--~~-l~lVIIDEaHr~- 417 (835)
. +++.|..++-+.-..-..+.-..++.| |+++|+..|... +.| .+ =|+||+||||+.
T Consensus 343 A-~~I~V~alnK~KYakIss~en~n~krG---ViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 343 A-TGIAVHALNKFKYAKISSKENTNTKRG---VIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred C-CCccceehhhcccccccccccCCccce---eEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 3 367777776543211100111223334 999999777421 111 12 278999999973
Q ss_pred -------------chhhHHHHHhhcCCceEEEeecCC
Q 003268 418 -------------GVKQKEKIASFKISVDVLTLSATP 441 (835)
Q Consensus 418 -------------g~~~~e~l~~~~~~~~vL~lSATp 441 (835)
|-. .-.|.+.-++.+||.-|||-
T Consensus 419 NL~p~~~~k~TKtG~t-VLdLQk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKT-VLDLQKKLPNARVVYASATG 454 (1300)
T ss_pred ccccccCCCcCcccHh-HHHHHHhCCCceEEEeeccC
Confidence 111 12244556889999999995
No 390
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.24 E-value=0.98 Score=52.73 Aligned_cols=42 Identities=21% Similarity=0.145 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
|..++..+...+..+.-+...|++||.|+|||.++...+-..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 666666666555443445668999999999999876554433
No 391
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.19 E-value=0.9 Score=42.45 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.0
Q ss_pred EEEEccCCCccHHHHHH
Q 003268 306 RLICGDVGFGKTEVALR 322 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~ 322 (835)
+|+.||.|+|||..+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999976533
No 392
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.19 E-value=3 Score=49.03 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH-HhCC-CEEEEEc--ccHHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAG-KQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~-~~~g-~qvlVLv--Ptr~La~Q~~~~~~~ 353 (835)
+.-++++||||+|||+.....+... ...| ++|.++. +-+.-+.+....+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Ae 310 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGK 310 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHH
Confidence 4568899999999999865444333 3444 3555443 234444444444444
No 393
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.14 E-value=0.28 Score=53.53 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 284 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 284 p~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
..|..++..++..+.. ...-+.|+.||.|+|||.+++..+..
T Consensus 39 ~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred cchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 4577787777776644 33457899999999999987655543
No 394
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=92.10 E-value=0.43 Score=57.82 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=67.1
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++|+.-+.++++.+... |+.+..++++.+..++...++.+..|..+|+|+|. .+...+++.++.+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~-----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-a~~~GIDip~V~~ 307 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSR-----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-AFGMGINKPNVRF 307 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-hhhccCCCCCcCE
Confidence 34678999999999999998888763 68999999999999999999999999999999997 4566788889998
Q ss_pred EEe
Q 003268 409 LVV 411 (835)
Q Consensus 409 VII 411 (835)
||.
T Consensus 308 VI~ 310 (607)
T PRK11057 308 VVH 310 (607)
T ss_pred EEE
Confidence 884
No 395
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.09 E-value=0.23 Score=59.02 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
|||+|+.+|.+-+.++.+-+.+ |+--|+..|||+|||+..+-+++..+
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~---GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEE---GKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhc---CCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 8899999999999999987754 45678999999999998777666544
No 396
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.09 E-value=0.19 Score=52.58 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+.+..+||.|++|+|||..++..+...+.+ |..++++.- .+-..++.+.+..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s 69 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKS 69 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 457789999999999999998888888888 888888873 3334555555553
No 397
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.02 E-value=0.27 Score=54.74 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=41.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH---hCCCEEEEEcccHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVL 343 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~---~~g~qvlVLvPtr~L 343 (835)
..+.+.+. +++.|.+.+..+.+ .+++++++|+||||||.. +.+++..+ ....+++++-.+.+|
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~------~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVR------AHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH------cCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 44444333 45778887766543 257899999999999964 44444432 335677777777765
No 398
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.01 E-value=0.42 Score=58.07 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=66.1
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
...+++|.|+|+.-+.++++.+... ++.+..+++..+..++...++.+++|+++|+|+|. .+...+++.++++|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~-----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-v~arGIDip~V~~V 317 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERN-----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-VAARGLDVERISLV 317 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhC-----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-hHhcCCCcccCCEE
Confidence 3468999999999999988888763 67899999999999999999999999999999995 56666888899998
Q ss_pred Ee
Q 003268 410 VV 411 (835)
Q Consensus 410 II 411 (835)
|.
T Consensus 318 I~ 319 (629)
T PRK11634 318 VN 319 (629)
T ss_pred EE
Confidence 85
No 399
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.00 E-value=1.3 Score=48.45 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
|.+++..+...+. ......++++|+.|+|||..+-..
T Consensus 22 ~~~~~~~l~~~i~-~~~~~~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 22 QEEIVERLKSYVK-EKNMPHLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred cHHHHHHHHHHHh-CCCCCeEEEECCCCCCHHHHHHHH
Confidence 4556655555443 233345899999999999876433
No 400
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.94 E-value=0.62 Score=48.04 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
+.+.-.+|+|++|+|||..++..+......+..++++.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4466788999999999999888777776778788877654
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.94 E-value=1.1 Score=44.89 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=25.0
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.++.|++|+|||..+...+......+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999998766665555677776554
No 402
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.83 E-value=0.25 Score=61.11 Aligned_cols=82 Identities=22% Similarity=0.377 Sum_probs=62.3
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhC-----CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCc-cCCC-CC-
Q 003268 490 DRGGQVFYVLPRIKGLEEPMDFLQQAF-----PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVE-SGLD-IQ- 561 (835)
Q Consensus 490 ~~ggqvlVf~~~v~~ie~l~~~L~~~~-----p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie-~GID-Ip- 561 (835)
.+|.++++++||.--+..+++.|+... .+..+. +||.|+..++++++++|.+|+.||||+|+..- .-.| +.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc
Confidence 467899999999888888888877654 223344 99999999999999999999999999998642 1111 11
Q ss_pred -CcCEEEEecCC
Q 003268 562 -NANTIIVQDVQ 572 (835)
Q Consensus 562 -~v~~VIi~d~p 572 (835)
..+.|++.|.+
T Consensus 202 ~kFdfifVDDVD 213 (1187)
T COG1110 202 LKFDFIFVDDVD 213 (1187)
T ss_pred cCCCEEEEccHH
Confidence 35678877765
No 403
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.74 E-value=0.59 Score=54.11 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=61.9
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
.+.++|.|.++.-|.-+++.|.+. |+++..+||+.+..+++..+..++.|..+|+|||.-. ...+...|+++||
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA-gRGIDIpnVSlVi 590 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA-----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA-GRGIDIPNVSLVI 590 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc-ccCCCCCccceee
Confidence 478999999998887777776652 7899999999999999999999999999999999743 3346777888876
No 404
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.74 E-value=0.7 Score=48.14 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=30.8
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCC------CEEEEEccc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPT 340 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g------~qvlVLvPt 340 (835)
+.+.-..|.|++|+|||..++..+......+ ..++++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 4466788999999999999887776665555 677777654
No 405
>PHA02558 uvsW UvsW helicase; Provisional
Probab=91.73 E-value=0.65 Score=54.90 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=66.0
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|++.++.=+..+++.+.+ . +.++.+++|..+..++...++..++|...|+|+|.+.+...+++.++++
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~----~-g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~ 416 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKK----V-YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHH 416 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHH----c-CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccE
Confidence 4577899999888766666666654 2 6899999999999999888888888888899999999999999999999
Q ss_pred EEec
Q 003268 409 LVVD 412 (835)
Q Consensus 409 VIID 412 (835)
||+.
T Consensus 417 vIl~ 420 (501)
T PHA02558 417 VIFA 420 (501)
T ss_pred EEEe
Confidence 9975
No 406
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.69 E-value=0.95 Score=49.72 Aligned_cols=54 Identities=22% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHH--hC-C----CEEEEEcccHHHHHHHHHHHHHhh
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVV--SA-G----KQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~--~~-g----~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
+.-+++|+|+||.|||.+.-.-.-..- .+ + +-+++-+|...-....|..+-..+
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 345799999999999986532221110 01 1 233455676666666666665544
No 407
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.64 E-value=0.27 Score=54.97 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La 344 (835)
..+++|+|+||||||+. +.+++..+....+++.+--+.+|.
T Consensus 160 ~~nili~G~tgSGKTTl-l~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 160 KKNIIISGGTSTGKTTF-TNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred CCcEEEECCCCCCHHHH-HHHHHhhCCCCCeEEEecCCCccc
Confidence 57899999999999975 466777777777887776666654
No 408
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.56 E-value=1.9 Score=50.69 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=56.4
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhhcCCCC----CcEEEEccCCCccHHHHHHHH-HHH---HhCCCEEEEEcccHHHHHHH
Q 003268 276 AQFPYEPTPDQKKAFLDVERDLTERETP----MDRLICGDVGFGKTEVALRAI-FCV---VSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 276 ~~~~~~~tp~Q~~AI~~Il~~l~~~~~~----~d~LI~g~TGsGKT~val~a~-~~~---~~~g~qvlVLvPtr~La~Q~ 347 (835)
..+|+++-|+|.-.+..+.- +...+.+ ...+|.-|=+-|||..+...+ ... ...+..+.|++|+..-+.+.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G-~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFG-FYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANS 134 (546)
T ss_pred CCCccccchHHHHHHHHHhc-eeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHh
Confidence 56788999999999988873 2222222 356888999999998753222 111 24578899999999988888
Q ss_pred HHHHHHhhc
Q 003268 348 FDVVSERFS 356 (835)
Q Consensus 348 ~~~~~~~f~ 356 (835)
+...+....
T Consensus 135 F~~ar~mv~ 143 (546)
T COG4626 135 FNPARDMVK 143 (546)
T ss_pred hHHHHHHHH
Confidence 877765443
No 409
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.40 E-value=0.45 Score=51.34 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
|.+||..++.+..++..+. .+.++++.|++|+|||..+...+. .. |..++.+
T Consensus 1 ~~~t~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~-~l--g~~~~~i 52 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVAR-KR--DRPVMLI 52 (262)
T ss_pred CCCCHHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHH-Hh--CCCEEEE
Confidence 4578888888888887664 257899999999999998754432 22 4444444
No 410
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.36 E-value=0.24 Score=55.04 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q 346 (835)
..++.|...+..+... ..++|++|.||||||+. +.++...+...-+++++--|.+|-.+
T Consensus 157 t~~~~~a~~L~~av~~------r~NILisGGTGSGKTTl-LNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 157 TMIRRAAKFLRRAVGI------RCNILISGGTGSGKTTL-LNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred CcCHHHHHHHHHHHhh------ceeEEEeCCCCCCHHHH-HHHHHhcCCCcccEEEEeehhhhccC
Confidence 7789999988777652 37999999999999975 44444445556689999999887544
No 411
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.36 E-value=0.55 Score=58.16 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhc-------CCCCC-cEEEEccCCCccHHHHHHH
Q 003268 285 DQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~-------~~~~~-d~LI~g~TGsGKT~val~a 323 (835)
-|..|+..+...+.. ..+|. .++++||||+|||+.+-..
T Consensus 458 GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 458 GQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHH
Confidence 366677766554431 12233 5799999999999876433
No 412
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.28 E-value=0.54 Score=52.36 Aligned_cols=58 Identities=19% Similarity=0.047 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHH
Q 003268 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 288 ~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q 346 (835)
.+++.++. ...-+++.-+.|+||.|||||..++..+......|..++++-+.-.+-.+
T Consensus 41 ~~LD~~Lg-~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 41 LSLDIALG-IGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHHhc-CCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH
Confidence 45555554 00124566788999999999999998888877788899999877666654
No 413
>PRK10436 hypothetical protein; Provisional
Probab=91.25 E-value=1.2 Score=52.13 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEc
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA 338 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLv 338 (835)
+.+.|.+.+..+.. .+ ..-+|++||||||||+.. .+++..+.. +..++-+-
T Consensus 202 ~~~~~~~~l~~~~~----~~-~GliLvtGpTGSGKTTtL-~a~l~~~~~~~~~i~TiE 253 (462)
T PRK10436 202 MTPAQLAQFRQALQ----QP-QGLILVTGPTGSGKTVTL-YSALQTLNTAQINICSVE 253 (462)
T ss_pred cCHHHHHHHHHHHH----hc-CCeEEEECCCCCChHHHH-HHHHHhhCCCCCEEEEec
Confidence 46778888877654 12 345899999999999874 344444433 34444433
No 414
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.24 E-value=0.35 Score=56.24 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA 330 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~ 330 (835)
.+|.|.+.+..++. .+.|+ +|+.||||||||... .+++..+..
T Consensus 242 ~~~~~~~~~~~~~~----~p~Gl-iLvTGPTGSGKTTTL-Y~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLN----RPQGL-ILVTGPTGSGKTTTL-YAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHh----CCCeE-EEEeCCCCCCHHHHH-HHHHHHhcC
Confidence 36888888877763 45554 889999999999863 444444443
No 415
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=1.3 Score=54.58 Aligned_cols=103 Identities=23% Similarity=0.266 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhh-------hcCCCC-CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 285 DQKKAFLDVERDL-------TERETP-MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 285 ~Q~~AI~~Il~~l-------~~~~~~-~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
-|..|+..+.+.+ ....+| ..+|++||||.|||+.+-..+. .+..+...+|-..--+-...| .+....+
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~-~Lfg~e~aliR~DMSEy~EkH--sVSrLIG 571 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE-ALFGDEQALIRIDMSEYMEKH--SVSRLIG 571 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH-HhcCCCccceeechHHHHHHH--HHHHHhC
Confidence 4888888776533 223334 3788899999999998744333 333344566655554443332 2333344
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEecccccc
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~ 417 (835)
..|| -|++=.| +.|...+.-+.+++|.+||+...
T Consensus 572 aPPG-YVGyeeG--------------------------G~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 572 APPG-YVGYEEG--------------------------GQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred CCCC-Cceeccc--------------------------cchhHhhhcCCCeEEEechhhhc
Confidence 4443 2333333 23333444556899999998764
No 416
>CHL00176 ftsH cell division protein; Validated
Probab=91.12 E-value=3.2 Score=50.62 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.++.+|+.||+|+|||..+
T Consensus 215 ~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3678999999999999875
No 417
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=91.05 E-value=0.8 Score=56.78 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=71.5
Q ss_pred HHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC---CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccccc
Q 003268 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY---PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY 403 (835)
Q Consensus 327 ~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~---~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~ 403 (835)
.+..+.+++|.+.|+..+..++..+++.+... .+.+|..++++.+..++....+.+++|+.+++|+|. .+...+++
T Consensus 267 l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-~lerGIDI 345 (742)
T TIGR03817 267 LVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTN-ALELGVDI 345 (742)
T ss_pred HHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-hHhccCCc
Confidence 34567899999999999999998887654321 146788999999999999999999999999999995 45556888
Q ss_pred ccccEEEeccc
Q 003268 404 NNLGLLVVDEE 414 (835)
Q Consensus 404 ~~l~lVIIDEa 414 (835)
.++++||.-..
T Consensus 346 ~~vd~VI~~~~ 356 (742)
T TIGR03817 346 SGLDAVVIAGF 356 (742)
T ss_pred ccccEEEEeCC
Confidence 89999887654
No 418
>PHA02244 ATPase-like protein
Probab=91.04 E-value=2.5 Score=47.87 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
.|.+......+.+.+ ..+.++++.||||+|||..+-.
T Consensus 102 sp~~~~~~~ri~r~l---~~~~PVLL~GppGtGKTtLA~a 138 (383)
T PHA02244 102 NPTFHYETADIAKIV---NANIPVFLKGGAGSGKNHIAEQ 138 (383)
T ss_pred CHHHHHHHHHHHHHH---hcCCCEEEECCCCCCHHHHHHH
Confidence 344433434444433 2357899999999999987533
No 419
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.02 E-value=2.2 Score=52.55 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=23.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH-HhCC-CEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAG-KQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~-~~~g-~qvlVLv 338 (835)
+.-++++||||+|||+.+...+... ...| ++|.++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 4567899999999998864444333 3445 4665554
No 420
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=90.96 E-value=0.32 Score=53.03 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH--HhC-CCEEEEEcccHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV--VSA-GKQAMVLAPTIV 342 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~--~~~-g~qvlVLvPtr~ 342 (835)
|--.+|.|||||||+ ++++.++.. +.. .-.|++++|++-
T Consensus 87 P~I~~VYGPTG~GKS-qLlRNLis~~lI~P~PETVfFItP~~~ 128 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKS-QLLRNLISCQLIQPPPETVFFITPQKD 128 (369)
T ss_pred ceEEEEECCCCCCHH-HHHHHhhhcCcccCCCCceEEECCCCC
Confidence 445678999999998 455555432 222 347889998763
No 421
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.93 E-value=0.93 Score=50.46 Aligned_cols=58 Identities=22% Similarity=0.070 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHH
Q 003268 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 288 ~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q 346 (835)
.+++.++. ...-+++.-.+|+||.|||||..++..+......|..++++-....+..+
T Consensus 41 ~~LD~~Lg-~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 41 LSLDLALG-VGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred HHHHHHhc-CCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 34555553 00225567788999999999999988888887788889888766555544
No 422
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.76 E-value=2.2 Score=51.42 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=94.0
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCC-CCcEEEEecCCCCHHHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKY-PDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~-~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
+-.+++-|==.|||......+...+ ..|.++++.+|.+..++..++++..++..+ ++-.+....| .. +.-
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~------I~i 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET------ISF 327 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE------EEE
Confidence 4567888888999997542222222 369999999999999999999999876653 2222323222 10 101
Q ss_pred hHhcCC-cceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh--cCCceEEEeecCCChhhHHHHHhcCCCcc
Q 003268 381 MIKHGH-LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF--KISVDVLTLSATPIPRTLYLALTGFRDAS 457 (835)
Q Consensus 381 ~l~~g~-~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~--~~~~~vL~lSATp~p~tl~~~~~~~~d~s 457 (835)
...+|. ..|.+++-. =.+...=.+++++||||||.+.......+.-+ ..+.++|.+|.|-.....-..+..+++..
T Consensus 328 ~f~nG~kstI~FaSar-ntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nLk~a~ 406 (738)
T PHA03368 328 SFPDGSRSTIVFASSH-NTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNLKGAA 406 (738)
T ss_pred EecCCCccEEEEEecc-CCCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCCCccchHHHHhhcCch
Confidence 122232 245555210 00011123689999999999877666554432 34889999998865544444444444432
Q ss_pred eeeCCCCCccceeEEeccc
Q 003268 458 LISTPPPERLPIKTHLSAF 476 (835)
Q Consensus 458 ~i~~~p~~r~~V~~~~~~~ 476 (835)
.....|.+|+.+.
T Consensus 407 ------~~lLNVVsYvCde 419 (738)
T PHA03368 407 ------DELLNVVTYICDE 419 (738)
T ss_pred ------hhheeeEEEEChh
Confidence 2344555666543
No 423
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.75 E-value=0.2 Score=56.30 Aligned_cols=41 Identities=22% Similarity=0.518 Sum_probs=31.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La 344 (835)
+.+++|+|+||||||+. +.+++..+....+++.+-.+.+|.
T Consensus 162 ~~nilI~G~tGSGKTTl-l~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTM-SKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred CCeEEEECCCCccHHHH-HHHHHcccCCCCCEEEECCCcccc
Confidence 57899999999999975 456666666666788888887664
No 424
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.65 E-value=2 Score=48.40 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
+|+|...+..+..- .+.-+.-.|+.||.|.||+..+...+-..
T Consensus 3 yPW~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 3 YPWQTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CcccHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 58888888887652 23456788999999999999876554433
No 425
>PRK09694 helicase Cas3; Provisional
Probab=90.63 E-value=1.5 Score=55.24 Aligned_cols=91 Identities=14% Similarity=0.259 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHH----HHHHhH-hcCC---cceEe
Q 003268 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKE----EHLDMI-KHGH---LNIIV 391 (835)
Q Consensus 320 al~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~----~~l~~l-~~g~---~dIII 391 (835)
.+..+...+..|++++|+++|+.-|++.++.+++.+.. +..+.++++..+..++. +.++.+ ++|+ ..|+|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~--~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT--QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC--CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 34445555677899999999999999999999875422 36789999987776663 344445 4454 36999
Q ss_pred cchHhhhcccccccccEEEeccc
Q 003268 392 GTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 392 gT~~~L~~~l~~~~l~lVIIDEa 414 (835)
+| ..+-..+.+ +++++|.|-+
T Consensus 627 aT-QViE~GLDI-d~DvlItdla 647 (878)
T PRK09694 627 AT-QVVEQSLDL-DFDWLITQLC 647 (878)
T ss_pred EC-cchhheeec-CCCeEEECCC
Confidence 99 455555666 5789998854
No 426
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=90.58 E-value=0.74 Score=55.54 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=64.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
+.+++|.++|+..+.++++.+... |+.+..+|++.+..++....+...+|.++|+|+|. .+...+++.++++||
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~-----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-a~~~GID~p~v~~VI 297 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ-----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-AFGMGIDKPNVRFVI 297 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-hhhccCcCCCCCEEE
Confidence 678899999999999998888752 68899999999999999999999999999999995 455567788888887
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 298 ~ 298 (591)
T TIGR01389 298 H 298 (591)
T ss_pred E
Confidence 5
No 427
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=90.56 E-value=1.7 Score=48.71 Aligned_cols=85 Identities=14% Similarity=0.318 Sum_probs=63.9
Q ss_pred HHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH----HHhHhcCCcceEecchHhhhc
Q 003268 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH----LDMIKHGHLNIIVGTHSLLGS 399 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~----l~~l~~g~~dIIIgT~~~L~~ 399 (835)
+......+.+++|+++|+.-+..+++.+++.. ++..+..++|..+..++... +..+.+|...|+|+|. .+..
T Consensus 215 l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~-~~~~ 290 (358)
T TIGR01587 215 LLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ-VIEA 290 (358)
T ss_pred HHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc-chhc
Confidence 34555668899999999999999998887642 23579999998888777553 6778889999999996 5555
Q ss_pred ccccccccEEEecc
Q 003268 400 RVVYNNLGLLVVDE 413 (835)
Q Consensus 400 ~l~~~~l~lVIIDE 413 (835)
.+++ +++++|.+-
T Consensus 291 GiDi-~~~~vi~~~ 303 (358)
T TIGR01587 291 SLDI-SADVMITEL 303 (358)
T ss_pred eecc-CCCEEEEcC
Confidence 5666 366777653
No 428
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.35 E-value=2.2 Score=43.33 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.3
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.+.+++|-|||.+++-.++.++..|.+|+++.
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 667777999999999999999999999998884
No 429
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.34 E-value=1.8 Score=52.06 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=25.1
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHh--CCCEEEEEcccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~--~g~qvlVLvPtr~La~Q~ 347 (835)
..++|+|++|+|||-.+-..+..... .+.+|+++. ...++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHH
Confidence 34899999999999654322222222 356666654 34444443
No 430
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.24 E-value=1.4 Score=51.50 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=37.0
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.+.-+++.|++|+|||..++..+......+.+++|+.-. +-..|+..+..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~ 128 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAE 128 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHH
Confidence 356788999999999998877776666667888888743 44556666554
No 431
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.21 E-value=0.67 Score=58.19 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhc-------CCCCC-cEEEEccCCCccHHHHHHHH
Q 003268 284 PDQKKAFLDVERDLTE-------RETPM-DRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 284 p~Q~~AI~~Il~~l~~-------~~~~~-d~LI~g~TGsGKT~val~a~ 324 (835)
..|..|+..+...+.. ..+|. .+|++||||+|||..+-..+
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA 560 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALA 560 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHH
Confidence 3699998888665431 12232 47899999999998875444
No 432
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.20 E-value=1.4 Score=52.99 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEE
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMV 336 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlV 336 (835)
+.|.|.+.+..++.. + ...+|++||||||||+.. .+++..+.. ...++-
T Consensus 300 ~~~~~~~~l~~~~~~----~-~Glilv~G~tGSGKTTtl-~a~l~~~~~~~~~i~t 349 (564)
T TIGR02538 300 FEPDQKALFLEAIHK----P-QGMVLVTGPTGSGKTVSL-YTALNILNTEEVNIST 349 (564)
T ss_pred CCHHHHHHHHHHHHh----c-CCeEEEECCCCCCHHHHH-HHHHHhhCCCCceEEE
Confidence 467888888776541 2 346899999999999874 445555533 334443
No 433
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=90.18 E-value=1.9 Score=51.96 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhhh------cCCCCCcEEEEccCCCccHHHH--HHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 281 EPTPDQKKAFLDVERDLT------ERETPMDRLICGDVGFGKTEVA--LRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~------~~~~~~d~LI~g~TGsGKT~va--l~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.+-|+|.-.|..+..+.- ....|-.+|+.-..|.|||++. ..-++-.....+.||+++|-..|- .|+.+|.
T Consensus 254 v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQ-NWlsEfn 332 (1387)
T KOG1016|consen 254 VLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQ-NWLSEFN 332 (1387)
T ss_pred hcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHH-HHHHHhh
Confidence 455777544433222111 2345678999999999999973 233444445678999999988765 4666676
Q ss_pred HhhcC
Q 003268 353 ERFSK 357 (835)
Q Consensus 353 ~~f~~ 357 (835)
.++-.
T Consensus 333 mWiP~ 337 (1387)
T KOG1016|consen 333 MWIPK 337 (1387)
T ss_pred hhcCC
Confidence 54433
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.08 E-value=0.59 Score=47.60 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
..++.|.+.+....+ .+..++++|+||||||..+ .++...+.....++.+--
T Consensus 9 ~~~~~~~~~l~~~v~------~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 9 TFSPLQAAYLWLAVE------ARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIED 60 (186)
T ss_pred CCCHHHHHHHHHHHh------CCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECC
Confidence 356788888776653 2578999999999999764 444444444445555433
No 435
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=89.96 E-value=2.2 Score=50.45 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=17.0
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..++.+|+.||+|+|||..+
T Consensus 214 ~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCCcceEEECCCCCcHHHHH
Confidence 44678999999999999864
No 436
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=89.96 E-value=0.85 Score=53.61 Aligned_cols=76 Identities=21% Similarity=0.124 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhh--hcCCCCCcEEEEccCCCccHHHHHH-HHHHHHh---CCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 284 PDQKKAFLDVERDL--TERETPMDRLICGDVGFGKTEVALR-AIFCVVS---AGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 284 p~Q~~AI~~Il~~l--~~~~~~~d~LI~g~TGsGKT~val~-a~~~~~~---~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
|+|.-.+..+.--. .....-..+++.-+=|.|||+.... .++..+. .+.+++++++++.-|...++.++..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56776666665210 0112234577888999999987533 3333332 3679999999999999999999886655
Q ss_pred CC
Q 003268 358 YP 359 (835)
Q Consensus 358 ~~ 359 (835)
.|
T Consensus 81 ~~ 82 (477)
T PF03354_consen 81 SP 82 (477)
T ss_pred Ch
Confidence 44
No 437
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.90 E-value=4.1 Score=48.13 Aligned_cols=20 Identities=40% Similarity=0.566 Sum_probs=17.1
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..++.+|++||+|+|||..+
T Consensus 86 ~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 44678999999999999875
No 438
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.89 E-value=2.7 Score=48.25 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccHHH
Q 003268 303 PMDRLICGDVGFGKTEV 319 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~v 319 (835)
...++++|++|+|||-.
T Consensus 113 ~nplfi~G~~GlGKTHL 129 (408)
T COG0593 113 YNPLFIYGGVGLGKTHL 129 (408)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46789999999999964
No 439
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.88 E-value=0.82 Score=50.99 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=61.9
Q ss_pred CEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 332 KQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 332 ~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
.|.+|.|-|+.-|..++.++.+. |..|.+++|..+..++..++..++.|...|+|+|.-. .+.+....+.+||
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~-ARGiDv~qVs~Vv 403 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVC-ARGIDVAQVSVVV 403 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechh-hcccccceEEEEE
Confidence 58899999999999999999875 8899999999999999999999999999999999643 3345555566555
No 440
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.73 E-value=1.6 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=19.2
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
....+.|+.||+|+|||.++-..+.
T Consensus 205 ~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999988644433
No 441
>PRK09354 recA recombinase A; Provisional
Probab=89.73 E-value=0.99 Score=50.77 Aligned_cols=57 Identities=25% Similarity=0.079 Sum_probs=42.8
Q ss_pred HHHHHHHH-hhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHH
Q 003268 288 KAFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 288 ~AI~~Il~-~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q 346 (835)
..++.++. + .-+++.-..|+||+|||||..++..+......|..++++-....+-..
T Consensus 46 ~~LD~~LG~G--Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 46 LALDIALGIG--GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHHHhcCC--CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH
Confidence 34555553 1 224566788999999999999999888888888899998877666653
No 442
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.56 E-value=0.45 Score=51.25 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCC-CEEEEEcccHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVL 343 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g-~qvlVLvPtr~L 343 (835)
+.+++++|+||||||... .+++..+... .+++++-.+.++
T Consensus 127 ~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S
T ss_pred ceEEEEECCCccccchHH-HHHhhhccccccceEEeccccce
Confidence 578999999999999865 5556666666 788888777654
No 443
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.55 E-value=2.4 Score=49.17 Aligned_cols=143 Identities=19% Similarity=0.091 Sum_probs=76.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~ 347 (835)
++..++..-. .+-..|.+|.-. .+.|.. .|.|=.|||||++...-+.... ..+-+++|.+-|+.|+.++
T Consensus 152 ~l~~ieskIa-nfD~~Q~kaa~~-------~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~ 222 (660)
T COG3972 152 LLDTIESKIA-NFDTDQTKAAFQ-------SGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTM 222 (660)
T ss_pred HHHHHHHHHh-cccchhheeeee-------cCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHH
Confidence 5556554322 344678777322 222333 6789999999998544333322 2356999999999999998
Q ss_pred HHHHHHhhcCC----CC---cEEEEecCCCCHHHHHHHHHhHhcCCcceEecc---------hHhhhcccccccccEEEe
Q 003268 348 FDVVSERFSKY----PD---IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT---------HSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 348 ~~~~~~~f~~~----~g---i~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT---------~~~L~~~l~~~~l~lVII 411 (835)
...+.+.|-.+ |+ +.+..-.|+.+..--......+ .+...+-++- -+++.+.-..+-+++|.|
T Consensus 223 r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~-~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilI 301 (660)
T COG3972 223 RTLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYI-CHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILI 301 (660)
T ss_pred HHHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHH-hcccccccCCCCcchHHHHHHHHHhhhccccccEEEe
Confidence 87776643211 22 2222333333322111111111 1222232221 122322233567899999
Q ss_pred ccccccchhhH
Q 003268 412 DEEQRFGVKQK 422 (835)
Q Consensus 412 DEaHr~g~~~~ 422 (835)
||.|.|-..-.
T Consensus 302 DE~QDFP~~F~ 312 (660)
T COG3972 302 DESQDFPQSFI 312 (660)
T ss_pred cccccCCHHHH
Confidence 99999854333
No 444
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=89.47 E-value=1.8 Score=44.57 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=23.7
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHH
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVL 343 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~L 343 (835)
++++||||||||+.. .+++..+.. +..++.+.-..++
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccc
Confidence 789999999999875 333433332 3566666554443
No 445
>PRK05973 replicative DNA helicase; Provisional
Probab=89.46 E-value=0.5 Score=50.35 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+++.-++|.|++|+|||..++..+...+.+|.+++|+.-.-. ..|+.+++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHH
Confidence 446678899999999999998888877778888888864322 4566666654
No 446
>PRK04328 hypothetical protein; Provisional
Probab=89.42 E-value=0.61 Score=49.93 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=38.5
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+.+..++|.|++|+|||..++..+...+.+|..++++. +.+-..++.+.+..
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~ 72 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQ 72 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 45678899999999999998888887778888888876 33344455555543
No 447
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.40 E-value=0.94 Score=51.54 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=35.9
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.+.-+++.|++|+|||..++..+......+.+++|+.-. +-..|+..+..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~ 130 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRAD 130 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHH
Confidence 356788999999999998877776666667788887654 33456555543
No 448
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.39 E-value=1.8 Score=54.58 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
|..-+..+..-++ +....+.|+.||+|+|||.++-.
T Consensus 178 r~~ei~~~~~~l~-r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 178 RDEEIRRTIQVLS-RRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred cHHHHHHHHHHHh-cCCCCceEEEcCCCCCHHHHHHH
Confidence 4444555554442 34567899999999999987643
No 449
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.38 E-value=2 Score=44.54 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.9
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
+.+.-++|+|++|+|||..++..+......+..++++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456688999999999999888887777778888888
No 450
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.28 E-value=0.75 Score=49.80 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHH
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIV 342 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~ 342 (835)
+.+.|.+.+..++. .. ...++++|+||||||... .+++..+. .+..++.+--..+
T Consensus 64 ~~~~~~~~l~~~~~----~~-~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 64 LKPENLEIFRKLLE----KP-HGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred CCHHHHHHHHHHHh----cC-CCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCce
Confidence 45778888776653 11 246899999999999864 44444443 3455666544433
No 451
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=89.19 E-value=1.3 Score=44.60 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=16.2
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..+..+||+|++|+||+.+|
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHH
Confidence 34678999999999999875
No 452
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.91 E-value=3.2 Score=47.56 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=17.4
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..++.+|++||+|+|||..+-
T Consensus 163 ~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCCCceEEECCCCCChHHHHH
Confidence 346789999999999998753
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.74 E-value=0.83 Score=48.39 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=36.7
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+.+.-+++.|++|+|||..++..+...+.+|..++++... +-..+..+.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~ 72 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMM 72 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHH
Confidence 3456789999999999998877777776778888888743 23344444443
No 454
>PRK01172 ski2-like helicase; Provisional
Probab=88.68 E-value=1.8 Score=53.14 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=66.1
Q ss_pred HHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC--------------------cEEEEecCCCCHHHHHHHHHhHhcCC
Q 003268 327 VVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD--------------------IKVGLLSRFQSKAEKEEHLDMIKHGH 386 (835)
Q Consensus 327 ~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~g--------------------i~V~~l~g~~s~~e~~~~l~~l~~g~ 386 (835)
....+++++|.+|++.-+...+..+...+..... ..|++++++.+..++....+..++|.
T Consensus 232 ~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~ 311 (674)
T PRK01172 232 TVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY 311 (674)
T ss_pred HHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 3566889999999999888888877664432111 23788999999999999999999999
Q ss_pred cceEecchHhhhcccccccccEEEecccccc
Q 003268 387 LNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 387 ~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~ 417 (835)
.+|+|+|.. +...+++... .|||+...++
T Consensus 312 i~VLvaT~~-la~Gvnipa~-~VII~~~~~~ 340 (674)
T PRK01172 312 IKVIVATPT-LAAGVNLPAR-LVIVRDITRY 340 (674)
T ss_pred CeEEEecch-hhccCCCcce-EEEEcCceEe
Confidence 999999954 4444555553 5666665544
No 455
>PRK04195 replication factor C large subunit; Provisional
Probab=88.53 E-value=4.2 Score=47.91 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
.+.+.+..++..+..+..+..+|+.||+|+|||..+-..+- .+ +..++.+-+
T Consensus 21 ~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~-el--~~~~ielna 72 (482)
T PRK04195 21 KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAN-DY--GWEVIELNA 72 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH-Hc--CCCEEEEcc
Confidence 33344444444333333367899999999999987643332 22 455555543
No 456
>PF12846 AAA_10: AAA-like domain
Probab=88.47 E-value=0.65 Score=49.98 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=33.0
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 345 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~ 345 (835)
.+++++|+||||||..+...+...+..|..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 468999999999998877666677777888888877655443
No 457
>COG1485 Predicted ATPase [General function prediction only]
Probab=88.37 E-value=3.8 Score=45.88 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=33.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhh----------------c--CCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLT----------------E--RETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~----------------~--~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
......+.+.+-|.|..|+.++-+-.. . ...++.+.+.|++|.||| +|+.++..
T Consensus 16 ~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT--~LMD~Fy~ 87 (367)
T COG1485 16 AQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKT--MLMDLFYE 87 (367)
T ss_pred HHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHH--HHHHHHHh
Confidence 344445556666777776665533111 0 123577899999999999 45555544
No 458
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.22 E-value=1.8 Score=50.61 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
|.++|..++..+. .+.++|+.||+|+|||..+-.
T Consensus 25 re~vI~lll~aal---ag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 25 RSHAIRLCLLAAL---SGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred cHHHHHHHHHHHc---cCCCEEEECCCChhHHHHHHH
Confidence 6677776666543 357899999999999988633
No 459
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=88.13 E-value=0.99 Score=38.63 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=49.1
Q ss_pred CcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEecccc
Q 003268 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 360 gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaH 415 (835)
++++..+++..+..++...++.+.++..+|+|+| ..+...+++.++++||+=+.+
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t-~~~~~Gid~~~~~~vi~~~~~ 61 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIAT-DILGEGIDLPDASHVIFYDPP 61 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEES-CGGTTSSTSTTESEEEESSSE
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEee-ccccccccccccccccccccC
Confidence 7899999999999999999999999999999999 567778888899998886654
No 460
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.07 E-value=2.6 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
..++++.|++|+|||..+ ..+...
T Consensus 111 ~~~~~i~g~~g~GKttl~-~~l~~~ 134 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLL-RDLARI 134 (270)
T ss_pred eeEEEEEcCCCCCHHHHH-HHHhCc
Confidence 368999999999999753 333333
No 461
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.92 E-value=1.1 Score=56.60 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhcC-------CCC-CcEEEEccCCCccHHHHHHHHH
Q 003268 284 PDQKKAFLDVERDLTER-------ETP-MDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 284 p~Q~~AI~~Il~~l~~~-------~~~-~d~LI~g~TGsGKT~val~a~~ 325 (835)
--|..|+..+...+... .+| ..++++||||+|||+++-..+.
T Consensus 568 ~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45788888777655321 112 3588999999999998754443
No 462
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.91 E-value=1.2 Score=49.79 Aligned_cols=44 Identities=20% Similarity=0.168 Sum_probs=31.2
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~ 347 (835)
..+++++|+||+|||..+...+-..+..|..|+++. ...|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-HHHHHHHH
Confidence 478999999999999876555555666777776654 44454443
No 463
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=87.90 E-value=2 Score=56.58 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC----------------------------CCcEEEEecCCCCHHHH
Q 003268 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY----------------------------PDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~----------------------------~gi~V~~l~g~~s~~e~ 375 (835)
++..+..+.++||.++||..|..++..+++.+... +...+..+||+.+..++
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 33445567899999999999999998887643210 01225678899999999
Q ss_pred HHHHHhHhcCCcceEecchHhhhcccccccccEEEeccc
Q 003268 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 376 ~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEa 414 (835)
....+.+++|..+++|+|..+ .-.+++.++++||.=+.
T Consensus 317 ~~IE~~fK~G~LrvLVATssL-ELGIDIg~VDlVIq~gs 354 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSL-ELGIDMGAVDLVIQVAT 354 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHH-HccCCcccCCEEEEeCC
Confidence 999999999999999999653 33567778888876443
No 464
>PHA00350 putative assembly protein
Probab=87.89 E-value=1.2 Score=50.94 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=25.1
Q ss_pred CcEEEEccCCCccHHHHHH-HHHHHHhCCCEEE
Q 003268 304 MDRLICGDVGFGKTEVALR-AIFCVVSAGKQAM 335 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~-a~~~~~~~g~qvl 335 (835)
|-.++.|..|||||.-++. .++.++..|+.|+
T Consensus 2 mI~l~tG~pGSGKT~~aV~~~i~palk~GR~V~ 34 (399)
T PHA00350 2 MIYAIVGRPGSYKSYEAVVYHIIPALKDGRKVI 34 (399)
T ss_pred ceEEEecCCCCchhHHHHHHHHHHHHHCCCEEE
Confidence 3468999999999999876 5667778887553
No 465
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=87.88 E-value=2.6 Score=48.24 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=20.4
Q ss_pred CCCCCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 300 RETPMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 300 ~~~~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
-..|..++|+||+|+|||..+.. +...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 35578899999999999976433 44443
No 466
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=87.77 E-value=2.6 Score=46.88 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh------CCCEEEEEcc
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAP 339 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~------~g~qvlVLvP 339 (835)
.++.++.+ .-+.+.-..|+|+.|+|||..++..+..... .+..|+|+--
T Consensus 84 ~LD~lLgG--Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdt 138 (313)
T TIGR02238 84 ALDGILGG--GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDT 138 (313)
T ss_pred HHHHHhCC--CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEc
Confidence 35555542 1244667789999999999988776654432 2457888763
No 467
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.58 E-value=2.1 Score=48.87 Aligned_cols=31 Identities=16% Similarity=0.050 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
=.++|+.+. --.+|+..+|.||.|+|||..+
T Consensus 156 ~~rvID~l~----PIGkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 156 STRIIDLIA----PIGKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ceeeeeeec----ccccCceEEEeCCCCCChhHHH
Confidence 345555443 2345788999999999999754
No 468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=87.35 E-value=1.9 Score=47.14 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
+.=.=|+||-|||||.+++.++..+...+..++|+--...|
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l 100 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHAL 100 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCC
Confidence 33344699999999999999999988888888887644433
No 469
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.27 E-value=3.2 Score=52.41 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=24.0
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
-|..+..-++ +....+.|+.||+|+|||.++-..+.
T Consensus 186 ei~~~i~iL~-r~~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 186 EIRRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred HHHHHHHHHh-cCCcCceEEECCCCCCHHHHHHHHHH
Confidence 3444444332 34457899999999999988644433
No 470
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.25 E-value=8.9 Score=43.55 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=18.5
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
..++.+.+.|++|.|||. +..++.
T Consensus 60 ~~~~GlYl~G~vG~GKT~--Lmd~f~ 83 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTM--LMDLFY 83 (362)
T ss_pred CCCceEEEECCCCCchhH--HHHHHH
Confidence 357889999999999995 444443
No 471
>PRK00254 ski2-like helicase; Provisional
Probab=87.16 E-value=2.3 Score=52.64 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=64.7
Q ss_pred HHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC----------------------------CCcEEEEecCCCCHH
Q 003268 322 RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY----------------------------PDIKVGLLSRFQSKA 373 (835)
Q Consensus 322 ~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~----------------------------~gi~V~~l~g~~s~~ 373 (835)
..+...+..+++++|.+||+.-+...+..+...+..+ ....|+++|++.+..
T Consensus 229 ~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 229 SLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 3445556678899999999977766555543221100 012489999999999
Q ss_pred HHHHHHHhHhcCCcceEecchHhhhcccccccccEEEec
Q 003268 374 EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 374 e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIID 412 (835)
++....+.+++|.++|+|+|..+- ..+++....+||.|
T Consensus 309 eR~~ve~~F~~G~i~VLvaT~tLa-~Gvnipa~~vVI~~ 346 (720)
T PRK00254 309 ERVLIEDAFREGLIKVITATPTLS-AGINLPAFRVIIRD 346 (720)
T ss_pred HHHHHHHHHHCCCCeEEEeCcHHh-hhcCCCceEEEECC
Confidence 999999999999999999997543 34666777777754
No 472
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=86.93 E-value=0.83 Score=48.14 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvP 339 (835)
.++.-.+|+|++|+|||..++..+...+.+ +..++++..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 346678999999999999888777777666 888888873
No 473
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.64 E-value=6.1 Score=45.71 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHH-HhCC-CE-EEEEccc-HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCV-VSAG-KQ-AMVLAPT-IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~-~~~g-~q-vlVLvPt-r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~ 378 (835)
+.-+.++|+||+|||+.....+... ...+ .. .++...+ +.-+.++...+.+.+ |+.+..... ..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~il----Gvp~~~v~~---~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLL----GVSVRSIKD---IADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHc----CCceecCCC---HHHHHHH
Confidence 5568899999999999864333222 2222 33 3444444 333333333444332 344433222 1111111
Q ss_pred HHhHhcCCcceEecchHhhhcccccccccEEEeccccccch--hhHHHHHhh---c-CCceEEEeecCCChhhHHHHHhc
Q 003268 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV--KQKEKIASF---K-ISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 379 l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~--~~~e~l~~~---~-~~~~vL~lSATp~p~tl~~~~~~ 452 (835)
+ ..+.+.++++||.+=+.-. ...+.+..+ . +...+|.+|||.....+......
T Consensus 264 l---------------------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 264 L---------------------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred H---------------------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 1 1245667788887532210 111222222 2 23456889999877776655544
Q ss_pred C
Q 003268 453 F 453 (835)
Q Consensus 453 ~ 453 (835)
+
T Consensus 323 f 323 (420)
T PRK14721 323 Y 323 (420)
T ss_pred h
Confidence 3
No 474
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.52 E-value=4 Score=51.37 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=20.4
Q ss_pred CCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 300 RETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 300 ~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
.....+.|+.||+|+|||.++-..+..
T Consensus 197 r~~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 197 RRTKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred ccccCCeEEECCCCCCHHHHHHHHHHH
Confidence 344678999999999999887544443
No 475
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=86.50 E-value=4.5 Score=50.28 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCcEEEEccCCC----ccHHHHH-HHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHH
Q 003268 303 PMDRLICGDVGF----GKTEVAL-RAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 303 ~~d~LI~g~TGs----GKT~val-~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~ 377 (835)
..++-+.-|... |-...++ ..+...+.+.+.++|.++||..|.-.+.++++.+. ..+...||..+...+..
T Consensus 220 ~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~----~~i~~HHgSlSre~R~~ 295 (814)
T COG1201 220 KLEIKVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP----DIIEVHHGSLSRELRLE 295 (814)
T ss_pred cceEEEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC----CceeeecccccHHHHHH
Confidence 445555555554 4444443 33445667778999999999999999999987542 67889999999999999
Q ss_pred HHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 378 ~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
.-+.+++|+.+.+|||.++= -.++..++++||
T Consensus 296 vE~~lk~G~lravV~TSSLE-LGIDiG~vdlVI 327 (814)
T COG1201 296 VEERLKEGELKAVVATSSLE-LGIDIGDIDLVI 327 (814)
T ss_pred HHHHHhcCCceEEEEccchh-hccccCCceEEE
Confidence 99999999999999996533 235667777776
No 476
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.47 E-value=0.98 Score=47.22 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=39.0
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+.+.-+++.|++|+|||..++..+...+.+|..++++.-.. -..|+.+++..
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~ 65 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKS 65 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHH
Confidence 34677899999999999988887877777888888876543 35565555543
No 477
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.46 E-value=1 Score=47.22 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.4
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
+.+..+++.|++|+|||..++..+...+.++..++++.-
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456789999999999999877666666666777777764
No 478
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=86.37 E-value=5.4 Score=53.07 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCC-CccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVG-FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TG-sGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~g 360 (835)
+++.|..|+..++.+ ++.-.++.+.-| +|||...-......-.+|+.|.+|+|+..-+.++.+.. +
T Consensus 282 ~~~~q~~Av~~il~d-----r~~v~iv~~~GgAtGKtt~l~~l~~~a~~~G~~V~~lApt~~a~~~L~e~~--------g 348 (1623)
T PRK14712 282 RTAGYSDAVSVLAQD-----RPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDE--------R 348 (1623)
T ss_pred cchhHHHHHHHHhcC-----CCceEEEEecccccccHHHHHHHHHHHHhCCcEEEEEeCCHHHHHHHHhcc--------C
Confidence 467899999998742 222334444444 89998754222223347999999999998887654331 2
Q ss_pred cEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHh--hcCCceEEEe
Q 003268 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS--FKISVDVLTL 437 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~--~~~~~~vL~l 437 (835)
+.-..+.++ ..+.....+..=.++||||+..++..+...|.. ...+.++|++
T Consensus 349 i~a~Tva~~-------------------------~~~l~~~~~~~~~ilIVDEA~~Ls~rdm~~Ll~~A~~~garVllg 402 (1623)
T PRK14712 349 LSGELITGR-------------------------RQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLIT 402 (1623)
T ss_pred CCchhhhhh-------------------------hhhhcccCCCCCcEEEEECCCcCCHHHHHHHHHHHHhcCCEEEEE
Confidence 221111110 001111112223799999999999977666544 2456776644
No 479
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=86.29 E-value=6.8 Score=39.77 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=26.5
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
+.|.--.|=|||.+|+-.++.++..|.+|+++.=.+-
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg 42 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKG 42 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecC
Confidence 4455556999999999999999999999999975554
No 480
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=86.25 E-value=3.1 Score=46.52 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
....++|.|++|+||+.+|
T Consensus 21 ~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIA 39 (329)
T ss_pred CCCCEEEECCCCChHHHHH
Confidence 3578999999999999875
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.03 E-value=0.97 Score=48.52 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=41.6
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
+.+..++|.|++|||||..++..+...+..|..++++.- .+...++.+.+.+ |+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~-~e~~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST-EESPEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe-cCCHHHHHHHHHH-cC
Confidence 557889999999999999999988888888888887664 3455565666654 44
No 482
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=86.00 E-value=2.1 Score=53.52 Aligned_cols=78 Identities=13% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
++++||.+|+..-+...++.+.+.+. +++.|..++|..+..++...++...+|..+|||+|. .....+.+.++.+||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-IAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-IAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-hHhhcccccCceEEE
Confidence 57899999999989888888876543 368999999999999999999988999999999996 333446667777655
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
=
T Consensus 286 D 286 (819)
T TIGR01970 286 D 286 (819)
T ss_pred E
Confidence 3
No 483
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.85 E-value=5.9 Score=49.21 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=17.2
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..++.+|+.||+|+|||..+-
T Consensus 485 ~~~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 346679999999999998753
No 484
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=85.24 E-value=3.2 Score=53.04 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=64.5
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
+..++|.|.++.-+.++++.+... |+.+..++++.+..++....+....|+++|||+|. .+...+++.++.+||
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~-----Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATd-AFGMGIDkPDVR~VI 753 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF-----GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATV-AFGMGINKPDVRFVI 753 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC-----CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEec-hhhcCCCccCCcEEE
Confidence 456888999999898888887652 78999999999999999999999999999999995 456668888999988
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
-
T Consensus 754 H 754 (1195)
T PLN03137 754 H 754 (1195)
T ss_pred E
Confidence 4
No 485
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=85.22 E-value=6.6 Score=42.33 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~ 347 (835)
|+++|..||+|+|||..|-.. ....+.-++++-.++|.-.|
T Consensus 151 PknVLFyGppGTGKTm~Akal----ane~kvp~l~vkat~liGeh 191 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKAL----ANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cceeEEECCCCccHHHHHHHH----hcccCCceEEechHHHHHHH
Confidence 789999999999999654211 12234456666666665544
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.17 E-value=4.3 Score=45.65 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVL 343 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~L 343 (835)
+..++++||||||||+.. .+++..+.. +.+++.+--..++
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhh
Confidence 357899999999999864 444444442 3566666555554
No 487
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=85.13 E-value=7.1 Score=46.98 Aligned_cols=148 Identities=20% Similarity=0.218 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCC-EEEEEcccHHHHHHHHHHHHHhhcCCC-
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSKYP- 359 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~-qvlVLvPtr~La~Q~~~~~~~~f~~~~- 359 (835)
-|-+|.+|+......+.+..-..-+-+.|.-|-||+.+.-+++..++.-|. .+.|..|.-+=....++-+.+-|....
T Consensus 254 kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkTlFeFv~kGfDaL~Y 333 (1011)
T KOG2036|consen 254 KTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKTLFEFVFKGFDALEY 333 (1011)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHHHHHHHHcchhhhcc
Confidence 388999999888877766555556778899999999887777777777775 566778887655555544332222110
Q ss_pred --CcEEEEecCCCCHHHHHHHHHhHhcCCcceEe-cch-Hhhh-----cccccccccEEEeccccccchhhHHHHHhhcC
Q 003268 360 --DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV-GTH-SLLG-----SRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI 430 (835)
Q Consensus 360 --gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIII-gT~-~~L~-----~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~ 430 (835)
.+...++.+.. . +-+ +.+ ++|=| .-| +.++ +...+....+||||||--+-......+.
T Consensus 334 qeh~Dy~iI~s~n-p-~fk---kai----vRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAIPLplvk~Li---- 400 (1011)
T KOG2036|consen 334 QEHVDYDIIQSTN-P-DFK---KAI----VRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAIPLPLVKKLI---- 400 (1011)
T ss_pred hhhcchhhhhhcC-h-hhh---hhE----EEEEEeccccceeEeeccchhhhccCCcEEEechhhcCCHHHHHHhh----
Confidence 00001111100 0 000 000 11111 111 1111 2234667789999999887665544442
Q ss_pred CceEEEeecCCC
Q 003268 431 SVDVLTLSATPI 442 (835)
Q Consensus 431 ~~~vL~lSATp~ 442 (835)
...+++|+.|..
T Consensus 401 gPylVfmaSTin 412 (1011)
T KOG2036|consen 401 GPYLVFMASTIN 412 (1011)
T ss_pred cceeEEEeeccc
Confidence 457788888864
No 488
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=85.09 E-value=1.3 Score=46.26 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=31.6
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
+.+.-.+++|++|+|||..++..+...+..+..++++.-
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 446778999999999999988877777777788887753
No 489
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=85.04 E-value=1 Score=52.65 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=42.2
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR 368 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g 368 (835)
.+++++|+||||||..++.|.+. .....++|.=|--+|........++. |-+|.++.-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~~~s~iV~D~KgEl~~~t~~~r~~~-----G~~V~vldp 102 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NYPGSMIVTDPKGELYEKTAGYRKKR-----GYKVYVLDP 102 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hccCCEEEEECCCcHHHHHHHHHHHC-----CCEEEEeec
Confidence 46899999999999998877653 33447888889989887766655542 345655543
No 490
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.04 E-value=1.4 Score=51.91 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEE
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVL 337 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVL 337 (835)
++|.|.+.+..+.. .+. .-++++||||||||... .+++..+.. +..++.+
T Consensus 226 ~~~~~~~~l~~~~~----~~~-GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 226 MSPELLSRFERLIR----RPH-GIILVTGPTGSGKTTTL-YAALSRLNTPERNILTV 276 (486)
T ss_pred CCHHHHHHHHHHHh----cCC-CEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEEE
Confidence 46888888877653 222 34789999999999864 334444432 3444444
No 491
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=84.82 E-value=4.3 Score=50.02 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
...+++|.|++|+|||.+|
T Consensus 398 ~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 398 SDSTVLILGETGTGKELIA 416 (686)
T ss_pred CCCCEEEECCCCcCHHHHH
Confidence 3568999999999999865
No 492
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.78 E-value=1.5 Score=46.31 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=37.6
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+.+.-+++.|++|+|||..+...+...+.+|..++++.=... ..++.+.+.+
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~ 74 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMES 74 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHH
Confidence 456788999999999999887777777777888888764322 3344454443
No 493
>PHA02542 41 41 helicase; Provisional
Probab=84.49 E-value=1.9 Score=50.72 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=34.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+.-++|.|.+|.|||..++..+......|..|+++.-- .-..|+..++.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLE-M~~~ql~~Rl~ 238 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISME-MAEEVIAKRID 238 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHH
Confidence 44567799999999999988877776778888877522 12234455553
No 494
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=84.41 E-value=3.1 Score=42.39 Aligned_cols=36 Identities=3% Similarity=-0.015 Sum_probs=29.2
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
+.|.-..|=|||.+|+-.++.++..|.+|+|+.=.+
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlK 59 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLK 59 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEec
Confidence 344444599999999999999999999999987443
No 495
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=84.40 E-value=3.8 Score=47.27 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=40.6
Q ss_pred CCCChHHHHHHHhCCCCCCHHHHHH-HHHHHHh--hhcCCCCCcEEEEccCCCccHHHHHHHHHH-HHhCC
Q 003268 265 YPKNPAIAEFAAQFPYEPTPDQKKA-FLDVERD--LTERETPMDRLICGDVGFGKTEVALRAIFC-VVSAG 331 (835)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~tp~Q~~A-I~~Il~~--l~~~~~~~d~LI~g~TGsGKT~val~a~~~-~~~~g 331 (835)
|..++|..-+..+..|+|+....++ +..+.+. +- +.+.|+++.||+|+|||-.|...... ++..|
T Consensus 170 FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fv--e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 170 FTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLV--EPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred cCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHH--hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 5666787888887777765443322 2222221 22 34679999999999999776543333 45556
No 496
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.25 E-value=0.71 Score=50.73 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.3
Q ss_pred CcEEEEccCCCccHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~ 322 (835)
.|+|+.||||||||+.|-.
T Consensus 98 SNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred ccEEEECCCCCcHHHHHHH
Confidence 5899999999999987643
No 497
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=84.20 E-value=2.5 Score=51.71 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC----CEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g----~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ...++|.+..|||||.+...-+...+..+ .+++++.=|+-.|.++.+++...++
T Consensus 2 ~Ln~~Q~~av~~~---------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP---------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC---------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999997543 24688899999999999766655555442 4788889899999999999887665
Q ss_pred C-C-CCcEEEEecC
Q 003268 357 K-Y-PDIKVGLLSR 368 (835)
Q Consensus 357 ~-~-~gi~V~~l~g 368 (835)
. . .++.++.+|+
T Consensus 73 ~~~~~~~~v~TfHs 86 (655)
T COG0210 73 LPAAEGLTVGTFHS 86 (655)
T ss_pred cccccCcEEeeHHH
Confidence 2 1 1144555554
No 498
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.12 E-value=8.8 Score=47.71 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.+..+|++||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 3567999999999999764
No 499
>PRK02362 ski2-like helicase; Provisional
Probab=84.09 E-value=4.6 Score=50.17 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=64.1
Q ss_pred HHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC-------------------------------CCcEEEEecCCCCH
Q 003268 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY-------------------------------PDIKVGLLSRFQSK 372 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~-------------------------------~gi~V~~l~g~~s~ 372 (835)
+...+..+.+++|.+|++.-+...+..+...+... ....|+++|++.+.
T Consensus 236 ~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~ 315 (737)
T PRK02362 236 VLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSR 315 (737)
T ss_pred HHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCH
Confidence 33445578899999999988777777665432200 01258899999999
Q ss_pred HHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEe
Q 003268 373 AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 373 ~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVII 411 (835)
.++....+..++|.++|+|+|..+- ..+++....+||-
T Consensus 316 ~eR~~ve~~Fr~G~i~VLvaT~tla-~GvnlPa~~VVI~ 353 (737)
T PRK02362 316 EHRELVEDAFRDRLIKVISSTPTLA-AGLNLPARRVIIR 353 (737)
T ss_pred HHHHHHHHHHHcCCCeEEEechhhh-hhcCCCceEEEEe
Confidence 9999999999999999999997543 3466666666664
No 500
>PRK14701 reverse gyrase; Provisional
Probab=84.01 E-value=5.6 Score=53.43 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=64.2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC----CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCcc-----CCCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP----GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVES-----GLDIQ 561 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p----~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~-----GIDIp 561 (835)
++.+++|++|+++-+..+++.++.... +..++.+||+++..++..+++.+.+|+.+|||+|+-.-. ... .
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~ 199 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-L 199 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-C
Confidence 567999999999988888888876432 467889999999999999999999999999999984221 111 3
Q ss_pred CcCEEEEecCCC
Q 003268 562 NANTIIVQDVQQ 573 (835)
Q Consensus 562 ~v~~VIi~d~p~ 573 (835)
+++++|+..++.
T Consensus 200 ~i~~iVVDEAD~ 211 (1638)
T PRK14701 200 KFDFIFVDDVDA 211 (1638)
T ss_pred CCCEEEEECcee
Confidence 477888877764
Done!