Query 003268
Match_columns 835
No_of_seqs 662 out of 4400
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eyq_A TRCF, transcription-rep 100.0 2.2E-98 7E-103 942.1 59.2 698 105-827 443-1147(1151)
2 1gm5_A RECG; helicase, replica 100.0 1.5E-57 5E-62 549.7 33.8 430 220-657 302-746 (780)
3 2db3_A ATP-dependent RNA helic 100.0 3E-44 1E-48 408.9 36.6 323 266-603 62-408 (434)
4 2i4i_A ATP-dependent RNA helic 100.0 8.5E-43 2.9E-47 391.1 34.5 324 266-604 21-385 (417)
5 2oca_A DAR protein, ATP-depend 100.0 1.3E-45 4.4E-50 427.2 10.9 387 188-599 3-452 (510)
6 1xti_A Probable ATP-dependent 100.0 8E-42 2.7E-46 379.6 37.7 325 265-602 13-357 (391)
7 1hv8_A Putative ATP-dependent 100.0 1.1E-41 3.6E-46 374.0 35.7 323 265-604 11-347 (367)
8 3fht_A ATP-dependent RNA helic 100.0 8.3E-42 2.8E-46 381.6 35.5 323 266-602 31-379 (412)
9 3eiq_A Eukaryotic initiation f 100.0 2.2E-42 7.5E-47 387.0 29.9 323 266-602 46-387 (414)
10 1s2m_A Putative ATP-dependent 100.0 1.5E-41 5.3E-46 379.2 36.5 325 264-603 25-366 (400)
11 2j0s_A ATP-dependent RNA helic 100.0 6.1E-42 2.1E-46 384.1 32.5 322 267-603 44-384 (410)
12 3pey_A ATP-dependent RNA helic 100.0 3.4E-41 1.2E-45 373.6 35.9 325 262-602 7-356 (395)
13 3oiy_A Reverse gyrase helicase 100.0 6E-42 2.1E-46 385.9 29.9 309 270-599 10-362 (414)
14 3i5x_A ATP-dependent RNA helic 100.0 1.4E-41 4.8E-46 398.0 33.1 325 270-603 83-450 (563)
15 2v1x_A ATP-dependent DNA helic 100.0 7.3E-41 2.5E-45 394.9 35.7 319 265-602 26-374 (591)
16 3sqw_A ATP-dependent RNA helic 100.0 4.3E-41 1.5E-45 396.3 33.1 325 270-603 32-399 (579)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1E-40 3.4E-45 388.9 33.9 316 266-602 8-343 (523)
18 3fmp_B ATP-dependent RNA helic 100.0 1.2E-42 4.2E-47 399.4 15.4 323 266-602 98-446 (479)
19 2z0m_A 337AA long hypothetical 100.0 2.9E-40 1E-44 358.7 31.9 305 270-600 5-321 (337)
20 1fuu_A Yeast initiation factor 100.0 1.6E-41 5.6E-46 377.0 19.4 324 265-604 26-368 (394)
21 2va8_A SSO2462, SKI2-type heli 100.0 1E-39 3.4E-44 393.7 26.3 318 265-603 13-409 (715)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.3E-39 4.6E-44 392.0 22.9 311 270-603 14-389 (702)
23 2zj8_A DNA helicase, putative 100.0 1.1E-39 3.7E-44 393.9 21.8 319 265-603 6-388 (720)
24 3l9o_A ATP-dependent RNA helic 100.0 4.8E-39 1.7E-43 402.3 25.6 309 271-602 174-597 (1108)
25 3fho_A ATP-dependent RNA helic 100.0 9.9E-39 3.4E-43 370.7 22.4 318 270-603 130-471 (508)
26 4a2p_A RIG-I, retinoic acid in 100.0 2.4E-38 8.1E-43 367.8 24.2 312 277-603 3-509 (556)
27 4ddu_A Reverse gyrase; topoiso 100.0 4.7E-38 1.6E-42 393.2 26.4 281 272-573 69-388 (1104)
28 3tbk_A RIG-I helicase domain; 100.0 7.7E-38 2.6E-42 362.6 25.1 311 279-604 2-509 (555)
29 2xau_A PRE-mRNA-splicing facto 100.0 1.1E-38 3.7E-43 386.7 16.7 409 264-702 76-536 (773)
30 2xgj_A ATP-dependent RNA helic 100.0 3.9E-37 1.3E-41 382.0 30.3 303 275-602 80-499 (1010)
31 1wp9_A ATP-dependent RNA helic 100.0 8.4E-37 2.9E-41 345.0 28.9 307 280-604 8-477 (494)
32 2v6i_A RNA helicase; membrane, 100.0 1.3E-37 4.5E-42 354.3 19.6 295 303-642 2-337 (431)
33 3dmq_A RNA polymerase-associat 100.0 5.2E-36 1.8E-40 371.7 32.0 407 152-602 53-615 (968)
34 4a4z_A Antiviral helicase SKI2 100.0 2.5E-36 8.7E-41 374.6 27.7 306 273-601 31-491 (997)
35 2ykg_A Probable ATP-dependent 100.0 6E-37 2E-41 367.5 21.0 315 274-603 6-517 (696)
36 4gl2_A Interferon-induced heli 100.0 6.8E-37 2.3E-41 367.2 21.3 309 279-603 5-520 (699)
37 4a2q_A RIG-I, retinoic acid in 100.0 4.3E-36 1.5E-40 366.4 25.7 310 278-603 245-750 (797)
38 2fwr_A DNA repair protein RAD2 100.0 5.8E-37 2E-41 351.3 17.0 300 278-613 90-465 (472)
39 1yks_A Genome polyprotein [con 100.0 3.6E-37 1.2E-41 351.6 14.6 288 303-649 8-337 (440)
40 2wv9_A Flavivirin protease NS2 100.0 4.6E-37 1.6E-41 366.7 14.2 321 281-642 215-575 (673)
41 1gku_B Reverse gyrase, TOP-RG; 100.0 1.6E-35 5.4E-40 370.0 20.9 277 272-572 48-352 (1054)
42 1tf5_A Preprotein translocase 100.0 6.7E-34 2.3E-38 339.1 32.6 317 278-617 80-561 (844)
43 4a2w_A RIG-I, retinoic acid in 100.0 9.2E-35 3.1E-39 359.8 22.3 311 278-603 245-750 (936)
44 4f92_B U5 small nuclear ribonu 100.0 3.3E-34 1.1E-38 370.4 27.3 309 281-602 926-1308(1724)
45 2jlq_A Serine protease subunit 100.0 4.6E-35 1.6E-39 335.1 16.2 279 279-602 2-311 (451)
46 3h1t_A Type I site-specific re 100.0 1.1E-33 3.7E-38 333.7 22.5 291 280-591 177-545 (590)
47 4f92_B U5 small nuclear ribonu 100.0 2.5E-33 8.7E-38 362.2 26.5 311 280-604 78-475 (1724)
48 2fsf_A Preprotein translocase 100.0 7.4E-33 2.5E-37 329.4 27.2 304 278-604 71-585 (853)
49 1nkt_A Preprotein translocase 100.0 6E-32 2E-36 321.9 33.2 306 276-604 106-619 (922)
50 2z83_A Helicase/nucleoside tri 100.0 4.3E-33 1.5E-37 319.6 18.5 262 303-602 21-313 (459)
51 3o8b_A HCV NS3 protease/helica 100.0 6E-33 2.1E-37 327.8 16.8 258 303-606 232-518 (666)
52 2whx_A Serine protease/ntpase/ 100.0 4.3E-33 1.5E-37 330.0 15.0 276 280-600 170-476 (618)
53 3rc3_A ATP-dependent RNA helic 100.0 9.6E-32 3.3E-36 320.3 21.4 299 270-602 117-445 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 3.1E-30 1E-34 297.7 22.7 304 278-603 34-454 (500)
55 1z3i_X Similar to RAD54-like; 100.0 6.5E-27 2.2E-31 279.0 35.0 317 280-604 54-530 (644)
56 3mwy_W Chromo domain-containin 100.0 9.7E-28 3.3E-32 292.8 25.3 314 280-604 235-686 (800)
57 3jux_A Protein translocase sub 100.0 2.7E-26 9.4E-31 268.2 32.2 306 274-603 68-588 (822)
58 1c4o_A DNA nucleotide excision 99.9 1.7E-25 5.9E-30 267.3 35.9 166 431-604 380-552 (664)
59 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.2E-26 4.2E-31 287.2 26.3 308 280-600 270-707 (1038)
60 2d7d_A Uvrabc system protein B 99.9 1.2E-24 4E-29 260.0 35.1 165 431-603 386-557 (661)
61 3fe2_A Probable ATP-dependent 99.9 1.8E-23 6.3E-28 218.7 21.7 185 266-462 35-238 (242)
62 3iuy_A Probable ATP-dependent 99.9 2.1E-23 7.1E-28 215.8 20.5 177 270-459 31-226 (228)
63 1t6n_A Probable ATP-dependent 99.9 3.7E-23 1.3E-27 212.6 22.2 189 261-459 15-218 (220)
64 2ipc_A Preprotein translocase 99.9 1.6E-22 5.5E-27 240.3 29.5 126 276-417 74-214 (997)
65 3ly5_A ATP-dependent RNA helic 99.9 4.8E-23 1.6E-27 218.8 21.1 175 270-456 65-257 (262)
66 2pl3_A Probable ATP-dependent 99.9 8E-23 2.7E-27 212.5 22.0 184 265-461 30-232 (236)
67 2oxc_A Probable ATP-dependent 99.9 7.2E-23 2.5E-27 212.6 20.8 185 265-461 29-228 (230)
68 1vec_A ATP-dependent RNA helic 99.9 8.7E-23 3E-27 207.2 20.8 183 265-458 8-204 (206)
69 3bor_A Human initiation factor 99.9 4.5E-23 1.6E-27 215.2 18.4 186 265-461 35-234 (237)
70 1q0u_A Bstdead; DEAD protein, 99.9 6.7E-23 2.3E-27 210.9 18.3 187 264-461 8-211 (219)
71 3fmo_B ATP-dependent RNA helic 99.9 8E-23 2.7E-27 221.6 18.0 184 266-461 98-297 (300)
72 1qde_A EIF4A, translation init 99.9 1.5E-22 5E-27 208.5 19.0 184 266-462 20-217 (224)
73 3ber_A Probable ATP-dependent 99.9 3.9E-22 1.3E-26 210.2 22.5 185 265-461 48-247 (249)
74 3dkp_A Probable ATP-dependent 99.9 7.8E-23 2.7E-27 213.8 16.4 185 267-462 36-241 (245)
75 2gxq_A Heat resistant RNA depe 99.9 3.4E-22 1.2E-26 202.8 20.6 182 265-460 6-204 (207)
76 1wrb_A DJVLGB; RNA helicase, D 99.9 2.4E-22 8.1E-27 211.3 17.4 181 270-462 34-240 (253)
77 2hjv_A ATP-dependent RNA helic 99.8 3.2E-20 1.1E-24 182.9 15.3 109 491-602 34-142 (163)
78 3eaq_A Heat resistant RNA depe 99.8 2.5E-20 8.4E-25 192.0 14.6 111 490-603 29-139 (212)
79 2p6n_A ATP-dependent RNA helic 99.8 7.7E-20 2.6E-24 185.5 15.8 131 469-602 30-161 (191)
80 2rb4_A ATP-dependent RNA helic 99.8 6.8E-20 2.3E-24 182.5 15.1 121 481-603 21-148 (175)
81 1t5i_A C_terminal domain of A 99.8 9.4E-20 3.2E-24 181.5 13.6 109 491-602 30-138 (172)
82 1fuk_A Eukaryotic initiation f 99.8 7.1E-20 2.4E-24 180.7 12.3 110 491-603 29-138 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.4E-19 4.8E-24 182.5 14.3 112 490-604 44-155 (185)
84 3i32_A Heat resistant RNA depe 99.8 1.2E-19 4.1E-24 196.7 13.7 110 491-603 27-136 (300)
85 1rif_A DAR protein, DNA helica 99.8 3.3E-19 1.1E-23 190.8 15.2 150 280-444 112-265 (282)
86 2vl7_A XPD; helicase, unknown 99.8 6.4E-19 2.2E-23 205.9 18.2 291 279-598 5-518 (540)
87 3llm_A ATP-dependent RNA helic 99.8 2.1E-18 7.3E-23 179.8 16.1 157 273-445 53-222 (235)
88 3b6e_A Interferon-induced heli 99.8 6.4E-19 2.2E-23 179.1 10.9 151 277-440 29-216 (216)
89 2yjt_D ATP-dependent RNA helic 99.6 3.2E-20 1.1E-24 184.2 0.0 110 491-603 29-138 (170)
90 2fz4_A DNA repair protein RAD2 99.8 3.1E-18 1.1E-22 179.4 13.6 140 277-444 89-231 (237)
91 2qsr_A Transcription-repair co 99.7 1.7E-17 5.7E-22 165.3 15.8 146 681-828 8-157 (173)
92 3crv_A XPD/RAD3 related DNA he 99.7 1.7E-15 5.8E-20 177.4 29.7 278 280-572 2-472 (551)
93 4a15_A XPD helicase, ATP-depen 99.6 4.6E-14 1.6E-18 167.4 26.1 85 280-368 2-87 (620)
94 1z5z_A Helicase of the SNF2/RA 99.6 7.3E-15 2.5E-19 156.9 11.5 123 480-604 100-226 (271)
95 3mlq_E Transcription-repair co 99.4 7.5E-14 2.6E-18 118.3 2.5 69 153-226 2-71 (71)
96 2lqk_A Transcriptional regulat 98.0 5E-09 1.7E-13 88.5 0.0 50 153-204 6-57 (70)
97 1w36_D RECD, exodeoxyribonucle 98.3 2.2E-06 7.5E-11 101.4 13.0 150 270-438 137-296 (608)
98 4b3f_X DNA-binding protein smu 98.3 5.1E-05 1.7E-09 90.3 24.0 68 280-353 188-255 (646)
99 3upu_A ATP-dependent DNA helic 98.1 2E-05 6.7E-10 89.9 15.0 134 279-436 23-160 (459)
100 3lfu_A DNA helicase II; SF1 he 98.0 0.0001 3.4E-09 87.2 19.4 80 281-369 9-93 (647)
101 2xzl_A ATP-dependent helicase 98.0 3.4E-05 1.2E-09 93.9 15.6 67 280-353 359-426 (802)
102 2gk6_A Regulator of nonsense t 98.0 5.5E-05 1.9E-09 89.7 16.7 67 280-353 179-246 (624)
103 3e1s_A Exodeoxyribonuclease V, 98.0 2.9E-05 9.8E-10 91.1 13.3 124 279-436 187-311 (574)
104 2wjy_A Regulator of nonsense t 97.9 0.00012 4E-09 89.1 15.9 67 280-353 355-422 (800)
105 1uaa_A REP helicase, protein ( 97.5 0.0019 6.4E-08 77.1 19.2 80 281-369 2-87 (673)
106 2j9r_A Thymidine kinase; TK1, 97.4 0.00048 1.7E-08 70.5 10.2 108 303-440 28-136 (214)
107 2orw_A Thymidine kinase; TMTK, 97.4 0.00066 2.2E-08 67.7 10.1 39 303-341 3-41 (184)
108 1xx6_A Thymidine kinase; NESG, 97.3 0.00067 2.3E-08 68.3 9.2 39 303-341 8-46 (191)
109 2b8t_A Thymidine kinase; deoxy 96.9 0.00059 2E-08 70.4 4.5 40 302-341 11-50 (223)
110 3e2i_A Thymidine kinase; Zn-bi 96.9 0.003 1E-07 64.6 9.5 105 302-435 27-132 (219)
111 1a5t_A Delta prime, HOLB; zinc 96.8 0.0064 2.2E-07 66.0 12.1 45 282-326 3-47 (334)
112 1w4r_A Thymidine kinase; type 96.6 0.0035 1.2E-07 63.1 7.4 38 303-340 20-57 (195)
113 3hgt_A HDA1 complex subunit 3; 96.6 0.0075 2.6E-07 65.3 10.2 117 480-604 112-239 (328)
114 2o0j_A Terminase, DNA packagin 96.5 0.033 1.1E-06 62.0 15.0 75 278-359 160-236 (385)
115 3cpe_A Terminase, DNA packagin 96.3 0.054 1.9E-06 63.5 16.7 75 278-359 160-236 (592)
116 2hjv_A ATP-dependent RNA helic 96.3 0.025 8.7E-07 54.5 11.6 92 314-413 20-111 (163)
117 3ec2_A DNA replication protein 96.2 0.027 9.3E-07 54.9 11.5 63 283-346 16-81 (180)
118 1fuk_A Eukaryotic initiation f 96.2 0.028 9.5E-07 54.3 11.0 90 316-413 17-106 (165)
119 2orv_A Thymidine kinase; TP4A 96.2 0.006 2.1E-07 63.0 6.4 39 303-341 19-57 (234)
120 3te6_A Regulatory protein SIR3 96.0 0.028 9.7E-07 60.8 11.1 38 285-322 27-64 (318)
121 3vkw_A Replicase large subunit 96.0 0.0094 3.2E-07 67.3 7.5 102 304-437 162-266 (446)
122 2p65_A Hypothetical protein PF 96.0 0.037 1.3E-06 53.2 10.9 38 286-324 27-64 (187)
123 1t5i_A C_terminal domain of A 96.0 0.028 9.7E-07 54.8 10.1 92 314-413 16-107 (172)
124 2rb4_A ATP-dependent RNA helic 96.0 0.019 6.6E-07 56.0 8.9 76 330-411 33-108 (175)
125 1fnn_A CDC6P, cell division co 96.0 0.093 3.2E-06 57.0 15.3 55 283-338 22-80 (389)
126 2jgn_A DBX, DDX3, ATP-dependen 96.0 0.015 5.2E-07 57.6 8.1 92 313-411 29-120 (185)
127 2d7d_A Uvrabc system protein B 95.9 0.026 8.9E-07 67.2 11.4 99 315-419 429-527 (661)
128 1l8q_A Chromosomal replication 95.8 0.023 7.9E-07 61.0 9.6 37 302-338 36-72 (324)
129 3bos_A Putative DNA replicatio 95.8 0.019 6.4E-07 57.9 8.3 38 286-324 36-73 (242)
130 1c4o_A DNA nucleotide excision 95.8 0.043 1.5E-06 65.3 12.5 99 315-419 423-521 (664)
131 2p6n_A ATP-dependent RNA helic 95.8 0.034 1.1E-06 55.5 9.8 75 331-411 54-128 (191)
132 1gm5_A RECG; helicase, replica 95.8 0.023 7.8E-07 68.9 10.0 92 486-577 411-505 (780)
133 3eaq_A Heat resistant RNA depe 95.7 0.049 1.7E-06 55.0 11.0 92 312-411 14-105 (212)
134 2qby_B CDC6 homolog 3, cell di 95.5 0.064 2.2E-06 58.4 11.8 40 283-322 25-64 (384)
135 1pjr_A PCRA; DNA repair, DNA r 95.5 0.018 6.2E-07 69.3 7.9 81 280-369 10-95 (724)
136 1njg_A DNA polymerase III subu 95.4 0.096 3.3E-06 52.1 11.8 21 302-322 44-64 (250)
137 3pfi_A Holliday junction ATP-d 95.4 0.15 5E-06 54.8 14.1 21 301-321 53-73 (338)
138 2chg_A Replication factor C sm 95.4 0.084 2.9E-06 51.9 11.0 35 287-322 23-57 (226)
139 2gno_A DNA polymerase III, gam 95.2 0.11 3.9E-06 55.7 12.1 37 286-323 2-38 (305)
140 3u61_B DNA polymerase accessor 95.2 0.065 2.2E-06 57.3 10.3 36 286-321 31-66 (324)
141 3u4q_A ATP-dependent helicase/ 95.1 0.024 8.3E-07 72.2 7.5 68 280-356 9-82 (1232)
142 2i4i_A ATP-dependent RNA helic 95.0 0.075 2.6E-06 58.4 10.4 86 320-411 265-350 (417)
143 3kl4_A SRP54, signal recogniti 95.0 0.17 5.7E-06 57.1 13.2 117 303-441 97-223 (433)
144 2v1u_A Cell division control p 95.0 0.12 4.2E-06 55.8 11.8 23 300-322 41-63 (387)
145 3syl_A Protein CBBX; photosynt 94.9 0.13 4.6E-06 54.2 11.5 22 301-322 65-86 (309)
146 3i5x_A ATP-dependent RNA helic 94.8 0.19 6.5E-06 57.9 13.3 82 329-413 337-418 (563)
147 2eyq_A TRCF, transcription-rep 94.8 0.099 3.4E-06 66.1 11.6 96 323-422 804-899 (1151)
148 2kjq_A DNAA-related protein; s 94.7 0.038 1.3E-06 52.9 6.1 20 302-321 35-54 (149)
149 1jr3_A DNA polymerase III subu 94.7 0.15 5.1E-06 55.2 11.5 37 286-322 21-57 (373)
150 3i32_A Heat resistant RNA depe 94.7 0.11 3.7E-06 55.7 10.0 93 313-413 12-104 (300)
151 3co5_A Putative two-component 94.6 0.035 1.2E-06 52.4 5.5 19 302-320 26-44 (143)
152 3pvs_A Replication-associated 94.5 0.029 1E-06 63.6 5.4 20 302-321 49-68 (447)
153 2zpa_A Uncharacterized protein 94.5 0.066 2.2E-06 63.4 8.5 115 281-442 175-289 (671)
154 2z4s_A Chromosomal replication 94.5 0.16 5.6E-06 57.2 11.5 19 303-321 130-148 (440)
155 1d2n_A N-ethylmaleimide-sensit 94.4 0.33 1.1E-05 50.4 12.9 22 301-322 62-83 (272)
156 2bjv_A PSP operon transcriptio 94.4 0.22 7.4E-06 51.6 11.5 19 302-320 28-46 (265)
157 1wp9_A ATP-dependent RNA helic 94.3 0.14 5E-06 56.5 10.5 98 312-415 340-447 (494)
158 3sqw_A ATP-dependent RNA helic 94.3 0.2 6.8E-06 58.3 12.0 84 329-415 286-369 (579)
159 4fcw_A Chaperone protein CLPB; 94.3 0.069 2.4E-06 56.4 7.4 20 304-323 48-67 (311)
160 3n70_A Transport activator; si 94.0 0.048 1.6E-06 51.5 4.8 20 301-320 22-41 (145)
161 3fht_A ATP-dependent RNA helic 94.0 0.23 7.7E-06 54.2 11.0 76 330-411 265-340 (412)
162 1g5t_A COB(I)alamin adenosyltr 93.9 0.15 5.1E-06 51.3 8.6 35 304-338 29-63 (196)
163 3eie_A Vacuolar protein sortin 93.9 0.33 1.1E-05 52.1 12.0 19 303-321 51-69 (322)
164 1xti_A Probable ATP-dependent 93.9 0.14 4.8E-06 55.5 9.2 79 330-414 249-327 (391)
165 3pey_A ATP-dependent RNA helic 93.9 0.16 5.5E-06 54.9 9.5 81 330-416 242-322 (395)
166 1hv8_A Putative ATP-dependent 93.8 0.15 5.2E-06 54.5 9.1 78 329-412 236-313 (367)
167 1iqp_A RFCS; clamp loader, ext 93.8 0.37 1.3E-05 50.8 12.0 36 286-322 30-65 (327)
168 3h4m_A Proteasome-activating n 93.7 0.53 1.8E-05 49.0 12.8 21 301-321 49-69 (285)
169 2oca_A DAR protein, ATP-depend 93.6 0.28 9.6E-06 55.8 11.3 86 326-416 342-427 (510)
170 1s2m_A Putative ATP-dependent 93.5 0.19 6.5E-06 54.8 9.4 77 330-412 257-333 (400)
171 1hqc_A RUVB; extended AAA-ATPa 93.5 0.64 2.2E-05 49.2 13.2 20 302-321 37-56 (324)
172 2l8b_A Protein TRAI, DNA helic 93.5 0.12 4E-06 51.4 6.7 122 281-440 34-158 (189)
173 3uk6_A RUVB-like 2; hexameric 93.4 0.81 2.8E-05 49.4 14.1 40 284-323 50-90 (368)
174 3vfd_A Spastin; ATPase, microt 93.3 0.35 1.2E-05 53.3 11.0 19 303-321 148-166 (389)
175 2qp9_X Vacuolar protein sortin 93.2 1 3.4E-05 49.1 14.5 20 303-322 84-103 (355)
176 2qby_A CDC6 homolog 1, cell di 93.2 0.4 1.4E-05 51.6 11.2 39 284-322 26-64 (386)
177 1sxj_C Activator 1 40 kDa subu 93.2 0.3 1E-05 52.6 10.1 37 286-323 30-66 (340)
178 4b4t_J 26S protease regulatory 93.1 0.93 3.2E-05 50.5 14.0 21 301-321 180-200 (405)
179 2db3_A ATP-dependent RNA helic 93.1 0.35 1.2E-05 54.1 10.8 75 331-411 300-374 (434)
180 2w58_A DNAI, primosome compone 93.1 0.18 6E-06 49.9 7.5 55 283-337 31-88 (202)
181 3pxi_A Negative regulator of g 93.0 0.48 1.6E-05 57.1 12.6 19 305-323 523-541 (758)
182 2yjt_D ATP-dependent RNA helic 92.1 0.018 6.1E-07 56.0 0.0 77 330-412 29-105 (170)
183 2v1x_A ATP-dependent DNA helic 93.0 0.28 9.5E-06 57.5 10.1 76 330-411 266-341 (591)
184 2j0s_A ATP-dependent RNA helic 93.0 0.25 8.4E-06 54.2 9.2 77 330-412 275-351 (410)
185 1sxj_E Activator 1 40 kDa subu 92.8 0.4 1.4E-05 51.6 10.4 35 286-321 19-54 (354)
186 1ojl_A Transcriptional regulat 92.7 0.23 7.7E-06 53.1 8.3 20 301-320 23-42 (304)
187 3d8b_A Fidgetin-like protein 1 92.6 0.51 1.8E-05 51.4 11.1 21 301-321 115-135 (357)
188 1sxj_A Activator 1 95 kDa subu 92.5 0.41 1.4E-05 55.0 10.6 32 303-337 77-108 (516)
189 1oyw_A RECQ helicase, ATP-depe 92.5 0.26 9E-06 56.7 9.0 76 330-411 235-310 (523)
190 2chq_A Replication factor C sm 92.5 0.21 7.1E-06 52.6 7.5 37 286-323 22-58 (319)
191 1jbk_A CLPB protein; beta barr 92.5 1.5 5.1E-05 41.6 13.1 35 288-323 29-63 (195)
192 2qz4_A Paraplegin; AAA+, SPG7, 92.4 1.4 4.9E-05 44.8 13.6 20 302-321 38-57 (262)
193 3hjh_A Transcription-repair-co 92.3 0.39 1.3E-05 54.8 9.9 93 303-402 14-118 (483)
194 3dm5_A SRP54, signal recogniti 92.0 0.48 1.7E-05 53.4 10.1 51 303-353 100-152 (443)
195 1sxj_D Activator 1 41 kDa subu 91.9 0.52 1.8E-05 50.4 10.0 34 287-321 43-76 (353)
196 3cf0_A Transitional endoplasmi 91.9 1.4 4.8E-05 46.6 13.2 21 301-321 47-67 (301)
197 1sxj_B Activator 1 37 kDa subu 91.8 0.34 1.2E-05 51.0 8.2 37 286-323 26-62 (323)
198 3oiy_A Reverse gyrase helicase 91.5 0.31 1E-05 53.8 7.8 82 489-571 61-148 (414)
199 1z5z_A Helicase of the SNF2/RA 91.4 0.55 1.9E-05 49.4 9.2 96 312-411 93-189 (271)
200 3hu3_A Transitional endoplasmi 91.2 1.6 5.5E-05 49.8 13.5 20 301-320 236-255 (489)
201 1xwi_A SKD1 protein; VPS4B, AA 91.2 1.4 4.8E-05 47.3 12.4 19 303-321 45-63 (322)
202 1w5s_A Origin recognition comp 90.5 1.1 3.8E-05 48.9 10.9 40 283-322 27-71 (412)
203 1qvr_A CLPB protein; coiled co 90.3 0.77 2.6E-05 56.1 10.3 25 301-325 189-213 (854)
204 3eiq_A Eukaryotic initiation f 90.2 0.23 7.7E-06 54.3 5.0 77 330-412 279-355 (414)
205 4b4t_H 26S protease regulatory 90.1 2.6 8.8E-05 47.8 13.5 20 301-320 241-260 (467)
206 2r6a_A DNAB helicase, replicat 90.0 0.72 2.5E-05 52.1 9.1 59 289-351 192-251 (454)
207 2zan_A Vacuolar protein sortin 89.9 1.6 5.4E-05 49.1 11.8 20 302-321 166-185 (444)
208 4ddu_A Reverse gyrase; topoiso 89.8 0.84 2.9E-05 57.4 10.3 85 486-571 115-205 (1104)
209 2j37_W Signal recognition part 89.8 8.9 0.00031 43.9 18.0 37 303-339 101-137 (504)
210 1r6b_X CLPA protein; AAA+, N-t 89.6 0.086 3E-06 63.5 1.1 18 305-322 490-507 (758)
211 4a2p_A RIG-I, retinoic acid in 89.5 0.34 1.2E-05 55.2 6.0 98 312-411 369-477 (556)
212 2z43_A DNA repair and recombin 89.3 0.47 1.6E-05 51.0 6.6 50 289-340 95-150 (324)
213 3tbk_A RIG-I helicase domain; 89.2 0.59 2E-05 53.0 7.7 97 313-411 369-476 (555)
214 1xp8_A RECA protein, recombina 89.1 0.4 1.4E-05 52.8 5.9 50 289-341 61-112 (366)
215 2xxa_A Signal recognition part 89.1 0.99 3.4E-05 50.8 9.2 43 303-345 100-145 (433)
216 4gl2_A Interferon-induced heli 89.0 0.23 7.7E-06 58.9 4.1 79 331-411 400-488 (699)
217 1r6b_X CLPA protein; AAA+, N-t 88.9 1.3 4.5E-05 53.1 10.7 36 286-322 191-226 (758)
218 2qgz_A Helicase loader, putati 88.7 0.75 2.6E-05 49.2 7.6 36 303-338 152-188 (308)
219 2q6t_A DNAB replication FORK h 88.4 0.9 3.1E-05 51.1 8.3 60 289-352 189-249 (444)
220 3io5_A Recombination and repai 88.1 0.39 1.3E-05 51.9 4.8 43 301-344 27-71 (333)
221 2z0m_A 337AA long hypothetical 87.7 0.78 2.7E-05 48.3 6.9 75 329-413 218-292 (337)
222 2va8_A SSO2462, SKI2-type heli 87.7 1.9 6.4E-05 51.3 10.9 88 324-412 245-363 (715)
223 2zj8_A DNA helicase, putative 87.6 0.95 3.3E-05 54.0 8.3 87 326-414 232-346 (720)
224 1qvr_A CLPB protein; coiled co 87.6 0.31 1.1E-05 59.6 4.2 20 304-323 589-608 (854)
225 3dmq_A RNA polymerase-associat 87.3 1 3.6E-05 55.8 8.6 96 313-415 487-584 (968)
226 2xau_A PRE-mRNA-splicing facto 87.2 0.86 3E-05 55.1 7.7 81 330-411 302-393 (773)
227 2p6r_A Afuhel308 helicase; pro 87.1 1.4 5E-05 52.3 9.5 87 324-411 235-346 (702)
228 1z63_A Helicase of the SNF2/RA 86.8 1.3 4.5E-05 50.0 8.5 100 312-415 322-422 (500)
229 3bh0_A DNAB-like replicative h 86.6 1.2 4.3E-05 47.5 7.8 62 289-354 57-118 (315)
230 1yks_A Genome polyprotein [con 86.4 0.48 1.6E-05 53.3 4.5 71 330-411 176-246 (440)
231 2ffh_A Protein (FFH); SRP54, s 86.4 2.5 8.6E-05 47.4 10.4 43 303-345 98-142 (425)
232 3mwy_W Chromo domain-containin 86.4 3.5 0.00012 49.9 12.5 97 313-414 554-652 (800)
233 2gxq_A Heat resistant RNA depe 86.3 0.98 3.3E-05 44.3 6.3 78 491-572 71-154 (207)
234 2dr3_A UPF0273 protein PH0284; 86.3 0.56 1.9E-05 47.3 4.6 50 302-352 22-71 (247)
235 1vma_A Cell division protein F 86.2 3 0.0001 44.6 10.5 36 303-338 104-139 (306)
236 3fmp_B ATP-dependent RNA helic 86.0 0.15 5E-06 57.7 0.0 74 331-410 333-406 (479)
237 4a2q_A RIG-I, retinoic acid in 86.0 0.91 3.1E-05 54.9 7.0 98 312-411 610-718 (797)
238 1v5w_A DMC1, meiotic recombina 85.8 1.4 4.7E-05 47.8 7.7 49 290-340 111-165 (343)
239 2ykg_A Probable ATP-dependent 84.9 1.1 3.6E-05 53.0 6.7 80 330-411 397-485 (696)
240 2wv9_A Flavivirin protease NS2 84.8 1.3 4.3E-05 52.8 7.3 70 330-410 409-478 (673)
241 1j8m_F SRP54, signal recogniti 84.1 3.2 0.00011 44.1 9.4 36 303-338 98-133 (297)
242 2fwr_A DNA repair protein RAD2 83.9 0.71 2.4E-05 51.8 4.4 75 329-414 347-421 (472)
243 2zts_A Putative uncharacterize 83.8 0.51 1.7E-05 47.7 2.9 51 301-352 28-79 (251)
244 1t6n_A Probable ATP-dependent 83.7 2 6.9E-05 42.6 7.3 79 492-573 82-169 (220)
245 4a2w_A RIG-I, retinoic acid in 83.7 1.2 4.1E-05 55.0 6.6 99 313-413 611-720 (936)
246 2i1q_A DNA repair and recombin 83.5 1.2 4.1E-05 47.5 5.8 37 288-327 85-122 (322)
247 2v6i_A RNA helicase; membrane, 83.2 2 6.8E-05 48.0 7.7 69 330-409 170-238 (431)
248 3hr8_A Protein RECA; alpha and 82.5 1.2 4E-05 48.9 5.3 52 289-343 48-101 (356)
249 1fuu_A Yeast initiation factor 82.3 0.26 9E-06 53.3 0.0 75 331-411 259-333 (394)
250 3e70_C DPA, signal recognition 81.9 6.1 0.00021 42.6 10.7 37 301-337 127-163 (328)
251 3iuy_A Probable ATP-dependent 81.2 4.9 0.00017 40.0 9.1 78 491-572 93-177 (228)
252 1ofh_A ATP-dependent HSL prote 81.1 1.1 3.7E-05 46.8 4.3 20 302-321 49-68 (310)
253 3rc3_A ATP-dependent RNA helic 80.6 3.9 0.00013 48.6 9.2 76 335-417 324-401 (677)
254 1e9r_A Conjugal transfer prote 80.5 1.4 4.6E-05 49.2 5.0 43 303-345 53-95 (437)
255 2w0m_A SSO2452; RECA, SSPF, un 80.5 1.2 4.1E-05 44.2 4.2 37 302-338 22-58 (235)
256 3fho_A ATP-dependent RNA helic 80.2 0.33 1.1E-05 55.5 -0.1 77 330-412 356-432 (508)
257 1ls1_A Signal recognition part 79.6 6.4 0.00022 41.6 9.7 36 303-338 98-133 (295)
258 2jlq_A Serine protease subunit 79.1 3.3 0.00011 46.5 7.6 70 330-410 187-256 (451)
259 1p9r_A General secretion pathw 79.1 2.2 7.5E-05 47.7 6.1 50 282-337 151-201 (418)
260 3bgw_A DNAB-like replicative h 79.0 2.3 7.7E-05 48.0 6.2 61 289-353 186-246 (444)
261 4a74_A DNA repair and recombin 78.7 1.6 5.4E-05 43.4 4.4 23 302-324 24-46 (231)
262 3fe2_A Probable ATP-dependent 78.5 2.3 7.9E-05 43.1 5.7 78 491-572 101-186 (242)
263 1u94_A RECA protein, recombina 78.3 1.7 5.8E-05 47.6 4.8 40 301-340 61-100 (356)
264 2oxc_A Probable ATP-dependent 78.0 2.3 7.7E-05 42.8 5.3 76 492-572 92-176 (230)
265 2zr9_A Protein RECA, recombina 77.7 1.7 5.9E-05 47.3 4.6 49 289-340 48-98 (349)
266 2px0_A Flagellar biosynthesis 77.6 2.1 7.2E-05 45.5 5.2 37 302-338 104-141 (296)
267 2cvh_A DNA repair and recombin 77.3 2 6.8E-05 42.4 4.6 35 301-338 18-52 (220)
268 3cmu_A Protein RECA, recombina 77.2 2.5 8.7E-05 55.8 6.6 51 290-342 1415-1466(2050)
269 2yvu_A Probable adenylyl-sulfa 77.2 2.2 7.7E-05 41.2 4.9 36 302-337 12-47 (186)
270 2r8r_A Sensor protein; KDPD, P 76.8 2.4 8.1E-05 43.5 5.0 35 303-337 6-40 (228)
271 3cmw_A Protein RECA, recombina 76.8 2.4 8.1E-05 55.3 6.1 47 301-347 1429-1475(1706)
272 3hws_A ATP-dependent CLP prote 76.3 2.1 7.3E-05 46.3 4.9 21 302-322 50-70 (363)
273 1gku_B Reverse gyrase, TOP-RG; 76.2 3.2 0.00011 52.0 7.0 80 488-572 95-185 (1054)
274 2whx_A Serine protease/ntpase/ 76.1 4.3 0.00015 47.7 7.7 70 330-410 354-423 (618)
275 2eyu_A Twitching motility prot 75.9 2.8 9.6E-05 43.6 5.4 20 301-320 23-42 (261)
276 3lw7_A Adenylate kinase relate 75.5 1.2 4E-05 41.9 2.2 20 304-323 2-21 (179)
277 4a1f_A DNAB helicase, replicat 75.2 3.3 0.00011 44.9 6.0 51 302-353 45-95 (338)
278 1vec_A ATP-dependent RNA helic 75.1 4.5 0.00015 39.4 6.5 77 492-572 71-156 (206)
279 3cf2_A TER ATPase, transitiona 75.1 2.9 9.9E-05 50.6 6.0 20 301-320 236-255 (806)
280 4ag6_A VIRB4 ATPase, type IV s 75.0 2.6 8.8E-05 46.3 5.1 40 303-342 35-74 (392)
281 3lda_A DNA repair protein RAD5 74.7 2.2 7.4E-05 47.5 4.4 49 289-339 166-220 (400)
282 3a8t_A Adenylate isopentenyltr 74.4 1.5 5.2E-05 47.6 3.0 21 303-323 40-60 (339)
283 4b4t_L 26S protease subunit RP 74.3 4 0.00014 45.9 6.5 21 301-321 213-233 (437)
284 3foz_A TRNA delta(2)-isopenten 74.1 1.6 5.6E-05 46.9 3.1 22 303-324 10-31 (316)
285 1qhx_A CPT, protein (chloramph 73.9 1.4 4.8E-05 42.1 2.4 20 303-322 3-22 (178)
286 4b4t_M 26S protease regulatory 73.9 3.4 0.00012 46.5 5.8 21 301-321 213-233 (434)
287 1gvn_B Zeta; postsegregational 73.4 2 6.8E-05 45.3 3.6 20 302-321 32-51 (287)
288 2r2a_A Uncharacterized protein 73.2 2.1 7.1E-05 42.9 3.5 24 303-326 5-28 (199)
289 3bor_A Human initiation factor 73.0 3.2 0.00011 42.0 4.9 79 491-572 97-183 (237)
290 2pl3_A Probable ATP-dependent 72.9 4.9 0.00017 40.3 6.3 77 491-572 96-181 (236)
291 3trf_A Shikimate kinase, SK; a 72.8 1.9 6.6E-05 41.5 3.1 22 303-324 5-26 (185)
292 3ber_A Probable ATP-dependent 72.6 17 0.00059 36.8 10.5 77 492-572 111-196 (249)
293 2z83_A Helicase/nucleoside tri 72.1 1.9 6.6E-05 48.5 3.3 70 330-410 189-258 (459)
294 2oap_1 GSPE-2, type II secreti 71.6 3.4 0.00012 47.4 5.2 25 303-328 260-284 (511)
295 4b4t_K 26S protease regulatory 71.3 5.1 0.00017 44.9 6.4 21 301-321 204-224 (428)
296 1nks_A Adenylate kinase; therm 71.3 4.5 0.00015 38.7 5.4 37 305-342 3-39 (194)
297 3vaa_A Shikimate kinase, SK; s 71.2 2.3 7.8E-05 41.8 3.2 22 303-324 25-46 (199)
298 3ly5_A ATP-dependent RNA helic 70.9 14 0.00048 37.9 9.4 78 491-572 125-211 (262)
299 2r44_A Uncharacterized protein 70.8 2.3 7.9E-05 45.2 3.4 33 286-321 32-64 (331)
300 2p5t_B PEZT; postsegregational 70.8 2.1 7E-05 44.1 2.9 23 300-322 29-51 (253)
301 3t15_A Ribulose bisphosphate c 70.6 3.1 0.00011 43.9 4.3 22 301-322 34-55 (293)
302 1wrb_A DJVLGB; RNA helicase, D 70.6 4.8 0.00016 40.9 5.6 78 491-572 99-184 (253)
303 1zu4_A FTSY; GTPase, signal re 70.6 3.6 0.00012 44.2 4.9 36 303-338 105-140 (320)
304 2qmh_A HPR kinase/phosphorylas 70.2 2.3 7.8E-05 42.9 2.9 21 303-323 34-54 (205)
305 1um8_A ATP-dependent CLP prote 70.1 3.7 0.00013 44.6 4.9 21 302-322 71-91 (376)
306 1cr0_A DNA primase/helicase; R 70.0 4.2 0.00014 42.5 5.1 47 289-338 24-71 (296)
307 3h1t_A Type I site-specific re 69.7 12 0.00041 43.1 9.5 86 329-415 437-527 (590)
308 1aky_A Adenylate kinase; ATP:A 69.7 2.6 8.7E-05 42.1 3.2 23 302-324 3-25 (220)
309 1y63_A LMAJ004144AAA protein; 69.6 2.7 9.2E-05 40.8 3.3 22 301-322 8-29 (184)
310 3pxg_A Negative regulator of g 69.6 3.5 0.00012 46.6 4.7 37 286-323 185-221 (468)
311 1z3i_X Similar to RAD54-like; 69.5 20 0.00069 42.0 11.4 98 312-415 396-497 (644)
312 1zd8_A GTP:AMP phosphotransfer 69.5 2.4 8.1E-05 42.6 3.0 22 302-323 6-27 (227)
313 1kht_A Adenylate kinase; phosp 69.4 2 7E-05 41.2 2.4 22 303-324 3-24 (192)
314 1n0w_A DNA repair protein RAD5 69.4 3.4 0.00012 41.3 4.2 38 301-338 22-65 (243)
315 3a4m_A L-seryl-tRNA(SEC) kinas 69.2 4.1 0.00014 42.0 4.8 36 303-338 4-39 (260)
316 3tau_A Guanylate kinase, GMP k 69.1 2.8 9.6E-05 41.6 3.4 20 302-321 7-26 (208)
317 2ehv_A Hypothetical protein PH 69.1 3.5 0.00012 41.4 4.2 36 302-337 29-65 (251)
318 2ze6_A Isopentenyl transferase 68.6 2.4 8.2E-05 43.8 2.8 17 305-321 3-19 (253)
319 1ny5_A Transcriptional regulat 68.4 15 0.0005 40.3 9.4 20 301-320 158-177 (387)
320 1rj9_A FTSY, signal recognitio 68.4 4.9 0.00017 42.8 5.3 37 302-338 101-137 (304)
321 3dzd_A Transcriptional regulat 68.4 5.2 0.00018 43.7 5.6 20 302-321 151-170 (368)
322 2cdn_A Adenylate kinase; phosp 68.3 3.1 0.0001 40.8 3.4 24 300-323 17-40 (201)
323 3sr0_A Adenylate kinase; phosp 68.3 2.6 8.9E-05 42.3 2.9 23 304-326 1-23 (206)
324 2v3c_C SRP54, signal recogniti 68.3 3.2 0.00011 46.6 4.0 36 303-338 99-134 (432)
325 2ewv_A Twitching motility prot 68.3 3.9 0.00013 44.9 4.6 19 302-320 135-153 (372)
326 2rhm_A Putative kinase; P-loop 68.2 2.1 7.1E-05 41.3 2.1 21 302-322 4-24 (193)
327 1qde_A EIF4A, translation init 68.2 3.6 0.00012 40.8 4.0 77 491-572 81-165 (224)
328 2pez_A Bifunctional 3'-phospho 68.1 4.8 0.00017 38.5 4.8 20 302-321 4-23 (179)
329 3dkp_A Probable ATP-dependent 67.8 3.9 0.00013 41.3 4.2 79 491-572 97-185 (245)
330 2xgj_A ATP-dependent RNA helic 67.8 10 0.00036 47.1 8.8 85 330-417 342-461 (1010)
331 1kgd_A CASK, peripheral plasma 67.7 3.1 0.0001 40.3 3.2 18 303-320 5-22 (180)
332 1zp6_A Hypothetical protein AT 67.6 2.2 7.6E-05 41.2 2.2 20 301-320 7-26 (191)
333 2c9o_A RUVB-like 1; hexameric 67.4 5.4 0.00019 44.8 5.7 21 302-322 62-82 (456)
334 3u4q_B ATP-dependent helicase/ 67.4 3.6 0.00012 51.9 4.7 62 306-368 4-70 (1166)
335 3nbx_X ATPase RAVA; AAA+ ATPas 67.3 3.1 0.0001 47.7 3.6 18 303-320 41-58 (500)
336 3exa_A TRNA delta(2)-isopenten 67.3 2.6 9E-05 45.4 2.9 21 304-324 4-24 (322)
337 3fb4_A Adenylate kinase; psych 66.9 2.9 9.9E-05 41.4 2.9 20 304-323 1-20 (216)
338 3crm_A TRNA delta(2)-isopenten 66.8 2.6 8.9E-05 45.5 2.7 20 304-323 6-25 (323)
339 1q57_A DNA primase/helicase; d 66.6 3.6 0.00012 46.8 4.0 60 289-352 231-291 (503)
340 3b9p_A CG5977-PA, isoform A; A 66.5 3.3 0.00011 43.2 3.4 19 303-321 54-72 (297)
341 1ly1_A Polynucleotide kinase; 66.5 2.8 9.7E-05 39.7 2.7 19 304-322 3-21 (181)
342 3dl0_A Adenylate kinase; phosp 66.4 3 0.0001 41.3 2.9 20 304-323 1-20 (216)
343 4eun_A Thermoresistant glucoki 66.3 2.7 9.2E-05 41.3 2.5 21 301-321 27-47 (200)
344 1nn5_A Similar to deoxythymidy 66.1 6.1 0.00021 38.6 5.2 23 302-324 8-30 (215)
345 3cm0_A Adenylate kinase; ATP-b 66.0 2.6 8.9E-05 40.5 2.3 21 303-323 4-24 (186)
346 3uie_A Adenylyl-sulfate kinase 66.0 5.7 0.00019 38.9 4.9 22 301-322 23-44 (200)
347 2pt5_A Shikimate kinase, SK; a 65.9 2.6 8.8E-05 39.8 2.2 20 304-323 1-20 (168)
348 1xjc_A MOBB protein homolog; s 65.8 5.7 0.0002 38.7 4.7 34 305-338 6-39 (169)
349 2j41_A Guanylate kinase; GMP, 65.7 3.6 0.00012 40.0 3.4 19 302-320 5-23 (207)
350 2qor_A Guanylate kinase; phosp 65.7 3.6 0.00012 40.5 3.4 20 302-321 11-30 (204)
351 1zak_A Adenylate kinase; ATP:A 65.6 3.4 0.00012 41.2 3.2 23 302-324 4-26 (222)
352 1lv7_A FTSH; alpha/beta domain 65.3 3.6 0.00012 42.0 3.4 19 303-321 45-63 (257)
353 3pxi_A Negative regulator of g 65.2 4.5 0.00015 48.5 4.7 37 286-323 185-221 (758)
354 3iij_A Coilin-interacting nucl 65.1 3.7 0.00013 39.3 3.3 21 303-323 11-31 (180)
355 1kag_A SKI, shikimate kinase I 65.0 3.6 0.00012 38.9 3.1 19 303-321 4-22 (173)
356 3b9q_A Chloroplast SRP recepto 64.6 5.6 0.00019 42.3 4.8 37 302-338 99-135 (302)
357 1m7g_A Adenylylsulfate kinase; 64.6 4.6 0.00016 39.9 4.0 22 301-322 23-44 (211)
358 2pbr_A DTMP kinase, thymidylat 64.6 6.3 0.00022 37.7 4.9 33 304-336 1-33 (195)
359 3jvv_A Twitching mobility prot 64.5 5.2 0.00018 43.7 4.6 18 303-320 123-140 (356)
360 3kb2_A SPBC2 prophage-derived 64.4 3.6 0.00012 38.7 2.9 18 305-322 3-20 (173)
361 3l9o_A ATP-dependent RNA helic 64.4 8 0.00027 48.6 6.9 81 330-411 440-554 (1108)
362 4b4t_I 26S protease regulatory 64.3 7.2 0.00025 43.7 5.8 21 301-321 214-234 (437)
363 2v54_A DTMP kinase, thymidylat 64.3 3.1 0.00011 40.5 2.5 21 302-322 3-23 (204)
364 1rz3_A Hypothetical protein rb 64.0 11 0.00037 37.0 6.6 36 302-337 21-56 (201)
365 1tev_A UMP-CMP kinase; ploop, 63.8 3.4 0.00012 39.6 2.7 20 303-322 3-22 (196)
366 2vli_A Antibiotic resistance p 63.5 2.6 8.8E-05 40.3 1.7 20 303-322 5-24 (183)
367 1tue_A Replication protein E1; 63.4 6.2 0.00021 39.9 4.5 32 287-321 45-76 (212)
368 2c95_A Adenylate kinase 1; tra 63.4 4 0.00014 39.3 3.2 21 303-323 9-29 (196)
369 3c8u_A Fructokinase; YP_612366 63.3 11 0.00039 37.0 6.5 20 301-320 20-39 (208)
370 4a4z_A Antiviral helicase SKI2 63.2 15 0.00051 45.6 8.9 82 331-415 336-452 (997)
371 2z0h_A DTMP kinase, thymidylat 63.1 7.3 0.00025 37.5 5.0 32 305-336 2-33 (197)
372 3d3q_A TRNA delta(2)-isopenten 63.1 3.5 0.00012 44.9 2.8 19 305-323 9-27 (340)
373 1lvg_A Guanylate kinase, GMP k 63.0 3.1 0.00011 41.1 2.3 18 303-320 4-21 (198)
374 3t61_A Gluconokinase; PSI-biol 62.4 4.7 0.00016 39.4 3.5 20 303-322 18-37 (202)
375 3tr0_A Guanylate kinase, GMP k 62.4 4.6 0.00016 39.3 3.4 18 303-320 7-24 (205)
376 1knq_A Gluconate kinase; ALFA/ 62.4 3.4 0.00011 39.4 2.3 19 303-321 8-26 (175)
377 3tlx_A Adenylate kinase 2; str 62.3 3.9 0.00013 41.8 3.0 24 301-324 27-50 (243)
378 3p32_A Probable GTPase RV1496/ 62.0 14 0.00047 40.0 7.4 37 302-338 78-114 (355)
379 1ak2_A Adenylate kinase isoenz 61.8 4.6 0.00016 40.7 3.4 23 302-324 15-37 (233)
380 1e4v_A Adenylate kinase; trans 61.8 3.9 0.00013 40.5 2.8 21 304-324 1-21 (214)
381 2wwf_A Thymidilate kinase, put 61.8 7.7 0.00026 37.8 5.0 22 302-323 9-30 (212)
382 1g41_A Heat shock protein HSLU 61.8 5.6 0.00019 44.8 4.3 20 302-321 49-68 (444)
383 1nlf_A Regulatory protein REPA 61.8 6.6 0.00023 40.7 4.7 25 302-326 29-53 (279)
384 2iyv_A Shikimate kinase, SK; t 61.3 4.6 0.00016 38.8 3.1 20 304-323 3-22 (184)
385 1g8p_A Magnesium-chelatase 38 61.1 4.1 0.00014 43.3 3.0 19 303-321 45-63 (350)
386 2plr_A DTMP kinase, probable t 61.0 6.7 0.00023 38.2 4.3 21 303-323 4-24 (213)
387 3be4_A Adenylate kinase; malar 60.9 3.9 0.00013 40.7 2.6 23 302-324 4-26 (217)
388 1ukz_A Uridylate kinase; trans 60.7 3.6 0.00012 40.2 2.3 19 303-321 15-33 (203)
389 1in4_A RUVB, holliday junction 60.3 6.3 0.00022 42.2 4.3 19 303-321 51-69 (334)
390 2og2_A Putative signal recogni 60.2 7.2 0.00025 42.6 4.8 37 302-338 156-192 (359)
391 2r62_A Cell division protease 60.2 3 0.0001 42.7 1.7 20 302-321 43-62 (268)
392 3cio_A ETK, tyrosine-protein k 59.8 16 0.00056 38.4 7.4 35 303-337 104-139 (299)
393 2bwj_A Adenylate kinase 5; pho 59.4 4.8 0.00016 38.9 2.9 21 303-323 12-32 (199)
394 1c9k_A COBU, adenosylcobinamid 59.4 3.6 0.00012 40.6 1.9 33 306-342 2-34 (180)
395 1ixz_A ATP-dependent metallopr 59.1 7.7 0.00026 39.4 4.5 18 303-320 49-66 (254)
396 2jaq_A Deoxyguanosine kinase; 59.0 5 0.00017 38.8 2.9 20 304-323 1-20 (205)
397 1w36_B RECB, exodeoxyribonucle 58.7 14 0.00047 46.8 7.5 54 304-357 17-82 (1180)
398 3kjh_A CO dehydrogenase/acetyl 58.6 6.1 0.00021 39.5 3.6 33 305-337 2-34 (254)
399 1cke_A CK, MSSA, protein (cyti 58.5 4.2 0.00014 40.4 2.3 20 303-322 5-24 (227)
400 3cmu_A Protein RECA, recombina 58.0 7.1 0.00024 51.7 4.9 47 301-348 1079-1125(2050)
401 3eph_A TRNA isopentenyltransfe 57.6 4.7 0.00016 44.9 2.7 20 305-324 4-23 (409)
402 1nkt_A Preprotein translocase 57.5 16 0.00056 44.4 7.5 59 329-394 458-516 (922)
403 3cmw_A Protein RECA, recombina 57.4 7.5 0.00026 50.8 4.9 39 301-339 32-70 (1706)
404 1qf9_A UMP/CMP kinase, protein 57.4 5 0.00017 38.4 2.6 21 303-323 6-26 (194)
405 1via_A Shikimate kinase; struc 57.3 5.6 0.00019 37.9 2.9 20 305-324 6-25 (175)
406 1uf9_A TT1252 protein; P-loop, 57.0 5.5 0.00019 38.6 2.9 21 302-322 7-27 (203)
407 3ney_A 55 kDa erythrocyte memb 56.6 6.2 0.00021 39.4 3.2 20 302-321 18-37 (197)
408 1e6c_A Shikimate kinase; phosp 56.4 6 0.00021 37.3 2.9 20 304-323 3-22 (173)
409 3o8b_A HCV NS3 protease/helica 56.2 15 0.0005 43.5 6.8 67 330-410 395-461 (666)
410 3bfv_A CAPA1, CAPB2, membrane 56.2 21 0.00071 37.0 7.3 34 304-337 83-117 (271)
411 4gp7_A Metallophosphoesterase; 56.2 4 0.00014 39.1 1.7 19 303-321 9-27 (171)
412 2x8a_A Nuclear valosin-contain 56.1 9.1 0.00031 39.9 4.5 18 303-320 44-61 (274)
413 1q0u_A Bstdead; DEAD protein, 55.9 3.5 0.00012 40.9 1.2 77 492-572 72-160 (219)
414 1ex7_A Guanylate kinase; subst 55.9 4.9 0.00017 39.7 2.3 16 305-320 3-18 (186)
415 2gza_A Type IV secretion syste 55.6 5.9 0.0002 43.2 3.1 19 302-320 174-192 (361)
416 3a00_A Guanylate kinase, GMP k 55.6 6.5 0.00022 38.1 3.1 16 305-320 3-18 (186)
417 2w00_A HSDR, R.ECOR124I; ATP-b 55.4 28 0.00096 43.4 9.4 82 331-413 537-675 (1038)
418 3b85_A Phosphate starvation-in 55.3 12 0.00041 37.4 5.1 31 283-320 9-39 (208)
419 2v9p_A Replication protein E1; 55.1 8.4 0.00029 41.1 4.1 46 288-339 114-159 (305)
420 2yhs_A FTSY, cell division pro 55.0 9.9 0.00034 43.4 4.9 36 302-337 292-327 (503)
421 1zuh_A Shikimate kinase; alpha 54.9 6.5 0.00022 37.1 2.9 21 304-324 8-28 (168)
422 2xb4_A Adenylate kinase; ATP-b 54.7 6.3 0.00022 39.5 2.9 20 304-323 1-20 (223)
423 1byi_A Dethiobiotin synthase; 54.7 12 0.0004 37.0 4.9 33 307-339 6-38 (224)
424 2woo_A ATPase GET3; tail-ancho 54.3 10 0.00036 40.5 4.7 35 304-338 20-54 (329)
425 1nij_A Hypothetical protein YJ 54.2 8.9 0.0003 40.9 4.1 34 305-340 6-39 (318)
426 2bdt_A BH3686; alpha-beta prot 54.0 5.3 0.00018 38.6 2.1 17 305-321 4-20 (189)
427 4akg_A Glutathione S-transfera 54.0 17 0.00057 49.8 7.5 61 277-340 900-963 (2695)
428 3zq6_A Putative arsenical pump 54.0 10 0.00035 40.4 4.6 34 305-338 16-49 (324)
429 1iy2_A ATP-dependent metallopr 53.8 10 0.00036 39.1 4.5 17 304-320 74-90 (278)
430 2if2_A Dephospho-COA kinase; a 53.8 5.3 0.00018 39.0 2.1 17 305-321 3-19 (204)
431 1odf_A YGR205W, hypothetical 3 53.7 11 0.00037 39.8 4.7 20 301-320 29-48 (290)
432 3umf_A Adenylate kinase; rossm 53.6 6.7 0.00023 39.7 2.9 24 302-325 28-51 (217)
433 2qt1_A Nicotinamide riboside k 53.3 6.9 0.00023 38.4 2.9 18 303-320 21-38 (207)
434 3asz_A Uridine kinase; cytidin 53.2 5.3 0.00018 39.2 2.0 19 302-320 5-23 (211)
435 1f2t_A RAD50 ABC-ATPase; DNA d 53.1 7.5 0.00026 36.6 3.0 15 305-319 25-39 (149)
436 1gtv_A TMK, thymidylate kinase 53.1 5.3 0.00018 39.1 2.0 18 305-322 2-19 (214)
437 2pt7_A CAG-ALFA; ATPase, prote 52.9 5.5 0.00019 42.9 2.3 17 303-319 171-187 (330)
438 1np6_A Molybdopterin-guanine d 52.8 13 0.00044 36.1 4.7 16 305-320 8-23 (174)
439 1ye8_A Protein THEP1, hypothet 52.6 7.4 0.00025 37.8 2.9 17 304-320 1-17 (178)
440 1tf5_A Preprotein translocase 52.3 26 0.00088 42.5 8.0 80 329-416 430-517 (844)
441 4edh_A DTMP kinase, thymidylat 51.9 13 0.00045 37.2 4.8 38 303-340 6-44 (213)
442 1vht_A Dephospho-COA kinase; s 51.6 6.3 0.00022 39.0 2.3 19 303-321 4-22 (218)
443 1z6g_A Guanylate kinase; struc 51.4 8.5 0.00029 38.5 3.3 19 302-320 22-40 (218)
444 2vhj_A Ntpase P4, P4; non- hyd 51.3 3.1 0.0001 45.0 -0.1 24 303-326 123-146 (331)
445 3la6_A Tyrosine-protein kinase 51.3 27 0.00094 36.5 7.3 35 303-337 92-127 (286)
446 3vkg_A Dynein heavy chain, cyt 51.0 19 0.00065 49.9 7.3 41 277-320 883-923 (3245)
447 1ihu_A Arsenical pump-driving 50.9 13 0.00046 42.9 5.3 36 303-338 8-43 (589)
448 3bs4_A Uncharacterized protein 50.9 12 0.00042 38.9 4.4 52 301-353 19-70 (260)
449 1tf7_A KAIC; homohexamer, hexa 50.8 11 0.00038 43.0 4.5 39 302-340 280-318 (525)
450 1yrb_A ATP(GTP)binding protein 50.5 12 0.00042 37.8 4.4 35 303-338 14-48 (262)
451 2bbw_A Adenylate kinase 4, AK4 50.5 8.8 0.0003 38.9 3.2 19 303-321 27-45 (246)
452 1pzn_A RAD51, DNA repair and r 50.4 9.3 0.00032 41.4 3.6 48 289-338 119-172 (349)
453 4eaq_A DTMP kinase, thymidylat 50.1 13 0.00045 37.5 4.5 35 302-337 25-59 (229)
454 1s96_A Guanylate kinase, GMP k 50.0 7.4 0.00025 39.2 2.5 20 301-320 14-33 (219)
455 3ug7_A Arsenical pump-driving 49.9 13 0.00045 40.1 4.7 33 306-338 29-61 (349)
456 3k1j_A LON protease, ATP-depen 49.9 11 0.00039 43.8 4.5 33 286-321 46-78 (604)
457 1u0j_A DNA replication protein 49.4 17 0.00059 38.0 5.3 19 303-321 104-122 (267)
458 3end_A Light-independent proto 49.3 14 0.00049 38.6 4.8 35 303-337 41-75 (307)
459 1jjv_A Dephospho-COA kinase; P 48.0 7.4 0.00025 38.1 2.1 16 305-320 4-19 (206)
460 3lnc_A Guanylate kinase, GMP k 48.0 6.7 0.00023 39.3 1.9 18 303-320 27-44 (231)
461 1hyq_A MIND, cell division inh 47.9 16 0.00055 37.0 4.8 31 307-337 7-37 (263)
462 1g3q_A MIND ATPase, cell divis 47.6 15 0.00051 36.5 4.4 32 307-338 7-38 (237)
463 2ph1_A Nucleotide-binding prot 47.1 15 0.00051 37.5 4.4 30 308-337 24-53 (262)
464 2ce7_A Cell division protein F 47.0 8.6 0.00029 43.7 2.7 19 303-321 49-67 (476)
465 2f6r_A COA synthase, bifunctio 46.9 7.6 0.00026 40.6 2.1 21 303-323 75-95 (281)
466 1p5z_B DCK, deoxycytidine kina 46.9 7.8 0.00027 39.7 2.2 20 301-320 22-41 (263)
467 1ry6_A Internal kinesin; kines 46.7 9.2 0.00032 41.8 2.8 16 305-320 87-102 (360)
468 3iqw_A Tail-anchored protein t 46.5 16 0.00056 39.2 4.8 35 304-338 17-51 (334)
469 3fmo_B ATP-dependent RNA helic 46.4 16 0.00054 38.5 4.5 74 492-572 162-245 (300)
470 4e22_A Cytidylate kinase; P-lo 46.1 11 0.00039 38.4 3.3 21 302-322 26-46 (252)
471 3b6e_A Interferon-induced heli 45.9 9.7 0.00033 37.0 2.6 79 491-573 81-173 (216)
472 1znw_A Guanylate kinase, GMP k 45.8 12 0.0004 36.8 3.2 18 303-320 20-37 (207)
473 1uj2_A Uridine-cytidine kinase 45.5 8.5 0.00029 39.2 2.2 20 302-321 21-40 (252)
474 3qks_A DNA double-strand break 45.3 11 0.00038 37.2 3.0 16 305-320 25-40 (203)
475 3auy_A DNA double-strand break 45.3 10 0.00034 41.3 2.9 17 304-320 26-42 (371)
476 4dzz_A Plasmid partitioning pr 45.3 15 0.0005 35.5 3.8 30 309-338 8-37 (206)
477 3q9l_A Septum site-determining 45.2 17 0.00057 36.6 4.4 31 307-337 7-37 (260)
478 1ltq_A Polynucleotide kinase; 45.1 8.2 0.00028 40.2 2.0 19 304-322 3-21 (301)
479 1bg2_A Kinesin; motor protein, 45.1 11 0.00038 40.6 3.1 39 281-320 53-95 (325)
480 1sky_E F1-ATPase, F1-ATP synth 44.8 92 0.0031 35.2 10.6 34 288-325 140-173 (473)
481 3tqc_A Pantothenate kinase; bi 44.7 25 0.00087 37.6 5.8 17 304-320 93-109 (321)
482 3of5_A Dethiobiotin synthetase 44.5 22 0.00074 36.0 5.1 34 306-339 7-41 (228)
483 2y65_A Kinesin, kinesin heavy 44.3 11 0.00039 41.2 3.1 39 281-320 60-102 (365)
484 3kta_A Chromosome segregation 44.2 12 0.0004 35.7 2.9 16 305-320 28-43 (182)
485 3r20_A Cytidylate kinase; stru 44.1 12 0.00042 38.2 3.1 21 303-323 9-29 (233)
486 1x88_A Kinesin-like protein KI 44.0 10 0.00034 41.5 2.6 39 281-320 64-106 (359)
487 3v9p_A DTMP kinase, thymidylat 44.0 18 0.00062 36.7 4.4 22 302-323 24-45 (227)
488 3qf7_A RAD50; ABC-ATPase, ATPa 43.9 14 0.00048 40.2 3.7 16 305-320 25-40 (365)
489 2woj_A ATPase GET3; tail-ancho 43.6 20 0.00068 38.9 4.9 35 304-338 19-55 (354)
490 3nwj_A ATSK2; P loop, shikimat 43.3 13 0.00045 38.3 3.2 21 303-323 48-68 (250)
491 3k4h_A Putative transcriptiona 42.8 2.5E+02 0.0085 28.0 13.0 42 474-515 172-214 (292)
492 3b6u_A Kinesin-like protein KI 42.7 12 0.00041 41.1 2.9 39 281-320 77-119 (372)
493 2afh_E Nitrogenase iron protei 42.6 20 0.00069 37.0 4.6 32 306-337 5-36 (289)
494 3dc4_A Kinesin-like protein NO 42.6 11 0.00038 40.9 2.6 39 281-320 70-112 (344)
495 1goj_A Kinesin, kinesin heavy 42.3 12 0.0004 40.9 2.7 39 281-320 56-98 (355)
496 3io3_A DEHA2D07832P; chaperone 42.2 23 0.0008 38.3 5.1 36 303-338 18-55 (348)
497 2wbe_C Bipolar kinesin KRP-130 42.2 12 0.0004 41.2 2.8 39 281-320 76-118 (373)
498 3lv8_A DTMP kinase, thymidylat 42.0 25 0.00085 35.9 5.0 31 303-333 27-57 (236)
499 3bfn_A Kinesin-like protein KI 41.9 12 0.00039 41.5 2.6 39 281-320 74-116 (388)
500 2h92_A Cytidylate kinase; ross 41.7 14 0.00049 36.3 3.1 19 303-321 3-21 (219)
No 1
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.2e-98 Score=942.06 Aligned_cols=698 Identities=33% Similarity=0.590 Sum_probs=606.5
Q ss_pred HHHHHHHHHHhhhhhhcCCcCCCCCCCCCCCCCCCCCCCceeeeeCCCCCCCCCcccccccccEEEeeEEEeecCCCCCc
Q 003268 105 YIQLVKEQQQKGLQKLKGKKSGGGGAGAGAGDSGYNGAGGFSYKVDPYSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVP 184 (835)
Q Consensus 105 ~~~~~~e~~~~g~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~ 184 (835)
-..+++|.+.+|.++.+++|+++...+ .-....+..+|++||||||++||||+|.|++....+ |..
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~Gd~vvH~~hGig~~~gl~~~~~~--g~~ 508 (1151)
T 2eyq_A 443 NLALICESDLLGERVARRRQDSRRTIN------------PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG--GIT 508 (1151)
T ss_dssp TEEEEEHHHHSSCCCCCCCCCGGGBCC------------HHHHHHTCTTCCTTCEEEETTTEEEEEEEEEEEESS--SCE
T ss_pred CEEEEECchhhcccccchhhccccccc------------chhhccchhhCCCCCeEeecccceeEECcEEEEecC--CCC
Confidence 356778999999765332222111000 112224778999999999999999999999953322 678
Q ss_pred cceEEEEEcCCC-cccChhhhhHHhhhccCCCCCCchHHHhhccCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCC
Q 003268 185 IEYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQKRP 263 (835)
Q Consensus 185 ~~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~l~~~r~~~~~~ 263 (835)
+||+.|+|++++ +++|++++ .++++|.+.++. .+++++|+. ..|++.+.++++.+.+++.+++++|+.|....++
T Consensus 509 ~~~~~~~y~~~~~l~vp~~~l-~~~~~y~g~~~~--~~~l~~l~~-~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~g~ 584 (1151)
T 2eyq_A 509 GEYLMLTYANDAKLYVPVSSL-HLISRYAGGAEE--NAPLHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 584 (1151)
T ss_dssp EEEEEEECGGGCEEEEEGGGG-GGEEECCCSCSS--SCCCCCTTC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cceEEEEecCCCceeeeHHHh-hhHhcccCCCCC--CCchhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 999999999986 78999996 679999876543 578999985 8999999999999999999999999999999999
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
++++++ ++..|.+.|+|++||+|.+|++.++++|. ++.+||+|+|||||||||++|+.+++..+..+++++|++||++
T Consensus 585 ~~~~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~-~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~ 663 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC-QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 663 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHH-SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh-cCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHH
Confidence 998887 89999999999999999999999999884 4567899999999999999999999999899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhH
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQK 422 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~ 422 (835)
|+.||+++|.++|..+ ++++..++++.+..++...+..+..|.++|+||||++|.+.+.++++++|||||+|+||+.+.
T Consensus 664 La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~ 742 (1151)
T 2eyq_A 664 LAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 742 (1151)
T ss_dssp HHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHH
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHH
Confidence 9999999999988876 589999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCc
Q 003268 423 EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRI 502 (835)
Q Consensus 423 e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v 502 (835)
+.+..++.+.++|+|||||+|+++.++..++.+.+++..+|..+.++.+++.......+.+.+.+.+.++++++||||++
T Consensus 743 ~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v 822 (1151)
T 2eyq_A 743 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 822 (1151)
T ss_dssp HHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCS
T ss_pred HHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 99999989999999999999999999999999999999999899999999888888888899999999999999999999
Q ss_pred cChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHH
Q 003268 503 KGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQL 582 (835)
Q Consensus 503 ~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr 582 (835)
++++.+++.|++.+|++++.++||+|++.+|++++++|.+|+++|||||+++++|||+|++++||+++++.|++++|+||
T Consensus 823 ~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr 902 (1151)
T 2eyq_A 823 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 902 (1151)
T ss_dssp SCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hcccCCCCCceEEEEEecCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHH
Q 003268 583 RGRVGRADKEAHAYLFYPDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEML 662 (835)
Q Consensus 583 ~GRaGR~g~~G~ay~l~~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L 662 (835)
+||+||.|+.|+||+++++++..+..+.+|+..++..+++|+||.++++|++|||+|+++|.+|+|++..+||++|.++|
T Consensus 903 ~GRvgR~g~~g~~~ll~~~~~~l~~~~~~rl~~i~~~~~lg~gf~ia~~dl~irg~g~~lg~~q~g~i~~~~~~~~~~~l 982 (1151)
T 2eyq_A 903 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 982 (1151)
T ss_dssp HTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHHTTCCSBSHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHH
T ss_pred HhccCcCCCceEEEEEECCccccCHHHHHHHHHHHHhhccCCcchHHHHHhccCCCcccCCccccCChhhccHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccccc-cc--CcceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHH
Q 003268 663 FESLSKVDEHCVIS-VP--YKSVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSM 739 (835)
Q Consensus 663 ~~ai~~l~~~~~~~-~~--~g~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~ 739 (835)
.+++..++++.... .. ...+.+++++++++|+.||++...|+++|++++.+. +.+++.++..||.||||++|.++
T Consensus 983 ~~a~~~~~~~~~~~~~~~~~~~~~i~l~~~~~ip~~yi~~~~~rl~~y~~l~~~~--~~~~~~~~~~el~drfg~~p~~~ 1060 (1151)
T 2eyq_A 983 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK--TENELEEIKVELIDRFGLLPDPA 1060 (1151)
T ss_dssp HHHHHHHHHTCCSCCGGGSCCCCCEECSSCCSCCTTTSCCHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHHHHcCCCCCcccccccCeeEecCCcCcCChhhcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCCcHHH
Confidence 99999887432211 11 125689999999999999999999999999999976 45789999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCccEEEecCcEEEEEecCCHH-HHHHHHHhhcccccccceeeeCCeeEEEEEecCC-cHHHHHH
Q 003268 740 EILLKKLYVRRMAADIGITKIYASGKMVGMKTNMNKK-VFKMMIDSMTSEVHRNSLTFEGDQIKAELLLELP-REQLLNW 817 (835)
Q Consensus 740 ~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 817 (835)
++||.+++||++|+++||.+|...++.+.+.+..... -...+...+...+ ..+++.++. .+.+....+ ..+.+++
T Consensus 1061 ~~l~~~~~~k~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 1137 (1151)
T 2eyq_A 1061 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP--QHYRLDGPT-RLKFIQDLSERKTRIEW 1137 (1151)
T ss_dssp HHHHHHHHHHHHHHHHCCSCEEECSSEEEEECCSSCCCCHHHHHHHHHHCG--GGEEEETTT-EEEEECCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcEEEecCCeEEEEEecCCCCCHHHHHHHHHhcC--CcEEECCCc-eEEEEecCCCHHHHHHH
Confidence 9999999999999999999999999997777642211 0111222332222 234444222 233333222 3455899
Q ss_pred HHHHHHHHHh
Q 003268 818 IFQCLAELYA 827 (835)
Q Consensus 818 ~~~~~~~~~~ 827 (835)
+..++..+..
T Consensus 1138 ~~~~~~~~~~ 1147 (1151)
T 2eyq_A 1138 VRQFMRELEE 1147 (1151)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 2
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-57 Score=549.72 Aligned_cols=430 Identities=36% Similarity=0.581 Sum_probs=354.6
Q ss_pred hHHHhhccCCchHHHHH-HHHHHhHHHHHHHHHHH---HHHHHhcCCCCCCCC-hHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003268 220 PRTLSKLSDTTAWERRK-TKGKVAIQKMVVDLMEL---YLHRLKQKRPPYPKN-PAIAEFAAQFPYEPTPDQKKAFLDVE 294 (835)
Q Consensus 220 ~~~l~~l~~~~~w~~~~-~~~~~~~~~~~~~l~~l---~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~tp~Q~~AI~~Il 294 (835)
..+|..+|.+......+ .+.+...+|+..-.+.+ +..+....+.+++.+ ++.+.|.+.++|+|||+|.+|++.++
T Consensus 302 ~~al~~iH~P~~~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~lpf~lt~~Q~~ai~~I~ 381 (780)
T 1gm5_A 302 KDAYYGMHFPKTFYHLEKARERLAYEELFVLQLAFQKIRKEREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIR 381 (780)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCTHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 45677777765444332 34455666665444443 334344556666655 48899999999999999999999999
Q ss_pred HhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHH
Q 003268 295 RDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAE 374 (835)
Q Consensus 295 ~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e 374 (835)
+++. ++.+|++|++||||||||++|+.+++..+..|.+++|++||++||.|+++++.+.+... +++|+.++|+.+..+
T Consensus 382 ~~l~-~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~ 459 (780)
T 1gm5_A 382 NDMI-SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF-NIHVALLIGATTPSE 459 (780)
T ss_dssp HHHH-SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHH
T ss_pred hhcc-ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHH
Confidence 9884 56678999999999999999999999998889999999999999999999999877665 699999999999999
Q ss_pred HHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCC
Q 003268 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSATPIPRTLYLALTGFR 454 (835)
Q Consensus 375 ~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~ 454 (835)
+...+..+.+|.++|+||||+++.+.+.+.++++|||||+|+||+.++..+.....+.++++|||||+|+++.+...+..
T Consensus 460 r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~ 539 (780)
T 1gm5_A 460 KEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDL 539 (780)
T ss_dssp HHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCS
T ss_pred HHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCc
Confidence 88899999999999999999999988899999999999999999988766666667889999999999999998888877
Q ss_pred CcceeeCCCCCccceeEEeccc-CHHHHHHHHHHHHhcCCeEEEEecCccC--------hHHHHHHHHh-hCCCCcEEEE
Q 003268 455 DASLISTPPPERLPIKTHLSAF-SKEKVISAIKYELDRGGQVFYVLPRIKG--------LEEPMDFLQQ-AFPGVDIAIA 524 (835)
Q Consensus 455 d~s~i~~~p~~r~~V~~~~~~~-~~~~~~~~i~~~l~~ggqvlVf~~~v~~--------ie~l~~~L~~-~~p~~~V~~l 524 (835)
+.+++...|..+.++.+.+... ....+.+.+.+.+..+++++||||++++ ++.+++.|.+ .+|++.+..+
T Consensus 540 ~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~l 619 (780)
T 1gm5_A 540 DVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLM 619 (780)
T ss_dssp SCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCC
T ss_pred ceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEE
Confidence 8888877777788887766543 3456778888888899999999998754 6778888888 7789999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 525 HG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||+|++.+|+.+++.|++|+++|||||+++++|||+|++++||++++++|++++|+||+||+||.|+.|+||+++++.
T Consensus 620 HG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~-- 697 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDV-- 697 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSC--
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCC--
Confidence 999999999999999999999999999999999999999999999999989999999999999999999999998733
Q ss_pred CCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHH
Q 003268 605 LSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDL 657 (835)
Q Consensus 605 ~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~ 657 (835)
+..+.+|+..+.... +||.+++.|+++||.|+++|..|+|.+.-...++
T Consensus 698 -~~~~~~rl~~l~~~~---dgf~iae~dL~~Rg~gd~lG~~qsg~~~~~~~~l 746 (780)
T 1gm5_A 698 -GEEAMERLRFFTLNT---DGFKIAEYDLKTRGPGEFFGVKQHGLSGFKVADL 746 (780)
T ss_dssp -CHHHHHHHHHHHTCC---CSHHHHHHHHHSSCCCC----CCCSSCCSCCHHH
T ss_pred -ChHHHHHHHHHHhhh---ccchhhHhhHhccCcchhhhhhhcCCCccceehh
Confidence 577888888876543 5999999999999999999999999865333333
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3e-44 Score=408.88 Aligned_cols=323 Identities=22% Similarity=0.293 Sum_probs=257.6
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--------CCEEEE
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--------GKQAMV 336 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--------g~qvlV 336 (835)
+.++ +.+.+.+.++..|||+|.+||+.++. ++|++++++||||||++|++|++..+.. +.+++|
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~-------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISS-------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 3445 77788877777899999999999864 4799999999999999999999876532 568999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEe
Q 003268 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVII 411 (835)
++||++||.|++++++. +....++++..++|+.+...+.. .+..+ ++|+|+||++|.+ .+.+.++++||+
T Consensus 135 l~PtreLa~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~---~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 135 VSPTRELAIQIFNEARK-FAFESYLKIGIVYGGTSFRHQNE---CITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp ECSSHHHHHHHHHHHHH-HTTTSSCCCCEECTTSCHHHHHH---HHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred EecCHHHHHHHHHHHHH-HhccCCcEEEEEECCCCHHHHHH---HhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 99999999999999987 55555788999999887765433 33444 8999999998864 345788999999
Q ss_pred ccccccc---h-hhHHHHHh---hcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEecccCHHHHH
Q 003268 412 DEEQRFG---V-KQKEKIAS---FKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSAFSKEKVI 482 (835)
Q Consensus 412 DEaHr~g---~-~~~e~l~~---~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~~~~~~~~~ 482 (835)
||||++. + .+...+.. ...+.+++++|||+++....++...+.++..+...... ...+...+.........
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH
Confidence 9999963 2 22333332 25678999999999888777777777766655443221 22344333333322233
Q ss_pred HHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC
Q 003268 483 SAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 483 ~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp 561 (835)
..+.+.+. .+.+++|||++++.++.+++.|... ++.+..+||++++.+|+.+++.|++|+.+|||||+++++|||+|
T Consensus 290 ~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~ 367 (434)
T 2db3_A 290 SKLIEILSEQADGTIVFVETKRGADFLASFLSEK--EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIK 367 (434)
T ss_dssp HHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHT--TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCT
T ss_pred HHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcc
Confidence 33333332 3456999999999999999999988 88999999999999999999999999999999999999999999
Q ss_pred CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++++||++|.|. +..+|+||+||+||.|+.|.|++|+++++
T Consensus 368 ~v~~VI~~d~p~-~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 368 NIKHVINYDMPS-KIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp TCCEEEESSCCS-SHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred cCCEEEEECCCC-CHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 999999999996 99999999999999999999999998653
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.5e-43 Score=391.10 Aligned_cols=324 Identities=22% Similarity=0.266 Sum_probs=250.3
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--------------
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-------------- 330 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-------------- 330 (835)
+.++ +.+.+...+...|||+|.+|++.++. ++|+++++|||||||++|++|++..+..
T Consensus 21 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYTRPTPVQKHAIPIIKE-------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc-------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 4455 77888888888999999999998864 4789999999999999999998866431
Q ss_pred -------CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc----
Q 003268 331 -------GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS---- 399 (835)
Q Consensus 331 -------g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~---- 399 (835)
+.+++|++||++|+.|++++++. +....++++..++|+.+..+.. ..+.. .++|+|+||+.|.+
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARK-FSYRSRVRPCVVYGGADIGQQI---RDLER-GCHLLVATPGRLVDMMER 168 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHH-HHTTSSCCEEEECSSSCHHHHH---HHHTT-CCSEEEECHHHHHHHHHT
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHH-HhCcCCceEEEEECCCCHHHHH---HHhhC-CCCEEEEChHHHHHHHHc
Confidence 25799999999999999999987 4444478999999987765533 33444 48999999998864
Q ss_pred -ccccccccEEEeccccccch----hhHHHHHhh---c--CCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC--Ccc
Q 003268 400 -RVVYNNLGLLVVDEEQRFGV----KQKEKIASF---K--ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERL 467 (835)
Q Consensus 400 -~l~~~~l~lVIIDEaHr~g~----~~~e~l~~~---~--~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~--~r~ 467 (835)
.+.+.++++|||||+|++.. .....+... . ...+++++|||+++.........+.++..+..... ...
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 34578899999999999632 222333321 1 25789999999977666555555555544433221 112
Q ss_pred ceeEEecccCHHHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCC
Q 003268 468 PIKTHLSAFSKEKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA 544 (835)
Q Consensus 468 ~V~~~~~~~~~~~~~~~i~~~l---~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~ 544 (835)
.+...+...........+...+ ..+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC--CCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 2333222222222233333333 45689999999999999999999987 889999999999999999999999999
Q ss_pred eeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 545 IKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 545 ~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+|||||+++++|+|+|++++||+++.|. +..+|+||+||+||.|+.|.|++|+++.+.
T Consensus 327 ~~vlvaT~~~~~Gidip~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVKHVINFDLPS-DIEEYVHRIGRTGRVGNLGLATSFFNERNI 385 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEEEEEESSCCS-SHHHHHHHHTTBCC--CCEEEEEEECGGGG
T ss_pred CCEEEECChhhcCCCcccCCEEEEEcCCC-CHHHHHHhcCccccCCCCceEEEEEccccH
Confidence 99999999999999999999999999995 999999999999999999999999987754
No 5
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-45 Score=427.20 Aligned_cols=387 Identities=12% Similarity=0.123 Sum_probs=282.9
Q ss_pred EEEEEcCCC-cc--cChhhhhHHhhhccCCCCCCchHH---HhhccCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Q 003268 188 VFIEYADGM-AK--LPVKQASRMLYRYNLPNETKRPRT---LSKLSDTTAWERRKTKGKVAIQKMVVDLMELYLHRLKQK 261 (835)
Q Consensus 188 ~~~~y~~~~-~~--~~~~~~~~~~~~y~~~~~~~~~~~---l~~l~~~~~w~~~~~~~~~~~~~~~~~l~~l~~~r~~~~ 261 (835)
+.|+|++++ .+ +|+++. ..+++|.+.. .|. +.+++. +.|.+.+...+. ...++..+++.++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~----~p~~~f~~~~~~-~~w~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 75 (510)
T 2oca_A 3 IKVHFHDFSHVRIDCEESTF-HELRDFFSFE----ADGYRFNPRFRY-GNWDGRIRLLDY-NRLLPFGLVGQIKKFCDNF 75 (510)
T ss_dssp EEEEECCSSEEEEECCHHHH-HHHHHHTEEE----CTTGGGCHHHHT-SSCCSEEESCCT-TCEEEGGGGGGHHHHHHHH
T ss_pred eeEEEecceeEEEecChhHH-HHHHHHhCEe----cCCcccChhccc-CccCceEeeccc-CCccccCcHHHHHHHHHHc
Confidence 678899886 56 899886 5689997543 244 777774 779875443332 2244455566666665555
Q ss_pred CCCCCCCh-HH-------HHHHH-----hC-----CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 262 RPPYPKNP-AI-------AEFAA-----QF-----PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 262 ~~~~~~~~-~~-------~~~~~-----~~-----~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
+.++..++ +. ..|.+ .| +++|||+|.+|++.++++ +++|+++|||||||++|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~f~~w~~~~~f~~~~~~~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~ 148 (510)
T 2oca_A 76 GYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALL 148 (510)
T ss_dssp TCCEEECGGGSCCCSCCHHHHHHHHHTCCEEETTEEECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHH
T ss_pred CCeEEEccCCCCCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHH
Confidence 54332221 11 34443 44 669999999999998862 68999999999999999999
Q ss_pred HHHHHhCCC-EEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc--
Q 003268 324 IFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-- 400 (835)
Q Consensus 324 ~~~~~~~g~-qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-- 400 (835)
+...+..++ +++||+||++|+.|++++|.. +..++++.+..++++.+..++ ..+..+|+|+||+.|...
T Consensus 149 ~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~ 220 (510)
T 2oca_A 149 ARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPK 220 (510)
T ss_dssp HHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCG
T ss_pred HHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchh
Confidence 988776555 999999999999999999975 777767889999998765542 235699999999999865
Q ss_pred cccccccEEEeccccccchhhHHHH-HhhcCCceEEEeecCCChhhH-HHHHhcCCCcceeeCCCCCc-----------c
Q 003268 401 VVYNNLGLLVVDEEQRFGVKQKEKI-ASFKISVDVLTLSATPIPRTL-YLALTGFRDASLISTPPPER-----------L 467 (835)
Q Consensus 401 l~~~~l~lVIIDEaHr~g~~~~e~l-~~~~~~~~vL~lSATp~p~tl-~~~~~~~~d~s~i~~~p~~r-----------~ 467 (835)
..+.++++|||||+|+++......+ ..+....++|+|||||+.... .+...++.+...+..++... .
T Consensus 221 ~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 300 (510)
T 2oca_A 221 EWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKIN 300 (510)
T ss_dssp GGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEE
T ss_pred hhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEE
Confidence 5678999999999999988766665 455577899999999954431 22333333444443333211 0
Q ss_pred ceeEEe----------cccC------------HHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEc
Q 003268 468 PIKTHL----------SAFS------------KEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAH 525 (835)
Q Consensus 468 ~V~~~~----------~~~~------------~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lH 525 (835)
++.... ..+. ...+.+.+.+...++++.++++++++.++.+++.|.+. +.++..+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~--~~~v~~~~ 378 (510)
T 2oca_A 301 SIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNE--YDKVYYVS 378 (510)
T ss_dssp EEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTT--CSSEEEES
T ss_pred EEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHc--CCCeEEEE
Confidence 000000 0000 11233444555555677766666688999999999987 44899999
Q ss_pred CCCCHHHHHHHHHHhhcCCeeEEEEC-CcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEe
Q 003268 526 GQQYSRQLEETMEKFAQGAIKILICT-NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY 599 (835)
Q Consensus 526 G~m~~~ere~vl~~F~~g~~~VLVaT-~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~ 599 (835)
|+|+..+|+++++.|.+|+.+||||| +++++|+|+|++++||+++++ +++.+|+|++||+||.|..+.+++++
T Consensus 379 g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~-~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 379 GEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGV-KSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp SSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCC-CSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCC-CCHHHHHHHHhcccccCCCCceEEEE
Confidence 99999999999999999999999999 999999999999999999999 59999999999999998766443333
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8e-42 Score=379.55 Aligned_cols=325 Identities=18% Similarity=0.154 Sum_probs=257.6
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPt 340 (835)
++.++ +.+.+.+.+...|+|+|.+|++.++. ++++++++|||+|||++|+.+++..+.. +.+++|++||
T Consensus 13 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 85 (391)
T 1xti_A 13 FLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 85 (391)
T ss_dssp GCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTT-------TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCC
Confidence 44555 77888777766899999999998864 4789999999999999999999877543 5689999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++|+.|+++.+.......+++++..++|+.+..... ..+..+.++|+|+||+.|.. ...+.++++||+||+|
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999998755555689999999987765543 33455678999999998853 3457889999999999
Q ss_pred ccch--hh----HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc---cceeEEecccCHHHHHHHHH
Q 003268 416 RFGV--KQ----KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER---LPIKTHLSAFSKEKVISAIK 486 (835)
Q Consensus 416 r~g~--~~----~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r---~~V~~~~~~~~~~~~~~~i~ 486 (835)
++.. .. ...+.......+++++|||+++.........+.++..+....... ..+..++...........+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 8743 11 122333456889999999998876666666666665554433221 22333332222222223333
Q ss_pred HHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC
Q 003268 487 YEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
..+ ..+++++|||++++.++.+++.|... ++.+..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|+++
T Consensus 243 ~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 243 DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHSCCSEEEEECSCHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 322 25689999999999999999999988 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 565 TIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 565 ~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+||+++.|. +..+|.||+||+||.|+.|.|++++++.
T Consensus 321 ~Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 321 IAFNYDMPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp EEEESSCCS-SHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred EEEEeCCCC-CHHHHHHhcccccCCCCceEEEEEEccc
Confidence 999999995 9999999999999999999999999764
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-41 Score=373.95 Aligned_cols=323 Identities=21% Similarity=0.235 Sum_probs=260.7
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccH
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTI 341 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr 341 (835)
++.++ +.+.+.+.+...|+|+|.+|++.++.+ ++++++++|||+|||++|+.+++..+.. +.+++|++|++
T Consensus 11 ~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 11 LNLSDNILNAIRNKGFEKPTDIQMKVIPLFLND------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp SSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHT------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 45555 788888888889999999999998752 3689999999999999999998887654 67999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr 416 (835)
+|+.|+++++...+.. .++.+..++++.........+ . ..+|+|+||+.|.+ ...+.++++||+||+|+
T Consensus 85 ~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---~--~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 85 ELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKAL---K--NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp HHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHH---H--TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhc---C--CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 9999999999985544 368899888887665543333 2 47999999998864 24578899999999998
Q ss_pred cchh-----hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHH-h
Q 003268 417 FGVK-----QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYEL-D 490 (835)
Q Consensus 417 ~g~~-----~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l-~ 490 (835)
+... ....+.....+.+++++||||++.........+.+...+...... .+...............+.+.+ .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~~ 236 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINA--NIEQSYVEVNENERFEALCRLLKN 236 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSS--SSEEEEEECCGGGHHHHHHHHHCS
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCC--CceEEEEEeChHHHHHHHHHHHhc
Confidence 6321 123344456788999999999887776666666666665543322 3333333333333444554444 4
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.+++.|... +..+..+||+++..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI--GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYH 314 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEec
Confidence 5678999999999999999999988 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.|. +..+|.||+||+||.|+.|.|++++++.+.
T Consensus 315 ~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 315 LPQ-NPESYMHRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp CCS-CHHHHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred CCC-CHHHhhhcccccccCCCccEEEEEEcHHHH
Confidence 985 999999999999999999999999987643
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8.3e-42 Score=381.63 Aligned_cols=323 Identities=21% Similarity=0.205 Sum_probs=255.3
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|+|+|.+|++.++.+ .++++++++|||+|||++|+.+++..+.. +.+++|++||+
T Consensus 31 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS-----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-----CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 4455 778888877789999999999998752 35799999999999999999999887654 34899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEecccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDEaH 415 (835)
+|+.|+++.+......++++.+.+..++...... ....++|+|+||+.|.+ .+.+.++++||+||+|
T Consensus 106 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 106 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 9999999999875444567888888886543221 13457999999998854 3456889999999999
Q ss_pred ccch----h-h-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEe-cccCHHHHHHHHH
Q 003268 416 RFGV----K-Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHL-SAFSKEKVISAIK 486 (835)
Q Consensus 416 r~g~----~-~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~-~~~~~~~~~~~i~ 486 (835)
++.. . . ...+..+..+.+++++|||+.+.........+.++..+...... ...+.... ...........+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 258 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHH
Confidence 8632 1 1 22234446788999999999888777777777776665543221 12233332 2223333444444
Q ss_pred HHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC
Q 003268 487 YELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
..+. .+++++|||++++.++.+++.|... +..+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|+++
T Consensus 259 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 259 NLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHHHHSSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEE
T ss_pred HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC--CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCC
Confidence 4433 5689999999999999999999998 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-----CCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 565 TIIVQDVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 565 ~VIi~d~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+||+++.|. .+..+|.||+||+||.|+.|.|++++++.
T Consensus 337 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 337 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp EEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred EEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh
Confidence 999999984 26789999999999999999999999653
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=386.96 Aligned_cols=323 Identities=20% Similarity=0.206 Sum_probs=242.5
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcccH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|+|+|.+|++.++. ++++++++|||||||++|+.+++..+. .+.+++|++||+
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK-------GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC-------CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 3445 66777776677999999999999874 468999999999999999999998765 467899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr 416 (835)
+|+.|+++.+.. +....+..+....++.+... .+..+..+.++|+|+||+.|.+ .+.+.++++||+||+|+
T Consensus 119 ~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 119 ELAQQIQKVVMA-LGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp HHHHHHHHHHHH-HGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred HHHHHHHHHHHH-HhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 999999999987 54444788888888766544 3445555679999999998764 24567899999999998
Q ss_pred cch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCC--ccceeEEecc-cCHHHHHHHHHHH
Q 003268 417 FGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPE--RLPIKTHLSA-FSKEKVISAIKYE 488 (835)
Q Consensus 417 ~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~--r~~V~~~~~~-~~~~~~~~~i~~~ 488 (835)
+.. .....+..+..+.++++||||+++.........+.++..+...... ...+...... ...+.....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL 274 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHH
Confidence 632 2233345556789999999999888777777766666555443221 1122222221 1122233334333
Q ss_pred Hh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEE
Q 003268 489 LD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 489 l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~V 566 (835)
+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 275 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 275 YETLTITQAVIFINTRRKVDWLTEKMHAR--DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHSSCCSSCEEECSCHHHHHHHHHHHHTT--TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHhCCCCcEEEEeCCHHHHHHHHHHHHhc--CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 33 4579999999999999999999987 8899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 567 Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
|+++.|. +..+|.||+||+||.|+.|.||+++++.
T Consensus 353 i~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 387 (414)
T 3eiq_A 353 INYDLPT-NRENYIHRIGRGGRFGRKGVAINMVTEE 387 (414)
T ss_dssp EESSCCS-STHHHHHHSCCC-------CEEEEECST
T ss_pred EEeCCCC-CHHHhhhhcCcccCCCCCceEEEEEcHH
Confidence 9999996 9999999999999999999999999876
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-41 Score=379.20 Aligned_cols=325 Identities=18% Similarity=0.159 Sum_probs=254.5
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcc
Q 003268 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAP 339 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvP 339 (835)
.++.++ +.+.+.+.+...|+|+|.+|++.++. ++++++++|||+|||++|+.+++..+. .+.+++|++|
T Consensus 25 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 25 DFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT-------GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp GGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH-------TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc-------CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 345566 77888877777899999999999875 367999999999999999999988765 3568999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccc
Q 003268 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEE 414 (835)
Q Consensus 340 tr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEa 414 (835)
|++|+.|+++.++..+. ..++++..++++....... ..+ .+.++|+|+||+.|.+ ...+.++++||+||+
T Consensus 98 ~~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGK-HCGISCMVTTGGTNLRDDI---LRL-NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp SHHHHHHHHHHHHHHTT-TTTCCEEEECSSSCHHHHH---HHT-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred CHHHHHHHHHHHHHHhc-ccCceEEEEeCCcchHHHH---HHh-cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999987444 3478899998887654432 222 3568999999998753 245688999999999
Q ss_pred cccchhh----HHHH-HhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC-CccceeEEecccCHHHHHHHHHHH
Q 003268 415 QRFGVKQ----KEKI-ASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP-ERLPIKTHLSAFSKEKVISAIKYE 488 (835)
Q Consensus 415 Hr~g~~~----~e~l-~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~-~r~~V~~~~~~~~~~~~~~~i~~~ 488 (835)
|++.... ...+ ..+....+++++|||+++.........+..+..+..... ....+..++...........+...
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHH
Confidence 9875432 2222 233567899999999987766655555555444433221 122333333333222223333333
Q ss_pred H--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEE
Q 003268 489 L--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI 566 (835)
Q Consensus 489 l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~V 566 (835)
+ ..+++++|||++++.++.+++.|... ++.+..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 253 FSKLQINQAIIFCNSTNRVELLAKKITDL--GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp HHHSCCSEEEEECSSHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred HhhcCCCcEEEEEecHHHHHHHHHHHHhc--CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 3 24579999999999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 567 IVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 567 Ii~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+++.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 331 i~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 331 INFDFPK-TAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp EESSCCS-SHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred EEeCCCC-CHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 9999995 99999999999999999999999998764
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.1e-42 Score=384.10 Aligned_cols=322 Identities=20% Similarity=0.196 Sum_probs=250.9
Q ss_pred CCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcccHH
Q 003268 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTIV 342 (835)
Q Consensus 267 ~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPtr~ 342 (835)
.++ +.+.+...+...|+|+|.+|++.++. ++|+++++|||||||++|+.+++..+. .+.+++|++||++
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQIIK-------GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 116 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHH
Confidence 344 66777776666899999999999874 468999999999999999999987764 4679999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccccc
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~ 417 (835)
|+.|+++++.. +....++.+..+.|+....+.. ..+..+ ++|+|+||+.|.+ .+.+.++++||+||+|++
T Consensus 117 L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~---~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 117 LAVQIQKGLLA-LGDYMNVQCHACIGGTNVGEDI---RKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 191 (410)
T ss_dssp HHHHHHHHHHH-HTTTTTCCEEEECTTSCHHHHH---HHHHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHH-HhccCCeEEEEEECCCCHHHHH---HHhhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHH
Confidence 99999999987 6555578999999887765533 333334 7999999988754 345678999999999986
Q ss_pred chh----h-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC--CccceeEEeccc-CHHHHHHHHHHHH
Q 003268 418 GVK----Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAF-SKEKVISAIKYEL 489 (835)
Q Consensus 418 g~~----~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~--~r~~V~~~~~~~-~~~~~~~~i~~~l 489 (835)
... . ...+..+..+.+++++|||+++.........+.++..+..... ....+...+... ........+...+
T Consensus 192 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 271 (410)
T 2j0s_A 192 LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 271 (410)
T ss_dssp TSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHH
Confidence 322 1 2223344567899999999987765555555555544433211 111223322211 1111222333322
Q ss_pred --hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEE
Q 003268 490 --DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 490 --~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VI 567 (835)
...++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 272 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi 349 (410)
T 2j0s_A 272 DTLTITQAVIFCNTKRKVDWLTEKMREA--NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII 349 (410)
T ss_dssp HHHTSSEEEEECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE
T ss_pred HhcCCCcEEEEEcCHHHHHHHHHHHHhC--CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE
Confidence 23579999999999999999999987 88999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 568 VQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 568 i~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++.|. +...|.||+||+||.|+.|.|++|+++.+
T Consensus 350 ~~~~p~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 350 NYDLPN-NRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp ESSCCS-SHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred EECCCC-CHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 999995 99999999999999999999999998764
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.4e-41 Score=373.63 Aligned_cols=325 Identities=21% Similarity=0.252 Sum_probs=255.0
Q ss_pred CCCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEE
Q 003268 262 RPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVL 337 (835)
Q Consensus 262 ~~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVL 337 (835)
+..++.++ +.+.+.+.+...|+|+|.+|++.++. ..++++++++|||+|||++|+.+++..+. .+++++|+
T Consensus 7 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-----~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH-----NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp STTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHC-----SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc-----CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 34456666 88889888888999999999999874 23479999999999999999999988764 36789999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEec
Q 003268 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIID 412 (835)
+||++|+.|+++.+.. +....++.+....+...... ....++|+|+||+.|.+ ...+.++++||+|
T Consensus 82 ~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 82 APSRELARQTLEVVQE-MGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp CSSHHHHHHHHHHHHH-HTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHHH-HhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 9999999999999987 55555788888777543221 12358999999998753 2457889999999
Q ss_pred cccccch-----hhH-HHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC--CccceeEEeccc-CHHHHHH
Q 003268 413 EEQRFGV-----KQK-EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAF-SKEKVIS 483 (835)
Q Consensus 413 EaHr~g~-----~~~-e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~--~r~~V~~~~~~~-~~~~~~~ 483 (835)
|+|++.. ... ........+.+++++|||+.+.........+.+...+..... ....+...+... .......
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9998643 111 223344567899999999988766666666555554443221 112233333222 3333344
Q ss_pred HHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC
Q 003268 484 AIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 484 ~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp 561 (835)
.+...+. .+++++|||++++.++.+++.|+.. +..+..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|
T Consensus 233 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip 310 (395)
T 3pey_A 233 VLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE--GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIP 310 (395)
T ss_dssp HHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCT
T ss_pred HHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcc
Confidence 4444433 4589999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred CcCEEEEecCCCC-----CHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 562 NANTIIVQDVQQF-----GLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 562 ~v~~VIi~d~p~~-----sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++++||+++.|.+ +..+|.||+||+||.|+.|.|++++++.
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 9999999999853 7899999999999999999999999754
No 13
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6e-42 Score=385.95 Aligned_cols=309 Identities=17% Similarity=0.220 Sum_probs=242.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
+.+.|.+.++|+|||+|.+|++.++. ++|+++++|||||||++|+.+++.....+++++|++||++|+.|+++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTT-------TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHH
Confidence 44567777889999999999999864 46899999999999999999988888889999999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc---cccccccEEEecccccc---------
Q 003268 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRF--------- 417 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~---l~~~~l~lVIIDEaHr~--------- 417 (835)
+++. +.. .++++..++|+.+..++...+..+..|.++|+|+||+.|.+. +.+.++++|||||+|++
T Consensus 83 ~~~~-~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~ 160 (414)
T 3oiy_A 83 RLQK-LAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDT 160 (414)
T ss_dssp HHHH-HCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHH
T ss_pred HHHH-Hcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhh
Confidence 9998 555 589999999999988888888889888899999999998543 45679999999999974
Q ss_pred -----chhh--HH-HHHhhc-----------CCceEEEeecCCChhhHH-HHHhcCCCcceeeCCCCCccceeEEeccc-
Q 003268 418 -----GVKQ--KE-KIASFK-----------ISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHLSAF- 476 (835)
Q Consensus 418 -----g~~~--~e-~l~~~~-----------~~~~vL~lSATp~p~tl~-~~~~~~~d~s~i~~~p~~r~~V~~~~~~~- 476 (835)
|+.. .. .+..++ .+.+++++|||+.|.... .....+....+... ......+...+...
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 239 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL-VSVARNITHVRISSR 239 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCC-CCCCCSEEEEEESSC
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCcc-ccccccchheeeccC
Confidence 2211 22 233333 778999999996554321 11111111111111 11112233333222
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEE-EEcCCCCHHHHHHHHHHhhcCCeeEEEE----C
Q 003268 477 SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSRQLEETMEKFAQGAIKILIC----T 551 (835)
Q Consensus 477 ~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~-~lHG~m~~~ere~vl~~F~~g~~~VLVa----T 551 (835)
..+.+.+.+.. .+++++|||+++..++.+++.|... ++.+. .+||+ +|+ ++.|++|+++|||| |
T Consensus 240 ~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T 308 (414)
T 3oiy_A 240 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYY 308 (414)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHT--TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTT
T ss_pred HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHc--CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcC
Confidence 33344444433 4589999999999999999999998 88898 88985 444 99999999999999 9
Q ss_pred CcCccCCCCCC-cCEEEEecCCC-CCHhHHHHHhcccCCCC----CceEEEEEe
Q 003268 552 NIVESGLDIQN-ANTIIVQDVQQ-FGLAQLYQLRGRVGRAD----KEAHAYLFY 599 (835)
Q Consensus 552 ~iie~GIDIp~-v~~VIi~d~p~-~sl~~l~Qr~GRaGR~g----~~G~ay~l~ 599 (835)
+++++|+|+|+ +++||+++.|. .+..+|+||+||+||.| +.|.|++|+
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred chhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999999 99999999993 38999999999999987 589999999
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-41 Score=398.04 Aligned_cols=325 Identities=21% Similarity=0.204 Sum_probs=248.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC-------CEEEEEcccHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTIV 342 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g-------~qvlVLvPtr~ 342 (835)
+.+.+...+...|||+|.+||+.++. ..++|+|+++|||||||++|++|++..+..+ .+++|++||++
T Consensus 83 l~~~l~~~g~~~~~~~Q~~~i~~~l~-----~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 83 IHKAITRMEFPGLTPVQQKTIKPILS-----SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHHS-----SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 66677666666899999999999873 1357999999999999999999999876543 48999999999
Q ss_pred HHHHHHHHHHHhhc---CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEecc
Q 003268 343 LAKQHFDVVSERFS---KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDE 413 (835)
Q Consensus 343 La~Q~~~~~~~~f~---~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDE 413 (835)
|+.|+++.++..+. ..+...+..+.++.+... .+..+..+.++|+|+||+.|.+ ...+.++++|||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 234 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 234 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeC
Confidence 99999999987543 223466777777766544 4445555569999999998864 23468899999999
Q ss_pred ccccc---h-hhHHHH----Hhh----cCCceEEEeecCCChhhHHHHHhcCCCcceeeC--C----CCCccceeEEe--
Q 003268 414 EQRFG---V-KQKEKI----ASF----KISVDVLTLSATPIPRTLYLALTGFRDASLIST--P----PPERLPIKTHL-- 473 (835)
Q Consensus 414 aHr~g---~-~~~e~l----~~~----~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~--~----p~~r~~V~~~~-- 473 (835)
||++. + ...+.+ ... ..+.++++||||+++.....+...+.+...+.. . +.....+...+
T Consensus 235 ah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (563)
T 3i5x_A 235 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 314 (563)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE
T ss_pred HHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE
Confidence 99863 2 122222 221 237789999999988766666555555443321 1 11111222221
Q ss_pred cccCHH---HHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCC-CCcEEEEcCCCCHHHHHHHHHHhhcCCee
Q 003268 474 SAFSKE---KVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIK 546 (835)
Q Consensus 474 ~~~~~~---~~~~~i~~~l---~~ggqvlVf~~~v~~ie~l~~~L~~~~p-~~~V~~lHG~m~~~ere~vl~~F~~g~~~ 546 (835)
...... .....+...+ ..+++++|||+++..++.+++.|.+.++ ++.+..+||+|++.+|+.+++.|++|+.+
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred CchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 111111 2233333333 4568999999999999999999998765 78999999999999999999999999999
Q ss_pred EEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 547 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 547 VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||||+++++|||+|++++||+++.|. ++.+|+||+||+||.|+.|.|++++++.+
T Consensus 395 vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 450 (563)
T 3i5x_A 395 ILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDE 450 (563)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred EEEEcchhhcCCCcccCCEEEEECCCC-chhhhhhhcCccccCCCCceEEEEEchhH
Confidence 999999999999999999999999996 99999999999999999999999998763
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.3e-41 Score=394.95 Aligned_cols=319 Identities=18% Similarity=0.197 Sum_probs=257.7
Q ss_pred CCCCh-HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 265 YPKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
++.++ +...+.+.|.| .|+|+|.++|+.++. ++|+|+++|||+|||++|++|++. .+++++|++|+++
T Consensus 26 ~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~-------g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~ 95 (591)
T 2v1x_A 26 FPWSGKVKDILQNVFKLEKFRPLQLETINVTMA-------GKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLIS 95 (591)
T ss_dssp STTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT-------TCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHH
Confidence 55555 67778887766 899999999999975 478999999999999999999864 4679999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhH--hcCCcceEecchHhhhc----------ccccccccEEE
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI--KHGHLNIIVGTHSLLGS----------RVVYNNLGLLV 410 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l--~~g~~dIIIgT~~~L~~----------~l~~~~l~lVI 410 (835)
|+.|+++.+... |+.+..+++..+..+....+..+ ..+.++|+|+||+.|.. ...+.++++||
T Consensus 96 L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 96 LMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 999999999873 68899999999888887777777 46789999999987742 12356899999
Q ss_pred eccccccc-----h----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcC--CCcceeeCCCCCccceeEEecc--cC
Q 003268 411 VDEEQRFG-----V----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGF--RDASLISTPPPERLPIKTHLSA--FS 477 (835)
Q Consensus 411 IDEaHr~g-----~----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~--~d~s~i~~~p~~r~~V~~~~~~--~~ 477 (835)
|||||++. + .....+....++.++++||||+.+.........+ .+...+.. ...+..+...+.. ..
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~ 249 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSN 249 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSS
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCc
Confidence 99999852 1 1223455556789999999999887665544433 23323322 2223333333222 22
Q ss_pred HHHHHHHHHHHHh---cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcC
Q 003268 478 KEKVISAIKYELD---RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIV 554 (835)
Q Consensus 478 ~~~~~~~i~~~l~---~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~ii 554 (835)
.......+.+.+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|.+|+.+|||||+++
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~--g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL--GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 3445556666554 4689999999999999999999988 8899999999999999999999999999999999999
Q ss_pred ccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 555 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 555 e~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
++|||+|++++||++++|. +++.|+|++||+||.|.+|.|+++|++.
T Consensus 328 ~~GID~p~V~~VI~~~~p~-s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSK-SMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp CTTCCCSCEEEEEESSCCS-SHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred hcCCCcccccEEEEeCCCC-CHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 9999999999999999997 9999999999999999999999999754
No 16
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.3e-41 Score=396.28 Aligned_cols=325 Identities=21% Similarity=0.207 Sum_probs=249.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC-------CEEEEEcccHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTIV 342 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g-------~qvlVLvPtr~ 342 (835)
+.+.+...+...|||+|.+||+.++. ..++|+|+++|||+|||++|++|++..+..+ .+++|++||++
T Consensus 32 l~~~l~~~g~~~~~~~Q~~~i~~il~-----~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 32 IHKAITRMEFPGLTPVQQKTIKPILS-----SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp HHHHHHTTTCSSCCHHHHHHHHHHHC-----SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHc-----cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 66777666666799999999999873 1357999999999999999999998776443 48999999999
Q ss_pred HHHHHHHHHHHhhc---CCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEecc
Q 003268 343 LAKQHFDVVSERFS---KYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDE 413 (835)
Q Consensus 343 La~Q~~~~~~~~f~---~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDE 413 (835)
|+.|+++.+...+. ..+.+.+..+.++..... .+..+..+.++|+|+||+.|.+ ...+.++++|||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDE 183 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDE 183 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEET
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEC
Confidence 99999999987542 233466777777765544 4455555569999999998864 23568899999999
Q ss_pred ccccc---h-hhHHHHH----hh----cCCceEEEeecCCChhhHHHHHhcCCCcceeeCC------CCCccceeEEe--
Q 003268 414 EQRFG---V-KQKEKIA----SF----KISVDVLTLSATPIPRTLYLALTGFRDASLISTP------PPERLPIKTHL-- 473 (835)
Q Consensus 414 aHr~g---~-~~~e~l~----~~----~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~------p~~r~~V~~~~-- 473 (835)
||++. + ...+.+. .. ..+.++++||||+++.....+...+.++..+... +.....+...+
T Consensus 184 ah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 263 (579)
T 3sqw_A 184 ADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI 263 (579)
T ss_dssp HHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE
T ss_pred hHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEE
Confidence 99863 2 2222222 11 1367999999999887766666666554433221 11111222222
Q ss_pred cccCHH---HHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCC-CCcEEEEcCCCCHHHHHHHHHHhhcCCee
Q 003268 474 SAFSKE---KVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIK 546 (835)
Q Consensus 474 ~~~~~~---~~~~~i~~~l---~~ggqvlVf~~~v~~ie~l~~~L~~~~p-~~~V~~lHG~m~~~ere~vl~~F~~g~~~ 546 (835)
...... .....+...+ ..+++++|||+++..++.+++.|...++ ++.+..+||+|++.+|+.+++.|++|+.+
T Consensus 264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~ 343 (579)
T 3sqw_A 264 SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG 343 (579)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred ecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe
Confidence 111111 2333333333 3468999999999999999999998765 78999999999999999999999999999
Q ss_pred EEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 547 ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 547 VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||||+++++|||+|++++||+++.|. +..+|+||+||+||.|+.|.|++++++.+
T Consensus 344 vLVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 344 ILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred EEEEcchhhcCCCcccCCEEEEcCCCC-CHHHhhhhccccccCCCCceEEEEEcccH
Confidence 999999999999999999999999996 99999999999999999999999998753
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1e-40 Score=388.88 Aligned_cols=316 Identities=21% Similarity=0.232 Sum_probs=253.7
Q ss_pred CCCh-HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 266 PKNP-AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
+.++ +.+.+.+.|.| .|+|+|.++|+.+++ ++|+++++|||+|||++|++|++. .++.++|++|+++|
T Consensus 8 ~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~-------g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL 77 (523)
T 1oyw_A 8 NLESGAKQVLQETFGYQQFRPGQEEIIDTVLS-------GRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISL 77 (523)
T ss_dssp SHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHH
Confidence 3344 67778887777 899999999999874 468999999999999999988864 35789999999999
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEeccccccc
Q 003268 344 AKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 344 a~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~g 418 (835)
+.|+++.+.. + ++.+..+++..+..+....+..+..|.++|+|+||+.|... +...++++|||||+|++.
T Consensus 78 ~~q~~~~l~~-~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 78 MKDQVDQLQA-N----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp HHHHHHHHHH-T----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred HHHHHHHHHH-c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 9999999986 3 68899999998888887788888889999999999988532 344789999999999863
Q ss_pred h---------hhHHHHHhhcCCceEEEeecCCChhhHHHHH--hcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHH
Q 003268 419 V---------KQKEKIASFKISVDVLTLSATPIPRTLYLAL--TGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKY 487 (835)
Q Consensus 419 ~---------~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~--~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~ 487 (835)
. .....+....++.+++++|||+.+....... .++.++.++.. ...+..+...+..... ....+.+
T Consensus 153 ~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~r~~l~~~v~~~~~--~~~~l~~ 229 (523)
T 1oyw_A 153 QWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFDRPNIRYMLMEKFK--PLDQLMR 229 (523)
T ss_dssp TTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-CCCCTTEEEEEEECSS--HHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-CCCCCceEEEEEeCCC--HHHHHHH
Confidence 1 1122234445678999999999887654332 34444444332 2333344333332211 1222333
Q ss_pred HHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCE
Q 003268 488 ELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565 (835)
Q Consensus 488 ~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~ 565 (835)
.+. .+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|.+|+.+|||||+++++|||+|++++
T Consensus 230 ~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~ 307 (523)
T 1oyw_A 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSK--GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 307 (523)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCE
T ss_pred HHHhcCCCcEEEEeCCHHHHHHHHHHHHHC--CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccE
Confidence 332 5679999999999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 566 VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||++++|. ++++|+||+||+||.|..|.|++++++.
T Consensus 308 VI~~~~p~-s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 308 VVHFDIPR-NIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp EEESSCCS-SHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EEEECCCC-CHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 99999996 9999999999999999999999999754
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=399.42 Aligned_cols=323 Identities=21% Similarity=0.211 Sum_probs=141.1
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC---CEEEEEcccH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG---KQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g---~qvlVLvPtr 341 (835)
+.++ +.+.+.+.+...|||+|.+|++.++. ..++++|++||||||||++|+++++..+..+ ++++|++||+
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~-----~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTS-----BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHc-----CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 3444 67788887778999999999999864 2358999999999999999999998776543 3899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEecccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDEaH 415 (835)
+|+.|+++.+.......+++.+.+..++..... ......+|+|+||+.|.+ .+.+.++++|||||+|
T Consensus 173 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 999999999987444445778888877654322 112347999999998854 3456899999999999
Q ss_pred ccch----h-h-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cceeEEecccC-HHHHHHHHH
Q 003268 416 RFGV----K-Q-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFS-KEKVISAIK 486 (835)
Q Consensus 416 r~g~----~-~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~~-~~~~~~~i~ 486 (835)
++.. . . ...+..+..+.+++++|||+++.....+...+.++..+....... ..+...+.... .......+.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHH
Confidence 8632 1 1 122334456789999999999888777777777766665432211 11112111111 112222333
Q ss_pred HHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC
Q 003268 487 YELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 487 ~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
..+. .+++++|||+++..++.+++.|... +..+.++||+|++.+|+.+++.|++|+.+|||||+++++|||+|+++
T Consensus 326 ~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 326 NLYGAITIAQAMIFCHTRKTASWLAAELSKE--GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccCCceEEEeCcHHHHHHHHHHHHhC--CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCC
Confidence 3222 3578999999999999999999987 78999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC-----CCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 565 TIIVQDVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 565 ~VIi~d~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
+||++|.|. .+..+|+||+||+||.|+.|.|++|+++.
T Consensus 404 ~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 404 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp -------------------------------------------
T ss_pred EEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 999999984 25689999999999999999999999765
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.9e-40 Score=358.73 Aligned_cols=305 Identities=17% Similarity=0.172 Sum_probs=239.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~ 349 (835)
+.+.+.+.+...|+|+|.+|++.+++ ++++++++|||+|||++|+.+++.. +.+++|++|+++|+.|+++
T Consensus 5 i~~~l~~~g~~~l~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 5 IEQAIREMGFKNFTEVQSKTIPLMLQ-------GKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhc-------CCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHH
Confidence 66777777777999999999999874 4689999999999999999888764 7899999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccch-----
Q 003268 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV----- 419 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g~----- 419 (835)
++++ +....++++..++++.+.......+ . .++|+|+||+.|.+ .+.+.++++||+||+|++..
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 75 HIRD-IGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHH-HTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHH-HhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 9987 5544478899999987765543333 2 38999999998764 24568899999999998632
Q ss_pred hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEeccc--CHHHHHHHHHHHHhcCCeEEE
Q 003268 420 KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFY 497 (835)
Q Consensus 420 ~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~--~~~~~~~~i~~~l~~ggqvlV 497 (835)
.....+.......+++++|||+++.........+.+...+... .....+....... ........+. ...+++++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lv 225 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-IGLANVEHKFVHVKDDWRSKVQALR--ENKDKGVIV 225 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-GGGGGEEEEEEECSSSSHHHHHHHH--TCCCSSEEE
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-cccCCceEEEEEeChHHHHHHHHHH--hCCCCcEEE
Confidence 1223344455677888999999887666666666665555332 1122222222211 1112222221 145689999
Q ss_pred EecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHh
Q 003268 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLA 577 (835)
Q Consensus 498 f~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~ 577 (835)
||++++.++.+++.|. .+..+||+|+..+|+++++.|++|+.+|||||+++++|+|+|++++||++++|. +..
T Consensus 226 f~~~~~~~~~l~~~l~------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~-s~~ 298 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ-DLR 298 (337)
T ss_dssp ECSCHHHHHHHHTTCT------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS-SHH
T ss_pred EEcCHHHHHHHHHHhh------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC-CHH
Confidence 9999999888877665 578999999999999999999999999999999999999999999999999995 999
Q ss_pred HHHHHhcccCCCCCceEEEEEec
Q 003268 578 QLYQLRGRVGRADKEAHAYLFYP 600 (835)
Q Consensus 578 ~l~Qr~GRaGR~g~~G~ay~l~~ 600 (835)
+|.||+||+||.|+.|.|++++.
T Consensus 299 ~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 299 TYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp HHHHHHTTBCGGGCCEEEEEEES
T ss_pred HhhHhcCccccCCCCceEEEEEe
Confidence 99999999999999999999998
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-41 Score=377.01 Aligned_cols=324 Identities=22% Similarity=0.197 Sum_probs=142.8
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPt 340 (835)
++.++ +.+.+...+...|+|+|.+|++.++. ++++++++|||+|||++|+.+++..+. .+++++|++||
T Consensus 26 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 26 MELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 34555 77888877777999999999999875 368999999999999999999987764 35799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++|+.|+++.+...+ ...++++..++|+.+..+....+. .++|+|+||+.|.. ...+.++++||+||+|
T Consensus 99 ~~L~~q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 99 RELALQIQKVVMALA-FHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp HHHHHHHHHHHHHHT-TTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHh-ccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 999999999998744 434789999999887765544432 47999999998754 2346789999999999
Q ss_pred ccch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cceeEEecccCH-HHHHHHHHH
Q 003268 416 RFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAFSK-EKVISAIKY 487 (835)
Q Consensus 416 r~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~~~-~~~~~~i~~ 487 (835)
++.. .....+..+.+..+++++||||++.........+.++..+....... ..+......... +.....+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHH
Confidence 8632 12233444567889999999998876666665665554443322111 111111111111 111222222
Q ss_pred HH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCE
Q 003268 488 EL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT 565 (835)
Q Consensus 488 ~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~ 565 (835)
.+ ..+++++|||++++.++.+++.|++. ++.+..+||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~ 330 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHc--CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCE
Confidence 22 23579999999999999999999987 788999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 566 IIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 566 VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||+++.|. +..+|.||+||+||.|+.|.|++++++++.
T Consensus 331 Vi~~~~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 368 (394)
T 1fuu_A 331 VINYDLPA-NKENYIHRIGRGGRFGRKGVAINFVTNEDV 368 (394)
T ss_dssp ---------------------------------------
T ss_pred EEEeCCCC-CHHHHHHHcCcccCCCCCceEEEEEchhHH
Confidence 99999985 899999999999999999999999987754
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-39 Score=393.68 Aligned_cols=318 Identities=20% Similarity=0.206 Sum_probs=237.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHH
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIV 342 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~ 342 (835)
++.++ +.+.+.+.+...|+|+|.+|++.++. .+++++++||||||||++|..+++..+. .+.+++|++|+++
T Consensus 13 l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~------~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~ 86 (715)
T 2va8_A 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLL------EGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRA 86 (715)
T ss_dssp SSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTT------TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred cCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhc------CCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHH
Confidence 45566 55555553344999999999987332 1579999999999999999999987765 7899999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc----c-cccccccEEEecccccc
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----R-VVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----~-l~~~~l~lVIIDEaHr~ 417 (835)
||.|++++++ .+..+ |++|+.++|+....+. .+ +.++|+|+||+.|.. . ..++++++|||||+|++
T Consensus 87 La~q~~~~~~-~~~~~-g~~v~~~~G~~~~~~~-----~~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 87 LTNEKYLTFK-DWELI-GFKVAMTSGDYDTDDA-----WL--KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp HHHHHHHHHG-GGGGG-TCCEEECCSCSSSCCG-----GG--GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGG
T ss_pred HHHHHHHHHH-HhhcC-CCEEEEEeCCCCCchh-----hc--CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhc
Confidence 9999999995 56665 7899999997654431 11 358999999987743 2 23789999999999997
Q ss_pred chh----hHHHHHhhcCCceEEEeecCCC-hhhHHHHHhcCCCcceeeCCCCCccceeEE--------------ecc---
Q 003268 418 GVK----QKEKIASFKISVDVLTLSATPI-PRTLYLALTGFRDASLISTPPPERLPIKTH--------------LSA--- 475 (835)
Q Consensus 418 g~~----~~e~l~~~~~~~~vL~lSATp~-p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~--------------~~~--- 475 (835)
+.. ..+.+.....+.++|+||||+. +..+...+ +...+... ....++... +..
T Consensus 158 ~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l----~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 158 NDPERGPVVESVTIRAKRRNLLALSATISNYKQIAKWL----GAEPVATN-WRPVPLIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp GCTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHH----TCEEEECC-CCSSCEEEEEEEECSSTTEEEEEETTSCE
T ss_pred CCcccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHh----CCCccCCC-CCCCCceEEEEecCCcccceeeecCcchh
Confidence 531 2233332223899999999986 33332222 22222211 111222211 111
Q ss_pred --c-CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC----------------------------------
Q 003268 476 --F-SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG---------------------------------- 518 (835)
Q Consensus 476 --~-~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~---------------------------------- 518 (835)
. ..+.....+.+.+..+++++|||+++++++.+++.|.+..+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred hhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 0 013456677777788899999999999999999999875432
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE----ec-------CCCCCHhHHHHHhcccC
Q 003268 519 VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD-------VQQFGLAQLYQLRGRVG 587 (835)
Q Consensus 519 ~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi----~d-------~p~~sl~~l~Qr~GRaG 587 (835)
..+.++||+|+..+|+.+++.|++|.++|||||+++++|||+|++++||+ || .| .+.++|.||+||||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~-~s~~~~~Qr~GRaG 391 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDE-IPIMEYKQMSGRAG 391 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC---------------CHHHHHHHHTTBC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCc-CCHHHHHHHhhhcC
Confidence 35999999999999999999999999999999999999999999999998 77 45 48999999999999
Q ss_pred CCC--CceEEEEEecCCC
Q 003268 588 RAD--KEAHAYLFYPDKS 603 (835)
Q Consensus 588 R~g--~~G~ay~l~~~~~ 603 (835)
|.| ..|.||+++++.+
T Consensus 392 R~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 392 RPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCceEEEEeCCch
Confidence 988 4899999998664
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.3e-39 Score=391.96 Aligned_cols=311 Identities=20% Similarity=0.256 Sum_probs=235.6
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHH
Q 003268 270 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 270 ~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~ 348 (835)
+.+.+.+ ++| +|+|+|.++++.+.. +++++++||||||||++|..+++..+..+.+++|++|+++|+.|++
T Consensus 14 ~~~~l~~-~g~~~l~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~ 85 (702)
T 2p6r_A 14 AVGILKE-EGIEELFPPQAEAVEKVFS-------GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKY 85 (702)
T ss_dssp HHHHHHC-C---CCCCCCHHHHHHHTT-------CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHh-CCCCCCCHHHHHHHHHHhC-------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHH
Confidence 3444444 445 999999999999642 5799999999999999999999988878899999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc----c-cccccccEEEeccccccchhh--
Q 003268 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----R-VVYNNLGLLVVDEEQRFGVKQ-- 421 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----~-l~~~~l~lVIIDEaHr~g~~~-- 421 (835)
++++ .+..+ |++++.++|+....+. ..+.++|+|+||+.+.. . ..+.++++|||||+|+++...
T Consensus 86 ~~~~-~~~~~-g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~ 156 (702)
T 2p6r_A 86 ESFK-KWEKI-GLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRG 156 (702)
T ss_dssp HHHT-TTTTT-TCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTH
T ss_pred HHHH-HHHhc-CCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcc
Confidence 9995 57665 7999999997654331 11468999999987743 2 236899999999999964311
Q ss_pred --H----HHHHhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceeeCCCCCccceeEEeccc------CH-------HHH
Q 003268 422 --K----EKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTHLSAF------SK-------EKV 481 (835)
Q Consensus 422 --~----e~l~~~~~~~~vL~lSATp~p-~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~------~~-------~~~ 481 (835)
. ..++...++.++|+||||+.+ ..+. .+.+...+.. +....++...+... .. ...
T Consensus 157 ~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~----~~l~~~~~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (702)
T 2p6r_A 157 ATLEILVTKMRRMNKALRVIGLSATAPNVTEIA----EWLDADYYVS-DWRPVPLVEGVLCEGTLELFDGAFSTSRRVKF 231 (702)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHH----HHTTCEEEEC-CCCSSCEEEEEECSSEEEEEETTEEEEEECCH
T ss_pred cHHHHHHHHHHhcCcCceEEEECCCcCCHHHHH----HHhCCCcccC-CCCCccceEEEeeCCeeeccCcchhhhhhhhH
Confidence 1 223344678999999999863 2222 1222333322 22223333221100 00 014
Q ss_pred HHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCC----------------------------CCcEEEEcCCCCHHHH
Q 003268 482 ISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP----------------------------GVDIAIAHGQQYSRQL 533 (835)
Q Consensus 482 ~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p----------------------------~~~V~~lHG~m~~~er 533 (835)
...+.+.+..+++++|||+++++++.++..|.+..+ +..+.++||+|++++|
T Consensus 232 ~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 311 (702)
T 2p6r_A 232 EELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQR 311 (702)
T ss_dssp HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHH
Confidence 556666677889999999999999999998876421 1358899999999999
Q ss_pred HHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE----ec---CCCCCHhHHHHHhcccCCCC--CceEEEEEecCCC
Q 003268 534 EETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD---VQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKS 603 (835)
Q Consensus 534 e~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi----~d---~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~ 603 (835)
+.+++.|++|.++|||||+++++|||+|++++||+ || .| ++..+|.||+|||||.| ..|.||+++++.+
T Consensus 312 ~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~-~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 312 RVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR-IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE-CCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCc-CCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999999999999999999999999998 65 34 58999999999999988 5899999998764
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-39 Score=393.87 Aligned_cols=319 Identities=18% Similarity=0.187 Sum_probs=238.1
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHH
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIV 342 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~ 342 (835)
++.++ +.+.+.+.+...|+|+|.+|++.++. + +++++++||||||||++|.++++..+. .+.+++|++|+++
T Consensus 6 l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~---~---~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~ra 79 (720)
T 2zj8_A 6 LRVDERIKSTLKERGIESFYPPQAEALKSGIL---E---GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKA 79 (720)
T ss_dssp CCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGG---G---TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGG
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc---C---CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 45566 55666654444999999999987322 1 579999999999999999999887665 6889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccccc
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~ 417 (835)
|+.|++++++ .|..+ |++|+.++|......+ ..+.++|+|+||+.+.. ...+.++++|||||+|.+
T Consensus 80 La~q~~~~~~-~l~~~-g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 80 LAEEKFQEFQ-DWEKI-GLRVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp GHHHHHHHTG-GGGGG-TCCEEEECSCSSCCCG-------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred HHHHHHHHHH-HHHhc-CCEEEEecCCCCcccc-------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999995 46665 7899999997654331 12468999999987742 223689999999999987
Q ss_pred ch-----hhHHHHHhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceeeCCCCCccceeEEe--------ccc---CHHH
Q 003268 418 GV-----KQKEKIASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPPERLPIKTHL--------SAF---SKEK 480 (835)
Q Consensus 418 g~-----~~~e~l~~~~~~~~vL~lSATp~p-~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~--------~~~---~~~~ 480 (835)
+. .....+..++.+.++|+||||+.. ..+. .+.+...+... ....++...+ ... ....
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~----~~l~~~~~~~~-~rp~~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELA----EWLNAELIVSD-WRPVKLRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHH----HHTTEEEEECC-CCSSEEEEEEEETTEEEETTSCEEECSS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHH----HHhCCcccCCC-CCCCcceEEEEeCCeeeccccchhhhhH
Confidence 53 122234445558999999999854 2221 12223222221 1122222211 000 0123
Q ss_pred HHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCC-------------------------------CcEEEEcCCCC
Q 003268 481 VISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPG-------------------------------VDIAIAHGQQY 529 (835)
Q Consensus 481 ~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~-------------------------------~~V~~lHG~m~ 529 (835)
....+.+.+..+++++|||++++.++.++..|.+..+. ..+.++||+|+
T Consensus 226 ~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 226 WEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp TTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 34555666678899999999999999999988764211 25999999999
Q ss_pred HHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE----ec---CCCCCHhHHHHHhcccCCCC--CceEEEEEec
Q 003268 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QD---VQQFGLAQLYQLRGRVGRAD--KEAHAYLFYP 600 (835)
Q Consensus 530 ~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi----~d---~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~ 600 (835)
+.+|+.+++.|++|.++|||||+++++|||+|++++||+ || ...++..+|+||+|||||.| ..|.||++++
T Consensus 306 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999999999987 55 22358999999999999988 5899999998
Q ss_pred CCC
Q 003268 601 DKS 603 (835)
Q Consensus 601 ~~~ 603 (835)
+.+
T Consensus 386 ~~~ 388 (720)
T 2zj8_A 386 SDD 388 (720)
T ss_dssp SSC
T ss_pred Ccc
Confidence 775
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-39 Score=402.26 Aligned_cols=309 Identities=20% Similarity=0.192 Sum_probs=231.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHH
Q 003268 271 IAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 271 ~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~ 350 (835)
...+...++|+|||+|.+||+.+.. ++++|++||||||||++|+++++..+..+++++|++||++|+.|++++
T Consensus 174 ~~~~~~~~~f~ltp~Q~~AI~~i~~-------g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 174 RVNEARTYPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp CCSCSSCCSSCCCHHHHHHHHHHTT-------TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHH
Confidence 3455778999999999999999853 579999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEeccccccchh-----
Q 003268 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRFGVK----- 420 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~g~~----- 420 (835)
|++.|+ .|++++|+.+. ++.++|+|+||+.|.+. ..+.++++|||||||+++..
T Consensus 247 l~~~~~-----~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~ 310 (1108)
T 3l9o_A 247 LLAEFG-----DVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVV 310 (1108)
T ss_dssp HHHHTS-----SEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHH
T ss_pred HHHHhC-----CccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHH
Confidence 998764 57888887652 25689999999987642 34678999999999987432
Q ss_pred hHHHHHhhcCCceEEEeecCCChhh-HHHHH-hcCCCcceeeCCCCCccceeEEecccC---------------------
Q 003268 421 QKEKIASFKISVDVLTLSATPIPRT-LYLAL-TGFRDASLISTPPPERLPIKTHLSAFS--------------------- 477 (835)
Q Consensus 421 ~~e~l~~~~~~~~vL~lSATp~p~t-l~~~~-~~~~d~s~i~~~p~~r~~V~~~~~~~~--------------------- 477 (835)
..+.+..++.+.++|+||||++... +.... .....+..+........++..++....
T Consensus 311 ~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~ 390 (1108)
T 3l9o_A 311 WEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQK 390 (1108)
T ss_dssp HHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHH
T ss_pred HHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHH
Confidence 3344566678899999999964321 11111 122222222222222333333221000
Q ss_pred -----------------------------------HHHHHHHHHHHHhc-CCeEEEEecCccChHHHHHHHHhhC-C---
Q 003268 478 -----------------------------------KEKVISAIKYELDR-GGQVFYVLPRIKGLEEPMDFLQQAF-P--- 517 (835)
Q Consensus 478 -----------------------------------~~~~~~~i~~~l~~-ggqvlVf~~~v~~ie~l~~~L~~~~-p--- 517 (835)
...+...+...... +++++|||+++..++.++..|.... .
T Consensus 391 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~ 470 (1108)
T 3l9o_A 391 AMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDD 470 (1108)
T ss_dssp HHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC-
T ss_pred HHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHH
Confidence 22222333333333 3699999999999999998875420 0
Q ss_pred ---------------------------------CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcC
Q 003268 518 ---------------------------------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNAN 564 (835)
Q Consensus 518 ---------------------------------~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~ 564 (835)
...|+++||+|++.+|+.++..|.+|.++|||||+++++|||+|+++
T Consensus 471 e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~ 550 (1108)
T 3l9o_A 471 EKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT 550 (1108)
T ss_dssp ---CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CE
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCce
Confidence 01289999999999999999999999999999999999999999999
Q ss_pred EEEEecCC-------CCCHhHHHHHhcccCCCC--CceEEEEEecCC
Q 003268 565 TIIVQDVQ-------QFGLAQLYQLRGRVGRAD--KEAHAYLFYPDK 602 (835)
Q Consensus 565 ~VIi~d~p-------~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~ 602 (835)
+||+++.+ ..+..+|+||+|||||.| ..|+||+++++.
T Consensus 551 ~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 551 VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred EEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 99965543 126678999999999999 789999999876
No 25
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-39 Score=370.72 Aligned_cols=318 Identities=21% Similarity=0.203 Sum_probs=214.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHHHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~La~Q 346 (835)
+.+.+.+.+...|+|+|.+|++.++++ .++++|+++|||||||++|+.+++..+.. +++++|++|+++|+.|
T Consensus 130 ~~~~l~~~g~~~p~~~Q~~ai~~i~~~-----~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q 204 (508)
T 3fho_A 130 XXXXXXXXXXXXXXKIQEKALPLLLSN-----PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQ 204 (508)
T ss_dssp ---------CEECCCTTSSSHHHHHCS-----SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHH
T ss_pred cccccccccccCcHHHHHHHHHHHHcC-----CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHH
Confidence 555666666668999999999998742 24799999999999999999999987654 3489999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccch--
Q 003268 347 HFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV-- 419 (835)
Q Consensus 347 ~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g~-- 419 (835)
++++++..+.. .++.+....+...... ....++|+|+||+.|.. .+.+.++++|||||+|++..
T Consensus 205 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 205 IMDVVTEMGKY-TEVKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHSTT-SSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHhCCc-cCeeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 99999985433 3455555444322111 12358999999998764 34578899999999998643
Q ss_pred ---hh-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc--cceeEEeccc-CHHHHHHHHHHHHh--
Q 003268 420 ---KQ-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER--LPIKTHLSAF-SKEKVISAIKYELD-- 490 (835)
Q Consensus 420 ---~~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r--~~V~~~~~~~-~~~~~~~~i~~~l~-- 490 (835)
.. ...+..+..+.++|++|||+.+...........+...+....... ..+...+... ........+...+.
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 11 223344566889999999998776666666666655554432211 1122222111 12223333333332
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.+++.|.+. +..+.++||+|+..+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~--~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~ 433 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTAD--GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYD 433 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTT--TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC--
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEEC
Confidence 4689999999999999999999887 78999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 571 VQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. .+..+|+||+||+||.|+.|.|++|+++.+
T Consensus 434 ~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~ 471 (508)
T 3fho_A 434 MPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 471 (508)
T ss_dssp --CC-----CTHHHHHTTSCCC-----CEEEEEECTTT
T ss_pred CCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChH
Confidence 883 378999999999999999999999998543
No 26
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.4e-38 Score=367.80 Aligned_cols=312 Identities=16% Similarity=0.169 Sum_probs=177.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-----CCEEEEEcccHHHHHHHHHHH
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-----g~qvlVLvPtr~La~Q~~~~~ 351 (835)
..+++|||+|.+|++.++. ++|+++++|||+|||++|+.+++..+.. +.+++|++||++|+.|+++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 3 METKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp -----CCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4578999999999999874 4689999999999999999999887765 778999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----c-ccccccEEEeccccccchhh-HHH
Q 003268 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ-KEK 424 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l-~~~~l~lVIIDEaHr~g~~~-~e~ 424 (835)
...+... ++++..++|+.+..... ..+.. .++|+|+||+.|.+. + .+.++++|||||||++.... ...
T Consensus 76 ~~~~~~~-~~~~~~~~g~~~~~~~~---~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 76 KHHFERQ-GYSVQGISGENFSNVSV---EKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 150 (556)
T ss_dssp HHHHGGG-TCCEEECCCC-----CH---HHHHH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHH
T ss_pred HHHhccc-CceEEEEeCCCCcchhH---HHhhC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHH
Confidence 9866544 68999999987544322 22223 389999999988642 3 57789999999999974321 111
Q ss_pred -----HHh----hcCCceEEEeecCCChhh---H----H--HHHhcCCCcceeeCCCCC--------ccceeEEe-cc--
Q 003268 425 -----IAS----FKISVDVLTLSATPIPRT---L----Y--LALTGFRDASLISTPPPE--------RLPIKTHL-SA-- 475 (835)
Q Consensus 425 -----l~~----~~~~~~vL~lSATp~p~t---l----~--~~~~~~~d~s~i~~~p~~--------r~~V~~~~-~~-- 475 (835)
+.. ..+..++|+|||||.... . . ..+....+...+.+.... ..+..... ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 230 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC
T ss_pred HHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC
Confidence 111 135688999999995321 0 0 000011111111111100 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 003268 476 -------------------------------------------------------------------------------- 475 (835)
Q Consensus 476 -------------------------------------------------------------------------------- 475 (835)
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (556)
T 4a2p_A 231 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 310 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------c-CHHHHHHHHHHHH--hcC
Q 003268 476 ------------------------------------------------------------F-SKEKVISAIKYEL--DRG 492 (835)
Q Consensus 476 ------------------------------------------------------------~-~~~~~~~~i~~~l--~~g 492 (835)
. ....+.+.+.+.. ..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~ 390 (556)
T 4a2p_A 311 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 390 (556)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCC
Confidence 0 0001111222222 456
Q ss_pred CeEEEEecCccChHHHHHHHHhhC----------CCCcEEEEcCCCCHHHHHHHHHHhhc-CCeeEEEECCcCccCCCCC
Q 003268 493 GQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 493 gqvlVf~~~v~~ie~l~~~L~~~~----------p~~~V~~lHG~m~~~ere~vl~~F~~-g~~~VLVaT~iie~GIDIp 561 (835)
++++|||+++..++.+++.|.... .|.....+||+|++.+|++++++|++ |+++|||||+++++|||+|
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCch
Confidence 899999999999999999998741 24455667888999999999999999 9999999999999999999
Q ss_pred CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++++||++|+|. ++.+|+||+|| ||. +.|.||+|+++.+
T Consensus 471 ~v~~VI~~d~p~-s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~ 509 (556)
T 4a2p_A 471 QCNLVVLYEYSG-NVTKMIQVRGR-GRA-AGSKCILVTSKTE 509 (556)
T ss_dssp --CEEEEETCCS-CHHHHHHC----------CCEEEEESCHH
T ss_pred hCCEEEEeCCCC-CHHHHHHhcCC-CCC-CCceEEEEEeCcc
Confidence 999999999994 99999999999 998 8899999998764
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=4.7e-38 Score=393.22 Aligned_cols=281 Identities=17% Similarity=0.234 Sum_probs=220.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~ 351 (835)
+.|...++|+|||+|.+|++.++. ++|+|+++|||||||++|+.+++..+..+.+++|++||++||.|+++++
T Consensus 69 ~~~~~~~gf~pt~iQ~~ai~~il~-------g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 69 SFFKKKFGKDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHTT-------TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHc-------CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHH
Confidence 456667888999999999999864 4799999999999999999998888888999999999999999999999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc---cccccccEEEecccccc-----------
Q 003268 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRF----------- 417 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~---l~~~~l~lVIIDEaHr~----------- 417 (835)
+. |. ..+++++.++|+.+..++...+..+..|.++|+|+||+.|.+. +.+.++++|||||||++
T Consensus 142 ~~-l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 142 QK-LA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp HT-TS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred HH-hh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhh
Confidence 97 66 4579999999999988888888899999999999999998543 45689999999999973
Q ss_pred ---chhh---HHHHHhhc-----------CCceEEEeecCCChhhHH-HHHhcCCCcceeeCCCCCccceeEEecc-cCH
Q 003268 418 ---GVKQ---KEKIASFK-----------ISVDVLTLSATPIPRTLY-LALTGFRDASLISTPPPERLPIKTHLSA-FSK 478 (835)
Q Consensus 418 ---g~~~---~e~l~~~~-----------~~~~vL~lSATp~p~tl~-~~~~~~~d~s~i~~~p~~r~~V~~~~~~-~~~ 478 (835)
|+.. ...+..++ .+.+++++|||+.|.... .....+....+.... .....+...+.. ...
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~-~~~~~i~~~~~~~~k~ 298 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLV-SVARNITHVRISSRSK 298 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCC-CCCCCEEEEEESCCCH
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCC-CCcCCceeEEEecCHH
Confidence 3322 22233333 678999999997665432 222222222221111 112223333322 233
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEE-EEcCCCCHHHHHHHHHHhhcCCeeEEEE----CCc
Q 003268 479 EKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIA-IAHGQQYSRQLEETMEKFAQGAIKILIC----TNI 553 (835)
Q Consensus 479 ~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~-~lHG~m~~~ere~vl~~F~~g~~~VLVa----T~i 553 (835)
..+...+.. .+++++||||+++.++.++..|... ++.+. .+||+ |.+ ++.|++|+.+|||| |++
T Consensus 299 ~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~--g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 299 EKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF--KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp HHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT--TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred HHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC--CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 344444443 4689999999999999999999998 88998 99993 455 99999999999999 999
Q ss_pred CccCCCCCC-cCEEEEecCCC
Q 003268 554 VESGLDIQN-ANTIIVQDVQQ 573 (835)
Q Consensus 554 ie~GIDIp~-v~~VIi~d~p~ 573 (835)
+++|||+|+ |++||++|+|.
T Consensus 368 larGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCE
T ss_pred eEecCcCCCCCCEEEEECCCC
Confidence 999999999 99999999997
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.7e-38 Score=362.61 Aligned_cols=311 Identities=20% Similarity=0.250 Sum_probs=204.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-----CCEEEEEcccHHHHHHHHHHHHH
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-----g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+++|+|+|.+|++.++. ++++++++|||+|||++|+.+++..+.. +.+++|++||++|+.|+++.+..
T Consensus 2 ~~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhC-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 68999999999999864 4689999999999999999999887765 77899999999999999999998
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----c-ccccccEEEeccccccchhh-H-H--
Q 003268 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ-K-E-- 423 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l-~~~~l~lVIIDEaHr~g~~~-~-e-- 423 (835)
.+... ++++..++|+.+...... .+.. .++|+|+||+.|... + .+.++++|||||||++.... . .
T Consensus 75 ~~~~~-~~~~~~~~g~~~~~~~~~---~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~ 149 (555)
T 3tbk_A 75 YFERL-GYNIASISGATSDSVSVQ---HIIE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIM 149 (555)
T ss_dssp HHHTT-TCCEEEECTTTGGGSCHH---HHHH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHH
T ss_pred HhccC-CcEEEEEcCCCcchhhHH---HHhc-CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHH
Confidence 66554 789999999876544322 2222 389999999988642 3 56789999999999974321 1 1
Q ss_pred --HHHhh-----cCCceEEEeecCCChhh-------HH--HHHhcCCCcceeeCCCCC--------ccceeEEe-cc---
Q 003268 424 --KIASF-----KISVDVLTLSATPIPRT-------LY--LALTGFRDASLISTPPPE--------RLPIKTHL-SA--- 475 (835)
Q Consensus 424 --~l~~~-----~~~~~vL~lSATp~p~t-------l~--~~~~~~~d~s~i~~~p~~--------r~~V~~~~-~~--- 475 (835)
.+... ....++++|||||.... .. ..+....+...+...... ..+..... ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 229 (555)
T 3tbk_A 150 FRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRT 229 (555)
T ss_dssp HHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCS
T ss_pred HHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcc
Confidence 11111 25578999999995421 00 011111222222211100 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 003268 476 -------------------------------------------------------------------------------- 475 (835)
Q Consensus 476 -------------------------------------------------------------------------------- 475 (835)
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 309 (555)
T 3tbk_A 230 SNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRK 309 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------------c-CHHHHHHHHHHHH--hcC
Q 003268 476 ------------------------------------------------------------F-SKEKVISAIKYEL--DRG 492 (835)
Q Consensus 476 ------------------------------------------------------------~-~~~~~~~~i~~~l--~~g 492 (835)
. ....+.+.+.... ..+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 389 (555)
T 3tbk_A 310 YNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPE 389 (555)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCC
Confidence 0 0001111222222 234
Q ss_pred CeEEEEecCccChHHHHHHHHhhC----------CCCcEEEEcCCCCHHHHHHHHHHhhc-CCeeEEEECCcCccCCCCC
Q 003268 493 GQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 493 gqvlVf~~~v~~ie~l~~~L~~~~----------p~~~V~~lHG~m~~~ere~vl~~F~~-g~~~VLVaT~iie~GIDIp 561 (835)
++++|||+++..++.+++.|.... .|.....+||+|++.+|++++++|++ |+++|||||+++++|||+|
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp 469 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIA 469 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETT
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccc
Confidence 899999999999999999998751 13345556679999999999999999 9999999999999999999
Q ss_pred CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
++++||++|+|. ++.+|+||+|| ||. +.|.||+|+++.+.
T Consensus 470 ~v~~VI~~d~p~-s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 470 ECNLVILYEYVG-NVIKMIQTRGR-GRA-RDSKCFLLTSSADV 509 (555)
T ss_dssp SCSEEEEESCCS-SCCCEECSSCC-CTT-TSCEEEEEESCHHH
T ss_pred cCCEEEEeCCCC-CHHHHHHhcCc-CcC-CCceEEEEEcCCCH
Confidence 999999999994 99999999999 998 89999999987643
No 29
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.1e-38 Score=386.72 Aligned_cols=409 Identities=17% Similarity=0.201 Sum_probs=281.2
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH-HhC--CCEEEEEcc
Q 003268 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSA--GKQAMVLAP 339 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~-~~~--g~qvlVLvP 339 (835)
.++.++ +.+.+...+ ..|++.|+++|..++.+ +.+++++||||||||++.-..+... ... +.+++|++|
T Consensus 76 ~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P 148 (773)
T 2xau_A 76 GREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQP 148 (773)
T ss_dssp CSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEES
T ss_pred ccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCc
Confidence 345555 666666666 68899999999988752 4689999999999999432222222 122 678999999
Q ss_pred cHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc----ccccccccEEEecccc
Q 003268 340 TIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 340 tr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaH 415 (835)
+++|+.|+++++...++...+..+++..++... .....+|+++|++.+.+ ...+.++++|||||+|
T Consensus 149 ~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~----------~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 149 RRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK----------TSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAH 218 (773)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE----------CCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGG
T ss_pred hHHHHHHHHHHHHHHhCCchhheecceeccccc----------cCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCcc
Confidence 999999999998876654334455544333211 12458999999998764 3457899999999999
Q ss_pred ccch------hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHH----HHHHHH
Q 003268 416 RFGV------KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKE----KVISAI 485 (835)
Q Consensus 416 r~g~------~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~----~~~~~i 485 (835)
..+. .....+....++.++|+||||+.+..+. ..+.+..++..+ ....++..++...... .....+
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~---~~~~~~~vi~v~-gr~~pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ---RYFNDAPLLAVP-GRTYPVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH---HHTTSCCEEECC-CCCCCEEEECCSSCCSCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH---HHhcCCCccccc-CcccceEEEEecCCchhHHHHHHHHH
Confidence 6222 2234444556788999999999765432 233445555543 4456777665443321 223333
Q ss_pred HHHHh--cCCeEEEEecCccChHHHHHHHHhh---------CCCCcEEEEcCCCCHHHHHHHHHHhh-----cCCeeEEE
Q 003268 486 KYELD--RGGQVFYVLPRIKGLEEPMDFLQQA---------FPGVDIAIAHGQQYSRQLEETMEKFA-----QGAIKILI 549 (835)
Q Consensus 486 ~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~---------~p~~~V~~lHG~m~~~ere~vl~~F~-----~g~~~VLV 549 (835)
..... .++++||||+++++++.+++.|.+. .+++.+.++||+|++.+|+.+++.|. +|.++|||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV 374 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI 374 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE
Confidence 33332 4799999999999999999999751 25788999999999999999999999 99999999
Q ss_pred ECCcCccCCCCCCcCEEEEecC------------------CCCCHhHHHHHhcccCCCCCceEEEEEecCCCcCCHHHHH
Q 003268 550 CTNIVESGLDIQNANTIIVQDV------------------QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALE 611 (835)
Q Consensus 550 aT~iie~GIDIp~v~~VIi~d~------------------p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~~~~~a~~ 611 (835)
||+++++|||||++++||+++. | .+.++|.||+|||||. ..|.||+|+++.+........
T Consensus 375 AT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p-~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~~~~l~~~ 452 (773)
T 2xau_A 375 STNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSP-ISKASAQQRAGRAGRT-RPGKCFRLYTEEAFQKELIEQ 452 (773)
T ss_dssp ECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEE-CCHHHHHHHHHGGGSS-SSEEEEESSCHHHHHHTSCSS
T ss_pred eCcHHHhCcCcCCeEEEEeCCCccceeeccccCcccccccc-CCHHHHHhhccccCCC-CCCEEEEEecHHHhccccccc
Confidence 9999999999999999999776 5 3889999999999999 899999999754320000000
Q ss_pred HHHHHHHHhhcccchhhhhhhhccccCCCcccccccCCcccchHHHHHHHHHHHHHhhcCcccccccCcceEEeeecCCC
Q 003268 612 RLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGVDLFFEMLFESLSKVDEHCVISVPYKSVQIDININPR 691 (835)
Q Consensus 612 rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~i~~vg~~~y~~~L~~ai~~l~~~~~~~~~~g~~~~~l~idp~ 691 (835)
..++|.+.+. .+..+.++.+ |.+++........+....+....+.|. .+..++.+. ..|++|..++.+|+||.
T Consensus 453 ~~pEi~r~~L--~~~~L~l~~~---gi~~~~~f~~~~~p~~~~i~~a~~~L~-~lgald~~~-~lT~lG~~~a~~pl~p~ 525 (773)
T 2xau_A 453 SYPEILRSNL--SSTVLELKKL---GIDDLVHFDFMDPPAPETMMRALEELN-YLACLDDEG-NLTPLGRLASQFPLDPM 525 (773)
T ss_dssp CCCGGGGSCC--HHHHHHHHHT---TCCCGGGCCCSSCCCHHHHHHHHHHHH-HTTSBCTTS-CBCHHHHHHTTSSSCHH
T ss_pred CCCccccCcH--HHHHHHHHHc---CCCChhhccccCCCcHHHHHHHHHHHH-HcCCcccCC-CcChhhhhhccccCCHH
Confidence 0111211111 2233333333 555555555444443334444444444 344444332 36789999999999999
Q ss_pred CccccccccCC
Q 003268 692 LPSEYINHLEN 702 (835)
Q Consensus 692 ~~~~~i~~~~~ 702 (835)
+++.++.+...
T Consensus 526 ~~~~l~~~~~~ 536 (773)
T 2xau_A 526 LAVMLIGSFEF 536 (773)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHhhccc
Confidence 99998877554
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-37 Score=381.95 Aligned_cols=303 Identities=20% Similarity=0.195 Sum_probs=228.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHh
Q 003268 275 AAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 275 ~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
...++|+|+|+|.+|++.+.+ ++++|+++|||||||++|..++...+..+.+++|++||++|+.|++++|...
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~-------g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHH-------TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHH
Confidence 467899999999999999865 4789999999999999999999988888999999999999999999999987
Q ss_pred hcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccch-----hhHHH
Q 003268 355 FSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGV-----KQKEK 424 (835)
Q Consensus 355 f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g~-----~~~e~ 424 (835)
|+ ++++++|+.+.. ..++|+|+||+.|.+ ...+.++++|||||+|+++. .....
T Consensus 153 ~~-----~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 153 FG-----DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp HS-----CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred hC-----CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 64 678888875432 248999999987753 24578999999999998743 23344
Q ss_pred HHhhcCCceEEEeecCCChhhH-HHHHh-cCC-CcceeeCCCCCccceeEEecccC------------------------
Q 003268 425 IASFKISVDVLTLSATPIPRTL-YLALT-GFR-DASLISTPPPERLPIKTHLSAFS------------------------ 477 (835)
Q Consensus 425 l~~~~~~~~vL~lSATp~p~tl-~~~~~-~~~-d~s~i~~~p~~r~~V~~~~~~~~------------------------ 477 (835)
+..++.+.++|+||||++.... ...+. ... ...++.. +....++..++....
T Consensus 217 l~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT-NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA 295 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEE-CCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec-CCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH
Confidence 5666788999999999754321 11111 111 2222221 122223322221100
Q ss_pred --------------------------------HHHHHHHHHHHHhc-CCeEEEEecCccChHHHHHHHHhhC-C------
Q 003268 478 --------------------------------KEKVISAIKYELDR-GGQVFYVLPRIKGLEEPMDFLQQAF-P------ 517 (835)
Q Consensus 478 --------------------------------~~~~~~~i~~~l~~-ggqvlVf~~~v~~ie~l~~~L~~~~-p------ 517 (835)
...+...+...... .++++|||+++..++.++..|.... .
T Consensus 296 ~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 296 SISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp TCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 01111222222233 3589999999999999988876520 0
Q ss_pred ------------------------------CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEE
Q 003268 518 ------------------------------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTII 567 (835)
Q Consensus 518 ------------------------------~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VI 567 (835)
...|+++||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 12389999999999999999999999999999999999999999999999
Q ss_pred E----ecC----CCCCHhHHHHHhcccCCCCC--ceEEEEEecCC
Q 003268 568 V----QDV----QQFGLAQLYQLRGRVGRADK--EAHAYLFYPDK 602 (835)
Q Consensus 568 i----~d~----p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~ 602 (835)
+ ||. | ++..+|+||+|||||.|. .|.||+++++.
T Consensus 456 ~~~~kfd~~~~rp-~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRW-VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEE-CCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCcc-CCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 8 887 4 489999999999999995 59999999865
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.4e-37 Score=345.01 Aligned_cols=307 Identities=20% Similarity=0.274 Sum_probs=227.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
++|+|+|.++++.++. + ++++++|||+|||++++.++...+. .+.+++|++|+++|+.|+++++.+.+ ..
T Consensus 8 ~~l~~~Q~~~i~~~~~-------~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~-~~ 78 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE-------T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF-NL 78 (494)
T ss_dssp HCCCHHHHHHHHHGGG-------S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB-CS
T ss_pred CCccHHHHHHHHHHhh-------C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHh-Cc
Confidence 5899999999998764 2 7999999999999999988876654 67899999999999999999999754 33
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccccchh-----hHHHHHhh
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQRFGVK-----QKEKIASF 428 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr~g~~-----~~e~l~~~ 428 (835)
++.++..++|.....+....+. ..+|+|+||+.|.. .+.+.++++||+||||++... ....+...
T Consensus 79 ~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~ 153 (494)
T 1wp9_A 79 PPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ 153 (494)
T ss_dssp CGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred chhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhc
Confidence 4568999999887765444332 47999999998864 345788999999999997421 12233444
Q ss_pred cCCceEEEeecCCChh--hHHHHHhcCC--CcceeeCCCCC------ccceeEEec------------------------
Q 003268 429 KISVDVLTLSATPIPR--TLYLALTGFR--DASLISTPPPE------RLPIKTHLS------------------------ 474 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~--tl~~~~~~~~--d~s~i~~~p~~------r~~V~~~~~------------------------ 474 (835)
.+..++++|||||... ........+. ........... .........
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999722 2222221111 10000000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 003268 475 -------------------------------------------------------------------------------- 474 (835)
Q Consensus 475 -------------------------------------------------------------------------------- 474 (835)
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence
Q ss_pred --------------------------ccC--HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 003268 475 --------------------------AFS--KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 475 --------------------------~~~--~~~~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~l 524 (835)
..+ ...+.+.+.... ..+++++|||+++..++.+++.|... ++.+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~--~~~~~~~ 391 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD--GIKAKRF 391 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT--TCCEEEE
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc--CCCcEEE
Confidence 000 011122222222 35789999999999999999999998 8899999
Q ss_pred cC--------CCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEE
Q 003268 525 HG--------QQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAY 596 (835)
Q Consensus 525 HG--------~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay 596 (835)
|| +|+..+|+++++.|++|+.+|||||+++++|+|+|++++||+++.+ +++..|.||+||+||.|. |.+|
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~-~~~~~~~Qr~GR~~R~g~-g~~~ 469 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV-PSAIRSIQRRGRTGRHMP-GRVI 469 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCC-HHHHHHHHHHTTSCSCCC-SEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCC-CCHHHHHHHHhhccCCCC-ceEE
Confidence 99 9999999999999999999999999999999999999999999998 599999999999999987 9999
Q ss_pred EEecCCCc
Q 003268 597 LFYPDKSL 604 (835)
Q Consensus 597 ~l~~~~~~ 604 (835)
.|+++.+.
T Consensus 470 ~l~~~~t~ 477 (494)
T 1wp9_A 470 ILMAKGTR 477 (494)
T ss_dssp EEEETTSH
T ss_pred EEEecCCH
Confidence 99998754
No 32
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.3e-37 Score=354.26 Aligned_cols=295 Identities=21% Similarity=0.227 Sum_probs=208.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHH-HHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~-~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
++++|++||||||||++|+++++ ..+..+.+++|++||++||.|+++.+. ++.+.+.++....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--------- 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--------- 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc---------
Confidence 57899999999999999988888 556778899999999999999987764 3567776664221
Q ss_pred HhcCCcceEecchHhhh----cccccccccEEEeccccccc---hhhHHHHHhh--cCCceEEEeecCCChhhHHHHHhc
Q 003268 382 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFG---VKQKEKIASF--KISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~----~~l~~~~l~lVIIDEaHr~g---~~~~e~l~~~--~~~~~vL~lSATp~p~tl~~~~~~ 452 (835)
.......+.+.|++.+. ....+.++++|||||+|+++ ..+...+... ..+.++|+|||||++....+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~---- 141 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF---- 141 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS----
T ss_pred cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh----
Confidence 11222345566766443 34558999999999999996 3445555544 46899999999998742211
Q ss_pred CCCcceeeCCCCCccceeEEeccc---CHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCC
Q 003268 453 FRDASLISTPPPERLPIKTHLSAF---SKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQY 529 (835)
Q Consensus 453 ~~d~s~i~~~p~~r~~V~~~~~~~---~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~ 529 (835)
+..+.++....... ....+.+.+. ..+++++||||++++++.+++.|+.. ++.+..+||+
T Consensus 142 ----------~~~~~~i~~~~~~~~~~~~~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 ----------PPSNSPIIDEETRIPDKAWNSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQKA--GKKVLYLNRK-- 204 (431)
T ss_dssp ----------CCCSSCCEEEECCCCSSCCSSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHHT--TCCEEEESTT--
T ss_pred ----------cCCCCceeeccccCCHHHHHHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHHc--CCeEEEeCCc--
Confidence 11122222211111 1111222222 24789999999999999999999998 8999999997
Q ss_pred HHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCE-----------------EEEecCCCCCHhHHHHHhcccCCCCCc
Q 003268 530 SRQLEETMEKFAQGAIKILICTNIVESGLDIQNANT-----------------IIVQDVQQFGLAQLYQLRGRVGRADKE 592 (835)
Q Consensus 530 ~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~-----------------VIi~d~p~~sl~~l~Qr~GRaGR~g~~ 592 (835)
+|++++++|++|+.+|||||+++++|||+| +.+ ||+++.| +++++|+||+||+||.|..
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p-~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIA-ITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEE-CCHHHHHHHHTTSSCCTTC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeeccccc-CCHHHHHHhhhccCCCCCC
Confidence 578899999999999999999999999999 655 4556666 5999999999999999855
Q ss_pred eEEEEEec-CCCcCC------HHHHHHHHHHHHHhhcccchhh----hhhhhccccCCCcc
Q 003268 593 AHAYLFYP-DKSLLS------DQALERLAALEECRELGQGFQL----AEKDMGIRGFGTIF 642 (835)
Q Consensus 593 G~ay~l~~-~~~~~~------~~a~~rl~~i~~~~~l~sg~~l----a~~dL~irG~g~~l 642 (835)
+.|++++. +..... ..+..|+..+ ...+||.+ +.+|+.+++.|+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~ 337 (431)
T 2v6i_A 281 LGDIYAYSGNVSSDNEGHVSWTEARMLLDNV----HVQGGVVAQLYTPEREKTEAYEGEFK 337 (431)
T ss_dssp CCCEEEECSCCCCCCTTBHHHHHHHHHHTTC----CCTTSCCCCCCGGGGGGCCCCTTTTC
T ss_pred CCeEEEEcCCCCCccchhHHHHHHHHHHhhc----CCCCCcceeccchhhhccCCCCCcee
Confidence 54444443 221111 1344555554 34578988 78899999988763
No 33
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5.2e-36 Score=371.74 Aligned_cols=407 Identities=17% Similarity=0.204 Sum_probs=269.0
Q ss_pred CCCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCC-CcccChhhhhHHhhhccCCCCCCchHHHhhccCCc
Q 003268 152 YSLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADG-MAKLPVKQASRMLYRYNLPNETKRPRTLSKLSDTT 230 (835)
Q Consensus 152 ~~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l~~~~ 230 (835)
.++++||+|+|.+ |++.++...... +....|+. .|.++ ..++++.+. .+.++|.. ....+++.. .
T Consensus 53 ~~~~~gd~v~~~~---g~~~~v~~~~~~--~g~~~y~~-~~~~~~~~~~~~~e~-~l~~~~~~------~~~~~rl~~-~ 118 (968)
T 3dmq_A 53 VMFNPGDTITSHD---GWQMQVEEVKEE--NGLLTYIG-TRLDTEESGVALREV-FLDSKLVF------SKPQDRLFA-G 118 (968)
T ss_dssp CCCCTTCEEEBTT---SCEEEEEEEECS--SSCCEEEE-EETTTCCCSEEEEGG-GBCSSCCC------CCHHHHTTC-S
T ss_pred EEcCCCCEEEcCC---CcEEEEEEEEec--CCcEEEEE-eccCCCcccccccHh-hhcccccc------CCHHHHHhh-c
Confidence 4899999999988 788887632211 34567874 45444 455666664 33444432 134666753 5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEc
Q 003268 231 AWERRKTKGKVAIQKMVVDLMELYLHRLKQKRPPYPKNPAIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICG 310 (835)
Q Consensus 231 ~w~~~~~~~~~~~~~~~~~l~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g 310 (835)
.|...... +...+.+..+..+.......+. ...++|+|+|.+++..++... ++++|+++
T Consensus 119 ~~~~~~~~------~l~~~~~~~~~~~~~~~~~~l~----------~~~~~LrpyQ~eav~~~l~~~-----~~~~LLad 177 (968)
T 3dmq_A 119 QIDRMDRF------ALRYRARKYSSEQFRMPYSGLR----------GQRTSLIPHQLNIAHDVGRRH-----APRVLLAD 177 (968)
T ss_dssp SCCCHHHH------TTHHHHHHHHHHHHTCSSCSSS----------CCSSCCCHHHHHHHHHHHHSS-----SCEEEECC
T ss_pred CCCCchHH------HHHHHHHHHHHHhhcCcccccc----------CCCCCCcHHHHHHHHHHHHhc-----CCCEEEEC
Confidence 56544331 1112234444444333332221 234799999999999987632 46899999
Q ss_pred cCCCccHHHHHHHHHHHHhCCC--EEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcc
Q 003268 311 DVGFGKTEVALRAIFCVVSAGK--QAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN 388 (835)
Q Consensus 311 ~TGsGKT~val~a~~~~~~~g~--qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~d 388 (835)
+||+|||.+++.++...+..++ ++|||||+ .|+.||..++..+| ++.+.++++....... ....-.....+
T Consensus 178 ~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~~~~~~~~~--~~~~~~~~~~d 250 (968)
T 3dmq_A 178 EVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF----NLRFALFDDERYAEAQ--HDAYNPFDTEQ 250 (968)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS----CCCCEECCHHHHHHHH--HTTCSSSTTCS
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh----CCCEEEEccchhhhhh--hhcccccccCC
Confidence 9999999999888887776665 99999999 99999999998777 3556666553211100 00001112579
Q ss_pred eEecchHhhhcc------cccccccEEEeccccccchhh------HHHHHhhc-CCceEEEeecCCChhhHH----H---
Q 003268 389 IIVGTHSLLGSR------VVYNNLGLLVVDEEQRFGVKQ------KEKIASFK-ISVDVLTLSATPIPRTLY----L--- 448 (835)
Q Consensus 389 IIIgT~~~L~~~------l~~~~l~lVIIDEaHr~g~~~------~e~l~~~~-~~~~vL~lSATp~p~tl~----~--- 448 (835)
|+|+|++.+... +...++++|||||||++.... ...+..+. ...++++|||||.+.... +
T Consensus 251 IvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~ 330 (968)
T 3dmq_A 251 LVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRL 330 (968)
T ss_dssp EEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHH
T ss_pred EEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHh
Confidence 999999998643 345689999999999985322 23444443 445799999999752210 0
Q ss_pred ------------------------HHhcCCCcc------------ee----------eCCC-------------------
Q 003268 449 ------------------------ALTGFRDAS------------LI----------STPP------------------- 463 (835)
Q Consensus 449 ------------------------~~~~~~d~s------------~i----------~~~p------------------- 463 (835)
....+.+.. .+ ...+
T Consensus 331 L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~ 410 (968)
T 3dmq_A 331 LDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDR 410 (968)
T ss_dssp HCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGG
T ss_pred cCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHh
Confidence 000000000 00 0000
Q ss_pred ---------CCccceeE--------Eec---------------------------------------------ccCHHHH
Q 003268 464 ---------PERLPIKT--------HLS---------------------------------------------AFSKEKV 481 (835)
Q Consensus 464 ---------~~r~~V~~--------~~~---------------------------------------------~~~~~~~ 481 (835)
..+..+.. ... .......
T Consensus 411 ~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K 490 (968)
T 3dmq_A 411 HGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPR 490 (968)
T ss_dssp CTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHH
T ss_pred hCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHH
Confidence 00000000 000 0001112
Q ss_pred HHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCC--eeEEEECCcCccC
Q 003268 482 ISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGA--IKILICTNIVESG 557 (835)
Q Consensus 482 ~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~--~~VLVaT~iie~G 557 (835)
...+.+.+ ..+++++|||+++..++.+++.|.... ++.+..+||+|++.+|+.+++.|++|+ ++|||||+++++|
T Consensus 491 ~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~-g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~G 569 (968)
T 3dmq_A 491 VEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE-GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEG 569 (968)
T ss_dssp HHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT-CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCS
T ss_pred HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcC
Confidence 33333333 357899999999999999999999643 889999999999999999999999998 9999999999999
Q ss_pred CCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEE--ecCC
Q 003268 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLF--YPDK 602 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l--~~~~ 602 (835)
+|+|++++||++|+| |++.+|+|++||+||.|+.|.|+++ +...
T Consensus 570 lDl~~~~~VI~~d~p-~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 570 RNFQFASHMVMFDLP-FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp SCCTTCCEEECSSCC-SSHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred CCcccCcEEEEecCC-CCHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 999999999999999 6999999999999999988755544 4444
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.5e-36 Score=374.57 Aligned_cols=306 Identities=24% Similarity=0.303 Sum_probs=230.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.+...++|+|+|+|.+||+.+++ ++++++++|||||||++|+.++......+.+++|++||++|+.|++++++
T Consensus 31 ~~~~~~~f~l~~~Q~~aI~~il~-------g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~ 103 (997)
T 4a4z_A 31 NPARSWPFELDTFQKEAVYHLEQ-------GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFK 103 (997)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHT-------TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHH
T ss_pred hHHHhCCCCCCHHHHHHHHHHHc-------CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 44567899999999999999864 47999999999999999999998888889999999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----cccccccEEEecccccc-----chhhH
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----VVYNNLGLLVVDEEQRF-----GVKQK 422 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l~~~~l~lVIIDEaHr~-----g~~~~ 422 (835)
+.|. +++++.++|+.+. ++.++|+|+||+.|.+. ..+.++++|||||+|++ +....
T Consensus 104 ~~~~---~~~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e 169 (997)
T 4a4z_A 104 ETFD---DVNIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWE 169 (997)
T ss_dssp TTC-----CCEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHH
T ss_pred HHcC---CCeEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHH
Confidence 8653 5789999997642 24689999999988542 34688999999999986 33445
Q ss_pred HHHHhhcCCceEEEeecCCChhhHHHHHhc---CCCcceeeCCCCCccceeEEecc-------------c----------
Q 003268 423 EKIASFKISVDVLTLSATPIPRTLYLALTG---FRDASLISTPPPERLPIKTHLSA-------------F---------- 476 (835)
Q Consensus 423 e~l~~~~~~~~vL~lSATp~p~tl~~~~~~---~~d~s~i~~~p~~r~~V~~~~~~-------------~---------- 476 (835)
+.+..++.+.++|+||||++.......+.+ ..+..++.+ +....|+..++.. +
T Consensus 170 ~ii~~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~-~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (997)
T 4a4z_A 170 EVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVIST-PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKE 248 (997)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEEC-SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHH
T ss_pred HHHHhcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEec-CCCCccceEEEecCCcchhcccchhhhhHHHHHHHHH
Confidence 566777788999999999854332111111 122222222 2222333222110 0
Q ss_pred ----------------------------------------------------------------------CHHHHHHHHH
Q 003268 477 ----------------------------------------------------------------------SKEKVISAIK 486 (835)
Q Consensus 477 ----------------------------------------------------------------------~~~~~~~~i~ 486 (835)
........+.
T Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 328 (997)
T 4a4z_A 249 ILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIV 328 (997)
T ss_dssp HHC-----------------------------------------------------------------CCCCTTHHHHHH
T ss_pred HhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 0001123333
Q ss_pred HHHhc--CCeEEEEecCccChHHHHHHHHhhCC-------------------------------------CCcEEEEcCC
Q 003268 487 YELDR--GGQVFYVLPRIKGLEEPMDFLQQAFP-------------------------------------GVDIAIAHGQ 527 (835)
Q Consensus 487 ~~l~~--ggqvlVf~~~v~~ie~l~~~L~~~~p-------------------------------------~~~V~~lHG~ 527 (835)
..+.. .++++|||++++.++.++..|....- ..+|.++||+
T Consensus 329 ~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 329 NYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp HHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 44433 36999999999999999988865310 2268999999
Q ss_pred CCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC--------CHhHHHHHhcccCCCC--CceEEEE
Q 003268 528 QYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF--------GLAQLYQLRGRVGRAD--KEAHAYL 597 (835)
Q Consensus 528 m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~--------sl~~l~Qr~GRaGR~g--~~G~ay~ 597 (835)
|++.+|+.+++.|.+|.++|||||+++++|||+|+ .+||+.+.+.| +..+|+||+|||||.| ..|.||+
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999998 66776555543 7899999999999988 6799999
Q ss_pred EecC
Q 003268 598 FYPD 601 (835)
Q Consensus 598 l~~~ 601 (835)
++..
T Consensus 488 l~~~ 491 (997)
T 4a4z_A 488 MAYN 491 (997)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 9853
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=6e-37 Score=367.50 Aligned_cols=315 Identities=20% Similarity=0.233 Sum_probs=191.5
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC-----CEEEEEcccHHHHHHHH
Q 003268 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-----KQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 274 ~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g-----~qvlVLvPtr~La~Q~~ 348 (835)
+...+...|+|+|.++++.++. ++|+|+++|||+|||++|+.+++..+..+ .+++|++||++|+.|++
T Consensus 6 l~~~g~~~lr~~Q~~~i~~~l~-------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 6 TNLYSPFKPRNYQLELALPAMK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp -CTTC--CCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred ccccCCCCccHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 3345566999999999999874 47899999999999999999998766432 78999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----c-ccccccEEEeccccccchhh-
Q 003268 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ- 421 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l-~~~~l~lVIIDEaHr~g~~~- 421 (835)
+.+...+. ..++++..++|+.+..... ..+.. .++|+|+||+.|.+. + .+.++++|||||||++....
T Consensus 79 ~~~~~~~~-~~~~~v~~~~g~~~~~~~~---~~~~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~ 153 (696)
T 2ykg_A 79 SVFSKYFE-RHGYRVTGISGATAENVPV---EQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP 153 (696)
T ss_dssp HHHHHHTT-TTTCCEEEECSSSCSSSCH---HHHHH-TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH
T ss_pred HHHHHHhc-cCCceEEEEeCCccccccH---HHhcc-CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc
Confidence 99998554 3478999999987543322 22223 389999999988642 3 57789999999999963211
Q ss_pred H-H----HHHh-----hcCCceEEEeecCCC-------hhhHHHHHh--cCCCcceeeCCCC------------------
Q 003268 422 K-E----KIAS-----FKISVDVLTLSATPI-------PRTLYLALT--GFRDASLISTPPP------------------ 464 (835)
Q Consensus 422 ~-e----~l~~-----~~~~~~vL~lSATp~-------p~tl~~~~~--~~~d~s~i~~~p~------------------ 464 (835)
. . .+.. .....++|+|||||. ......... ...+...+.....
T Consensus 154 ~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~ 233 (696)
T 2ykg_A 154 YNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 233 (696)
T ss_dssp HHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEE
T ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEe
Confidence 1 1 1111 135689999999996 221111110 0011111111000
Q ss_pred --Ccc---------------------------------------------------------------------------
Q 003268 465 --ERL--------------------------------------------------------------------------- 467 (835)
Q Consensus 465 --~r~--------------------------------------------------------------------------- 467 (835)
.+.
T Consensus 234 ~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 313 (696)
T 2ykg_A 234 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 313 (696)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHH
T ss_pred cCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Confidence 000
Q ss_pred --------------------------------------ceeEEec-------------------ccC-HHHHHHHHHHHH
Q 003268 468 --------------------------------------PIKTHLS-------------------AFS-KEKVISAIKYEL 489 (835)
Q Consensus 468 --------------------------------------~V~~~~~-------------------~~~-~~~~~~~i~~~l 489 (835)
.+...+. ... ...+.+.+....
T Consensus 314 ~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~ 393 (696)
T 2ykg_A 314 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 393 (696)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 0000000 000 011112222221
Q ss_pred --hcCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEE--------cCCCCHHHHHHHHHHhhc-CCeeEEEECCcCcc
Q 003268 490 --DRGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIA--------HGQQYSRQLEETMEKFAQ-GAIKILICTNIVES 556 (835)
Q Consensus 490 --~~ggqvlVf~~~v~~ie~l~~~L~~~~--p~~~V~~l--------HG~m~~~ere~vl~~F~~-g~~~VLVaT~iie~ 556 (835)
..+++++|||+++..++.+++.|.... +++.+..+ ||+|++.+|++++++|++ |+++|||||+++++
T Consensus 394 ~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~ 473 (696)
T 2ykg_A 394 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 473 (696)
T ss_dssp TTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCC
T ss_pred ccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhc
Confidence 246799999999999999999999861 22777777 569999999999999998 99999999999999
Q ss_pred CCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 557 GLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|||+|++++||++|+|. ++.+|+||+|| ||. +.|.||++++..+
T Consensus 474 GiDip~v~~VI~~d~p~-s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~ 517 (696)
T 2ykg_A 474 GIDIAQCNLVILYEYVG-NVIKMIQTRGR-GRA-RGSKCFLLTSNAG 517 (696)
T ss_dssp C---CCCSEEEEESCC---CCCC-----------CCCEEEEEESCHH
T ss_pred CCcCccCCEEEEeCCCC-CHHHHHHhhcc-CcC-CCceEEEEecCCC
Confidence 99999999999999995 99999999999 998 7899999998764
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.8e-37 Score=367.16 Aligned_cols=309 Identities=21% Similarity=0.207 Sum_probs=210.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC------CEEEEEcccHHHHHHH-HHHH
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTIVLAKQH-FDVV 351 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g------~qvlVLvPtr~La~Q~-~~~~ 351 (835)
+++|+|+|.+|++.+++ ++++|+++|||+|||++|+.++...+..+ ++++|++|+++|+.|+ ++++
T Consensus 5 ~~~l~~~Q~~~i~~il~-------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE-------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp --CCCHHHHHHHHHHHS-------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCCccHHHHHHHHHHHh-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 57899999999999874 46899999999999999999998765432 7899999999999999 9999
Q ss_pred HHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc-----------ccccccEEEeccccccchh
Q 003268 352 SERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV-----------VYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 352 ~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l-----------~~~~l~lVIIDEaHr~g~~ 420 (835)
+..+.. ++++..++|+.+..+....+ . +.++|+|+||+.|.+.+ .+.++++|||||||++...
T Consensus 78 ~~~~~~--~~~v~~~~g~~~~~~~~~~~---~-~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~ 151 (699)
T 4gl2_A 78 QPFLKK--WYRVIGLSGDTQLKISFPEV---V-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 151 (699)
T ss_dssp HHHHTT--TSCEEEEC----CCCCHHHH---H-HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTT
T ss_pred HHHcCc--CceEEEEeCCcchhhHHHhh---h-cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCcc
Confidence 986543 38899999976554332222 2 45899999999887533 5678999999999986321
Q ss_pred -----hHH-H----HHhhc---------CCceEEEeecCCChh-------hHH--HHHhcCCCcceeeCCCCC-------
Q 003268 421 -----QKE-K----IASFK---------ISVDVLTLSATPIPR-------TLY--LALTGFRDASLISTPPPE------- 465 (835)
Q Consensus 421 -----~~e-~----l~~~~---------~~~~vL~lSATp~p~-------tl~--~~~~~~~d~s~i~~~p~~------- 465 (835)
... . +.... +..++|+|||||... ... ..+....+...+......
T Consensus 152 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~ 231 (699)
T 4gl2_A 152 AVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQ 231 (699)
T ss_dssp BSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHH
T ss_pred chHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhh
Confidence 111 1 11122 667899999999762 111 111111111111111000
Q ss_pred -ccceeEEec-c--------------------------------------------------------------------
Q 003268 466 -RLPIKTHLS-A-------------------------------------------------------------------- 475 (835)
Q Consensus 466 -r~~V~~~~~-~-------------------------------------------------------------------- 475 (835)
..|...+.. .
T Consensus 232 ~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (699)
T 4gl2_A 232 IQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEAL 311 (699)
T ss_dssp SCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 000000000 0
Q ss_pred ---------------------------------------c------------------------------CHHHHHHHHH
Q 003268 476 ---------------------------------------F------------------------------SKEKVISAIK 486 (835)
Q Consensus 476 ---------------------------------------~------------------------------~~~~~~~~i~ 486 (835)
. ....+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~ 391 (699)
T 4gl2_A 312 QINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIM 391 (699)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 0 0000111222
Q ss_pred HHHhc---CCeEEEEecCccChHHHHHHHHhh----CCCCcEEEEcCC--------CCHHHHHHHHHHhhcCCeeEEEEC
Q 003268 487 YELDR---GGQVFYVLPRIKGLEEPMDFLQQA----FPGVDIAIAHGQ--------QYSRQLEETMEKFAQGAIKILICT 551 (835)
Q Consensus 487 ~~l~~---ggqvlVf~~~v~~ie~l~~~L~~~----~p~~~V~~lHG~--------m~~~ere~vl~~F~~g~~~VLVaT 551 (835)
..... ++++||||++++.++.+++.|... ..++.+..+||+ |++.+|.+++++|++|+++|||||
T Consensus 392 ~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT 471 (699)
T 4gl2_A 392 EQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT 471 (699)
T ss_dssp HHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE
T ss_pred HHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc
Confidence 22222 789999999999999999999875 126889999999 999999999999999999999999
Q ss_pred CcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 552 NIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 552 ~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++++|||+|++++||++|+|. ++.+|+||+|||||.| +.++++++.+.
T Consensus 472 ~~~~~GIDip~v~~VI~~d~p~-s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 472 TVAEEGLDIKECNIVIRYGLVT-NEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CSCCTTSCCCSCCCCEEESCCC-CHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred cccccCCccccCCEEEEeCCCC-CHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 9999999999999999999995 9999999999988765 44555555443
No 37
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.3e-36 Score=366.42 Aligned_cols=310 Identities=17% Similarity=0.192 Sum_probs=184.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-----CCEEEEEcccHHHHHHHHHHHH
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-----g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+++.|+|+|.+|++.++. ++++|+++|||+|||++|+.+++..+.. +++++|++||++|+.|++++|+
T Consensus 245 g~~~l~~~Q~~~i~~~l~-------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp ---CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-------CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 466999999999999864 4689999999999999999999888765 7899999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----c-ccccccEEEeccccccchhh--HHH
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ--KEK 424 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l-~~~~l~lVIIDEaHr~g~~~--~e~ 424 (835)
..+... ++++..++|+.+..... ..+.. .++|+|+||+.|.+. + .+.++++|||||||+++... ...
T Consensus 318 ~~~~~~-~~~v~~~~g~~~~~~~~---~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i 392 (797)
T 4a2q_A 318 HHFERQ-GYSVQGISGENFSNVSV---EKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (797)
T ss_dssp HHHGGG-TCCEEEECCC-----CH---HHHHH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHH
T ss_pred HhcccC-CceEEEEeCCcchhhhH---HHhhC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHH
Confidence 866544 68999999987554432 22233 489999999988642 3 56788999999999975431 111
Q ss_pred HHhh--------cCCceEEEeecCCChh----------hHHHHHhcCCCcceeeCCCCC--------ccceeEEe-cc--
Q 003268 425 IASF--------KISVDVLTLSATPIPR----------TLYLALTGFRDASLISTPPPE--------RLPIKTHL-SA-- 475 (835)
Q Consensus 425 l~~~--------~~~~~vL~lSATp~p~----------tl~~~~~~~~d~s~i~~~p~~--------r~~V~~~~-~~-- 475 (835)
+..+ .+..++|+|||||... .... +....+...+...... ..+..... ..
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~-l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~ 471 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICS-LCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 471 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHH-HHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHH-HHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC
Confidence 1111 4557899999999531 1111 0011111111111000 00000000 00
Q ss_pred ------------------------------------c-------------------------------------------
Q 003268 476 ------------------------------------F------------------------------------------- 476 (835)
Q Consensus 476 ------------------------------------~------------------------------------------- 476 (835)
+
T Consensus 472 ~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 551 (797)
T 4a2q_A 472 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 551 (797)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------------------------------------------------------C--HHHHHHHHHHHH--hcC
Q 003268 477 ------------------------------------------------------------S--KEKVISAIKYEL--DRG 492 (835)
Q Consensus 477 ------------------------------------------------------------~--~~~~~~~i~~~l--~~g 492 (835)
+ ...+...+.... ..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~ 631 (797)
T 4a2q_A 552 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631 (797)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCC
Confidence 0 000111121211 345
Q ss_pred CeEEEEecCccChHHHHHHHHhh----------CCCCcEEEEcCCCCHHHHHHHHHHhhc-CCeeEEEECCcCccCCCCC
Q 003268 493 GQVFYVLPRIKGLEEPMDFLQQA----------FPGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQ 561 (835)
Q Consensus 493 gqvlVf~~~v~~ie~l~~~L~~~----------~p~~~V~~lHG~m~~~ere~vl~~F~~-g~~~VLVaT~iie~GIDIp 561 (835)
++++|||+++..++.+++.|... +.|..+..+||+|++.+|..++++|++ |+++|||||+++++|||+|
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp 711 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 711 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------C
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCch
Confidence 89999999999999999999873 124566677999999999999999999 9999999999999999999
Q ss_pred CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 562 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 562 ~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
++++||++|+| +++.+|+||+|| ||. +.|.||+|+++.+
T Consensus 712 ~v~~VI~yd~p-~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 712 QCNLVVLYEYS-GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp CCSEEEEESCC-SCHHHHHTC---------CCCEEEEECCHH
T ss_pred hCCEEEEeCCC-CCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 99999999998 499999999999 998 8999999998764
No 38
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=5.8e-37 Score=351.32 Aligned_cols=300 Identities=21% Similarity=0.200 Sum_probs=217.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
++++|+|+|.+|++.+++ ++++++++|||+|||++|+.++... +++++|++|+++|+.||+++|.+ |
T Consensus 90 ~~~~l~~~Q~~ai~~i~~-------~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~-- 156 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F-- 156 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT-------TTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-G--
T ss_pred CCCCcCHHHHHHHHHHHh-------cCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-C--
Confidence 577999999999998864 2579999999999999999888765 78999999999999999999987 5
Q ss_pred CCCcE-EEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc-c-ccccEEEeccccccchhhHHHHHhhcCCceE
Q 003268 358 YPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-Y-NNLGLLVVDEEQRFGVKQKEKIASFKISVDV 434 (835)
Q Consensus 358 ~~gi~-V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~-~-~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~v 434 (835)
+++ ++.++|+... ..+|+|+|++.+...+. + +++++|||||+|++.......+.......++
T Consensus 157 --~~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~ 221 (472)
T 2fwr_A 157 --GEEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFR 221 (472)
T ss_dssp --CGGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEE
T ss_pred --CCcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeE
Confidence 577 9999886532 37899999998875442 2 5699999999999866555556666677899
Q ss_pred EEeecCCChhh------------------HHHHHhc-CCCcce--eeCC--CCC------------------------cc
Q 003268 435 LTLSATPIPRT------------------LYLALTG-FRDASL--ISTP--PPE------------------------RL 467 (835)
Q Consensus 435 L~lSATp~p~t------------------l~~~~~~-~~d~s~--i~~~--p~~------------------------r~ 467 (835)
|+|||||.... ....... +.+... +... +.. ..
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 99999996211 1111111 111111 0000 000 00
Q ss_pred ceeEEecc---------------------cCHHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 003268 468 PIKTHLSA---------------------FSKEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 468 ~V~~~~~~---------------------~~~~~~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~l 524 (835)
.+...+.. .........+.+.+ ..+++++|||++++.++.+++.|. +..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------~~~~ 374 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------IPAI 374 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-------CCBC
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-------ccee
Confidence 00000000 00001122233323 357899999999999888887763 4578
Q ss_pred cCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC---CceEEEEEecC
Q 003268 525 HGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD---KEAHAYLFYPD 601 (835)
Q Consensus 525 HG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g---~~G~ay~l~~~ 601 (835)
||+++..+|+++++.|++|+++|||||+++++|+|+|++++||+++.+ +++.+|.|++||+||.| +.+++|.+++.
T Consensus 375 ~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~-~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 375 THRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGS-GSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCS-SCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCC-CCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999998 59999999999999998 34678889988
Q ss_pred CCcCCHHHHHHH
Q 003268 602 KSLLSDQALERL 613 (835)
Q Consensus 602 ~~~~~~~a~~rl 613 (835)
.+.....+..|.
T Consensus 454 ~t~ee~~~~~r~ 465 (472)
T 2fwr_A 454 GTGEVNTARRRK 465 (472)
T ss_dssp SCC---------
T ss_pred CCchHHHHHHHH
Confidence 877665555553
No 39
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.6e-37 Score=351.58 Aligned_cols=288 Identities=17% Similarity=0.230 Sum_probs=196.7
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
++|+|++||||||||++|+++++..+ ..+.+++|++||++||.|+++.+.. +.+.+..+..
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~-------~~v~~~~~~~----------- 69 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-------LDVKFHTQAF----------- 69 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------SCEEEESSCC-----------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc-------CCeEEecccc-----------
Confidence 68999999999999999999888754 5577999999999999999988763 2333332211
Q ss_pred HhcCCcceEecchHhhhc-------------ccccccccEEEeccccccchhh---HHHHHh--hcCCceEEEeecCCCh
Q 003268 382 IKHGHLNIIVGTHSLLGS-------------RVVYNNLGLLVVDEEQRFGVKQ---KEKIAS--FKISVDVLTLSATPIP 443 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~-------------~l~~~~l~lVIIDEaHr~g~~~---~e~l~~--~~~~~~vL~lSATp~p 443 (835)
. .++||+.+.+ ...+.++++|||||+|++.... ...+.. ...+.++++|||||++
T Consensus 70 ------~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 70 ------S-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPG 142 (440)
T ss_dssp ------C-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ------e-eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCc
Confidence 0 2566544432 2347899999999999982211 111111 1367899999999987
Q ss_pred hhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEE
Q 003268 444 RTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAI 523 (835)
Q Consensus 444 ~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~ 523 (835)
++..+... ...+. .+...+.......+... ....+++++||||+++.++.+++.|+.. ++.+..
T Consensus 143 ~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~---l~~~~~~~lVF~~s~~~a~~l~~~L~~~--~~~v~~ 206 (440)
T 1yks_A 143 TSDEFPHS---NGEIE--------DVQTDIPSEPWNTGHDW---ILADKRPTAWFLPSIRAANVMAASLRKA--GKSVVV 206 (440)
T ss_dssp CCCSSCCC---SSCEE--------EEECCCCSSCCSSSCHH---HHHCCSCEEEECSCHHHHHHHHHHHHHT--TCCEEE
T ss_pred hhhhhhhc---CCCee--------EeeeccChHHHHHHHHH---HHhcCCCEEEEeCCHHHHHHHHHHHHHc--CCCEEE
Confidence 75422111 00000 01111111111111222 2335789999999999999999999998 889999
Q ss_pred EcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE-------------------ecCCCCCHhHHHHHhc
Q 003268 524 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV-------------------QDVQQFGLAQLYQLRG 584 (835)
Q Consensus 524 lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi-------------------~d~p~~sl~~l~Qr~G 584 (835)
+|| .+|+++++.|++|+++|||||+++++|||+| +++||+ ++.| ++.++|+||+|
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p-~~~~~~~Qr~G 280 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR-ISASSAAQRRG 280 (440)
T ss_dssp CCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE-CCHHHHHHHHT
T ss_pred ecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc-cCHHHHHHhcc
Confidence 999 3688999999999999999999999999999 999986 6667 59999999999
Q ss_pred ccCCC-CCceEEEEEec---CCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCCcccccccCC
Q 003268 585 RVGRA-DKEAHAYLFYP---DKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGD 649 (835)
Q Consensus 585 RaGR~-g~~G~ay~l~~---~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~~lg~~q~g~ 649 (835)
|+||. |+.|.||+|+. +++.. ++..++. .+.++..++..++.+++++..|++.
T Consensus 281 R~GR~g~~~g~~~~l~~~~~~~~~~------~l~~l~~------~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (440)
T 1yks_A 281 RIGRNPNRDGDSYYYSEPTSENNAH------HVCWLEA------SMLLDNMEVRGGMVAPLYGVEGTKT 337 (440)
T ss_dssp TSSCCTTCCCEEEEECSCCCCCCTT------BHHHHHH------HHHHTTSCCGGGCCCCCSTTHHHHS
T ss_pred ccCCCCCCCceEEEEeccCChhhhh------hhhhhhH------HhccccccccccccccccchhhccC
Confidence 99997 68999999973 33322 2223322 1456667777778888877766553
No 40
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.6e-37 Score=366.65 Aligned_cols=321 Identities=20% Similarity=0.193 Sum_probs=217.8
Q ss_pred CCCHHHH-----HHHHHHHH-hhhcCCCCCcEEEEccCCCccHHHHHHHHHHH-HhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 281 EPTPDQK-----KAFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 281 ~~tp~Q~-----~AI~~Il~-~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~-~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
.|||+|. ++|+.++. ++ -..++|+|++||||||||++|+++++.. ...+.+++|++||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~--l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEM--LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGG--GSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHH--HhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 7899999 99887761 11 1247899999999999999999888865 45678999999999999999988763
Q ss_pred hhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh----hcccccccccEEEeccccccch---hhHHHHH
Q 003268 354 RFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL----GSRVVYNNLGLLVVDEEQRFGV---KQKEKIA 426 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L----~~~l~~~~l~lVIIDEaHr~g~---~~~e~l~ 426 (835)
+ ++ .+..+.. ..+.....-+-+.+.+.+ .....+.++++|||||+|+++. .....+.
T Consensus 293 -~----~i--~~~~~~l---------~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~ 356 (673)
T 2wv9_A 293 -L----PV--RYLTPAV---------QREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIA 356 (673)
T ss_dssp -S----CC--EECCC------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHH
T ss_pred -C----Ce--eeecccc---------cccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHH
Confidence 2 22 2222210 001111111222222222 2234688999999999999944 2333333
Q ss_pred hh--cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccC
Q 003268 427 SF--KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKG 504 (835)
Q Consensus 427 ~~--~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ 504 (835)
.. ..+.++|+|||||++....+ +..+.++...........+...+......+++++||||+++.
T Consensus 357 ~~~~~~~~~vl~~SAT~~~~i~~~--------------~~~~~~i~~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~ 422 (673)
T 2wv9_A 357 TRVEAGEAAAIFMTATPPGTSDPF--------------PDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKM 422 (673)
T ss_dssp HHHHTTSCEEEEECSSCTTCCCSS--------------CCCSSCEEEEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHH
T ss_pred HhccccCCcEEEEcCCCChhhhhh--------------cccCCceEEEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHH
Confidence 33 26789999999997653211 111222222221111111111122233468999999999999
Q ss_pred hHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE----------------
Q 003268 505 LEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV---------------- 568 (835)
Q Consensus 505 ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi---------------- 568 (835)
++.+++.|+.. ++.+..+||+ +|+++++.|++|+++|||||+++++|||+| +++||+
T Consensus 423 ~e~la~~L~~~--g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r 495 (673)
T 2wv9_A 423 SNEIAQCLQRA--GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGR 495 (673)
T ss_dssp HHHHHHHHHTT--TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCE
T ss_pred HHHHHHHHHhC--CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccc
Confidence 99999999988 8999999994 799999999999999999999999999999 999998
Q ss_pred ----ecCCCCCHhHHHHHhcccCCC-CCceEEEEEe---cCCCcCCHHHHHHHHHHHHHhhcccchhhhhhhhccccCCC
Q 003268 569 ----QDVQQFGLAQLYQLRGRVGRA-DKEAHAYLFY---PDKSLLSDQALERLAALEECRELGQGFQLAEKDMGIRGFGT 640 (835)
Q Consensus 569 ----~d~p~~sl~~l~Qr~GRaGR~-g~~G~ay~l~---~~~~~~~~~a~~rl~~i~~~~~l~sg~~la~~dL~irG~g~ 640 (835)
++.|. +.++|+||+||+||. |+.|.||+|+ ++.+.......+....+... .+..||.++..+.+.++.++
T Consensus 496 ~~ll~d~P~-s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~-~~~~g~~~a~~~~~q~~~~~ 573 (673)
T 2wv9_A 496 VILSVPSAI-TSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNI-HLPNGLVAQLYGPERDKTYT 573 (673)
T ss_dssp EEECCSEEC-CHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTS-CBTTTBCCCCCGGGGGGCCC
T ss_pred ceecccCCC-CHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhc-cCCchhhhhccchhhhcccc
Confidence 34554 789999999999999 7899999996 34443333333333333333 55678888877776666655
Q ss_pred cc
Q 003268 641 IF 642 (835)
Q Consensus 641 ~l 642 (835)
+.
T Consensus 574 ~~ 575 (673)
T 2wv9_A 574 MD 575 (673)
T ss_dssp CT
T ss_pred ch
Confidence 54
No 41
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.6e-35 Score=370.03 Aligned_cols=277 Identities=17% Similarity=0.155 Sum_probs=198.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH-HHHhCCCEEEEEcccHHHHHHHHHH
Q 003268 272 AEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF-CVVSAGKQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 272 ~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~-~~~~~g~qvlVLvPtr~La~Q~~~~ 350 (835)
+.|.+.++|.| |+|.+||+.++. ++|++++||||||||+ |.++++ .....+.+++|++||++||.|+++.
T Consensus 48 ~~~~~~~g~~p-~iQ~~ai~~il~-------g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~ 118 (1054)
T 1gku_B 48 EFFRKCVGEPR-AIQKMWAKRILR-------KESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAET 118 (1054)
T ss_dssp HHHHTTTCSCC-HHHHHHHHHHHT-------TCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHhcCCCH-HHHHHHHHHHHh-------CCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHH
Confidence 44556677788 999999999974 4799999999999998 555554 4456688999999999999999999
Q ss_pred HHHhhcCCCCc----EEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc-cccccEEEeccccccch---hhH
Q 003268 351 VSERFSKYPDI----KVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV-YNNLGLLVVDEEQRFGV---KQK 422 (835)
Q Consensus 351 ~~~~f~~~~gi----~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~-~~~l~lVIIDEaHr~g~---~~~ 422 (835)
++..+... ++ +++.++|+.+..++...+..+.+ ++|+|+||+.|.+.+. +.++++|||||||++.. ...
T Consensus 119 l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~~~~~~~ 195 (1054)
T 1gku_B 119 IRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVD 195 (1054)
T ss_dssp HHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHTSTHHHH
T ss_pred HHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhhccccHH
Confidence 99855444 67 89999999988877767777766 8999999999986544 67899999999999643 222
Q ss_pred HHHHhh-----------cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC--CccceeEEecccCHHHHHHHHHHHH
Q 003268 423 EKIASF-----------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP--ERLPIKTHLSAFSKEKVISAIKYEL 489 (835)
Q Consensus 423 e~l~~~-----------~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~--~r~~V~~~~~~~~~~~~~~~i~~~l 489 (835)
..+..+ ....+++++|||+.+. .......+.++..+...+. ....+...+....... .+...+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~---~L~~ll 271 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESIS---TLSSIL 271 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTT---TTHHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEechhHHH---HHHHHH
Confidence 222222 3457789999998665 2111111111111111111 1122333332222211 122222
Q ss_pred hc-CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEE----CCcCccCCCCCCc-
Q 003268 490 DR-GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILIC----TNIVESGLDIQNA- 563 (835)
Q Consensus 490 ~~-ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVa----T~iie~GIDIp~v- 563 (835)
.. +++++|||++++.++.+++.|... +.+..+||+| +.+++.|++|+.+|||| |+++++|||+|+|
T Consensus 272 ~~~~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 272 EKLGTGGIIYARTGEEAEEIYESLKNK---FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp TTSCSCEEEEESSHHHHHHHHHTTTTS---SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred hhcCCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 22 689999999999999999999876 7899999998 47889999999999999 9999999999995
Q ss_pred CEEEEecCC
Q 003268 564 NTIIVQDVQ 572 (835)
Q Consensus 564 ~~VIi~d~p 572 (835)
++||++|.|
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 999999999
No 42
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.7e-34 Score=339.08 Aligned_cols=317 Identities=19% Similarity=0.214 Sum_probs=228.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
..|.|||+|..+++.++. |+ |..++||+|||++|.+|++.....|++|+||+||++||.|.++.+.. +..
T Consensus 80 lG~~pt~VQ~~~ip~ll~-------G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~-l~~ 149 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVALHD-------GN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGK-IFE 149 (844)
T ss_dssp HSCCCCHHHHHHHHHHHT-------TS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH-HHH
T ss_pred cCCCCcHHHHHhhHHHhC-------CC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHH-HHh
Confidence 345999999999998874 33 99999999999999999985556789999999999999999999987 445
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hcc-------cccccccEEEeccccccch------
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GSR-------VVYNNLGLLVVDEEQRFGV------ 419 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~~-------l~~~~l~lVIIDEaHr~g~------ 419 (835)
+.|++|+++.|+.+..++... .+ +||+||||+.| .+. +.++.+.++||||||++..
T Consensus 150 ~lgl~v~~i~gg~~~~~r~~~-----~~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKREA-----YA-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp HTTCCEEECCTTSCHHHHHHH-----HH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred hcCCeEEEEeCCCCHHHHHHh-----cC-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 558999999999876554332 23 89999999988 332 4467899999999999631
Q ss_pred --------------hhHH-HHHhhc---------CCceEE-----------------EeecCCCh--hhHHHH---HhcC
Q 003268 420 --------------KQKE-KIASFK---------ISVDVL-----------------TLSATPIP--RTLYLA---LTGF 453 (835)
Q Consensus 420 --------------~~~e-~l~~~~---------~~~~vL-----------------~lSATp~p--~tl~~~---~~~~ 453 (835)
.... .+..+. ...+++ ++|||.+. .....+ ...+
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~ 303 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAM 303 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTC
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHh
Confidence 1122 233333 245565 78888532 111111 0000
Q ss_pred -CC-----------------------------------------------------------------------------
Q 003268 454 -RD----------------------------------------------------------------------------- 455 (835)
Q Consensus 454 -~d----------------------------------------------------------------------------- 455 (835)
++
T Consensus 304 ~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e 383 (844)
T 1tf5_A 304 QKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEE 383 (844)
T ss_dssp CBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHH
Confidence 00
Q ss_pred ------cceeeCCCCCcccee----EEecccCHHHHHHHHHHH----HhcCCeEEEEecCccChHHHHHHHHhhCCCCcE
Q 003268 456 ------ASLISTPPPERLPIK----THLSAFSKEKVISAIKYE----LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDI 521 (835)
Q Consensus 456 ------~s~i~~~p~~r~~V~----~~~~~~~~~~~~~~i~~~----l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V 521 (835)
..++.+| .++.... ..+. ........++... ...+.++||||++++.++.+++.|... |+.+
T Consensus 384 ~~~iY~l~vv~IP-tn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~--gi~~ 459 (844)
T 1tf5_A 384 FRNIYNMQVVTIP-TNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK--GIPH 459 (844)
T ss_dssp HHHHHCCCEEECC-CSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT--TCCC
T ss_pred HHHHhCCceEEec-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CCCE
Confidence 0011111 1111110 0111 1233333444433 345778999999999999999999998 8999
Q ss_pred EEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCC--------CcCEEEEecCCCCCHhHHHHHhcccCCCCCce
Q 003268 522 AIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEA 593 (835)
Q Consensus 522 ~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp--------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G 593 (835)
.++||++.+.+++.+...|+.| .|+|||++++||+||+ ++.+||+++.|. +...|.||+||+||.|.+|
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~-s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE-SRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS-SHHHHHHHHTTSSGGGCCE
T ss_pred EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC-CHHHHHhhcCccccCCCCC
Confidence 9999999888887777777666 6999999999999999 788999999997 9999999999999999999
Q ss_pred EEEEEecCCCcCC-HHHHHHHHHHH
Q 003268 594 HAYLFYPDKSLLS-DQALERLAALE 617 (835)
Q Consensus 594 ~ay~l~~~~~~~~-~~a~~rl~~i~ 617 (835)
.+++|++.++.+. ....+++..+.
T Consensus 537 ~s~~~vs~eD~l~r~f~~~~~~~~~ 561 (844)
T 1tf5_A 537 ITQFYLSMEDELMRRFGAERTMAML 561 (844)
T ss_dssp EEEEEEETTSSGGGSSHHHHHHHHH
T ss_pred eEEEEecHHHHHHHHHhHHHHHHHH
Confidence 9999998766432 22344444443
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=9.2e-35 Score=359.80 Aligned_cols=311 Identities=17% Similarity=0.180 Sum_probs=183.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-----CCEEEEEcccHHHHHHHHHHHH
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-----GKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-----g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+++.|+|+|.+|++.++. ++++|+++|||+|||++|+.++...+.. +.+++|++||++|+.|++++|+
T Consensus 245 ~~~~~r~~Q~~ai~~il~-------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~ 317 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (936)
T ss_dssp ---CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc-------CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 467999999999999864 4789999999999999999999877655 6789999999999999999999
Q ss_pred HhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----c-ccccccEEEeccccccchhh--HHH
Q 003268 353 ERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----V-VYNNLGLLVVDEEQRFGVKQ--KEK 424 (835)
Q Consensus 353 ~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----l-~~~~l~lVIIDEaHr~g~~~--~e~ 424 (835)
..+... ++++..++|+.+...... .+.. .++|+|+||+.|.+. + .+.++++|||||||++.... ...
T Consensus 318 ~~~~~~-~~~v~~~~G~~~~~~~~~---~~~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 318 HHFERQ-GYSVQGISGENFSNVSVE---KVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HHHHTT-TCCEEEECCC-----CCH---HHHH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred HHhccc-CceEEEEECCcchhhHHH---Hhcc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHH
Confidence 866544 789999999875443221 2222 389999999988642 3 46788999999999975321 111
Q ss_pred HHhh--------cCCceEEEeecCCChhh-------HH--HHHhcCCCcceeeCCCCC--------ccceeEEe------
Q 003268 425 IASF--------KISVDVLTLSATPIPRT-------LY--LALTGFRDASLISTPPPE--------RLPIKTHL------ 473 (835)
Q Consensus 425 l~~~--------~~~~~vL~lSATp~p~t-------l~--~~~~~~~d~s~i~~~p~~--------r~~V~~~~------ 473 (835)
+..+ .+..++++|||||.... .. ..+....+...+...... ..+.....
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 472 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRI 472 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCS
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEeccccc
Confidence 1111 45578999999995310 00 000011111111111000 00000000
Q ss_pred ------------------------------------cc-------------------cC---------------------
Q 003268 474 ------------------------------------SA-------------------FS--------------------- 477 (835)
Q Consensus 474 ------------------------------------~~-------------------~~--------------------- 477 (835)
.. ..
T Consensus 473 ~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 552 (936)
T 4a2w_A 473 HNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (936)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 00 00
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHH------hcCC
Q 003268 478 ----------------------------------------------------------KEKVISAIKYEL------DRGG 493 (835)
Q Consensus 478 ----------------------------------------------------------~~~~~~~i~~~l------~~gg 493 (835)
.......+.+.+ ..++
T Consensus 553 ~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (936)
T 4a2w_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (936)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTC
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCC
Confidence 000011111122 2358
Q ss_pred eEEEEecCccChHHHHHHHHhh----------CCCCcEEEEcCCCCHHHHHHHHHHhhc-CCeeEEEECCcCccCCCCCC
Q 003268 494 QVFYVLPRIKGLEEPMDFLQQA----------FPGVDIAIAHGQQYSRQLEETMEKFAQ-GAIKILICTNIVESGLDIQN 562 (835)
Q Consensus 494 qvlVf~~~v~~ie~l~~~L~~~----------~p~~~V~~lHG~m~~~ere~vl~~F~~-g~~~VLVaT~iie~GIDIp~ 562 (835)
++||||++++.++.+++.|... +.|..+..+||+|++.+|.+++++|++ |+++|||||+++++|||+|+
T Consensus 633 rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~ 712 (936)
T 4a2w_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (936)
T ss_dssp CEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchh
Confidence 9999999999999999999975 224456667899999999999999999 99999999999999999999
Q ss_pred cCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+++||++|+| +++.+|+||+|| ||. +.|.||++++..+
T Consensus 713 v~~VI~yD~p-~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 713 CNLVVLYEYS-GNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp CSEEEEESCC-SCSHHHHCC---------CCCEEEEESCHH
T ss_pred CCEEEEeCCC-CCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 9999999998 499999999999 998 7899999987654
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.3e-34 Score=370.45 Aligned_cols=309 Identities=20% Similarity=0.227 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
.++|+|.+|++.++. .+.|+++++|||||||++|.+|++..+. .+.+++|++|+++||.|.++.|.++|+..
T Consensus 926 ~fnpiQ~q~~~~l~~------~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~ 999 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYN------SDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDR 999 (1724)
T ss_dssp BCCHHHHHHHHHHHS------CCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhc------CCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchh
Confidence 699999999999874 2578999999999999999999998875 36789999999999999999999989876
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-------ccccccccEEEeccccccchhh---HH-HHH-
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEEQRFGVKQ---KE-KIA- 426 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-------~l~~~~l~lVIIDEaHr~g~~~---~e-~l~- 426 (835)
.|++|+.++|+.+...+ . + +.++|+|+||+.+.. ...+.++++||+||+|.++... .+ .+.
T Consensus 1000 ~g~~V~~ltGd~~~~~~--~---~--~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~r 1072 (1724)
T 4f92_B 1000 LNKKVVLLTGETSTDLK--L---L--GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSR 1072 (1724)
T ss_dssp SCCCEEECCSCHHHHHH--H---H--HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcchh--h---c--CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHH
Confidence 68999999996543221 1 1 247999999987631 1235789999999999875421 11 111
Q ss_pred ------hhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCc-cceeEEecccC----HH------HHHHHHHHHH
Q 003268 427 ------SFKISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPER-LPIKTHLSAFS----KE------KVISAIKYEL 489 (835)
Q Consensus 427 ------~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r-~~V~~~~~~~~----~~------~~~~~i~~~l 489 (835)
....++++|+||||.........+.+..........+..| .+.+.++..+. .. ..........
T Consensus 1073 l~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 1152 (1724)
T 4f92_B 1073 MRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH 1152 (1724)
T ss_dssp HHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh
Confidence 2356889999999974322222222333323332222222 23333332211 11 1111222334
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhC--------------------------------CCCcEEEEcCCCCHHHHHHHH
Q 003268 490 DRGGQVFYVLPRIKGLEEPMDFLQQAF--------------------------------PGVDIAIAHGQQYSRQLEETM 537 (835)
Q Consensus 490 ~~ggqvlVf~~~v~~ie~l~~~L~~~~--------------------------------p~~~V~~lHG~m~~~ere~vl 537 (835)
..+++++|||+++..++.++..|.... -..+|+++||+|++.+|+.++
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 567899999999999888876654321 013699999999999999999
Q ss_pred HHhhcCCeeEEEECCcCccCCCCCCcCEEEE----ecCC-----CCCHhHHHHHhcccCCCCC--ceEEEEEecCC
Q 003268 538 EKFAQGAIKILICTNIVESGLDIQNANTIIV----QDVQ-----QFGLAQLYQLRGRVGRADK--EAHAYLFYPDK 602 (835)
Q Consensus 538 ~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi----~d~p-----~~sl~~l~Qr~GRaGR~g~--~G~ay~l~~~~ 602 (835)
+.|++|.++|||||+++++|||+|...+||. ++.. .++..+|.||+|||||.|. .|.|++++++.
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 9999999999999999999999996555542 2221 2478999999999999985 79999998765
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.6e-35 Score=335.15 Aligned_cols=279 Identities=19% Similarity=0.236 Sum_probs=202.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH-HHhCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~-~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
..+++|+|. +|+.+++ + ...+++++|||||||++|+.+++. ....+.+++|++||++||.|+++.+.
T Consensus 2 ~~q~~~iq~-~i~~~l~----~--~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~----- 69 (451)
T 2jlq_A 2 SAMGEPDYE-VDEDIFR----K--KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR----- 69 (451)
T ss_dssp CCCCSCCCC-CCGGGGS----T--TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-----
T ss_pred CCCCCCcHH-HHHHHHh----c--CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-----
Confidence 347889985 7877653 1 234599999999999998888775 45567899999999999999998774
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc----ccccccccEEEeccccccchhh---HHHHH--hh
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVKQ---KEKIA--SF 428 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~g~~~---~e~l~--~~ 428 (835)
+..+.+..+.... ...+...|.++|++.+.. ...+.++++|||||+|++.... ...+. ..
T Consensus 70 --g~~v~~~~~~~~~---------~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 70 --GLPIRYQTPAVKS---------DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE 138 (451)
T ss_dssp --TSCEEECCTTCSC---------CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHH
T ss_pred --Cceeeeeeccccc---------cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhc
Confidence 3445544432211 112346788999887643 3457899999999999873321 12221 23
Q ss_pred cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHH
Q 003268 429 KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEP 508 (835)
Q Consensus 429 ~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l 508 (835)
.++.++++|||||++...... ..+..++... ...+...+. .+...+ ...+++++||||+++.++.+
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~--~~~p~~~~~------~~~~~l---~~~~~~~lVF~~s~~~a~~l 204 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPFP---QSNSPIEDIE--REIPERSWN------TGFDWI---TDYQGKTVWFVPSIKAGNDI 204 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSSC---CCSSCEEEEE--CCCCSSCCS------SSCHHH---HHCCSCEEEECSSHHHHHHH
T ss_pred CCCceEEEEccCCCccchhhh---cCCCceEecC--ccCCchhhH------HHHHHH---HhCCCCEEEEcCCHHHHHHH
Confidence 457899999999976543211 1222222211 001111110 011222 23478999999999999999
Q ss_pred HHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec------------------
Q 003268 509 MDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD------------------ 570 (835)
Q Consensus 509 ~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d------------------ 570 (835)
++.|+.. ++.+..+||++. +++++.|++|+.+|||||+++++|||+|+ ++||+++
T Consensus 205 ~~~L~~~--g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~ 277 (451)
T 2jlq_A 205 ANCLRKS--GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILA 277 (451)
T ss_dssp HHHHHTT--TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEE
T ss_pred HHHHHHc--CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeec
Confidence 9999987 889999999864 67999999999999999999999999999 9999988
Q ss_pred --CCCCCHhHHHHHhcccCCCCC-ceEEEEEecCC
Q 003268 571 --VQQFGLAQLYQLRGRVGRADK-EAHAYLFYPDK 602 (835)
Q Consensus 571 --~p~~sl~~l~Qr~GRaGR~g~-~G~ay~l~~~~ 602 (835)
.| .+.++|+||+||+||.|. .|.||+|+...
T Consensus 278 ~~~p-~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 278 GPIP-VTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp EEEE-CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccc-CCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 66 489999999999999997 89999998544
No 46
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.1e-33 Score=333.69 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=189.6
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---------CCCEEEEEcccHHHHHHHH-H
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPTIVLAKQHF-D 349 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---------~g~qvlVLvPtr~La~Q~~-~ 349 (835)
+.|+|+|.+|++.++..+.+ ...+++++++||||||++++..+...+. .++++|||+||++|+.|++ +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~--~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQ--GKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHT--TCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhc--CCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 48999999999999887743 2356899999999999998877766655 4589999999999999998 6
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc---------cccccccEEEeccccccchh
Q 003268 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR---------VVYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~---------l~~~~l~lVIIDEaHr~g~~ 420 (835)
.|+. | +..+..+.+.. ..+..+|+|+|++.|... +...++++|||||||++...
T Consensus 255 ~~~~-~----~~~~~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 255 TFTP-F----GDARHKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR 317 (590)
T ss_dssp CCTT-T----CSSEEECCC--------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----
T ss_pred HHHh-c----chhhhhhhccC------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc
Confidence 5553 3 23455554321 124589999999988653 33467899999999998652
Q ss_pred ---hHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceee----------CCCCCccceeEE---------------
Q 003268 421 ---QKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS----------TPPPERLPIKTH--------------- 472 (835)
Q Consensus 421 ---~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~----------~~p~~r~~V~~~--------------- 472 (835)
....+....++.++|+|||||...........+..+.... ..|.....+...
T Consensus 318 ~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (590)
T 3h1t_A 318 DNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDR 397 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------
T ss_pred chHHHHHHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccc
Confidence 3344444446678999999997533222221121111000 011100011000
Q ss_pred ---------eccc----------CHHHHHHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhCCCC------cEEEE
Q 003268 473 ---------LSAF----------SKEKVISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAFPGV------DIAIA 524 (835)
Q Consensus 473 ---------~~~~----------~~~~~~~~i~~~l---~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~------~V~~l 524 (835)
.... ....+.+.+...+ ..+++++|||+++++++.+++.|.+..+.. .+..+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 398 FGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp -----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred cccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 0000 0011222332222 446899999999999999999998875432 37889
Q ss_pred cCCCCHHHHHHHHHHhhcCCee---EEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCC
Q 003268 525 HGQQYSRQLEETMEKFAQGAIK---ILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK 591 (835)
Q Consensus 525 HG~m~~~ere~vl~~F~~g~~~---VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~ 591 (835)
||+++. +|+.++++|++|+.+ |||||+++++|||+|++++||+++.+. +...|+||+||+||.+.
T Consensus 478 ~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~-s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN-SMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC-CHHHHHHHHTTSCCCBG
T ss_pred eCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCC-ChHHHHHHHhhhcccCc
Confidence 999864 799999999998876 899999999999999999999999985 99999999999999874
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.5e-33 Score=362.20 Aligned_cols=311 Identities=20% Similarity=0.222 Sum_probs=223.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-----------CCCEEEEEcccHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-----------AGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-----------~g~qvlVLvPtr~La~Q~~ 348 (835)
..++|+|.++++.++. .+.|+|+|+|||||||++|.++++..+. ++.+++|++|+++||.|.+
T Consensus 78 ~~ln~iQs~~~~~al~------~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~ 151 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALE------TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 151 (1724)
T ss_dssp SBCCHHHHHTHHHHHT------CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc------CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHH
Confidence 3799999999998874 2578999999999999999999998874 3578999999999999999
Q ss_pred HHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-------ccccccccEEEeccccccchh-
Q 003268 349 DVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEEQRFGVK- 420 (835)
Q Consensus 349 ~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-------~l~~~~l~lVIIDEaHr~g~~- 420 (835)
+.|.++|+.. |++|+.++|+.+...+. ...++|+|+||+.+.. ...++++++|||||+|.++..
T Consensus 152 ~~l~~~~~~~-gi~V~~~tGd~~~~~~~-------~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~R 223 (1724)
T 4f92_B 152 GSFGKRLATY-GITVAELTGDHQLCKEE-------ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDR 223 (1724)
T ss_dssp HHHHHHHTTT-TCCEEECCSSCSSCCTT-------GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTT
T ss_pred HHHHHHHhhC-CCEEEEEECCCCCCccc-------cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCcc
Confidence 9999989877 79999999986543311 1358999999987631 112578999999999977542
Q ss_pred --hHHH--------HHhhcCCceEEEeecCCCh-hhHHHHHhcCCCcceeeCCCC-CccceeEEec---ccCHHH----H
Q 003268 421 --QKEK--------IASFKISVDVLTLSATPIP-RTLYLALTGFRDASLISTPPP-ERLPIKTHLS---AFSKEK----V 481 (835)
Q Consensus 421 --~~e~--------l~~~~~~~~vL~lSATp~p-~tl~~~~~~~~d~s~i~~~p~-~r~~V~~~~~---~~~~~~----~ 481 (835)
..+. +.....++++|+||||.++ ..+...+.............. ...|+...+. ...... +
T Consensus 224 G~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~ 303 (1724)
T 4f92_B 224 GPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIM 303 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHH
Confidence 1121 1234578999999999743 222222211100011111111 1123333221 111111 1
Q ss_pred HHHHHHHH---hcCCeEEEEecCccChHHHHHHHHhhC-----------------------------------CCCcEEE
Q 003268 482 ISAIKYEL---DRGGQVFYVLPRIKGLEEPMDFLQQAF-----------------------------------PGVDIAI 523 (835)
Q Consensus 482 ~~~i~~~l---~~ggqvlVf~~~v~~ie~l~~~L~~~~-----------------------------------p~~~V~~ 523 (835)
...+...+ ..+++++|||++++.++.+++.|.+.. -..+|++
T Consensus 304 ~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~ 383 (1724)
T 4f92_B 304 NEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 383 (1724)
T ss_dssp HHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEE
T ss_pred HHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEE
Confidence 11222222 346799999999999999988876431 0136999
Q ss_pred EcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE----ecCC-----CCCHhHHHHHhcccCCCC--Cc
Q 003268 524 AHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV----QDVQ-----QFGLAQLYQLRGRVGRAD--KE 592 (835)
Q Consensus 524 lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi----~d~p-----~~sl~~l~Qr~GRaGR~g--~~ 592 (835)
+||+|++++|..+++.|++|.++|||||++++.|||+|..++||. ++.. ..+..+|.||+|||||.| ..
T Consensus 384 HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~ 463 (1724)
T 4f92_B 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTK 463 (1724)
T ss_dssp ECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred EcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999996665553 4432 147899999999999987 57
Q ss_pred eEEEEEecCCCc
Q 003268 593 AHAYLFYPDKSL 604 (835)
Q Consensus 593 G~ay~l~~~~~~ 604 (835)
|.++++.++.+.
T Consensus 464 G~~ii~~~~~~~ 475 (1724)
T 4f92_B 464 GEGILITSHGEL 475 (1724)
T ss_dssp EEEEEEEESTTC
T ss_pred cEEEEEecchhH
Confidence 999999887654
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.4e-33 Score=329.35 Aligned_cols=304 Identities=20% Similarity=0.189 Sum_probs=211.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
....|||+|..+++.++. |+ |..++||+|||++|.+|++.....|++++|++||++||.|+++.+.. +..
T Consensus 71 lg~~p~~VQ~~~i~~ll~-------G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~-l~~ 140 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVLNE-------RC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRP-LFE 140 (853)
T ss_dssp HSCCCCHHHHHHHHHHHS-------SE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHH-HHH
T ss_pred cCCCCChHHHhhcccccC-------Ce--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHH-HHH
Confidence 456999999999998863 22 99999999999999999986666789999999999999999999987 444
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh-----cc-------cccccccEEEeccccccchh-----
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SR-------VVYNNLGLLVVDEEQRFGVK----- 420 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~-----~~-------l~~~~l~lVIIDEaHr~g~~----- 420 (835)
+.|++|+++.|+.+...+.. ..+ ++|+||||++|. +. +.+++++++||||||++...
T Consensus 141 ~lgl~v~~i~GG~~~~~r~~-----~~~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tp 214 (853)
T 2fsf_A 141 FLGLTVGINLPGMPAPAKRE-----AYA-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTP 214 (853)
T ss_dssp HTTCCEEECCTTCCHHHHHH-----HHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCE
T ss_pred hcCCeEEEEeCCCCHHHHHH-----hcC-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccc
Confidence 55899999999987654322 223 899999999872 22 44588999999999986411
Q ss_pred ---------------h-HHHHHhhcC--------------------CceEE------------------------EeecC
Q 003268 421 ---------------Q-KEKIASFKI--------------------SVDVL------------------------TLSAT 440 (835)
Q Consensus 421 ---------------~-~e~l~~~~~--------------------~~~vL------------------------~lSAT 440 (835)
. ...+..+.. ..+++ ++|||
T Consensus 215 LIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat 294 (853)
T 2fsf_A 215 LIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPA 294 (853)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcc
Confidence 1 111222221 22332 78888
Q ss_pred CChh--hHHHHH---h---------------------------------cCC----------------------------
Q 003268 441 PIPR--TLYLAL---T---------------------------------GFR---------------------------- 454 (835)
Q Consensus 441 p~p~--tl~~~~---~---------------------------------~~~---------------------------- 454 (835)
.++. ....++ . |+.
T Consensus 295 ~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr 374 (853)
T 2fsf_A 295 NIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFR 374 (853)
T ss_dssp --------------------------------------------------------------CCCCCEEEEEEEHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHh
Confidence 5321 110000 0 000
Q ss_pred -----------------------CcceeeCCCCCccce----eEEecccCHHHHHHHHHHHH----hcCCeEEEEecCcc
Q 003268 455 -----------------------DASLISTPPPERLPI----KTHLSAFSKEKVISAIKYEL----DRGGQVFYVLPRIK 503 (835)
Q Consensus 455 -----------------------d~s~i~~~p~~r~~V----~~~~~~~~~~~~~~~i~~~l----~~ggqvlVf~~~v~ 503 (835)
+..++.+| .++... ...+ ..+......++.+.+ ..+.++||||++++
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IP-tn~p~~R~d~~d~v-~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie 452 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVP-TNRPMIRKDLPDLV-YMTEAEKIQAIIEDIKERTAKGQPVLVGTISIE 452 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECC-CSSCCCCEECCCEE-ESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcC-CCCCceeecCCcEE-EeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 00111111 111000 0011 123333444444433 45678999999999
Q ss_pred ChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc--------------------
Q 003268 504 GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA-------------------- 563 (835)
Q Consensus 504 ~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v-------------------- 563 (835)
.++.+++.|... ++.+.++||++.+.+++.+.++|+.| .|+|||++++||+||+..
T Consensus 453 ~se~Ls~~L~~~--gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~ 528 (853)
T 2fsf_A 453 KSELVSNELTKA--GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEK 528 (853)
T ss_dssp HHHHHHHHHHHT--TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHH
T ss_pred HHHHHHHHHHHC--CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHH
Confidence 999999999998 89999999999988888888999988 699999999999999963
Q ss_pred -----------------CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 564 -----------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 564 -----------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+||+++.|. +...|.||+||+||.|.+|.+++|++.++.
T Consensus 529 ~~~~~~~~~~~V~~~GGl~VI~te~pe-s~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 529 IKADWQVRHDAVLEAGGLHIIGTERHE-SRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESSCCS-SHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHHHhhhhhhHHHhcCCcEEEEccCCC-CHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999997 999999999999999999999999886653
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6e-32 Score=321.89 Aligned_cols=306 Identities=17% Similarity=0.166 Sum_probs=226.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
....+.|||+|..+++.++. |+ |.+++||+|||++|.+|++.....|++|+|++||++||.|.++.+.. +
T Consensus 106 R~lG~rP~~VQ~~~ip~Ll~-------G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~-l 175 (922)
T 1nkt_A 106 RVLDQRPFDVQVMGAAALHL-------GN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGR-V 175 (922)
T ss_dssp HHHSCCCCHHHHHHHHHHHT-------TE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHH-H
T ss_pred HHcCCCCCHHHHHHHHhHhc-------CC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHH-H
Confidence 34567999999999998864 22 99999999999999999976556789999999999999999999987 4
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhh-----hc-------ccccccccEEEeccccccch----
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLL-----GS-------RVVYNNLGLLVVDEEQRFGV---- 419 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L-----~~-------~l~~~~l~lVIIDEaHr~g~---- 419 (835)
..+.|++|+++.|+.+..++.... .+||+||||+.| .+ .+.++.+.++||||||++..
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDear 249 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEAR 249 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGG
T ss_pred HhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCc
Confidence 455589999999998765543322 389999999987 22 24567899999999998641
Q ss_pred ----------------hh-HHHHHhhc---------CCceEE-----------------EeecCCChh--hHHHHH---h
Q 003268 420 ----------------KQ-KEKIASFK---------ISVDVL-----------------TLSATPIPR--TLYLAL---T 451 (835)
Q Consensus 420 ----------------~~-~e~l~~~~---------~~~~vL-----------------~lSATp~p~--tl~~~~---~ 451 (835)
.. ...+..+. +..+++ ++|||.++. ....++ .
T Consensus 250 tPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~ 329 (922)
T 1nkt_A 250 TPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKE 329 (922)
T ss_dssp SCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHH
T ss_pred cceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHH
Confidence 11 23344444 466777 889996531 111111 0
Q ss_pred cC-CC-------c-------------------------------------------------------------------
Q 003268 452 GF-RD-------A------------------------------------------------------------------- 456 (835)
Q Consensus 452 ~~-~d-------~------------------------------------------------------------------- 456 (835)
.+ ++ .
T Consensus 330 l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~ 409 (922)
T 1nkt_A 330 LFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEA 409 (922)
T ss_dssp HCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHH
Confidence 00 00 0
Q ss_pred ---------ceeeCCCCCcccee----EEecccCHHHHHHHHHHH----HhcCCeEEEEecCccChHHHHHHHHhhCCCC
Q 003268 457 ---------SLISTPPPERLPIK----THLSAFSKEKVISAIKYE----LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGV 519 (835)
Q Consensus 457 ---------s~i~~~p~~r~~V~----~~~~~~~~~~~~~~i~~~----l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~ 519 (835)
.++.+| .++.... ..+. ........++... ...+.++||||++++.++.+++.|... ++
T Consensus 410 ~Ef~~iY~l~vv~IP-tn~p~~R~d~~d~v~-~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~--Gi 485 (922)
T 1nkt_A 410 AELHEIYKLGVVSIP-TNMPMIREDQSDLIY-KTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR--RI 485 (922)
T ss_dssp HHHHHHHCCEEEECC-CSSCCCCEECCCEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHhCCCeEEeC-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC--CC
Confidence 011111 1110000 0111 1223333444333 345678999999999999999999998 89
Q ss_pred cEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCc------------------------------------
Q 003268 520 DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNA------------------------------------ 563 (835)
Q Consensus 520 ~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v------------------------------------ 563 (835)
.+.++||++.+.+++.+.+.|+.| .|+|||++++||+||+..
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIV 563 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHH
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence 999999999888888888888887 699999999999999964
Q ss_pred ----------------CEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 564 ----------------NTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 564 ----------------~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
.+||+++.|. +...|.||+||+||.|.+|.+.+|++.++.
T Consensus 564 ~~~~~~~~~~V~~~GGlhVI~te~pe-s~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 564 KEEASKEAKEVIEAGGLYVLGTERHE-SRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTTHHHHHHHHTTSEEEEECSCCS-SHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHhhhHHHhcCCcEEEeccCCC-CHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999997 999999999999999999999999986653
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=4.3e-33 Score=319.60 Aligned_cols=262 Identities=22% Similarity=0.214 Sum_probs=183.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
+.++|+++|||||||++|+++++..+ ..+.+++|++||++||.|+++++. |..+....+.....
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~-------- 85 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE-------- 85 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--------------
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC--------
Confidence 67999999999999999998888654 467899999999999999998875 34444443321110
Q ss_pred HhcCCcceEecchHhhh----cccccccccEEEeccccccchh---hHHHHH--hhcCCceEEEeecCCChhhHHHHHhc
Q 003268 382 IKHGHLNIIVGTHSLLG----SRVVYNNLGLLVVDEEQRFGVK---QKEKIA--SFKISVDVLTLSATPIPRTLYLALTG 452 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~----~~l~~~~l~lVIIDEaHr~g~~---~~e~l~--~~~~~~~vL~lSATp~p~tl~~~~~~ 452 (835)
......+.+.|++.+. ....++++++|||||+|++... ....+. ....+.++++||||+++....+..
T Consensus 86 -~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~~~-- 162 (459)
T 2z83_A 86 -HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPFPD-- 162 (459)
T ss_dssp ---CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC--
T ss_pred -CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhhcc--
Confidence 1122446667766553 3455789999999999985321 111121 123678999999999754221100
Q ss_pred CCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHH
Q 003268 453 FRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQ 532 (835)
Q Consensus 453 ~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~e 532 (835)
...++.... ...+.. ........+. ..+++++|||++++.++.+++.|+.. ++.+..+||+ +
T Consensus 163 -~~~pi~~~~--~~~~~~------~~~~~~~~l~---~~~~~~LVF~~s~~~~~~l~~~L~~~--g~~v~~lh~~----~ 224 (459)
T 2z83_A 163 -SNAPIHDLQ--DEIPDR------AWSSGYEWIT---EYAGKTVWFVASVKMGNEIAMCLQRA--GKKVIQLNRK----S 224 (459)
T ss_dssp -CSSCEEEEE--CCCCSS------CCSSCCHHHH---HCCSCEEEECSCHHHHHHHHHHHHHT--TCCEEEESTT----C
T ss_pred -CCCCeEEec--ccCCcc------hhHHHHHHHH---hcCCCEEEEeCChHHHHHHHHHHHhc--CCcEEecCHH----H
Confidence 011111100 000000 0001112222 24789999999999999999999998 8999999995 6
Q ss_pred HHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEE--------------------ecCCCCCHhHHHHHhcccCCCCC-
Q 003268 533 LEETMEKFAQGAIKILICTNIVESGLDIQNANTIIV--------------------QDVQQFGLAQLYQLRGRVGRADK- 591 (835)
Q Consensus 533 re~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi--------------------~d~p~~sl~~l~Qr~GRaGR~g~- 591 (835)
|+.+++.|++|+.+|||||+++++|||+|+ ++||+ ++.|. +.++|+||+||+||.|.
T Consensus 225 R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~-s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 225 YDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI-TSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC-CHHHHHHHHTTSSCCTTC
T ss_pred HHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC-CHHHHHHhccccCCCCCC
Confidence 788999999999999999999999999999 99998 55775 89999999999999997
Q ss_pred ceEEEEEecCC
Q 003268 592 EAHAYLFYPDK 602 (835)
Q Consensus 592 ~G~ay~l~~~~ 602 (835)
.|.||+|+++.
T Consensus 303 ~G~~~~~~~~~ 313 (459)
T 2z83_A 303 VGDEYHYGGAT 313 (459)
T ss_dssp CCEEEEECSCC
T ss_pred CCeEEEEEccc
Confidence 99999999875
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6e-33 Score=327.85 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=188.7
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
+.+++++||||||||++|..+++. ++.+++|++|||+||.|+++++.+.++ ..++...|+..
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g----~~vg~~vG~~~----------- 293 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHG----IDPNIRTGVRT----------- 293 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHS----CCCEEECSSCE-----------
T ss_pred CCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhC----CCeeEEECcEe-----------
Confidence 578999999999999999888765 477999999999999999999887663 45666666543
Q ss_pred hcCCcceEecchHhhhcc--cccccccEEEeccccccchhhH---HHHH-hhcCCce--EEEeecCCChhhHHHHHhcCC
Q 003268 383 KHGHLNIIVGTHSLLGSR--VVYNNLGLLVVDEEQRFGVKQK---EKIA-SFKISVD--VLTLSATPIPRTLYLALTGFR 454 (835)
Q Consensus 383 ~~g~~dIIIgT~~~L~~~--l~~~~l~lVIIDEaHr~g~~~~---e~l~-~~~~~~~--vL~lSATp~p~tl~~~~~~~~ 454 (835)
..+..+|+|+||++|... +.++++++|||||+|.+..... ..+. ......+ +++||||+++... ..
T Consensus 294 ~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~ 367 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VP 367 (666)
T ss_dssp ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CC
T ss_pred ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cC
Confidence 235689999999998653 4567899999999998755432 2222 2333333 6778999976311 11
Q ss_pred CcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHH
Q 003268 455 DASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLE 534 (835)
Q Consensus 455 d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere 534 (835)
.+............+. ....... .....++++|||||+++.++.+++.|++. ++.+..+||+|++.+
T Consensus 368 ~p~i~~v~~~~~~~i~-~~~~~~~--------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~--g~~v~~lHG~l~q~e-- 434 (666)
T 3o8b_A 368 HPNIEEVALSNTGEIP-FYGKAIP--------IEAIRGGRHLIFCHSKKKCDELAAKLSGL--GINAVAYYRGLDVSV-- 434 (666)
T ss_dssp CTTEEEEECBSCSSEE-ETTEEEC--------GGGSSSSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECTTSCGGG--
T ss_pred CcceEEEeecccchhH-HHHhhhh--------hhhccCCcEEEEeCCHHHHHHHHHHHHhC--CCcEEEecCCCCHHH--
Confidence 1111100000000010 0000000 01225789999999999999999999987 899999999999864
Q ss_pred HHHHHhhcCCeeEEEECCcCccCCCCCCcCEEE----------Eec-----------CCCCCHhHHHHHhcccCCCCCce
Q 003268 535 ETMEKFAQGAIKILICTNIVESGLDIQNANTII----------VQD-----------VQQFGLAQLYQLRGRVGRADKEA 593 (835)
Q Consensus 535 ~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VI----------i~d-----------~p~~sl~~l~Qr~GRaGR~g~~G 593 (835)
|.++..+|||||+++++|||+| +++|| +|| .|. +.++|+||+||+|| |+.|
T Consensus 435 -----r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~-s~~syiQRiGRtGR-g~~G 506 (666)
T 3o8b_A 435 -----IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ-DAVSRSQRRGRTGR-GRRG 506 (666)
T ss_dssp -----SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC-BHHHHHHHHTTBCS-SSCE
T ss_pred -----HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC-CHHHHHHHhccCCC-CCCC
Confidence 5566779999999999999998 99999 455 564 78999999999999 8999
Q ss_pred EEEEEecCCCcCC
Q 003268 594 HAYLFYPDKSLLS 606 (835)
Q Consensus 594 ~ay~l~~~~~~~~ 606 (835)
. |.|+++.+...
T Consensus 507 ~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 507 I-YRFVTPGERPS 518 (666)
T ss_dssp E-EEESCCCCBCS
T ss_pred E-EEEEecchhhc
Confidence 9 99998876543
No 52
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.3e-33 Score=330.01 Aligned_cols=276 Identities=18% Similarity=0.202 Sum_probs=197.3
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
-.++|+|..+++.++ .++|+|+++|||||||++|+++++..+ ..+.+++|++||++||.|+++.+.
T Consensus 170 ~~~lpiq~~~i~~l~-------~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~------ 236 (618)
T 2whx_A 170 RIGEPDYEVDEDIFR-------KKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR------ 236 (618)
T ss_dssp CCCCCCCCCCGGGGS-------TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------
T ss_pred ccCCCccccCHHHHh-------cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc------
Confidence 467888877655543 268999999999999999988887654 457799999999999999998775
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc----ccccccccEEEeccccccchh---hHHHHHhh--c
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS----RVVYNNLGLLVVDEEQRFGVK---QKEKIASF--K 429 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~----~l~~~~l~lVIIDEaHr~g~~---~~e~l~~~--~ 429 (835)
+..+.+..+... ........+.+.|++.+.. ...+.++++|||||||++... ....+... +
T Consensus 237 -~~~v~~~~~~l~---------~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~ 306 (618)
T 2whx_A 237 -GLPIRYQTPAVK---------SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM 306 (618)
T ss_dssp -TSCEEECCTTSS---------CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH
T ss_pred -CCceeEecccce---------eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc
Confidence 234443322110 1112224455667665532 344789999999999998432 22333322 2
Q ss_pred CCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEEEecCccChHHHH
Q 003268 430 ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEPM 509 (835)
Q Consensus 430 ~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~ 509 (835)
.+.++++||||+++....+.. .+...+... ..+.......+...+ ...++++||||++++.++.++
T Consensus 307 ~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~--------~~~~~~~~~~ll~~l---~~~~~~~LVF~~s~~~a~~l~ 372 (618)
T 2whx_A 307 GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIE--------REIPERSWNTGFDWI---TDYQGKTVWFVPSIKAGNDIA 372 (618)
T ss_dssp TSCEEEEECSSCTTCCCSSCC---CSSCEEEEE--------CCCCSSCCSSSCHHH---HHCCSCEEEECSSHHHHHHHH
T ss_pred cCccEEEEECCCchhhhhhhc---cCCceeeec--------ccCCHHHHHHHHHHH---HhCCCCEEEEECChhHHHHHH
Confidence 678999999999665321111 111111111 000000001122222 235789999999999999999
Q ss_pred HHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEE--------------------EEe
Q 003268 510 DFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTI--------------------IVQ 569 (835)
Q Consensus 510 ~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~V--------------------Ii~ 569 (835)
+.|... ++.+..+||+ +|+++++.|++|+.+|||||+++++|||+| +++| |++
T Consensus 373 ~~L~~~--g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~ 445 (618)
T 2whx_A 373 NCLRKS--GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAG 445 (618)
T ss_dssp HHHHHT--TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEE
T ss_pred HHHHHc--CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcc
Confidence 999998 8899999985 688899999999999999999999999998 9988 555
Q ss_pred cCCCCCHhHHHHHhcccCCCC-CceEEEEEec
Q 003268 570 DVQQFGLAQLYQLRGRVGRAD-KEAHAYLFYP 600 (835)
Q Consensus 570 d~p~~sl~~l~Qr~GRaGR~g-~~G~ay~l~~ 600 (835)
+.|. +.++|+||+||+||.| +.|.||+|++
T Consensus 446 d~P~-s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 446 PIPV-TPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEC-CHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cccC-CHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 6665 8999999999999996 5899999997
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=9.6e-32 Score=320.29 Aligned_cols=299 Identities=18% Similarity=0.195 Sum_probs=210.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhh-----cCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLT-----ERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLA 344 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~-----~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La 344 (835)
+.......||+..++.|.++|..+..... ..-.+++++++||||||||+.++..+.. .++.+|++||++||
T Consensus 117 f~~~~~~~fp~~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~----~~~gl~l~PtR~LA 192 (677)
T 3rc3_A 117 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFS----AKSGVYCGPLKLLA 192 (677)
T ss_dssp HHHHHHHHCGGGGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH----SSSEEEEESSHHHH
T ss_pred HHHHHHhhCCCcCCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh----cCCeEEEeCHHHHH
Confidence 55667788999889999999854321100 0113578999999999999965555443 35569999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcC-CcceEecchHhhhcccccccccEEEeccccccch----
Q 003268 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGV---- 419 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g-~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~---- 419 (835)
.|+++++++. |+.|++++|+..... .+.| ..+++++|++.+. ....+++|||||+|+++.
T Consensus 193 ~Qi~~~l~~~-----g~~v~lltG~~~~iv-------~TpGr~~~il~~T~e~~~---l~~~v~lvVIDEaH~l~d~~~g 257 (677)
T 3rc3_A 193 HEIFEKSNAA-----GVPCDLVTGEERVTV-------QPNGKQASHVSCTVEMCS---VTTPYEVAVIDEIQMIRDPARG 257 (677)
T ss_dssp HHHHHHHHHT-----TCCEEEECSSCEECC-------STTCCCCSEEEEEGGGCC---SSSCEEEEEECSGGGGGCTTTH
T ss_pred HHHHHHHHhc-----CCcEEEEECCeeEEe-------cCCCcccceeEecHhHhh---hcccCCEEEEecceecCCccch
Confidence 9999999873 678999988643300 0011 2567777776543 246789999999998642
Q ss_pred -hhHHHHHhhc-CCceEEEeecCCChhhHHHHHhcCCCcceeeCCCCCccceeEEecccCHHHHHHHHHHHHhcCCeEEE
Q 003268 420 -KQKEKIASFK-ISVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERLPIKTHLSAFSKEKVISAIKYELDRGGQVFY 497 (835)
Q Consensus 420 -~~~e~l~~~~-~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~~r~~V~~~~~~~~~~~~~~~i~~~l~~ggqvlV 497 (835)
.....+..+. ...+++++|||. +....+....-....+.... ...+........ ..+.. + ..++ +|
T Consensus 258 ~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~~~~~~v~~~~--r~~~l~~~~~~l------~~l~~-~-~~g~-iI 325 (677)
T 3rc3_A 258 WAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTTGEEVEVRDYK--RLTPISVLDHAL------ESLDN-L-RPGD-CI 325 (677)
T ss_dssp HHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHHTCCEEEEECC--CSSCEEECSSCC------CSGGG-C-CTTE-EE
T ss_pred HHHHHHHHccCccceEEEeccchH-HHHHHHHHhcCCceEEEEee--ecchHHHHHHHH------HHHHh-c-CCCC-EE
Confidence 3334455555 678999999994 32222222211222222111 111111100000 00000 1 2344 67
Q ss_pred EecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhc--CCeeEEEECCcCccCCCCCCcCEEEEecCCC--
Q 003268 498 VLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQ--GAIKILICTNIVESGLDIQNANTIIVQDVQQ-- 573 (835)
Q Consensus 498 f~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~--g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~-- 573 (835)
||+++++++.+++.|.+. ++.+.++||+|++.+|+.+++.|++ |.++|||||+++++|||+ ++++||+++.++
T Consensus 326 f~~s~~~ie~la~~L~~~--g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 326 VCFSKNDIYSVSRQIEIR--GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp ECSSHHHHHHHHHHHHHT--TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEcCHHHHHHHHHHHHhc--CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 799999999999999987 8899999999999999999999999 889999999999999999 799999999843
Q ss_pred -----------CCHhHHHHHhcccCCCCC---ceEEEEEecCC
Q 003268 574 -----------FGLAQLYQLRGRVGRADK---EAHAYLFYPDK 602 (835)
Q Consensus 574 -----------~sl~~l~Qr~GRaGR~g~---~G~ay~l~~~~ 602 (835)
++.++|+||+|||||.|. .|.||++++.+
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 378999999999999995 48999987653
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=3.1e-30 Score=297.67 Aligned_cols=304 Identities=17% Similarity=0.205 Sum_probs=213.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
+...|+|+|.++++.+..... .+.+.|++++||+|||.+++..+...... ..++||+||+ .|+.||.+++.. |
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~---~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~-~ 108 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNK---LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSK-F 108 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHH---TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHH-H
T ss_pred hhccchHHHHHHHHHHHHHhh---CCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHH-H
Confidence 446899999999988764321 24679999999999999987766655443 3689999995 588999999987 4
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc--cccccEEEeccccccchh---hHHHHHhhcC
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV--YNNLGLLVVDEEQRFGVK---QKEKIASFKI 430 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~--~~~l~lVIIDEaHr~g~~---~~e~l~~~~~ 430 (835)
. |+.++.++++.... ...+..+|+|+|++.+..... ..++++||+||||++... ....+..+ .
T Consensus 109 ~--~~~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~ 176 (500)
T 1z63_A 109 A--PHLRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-K 176 (500)
T ss_dssp C--TTSCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-C
T ss_pred C--CCceEEEEecCchh---------ccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh-c
Confidence 3 35778888775421 112458999999999976533 356899999999998432 23445444 4
Q ss_pred CceEEEeecCCChhhHHHHH---hc---------------------------------CCCcceee-----------CCC
Q 003268 431 SVDVLTLSATPIPRTLYLAL---TG---------------------------------FRDASLIS-----------TPP 463 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~---~~---------------------------------~~d~s~i~-----------~~p 463 (835)
....+++||||......... .. +..+.++. .|+
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCC
Confidence 46789999999764321110 00 00000110 111
Q ss_pred CCccceeEEecccCH-----------------------------------------------------------HHHHHH
Q 003268 464 PERLPIKTHLSAFSK-----------------------------------------------------------EKVISA 484 (835)
Q Consensus 464 ~~r~~V~~~~~~~~~-----------------------------------------------------------~~~~~~ 484 (835)
.....+ . ...+. ..+.+.
T Consensus 257 ~~~~~v--~-~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 257 KIETNV--Y-CNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp EEEEEE--E-ECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CeEEEE--E-cCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 100000 0 11110 011233
Q ss_pred HHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC-Cee-EEEECCcCccCCCCCC
Q 003268 485 IKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESGLDIQN 562 (835)
Q Consensus 485 i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g-~~~-VLVaT~iie~GIDIp~ 562 (835)
+.+....+.+++|||+.+..++.+++.|.... +..+..+||+++..+|+++++.|+++ ..+ +|+||+++++|+|+|+
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH-TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhh-CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 34444578899999999999999999998742 67788999999999999999999998 555 7999999999999999
Q ss_pred cCEEEEecCCCCCHhHHHHHhcccCCCCCc--eEEEEEecCCC
Q 003268 563 ANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKS 603 (835)
Q Consensus 563 v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~~ 603 (835)
+++||++|++ |++..+.|++||++|.|+. ..+|.++...+
T Consensus 413 ~~~vi~~d~~-~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 413 ANRVIHFDRW-WNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp CSEEEESSCC-SCC---CHHHHTTTTTTTTSCEEEEEEEETTS
T ss_pred CCEEEEeCCC-CCcchHHHHHHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999998 6999999999999999954 55677887764
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=6.5e-27 Score=278.97 Aligned_cols=317 Identities=17% Similarity=0.214 Sum_probs=218.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcC--CCCCcEEEEccCCCccHHHHHHHHHHHHhCC-------CEEEEEcccHHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTER--ETPMDRLICGDVGFGKTEVALRAIFCVVSAG-------KQAMVLAPTIVLAKQHFDV 350 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~--~~~~d~LI~g~TGsGKT~val~a~~~~~~~g-------~qvlVLvPtr~La~Q~~~~ 350 (835)
..|+|+|.+++..+....... ..+...|++.+||+|||.+++..+......+ +++||++|+ .|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 479999999999987643211 2356789999999999999887776655432 468999997 788999999
Q ss_pred HHHhhcCCCCcEEEEecCCCCHHHHHHHHHhH-hc----CCcceEecchHhhhcc---cccccccEEEeccccccch---
Q 003268 351 VSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI-KH----GHLNIIVGTHSLLGSR---VVYNNLGLLVVDEEQRFGV--- 419 (835)
Q Consensus 351 ~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l-~~----g~~dIIIgT~~~L~~~---l~~~~l~lVIIDEaHr~g~--- 419 (835)
+...+.. .+.+..++++. ..+....+... .. ...+|+|+|++.+... +.-.++++||+||+|++..
T Consensus 133 ~~~~~~~--~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGS-KDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHGG--GCCEEEECSSC-HHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHcCC--CeeEEEEeCCC-HHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhh
Confidence 9875543 35566666543 22322223222 22 1478999999988653 2335789999999999843
Q ss_pred hhHHHHHhhcCCceEEEeecCCChhhHHH-------H-----------Hh------------------------------
Q 003268 420 KQKEKIASFKISVDVLTLSATPIPRTLYL-------A-----------LT------------------------------ 451 (835)
Q Consensus 420 ~~~e~l~~~~~~~~vL~lSATp~p~tl~~-------~-----------~~------------------------------ 451 (835)
.....+..+ .....++|||||+.+.+.. . ..
T Consensus 210 ~~~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~ 288 (644)
T 1z3i_X 210 QTYLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288 (644)
T ss_dssp HHHHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHH
Confidence 233445555 3457899999997643110 0 00
Q ss_pred ------cCCCc-cee--eCCCCCccceeEEecc-----------------------------------------------
Q 003268 452 ------GFRDA-SLI--STPPPERLPIKTHLSA----------------------------------------------- 475 (835)
Q Consensus 452 ------~~~d~-s~i--~~~p~~r~~V~~~~~~----------------------------------------------- 475 (835)
.++.. ..+ ..|+.....+...+..
T Consensus 289 ~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~ 368 (644)
T 1z3i_X 289 SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE 368 (644)
T ss_dssp HHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHH
Confidence 00000 000 0111000000000000
Q ss_pred ----------------------------cC-HHHHHHHHHHHH--hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEE
Q 003268 476 ----------------------------FS-KEKVISAIKYEL--DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIA 524 (835)
Q Consensus 476 ----------------------------~~-~~~~~~~i~~~l--~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~l 524 (835)
.+ +..++..+...+ ..+.+++||++....++.+...|... ++.+..+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~--g~~~~~l 446 (644)
T 1z3i_X 369 KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR--RYLYVRL 446 (644)
T ss_dssp HHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH--TCCEEEE
T ss_pred HHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC--CCCEEEE
Confidence 00 001222233333 24689999999999999999999988 8899999
Q ss_pred cCCCCHHHHHHHHHHhhcCCe---eEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCC--ceEEEEEe
Q 003268 525 HGQQYSRQLEETMEKFAQGAI---KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADK--EAHAYLFY 599 (835)
Q Consensus 525 HG~m~~~ere~vl~~F~~g~~---~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~--~G~ay~l~ 599 (835)
||+++..+|+++++.|+++.. .+|++|.++++|||++++++||++|++ |+++.+.|++||++|.|+ ...+|.|+
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~-wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD-WNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC-SSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCC-CCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 999999999999999999865 489999999999999999999999998 699999999999999995 46778888
Q ss_pred cCCCc
Q 003268 600 PDKSL 604 (835)
Q Consensus 600 ~~~~~ 604 (835)
+...+
T Consensus 526 ~~~ti 530 (644)
T 1z3i_X 526 STGTI 530 (644)
T ss_dssp ETTSH
T ss_pred ECCCH
Confidence 87754
No 56
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.7e-28 Score=292.77 Aligned_cols=314 Identities=15% Similarity=0.202 Sum_probs=220.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH---hCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV---SAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~---~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.+|+|+|.+++..++..+. .+.+.|++.+||+|||.+++..+.... ...+.+||+|| ..|+.||.++|.. +.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~---~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~-~~ 309 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWS---KGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEK-WA 309 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHT---TTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHH-HS
T ss_pred CCcCHHHHHHHHHHHHHhh---cCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHH-HC
Confidence 4899999999998876442 356899999999999999876665432 34578999999 5678899999987 43
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHh--------HhcCCcceEecchHhhhccc---ccccccEEEeccccccc---hhhH
Q 003268 357 KYPDIKVGLLSRFQSKAEKEEHLDM--------IKHGHLNIIVGTHSLLGSRV---VYNNLGLLVVDEEQRFG---VKQK 422 (835)
Q Consensus 357 ~~~gi~V~~l~g~~s~~e~~~~l~~--------l~~g~~dIIIgT~~~L~~~l---~~~~l~lVIIDEaHr~g---~~~~ 422 (835)
|++++.+++|............. ...+.++|+|+|++.+.... .-.++++|||||||++. ....
T Consensus 310 --p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~ 387 (800)
T 3mwy_W 310 --PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLY 387 (800)
T ss_dssp --TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHH
T ss_pred --CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchhHHH
Confidence 46888888886543332222111 23356899999999887542 22468899999999983 2333
Q ss_pred HHHHhhcCCceEEEeecCCChhhHHHH---HhcC------------------------------CCcceee---------
Q 003268 423 EKIASFKISVDVLTLSATPIPRTLYLA---LTGF------------------------------RDASLIS--------- 460 (835)
Q Consensus 423 e~l~~~~~~~~vL~lSATp~p~tl~~~---~~~~------------------------------~d~s~i~--------- 460 (835)
..+..+ .....++|||||....+... +..+ ..+.++.
T Consensus 388 ~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 388 ESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 444444 44567889999964332110 0000 0000000
Q ss_pred CCCCCccceeEEecc-----------------------------------------------------------------
Q 003268 461 TPPPERLPIKTHLSA----------------------------------------------------------------- 475 (835)
Q Consensus 461 ~~p~~r~~V~~~~~~----------------------------------------------------------------- 475 (835)
.|+.....+...+..
T Consensus 467 LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~ 546 (800)
T 3mwy_W 467 LPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTREN 546 (800)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHH
T ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHH
Confidence 111000000000000
Q ss_pred --------cCHH-HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCe-
Q 003268 476 --------FSKE-KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAI- 545 (835)
Q Consensus 476 --------~~~~-~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~- 545 (835)
..+- .+...+......+.+++||+.....++.+...|... ++.+..+||+++..+|+.+++.|+++..
T Consensus 547 ~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 547 VLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK--GINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH--TCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 0000 111222223346789999999999999999999988 8999999999999999999999998654
Q ss_pred --eEEEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCC--CceEEEEEecCCCc
Q 003268 546 --KILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRAD--KEAHAYLFYPDKSL 604 (835)
Q Consensus 546 --~VLVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g--~~G~ay~l~~~~~~ 604 (835)
.+|++|.+++.|||++.+++||++|++ |++..+.|++||++|.| +...+|.|++..++
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSD-WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCC-SCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred ceEEEEecccccCCCCccccceEEEecCC-CChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 499999999999999999999999998 79999999999999998 45778889988765
No 57
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.95 E-value=2.7e-26 Score=268.24 Aligned_cols=306 Identities=18% Similarity=0.214 Sum_probs=220.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 274 FAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 274 ~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
-.......|++.|.-+.-.+.. | .|....||+|||++|.+|++.....|+.|.|++|+..||.|-++.+..
T Consensus 68 a~R~lg~r~~dvQligg~~L~~-------G--~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 68 ARRTLGMRPFDVQVMGGIALHE-------G--KVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp HHHHTSCCCCHHHHHHHHHHHT-------T--CEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHHHHhC-------C--ChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHH
Confidence 3445667889999988765532 2 399999999999999999886667799999999999999999999987
Q ss_pred hhcCCCCcEEEEecC--------------------------------------------------CCCHHHHHHHHHhHh
Q 003268 354 RFSKYPDIKVGLLSR--------------------------------------------------FQSKAEKEEHLDMIK 383 (835)
Q Consensus 354 ~f~~~~gi~V~~l~g--------------------------------------------------~~s~~e~~~~l~~l~ 383 (835)
.+. +.|++|+++.. ..+..++...+
T Consensus 139 l~~-~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY---- 213 (822)
T 3jux_A 139 VYL-FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY---- 213 (822)
T ss_dssp HHH-HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH----
T ss_pred HHH-HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh----
Confidence 554 45899999887 22334444444
Q ss_pred cCCcceEecchHhh-----hccc-------ccccccEEEecccccc----------------------------------
Q 003268 384 HGHLNIIVGTHSLL-----GSRV-------VYNNLGLLVVDEEQRF---------------------------------- 417 (835)
Q Consensus 384 ~g~~dIIIgT~~~L-----~~~l-------~~~~l~lVIIDEaHr~---------------------------------- 417 (835)
.+||++||..-+ .+.+ ..+.+.+.||||+|.+
T Consensus 214 --~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~ 291 (822)
T 3jux_A 214 --LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVK 291 (822)
T ss_dssp --HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCB
T ss_pred --cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCc
Confidence 379999998644 3322 2356889999999920
Q ss_pred ------------------chhhHHHH----------------------Hhh-----------------------------
Q 003268 418 ------------------GVKQKEKI----------------------ASF----------------------------- 428 (835)
Q Consensus 418 ------------------g~~~~e~l----------------------~~~----------------------------- 428 (835)
|....+.+ +..
T Consensus 292 ~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~g 371 (822)
T 3jux_A 292 DKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPG 371 (822)
T ss_dssp TTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCS
T ss_pred CCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCC
Confidence 00000110 000
Q ss_pred -----------------------------------cCCceEEEeecCCChhhHHHHHhcCCCcceeeCCCC---Ccccee
Q 003268 429 -----------------------------------KISVDVLTLSATPIPRTLYLALTGFRDASLISTPPP---ERLPIK 470 (835)
Q Consensus 429 -----------------------------------~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p~---~r~~V~ 470 (835)
+...++.+||||.......+...+ ++.++.+|+. .+....
T Consensus 372 rr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtnkp~~R~d~~ 449 (822)
T 3jux_A 372 RRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY--GMEVVVIPTHKPMIRKDHD 449 (822)
T ss_dssp CCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS--CCCEEECCCSSCCCCEECC
T ss_pred CcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh--CCeEEEECCCCCcceeecC
Confidence 113568899999866554443333 4445555432 222221
Q ss_pred EEecccCHHHHHHHHHHH----HhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCee
Q 003268 471 THLSAFSKEKVISAIKYE----LDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIK 546 (835)
Q Consensus 471 ~~~~~~~~~~~~~~i~~~----l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~ 546 (835)
..+. .+......++... ...+.++||||++++.++.+++.|... ++.+.++||++.+.++..+...++.| .
T Consensus 450 d~vy-~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~--Gi~~~vLhgkq~~rE~~ii~~ag~~g--~ 524 (822)
T 3jux_A 450 DLVF-RTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK--GIPHQVLNAKYHEKEAEIVAKAGQKG--M 524 (822)
T ss_dssp CEEE-SSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT--TCCCEEECSCHHHHHHHHHHHHHSTT--C
T ss_pred cEEE-ecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC--CCCEEEeeCCchHHHHHHHHhCCCCC--e
Confidence 1222 2333333444333 346789999999999999999999998 89999999996666666666666666 5
Q ss_pred EEEECCcCccCCCCC--------CcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 547 ILICTNIVESGLDIQ--------NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 547 VLVaT~iie~GIDIp--------~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+|||+++++|+||+ +..+||+++.|. +...|.||+||+||.|.+|.+++|++.++
T Consensus 525 VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pe-s~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 525 VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHE-SRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCS-SHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCC-CHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999999999998 566999999997 99999999999999999999999998765
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=1.7e-25 Score=267.26 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=127.9
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceeeCCC-CCccceeEEeccc--CHHHHHHHHHHHHhcCCeEEEEecCccChHH
Q 003268 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p-~~r~~V~~~~~~~--~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~ 507 (835)
..+++++||||.+..... . .........+ ....|.. .+... ....+...+......+.+++|||+++..++.
T Consensus 380 ~~q~i~~SAT~~~~~~~~--~--~~~~~~~~r~~~l~~p~i-~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~ 454 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH--S--GRVVEQIIRPTGLLDPLV-RVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEE 454 (664)
T ss_dssp CSEEEEEESSCCHHHHHH--C--SEEEEECSCTTCCCCCEE-EEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHH
T ss_pred cCCEEEEecCCCHHHHHh--h--hCeeeeeeccCCCCCCeE-EEecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHH
Confidence 567899999997654322 0 1110111111 1112221 11222 2244556666667788999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC----CHhHHHHHh
Q 003268 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----GLAQLYQLR 583 (835)
Q Consensus 508 l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~----sl~~l~Qr~ 583 (835)
+++.|.+. ++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.+.+ +..+|+||+
T Consensus 455 L~~~L~~~--gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~ 532 (664)
T 1c4o_A 455 LTSFLVEH--GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 532 (664)
T ss_dssp HHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHH
T ss_pred HHHHHHhc--CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHH
Confidence 99999998 889999999999999999999999999999999999999999999999999998432 678999999
Q ss_pred cccCCCCCceEEEEEecCCCc
Q 003268 584 GRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~~ 604 (835)
||+||.+ .|.|++++++.+.
T Consensus 533 GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 533 GRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp GGGTTST-TCEEEEECSSCCH
T ss_pred CccCcCC-CCEEEEEEcCCCH
Confidence 9999984 8999999987643
No 59
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=1.2e-26 Score=287.17 Aligned_cols=308 Identities=15% Similarity=0.112 Sum_probs=203.5
Q ss_pred CCCCHHHHHHHHHHHHhhhcC-------CCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTER-------ETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFD 349 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~-------~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~La~Q~~~ 349 (835)
..|+|+|..|++.++..+..+ ..+.+.+++++||||||.+++..+ ..+.. ..++|||+||++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 469999999999998755321 123679999999999999985444 44432 3699999999999999999
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-------cccccccEEEeccccccchh-h
Q 003268 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-------VVYNNLGLLVVDEEQRFGVK-Q 421 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-------l~~~~l~lVIIDEaHr~g~~-~ 421 (835)
+|.. |... .+.+..+... ....+..+..+|+|+|++.|... ..+..+.+||+||||++... .
T Consensus 349 ~f~~-f~~~------~v~~~~s~~~---l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~ 418 (1038)
T 2w00_A 349 EYQR-FSPD------SVNGSENTAG---LKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA 418 (1038)
T ss_dssp HHHT-TSTT------CSSSSCCCHH---HHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH
T ss_pred HHHH-hccc------ccccccCHHH---HHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcchHH
Confidence 9986 5432 1223333333 22334445689999999988642 13567889999999998653 2
Q ss_pred HHHHHhhcCCceEEEeecCCChh--------hHHHH-------------HhcCCCcceeeCCCCC-cc-------c----
Q 003268 422 KEKIASFKISVDVLTLSATPIPR--------TLYLA-------------LTGFRDASLISTPPPE-RL-------P---- 468 (835)
Q Consensus 422 ~e~l~~~~~~~~vL~lSATp~p~--------tl~~~-------------~~~~~d~s~i~~~p~~-r~-------~---- 468 (835)
...+....++.++++|||||... +...+ ..++.-+..+...... .. .
T Consensus 419 ~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~ 498 (1038)
T 2w00_A 419 QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKL 498 (1038)
T ss_dssp HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHH
T ss_pred HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHH
Confidence 44565666778999999999743 21111 0111101000000000 00 0
Q ss_pred --eeEEecccCHH---HHHHHHHHHHh----------cCCeEEEEecCccChHHHHHHHHhhC----------CCCcEE-
Q 003268 469 --IKTHLSAFSKE---KVISAIKYELD----------RGGQVFYVLPRIKGLEEPMDFLQQAF----------PGVDIA- 522 (835)
Q Consensus 469 --V~~~~~~~~~~---~~~~~i~~~l~----------~ggqvlVf~~~v~~ie~l~~~L~~~~----------p~~~V~- 522 (835)
+........+. .+...+..... .+++++|||+++..+..+++.|.+.. ++.+++
T Consensus 499 ~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 499 SAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 00000001111 22222322221 34689999999999999999998764 124564
Q ss_pred EEcCC----------C----------CH-----------------------------HHHHHHHHHhhcCCeeEEEECCc
Q 003268 523 IAHGQ----------Q----------YS-----------------------------RQLEETMEKFAQGAIKILICTNI 553 (835)
Q Consensus 523 ~lHG~----------m----------~~-----------------------------~ere~vl~~F~~g~~~VLVaT~i 553 (835)
++||+ + ++ ..|+.++++|++|+++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 45542 2 22 14788999999999999999999
Q ss_pred CccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCc----eEEEEEec
Q 003268 554 VESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE----AHAYLFYP 600 (835)
Q Consensus 554 ie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~----G~ay~l~~ 600 (835)
+.+|+|+|.+ .++.+|.|. +...|+|++||++|.+.. |.++.|..
T Consensus 659 lltGfDiP~l-~tlylDkpl-~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNL-RYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCC-CHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHhCcCcccc-cEEEEccCC-CccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999 456678774 889999999999998753 77776654
No 60
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.2e-24 Score=259.97 Aligned_cols=165 Identities=20% Similarity=0.309 Sum_probs=128.3
Q ss_pred CceEEEeecCCChhhHHHHHhcCCCcceeeCCC-CCccceeEEeccc--CHHHHHHHHHHHHhcCCeEEEEecCccChHH
Q 003268 431 SVDVLTLSATPIPRTLYLALTGFRDASLISTPP-PERLPIKTHLSAF--SKEKVISAIKYELDRGGQVFYVLPRIKGLEE 507 (835)
Q Consensus 431 ~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~p-~~r~~V~~~~~~~--~~~~~~~~i~~~l~~ggqvlVf~~~v~~ie~ 507 (835)
..+++++||||.+..... . .........+ ....|. ..+... ....+...+...+..+++++|||+++..++.
T Consensus 386 ~~q~i~~SAT~~~~~~~~--~--~~~~~~~~r~~~l~~p~-i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~ 460 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH--T--DEMVEQIIRPTGLLDPL-IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSED 460 (661)
T ss_dssp CSEEEEECSSCCHHHHHH--C--SSCEEECCCTTCCCCCE-EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred CCCEEEEecCCChhHHHh--h--hCeeeeeecccCCCCCe-EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHH
Confidence 568899999997654322 1 1111111111 111222 112222 2244556666667778999999999999999
Q ss_pred HHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEecCCCC----CHhHHHHHh
Q 003268 508 PMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQF----GLAQLYQLR 583 (835)
Q Consensus 508 l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d~p~~----sl~~l~Qr~ 583 (835)
+++.|.+. ++.+..+||++++.+|..++++|++|+++|||||+++++|+|+|++++||+++.+.| +..+|+||+
T Consensus 461 L~~~L~~~--gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~ 538 (661)
T 2d7d_A 461 LTDYLKEI--GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI 538 (661)
T ss_dssp HHHHHHHT--TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHH
T ss_pred HHHHHHhc--CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHh
Confidence 99999998 889999999999999999999999999999999999999999999999999998422 679999999
Q ss_pred cccCCCCCceEEEEEecCCC
Q 003268 584 GRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 584 GRaGR~g~~G~ay~l~~~~~ 603 (835)
||+||. ..|.|++|+++.+
T Consensus 539 GRagR~-~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 539 GRAARN-AEGRVIMYADKIT 557 (661)
T ss_dssp HTTTTS-TTCEEEEECSSCC
T ss_pred CcccCC-CCCEEEEEEeCCC
Confidence 999998 7899999998764
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.91 E-value=1.8e-23 Score=218.73 Aligned_cols=185 Identities=23% Similarity=0.172 Sum_probs=146.6
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh--------CCCEEEE
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS--------AGKQAMV 336 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~--------~g~qvlV 336 (835)
+.++ +.+.+.+.+...|||+|.+|++.++. ++|+++++|||||||++|+.|++..+. .+.+++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 35 NFPANVMDVIARQNFTEPTAIQAQGWPVALS-------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHH-------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 3455 67777776666899999999999875 478999999999999999999987764 3678999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEe
Q 003268 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVII 411 (835)
++||++|+.|+++.++..... .++++..++|+.+....... +..+ ++|+|+||+.|.+ ...+.++++||+
T Consensus 108 l~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRD---LERG-VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp ECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred EeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHH---hcCC-CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 999999999999999874443 37899999998877654433 3344 8999999998864 345789999999
Q ss_pred ccccccch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCC
Q 003268 412 DEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 412 DEaHr~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~ 462 (835)
||+|++.. .....+..++++.++++||||+++.....+...+.++..|...
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99998632 2233445556789999999999888888888888877766554
No 62
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=215.84 Aligned_cols=177 Identities=23% Similarity=0.251 Sum_probs=137.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---------CCCEEEEEccc
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---------AGKQAMVLAPT 340 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---------~g~qvlVLvPt 340 (835)
+.+.+.+.+...|||+|.+|++.+++ ++|+++++|||||||++|+.+++..+. .+.+++|++||
T Consensus 31 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 31 LLKSIIRVGILKPTPIQSQAWPIILQ-------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 67788888778999999999999874 478999999999999999999887653 46789999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++|+.|+++++.. +.. .++++..++|+.+..... ..+..+ ++|+|+||+.|.+ ...+.++++||+||||
T Consensus 104 ~~L~~q~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~---~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 177 (228)
T 3iuy_A 104 RELALHVEAECSK-YSY-KGLKSICIYGGRNRNGQI---EDISKG-VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD 177 (228)
T ss_dssp HHHHHHHHHHHHH-HCC-TTCCEEEECC------CH---HHHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH
T ss_pred HHHHHHHHHHHHH-hcc-cCceEEEEECCCChHHHH---HHhcCC-CCEEEECHHHHHHHHHcCCcCcccceEEEEECHH
Confidence 9999999999987 543 368888888876554432 333344 8999999998864 3457889999999999
Q ss_pred ccch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCccee
Q 003268 416 RFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 459 (835)
Q Consensus 416 r~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i 459 (835)
++.. .....+....++.++++||||+++.....+...+.++..+
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 226 (228)
T 3iuy_A 178 KMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226 (228)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred HHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEE
Confidence 8532 2234455667789999999999888888887777766544
No 63
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=3.7e-23 Score=212.60 Aligned_cols=189 Identities=19% Similarity=0.137 Sum_probs=147.2
Q ss_pred CCCCCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEE
Q 003268 261 KRPPYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMV 336 (835)
Q Consensus 261 ~~~~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlV 336 (835)
.+..++.++ +.+.+.+.+...|+|+|.+|++.+++ ++|+++++|||+|||++|+.+++..+.. +.+++|
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~li 87 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV 87 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEE
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEE
Confidence 344566666 77888776666799999999999874 3689999999999999999999887654 358999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEe
Q 003268 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 337 LvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVII 411 (835)
++||++|+.|++++++......+++++..++|+.+..... ..+..+.++|+|+||+.+.. .+.+.++++||+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 9999999999999998754444578999999987765543 33445668999999998753 345788999999
Q ss_pred ccccccch--h---hHH-HHHhhcCCceEEEeecCCChhhHHHHHhcCCCccee
Q 003268 412 DEEQRFGV--K---QKE-KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLI 459 (835)
Q Consensus 412 DEaHr~g~--~---~~e-~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i 459 (835)
||+|++.. . ... .+.....+.+++++|||+++....++...+.++..+
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 99998732 1 122 233445688999999999888777777777766554
No 64
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=1.6e-22 Score=240.33 Aligned_cols=126 Identities=20% Similarity=0.167 Sum_probs=104.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 276 AQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 276 ~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
....+.|||+|..+++.+++ |. |.++.||+|||++|.+|++.....|.+|+|++||++||.|+++.+...+
T Consensus 74 R~lG~~Pt~VQ~~~ip~Llq-------G~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 74 RYLGMRHFDVQLIGGAVLHE-------GK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHTCCCCCHHHHHHHHHHHT-------TS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHhhcccccC-------Cc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34667999999999998864 23 9999999999999999997666678999999999999999999999855
Q ss_pred cCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhh-----cc-------cccc---cccEEEecccccc
Q 003268 356 SKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLG-----SR-------VVYN---NLGLLVVDEEQRF 417 (835)
Q Consensus 356 ~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~-----~~-------l~~~---~l~lVIIDEaHr~ 417 (835)
.+.|++|+++.|+.+..++.... + +||+||||+.|. +. +.++ +++++||||+|++
T Consensus 145 -~~lGLsv~~i~Gg~~~~~r~~ay-----~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsm 214 (997)
T 2ipc_A 145 -RGLGLSVGVIQHASTPAERRKAY-----L-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSI 214 (997)
T ss_dssp -HTTTCCEEECCTTCCHHHHHHHH-----T-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHH
T ss_pred -HhcCCeEEEEeCCCCHHHHHHHc-----C-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHH
Confidence 45589999999998865544332 3 899999999882 22 4567 8999999999963
No 65
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=218.82 Aligned_cols=175 Identities=25% Similarity=0.272 Sum_probs=139.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-------CCCEEEEEcccHH
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-------AGKQAMVLAPTIV 342 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-------~g~qvlVLvPtr~ 342 (835)
+.+.+.+.+...|+|+|.+|++.++. ++|+++++|||||||++|+++++..+. .+.+++|++||++
T Consensus 65 l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~ 137 (262)
T 3ly5_A 65 TLKAIKEMGFTNMTEIQHKSIRPLLE-------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRE 137 (262)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHH-------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHH
Confidence 77778777666899999999999875 368999999999999999999987653 4788999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEeccccc
Q 003268 343 LAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 343 La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDEaHr 416 (835)
|+.|+++.++..+... ++.+..+.|+...... ...+..+ ++|+|+||+.+.. .+.+.++++|||||||+
T Consensus 138 La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~---~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 138 LAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAE---AQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp HHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHH---HHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred HHHHHHHHHHHHHhhc-CceEEEEECCCCHHHH---HHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 9999999999855444 6889999998766543 3344445 8999999998753 24578899999999998
Q ss_pred cc---h--hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCc
Q 003268 417 FG---V--KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDA 456 (835)
Q Consensus 417 ~g---~--~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~ 456 (835)
+. + .....+..++...++++||||+++....++...+.+.
T Consensus 213 l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 213 ILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 53 2 2233445556789999999999998887777666543
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.90 E-value=8e-23 Score=212.53 Aligned_cols=184 Identities=23% Similarity=0.256 Sum_probs=143.6
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-------hCCCEEEE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-------SAGKQAMV 336 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-------~~g~qvlV 336 (835)
++.++ +.+.+...+...|+|+|.+|++.++. ++|+++++|||||||++|+.+++..+ ..+.+++|
T Consensus 30 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 30 FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQ-------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp SCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 45555 77888887778999999999999874 47899999999999999999988765 34778999
Q ss_pred EcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEE
Q 003268 337 LAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLV 410 (835)
Q Consensus 337 LvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVI 410 (835)
++||++|+.|+++.++. +....++++..++|+.+.......+ +.++|+|+||+.|.+ ...+.++++||
T Consensus 103 l~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRK-VGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp ECSSHHHHHHHHHHHHH-HTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred EeCCHHHHHHHHHHHHH-HhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 99999999999999987 4444468899999987655443333 358999999998853 24567899999
Q ss_pred eccccccc---h-hh-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeC
Q 003268 411 VDEEQRFG---V-KQ-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 411 IDEaHr~g---~-~~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~ 461 (835)
+||+|++. + .. ...+..++.+.++++||||+++....++...+.++..+..
T Consensus 177 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred EeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 99999863 2 22 2334455668899999999998888888887777766654
No 67
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.90 E-value=7.2e-23 Score=212.58 Aligned_cols=185 Identities=20% Similarity=0.171 Sum_probs=142.3
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPt 340 (835)
++.++ +.+.+.+.+...|+|+|.+|++.++. ++|+++++|||+|||++|+.+++..+. .+.+++|++||
T Consensus 29 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 29 LLLSRPVLEGLRAAGFERPSPVQLKAIPLGRC-------GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 34555 77777776666799999999999864 478999999999999999999887753 35799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++|+.|++++++......+++++..++|+.+..+....+ ..++|+|+||+.|.+ .+.+.++++||+||+|
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 176 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch
Confidence 999999999998754444578999999987766543332 248999999998854 3456789999999999
Q ss_pred ccc----h-hhHH-HHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeC
Q 003268 416 RFG----V-KQKE-KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 416 r~g----~-~~~e-~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~ 461 (835)
++. + .... .+..++...+++++|||+++.........+.++..+..
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 962 2 1222 34445568899999999987766666666666655543
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=8.7e-23 Score=207.21 Aligned_cols=183 Identities=16% Similarity=0.104 Sum_probs=142.1
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPt 340 (835)
++.++ +.+.+.+.+...|+|+|.+|++.++. ++|+++++|||+|||++|+.+++..+.. +.+++|++||
T Consensus 8 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 8 YCLKRELLMGIFEMGWEKPSPIQEESIPIALS-------GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp SCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHT-------TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHcc-------CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 45566 77888777667999999999999874 4789999999999999999999877543 5689999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++|+.|+++.+...+...+++++..++|+.+..+.. ..+. +.++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 81 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT-SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC-CCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 999999999998855555578899999987765432 2233 458999999998753 2456789999999999
Q ss_pred ccch----hhH-HHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcce
Q 003268 416 RFGV----KQK-EKIASFKISVDVLTLSATPIPRTLYLALTGFRDASL 458 (835)
Q Consensus 416 r~g~----~~~-e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~ 458 (835)
++.. ... ..+..++.+.+++++|||+++....+....+.++..
T Consensus 157 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 157 KLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp HHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred HhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeE
Confidence 8632 122 233444568899999999988877777766665543
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.90 E-value=4.5e-23 Score=215.23 Aligned_cols=186 Identities=22% Similarity=0.183 Sum_probs=138.2
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPt 340 (835)
++.++ +.+.+...+...|+|+|.+|++.+++ ++|+++++|||||||++|+.+++..+. .+.+++|++||
T Consensus 35 l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~-------~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 35 MNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK-------GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp SCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 34555 67777776666899999999999874 468999999999999999999988764 45799999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEecccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaH 415 (835)
++|+.|+++.++. +....++.+..+.|+.+... .+..+..+.++|+|+||+.|.+ .+.+.++++||+||||
T Consensus 108 ~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 108 RELAQQIQKVILA-LGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp HHHHHHHHHHHHH-HTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred HHHHHHHHHHHHH-HhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 9999999999987 55444688888888755433 3445556679999999988753 2456789999999999
Q ss_pred ccch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeC
Q 003268 416 RFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 416 r~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~ 461 (835)
++.. .....+..+....+++++|||+++....++...+.++..+..
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 8632 123334555678999999999998888877777777665543
No 70
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.90 E-value=6.7e-23 Score=210.87 Aligned_cols=187 Identities=22% Similarity=0.215 Sum_probs=144.3
Q ss_pred CCCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcc
Q 003268 264 PYPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAP 339 (835)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvP 339 (835)
.++.++ +.+.+.+.+...|+|+|.+|++.+++ ++|+++++|||||||++|+.+++..+. .+.+++|++|
T Consensus 8 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 80 (219)
T 1q0u_A 8 RFPFQPFIIEAIKTLRFYKPTEIQERIIPGALR-------GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAP 80 (219)
T ss_dssp GSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH-------TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred hCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcC
Confidence 345566 78888888888999999999999875 368999999999999999999988765 3568999999
Q ss_pred cHHHHHHHHHHHHHhhcCCC---CcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEe
Q 003268 340 TIVLAKQHFDVVSERFSKYP---DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVV 411 (835)
Q Consensus 340 tr~La~Q~~~~~~~~f~~~~---gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVII 411 (835)
|++|+.|++++++......+ ++.+..+.|+.+... ..+.+. ..++|+|+||+.+.+ ...+.++++||+
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK---ALEKLN-VQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH---TTCCCS-SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH---HHHHcC-CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999987544332 578888888764432 222232 358999999988764 345688999999
Q ss_pred ccccccch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeC
Q 003268 412 DEEQRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 412 DEaHr~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~ 461 (835)
||||++.. .....+..++.+.+++++|||+++.........+.++..+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 99998632 122334455568899999999988777777777777766654
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=8e-23 Score=221.63 Aligned_cols=184 Identities=21% Similarity=0.184 Sum_probs=144.4
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr 341 (835)
+.++ +.+.+...++..|||+|.+||+.++. ..++|+++++|||||||++|++|++..+.. +.+++|++||+
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~-----~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Ptr 172 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTS-----SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHc-----CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcH
Confidence 3444 77788887788999999999999864 235899999999999999999999987643 45899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEecccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDEaH 415 (835)
+||.|+++.+......++++.+.+..++...... ....++|+||||++|.+ .+.+.++++|||||+|
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 9999999999874444467888888887654321 12458999999998853 3457899999999999
Q ss_pred ccch----h-hHH-HHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeC
Q 003268 416 RFGV----K-QKE-KIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 416 r~g~----~-~~e-~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~ 461 (835)
++.. . ... .+..++.+.++++||||++.....++...+.++..|..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 8632 1 122 23344678999999999999998888888888877654
No 72
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.89 E-value=1.5e-22 Score=208.49 Aligned_cols=184 Identities=24% Similarity=0.183 Sum_probs=137.4
Q ss_pred CCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---CCCEEEEEcccH
Q 003268 266 PKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---AGKQAMVLAPTI 341 (835)
Q Consensus 266 ~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~g~qvlVLvPtr 341 (835)
+.++ +.+.+...+...|+|+|.+|++.+++ ++|+++++|||+|||++|+.+++..+. .+.+++|++||+
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 20 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 4455 77788777777999999999999874 468999999999999999999987763 356899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEeccccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVDEEQR 416 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIIDEaHr 416 (835)
+|+.|+++.+.. +....++++..++|+.+..+.... + ..++|+|+||+.|.+ ...+.++++||+||||+
T Consensus 93 ~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 93 ELALQIQKVVMA-LAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp HHHHHHHHHHHH-HTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHH-HhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 999999999987 444447889999887665443322 2 238999999998753 34567899999999998
Q ss_pred cch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeCC
Q 003268 417 FGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 417 ~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~ 462 (835)
+.. .....+..+..+.+++++|||+++....+....+.++..+...
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 632 1223344556788999999999988888777777777666543
No 73
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=210.24 Aligned_cols=185 Identities=18% Similarity=0.077 Sum_probs=144.0
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEccc
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPT 340 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPt 340 (835)
++.++ +.+.+...+...|+|+|.+|++.++. ++|+++++|||||||++|+.+++..+.. +.+++|++||
T Consensus 48 l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 48 LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQ-------GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC-------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 45555 77778777777999999999999874 4789999999999999999998876543 4579999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc------ccccccccEEEeccc
Q 003268 341 IVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS------RVVYNNLGLLVVDEE 414 (835)
Q Consensus 341 r~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~------~l~~~~l~lVIIDEa 414 (835)
++|+.|+++.++..... .++++..++|+.+....... +. +.++|+|+||+.|.+ .+.+.++++||+|||
T Consensus 121 r~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 121 RELAFQISEQFEALGSS-IGVQSAVIVGGIDSMSQSLA---LA-KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCEEEECTTSCHHHHHHH---HH-TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred HHHHHHHHHHHHHHhcc-CCeeEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 99999999999874433 36889999998776543322 23 358999999998853 245678999999999
Q ss_pred cccch-----hhHHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceeeC
Q 003268 415 QRFGV-----KQKEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIST 461 (835)
Q Consensus 415 Hr~g~-----~~~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~ 461 (835)
|++.. .....+..++.+.++++||||+++....++...+.++..+..
T Consensus 196 h~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 196 DRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 98632 123334455668899999999998888877777777766543
No 74
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.89 E-value=7.8e-23 Score=213.82 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=139.5
Q ss_pred CCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh----CCCEEEEEcccH
Q 003268 267 KNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS----AGKQAMVLAPTI 341 (835)
Q Consensus 267 ~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~----~g~qvlVLvPtr 341 (835)
.++ +.+.+.+.+...|||+|.+|++.++. ++|+++++|||||||++|+.+++..+. .+.+++|++||+
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~ 108 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPIQMQAIPVMLH-------GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTR 108 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCH
Confidence 344 66777777777899999999999874 478999999999999999999988775 356899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-------ccccccccEEEeccc
Q 003268 342 VLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-------RVVYNNLGLLVVDEE 414 (835)
Q Consensus 342 ~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-------~l~~~~l~lVIIDEa 414 (835)
+|+.|+++++...+.. .++++..++++..... .+.....+.++|+|+||+.|.. .+.+.++++||+|||
T Consensus 109 ~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEa 184 (245)
T 3dkp_A 109 ELASQIHRELIKISEG-TGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDES 184 (245)
T ss_dssp HHHHHHHHHHHHHTTT-SCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHHhcc-cCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeCh
Confidence 9999999999975443 3678887776422211 1222334568999999998853 245788999999999
Q ss_pred cccch----hhHHHH----Hhh-cCCceEEEeecCCChhhHHHHHhcCCCcceeeCC
Q 003268 415 QRFGV----KQKEKI----ASF-KISVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 415 Hr~g~----~~~e~l----~~~-~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~ 462 (835)
|++.. .....+ ... ..+.++++||||+++.........+.++..+...
T Consensus 185 h~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 185 DKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 98743 122222 222 3578999999999888888777777777666554
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.89 E-value=3.4e-22 Score=202.80 Aligned_cols=182 Identities=21% Similarity=0.158 Sum_probs=141.4
Q ss_pred CCCCh-HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh------CCCEEEEE
Q 003268 265 YPKNP-AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVL 337 (835)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~------~g~qvlVL 337 (835)
++.++ +.+.+.+.+...|+|+|.+|++.+++ ++++++++|||+|||++|+.+++..+. .+.+++|+
T Consensus 6 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil 78 (207)
T 2gxq_A 6 FPLKPEILEALHGRGLTTPTPIQAAALPLALE-------GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVL 78 (207)
T ss_dssp SCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEE
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcC-------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEE
Confidence 45556 77888887778999999999999874 468999999999999999999988763 46789999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEec
Q 003268 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIID 412 (835)
+||++|+.|+++++...+. ++++..++|+.+....... +.. .++|+|+||+.+.+ .+.+.++++||+|
T Consensus 79 ~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 79 TPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEA---LLR-GADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp CSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHH---HHH-CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred ECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHH---hhC-CCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 9999999999999987433 3678888887765443332 233 48999999988753 3457889999999
Q ss_pred cccccch----hh-HHHHHhhcCCceEEEeecCCChhhHHHHHhcCCCcceee
Q 003268 413 EEQRFGV----KQ-KEKIASFKISVDVLTLSATPIPRTLYLALTGFRDASLIS 460 (835)
Q Consensus 413 EaHr~g~----~~-~e~l~~~~~~~~vL~lSATp~p~tl~~~~~~~~d~s~i~ 460 (835)
|+|++.. .. ...+.....+.+++++|||+++....++...+.++..+.
T Consensus 152 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 152 EADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred ChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 9998632 12 233344556889999999998887777777777766554
No 76
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.88 E-value=2.4e-22 Score=211.34 Aligned_cols=181 Identities=22% Similarity=0.196 Sum_probs=138.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC------------CCEEEEE
Q 003268 270 AIAEFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------------GKQAMVL 337 (835)
Q Consensus 270 ~~~~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~------------g~qvlVL 337 (835)
+.+.+...+...|||+|.+|++.++. ++|+++++|||||||++|+.+++..+.. +.+++|+
T Consensus 34 l~~~l~~~g~~~~~~~Q~~~i~~i~~-------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil 106 (253)
T 1wrb_A 34 IRNNILLASYQRPTPIQKNAIPAILE-------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLIL 106 (253)
T ss_dssp TTTTTTTTTCCSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEE
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEE
Confidence 55666666677999999999999874 4789999999999999999999877642 3589999
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc-----ccccccccEEEec
Q 003268 338 APTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS-----RVVYNNLGLLVVD 412 (835)
Q Consensus 338 vPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~-----~l~~~~l~lVIID 412 (835)
+||++|+.|+++++.. +....++.+..++|+.+..... ..+.. .++|+|+||+.|.+ ...+.++++||+|
T Consensus 107 ~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViD 181 (253)
T 1wrb_A 107 APTRELAIQILSESQK-FSLNTPLRSCVVYGGADTHSQI---REVQM-GCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 181 (253)
T ss_dssp CSSHHHHHHHHHHHHH-HHTTSSCCEEEECSSSCSHHHH---HHHSS-CCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred ECCHHHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHH---HHhCC-CCCEEEECHHHHHHHHHcCCCChhhCCEEEEe
Confidence 9999999999999987 4444468888888887655433 33333 48999999998864 2457889999999
Q ss_pred cccccc---h-hhHHHHHh---hcC--CceEEEeecCCChhhHHHHHhcCCCcceeeCC
Q 003268 413 EEQRFG---V-KQKEKIAS---FKI--SVDVLTLSATPIPRTLYLALTGFRDASLISTP 462 (835)
Q Consensus 413 EaHr~g---~-~~~e~l~~---~~~--~~~vL~lSATp~p~tl~~~~~~~~d~s~i~~~ 462 (835)
|||++. + .....+.. ... +.++++||||+++....++...+.++..+...
T Consensus 182 Eah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 182 EADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp THHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 999863 2 22333332 222 67899999999988888777777776666543
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.83 E-value=3.2e-20 Score=182.92 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=104.5
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYD 111 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeC
Confidence 4679999999999999999999988 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
.|. +..+|.||+||+||.|+.|.|++|+++.
T Consensus 112 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 142 (163)
T 2hjv_A 112 LPL-EKESYVHRTGRTGRAGNKGKAISFVTAF 142 (163)
T ss_dssp CCS-SHHHHHHHTTTSSCTTCCEEEEEEECGG
T ss_pred CCC-CHHHHHHhccccCcCCCCceEEEEecHH
Confidence 995 9999999999999999999999999865
No 78
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.83 E-value=2.5e-20 Score=192.00 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=103.9
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEe
Q 003268 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569 (835)
Q Consensus 490 ~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~ 569 (835)
..+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEES
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEEC
Confidence 35789999999999999999999988 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 570 d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
+.|. +..+|.||+||+||.|+.|.||+|+++.+
T Consensus 107 ~~p~-~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 107 RLPD-RAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp SCCS-SHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred CCCc-CHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 9995 99999999999999999999999998753
No 79
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=185.47 Aligned_cols=131 Identities=18% Similarity=0.299 Sum_probs=111.4
Q ss_pred eeEEecccCHHHHHHHHHHHHh-cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeE
Q 003268 469 IKTHLSAFSKEKVISAIKYELD-RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKI 547 (835)
Q Consensus 469 V~~~~~~~~~~~~~~~i~~~l~-~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~V 547 (835)
+...+...........+.+.+. .+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|
T Consensus 30 i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~R~~~l~~F~~g~~~v 107 (191)
T 2p6n_A 30 VIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK--GVEAVAIHGGKDQEERTKAIEAFREGKKDV 107 (191)
T ss_dssp SEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHH--TCCEEEECTTSCHHHHHHHHHHHHHTSCSE
T ss_pred ceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhcCCCEE
Confidence 4444433333344455555553 3678999999999999999999988 889999999999999999999999999999
Q ss_pred EEECCcCccCCCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 548 LICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 548 LVaT~iie~GIDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
||||+++++|+|+|++++||++|.|. +..+|.||+||+||.|+.|.|++|+++.
T Consensus 108 LvaT~~~~~Gldi~~v~~VI~~d~p~-~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 108 LVATDVASKGLDFPAIQHVINYDMPE-EIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EEECHHHHTTCCCCCCSEEEESSCCS-SHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EEEcCchhcCCCcccCCEEEEeCCCC-CHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999999999995 9999999999999999999999999865
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=182.55 Aligned_cols=121 Identities=19% Similarity=0.250 Sum_probs=105.9
Q ss_pred HHHHHHHHHh--cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCC
Q 003268 481 VISAIKYELD--RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558 (835)
Q Consensus 481 ~~~~i~~~l~--~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GI 558 (835)
....+...+. .+++++|||+++..++.++..|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gi 98 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGI 98 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCC
Confidence 4555555554 3579999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred CCCCcCEEEEecCCC-----CCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 559 DIQNANTIIVQDVQQ-----FGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 559 DIp~v~~VIi~d~p~-----~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
|+|++++||++|.|. ++..+|.||+||+||.|+.|.|++|+++.+
T Consensus 99 d~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 99 DVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp CCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred CcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 999999999999982 389999999999999999999999998764
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=9.4e-20 Score=181.46 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=104.1
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEEC
Confidence 4579999999999999999999988 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCceEEEEEecCC
Q 003268 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDK 602 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~ 602 (835)
.|. +..+|.||+||+||.|+.|.|++|+++.
T Consensus 108 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 108 MPE-DSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp CCS-SHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred CCC-CHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 995 9999999999999999999999999754
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.81 E-value=7.1e-20 Score=180.67 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=100.2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.++..|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 106 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeC
Confidence 4689999999999999999999987 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 107 ~p~-~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 107 LPA-NKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp CCS-SGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred CCC-CHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 995 99999999999999999999999998764
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=182.50 Aligned_cols=112 Identities=26% Similarity=0.458 Sum_probs=92.0
Q ss_pred hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEe
Q 003268 490 DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQ 569 (835)
Q Consensus 490 ~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~ 569 (835)
..+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~~--g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYHE--GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINF 121 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHHT--TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEES
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHc--CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEe
Confidence 34689999999999999999999987 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhcccCCCCCceEEEEEecCCCc
Q 003268 570 DVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSL 604 (835)
Q Consensus 570 d~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~~ 604 (835)
|.|. +..+|.||+||+||.|+.|.|++|+++.+.
T Consensus 122 d~p~-s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 122 DLPS-DIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp SCCS-SHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred CCCC-CHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 9995 999999999999999999999999987654
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=1.2e-19 Score=196.73 Aligned_cols=110 Identities=22% Similarity=0.348 Sum_probs=100.8
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||++++.++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~--g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT--TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC--CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcC
Confidence 4789999999999999999999887 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.||+|+++.+
T Consensus 105 ~p~-s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 105 MPD-RAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp CCS-STTHHHHHHTCCC-----CEEEEEECSST
T ss_pred CCC-CHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 995 99999999999999999999999998775
No 85
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.80 E-value=3.3e-19 Score=190.80 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=118.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC-CEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG-KQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g-~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
++|+|+|.+|++.++.+ .+.++++|||+|||.+++.++...+..+ .+++|++||++|+.|+++++.. +...
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~-~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHH-HTSC
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH-hccc
Confidence 58999999999988762 4578999999999999988877766554 4999999999999999999987 5555
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc--cccccccEEEeccccccchhhHHHH-HhhcCCceEE
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR--VVYNNLGLLVVDEEQRFGVKQKEKI-ASFKISVDVL 435 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~--l~~~~l~lVIIDEaHr~g~~~~e~l-~~~~~~~~vL 435 (835)
++..+..+.++..... ...+..+|+|+|++.+.+. ..+.++++||+||||++.......+ ..+....+++
T Consensus 184 ~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (282)
T ss_dssp CGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEE
T ss_pred ccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEE
Confidence 5677887777654322 1114589999999988764 3468899999999999976655444 4445689999
Q ss_pred EeecCCChh
Q 003268 436 TLSATPIPR 444 (835)
Q Consensus 436 ~lSATp~p~ 444 (835)
+|||||...
T Consensus 257 ~lSATp~~~ 265 (282)
T 1rif_A 257 GLSGSLRDG 265 (282)
T ss_dssp EECSSCCTT
T ss_pred EEeCCCCCc
Confidence 999999643
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.79 E-value=6.4e-19 Score=205.91 Aligned_cols=291 Identities=15% Similarity=0.137 Sum_probs=166.6
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
.|+|+|.|.+++..+...+.. +.++++.+|||+|||++|+.|++.. +.+++|++||++|+.|+.+++.. +
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~---~~~~~~~a~TGtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~-l--- 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKH---GKTLLLNAKPGLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKL-L--- 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHT---TCEEEEECCTTSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGG-G---
T ss_pred CCCCCHHHHHHHHHHHHHHHc---CCCEEEEcCCCCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHh-c---
Confidence 468999999999988776643 5799999999999999999998654 78999999999999999988765 3
Q ss_pred CCcEEEEecCCCCHH-------HH----------------------HHHHHhH--------------hcCCcceEecchH
Q 003268 359 PDIKVGLLSRFQSKA-------EK----------------------EEHLDMI--------------KHGHLNIIVGTHS 395 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~-------e~----------------------~~~l~~l--------------~~g~~dIIIgT~~ 395 (835)
++++..+.|..... .. ...|..+ ....+||||+||.
T Consensus 75 -~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 75 -GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp -TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred -CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 35555555422100 00 0011111 0124799999999
Q ss_pred hhhccc------------ccccccEEEeccccccchh-----------h----HHHHH----------------------
Q 003268 396 LLGSRV------------VYNNLGLLVVDEEQRFGVK-----------Q----KEKIA---------------------- 426 (835)
Q Consensus 396 ~L~~~l------------~~~~l~lVIIDEaHr~g~~-----------~----~e~l~---------------------- 426 (835)
.|.++. .+.+..+|||||||++... . .+.+.
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~ 233 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLID 233 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 887532 1346689999999975110 0 00000
Q ss_pred -----------------------------hh---------------------------------------cC-C------
Q 003268 427 -----------------------------SF---------------------------------------KI-S------ 431 (835)
Q Consensus 427 -----------------------------~~---------------------------------------~~-~------ 431 (835)
.. .+ .
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~ 313 (540)
T 2vl7_A 234 YMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIE 313 (540)
T ss_dssp HHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHH
T ss_pred HHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHH
Confidence 00 00 0
Q ss_pred --ce----EEEeecCCChh-----hHHHHHhcCCCcceeeCCCCCccceeE---EecccCH-----HHHHHHHHHHHh-c
Q 003268 432 --VD----VLTLSATPIPR-----TLYLALTGFRDASLISTPPPERLPIKT---HLSAFSK-----EKVISAIKYELD-R 491 (835)
Q Consensus 432 --~~----vL~lSATp~p~-----tl~~~~~~~~d~s~i~~~p~~r~~V~~---~~~~~~~-----~~~~~~i~~~l~-~ 491 (835)
.. +|++|||+.|. .+ ...+. . +-+...+-. .-..++. ..+.+.+.+.+. .
T Consensus 314 ~~~~~~~~~IltSATL~p~~~~~~~f---~~~~~------~-~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~~ 383 (540)
T 2vl7_A 314 DALNVKTFKVLMSGTLPESLTLTNSY---KIVVN------E-SYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENS 383 (540)
T ss_dssp HHTCCSSCEEEEESSCCTTCCCTTEE---EEECC------C-C-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCccCCeEEEcccCCCCcccchhc---CCchh------h-eecCCcceeccccCCCcccccCHHHHHHHHHHHHHHhC
Confidence 11 37778887761 11 00000 0 000000000 0011111 334555555543 4
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEE--ECCcCccCCCCCC----cCE
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILI--CTNIVESGLDIQN----ANT 565 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLV--aT~iie~GIDIp~----v~~ 565 (835)
++.++||+++...++.+++.|.. .. ...+|.. ..++++++.|+++. .||+ ||..+.+|||+|+ +++
T Consensus 384 ~g~~lvff~S~~~~~~v~~~l~~----~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 384 SKSVLVFFPSYEMLESVRIHLSG----IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp SSEEEEEESCHHHHHHHHTTCTT----SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHhcc----Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 67999999999888888876653 33 3556664 46889999999864 5666 8999999999997 899
Q ss_pred EEEecCCCCCH-----------------------------hHHHHHhcccCCCC-CceEEEEE
Q 003268 566 IIVQDVQQFGL-----------------------------AQLYQLRGRVGRAD-KEAHAYLF 598 (835)
Q Consensus 566 VIi~d~p~~sl-----------------------------~~l~Qr~GRaGR~g-~~G~ay~l 598 (835)
||+.+.|--++ ..+.|.+||+-|.. ..|..+++
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ll 518 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLC 518 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEE
Confidence 99999872221 23459999999974 44554443
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=179.80 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=117.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCC----CEEEEEcccHHHHHHH
Q 003268 273 EFAAQFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVV-SAG----KQAMVLAPTIVLAKQH 347 (835)
Q Consensus 273 ~~~~~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g----~qvlVLvPtr~La~Q~ 347 (835)
.+....++.++++|.++++.+.. +.+++++|+||||||+++..+++... ..+ .++++++|+++|+.|+
T Consensus 53 ~~~~~~~~p~~~~q~~~i~~i~~-------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~ 125 (235)
T 3llm_A 53 ILQERELLPVKKFESEILEAISQ-------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSV 125 (235)
T ss_dssp HHHHHHTSGGGGGHHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHhc-------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHH
Confidence 34445566789999999999875 57899999999999998877776543 223 3899999999999999
Q ss_pred HHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccc--ccccccEEEeccccccchh-----
Q 003268 348 FDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRV--VYNNLGLLVVDEEQRFGVK----- 420 (835)
Q Consensus 348 ~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l--~~~~l~lVIIDEaHr~g~~----- 420 (835)
++++...++...+..+++..++... .....++|+|+||++|.+.+ .+.++++|||||+|+++..
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 126 AERVAFERGEEPGKSCGYSVRFESI---------LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HHHHHHTTTCCTTSSEEEEETTEEE---------CCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHHHHHHhccccCceEEEeechhhc---------cCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHHH
Confidence 9999887765556666665443211 11245889999998886543 4789999999999986432
Q ss_pred -hHHHHHhhcCCceEEEeecCCChhh
Q 003268 421 -QKEKIASFKISVDVLTLSATPIPRT 445 (835)
Q Consensus 421 -~~e~l~~~~~~~~vL~lSATp~p~t 445 (835)
..+.+....++.++++||||++...
T Consensus 197 ~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 2233444557889999999997765
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.77 E-value=6.4e-19 Score=179.14 Aligned_cols=151 Identities=21% Similarity=0.168 Sum_probs=105.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC------CCEEEEEcccHHHHHH-HHH
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPTIVLAKQ-HFD 349 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~------g~qvlVLvPtr~La~Q-~~~ 349 (835)
...+.|+|+|.+|++.++. +.++++++|||+|||++++.++...+.. +.+++|++|+++|+.| +.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~ 101 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 101 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHH
Confidence 3457999999999998874 3689999999999999999888765432 6789999999999999 667
Q ss_pred HHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcc-----------cccccccEEEeccccccc
Q 003268 350 VVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR-----------VVYNNLGLLVVDEEQRFG 418 (835)
Q Consensus 350 ~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~-----------l~~~~l~lVIIDEaHr~g 418 (835)
.+.. +... ++++..++|+........ .+. ..++|+|+||+.|... ..+.++++|||||+|+++
T Consensus 102 ~~~~-~~~~-~~~v~~~~g~~~~~~~~~---~~~-~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 102 EFQP-FLKK-WYRVIGLSGDTQLKISFP---EVV-KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp THHH-HHTT-TSCEEECCC---CCCCHH---HHH-HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred HHHH-Hhcc-CceEEEEeCCcccchhHH---hhc-cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 7765 4443 578888888654332211 112 2489999999988532 446789999999999974
Q ss_pred hh-hHHH----HHhhc--------------CCceEEEeecC
Q 003268 419 VK-QKEK----IASFK--------------ISVDVLTLSAT 440 (835)
Q Consensus 419 ~~-~~e~----l~~~~--------------~~~~vL~lSAT 440 (835)
.. .... +.... +..++|+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 176 KEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 32 1111 11111 57899999998
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.63 E-value=3.2e-20 Score=184.17 Aligned_cols=110 Identities=16% Similarity=0.367 Sum_probs=104.3
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCCCCCCcCEEEEec
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQD 570 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GIDIp~v~~VIi~d 570 (835)
.+++++|||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA--GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFD 106 (170)
Confidence 4579999999999999999999987 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhcccCCCCCceEEEEEecCCC
Q 003268 571 VQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKS 603 (835)
Q Consensus 571 ~p~~sl~~l~Qr~GRaGR~g~~G~ay~l~~~~~ 603 (835)
.|. +..+|.||+||+||.|+.|.|++++++.+
T Consensus 107 ~p~-~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 138 (170)
T 2yjt_D 107 MPR-SGDTYLHRIGRTARAGRKGTAISLVEAHD 138 (170)
Confidence 994 99999999999999999999999997664
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3.1e-18 Score=179.36 Aligned_cols=140 Identities=25% Similarity=0.179 Sum_probs=113.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.+.++|+|+|.+|++.+++ ..++++++|||+|||.+++.++... +.+++|++|+++|+.|+++++.. |
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~-------~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~- 156 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F- 156 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTT-------TSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-G-
T ss_pred cCCCCcCHHHHHHHHHHHh-------CCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-C-
Confidence 4567999999999998753 2469999999999999998877653 78899999999999999999986 5
Q ss_pred CCCCcE-EEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccccc--ccccEEEeccccccchhhHHHHHhhcCCce
Q 003268 357 KYPDIK-VGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVY--NNLGLLVVDEEQRFGVKQKEKIASFKISVD 433 (835)
Q Consensus 357 ~~~gi~-V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~--~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~ 433 (835)
+++ +..++++.. ...+|+|+|++.+...... .++++|||||+|++.....+.+....+..+
T Consensus 157 ---~~~~v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~ 220 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIK-------------ELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPF 220 (237)
T ss_dssp ---CGGGEEEESSSCB-------------CCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCCCSE
T ss_pred ---CCCeEEEEeCCCC-------------CcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHHHHHhccCCE
Confidence 467 888888643 2478999999988654332 568999999999998766666766667889
Q ss_pred EEEeecCCChh
Q 003268 434 VLTLSATPIPR 444 (835)
Q Consensus 434 vL~lSATp~p~ 444 (835)
+|+|||||...
T Consensus 221 ~l~LSATp~r~ 231 (237)
T 2fz4_A 221 RLGLTATFERE 231 (237)
T ss_dssp EEEEEESCC--
T ss_pred EEEEecCCCCC
Confidence 99999999643
No 91
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=99.74 E-value=1.7e-17 Score=165.34 Aligned_cols=146 Identities=10% Similarity=0.173 Sum_probs=115.3
Q ss_pred ceEEeeecCCCCccccccccCCchHHHHHHHhhhhcCHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhcCccEE
Q 003268 681 SVQIDININPRLPSEYINHLENPMEMVNEAEKAAEQDIWCLMQFTESLRRQYGKEPYSMEILLKKLYVRRMAADIGITKI 760 (835)
Q Consensus 681 ~~~~~l~idp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~dr~G~~p~~~~~l~~~~~~~~~~~~~~~~~i 760 (835)
.+.+++++|+++|+.||++..+|+++|+|++.+. +.+++.++.+||.||||++|.+|++||.+++||++|+++||.+|
T Consensus 8 ~~~IdL~v~A~IP~~YI~d~~~RL~lYkria~~~--~~eel~~l~~EL~DRFG~lP~~v~~Ll~v~~lK~~a~~lgI~~I 85 (173)
T 2qsr_A 8 NAELILQIDAYLPDTYISDQRHKIEIYKKIRQID--NRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYLDKVFVQRV 85 (173)
T ss_dssp CCEEECCCCCCCCTTTCCCHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CcEEEeCCCccCChhhcCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 6789999999999999999999999999999976 55789999999999999999999999999999999999999999
Q ss_pred EecCcEEEEEecCC--HHH-HHHHHHhhcccccccceeeeCCeeEEEEEec-CCcHHHHHHHHHHHHHHHhh
Q 003268 761 YASGKMVGMKTNMN--KKV-FKMMIDSMTSEVHRNSLTFEGDQIKAELLLE-LPREQLLNWIFQCLAELYAS 828 (835)
Q Consensus 761 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 828 (835)
...++.+.+.+..+ ..+ ...+...++..+.+..+...++.+.+.+... .+..++++.+..+|..+.+.
T Consensus 86 ~~~~~~i~i~f~~~~~~~~~~~~l~~~i~~~~~~~~l~~~~~~l~i~~~~~~~~~~~~l~~~~~lL~~L~~~ 157 (173)
T 2qsr_A 86 ERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQNKKDYEILEGLLIFGESLLEI 157 (173)
T ss_dssp EECSSEEEEEECTTHHHHCCHHHHHHHHTTSSSEEEEEEETTEEEEEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCEEEEEEccCcccccCHHHHHHHHHhcCccEEecCCCccEEEEEecCcccHHHHHHHHHHHHHHHHHH
Confidence 99999988887533 111 2234445544444445544344555554433 24566799999999888654
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=1.7e-15 Score=177.37 Aligned_cols=278 Identities=11% Similarity=0.088 Sum_probs=177.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~ 359 (835)
|+++|.|.+++..+.+.+.. +.++++.+|||+|||++|+.|++. .+.+++|++||++|+.|+.+++.. +....
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~---~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~-l~~~~ 74 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRN---NFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTK-IREKR 74 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHT---TCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTT-CCCSS
T ss_pred CCCCHHHHHHHHHHHHHHHc---CCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHH-Hhhhc
Confidence 68999999999988876643 579999999999999999999887 478999999999999999988875 55544
Q ss_pred CcEEEEecCCCCHH------------------------------HHHHHHHhH-----------------hcCCcceEec
Q 003268 360 DIKVGLLSRFQSKA------------------------------EKEEHLDMI-----------------KHGHLNIIVG 392 (835)
Q Consensus 360 gi~V~~l~g~~s~~------------------------------e~~~~l~~l-----------------~~g~~dIIIg 392 (835)
++++..+.|..+.. .....+..+ ....+||||+
T Consensus 75 ~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 75 NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 68888877632110 001111111 1124899999
Q ss_pred chHhhhccc-----cc-ccccEEEeccccccch-----------hh----------------------------------
Q 003268 393 THSLLGSRV-----VY-NNLGLLVVDEEQRFGV-----------KQ---------------------------------- 421 (835)
Q Consensus 393 T~~~L~~~l-----~~-~~l~lVIIDEaHr~g~-----------~~---------------------------------- 421 (835)
||..|.+.. .+ .+..+|||||||++.. .+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKY 234 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSC
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999987642 12 3567899999996311 00
Q ss_pred ----------H-------H---------------------HH----Hh--------------h--------------cCC
Q 003268 422 ----------K-------E---------------------KI----AS--------------F--------------KIS 431 (835)
Q Consensus 422 ----------~-------e---------------------~l----~~--------------~--------------~~~ 431 (835)
. + .+ .. + ...
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~ 314 (551)
T 3crv_A 235 IKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDN 314 (551)
T ss_dssp EECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhcc
Confidence 0 0 00 00 0 012
Q ss_pred -ceEEEeecCCChhhHHHHHhcCC-Ccc----eeeCCCCCccceeEEec-----ccC------HHHHHHHHHHHHh-cCC
Q 003268 432 -VDVLTLSATPIPRTLYLALTGFR-DAS----LISTPPPERLPIKTHLS-----AFS------KEKVISAIKYELD-RGG 493 (835)
Q Consensus 432 -~~vL~lSATp~p~tl~~~~~~~~-d~s----~i~~~p~~r~~V~~~~~-----~~~------~~~~~~~i~~~l~-~gg 493 (835)
..+|++|||..|-.......|+. +.. .+..+.+-......++. .+. .+.+.+.+.+.+. .+|
T Consensus 315 ~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~~g 394 (551)
T 3crv_A 315 ELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAKA 394 (551)
T ss_dssp TCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHCSS
T ss_pred CceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhCCC
Confidence 57899999998855444455554 221 11122111111112211 011 1234444444443 468
Q ss_pred eEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEEC--CcCccCCCCC-----CcCEE
Q 003268 494 QVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICT--NIVESGLDIQ-----NANTI 566 (835)
Q Consensus 494 qvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT--~iie~GIDIp-----~v~~V 566 (835)
.++||+++-...+.+++. .+..+.+-..+++ +..+++.|+...--||+|| ..+..|||+| .++.|
T Consensus 395 ~~lvlF~Sy~~l~~v~~~-----~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR-----ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp EEEEEESCHHHHHHHHTT-----CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CEEEEecCHHHHHHHHHh-----cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 999999998888777752 2455544333455 3556777754444799998 6999999999 37889
Q ss_pred EEecCC
Q 003268 567 IVQDVQ 572 (835)
Q Consensus 567 Ii~d~p 572 (835)
|+...|
T Consensus 467 iI~~lP 472 (551)
T 3crv_A 467 VIVGIP 472 (551)
T ss_dssp EEESCC
T ss_pred EEEcCC
Confidence 987765
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.61 E-value=4.6e-14 Score=167.35 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
|+|+|.|.+.+.++.+.+.+ +.++++++|||+|||++|+.|++..+. .+.+++|++||++|+.|+.+.+.. +...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~---~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~-l~~~ 77 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQK---SYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS-LSST 77 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHH---SSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHc---CCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHH-Hhhc
Confidence 68999999999999887743 589999999999999999999987653 478999999999999999999876 4332
Q ss_pred CCcEEEEecC
Q 003268 359 PDIKVGLLSR 368 (835)
Q Consensus 359 ~gi~V~~l~g 368 (835)
.++++..+.|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 2466666554
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.56 E-value=7.3e-15 Score=156.94 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcC-Cee-EEEECCcCccC
Q 003268 480 KVISAIKYELDRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQG-AIK-ILICTNIVESG 557 (835)
Q Consensus 480 ~~~~~i~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g-~~~-VLVaT~iie~G 557 (835)
.+.+.+......+.+++|||+....++.+...|.... ++.+..+||+++..+|+.+++.|+++ ..+ +|+||+++++|
T Consensus 100 ~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~-g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~G 178 (271)
T 1z5z_A 100 RTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL-NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFG 178 (271)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH-CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCC
T ss_pred HHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc-CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCC
Confidence 3444555555678999999999999999999998732 67888999999999999999999998 677 78999999999
Q ss_pred CCCCCcCEEEEecCCCCCHhHHHHHhcccCCCCCc--eEEEEEecCCCc
Q 003268 558 LDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKE--AHAYLFYPDKSL 604 (835)
Q Consensus 558 IDIp~v~~VIi~d~p~~sl~~l~Qr~GRaGR~g~~--G~ay~l~~~~~~ 604 (835)
+|++++++||++|+| |++..+.|++||++|.|+. ..+|.+++..++
T Consensus 179 lnl~~a~~VI~~d~~-wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 179 INLTSANRVIHFDRW-WNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp CCCTTCSEEEECSCC-SCTTTC--------------CCEEEEEEETTSH
T ss_pred cCcccCCEEEEECCC-CChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 999999999999998 6999999999999999965 456888887754
No 95
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=99.39 E-value=7.5e-14 Score=118.32 Aligned_cols=69 Identities=29% Similarity=0.517 Sum_probs=30.9
Q ss_pred CCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEcCCC-cccChhhhhHHhhhccCCCCCCchHHHhhc
Q 003268 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYADGM-AKLPVKQASRMLYRYNLPNETKRPRTLSKL 226 (835)
Q Consensus 153 ~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~l 226 (835)
.|++||||||.+||||+|.||+..... +..+||+.|+|++++ .++|++++ ++++||.+.++. .|+|+||
T Consensus 2 ~l~~GD~VVh~~hGiG~~~gi~~~~v~--g~~~ey~~l~y~~~~~l~VPv~~~-~~i~ry~g~~~~--~p~L~kL 71 (71)
T 3mlq_E 2 PHMPGDYLIHPEHGVGQYLGLETREVL--GVKRDYLVLRYKGEGKLYLPVEQL-PLLKRHPGTTDD--PPELSSL 71 (71)
T ss_dssp --------------CEEEEEEEEEEET--TEEEEEEEEEETTTEEEEEESSSC-C--------------------
T ss_pred cCCCCCEEEECCCeeEEEeEEEEEEeC--CeeEEEEEEEECCCCEEEEEhhhh-cceeeecCCCCC--CCcCCcC
Confidence 478999999999999999999843332 678999999999986 78999997 579999986643 6888876
No 96
>2lqk_A Transcriptional regulator; RNA polymerase interacting domain, transcription regulator; NMR {Thermus thermophilus}
Probab=98.03 E-value=5e-09 Score=88.51 Aligned_cols=50 Identities=30% Similarity=0.461 Sum_probs=42.1
Q ss_pred CCCCCCcccccccccEEEeeEEEeecCCCCCccceEEEEEc-CC-CcccChhhh
Q 003268 153 SLRSGDYVVHKKVGIGKFVGIKFDVQKDSTVPIEYVFIEYA-DG-MAKLPVKQA 204 (835)
Q Consensus 153 ~~~~gd~vvh~~~G~g~~~g~~~~~~~~~~~~~~~~~~~y~-~~-~~~~~~~~~ 204 (835)
++++||||||.+||+|+|.||+.... ++..+||+.|+|+ ++ ..++|++++
T Consensus 6 ~f~~GD~VVy~~hGvg~i~gIe~~~v--~G~~~~y~~l~~~~~~~~l~VPv~~~ 57 (70)
T 2lqk_A 6 EFRPGDKVVLPPYGVGVVAGIAQRSV--SGVSRAYYQVDFPGSRSKAYVPVEAP 57 (70)
Confidence 78999999999999999999984332 2678999999998 44 378999986
No 97
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.32 E-value=2.2e-06 Score=101.35 Aligned_cols=150 Identities=20% Similarity=0.181 Sum_probs=86.1
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHH--HHHHHHHHH--hCCCEEEEEcccHHHH
Q 003268 270 AIAEFAAQFPY-EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEV--ALRAIFCVV--SAGKQAMVLAPTIVLA 344 (835)
Q Consensus 270 ~~~~~~~~~~~-~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~v--al~a~~~~~--~~g~qvlVLvPtr~La 344 (835)
+...+...|+. ..++.|+.|++.++. +..++++|++|+|||.+ ++.+++... ..+.++++++||..+|
T Consensus 137 ~~~~l~~~~~~~~~~~~Q~~Ai~~~l~-------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA 209 (608)
T 1w36_D 137 LAQTLDKLFPVSDEINWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHTTCCCTTSCCHHHHHHHHHHT-------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHH
Confidence 44455555542 337999999998863 36899999999999954 566666544 3466999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEec-chHh--h-hcccccccccEEEeccccccchh
Q 003268 345 KQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG-THSL--L-GSRVVYNNLGLLVVDEEQRFGVK 420 (835)
Q Consensus 345 ~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIg-T~~~--L-~~~l~~~~l~lVIIDEaHr~g~~ 420 (835)
.++.+.+....... ++......+. .. + ...++-+++ +++. + .......++++|||||++.+...
T Consensus 210 ~~L~e~~~~~~~~l-~l~~~~~~~~-~~-~---------~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~ 277 (608)
T 1w36_D 210 ARLTESLGKALRQL-PLTDEQKKRI-PE-D---------ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLP 277 (608)
T ss_dssp HHHHHHHTHHHHHS-SCCSCCCCSC-SC-C---------CBTTTSCC-----------CTTSCCSCSEEEECSGGGCBHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHhcc-ch-h---------hhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCCHH
Confidence 99888765432221 1110000000 00 0 000111111 1110 1 01111226889999999977765
Q ss_pred hHHH-HHhhcCCceEEEee
Q 003268 421 QKEK-IASFKISVDVLTLS 438 (835)
Q Consensus 421 ~~e~-l~~~~~~~~vL~lS 438 (835)
.... +..++.+.++|++-
T Consensus 278 ~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 278 MMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp HHHHHHHTCCTTCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEEEc
Confidence 5444 44555667777654
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.30 E-value=5.1e-05 Score=90.29 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. . ..-.||.||.|+|||.+....+...+..+.++|+++||...+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~---~---~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---Q---KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHH---C---SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---C---CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4789999999988874 1 124799999999999998877878888899999999999999999988865
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.13 E-value=2e-05 Score=89.93 Aligned_cols=134 Identities=19% Similarity=0.143 Sum_probs=82.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCC-EEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGK-QAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~-qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
.-.|++.|.+|+..++..+... . ..++|.|+.|+|||.++...+......+. .+++++||...|..+.+.+
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~-~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~------ 94 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEK-K-HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS------ 94 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSS-S-CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH------
T ss_pred cccCCHHHHHHHHHHHHHHhcC-C-CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh------
Confidence 3489999999999988766432 2 38999999999999876544444445555 7999999998887655443
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHh-Hh-cCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcC-CceE
Q 003268 358 YPDIKVGLLSRFQSKAEKEEHLDM-IK-HGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKI-SVDV 434 (835)
Q Consensus 358 ~~gi~V~~l~g~~s~~e~~~~l~~-l~-~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~-~~~v 434 (835)
+..+..+++. +.. .. .+....+.. .....+..+++|||||+|.+...+...+..... ..++
T Consensus 95 --~~~~~T~h~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~ 158 (459)
T 3upu_A 95 --GKEASTIHSI---------LKINPVTYEENVLFEQ-----KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTI 158 (459)
T ss_dssp --SSCEEEHHHH---------HTEEEEECSSCEEEEE-----CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEE
T ss_pred --ccchhhHHHH---------hccCcccccccchhcc-----cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEE
Confidence 2333333321 100 00 000000000 112235678999999999988777666655433 3444
Q ss_pred EE
Q 003268 435 LT 436 (835)
Q Consensus 435 L~ 436 (835)
++
T Consensus 159 ~~ 160 (459)
T 3upu_A 159 IG 160 (459)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.05 E-value=0.0001 Score=87.23 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC----CEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG----KQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g----~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.+++.|.+|+.. ....++|.|+.|||||.+.+.-+...+..+ .+++++++|+..+.++.+++.+.++
T Consensus 9 ~Ln~~Q~~av~~---------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVAA---------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHTC---------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHhC---------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 689999999752 135689999999999999877666666542 5899999999999999999987654
Q ss_pred CC-CCcEEEEecCC
Q 003268 357 KY-PDIKVGLLSRF 369 (835)
Q Consensus 357 ~~-~gi~V~~l~g~ 369 (835)
.. .++.|..++++
T Consensus 80 ~~~~~~~v~Tfhs~ 93 (647)
T 3lfu_A 80 TSQGGMWVGTFHGL 93 (647)
T ss_dssp SCCTTCEEEEHHHH
T ss_pred cccCCcEEEcHHHH
Confidence 32 35677766653
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=3.4e-05 Score=93.90 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. ..-.+|.||.|+|||.+....+...+. .+.++++++||...+.++.+++.+
T Consensus 359 ~~Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHTT-------CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 3789999999988753 235799999999999886555444433 578999999999999999998875
No 102
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.03 E-value=5.5e-05 Score=89.65 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. ..-.+|.||+|+|||.+....+...+. .+.++++++||...+.++.+++..
T Consensus 179 ~~ln~~Q~~av~~~l~-------~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHHT-------CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc-------CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4789999999988763 235799999999999987655554444 578999999999999999888765
No 103
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.00 E-value=2.9e-05 Score=91.15 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=79.0
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCC
Q 003268 279 PYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKY 358 (835)
Q Consensus 279 ~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~ 358 (835)
++.+++.|.+|+..++. ...++|.|+.|+|||.+....+......+.++++++||...+..+.+..
T Consensus 187 ~~~L~~~Q~~Av~~~~~-------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH-------
T ss_pred cCCCCHHHHHHHHHHHh-------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh-------
Confidence 77899999999988753 3678999999999998754444344457889999999998887655433
Q ss_pred CCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhh-cCCceEEE
Q 003268 359 PDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASF-KISVDVLT 436 (835)
Q Consensus 359 ~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~-~~~~~vL~ 436 (835)
+.....+++... ..- + ..........++++|||||++.+.......+... ....++++
T Consensus 253 -~~~a~Tih~ll~-----------------~~~-~-~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 253 -GRTASTVHRLLG-----------------YGP-Q-GFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp -TSCEEEHHHHTT-----------------EET-T-EESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEE
T ss_pred -cccHHHHHHHHc-----------------CCc-c-hhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEE
Confidence 222333332110 000 0 0001111234678999999999987766555443 33444444
No 104
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.88 E-value=0.00012 Score=89.12 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..+++.|.+|+..++. ..-.+|.||.|+|||.+....+...+. .+.++++++||...+.++.+++..
T Consensus 355 ~~Ln~~Q~~Av~~~l~-------~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHT-------SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhcc-------CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4789999999988763 235799999999999986555544444 578999999999999998888764
No 105
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.55 E-value=0.0019 Score=77.06 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHhhc
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERFS 356 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~f~ 356 (835)
.++|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++++++.|+..|.++.+++...++
T Consensus 2 ~L~~~Q~~av~~~---------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV---------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC---------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC---------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5899999997531 3578999999999999976655544432 36899999999999999999988665
Q ss_pred CC--CCcEEEEecCC
Q 003268 357 KY--PDIKVGLLSRF 369 (835)
Q Consensus 357 ~~--~gi~V~~l~g~ 369 (835)
.. .++.|..++++
T Consensus 73 ~~~~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 73 RKEARGLMISTFHTL 87 (673)
T ss_dssp TTTTTTSEEEEHHHH
T ss_pred cccccCCEEEeHHHH
Confidence 32 24778777654
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.42 E-value=0.00048 Score=70.46 Aligned_cols=108 Identities=20% Similarity=0.224 Sum_probs=61.4
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l 382 (835)
++-.+++|++|+|||+.++..+......|.+++++.|...-- --...+.+++ |+.+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R-~ge~~i~s~~----g~~~~a----------------- 85 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNR-YSEEDVVSHN----GLKVKA----------------- 85 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC----------------------CCE-----------------
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCc-chHHHHHhhc----CCeeEE-----------------
Confidence 455668999999999999999999989999999999975310 0001111111 111110
Q ss_pred hcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhc-CCceEEEeecC
Q 003268 383 KHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK-ISVDVLTLSAT 440 (835)
Q Consensus 383 ~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~-~~~~vL~lSAT 440 (835)
+.+....-+...+. .++++|+|||+|-|...+.+.+..+. .+..| ++++-
T Consensus 86 ------~~~~~~~~~~~~~~-~~~dvViIDEaQF~~~~~V~~l~~l~~~~~~V-i~~Gl 136 (214)
T 2j9r_A 86 ------VPVSASKDIFKHIT-EEMDVIAIDEVQFFDGDIVEVVQVLANRGYRV-IVAGL 136 (214)
T ss_dssp ------EECSSGGGGGGGCC-SSCCEEEECCGGGSCTTHHHHHHHHHHTTCEE-EEEEC
T ss_pred ------eecCCHHHHHHHHh-cCCCEEEEECcccCCHHHHHHHHHHhhCCCEE-EEEec
Confidence 11111112221111 35899999999998766666666543 34444 44544
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.36 E-value=0.00066 Score=67.72 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
++-.+++|++|+|||+.++..+......+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 355789999999999999888887777889999998884
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.28 E-value=0.00067 Score=68.26 Aligned_cols=39 Identities=28% Similarity=0.295 Sum_probs=34.1
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
++=.+++|++|||||+.++..+......|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 456788999999999999988888888899999999974
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.89 E-value=0.00059 Score=70.40 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=34.5
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
++.-.+++|++|+|||+.++..+......|.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 3567888999999999999988888888899999998764
No 110
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.88 E-value=0.003 Score=64.63 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=61.0
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHh
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~ 381 (835)
.++=.+++|+.|+|||+.++..+......+.+++++.|...--. -...+..+. |+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~-~~~~I~Sr~----G~~~------------------ 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRY-HKEKVVSHN----GNAI------------------ 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC------------CBT----TBCC------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcc-hhhhHHHhc----CCce------------------
Confidence 35667899999999999888888888788999999999753110 001111111 1111
Q ss_pred HhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhc-CCceEE
Q 003268 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFK-ISVDVL 435 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~-~~~~vL 435 (835)
.-+.+....-+...+ ..++++|+|||+|-|...+.+.+..+. .+..|+
T Consensus 84 -----~a~~v~~~~di~~~i-~~~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi 132 (219)
T 3e2i_A 84 -----EAINISKASEIMTHD-LTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVI 132 (219)
T ss_dssp -----EEEEESSGGGGGGSC-CTTCSEEEECCGGGSCTHHHHHHHHHHHTTCEEE
T ss_pred -----eeEEeCCHHHHHHHH-hcCCCEEEEechhcCCHHHHHHHHHHHHCCCEEE
Confidence 112233333332222 257889999999998765555554432 344444
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.80 E-value=0.0064 Score=66.04 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
+.|+|.+++..+...+..+.-+...|+.||.|+|||..+...+-.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 469999999988887755444566999999999999887554433
No 112
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.58 E-value=0.0035 Score=63.13 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
++=.+++|++|||||+-.+..+......+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45678899999999999999988888889999999886
No 113
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.56 E-value=0.0075 Score=65.33 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=81.2
Q ss_pred HHHHHHHHHH-hcCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCcCccCC
Q 003268 480 KVISAIKYEL-DRGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGL 558 (835)
Q Consensus 480 ~~~~~i~~~l-~~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~iie~GI 558 (835)
.+++.+...+ ..+.+|++|++..+..+-+.+++... ++....+.|.....+ ++. .+....|.+.|...+-|+
T Consensus 112 ~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~--~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsag~~gi 184 (328)
T 3hgt_A 112 SVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN--KVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSEGINFT 184 (328)
T ss_dssp HHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS--SCEEEESSSCCC------------CCSEEEEEEESSCCCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC--CCceEeCCCCchhhh-hhc----ccCCceEEEEECCCCCCc
Confidence 3444444433 46779999999999999998888876 899999999955432 221 245566666677666677
Q ss_pred C-----CCCcCEEEEecCCCCCHhHH-HHHhcccCCCC----CceEEEEEecCCCc
Q 003268 559 D-----IQNANTIIVQDVQQFGLAQL-YQLRGRVGRAD----KEAHAYLFYPDKSL 604 (835)
Q Consensus 559 D-----Ip~v~~VIi~d~p~~sl~~l-~Qr~GRaGR~g----~~G~ay~l~~~~~~ 604 (835)
| ...+++||.+|.+ |++.+- +|.+-|+.|.+ +...+|.+++...+
T Consensus 185 n~~~~nl~~aD~VI~~Dsd-wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTT-VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp TSCCCCCSCCSEEEECSTT-CCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CcccccCCCCCEEEEECCC-CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 6 6789999999998 788774 88887877763 56788999988754
No 114
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.47 E-value=0.033 Score=61.96 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=55.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHH-HHh-CCCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFC-VVS-AGKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~-~~~-~g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
.++.|+|+|...+..+.. .+-++++.+-+.|||.++...++. ++. .+.++++++|+..-|..+++.++..+
T Consensus 160 ~p~~L~p~Qk~il~~l~~-------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCCCHHHHHHHHHHHH-------SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhcc-------CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 467899999998876631 245889999999999986544443 333 46789999999999998888877655
Q ss_pred cCCC
Q 003268 356 SKYP 359 (835)
Q Consensus 356 ~~~~ 359 (835)
...|
T Consensus 233 ~~~P 236 (385)
T 2o0j_A 233 ELLP 236 (385)
T ss_dssp HHSC
T ss_pred HhCh
Confidence 5444
No 115
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.34 E-value=0.054 Score=63.53 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH-HHHHHhC-CCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 278 FPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA-IFCVVSA-GKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 278 ~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a-~~~~~~~-g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
.++.|+|+|...+..+. . .+.+++.++-|+|||.+.... +...+.. +..+++++|+...|..+++.++..+
T Consensus 160 ~~~~l~p~Q~~i~~~l~----~---~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMS----S---KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCCCHHHHHHHHHHH----H---CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhc----c---ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 46789999999887762 1 246889999999999985433 3333333 4589999999999999998888766
Q ss_pred cCCC
Q 003268 356 SKYP 359 (835)
Q Consensus 356 ~~~~ 359 (835)
...|
T Consensus 233 ~~~p 236 (592)
T 3cpe_A 233 ELLP 236 (592)
T ss_dssp TTSC
T ss_pred HhCh
Confidence 6554
No 116
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.32 E-value=0.025 Score=54.49 Aligned_cols=92 Identities=12% Similarity=0.185 Sum_probs=73.5
Q ss_pred CccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecc
Q 003268 314 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393 (835)
Q Consensus 314 sGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT 393 (835)
..|-.. +..++.. ..+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|..+|+|+|
T Consensus 20 ~~K~~~-L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 20 ENKFSL-LKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp GGHHHH-HHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHH-HHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 456543 3334433 35678999999999999998888763 6889999999999999999999999999999999
Q ss_pred hHhhhcccccccccEEEecc
Q 003268 394 HSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 394 ~~~L~~~l~~~~l~lVIIDE 413 (835)
..+...+++.++++||.-.
T Consensus 93 -~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 93 -DVAARGIDIENISLVINYD 111 (163)
T ss_dssp -GGGTTTCCCSCCSEEEESS
T ss_pred -ChhhcCCchhcCCEEEEeC
Confidence 5666677888888888643
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.25 E-value=0.027 Score=54.88 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhhh--cCCCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHH
Q 003268 283 TPDQKKAFLDVERDLT--ERETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQ 346 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~--~~~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q 346 (835)
++.|.+++..+..-.. ..+.+..++++||+|+|||..+-..+-... ..|..++++ +...+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~ 81 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFR 81 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHH
Confidence 6788888887764221 113367899999999999987644333332 445555443 33344333
No 118
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.18 E-value=0.028 Score=54.28 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchH
Q 003268 316 KTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHS 395 (835)
Q Consensus 316 KT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~ 395 (835)
|.. ++..++... .+.+++|.++++.-+..++..+... ++.+..+++..+..++...++.+.+|..+|+|+| .
T Consensus 17 K~~-~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-~ 88 (165)
T 1fuk_A 17 KYE-CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-D 88 (165)
T ss_dssp HHH-HHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-G
T ss_pred HHH-HHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-C
Confidence 654 344444442 4678999999999999988888763 6789999999999999999999999999999999 5
Q ss_pred hhhcccccccccEEEecc
Q 003268 396 LLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 396 ~L~~~l~~~~l~lVIIDE 413 (835)
.+...+++.++++||.-.
T Consensus 89 ~~~~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 89 LLARGIDVQQVSLVINYD 106 (165)
T ss_dssp GGTTTCCCCSCSEEEESS
T ss_pred hhhcCCCcccCCEEEEeC
Confidence 566667788888887643
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.17 E-value=0.006 Score=63.04 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=34.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
++-.+++|++|+|||+.++..+..+...|++++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 456788999999999999999999989999999999875
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.028 Score=60.84 Aligned_cols=38 Identities=8% Similarity=-0.168 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 285 DQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 285 ~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
.|...+...+........+.+++|.||+|+|||.++-.
T Consensus 27 ~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 27 EDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHH
Confidence 34444443433333456788999999999999987533
No 121
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.00 E-value=0.0094 Score=67.33 Aligned_cols=102 Identities=16% Similarity=0.033 Sum_probs=60.4
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHh
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIK 383 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~ 383 (835)
.-.++.|+.|+|||......+ .....+|++||++++..+.+.+... +.. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~-----~~~~~lVlTpT~~aa~~l~~kl~~~-~~~---------~--------------- 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRV-----NFEEDLILVPGRQAAEMIRRRANAS-GII---------V--------------- 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHC-----CTTTCEEEESCHHHHHHHHHHHTTT-SCC---------C---------------
T ss_pred cEEEEEcCCCCCHHHHHHHHh-----ccCCeEEEeCCHHHHHHHHHHhhhc-Ccc---------c---------------
Confidence 346789999999998654332 2256799999999998877766431 100 0
Q ss_pred cCCcceEecchHh-hhccccc--ccccEEEeccccccchhhHHHHHhhcCCceEEEe
Q 003268 384 HGHLNIIVGTHSL-LGSRVVY--NNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTL 437 (835)
Q Consensus 384 ~g~~dIIIgT~~~-L~~~l~~--~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~l 437 (835)
....-|.|.+. |.+.... -..++|||||+..+.......+....+..+++++
T Consensus 212 --~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilv 266 (446)
T 3vkw_A 212 --ATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVY 266 (446)
T ss_dssp --CCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEE
T ss_pred --cccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEe
Confidence 01122444332 2222222 2478999999998765555444444333444443
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.99 E-value=0.037 Score=53.15 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
|...+..+.+.+. ...+..++++||+|+|||..+-..+
T Consensus 27 ~~~~~~~l~~~l~-~~~~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 27 RDTEIRRAIQILS-RRTKNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp CHHHHHHHHHHHT-SSSSCEEEEESCGGGCHHHHHHHHH
T ss_pred chHHHHHHHHHHh-CCCCCceEEECCCCCCHHHHHHHHH
Confidence 3344444544442 3446789999999999998764433
No 123
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.98 E-value=0.028 Score=54.84 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=73.3
Q ss_pred CccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecc
Q 003268 314 FGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGT 393 (835)
Q Consensus 314 sGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT 393 (835)
..|.. ++..++.. ..+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|..+|+|+|
T Consensus 16 ~~K~~-~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 16 NEKNR-KLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp GGHHH-HHHHHHHH-SCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred HHHHH-HHHHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 45654 34444443 24678999999999999998888763 6889999999999999999999999999999999
Q ss_pred hHhhhcccccccccEEEecc
Q 003268 394 HSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 394 ~~~L~~~l~~~~l~lVIIDE 413 (835)
..+...+++.++++||.-+
T Consensus 89 -~~~~~Gldi~~~~~Vi~~d 107 (172)
T 1t5i_A 89 -NLFGRGMDIERVNIAFNYD 107 (172)
T ss_dssp -SCCSTTCCGGGCSEEEESS
T ss_pred -CchhcCcchhhCCEEEEEC
Confidence 5566667788888888644
No 124
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.019 Score=55.98 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=65.8
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..++..+... ++.+..++|..+..++...++.+.+|..+|+|+| ..+...+++.++++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-~~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-NVCARGIDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-CSCCTTTCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-cchhcCCCcccCCEE
Confidence 4579999999999999988888752 6889999999999999999999999999999999 555666778888888
Q ss_pred Ee
Q 003268 410 VV 411 (835)
Q Consensus 410 II 411 (835)
|.
T Consensus 107 i~ 108 (175)
T 2rb4_A 107 VN 108 (175)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 125
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.093 Score=57.02 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhhhcCCCCC--cEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEc
Q 003268 283 TPDQKKAFLDVERDLTERETPM--DRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLA 338 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~--d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLv 338 (835)
+..+.+.+...+.....+..+. .++|+||+|+|||..+-. +...+.. +..++.+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYIN 80 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEe
Confidence 3444444444443322234445 799999999999987633 3333332 34555543
No 126
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.96 E-value=0.015 Score=57.61 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=61.9
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEec
Q 003268 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392 (835)
Q Consensus 313 GsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIg 392 (835)
.+.|-. ++.-++.....+.+++|.++++.-+..+++.+... |+.+..++|..+..++...++.+.+|..+|+|+
T Consensus 29 ~~~K~~-~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLva 102 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVA 102 (185)
T ss_dssp GGGHHH-HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEE
T ss_pred cHHHHH-HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 456654 34444544445788999999999999988888763 688999999999889999999999999999999
Q ss_pred chHhhhcccccccccEEEe
Q 003268 393 THSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 393 T~~~L~~~l~~~~l~lVII 411 (835)
| ..+...+++.++++||.
T Consensus 103 T-~~~~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 103 T-AVAARGLDISNVKHVIN 120 (185)
T ss_dssp E-C------CCCSBSEEEE
T ss_pred c-ChhhcCCCcccCCEEEE
Confidence 9 55666677888888876
No 127
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.93 E-value=0.026 Score=67.17 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecch
Q 003268 315 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394 (835)
Q Consensus 315 GKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~ 394 (835)
|+-...+..+......+.+++|.++|+.-+..+++.+.+. |+++.++++..+..++...++.+.+|.++|+|||.
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~ 503 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN 503 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 4333333344444557889999999999999988888763 68899999999999999999999999999999995
Q ss_pred HhhhcccccccccEEEeccccccch
Q 003268 395 SLLGSRVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 395 ~~L~~~l~~~~l~lVIIDEaHr~g~ 419 (835)
.+...+.+.++++||+-+++.+|+
T Consensus 504 -~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 504 -LLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp -CCSTTCCCTTEEEEEETTTTCCTT
T ss_pred -hhhCCcccCCCCEEEEeCcccccC
Confidence 566678888999999999998876
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.85 E-value=0.023 Score=60.97 Aligned_cols=37 Identities=24% Similarity=0.164 Sum_probs=24.6
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+..++++||+|+|||..+-..+-.....+..++++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3568999999999999875433333333355566554
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.82 E-value=0.019 Score=57.87 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
+..++..+.... ..+.+..++++||+|+|||..+-..+
T Consensus 36 ~~~~~~~l~~~~-~~~~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 36 NDELIGALKSAA-SGDGVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp CHHHHHHHHHHH-HTCSCSEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 345555554433 33456889999999999998764433
No 130
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.80 E-value=0.043 Score=65.32 Aligned_cols=99 Identities=16% Similarity=0.262 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecch
Q 003268 315 GKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394 (835)
Q Consensus 315 GKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~ 394 (835)
|+....+..+......+.+++|.++|+.-+..+++.+.+. |+.+.++++..+..++...++.+..|.++|+|||
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT- 496 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI- 496 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-
Confidence 4433333344444567889999999999999988888763 6889999999999999999999999999999999
Q ss_pred HhhhcccccccccEEEeccccccch
Q 003268 395 SLLGSRVVYNNLGLLVVDEEQRFGV 419 (835)
Q Consensus 395 ~~L~~~l~~~~l~lVIIDEaHr~g~ 419 (835)
..+...+.+.++++||+=+++.+|+
T Consensus 497 ~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 497 NLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp CCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred ChhhcCccCCCCCEEEEeCCcccCC
Confidence 5667778889999999999988876
No 131
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.78 E-value=0.034 Score=55.46 Aligned_cols=75 Identities=7% Similarity=0.188 Sum_probs=65.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|+.+|+|+| ..+...+++.++++||
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~~~~Gldi~~v~~VI 127 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASKGLDFPAIQHVI 127 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHTTCCCCCCSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-CchhcCCCcccCCEEE
Confidence 568999999999999999888764 6889999999999999999999999999999999 5566667888888887
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 128 ~ 128 (191)
T 2p6n_A 128 N 128 (191)
T ss_dssp E
T ss_pred E
Confidence 6
No 132
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.76 E-value=0.023 Score=68.87 Aligned_cols=92 Identities=16% Similarity=0.317 Sum_probs=76.5
Q ss_pred HHHHhcCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-CccCCCCCC
Q 003268 486 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-VESGLDIQN 562 (835)
Q Consensus 486 ~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-ie~GIDIp~ 562 (835)
...+..+.+++|++|++.-++..++.+.+.++ ++++..+||+++..++...+..+.+|+.+|+|+|.- +...+++.+
T Consensus 411 l~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~ 490 (780)
T 1gm5_A 411 LDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKN 490 (780)
T ss_dssp HHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSC
T ss_pred HHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccC
Confidence 33445688999999999888888888877764 689999999999999999999999999999999974 445678899
Q ss_pred cCEEEEecCCCCCHh
Q 003268 563 ANTIIVQDVQQFGLA 577 (835)
Q Consensus 563 v~~VIi~d~p~~sl~ 577 (835)
+.+||+..++.|+..
T Consensus 491 l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 491 LGLVIIDEQHRFGVK 505 (780)
T ss_dssp CCEEEEESCCCC---
T ss_pred CceEEecccchhhHH
Confidence 999999988887644
No 133
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.74 E-value=0.049 Score=55.04 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=73.6
Q ss_pred CCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEe
Q 003268 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIV 391 (835)
Q Consensus 312 TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIII 391 (835)
.-..|..+. .-++.. ..+.+++|.+|++.-+..+++.+... ++.+..++|..+..++...++.+.+|..+|+|
T Consensus 14 ~~~~k~~~l-~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 14 PVRGRLEVL-SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CTTSHHHHH-HHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred CHHHHHHHH-HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 345665543 333332 45779999999999999998888764 68899999999999999999999999999999
Q ss_pred cchHhhhcccccccccEEEe
Q 003268 392 GTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 392 gT~~~L~~~l~~~~l~lVII 411 (835)
+| ..+...+++.++++||.
T Consensus 87 aT-~~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 87 AT-DVAARGLDIPQVDLVVH 105 (212)
T ss_dssp EC-TTTTCSSSCCCBSEEEE
T ss_pred ec-ChhhcCCCCccCcEEEE
Confidence 99 45666678888888885
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.064 Score=58.40 Aligned_cols=40 Identities=25% Similarity=0.192 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
+..+.+.+...+..+..+..+..++++||+|+|||..+-.
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHH
Confidence 4455555554444433345567899999999999987643
No 135
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.52 E-value=0.018 Score=69.26 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC----CCEEEEEcccHHHHHHHHHHHHHhh
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA----GKQAMVLAPTIVLAKQHFDVVSERF 355 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~----g~qvlVLvPtr~La~Q~~~~~~~~f 355 (835)
-.++|.|.+|+... ...++|.|..|||||.+...-+...+.. ..++++++.|+..|.++.+++...+
T Consensus 10 ~~Ln~~Q~~av~~~---------~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT---------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC---------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC---------CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 36899999997531 3568999999999999987666655543 2589999999999999999998765
Q ss_pred cCC-CCcEEEEecCC
Q 003268 356 SKY-PDIKVGLLSRF 369 (835)
Q Consensus 356 ~~~-~gi~V~~l~g~ 369 (835)
+.. .++.|..++++
T Consensus 81 ~~~~~~~~v~Tfhs~ 95 (724)
T 1pjr_A 81 GGAAEDVWISTFHSM 95 (724)
T ss_dssp GGGGTTSEEEEHHHH
T ss_pred cccccCcEEeeHHHH
Confidence 432 24677776653
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.45 E-value=0.096 Score=52.05 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.+..++++||+|+|||..+-.
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345789999999999987543
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.44 E-value=0.15 Score=54.76 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=17.3
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
.....+|++||+|+|||..+-
T Consensus 53 ~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 345689999999999998753
No 138
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.36 E-value=0.084 Score=51.89 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 287 ~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
..++..+...+.. .....++++||+|+|||..+-.
T Consensus 23 ~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 23 DEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp HHHHHHHHHHHHT-TCCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHH
Confidence 3344444433322 3334599999999999986533
No 139
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.21 E-value=0.11 Score=55.69 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
|.+++..+.+.+..+. ....|++||.|+|||..+...
T Consensus 2 ~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp --CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHH
Confidence 5566666666554433 567899999999999876443
No 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.20 E-value=0.065 Score=57.26 Aligned_cols=36 Identities=22% Similarity=0.071 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val 321 (835)
|..++..+...+..+..+.-+|+.||+|+|||..+-
T Consensus 31 ~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 31 PAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 334444444433333444556778889999998753
No 141
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.11 E-value=0.024 Score=72.18 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCC------CEEEEEcccHHHHHHHHHHHHH
Q 003268 280 YEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAG------KQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 280 ~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g------~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
..+|+.|.+||.. . +.+++|.|..|||||.+.+.-+...+..+ .+++++++|+..|..+.+++..
T Consensus 9 ~~~t~eQ~~~i~~--------~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--------T-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHC--------C-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--------C-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 4789999999743 1 46899999999999999877766666553 4899999999999999999887
Q ss_pred hhc
Q 003268 354 RFS 356 (835)
Q Consensus 354 ~f~ 356 (835)
.+.
T Consensus 80 ~l~ 82 (1232)
T 3u4q_A 80 ALE 82 (1232)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 142
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.05 E-value=0.075 Score=58.36 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=71.3
Q ss_pred HHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhc
Q 003268 320 ALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGS 399 (835)
Q Consensus 320 al~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~ 399 (835)
++..++.....+.+++|.++++.-+..+++.+.+. ++.+..+++..+..++...++.+.+|+.+|+|+|. .+..
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~ 338 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAAR 338 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-HHHT
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hhhc
Confidence 34444444445789999999999999998888763 68899999999999999999999999999999996 5666
Q ss_pred ccccccccEEEe
Q 003268 400 RVVYNNLGLLVV 411 (835)
Q Consensus 400 ~l~~~~l~lVII 411 (835)
.+++.++++||.
T Consensus 339 Gidip~v~~Vi~ 350 (417)
T 2i4i_A 339 GLDISNVKHVIN 350 (417)
T ss_dssp TSCCCCEEEEEE
T ss_pred CCCcccCCEEEE
Confidence 788888888875
No 143
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.01 E-value=0.17 Score=57.12 Aligned_cols=117 Identities=19% Similarity=0.196 Sum_probs=62.4
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc--ccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLD 380 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv--Ptr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~ 380 (835)
+.-++++|++|+|||+.+...+......|++|+++. +.+.-+.+....+.... ++.+.......+... ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~----gv~~~~~~~~~dp~~---i~~ 169 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQI----GVQVYGEPNNQNPIE---IAK 169 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTT----TCCEECCTTCSCHHH---HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhc----CCceeeccccCCHHH---HHH
Confidence 567888999999999987655554455678887765 44443433333333322 344333322222111 000
Q ss_pred hHhcCCcceEecchHhhhcccccccccEEEeccccccc--hh-----hHHH-HHhhcCCceEEEeecCC
Q 003268 381 MIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFG--VK-----QKEK-IASFKISVDVLTLSATP 441 (835)
Q Consensus 381 ~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g--~~-----~~e~-l~~~~~~~~vL~lSATp 441 (835)
..+ ......++++||||++-+.. .. .... .....+..-++.++|+.
T Consensus 170 --------------~al-~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 --------------KGV-DIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp --------------HHH-HHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --------------HHH-HHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 011 12234578999999998755 21 1111 22233455566677764
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.99 E-value=0.12 Score=55.81 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=18.6
Q ss_pred CCCCCcEEEEccCCCccHHHHHH
Q 003268 300 RETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 300 ~~~~~d~LI~g~TGsGKT~val~ 322 (835)
...+..++++||+|+|||..+-.
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHH
Confidence 35567899999999999987533
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.90 E-value=0.13 Score=54.20 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=17.8
Q ss_pred CCCCcEEEEccCCCccHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~ 322 (835)
..+.++|++||+|+|||..+-.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3456799999999999987643
No 146
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.78 E-value=0.19 Score=57.93 Aligned_cols=82 Identities=15% Similarity=0.233 Sum_probs=70.4
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++.-+..+++.+.+.+.. ++.+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-VGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-GGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-hhhcCCCcccCCE
Confidence 45789999999999999999999876543 57899999999999999999999999999999995 5566788888998
Q ss_pred EEecc
Q 003268 409 LVVDE 413 (835)
Q Consensus 409 VIIDE 413 (835)
||.-.
T Consensus 414 VI~~~ 418 (563)
T 3i5x_A 414 VLQIG 418 (563)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88644
No 147
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.76 E-value=0.099 Score=66.09 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=81.7
Q ss_pred HHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccc
Q 003268 323 AIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 323 a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~ 402 (835)
.+...+..+.+++|++|++.-+..+++.+++.+ |+.++..++|..+..++...+..+.+|+++|+|+|. .+...++
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-v~e~GiD 879 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGID 879 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-TTGGGSC
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-cceeeec
Confidence 344556678999999999998999999888753 578899999999999999999999999999999995 5666788
Q ss_pred cccccEEEeccccccchhhH
Q 003268 403 YNNLGLLVVDEEQRFGVKQK 422 (835)
Q Consensus 403 ~~~l~lVIIDEaHr~g~~~~ 422 (835)
+.++++||+..++.++..+.
T Consensus 880 ip~v~~VIi~~~~~~~l~~l 899 (1151)
T 2eyq_A 880 IPTANTIIIERADHFGLAQL 899 (1151)
T ss_dssp CTTEEEEEETTTTSSCHHHH
T ss_pred ccCCcEEEEeCCCCCCHHHH
Confidence 99999999998988876543
No 148
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.74 E-value=0.038 Score=52.87 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+..++++|++|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997653
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.68 E-value=0.15 Score=55.19 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
|..++..+...+..+..+..++++||.|+|||..+-.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~ 57 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARL 57 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHH
Confidence 4444444444443333345689999999999987643
No 150
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=94.65 E-value=0.11 Score=55.75 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEec
Q 003268 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVG 392 (835)
Q Consensus 313 GsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIg 392 (835)
...|..+ +.-++.. ..+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|..+|+|+
T Consensus 12 ~~~K~~~-L~~ll~~-~~~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVa 84 (300)
T 3i32_A 12 VRGRLEV-LSDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVA 84 (300)
T ss_dssp SSSHHHH-HHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEE
T ss_pred HHHHHHH-HHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEE
Confidence 3566544 3333333 34789999999999998888877653 688999999999999999999999999999999
Q ss_pred chHhhhcccccccccEEEecc
Q 003268 393 THSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 393 T~~~L~~~l~~~~l~lVIIDE 413 (835)
| ..+...+.+.++.+||.=+
T Consensus 85 T-~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 85 T-DVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp C-STTTCSTTCCCCSEEEESS
T ss_pred e-chhhcCccccceeEEEEcC
Confidence 9 4555567788888888533
No 151
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.64 E-value=0.035 Score=52.35 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.2
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.+.+++++|++|+|||..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH
T ss_pred CCCcEEEECCCCccHHHHH
Confidence 3568999999999999764
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.52 E-value=0.029 Score=63.59 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
....+|++||+|+|||..+-
T Consensus 49 ~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHH
Confidence 34679999999999998763
No 153
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.51 E-value=0.066 Score=63.41 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPD 360 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~g 360 (835)
.+|.+|.+|+..+.... ...++|.|+-|.|||.+.-+++.... ..++|.+|+..-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~-~~~~------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQ-FAGE------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHH-HHGG------
T ss_pred CCCHHHHHHHHHHHHhh-----hCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHH-HhhC------
Confidence 78999999998887532 13479999999999966544443332 347999999876654322 2110
Q ss_pred cEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHhhcCCceEEEeecC
Q 003268 361 IKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIASFKISVDVLTLSAT 440 (835)
Q Consensus 361 i~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~~~~~~~vL~lSAT 440 (835)
.|-+..|..+.. ...+.++||||||=.+.....+.+.. ....++||-|
T Consensus 240 ---------------------------~i~~~~Pd~~~~--~~~~~dlliVDEAAaIp~pll~~ll~---~~~~v~~~tT 287 (671)
T 2zpa_A 240 ---------------------------KFRFIAPDALLA--SDEQADWLVVDEAAAIPAPLLHQLVS---RFPRTLLTTT 287 (671)
T ss_dssp ---------------------------GCCBCCHHHHHH--SCCCCSEEEEETGGGSCHHHHHHHHT---TSSEEEEEEE
T ss_pred ---------------------------CeEEeCchhhhh--CcccCCEEEEEchhcCCHHHHHHHHh---hCCeEEEEec
Confidence 022334443321 23468999999999988877666654 3345778888
Q ss_pred CC
Q 003268 441 PI 442 (835)
Q Consensus 441 p~ 442 (835)
..
T Consensus 288 v~ 289 (671)
T 2zpa_A 288 VQ 289 (671)
T ss_dssp BS
T ss_pred CC
Confidence 63
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.49 E-value=0.16 Score=57.20 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999998753
No 155
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.42 E-value=0.33 Score=50.45 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=18.0
Q ss_pred CCCCcEEEEccCCCccHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~ 322 (835)
..+..+|++||+|+|||..+-.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHH
Confidence 4467899999999999987643
No 156
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.42 E-value=0.22 Score=51.60 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.+..++++|++|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3578999999999999765
No 157
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.33 E-value=0.14 Score=56.45 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=74.2
Q ss_pred CCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC--------CCCHHHHHHHHHh
Q 003268 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR--------FQSKAEKEEHLDM 381 (835)
Q Consensus 312 TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g--------~~s~~e~~~~l~~ 381 (835)
..++|.......+.... ..+.+++|.++++.-+..+++.+... ++.+..++| ..+..++...++.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 34667655444333333 45789999999999999988888764 678999999 7788888999999
Q ss_pred HhcCCcceEecchHhhhcccccccccEEEecccc
Q 003268 382 IKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 382 l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaH 415 (835)
+.+|.++|+|+| ..+...+++.++++||+-+..
T Consensus 415 F~~~~~~vLv~T-~~~~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 415 FARGEFNVLVAT-SVGEEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHTSCSEEEEC-GGGGGGGGSTTCCEEEESSCC
T ss_pred HhcCCceEEEEC-CccccCCCchhCCEEEEeCCC
Confidence 999999999999 567777888889988865543
No 158
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.29 E-value=0.2 Score=58.29 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=71.2
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++|+.-+..+++.+...+.. ++.+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-VGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-GGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-hhhcCCCcccCCE
Confidence 34679999999999999999999876543 57899999999999999999999999999999995 5556678888999
Q ss_pred EEecccc
Q 003268 409 LVVDEEQ 415 (835)
Q Consensus 409 VIIDEaH 415 (835)
||.-..-
T Consensus 363 VI~~~~p 369 (579)
T 3sqw_A 363 VLQIGVP 369 (579)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 8875543
No 159
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.25 E-value=0.069 Score=56.45 Aligned_cols=20 Identities=40% Similarity=0.443 Sum_probs=16.4
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
..++++||+|+|||..+-..
T Consensus 48 ~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHH
Confidence 36899999999999876433
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.96 E-value=0.048 Score=51.52 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.1
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..+.++++.|++|+|||.++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34678999999999999876
No 161
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.95 E-value=0.23 Score=54.23 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.+... +..+..++|..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VCARGIDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GGTSSCCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-ccccCCCccCCCEE
Confidence 5679999999999999999888763 67899999999999999999999999999999994 56667888889998
Q ss_pred Ee
Q 003268 410 VV 411 (835)
Q Consensus 410 II 411 (835)
|.
T Consensus 339 i~ 340 (412)
T 3fht_A 339 IN 340 (412)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.94 E-value=0.15 Score=51.27 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=32.2
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
..+++.+..|.|||.+++-.++.++..|.+|+|+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46889999999999999999999999999999995
No 163
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.94 E-value=0.33 Score=52.09 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..+|++||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5679999999999998763
No 164
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=93.91 E-value=0.14 Score=55.53 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.+... ++.+..+++..+..++...++.+.+|+.+|+|+| ..+...+++.++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gidi~~~~~V 322 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGRGMDIERVNIA 322 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEES-CCCSSCBCCTTEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEEC-ChhhcCCCcccCCEE
Confidence 5789999999999999998888763 6789999999999999999999999999999999 456667788889998
Q ss_pred Eeccc
Q 003268 410 VVDEE 414 (835)
Q Consensus 410 IIDEa 414 (835)
|.-..
T Consensus 323 i~~~~ 327 (391)
T 1xti_A 323 FNYDM 327 (391)
T ss_dssp EESSC
T ss_pred EEeCC
Confidence 87544
No 165
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.85 E-value=0.16 Score=54.90 Aligned_cols=81 Identities=12% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.++.. +..+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-VLARGIDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-GGSSSCCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-hhhcCCCcccCCEE
Confidence 4678999999999999998888763 67899999999999999999999999999999994 56667888899999
Q ss_pred Eeccccc
Q 003268 410 VVDEEQR 416 (835)
Q Consensus 410 IIDEaHr 416 (835)
|.-..-.
T Consensus 316 i~~~~p~ 322 (395)
T 3pey_A 316 VNYDLPT 322 (395)
T ss_dssp EESSCCB
T ss_pred EEcCCCC
Confidence 8755543
No 166
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.82 E-value=0.15 Score=54.49 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=66.5
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++.-+..+++.+.+. +..+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gid~~~~~~ 309 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSRGIDVNDLNC 309 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHHHCCCSCCSE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhcCCCcccCCE
Confidence 34678999999999999988888763 67899999999999999999999999999999994 5555677888888
Q ss_pred EEec
Q 003268 409 LVVD 412 (835)
Q Consensus 409 VIID 412 (835)
||.-
T Consensus 310 Vi~~ 313 (367)
T 1hv8_A 310 VINY 313 (367)
T ss_dssp EEES
T ss_pred EEEe
Confidence 8864
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.80 E-value=0.37 Score=50.82 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
|..++..+...+.. .....++++||+|+|||..+-.
T Consensus 30 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 30 QEHIVKRLKHYVKT-GSMPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp CHHHHHHHHHHHHH-TCCCEEEEESCTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCCCeEEEECcCCCCHHHHHHH
Confidence 44455544443323 2334599999999999987643
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.68 E-value=0.53 Score=48.98 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..+..+|++||+|+|||..+-
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 456789999999999998753
No 169
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=93.60 E-value=0.28 Score=55.76 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=67.7
Q ss_pred HHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhccccccc
Q 003268 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNN 405 (835)
Q Consensus 326 ~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~ 405 (835)
.....+.+.++++..+.-+..+++.+.+ . +.++..++|..+..++...++.+.+|+.+|+|+|...+...+++.+
T Consensus 342 ~~~~~~~~~~ivf~~~~~~~~l~~~L~~----~-~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~ 416 (510)
T 2oca_A 342 KLAQKDENAFVMFKHVSHGKAIFDLIKN----E-YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN 416 (510)
T ss_dssp HHHTTTCEEEEEESSHHHHHHHHHHHHT----T-CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS
T ss_pred HHHhcCCCeEEEEecHHHHHHHHHHHHH----c-CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccccc
Confidence 3344556666666666556555555554 2 3489999999999999999999999999999999999988899999
Q ss_pred ccEEEeccccc
Q 003268 406 LGLLVVDEEQR 416 (835)
Q Consensus 406 l~lVIIDEaHr 416 (835)
+.+||+.....
T Consensus 417 v~~vi~~~~~~ 427 (510)
T 2oca_A 417 LHHVVLAHGVK 427 (510)
T ss_dssp EEEEEESSCCC
T ss_pred CcEEEEeCCCC
Confidence 99999988774
No 170
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.51 E-value=0.19 Score=54.84 Aligned_cols=77 Identities=9% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.+.+. ++.+..+++..+..++...++.+.+|+.+|+|+| ..+...+++.++++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T-~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCS-DLLTRGIDIQAVNVV 330 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEES-SCSSSSCCCTTEEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CccccCCCccCCCEE
Confidence 5679999999999999999888764 6789999999999999999999999999999999 455666788888888
Q ss_pred Eec
Q 003268 410 VVD 412 (835)
Q Consensus 410 IID 412 (835)
|.-
T Consensus 331 i~~ 333 (400)
T 1s2m_A 331 INF 333 (400)
T ss_dssp EES
T ss_pred EEe
Confidence 853
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.50 E-value=0.64 Score=49.20 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+..++++||+|+|||..+-
T Consensus 37 ~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 35689999999999998753
No 172
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.45 E-value=0.12 Score=51.41 Aligned_cols=122 Identities=13% Similarity=0.188 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHH-HhCCCEEEEEcccHHHHHHHHHHHHHhhcCCC
Q 003268 281 EPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCV-VSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP 359 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~-~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~ 359 (835)
..++.|..|+..++.+- +.-.+|.|.-|++||...+..+... -..|++|.+|+|+..-.....+...
T Consensus 34 ~~~~~~~~a~~~l~~s~-----~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~------- 101 (189)
T 2l8b_A 34 PRTAGYSDAVSVLAQDR-----PSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDER------- 101 (189)
T ss_dssp CCHHHHHHHHHHHHHHS-----CCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTT-------
T ss_pred ccCccchhHHHHHhccC-----CceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcC-------
Confidence 34578999999887632 3557889999999998854444433 3468999999999876554222211
Q ss_pred CcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEeccccccchhhHHHHHh--hcCCceEEEe
Q 003268 360 DIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRFGVKQKEKIAS--FKISVDVLTL 437 (835)
Q Consensus 360 gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~g~~~~e~l~~--~~~~~~vL~l 437 (835)
.. | -+++.+..+.....|..=+++|||||-.++.+..-.|.. ...+.++|++
T Consensus 102 -l~----------------------~---~t~t~~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll 155 (189)
T 2l8b_A 102 -LS----------------------G---ELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLIT 155 (189)
T ss_dssp -CS----------------------S---CSSSTTTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred -cC----------------------c---ceeehhhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEe
Confidence 11 1 112444445555556666799999999998865544432 3467888776
Q ss_pred ecC
Q 003268 438 SAT 440 (835)
Q Consensus 438 SAT 440 (835)
--+
T Consensus 156 ~~~ 158 (189)
T 2l8b_A 156 DSG 158 (189)
T ss_dssp ESS
T ss_pred CCc
Confidence 443
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.38 E-value=0.81 Score=49.40 Aligned_cols=40 Identities=28% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhcCC-CCCcEEEEccCCCccHHHHHHH
Q 003268 284 PDQKKAFLDVERDLTERE-TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 284 p~Q~~AI~~Il~~l~~~~-~~~d~LI~g~TGsGKT~val~a 323 (835)
+.+.+++..+...+..+. .+..+|++||+|+|||..+-..
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 444444444444332222 2468999999999999876443
No 174
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.29 E-value=0.35 Score=53.34 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..+|++||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998763
No 175
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.20 E-value=1 Score=49.12 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCccHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~ 322 (835)
+..+|++||+|+|||..+-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 46799999999999987643
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.19 E-value=0.4 Score=51.65 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 284 PDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 284 p~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
..+.+.+...+........+..++|+||.|+|||..+-.
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHH
Confidence 344444443333221245567899999999999987543
No 177
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.16 E-value=0.3 Score=52.62 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
|..++..+...+..+.-+ .++++||.|+|||..+...
T Consensus 30 ~~~~~~~L~~~i~~g~~~-~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLP-HLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp CHHHHHHHHHHHHTTCCC-CEEEECSSSSSHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCc-eEEEECCCCCCHHHHHHHH
Confidence 566666665555433323 3899999999999876443
No 178
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.93 Score=50.50 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..++.+|+.||+|+|||..+-
T Consensus 180 ~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHH
Confidence 446789999999999998653
No 179
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.08 E-value=0.35 Score=54.10 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+++|+.+|+|+|. .+...+++.++++||
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-v~~rGlDi~~v~~VI 373 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-VASRGLDIKNIKHVI 373 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-GGTSSCCCTTCCEEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-hhhCCCCcccCCEEE
Confidence 334999999999999998888763 67899999999999999999999999999999996 555678888888888
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 374 ~ 374 (434)
T 2db3_A 374 N 374 (434)
T ss_dssp E
T ss_pred E
Confidence 5
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.06 E-value=0.18 Score=49.86 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhhhcCC---CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 283 TPDQKKAFLDVERDLTERE---TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~---~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.+.|.+++..+.+.+.... .+..++++||+|+|||..+-..+-.....+..++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 31 DDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp SHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3466667665554332221 127899999999999987644433343445555544
No 181
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.00 E-value=0.48 Score=57.05 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=16.0
Q ss_pred cEEEEccCCCccHHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a 323 (835)
.+|++||||+|||..+-..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5999999999999886433
No 182
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=92.14 E-value=0.018 Score=56.02 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=63.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.+... ++.+..++|..+..++...++.+.+|..+|+|+| ..+...+++.++++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gid~~~~~~V 102 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAARGIDIPDVSHV 102 (170)
Confidence 3568999999999888888777653 6789999999888889899999999999999999 556666777777777
Q ss_pred Eec
Q 003268 410 VVD 412 (835)
Q Consensus 410 IID 412 (835)
|.-
T Consensus 103 i~~ 105 (170)
T 2yjt_D 103 FNF 105 (170)
Confidence 753
No 183
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.95 E-value=0.28 Score=57.53 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+.++++.+... |+.+..++++.+..++...++.+.+|+.+|+|+|. .+...+++.++.+|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-a~~~GID~p~V~~V 339 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-AFGMGIDKPDVRFV 339 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-TSCTTCCCSCEEEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-hhhcCCCcccccEE
Confidence 5789999999999999999988763 68899999999999999999999999999999995 45556778888888
Q ss_pred Ee
Q 003268 410 VV 411 (835)
Q Consensus 410 II 411 (835)
|.
T Consensus 340 I~ 341 (591)
T 2v1x_A 340 IH 341 (591)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 184
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.95 E-value=0.25 Score=54.18 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=66.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
...+++|.++++.-+..+++.+.+. ++.+..++|..+..++...++.+.+|..+|+|+|. .+...+++.++++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidi~~v~~V 348 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-VWARGLDVPQVSLI 348 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-GGSSSCCCTTEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-hhhCcCCcccCCEE
Confidence 3568999999999999988888763 67899999999999999999999999999999995 55666788888888
Q ss_pred Eec
Q 003268 410 VVD 412 (835)
Q Consensus 410 IID 412 (835)
|.-
T Consensus 349 i~~ 351 (410)
T 2j0s_A 349 INY 351 (410)
T ss_dssp EES
T ss_pred EEE
Confidence 863
No 185
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.76 E-value=0.4 Score=51.56 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhh-hcCCCCCcEEEEccCCCccHHHHH
Q 003268 286 QKKAFLDVERDL-TERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 286 Q~~AI~~Il~~l-~~~~~~~d~LI~g~TGsGKT~val 321 (835)
|..++..+...+ ..+..+. ++++||.|+|||..+-
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHH
Confidence 556666665544 3333344 9999999999998754
No 186
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.74 E-value=0.23 Score=53.12 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=17.0
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..+..+|++|++|+|||.++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34678999999999999875
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.60 E-value=0.51 Score=51.41 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=17.6
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..+..+|++||+|+|||..+-
T Consensus 115 ~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 346789999999999998764
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.53 E-value=0.41 Score=55.02 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
+..+|++||+|+|||..+-..+ ..+ +..++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la-~~l--~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVA-QEL--GYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH-HHT--TCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HHc--CCCEEEE
Confidence 4689999999999998764333 222 4445444
No 189
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.52 E-value=0.26 Score=56.74 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++|+.-+.++++.+... ++.+..++++.+..++....+.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-a~~~GiD~p~v~~V 308 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-AFGMGINKPNVRFV 308 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-TSCTTTCCTTCCEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-hhhCCCCccCccEE
Confidence 5678999999999999999988763 68899999999999999999999999999999996 44556778888888
Q ss_pred Ee
Q 003268 410 VV 411 (835)
Q Consensus 410 II 411 (835)
|.
T Consensus 309 I~ 310 (523)
T 1oyw_A 309 VH 310 (523)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 190
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.50 E-value=0.21 Score=52.60 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
|..++..+...+.. .....++++||+|+|||..+-..
T Consensus 22 ~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 22 QDEVIQRLKGYVER-KNIPHLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CHHHHHHHHTTTTT-TCCCCEEEESSSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhC-CCCCeEEEECcCCcCHHHHHHHH
Confidence 55566666554433 33335999999999999876433
No 191
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.50 E-value=1.5 Score=41.58 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 288 ~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
..+..+...+. ...+..++++|++|+|||..+-..
T Consensus 29 ~~~~~l~~~l~-~~~~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 29 EEIRRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp HHHHHHHHHHT-SSSSCEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCCceEEECCCCCCHHHHHHHH
Confidence 34444444332 344578999999999999876433
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.41 E-value=1.4 Score=44.80 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+..+|++||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35679999999999998754
No 193
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.29 E-value=0.39 Score=54.84 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=63.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCC--------CC---
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRF--------QS--- 371 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~--------~s--- 371 (835)
+....+.|-||||||.+....+ . ..++.++|++|+...|.|+++.++..+. . .|.++... ..
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~-~--~~~~p~lvv~~~~~~A~~l~~~l~~~~~---~-~v~~fp~~e~lpyd~~~p~~~ 86 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIA-E--RHAGPVVLIAPDMQNALRLHDEISQFTD---Q-MVMNLADWETLPYDSFSPHQD 86 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHH-H--HSSSCEEEEESSHHHHHHHHHHHHHTCS---S-CEEECCCCCSCTTCSSCCCHH
T ss_pred CCeEEEeCCCchHHHHHHHHHH-H--HhCCCEEEEeCCHHHHHHHHHHHHhhCC---C-cEEEEeCcccccccccCCChH
Confidence 4567899999999997543322 1 2366799999999999999999987432 2 25544332 11
Q ss_pred -HHHHHHHHHhHhcCCcceEecchHhhhcccc
Q 003268 372 -KAEKEEHLDMIKHGHLNIIVGTHSLLGSRVV 402 (835)
Q Consensus 372 -~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~ 402 (835)
..++-..+..+..++..|||+|...+...+.
T Consensus 87 ~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~ 118 (483)
T 3hjh_A 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 (483)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCC
Confidence 1234455667777778899999888876543
No 194
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.05 E-value=0.48 Score=53.45 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=35.5
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc--ccHHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAKQHFDVVSE 353 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv--Ptr~La~Q~~~~~~~ 353 (835)
+.-++++|++|+|||+.+...+......|++++++. |.+.-+.+....+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 567889999999999997666655556788887766 555555444444443
No 195
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.92 E-value=0.52 Score=50.38 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH
Q 003268 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 287 ~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val 321 (835)
..++..+...+.. ....+++++||+|+|||..+-
T Consensus 43 ~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 43 DHAVTVLKKTLKS-ANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CTTHHHHHHHTTC-TTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH
Confidence 3344444443422 222459999999999998753
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.92 E-value=1.4 Score=46.60 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=17.4
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..+..++++||+|+|||..+-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 346789999999999998753
No 197
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.84 E-value=0.34 Score=51.02 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
|..++..+...+..+ ....++++||.|+|||..+-..
T Consensus 26 ~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 26 NKETIDRLQQIAKDG-NMPHMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp CTHHHHHHHHHHHSC-CCCCEEEECSTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHH
Confidence 344444444433332 3234999999999999875433
No 198
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.55 E-value=0.31 Score=53.77 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=68.8
Q ss_pred HhcCCeEEEEecCccChHHHHHHHHhhCC-CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-----CccCCCCCC
Q 003268 489 LDRGGQVFYVLPRIKGLEEPMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VESGLDIQN 562 (835)
Q Consensus 489 l~~ggqvlVf~~~v~~ie~l~~~L~~~~p-~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-----ie~GIDIp~ 562 (835)
...+++++|++|+++-+..+++.++...+ ++.+..+||+.+..++...+..+..|..+|+|+|+- +.. ++..+
T Consensus 61 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~ 139 (414)
T 3oiy_A 61 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKR 139 (414)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCC
T ss_pred hcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hcccc
Confidence 35788999999999999999999988654 789999999999999889999999999999999973 222 55667
Q ss_pred cCEEEEecC
Q 003268 563 ANTIIVQDV 571 (835)
Q Consensus 563 v~~VIi~d~ 571 (835)
+++||+..+
T Consensus 140 ~~~iViDEa 148 (414)
T 3oiy_A 140 FDFVFVDDV 148 (414)
T ss_dssp CSEEEESCH
T ss_pred ccEEEEeCh
Confidence 888887666
No 199
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=91.42 E-value=0.55 Score=49.36 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=72.7
Q ss_pred CCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcC-CcceE
Q 003268 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNII 390 (835)
Q Consensus 312 TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g-~~dII 390 (835)
..+||-......+......+.+++|.+.++..+..+...+...+ |+.+..++|..+..++...++...++ .++|+
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~ 168 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFI 168 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEE
Confidence 46889876555544555678899999999998888888776543 46788899999999999999999988 67755
Q ss_pred ecchHhhhcccccccccEEEe
Q 003268 391 VGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 391 IgT~~~L~~~l~~~~l~lVII 411 (835)
+.+.......+++...+.||+
T Consensus 169 L~st~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 169 VLSVKAGGFGINLTSANRVIH 189 (271)
T ss_dssp EEECCTTCCCCCCTTCSEEEE
T ss_pred EEehhhhcCCcCcccCCEEEE
Confidence 555566666677777777665
No 200
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.23 E-value=1.6 Score=49.81 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=17.4
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..+..+|++||+|+|||.++
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 45678999999999999876
No 201
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.20 E-value=1.4 Score=47.25 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
++.+|++||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4689999999999998753
No 202
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.47 E-value=1.1 Score=48.87 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHH-HhhhcC--CCCCcEEE--EccCCCccHHHHHH
Q 003268 283 TPDQKKAFLDVE-RDLTER--ETPMDRLI--CGDVGFGKTEVALR 322 (835)
Q Consensus 283 tp~Q~~AI~~Il-~~l~~~--~~~~d~LI--~g~TGsGKT~val~ 322 (835)
+..+.+.+...+ .....+ ..+..++| +|+.|+|||..+-.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHH
Confidence 445666665555 433223 34567888 99999999987543
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.31 E-value=0.77 Score=56.12 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.1
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
..+.+++++||+|+|||..+-..+-
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHH
Confidence 4456899999999999987644433
No 204
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.16 E-value=0.23 Score=54.34 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.+... ++.+..+++..+..++...++.+.+|..+|+|+|. .+...+++.++++|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~~~Gidip~v~~V 352 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-LLARGIDVQQVSLV 352 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-SCC--CCGGGCSCE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-ccccCCCccCCCEE
Confidence 3568999999999999888888753 67899999999999999999999999999999995 44556777788887
Q ss_pred Eec
Q 003268 410 VVD 412 (835)
Q Consensus 410 IID 412 (835)
|.-
T Consensus 353 i~~ 355 (414)
T 3eiq_A 353 INY 355 (414)
T ss_dssp EES
T ss_pred EEe
Confidence 753
No 205
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.09 E-value=2.6 Score=47.76 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=17.3
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..++.+|+.||.|+|||..+
T Consensus 241 ~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 44788999999999999765
No 206
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.00 E-value=0.72 Score=52.05 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=39.8
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHH
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVV 351 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~ 351 (835)
.++.+..++ +.+.-++|.|++|+|||..++..+..... .|..|+++...-. ..|+..++
T Consensus 192 ~LD~~~gGl---~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGF---QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp HHHHHHSSB---CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred HHHhhcCCC---CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 566666444 44667899999999999988777766554 4667888764322 24555554
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.93 E-value=1.6 Score=49.10 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+..+|++||+|+|||..+-
T Consensus 166 ~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998753
No 208
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.80 E-value=0.84 Score=57.39 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=70.0
Q ss_pred HHHHhcCCeEEEEecCccChHHHHHHHHhhC-CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-----CccCCC
Q 003268 486 KYELDRGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VESGLD 559 (835)
Q Consensus 486 ~~~l~~ggqvlVf~~~v~~ie~l~~~L~~~~-p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-----ie~GID 559 (835)
...+..+.+++|++|+++-+..+++.++... .++.+..+||+++..++...+..+.+|..+|+|+|+- +.. ++
T Consensus 115 l~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~ 193 (1104)
T 4ddu_A 115 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LS 193 (1104)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HH
T ss_pred HHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hc
Confidence 3334678899999999999999999998843 3679999999999988889999999999999999962 222 56
Q ss_pred CCCcCEEEEecC
Q 003268 560 IQNANTIIVQDV 571 (835)
Q Consensus 560 Ip~v~~VIi~d~ 571 (835)
..++.+||+..+
T Consensus 194 ~~~l~~lViDEa 205 (1104)
T 4ddu_A 194 QKRFDFVFVDDV 205 (1104)
T ss_dssp TSCCSEEEESCH
T ss_pred ccCcCEEEEeCC
Confidence 678999998666
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.75 E-value=8.9 Score=43.85 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
+..++++|.+|+|||+.+...+......|.+++++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4568889999999999876665555556788877764
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.62 E-value=0.086 Score=63.50 Aligned_cols=18 Identities=44% Similarity=0.715 Sum_probs=15.7
Q ss_pred cEEEEccCCCccHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALR 322 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~ 322 (835)
.+|++||+|+|||..+-.
T Consensus 490 ~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 699999999999988643
No 211
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.47 E-value=0.34 Score=55.16 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=44.4
Q ss_pred CCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEE--------EecCCCCHHHHHHHHHh
Q 003268 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVG--------LLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 312 TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~--------~l~g~~s~~e~~~~l~~ 381 (835)
..++|-......+.... ..+.+++|.++++..+..+++.+... ..++++++. .++++.+..++...++.
T Consensus 369 ~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 447 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTC-SGGGSCCEEC------------------------
T ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhC-CCcceeeeeEEEccCCcccccccCHHHHHHHHHH
Confidence 45777665444443333 45789999999999999888887652 211233333 44555778888899999
Q ss_pred Hhc-CCcceEecchHhhhcccccccccEEEe
Q 003268 382 IKH-GHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 382 l~~-g~~dIIIgT~~~L~~~l~~~~l~lVII 411 (835)
+.+ |.++|+|+| ..+...+++.++++||.
T Consensus 448 F~~~g~~~vLvaT-~~~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 448 FKTSKDNRLLIAT-SVADEGIDIVQCNLVVL 477 (556)
T ss_dssp ------CCEEEEE-C-----------CEEEE
T ss_pred hcccCceEEEEEc-CchhcCCCchhCCEEEE
Confidence 999 999999999 45666778888888886
No 212
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.33 E-value=0.47 Score=51.03 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC------CCEEEEEccc
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA------GKQAMVLAPT 340 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~------g~qvlVLvPt 340 (835)
.++.++.+ .-+.+.-++|+|++|+|||..++..+...... +..++++.-.
T Consensus 95 ~LD~~L~G--Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 95 ALDGLLAG--GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp HHHHHTTT--SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred hHHHhcCC--CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 35555531 11346778999999999999887776654443 5678877643
No 213
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.24 E-value=0.59 Score=53.00 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=54.5
Q ss_pred CCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEec--------CCCCHHHHHHHHHhH
Q 003268 313 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLS--------RFQSKAEKEEHLDMI 382 (835)
Q Consensus 313 GsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~--------g~~s~~e~~~~l~~l 382 (835)
.++|.......+.... ..+.+++|.++++.-+..+++.+... +...++++..++ |+.+..++...++.+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEEN-PALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHC-GGGTTCCEEECCC----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhC-cCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 4667655443333332 34589999999999999999988763 322234444444 477778888899999
Q ss_pred hc-CCcceEecchHhhhcccccccccEEEe
Q 003268 383 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 383 ~~-g~~dIIIgT~~~L~~~l~~~~l~lVII 411 (835)
.+ |.++|+|+| ..+...+++.++++||.
T Consensus 448 ~~~g~~~vLvaT-~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 448 RASGDNNILIAT-SVADEGIDIAECNLVIL 476 (555)
T ss_dssp ----CCSEEEEC-CCTTCCEETTSCSEEEE
T ss_pred hcCCCeeEEEEc-chhhcCCccccCCEEEE
Confidence 98 999999999 45666778888888876
No 214
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.08 E-value=0.4 Score=52.81 Aligned_cols=50 Identities=18% Similarity=0.073 Sum_probs=36.8
Q ss_pred HHHHHHH--hhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccH
Q 003268 289 AFLDVER--DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTI 341 (835)
Q Consensus 289 AI~~Il~--~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr 341 (835)
.++.++. ++ +.+.-++|.|++|+|||..++..+......+..|+++....
T Consensus 61 ~LD~~Lg~GGl---~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGI---PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSE---ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhCCCCc---cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4555553 33 34677899999999999998887777777777888876543
No 215
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.05 E-value=0.99 Score=50.79 Aligned_cols=43 Identities=23% Similarity=0.140 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEc--ccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA--PTIVLAK 345 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLv--Ptr~La~ 345 (835)
+..++++|+.|+|||+.+...+...... |++|+++. |.+..+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHH
Confidence 4578889999999999987666666666 88888765 4444333
No 216
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=89.04 E-value=0.23 Score=58.90 Aligned_cols=79 Identities=14% Similarity=0.261 Sum_probs=60.7
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHh--hcCCCCcEEEEecCC--------CCHHHHHHHHHhHhcCCcceEecchHhhhcc
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSER--FSKYPDIKVGLLSRF--------QSKAEKEEHLDMIKHGHLNIIVGTHSLLGSR 400 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~--f~~~~gi~V~~l~g~--------~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~ 400 (835)
+.+++|.++++..+..+++.+.+. +.. .|+++..++|. .+..++...++.+.+|..+|+|+|. .+...
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-~~~~G 477 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-VAEEG 477 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-SCCTT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-ccccC
Confidence 689999999999999999888753 222 26889999998 8999999999999999999999994 55566
Q ss_pred cccccccEEEe
Q 003268 401 VVYNNLGLLVV 411 (835)
Q Consensus 401 l~~~~l~lVII 411 (835)
+++.++++||.
T Consensus 478 IDip~v~~VI~ 488 (699)
T 4gl2_A 478 LDIKECNIVIR 488 (699)
T ss_dssp SCCCSCCCCEE
T ss_pred CccccCCEEEE
Confidence 78888888874
No 217
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.87 E-value=1.3 Score=53.13 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~ 322 (835)
|...+..+.+.+ ....+.++|++||+|+|||..+-.
T Consensus 191 r~~~i~~l~~~l-~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 191 REKELERAIQVL-CRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp CHHHHHHHHHHH-TSSSSCEEEEECCTTSSHHHHHHH
T ss_pred CHHHHHHHHHHH-hccCCCCeEEEcCCCCCHHHHHHH
Confidence 444555555444 234578899999999999987643
No 218
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.68 E-value=0.75 Score=49.19 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLv 338 (835)
+.+++++||+|+|||..+...+.... ..+..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 57899999999999987655554555 5676666543
No 219
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.40 E-value=0.9 Score=51.08 Aligned_cols=60 Identities=17% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh-CCCEEEEEcccHHHHHHHHHHHH
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS-AGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~-~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.++.++.++ +.+.-++|+|++|+|||..++..+..... .|..|+++...- -..|+..++.
T Consensus 189 ~LD~~lgGl---~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~ 249 (444)
T 2q6t_A 189 ELDQLIGTL---GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMM 249 (444)
T ss_dssp HHHHHHCCC---CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHH
T ss_pred hhhhhcCCc---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHH
Confidence 455565434 34567889999999999988877776665 477788876432 2335555543
No 220
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.06 E-value=0.39 Score=51.90 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=33.6
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhC--CCEEEEEcccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSA--GKQAMVLAPTIVLA 344 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~--g~qvlVLvPtr~La 344 (835)
+++ -++|.||.|+|||..++..+...... +..++++.....+.
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCC
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhh
Confidence 345 58899999999999988887776654 77899887665554
No 221
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=87.73 E-value=0.78 Score=48.28 Aligned_cols=75 Identities=9% Similarity=0.127 Sum_probs=59.9
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++.-+..+++.+. .+..+++..+..++...++.+.+|+.+|+|+|. .+...+++.++++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gid~~~~~~ 287 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-VASRGLDIPLVEK 287 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-HHHTTCCCCCBSE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-ccccCCCccCCCE
Confidence 346789999999987766444332 477889999999999999999999999999995 5666778888898
Q ss_pred EEecc
Q 003268 409 LVVDE 413 (835)
Q Consensus 409 VIIDE 413 (835)
||.-.
T Consensus 288 Vi~~~ 292 (337)
T 2z0m_A 288 VINFD 292 (337)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 88643
No 222
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.66 E-value=1.9 Score=51.33 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=68.5
Q ss_pred HHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcC-C-C-----------------------------CcEEEEecCCCCH
Q 003268 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSK-Y-P-----------------------------DIKVGLLSRFQSK 372 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~-~-~-----------------------------gi~V~~l~g~~s~ 372 (835)
+...+..+++++|.+|++.-+...+..+.+.+.. + . ...|..++++.+.
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 324 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSK 324 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCH
Confidence 3444567899999999999999999888765432 0 0 1248899999999
Q ss_pred HHHHHHHHhHhcCCcceEecchHhhhcccccccccEEEec
Q 003268 373 AEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 373 ~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIID 412 (835)
.++....+...+|..+|+|+|. .+...+++.++.+||-+
T Consensus 325 ~~r~~v~~~f~~g~~~vlvaT~-~l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 325 ALRDLIEEGFRQRKIKVIVATP-TLAAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHHHHHHHTTCSCEEEECG-GGGGSSCCCBSEEEECC
T ss_pred HHHHHHHHHHHcCCCeEEEECh-HHhcccCCCceEEEEeC
Confidence 9999999999999999999994 55556778888776543
No 223
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=87.62 E-value=0.95 Score=54.01 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=67.0
Q ss_pred HHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCC----------------------------CcEEEEecCCCCHHHHHH
Q 003268 326 CVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP----------------------------DIKVGLLSRFQSKAEKEE 377 (835)
Q Consensus 326 ~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~----------------------------gi~V~~l~g~~s~~e~~~ 377 (835)
..+..+++++|.+|++.-+...+..+.+.+..+. ...|+.++++.+..++..
T Consensus 232 ~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 311 (720)
T 2zj8_A 232 DAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVL 311 (720)
T ss_dssp HHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHH
Confidence 3456789999999999999998888876433210 123899999999999999
Q ss_pred HHHhHhcCCcceEecchHhhhcccccccccEEEeccc
Q 003268 378 HLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 378 ~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEa 414 (835)
..+.+.+|..+|+|+|. .+...+++.++.+| ||..
T Consensus 312 v~~~f~~g~~~vlvaT~-~l~~Gvdip~~~~V-I~~~ 346 (720)
T 2zj8_A 312 VEENFRKGIIKAVVATP-TLSAGINTPAFRVI-IRDI 346 (720)
T ss_dssp HHHHHHTTSSCEEEECS-TTGGGCCCCBSEEE-ECCS
T ss_pred HHHHHHCCCCeEEEECc-HhhccCCCCceEEE-EcCC
Confidence 99999999999999994 55556777777764 4433
No 224
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.62 E-value=0.31 Score=59.62 Aligned_cols=20 Identities=40% Similarity=0.443 Sum_probs=16.4
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
..++++||+|+|||.++-..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~l 608 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTL 608 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 37899999999999876433
No 225
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=87.27 E-value=1 Score=55.77 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=76.5
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCC--cceE
Q 003268 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGH--LNII 390 (835)
Q Consensus 313 GsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~--~dII 390 (835)
.+.|... +..++.. ..+.+++|.++++.-+..+.+.+...+ |+++..++|..+..++...+..+.+|+ ++|+
T Consensus 487 ~~~K~~~-L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~----g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vL 560 (968)
T 3dmq_A 487 FDPRVEW-LMGYLTS-HRSQKVLVICAKAATALQLEQVLRERE----GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVL 560 (968)
T ss_dssp TSHHHHH-HHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTT----CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEE
T ss_pred ccHHHHH-HHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEE
Confidence 4455443 3333333 457899999999998888877776432 688999999999999999999999998 9999
Q ss_pred ecchHhhhcccccccccEEEecccc
Q 003268 391 VGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 391 IgT~~~L~~~l~~~~l~lVIIDEaH 415 (835)
|+| ..+...+++.++++||+-+..
T Consensus 561 vaT-~v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 561 LCS-EIGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp ECS-CCTTCSSCCTTCCEEECSSCC
T ss_pred Eec-chhhcCCCcccCcEEEEecCC
Confidence 999 777778889999999987776
No 226
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.23 E-value=0.86 Score=55.10 Aligned_cols=81 Identities=6% Similarity=0.024 Sum_probs=65.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhc------CCCCcEEEEecCCCCHHHHHHHHHhHh-----cCCcceEecchHhhh
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFS------KYPDIKVGLLSRFQSKAEKEEHLDMIK-----HGHLNIIVGTHSLLG 398 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~------~~~gi~V~~l~g~~s~~e~~~~l~~l~-----~g~~dIIIgT~~~L~ 398 (835)
.++++||.+|++.-+.++++.+.+.+. ...++.|..+++..+..++...++... +|..+|||+|. .+.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~-iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN-IAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-HHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-HHH
Confidence 478999999999999999888875321 224789999999999999888888888 89999999995 445
Q ss_pred cccccccccEEEe
Q 003268 399 SRVVYNNLGLLVV 411 (835)
Q Consensus 399 ~~l~~~~l~lVII 411 (835)
..+.+.++.+||-
T Consensus 381 ~GidIp~v~~VId 393 (773)
T 2xau_A 381 TSLTIDGIVYVVD 393 (773)
T ss_dssp HTCCCTTEEEEEE
T ss_pred hCcCcCCeEEEEe
Confidence 5577788887764
No 227
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=87.11 E-value=1.4 Score=52.25 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=66.7
Q ss_pred HHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCC-------------------------CcEEEEecCCCCHHHHHHH
Q 003268 324 IFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYP-------------------------DIKVGLLSRFQSKAEKEEH 378 (835)
Q Consensus 324 ~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~-------------------------gi~V~~l~g~~s~~e~~~~ 378 (835)
+...+..+++++|.+|++.-+...+..+.+.+..+. +..|+.++++.+..++...
T Consensus 235 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 235 VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 344456789999999999999998888876432210 1247889999999999999
Q ss_pred HHhHhcCCcceEecchHhhhcccccccccEEEe
Q 003268 379 LDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 379 l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVII 411 (835)
.+...+|..+|+|+|. .+...+++.++.+||-
T Consensus 315 ~~~f~~g~~~vlvaT~-~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 315 EDAFRRGNIKVVVATP-TLAAGVNLPARRVIVR 346 (702)
T ss_dssp HHHHHTTSCCEEEECS-TTTSSSCCCBSEEEEC
T ss_pred HHHHHCCCCeEEEECc-HHhccCCCCceEEEEc
Confidence 9999999999999995 4445577777776554
No 228
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=86.76 E-value=1.3 Score=49.98 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=73.9
Q ss_pred CCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcC-CcceE
Q 003268 312 VGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHG-HLNII 390 (835)
Q Consensus 312 TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g-~~dII 390 (835)
..++|.......+......+.+++|.+.++..+..+.+.+...+ +..+..++|..+..++...++.+.+| .+.++
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vi 397 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFI 397 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCC
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEE
Confidence 35778766555555555678899999999998888888877643 46788899999999999999999888 56645
Q ss_pred ecchHhhhcccccccccEEEecccc
Q 003268 391 VGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 391 IgT~~~L~~~l~~~~l~lVIIDEaH 415 (835)
+.+...+...+++...+.||+=+..
T Consensus 398 l~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 398 VLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp EEECCCC-CCCCCTTCSEEEESSCC
T ss_pred EEecccccCCCchhhCCEEEEeCCC
Confidence 5444556666778888888875544
No 229
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.63 E-value=1.2 Score=47.53 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHh
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSER 354 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~ 354 (835)
.++.++.++ +.+.-++|+|++|+|||..++..+......+..++++.-. .-..|+..++...
T Consensus 57 ~LD~~lgGl---~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGY---KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSB---CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred HHHhhcCCC---CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 445555434 4466789999999999998888777777777788887644 3345555555543
No 230
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.41 E-value=0.48 Score=53.30 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=50.4
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.+|++.-+..+++.++.. ++++..++|. ++...+..+.+|+.+|+|+|. .+...+++. +++|
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~-v~e~GiDip-v~~V 244 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRK----TFEREYPTIKQKKPDFILATD-IAEMGANLC-VERV 244 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSS----SCC--------CCCSEEEESS-STTCCTTCC-CSEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecch----hHHHHHhhhcCCCceEEEECC-hhheeeccC-ceEE
Confidence 4789999999999999999988763 5789999993 455577888899999999994 445556677 7777
Q ss_pred Ee
Q 003268 410 VV 411 (835)
Q Consensus 410 II 411 (835)
|.
T Consensus 245 I~ 246 (440)
T 1yks_A 245 LD 246 (440)
T ss_dssp EE
T ss_pred Ee
Confidence 63
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.40 E-value=2.5 Score=47.37 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.1
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc--ccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA--PTIVLAK 345 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv--Ptr~La~ 345 (835)
+.-++++|+.|+|||+.+...+......+++++++. +.+..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR 142 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhH
Confidence 456778899999999987655554445577777664 4444443
No 232
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=86.37 E-value=3.5 Score=49.85 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=70.7
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcc--eE
Q 003268 313 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN--II 390 (835)
Q Consensus 313 GsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~d--II 390 (835)
.|||-......+......|.++||.+..+..+.-+...+... |+.+..++|..+..++...+..+.++... ++
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~ 628 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVF 628 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCE
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEE
Confidence 466755443333334456789999999998888777777653 68899999999999999999999886555 56
Q ss_pred ecchHhhhcccccccccEEEeccc
Q 003268 391 VGTHSLLGSRVVYNNLGLLVVDEE 414 (835)
Q Consensus 391 IgT~~~L~~~l~~~~l~lVIIDEa 414 (835)
+.+.......+++...+.||+=+.
T Consensus 629 LlSt~agg~GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 629 LLSTRAGGLGINLMTADTVVIFDS 652 (800)
T ss_dssp EEEHHHHTTTCCCTTCCEEEESSC
T ss_pred EEecccccCCCCccccceEEEecC
Confidence 666666776777777777766333
No 233
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.32 E-value=0.98 Score=44.26 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=58.9
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCCCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cC-ccCCCCCCcC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IV-ESGLDIQNAN 564 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----ii-e~GIDIp~v~ 564 (835)
.+.+++|++|++.-+..+++.+....++.++..++|+.+.......+. ...+|+|+|+ .+ ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 457899999999999999999999888889999999987544433332 2578999996 22 2346678888
Q ss_pred EEEEecCC
Q 003268 565 TIIVQDVQ 572 (835)
Q Consensus 565 ~VIi~d~p 572 (835)
+||+..++
T Consensus 147 ~iViDEah 154 (207)
T 2gxq_A 147 VAVLDEAD 154 (207)
T ss_dssp EEEEESHH
T ss_pred EEEEEChh
Confidence 88876654
No 234
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.26 E-value=0.56 Score=47.27 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.+.-++++|++|+|||..++..+......+..++++.-.. -..++.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 4667899999999999988777766666777788776432 2345444443
No 235
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.21 E-value=3 Score=44.57 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=25.1
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.-++++|++|+|||+.+...+......+++++++.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 456778999999999986544444344566776654
No 236
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=85.98 E-value=0.15 Score=57.68 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
+.+++|.||++.-+..+++.+... +..+..++|..+..++...++.+.+|..+|+|+|. .+...+++.++.+||
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-VCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-ccccCCccccCCEEE
Confidence 468999999999888888877653 67899999999999999999999999999999994 556667788888876
No 237
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=85.95 E-value=0.91 Score=54.90 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=47.6
Q ss_pred CCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCc--------EEEEecCCCCHHHHHHHHHh
Q 003268 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDI--------KVGLLSRFQSKAEKEEHLDM 381 (835)
Q Consensus 312 TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi--------~V~~l~g~~s~~e~~~~l~~ 381 (835)
..++|-......+.... ..+.+++|.++++..+..+++.+.. ...++++ .+..++++.+..++...++.
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~-~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~ 688 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEE-NPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHT-CSTTCSCCCEEC-----------------------
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHh-CcccccccceEEEecCCcccCCCCCHHHHHHHHHH
Confidence 35778765444433322 4568999999999999999888875 2222223 33444566778888899999
Q ss_pred Hhc-CCcceEecchHhhhcccccccccEEEe
Q 003268 382 IKH-GHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 382 l~~-g~~dIIIgT~~~L~~~l~~~~l~lVII 411 (835)
+.+ |.++|+|+| ..+...+++.++++||.
T Consensus 689 F~~~g~~~vLVaT-~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 689 FKTSKDNRLLIAT-SVADEGIDIVQCNLVVL 718 (797)
T ss_dssp -----CCSEEEEE-CC-------CCCSEEEE
T ss_pred hhccCCceEEEEc-CchhcCCCchhCCEEEE
Confidence 998 999999999 45666678888988886
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.76 E-value=1.4 Score=47.82 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.1
Q ss_pred HHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh------CCCEEEEEccc
Q 003268 290 FLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAPT 340 (835)
Q Consensus 290 I~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~------~g~qvlVLvPt 340 (835)
++.++.+ .-+.+.-++|+|++|+|||..++..+..+.. .+..++++.-.
T Consensus 111 LD~~LgG--Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGG--GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTS--SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred HHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 5555531 1244667899999999999988776665433 35678887644
No 239
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=84.86 E-value=1.1 Score=53.03 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=45.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecC--------CCCHHHHHHHHHhHhc-CCcceEecchHhhhcc
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSR--------FQSKAEKEEHLDMIKH-GHLNIIVGTHSLLGSR 400 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g--------~~s~~e~~~~l~~l~~-g~~dIIIgT~~~L~~~ 400 (835)
.+.+++|.++++.-+..+++.+.. .+.+.++++..++| +.+..++...++.+.+ |..+|+|+| ..+...
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~-~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT-~v~~~G 474 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEG-NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT-SVADEG 474 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHH-CTTCCSCCEEC-----------------------------CCSCSEEE-ESSCCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-CCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe-chhhcC
Confidence 467899999999999999998876 33333477777754 7777888889999998 999999999 455566
Q ss_pred cccccccEEEe
Q 003268 401 VVYNNLGLLVV 411 (835)
Q Consensus 401 l~~~~l~lVII 411 (835)
+++.++++||.
T Consensus 475 iDip~v~~VI~ 485 (696)
T 2ykg_A 475 IDIAQCNLVIL 485 (696)
T ss_dssp ---CCCSEEEE
T ss_pred CcCccCCEEEE
Confidence 78888888885
No 240
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=84.84 E-value=1.3 Score=52.80 Aligned_cols=70 Identities=9% Similarity=0.169 Sum_probs=56.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.+|++.-+..+++.++.. ++++..++|. ++...++.+.+|+.+|+|+|. .+...+++. +.+|
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTd-v~e~GIDip-v~~V 477 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTD-ISEMGANFG-ASRV 477 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS----SHHHHGGGGGTCCCSEEEECG-GGGTTCCCC-CSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH----HHHHHHHHHHCCCceEEEECc-hhhcceeeC-CcEE
Confidence 5789999999999999988888753 6889999983 566788889999999999994 455556666 6666
Q ss_pred E
Q 003268 410 V 410 (835)
Q Consensus 410 I 410 (835)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.07 E-value=3.2 Score=44.12 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.-++++|+.|+|||+.+...+......+++++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445778999999999987555544445677777654
No 242
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=83.88 E-value=0.71 Score=51.79 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=60.4
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccE
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGL 408 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~l 408 (835)
..+.+++|.++++..+..+++.+. +..+++..+..++...++.+.+|.++|+|+| ..+...+++.++++
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~----------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T-~~~~~Gldlp~~~~ 415 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFL----------IPAITHRTSREEREEILEGFRTGRFRAIVSS-QVLDEGIDVPDANV 415 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT----------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCS-SCCCSSSCSCCBSE
T ss_pred CCCCcEEEEECCHHHHHHHHHHhC----------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEc-CchhcCcccccCcE
Confidence 457899999999987776555431 4457788888899999999999999999999 77777888999998
Q ss_pred EEeccc
Q 003268 409 LVVDEE 414 (835)
Q Consensus 409 VIIDEa 414 (835)
||+=..
T Consensus 416 Vi~~~~ 421 (472)
T 2fwr_A 416 GVIMSG 421 (472)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887443
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.80 E-value=0.51 Score=47.68 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEcccHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
+.+.-++|+|++|+|||..++..+.... ..+..++++.-. .-..++.+++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHH
Confidence 3466789999999999998877666543 346667776533 22445555554
No 244
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=83.72 E-value=2 Score=42.56 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc------CccCCCCCC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI------VESGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~---p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i------ie~GIDIp~ 562 (835)
+.+++|++|+++-++.+++.++... ++..+..++|+.+...... .+..+..+|+|+|.- -...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 3589999999988888887777654 5789999999988655443 344567799999962 123467888
Q ss_pred cCEEEEecCCC
Q 003268 563 ANTIIVQDVQQ 573 (835)
Q Consensus 563 v~~VIi~d~p~ 573 (835)
+++||+..++.
T Consensus 159 ~~~lViDEah~ 169 (220)
T 1t6n_A 159 IKHFILDECDK 169 (220)
T ss_dssp CCEEEEESHHH
T ss_pred CCEEEEcCHHH
Confidence 88888866653
No 245
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=83.65 E-value=1.2 Score=55.03 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=49.6
Q ss_pred CCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEE--------EEecCCCCHHHHHHHHHhH
Q 003268 313 GFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKV--------GLLSRFQSKAEKEEHLDMI 382 (835)
Q Consensus 313 GsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V--------~~l~g~~s~~e~~~~l~~l 382 (835)
.++|.......+.... ..+.++||.++++..+..+.+.+... ..++++++ ..++|+.+..++...++.+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~-~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHC-STTSSCCCEEC------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhC-ccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 4677655433333322 34689999999999999999988763 22223343 3445667888889999999
Q ss_pred hc-CCcceEecchHhhhcccccccccEEEecc
Q 003268 383 KH-GHLNIIVGTHSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 383 ~~-g~~dIIIgT~~~L~~~l~~~~l~lVIIDE 413 (835)
.+ |.++|+|+|. .+...+++.++++||.=+
T Consensus 690 r~~g~~~VLVaT~-~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 690 KTSKDNRLLIATS-VADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp ----CCSEEEEEC-C------CCCCSEEEEES
T ss_pred hccCCeeEEEEeC-chhcCCcchhCCEEEEeC
Confidence 98 9999999994 555667888899988643
No 246
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.54 E-value=1.2 Score=47.55 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHH-hhhcCCCCCcEEEEccCCCccHHHHHHHHHHH
Q 003268 288 KAFLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCV 327 (835)
Q Consensus 288 ~AI~~Il~-~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~ 327 (835)
..++.++. ++ +.+.-++|+|++|+|||..++..+...
T Consensus 85 ~~LD~~l~GGl---~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 85 SELDSVLGGGL---ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHTTSSE---ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHHhcCCCc---cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555553 22 346678999999999999887766653
No 247
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=83.25 E-value=2 Score=48.00 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=53.7
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|++|++.-+..+++.+++. +.++..++|. ++...+..+.+|+.+|+|+|. .+...+++. ...|
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~-v~e~GiDip-~~~V 238 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK----TFESEYPKCKSEKWDFVITTD-ISEMGANFK-ADRV 238 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT----THHHHTTHHHHSCCSEEEECG-GGGTSCCCC-CSEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECc-hHHcCcccC-CcEE
Confidence 3668999999999999999888763 5789999985 456678888999999999995 444445554 4443
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.45 E-value=1.2 Score=48.88 Aligned_cols=52 Identities=25% Similarity=0.124 Sum_probs=37.0
Q ss_pred HHHHHHH--hhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHH
Q 003268 289 AFLDVER--DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVL 343 (835)
Q Consensus 289 AI~~Il~--~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~L 343 (835)
.++.++. ++ +.+.-++|.||+|+|||..++..+......+..++++.....+
T Consensus 48 ~LD~~Lg~GGi---~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 48 AIDIATGVGGY---PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHTSSSSE---ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHhccCCc---cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 4555553 22 3456788999999999998877776666677788888655433
No 249
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=82.29 E-value=0.26 Score=53.33 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEEE
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLV 410 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVI 410 (835)
+.+++|.++++.-+..+++.+.+. ++.+..+++..+..++...++.+.+|..+|+|+|. .+...+++.++++||
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-hhhcCCCcccCCEEE
Confidence 568999999999888887777653 67899999998888888899999999999999995 455566777777776
Q ss_pred e
Q 003268 411 V 411 (835)
Q Consensus 411 I 411 (835)
.
T Consensus 333 ~ 333 (394)
T 1fuu_A 333 N 333 (394)
T ss_dssp -
T ss_pred E
Confidence 4
No 250
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=81.86 E-value=6.1 Score=42.57 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=24.2
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
+.|.-+.++||+|+|||+..-..+......++.+++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 4567788999999999987533332223345556554
No 251
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=81.22 E-value=4.9 Score=39.98 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=53.3
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhC-CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC------cCccCCCCCCc
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAF-PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN------IVESGLDIQNA 563 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~-p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~------iie~GIDIp~v 563 (835)
.+.+++|++|+++-++.+++.+.... .+..+..++|+.+...+... +. ...+|+|+|+ +....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 56789999999998888888888753 57889999998765443332 22 3478999996 22345678889
Q ss_pred CEEEEecCC
Q 003268 564 NTIIVQDVQ 572 (835)
Q Consensus 564 ~~VIi~d~p 572 (835)
++||+..++
T Consensus 169 ~~lViDEah 177 (228)
T 3iuy_A 169 TYLVIDEAD 177 (228)
T ss_dssp CEEEECCHH
T ss_pred eEEEEECHH
Confidence 988876554
No 252
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.14 E-value=1.1 Score=46.83 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=17.1
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+..++++||+|+|||..+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 46789999999999998764
No 253
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=80.64 E-value=3.9 Score=48.62 Aligned_cols=76 Identities=8% Similarity=0.038 Sum_probs=62.0
Q ss_pred EEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhc--CCcceEecchHhhhcccccccccEEEec
Q 003268 335 MVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKH--GHLNIIVGTHSLLGSRVVYNNLGLLVVD 412 (835)
Q Consensus 335 lVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~--g~~dIIIgT~~~L~~~l~~~~l~lVIID 412 (835)
+|+++++.-+.++++.+.+. ++.|..++|..+..++..+.+.+.+ |..+|+|+|. .+...+++ ++.+||.-
T Consensus 324 iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-i~e~GlDi-~v~~VI~~ 396 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-AIGMGLNL-SIRRIIFY 396 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-GGGSSCCC-CBSEEEES
T ss_pred EEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-HHHCCcCc-CccEEEEC
Confidence 55588888788888877752 6789999999999999999999998 8899999995 45556778 89999987
Q ss_pred ccccc
Q 003268 413 EEQRF 417 (835)
Q Consensus 413 EaHr~ 417 (835)
...++
T Consensus 397 ~~~k~ 401 (677)
T 3rc3_A 397 SLIKP 401 (677)
T ss_dssp CSBC-
T ss_pred Ccccc
Confidence 77765
No 254
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.55 E-value=1.4 Score=49.21 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAK 345 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~ 345 (835)
..+++|+|+||||||...-..+...+..|..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3579999999999998753344455667888888889887753
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.46 E-value=1.2 Score=44.19 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=26.3
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+.-+++.|++|+|||..+...+......+..++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567889999999999876555544444456676654
No 256
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=80.22 E-value=0.33 Score=55.52 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.+.+. +..+..++++.+..++...++.+.+|+.+|+|+|. .+...+++.++++|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-~l~~GiDip~v~~V 429 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-VIARGIDVSQVNLV 429 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------CCCTTCCEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-hhhcCCCccCCCEE
Confidence 4678999999999888877777542 67889999988888888888889999999999995 66667888889998
Q ss_pred Eec
Q 003268 410 VVD 412 (835)
Q Consensus 410 IID 412 (835)
|..
T Consensus 430 I~~ 432 (508)
T 3fho_A 430 VNY 432 (508)
T ss_dssp EC-
T ss_pred EEE
Confidence 853
No 257
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.64 E-value=6.4 Score=41.62 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.-+.++|+.|+|||+.+...+......+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 456778899999999886554444444567777653
No 258
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=79.07 E-value=3.3 Score=46.46 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=55.0
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.+|++.-+.++++.+... ++.+..+++.. +...++.+.+|+.+|+|+|. .+...+++.+ .+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~-v~~~GiDip~-~~V 255 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTD-ISEMGANFRA-GRV 255 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTT----HHHHGGGGGSSCCSEEEECG-GGGSSCCCCC-SEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHH----HHHHHHhhccCCceEEEECC-HHHhCcCCCC-CEE
Confidence 4678999999999999988888753 67888888853 34577888999999999994 5555677777 666
Q ss_pred E
Q 003268 410 V 410 (835)
Q Consensus 410 I 410 (835)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.06 E-value=2.2 Score=47.71 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEE
Q 003268 282 PTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVL 337 (835)
Q Consensus 282 ~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVL 337 (835)
.++.+..++..++ . ..+.-++|+||||||||+.. .+++..+.. ...++++
T Consensus 151 ~~~~~~~~L~~l~----~-~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLI----K-RPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHH----T-SSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEE
T ss_pred CCHHHHHHHHHHH----H-hcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEe
Confidence 4566777776663 2 23456899999999999763 334444332 3445444
No 260
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=78.96 E-value=2.3 Score=47.96 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=43.2
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
.++.++.++ .++.-++|+|++|+|||..++..+......|..|+++.-. .-..|+..++..
T Consensus 186 ~LD~~lgGl---~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 186 ELDRMTYGY---KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp HHHHHHSSB---CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS-SCTTHHHHHHHH
T ss_pred HHHhhcCCC---CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC-CCHHHHHHHHHH
Confidence 466666544 3456789999999999999888888777778888888643 223355555543
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=78.65 E-value=1.6 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=17.9
Q ss_pred CCCcEEEEccCCCccHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~ 324 (835)
.+.-+.|+||+|||||+.+...+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999998764443
No 262
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.52 E-value=2.3 Score=43.06 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=56.0
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhC--CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCc-cCCCCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAF--PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQN 562 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~--p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie-~GIDIp~ 562 (835)
.+.+++|++|+++-++.+++.++... .+..+..++|+.+.......+.. ..+|+|+|+ .+. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 35689999999988887777666542 36789999999887665544432 478999996 222 3457888
Q ss_pred cCEEEEecCC
Q 003268 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+.+||+..++
T Consensus 177 ~~~lViDEah 186 (242)
T 3fe2_A 177 TTYLVLDEAD 186 (242)
T ss_dssp CCEEEETTHH
T ss_pred ccEEEEeCHH
Confidence 8888875554
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=78.29 E-value=1.7 Score=47.58 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
+.+.-++|.|+.|+|||..++..+......+..++++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3467789999999999999988887777777788887653
No 264
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.00 E-value=2.3 Score=42.78 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=56.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-----C-ccCCCCCC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-ESGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~---p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-----i-e~GIDIp~ 562 (835)
+.+++|++|+++-++.+++.++... ++.++..++|+.+..++...+ ...+|+|+|.- + ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 5689999999998888888887754 478899999998876554433 25789999972 1 23456777
Q ss_pred cCEEEEecCC
Q 003268 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+++||+..++
T Consensus 167 ~~~lViDEah 176 (230)
T 2oxc_A 167 IRLFILDEAD 176 (230)
T ss_dssp CCEEEESSHH
T ss_pred CCEEEeCCch
Confidence 8888775544
No 265
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=77.72 E-value=1.7 Score=47.31 Aligned_cols=49 Identities=27% Similarity=0.164 Sum_probs=36.3
Q ss_pred HHHHHHH--hhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 289 AFLDVER--DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 289 AI~~Il~--~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
.++.++. ++ +.+.-++|.|+.|+|||..++..+......+..++++.-.
T Consensus 48 ~LD~~Lg~GGl---~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGL---PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSE---ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhccCCc---cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4555554 33 3467789999999999999888877777777788887643
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.61 E-value=2.1 Score=45.49 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=26.6
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVLv 338 (835)
.+.-++++|++|+|||+.+...+.... ..|++|+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467788999999999998655444433 4677777654
No 267
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=77.26 E-value=2 Score=42.38 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=26.3
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.+.-+++.|++|+|||..+...+. ..+..++++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 4466789999999999988765554 3466777765
No 268
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.18 E-value=2.5 Score=55.83 Aligned_cols=51 Identities=18% Similarity=0.073 Sum_probs=39.6
Q ss_pred HHHHHH-hhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 290 FLDVER-DLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 290 I~~Il~-~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
++.++. + .-+++..++++||+|+|||..++..+..+...|.+++++...-.
T Consensus 1415 LD~lLG~G--Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAG--GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSS--SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHhcCCC--CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 555553 1 12457899999999999999998888888888889999886643
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=77.16 E-value=2.2 Score=41.21 Aligned_cols=36 Identities=28% Similarity=0.255 Sum_probs=24.7
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.++.++++|+.|||||+++-..+-..-..+..+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 467789999999999998754443333345556554
No 270
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=76.85 E-value=2.4 Score=43.53 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
..++++.++.|+|||..++..+......|..|+++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 35789999999999999988888877888777543
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=76.78 E-value=2.4 Score=55.33 Aligned_cols=47 Identities=21% Similarity=0.159 Sum_probs=40.7
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQH 347 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~ 347 (835)
+++.-+.|.||.|||||..++..+..+...|..++++.+..+|....
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH
Confidence 45677999999999999999999888888899999999987777664
No 272
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=76.28 E-value=2.1 Score=46.34 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.4
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.+..+|++||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 457899999999999987633
No 273
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.24 E-value=3.2 Score=51.97 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=62.8
Q ss_pred HHhcCCeEEEEecCccChHHHHHHHHhhCC--CC----cEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCcc
Q 003268 488 ELDRGGQVFYVLPRIKGLEEPMDFLQQAFP--GV----DIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES 556 (835)
Q Consensus 488 ~l~~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~----~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie~ 556 (835)
...++.+++|++|+++-+..+++.++...+ +. .+..+||+.+...+....+.+.+ .+|+|+|+ .+..
T Consensus 95 ~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~ 172 (1054)
T 1gku_B 95 LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE 172 (1054)
T ss_dssp HHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT
T ss_pred HhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH
Confidence 345678999999999988888888876653 45 78999999998888778887777 89999997 2222
Q ss_pred CCCCCCcCEEEEecCC
Q 003268 557 GLDIQNANTIIVQDVQ 572 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p 572 (835)
+.++++||+..++
T Consensus 173 ---L~~l~~lViDEah 185 (1054)
T 1gku_B 173 ---LGHFDFIFVDDVD 185 (1054)
T ss_dssp ---SCCCSEEEESCHH
T ss_pred ---hccCCEEEEeChh
Confidence 5578888876554
No 274
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=76.11 E-value=4.3 Score=47.71 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=55.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.++++.-+..+++.+... ++++..+++. ++.+.++.+.+|+.+|+|+|. .+...+++. +.+|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTd-v~~rGiDi~-v~~V 422 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTD-ISEMGANFR-AGRV 422 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT----THHHHTTHHHHSCCSEEEECG-GGGTTCCCC-CSEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH----HHHHHHHhhcCCCcEEEEECc-HHHcCcccC-ceEE
Confidence 4678999999999999999988864 6789999983 566678888999999999995 455556664 6666
Q ss_pred E
Q 003268 410 V 410 (835)
Q Consensus 410 I 410 (835)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 275
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=75.86 E-value=2.8 Score=43.64 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.7
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..+.-++++||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 44667899999999999864
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=75.48 E-value=1.2 Score=41.92 Aligned_cols=20 Identities=40% Similarity=0.306 Sum_probs=16.3
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
|-++++|++|||||+++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46889999999999986433
No 277
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=75.21 E-value=3.3 Score=44.93 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=37.5
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
.+.-++|.|++|+|||..++..+......+..|+|+...- -..|+..++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHH
Confidence 3556888999999999998887777766788898886532 24455555544
No 278
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.10 E-value=4.5 Score=39.43 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=55.0
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCc-cCCCCCC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE-SGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~---p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie-~GIDIp~ 562 (835)
+.+++|++|++.-++.+++.+.... ++..+..++|+.+....... + .+..+|+|+|+ .+. ..+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 4689999999988888888777654 46789999999876543222 2 34678999997 222 2356778
Q ss_pred cCEEEEecCC
Q 003268 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+++||+..++
T Consensus 147 ~~~lViDEah 156 (206)
T 1vec_A 147 VQMIVLDEAD 156 (206)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEEChH
Confidence 8888876554
No 279
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.07 E-value=2.9 Score=50.63 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=17.1
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..++.+|+.||.|+|||+.+
T Consensus 236 ~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34678999999999999875
No 280
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.01 E-value=2.6 Score=46.27 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=30.4
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
+.+.+|+|+||+|||...-..+......+.+++++=|..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4679999999999998765555555566778888877654
No 281
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.69 E-value=2.2 Score=47.50 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh------CCCEEEEEcc
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLAP 339 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~------~g~qvlVLvP 339 (835)
.++.++.+ .-+.+.-++|+|+.|+|||..+...+..... .+..++++.-
T Consensus 166 ~LD~lLgG--GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 166 NLDTLLGG--GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp HHHHHTTT--SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred hHHHHhcC--CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 45555521 1234677899999999999887654444332 2456777653
No 282
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.38 E-value=1.5 Score=47.61 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
+.-++|+||||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 346889999999999876443
No 283
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.32 E-value=4 Score=45.94 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.6
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..++.+|+.||+|+|||..+-
T Consensus 213 ~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 446789999999999998753
No 284
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=74.07 E-value=1.6 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCccHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~ 324 (835)
+.-++|+||||||||..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3457789999999998765443
No 285
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=73.93 E-value=1.4 Score=42.08 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCccHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~ 322 (835)
++-++++|++|||||+++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999988633
No 286
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.89 E-value=3.4 Score=46.45 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=17.7
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
+.++.+|+.||+|+|||..+-
T Consensus 213 ~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHH
Confidence 456889999999999998753
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.44 E-value=2 Score=45.34 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.++-++++|+.|||||+++-
T Consensus 32 ~~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999998764
No 288
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=73.25 E-value=2.1 Score=42.86 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=19.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
+|-.+++|+.|||||..++..+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 477899999999999987654444
No 289
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=73.02 E-value=3.2 Score=41.95 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=50.3
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCcc-CCCCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES-GLDIQN 562 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie~-GIDIp~ 562 (835)
.+.+++|++|+++-+..+++.++.... +..+..++|+.... .....+..+..+|+|+|+ .+.. .+++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999988888888887653 56788888886533 233445567789999994 3333 466778
Q ss_pred cCEEEEecCC
Q 003268 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+.+||+..++
T Consensus 174 ~~~lViDEah 183 (237)
T 3bor_A 174 IKMFVLDEAD 183 (237)
T ss_dssp CCEEEEESHH
T ss_pred CcEEEECCch
Confidence 8888876554
No 290
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=72.95 E-value=4.9 Score=40.27 Aligned_cols=77 Identities=14% Similarity=0.287 Sum_probs=53.7
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-----Ccc--CCCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VES--GLDIQ 561 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-----ie~--GIDIp 561 (835)
.+.+++|++|+++-+..+++.++.... +..+..++|+.+.......+ +..+|+|+|.- +.. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 467899999999998888888887653 47889999987654433322 46789999961 222 36677
Q ss_pred CcCEEEEecCC
Q 003268 562 NANTIIVQDVQ 572 (835)
Q Consensus 562 ~v~~VIi~d~p 572 (835)
++++||+..++
T Consensus 171 ~~~~lViDEah 181 (236)
T 2pl3_A 171 DLQMLVLDEAD 181 (236)
T ss_dssp TCCEEEETTHH
T ss_pred cccEEEEeChH
Confidence 78888775544
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=72.85 E-value=1.9 Score=41.45 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCccHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~ 324 (835)
++.++++|++|||||+++-..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999875444
No 292
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.60 E-value=17 Score=36.84 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=55.7
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCc--cCCCCCC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE--SGLDIQN 562 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie--~GIDIp~ 562 (835)
+.+++|++|+++-+..+++.++.... +..+..++|+.+...+...+ .+..+|+|+|+ .+. .++++.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 45799999999888888877766532 67899999998865544333 24689999996 222 4577888
Q ss_pred cCEEEEecCC
Q 003268 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+++||+..++
T Consensus 187 ~~~lViDEah 196 (249)
T 3ber_A 187 LKYLVMDEAD 196 (249)
T ss_dssp CCEEEECSHH
T ss_pred cCEEEEcChh
Confidence 8888876554
No 293
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=72.11 E-value=1.9 Score=48.54 Aligned_cols=70 Identities=10% Similarity=0.154 Sum_probs=52.3
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.+|++.-+..+++.+... ++.+..+++. ++...+..+.+|..+|+|+|. .+...+++.+ .+|
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~-v~~~GiDip~-~~V 257 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTD-ISEMGANFGA-SRV 257 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTT----CCCCCGGGSSSCCCSEEEESS-CC---CCCSC-SEE
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHH----HHHHHHhhccCCCceEEEECC-hHHhCeecCC-CEE
Confidence 3678999999999999999888763 6788999884 344466777889999999994 4555566766 555
Q ss_pred E
Q 003268 410 V 410 (835)
Q Consensus 410 I 410 (835)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=71.56 E-value=3.4 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV 328 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~ 328 (835)
+..++|+||||||||+.. .++...+
T Consensus 260 g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 567999999999999753 3444333
No 295
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.30 E-value=5.1 Score=44.91 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=17.5
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..++.+|+.||+|+|||..+-
T Consensus 204 ~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 446789999999999998753
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.27 E-value=4.5 Score=38.70 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=23.5
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
-++++|+.|||||+++-..+-..-..|..+.++ |+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECCh
Confidence 578999999999998744433322334445555 5433
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=71.16 E-value=2.3 Score=41.81 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCccHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~ 324 (835)
++.++++|++|||||+++-..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 5678999999999999864443
No 298
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.90 E-value=14 Score=37.86 Aligned_cols=78 Identities=14% Similarity=0.292 Sum_probs=56.9
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCc--cCCCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVE--SGLDIQ 561 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie--~GIDIp 561 (835)
.+.+++|++|+++-++.+++.++.... +..+..++|+......... +..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999999999888888653 5678889998876544333 3333 88999995 222 247788
Q ss_pred CcCEEEEecCC
Q 003268 562 NANTIIVQDVQ 572 (835)
Q Consensus 562 ~v~~VIi~d~p 572 (835)
++.+||+..++
T Consensus 201 ~l~~lViDEah 211 (262)
T 3ly5_A 201 NLQCLVIDEAD 211 (262)
T ss_dssp TCCEEEECSHH
T ss_pred cCCEEEEcChH
Confidence 89888875554
No 299
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.82 E-value=2.3 Score=45.23 Aligned_cols=33 Identities=21% Similarity=0.067 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val 321 (835)
|..++..+...+.. +.++++.||+|+|||..+-
T Consensus 32 ~~~~~~~l~~~l~~---~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 32 QKYMINRLLIGICT---GGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CHHHHHHHHHHHHH---TCCEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHc---CCeEEEECCCCCcHHHHHH
Confidence 44455555544433 4689999999999997653
No 300
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=70.81 E-value=2.1 Score=44.09 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.2
Q ss_pred CCCCCcEEEEccCCCccHHHHHH
Q 003268 300 RETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 300 ~~~~~d~LI~g~TGsGKT~val~ 322 (835)
...++.++++|+.|||||+++-.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHH
Confidence 34467789999999999987643
No 301
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=70.63 E-value=3.1 Score=43.87 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=17.6
Q ss_pred CCCCcEEEEccCCCccHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~ 322 (835)
..+..+|++||+|+|||..+-.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3467789999999999987543
No 302
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=70.60 E-value=4.8 Score=40.86 Aligned_cols=78 Identities=9% Similarity=0.061 Sum_probs=55.2
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc------CccCCCCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI------VESGLDIQN 562 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i------ie~GIDIp~ 562 (835)
.+.+++|++|+++-+..+++.++.... +..+..++|+.+.......+ ....+|+|+|+- -...+++.+
T Consensus 99 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 174 (253)
T 1wrb_A 99 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEF 174 (253)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhh
Confidence 346899999999988888887776532 56788899988654433222 346789999972 123467788
Q ss_pred cCEEEEecCC
Q 003268 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+++||+..++
T Consensus 175 ~~~lViDEah 184 (253)
T 1wrb_A 175 CKYIVLDEAD 184 (253)
T ss_dssp CCEEEEETHH
T ss_pred CCEEEEeCHH
Confidence 8888876655
No 303
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=70.56 E-value=3.6 Score=44.21 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+.-++++|+.|+|||+.+...+......+++++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456788999999999986544444445577777663
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=70.21 E-value=2.3 Score=42.89 Aligned_cols=21 Identities=48% Similarity=0.703 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++-++++||||+|||..++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 466899999999999876443
No 305
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=70.05 E-value=3.7 Score=44.62 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.+..++++||+|+|||.++-.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 356799999999999987643
No 306
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=69.98 E-value=4.2 Score=42.53 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEc
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLA 338 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLv 338 (835)
+++.+.-++ +.+.-++|+|++|+|||..+...+...... |..++++.
T Consensus 24 ~Ld~i~~~l---~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 24 GINDKTLGA---RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp THHHHHCSB---CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHhcCC---CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 345554333 446678899999999998876555444433 65677664
No 307
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=69.73 E-value=12 Score=43.12 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=61.7
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcC---CCCcEEEEecCCCCHHHHHHHHHhHhcCCc--ceEecchHhhhccccc
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSK---YPDIKVGLLSRFQSKAEKEEHLDMIKHGHL--NIIVGTHSLLGSRVVY 403 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~---~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~--dIIIgT~~~L~~~l~~ 403 (835)
..+.+++|.++++.-|..+++.+.+.+.. ..+-.+..++|..+ .++...++.+.+|+. .+|+.|..++...+++
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 34689999999999999999988764321 11223677777643 357788899998764 4455555677777889
Q ss_pred ccccEEEecccc
Q 003268 404 NNLGLLVVDEEQ 415 (835)
Q Consensus 404 ~~l~lVIIDEaH 415 (835)
.++.+||++..-
T Consensus 516 p~v~~Vi~~~~~ 527 (590)
T 3h1t_A 516 PTCKNVVLARVV 527 (590)
T ss_dssp TTEEEEEEESCC
T ss_pred hheeEEEEEecC
Confidence 999999987653
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=69.65 E-value=2.6 Score=42.06 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.7
Q ss_pred CCCcEEEEccCCCccHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~ 324 (835)
+++.++++|+.|||||+++-..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999874433
No 309
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.58 E-value=2.7 Score=40.80 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=18.0
Q ss_pred CCCCcEEEEccCCCccHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~ 322 (835)
..++.++++|++|||||.++-.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3467899999999999998643
No 310
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.57 E-value=3.5 Score=46.63 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
|...+..+...+. .....++|++||+|+|||.++-..
T Consensus 185 r~~~i~~l~~~l~-r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 185 RSKEIQRVIEVLS-RRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp CHHHHHHHHHHHH-CSSSCEEEEESCTTTTTHHHHHHH
T ss_pred cHHHHHHHHHHHh-ccCCCCeEEECCCCCCHHHHHHHH
Confidence 4444444444342 345678999999999999876433
No 311
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=69.53 E-value=20 Score=42.02 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=69.2
Q ss_pred CCCccHHHHHHHHHHHH--hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcc-
Q 003268 312 VGFGKTEVALRAIFCVV--SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLN- 388 (835)
Q Consensus 312 TGsGKT~val~a~~~~~--~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~d- 388 (835)
.-|||-.+. ..++..+ ..+.+++|.+..+..+..+...+... |+.+..++|..+..++...++...+|...
T Consensus 396 ~~s~K~~~l-~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 469 (644)
T 1z3i_X 396 QLSGKMLVL-DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGTMSIKKRAKIVERFNNPSSPE 469 (644)
T ss_dssp GGSHHHHHH-HHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH-----TCCEEEECSSCCHHHHHHHHHHHHSTTCCC
T ss_pred ccChHHHHH-HHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC-----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCc
Confidence 347886543 2333332 34789999999998887777766653 67899999999999999999999988654
Q ss_pred -eEecchHhhhcccccccccEEEecccc
Q 003268 389 -IIVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 389 -IIIgT~~~L~~~l~~~~l~lVIIDEaH 415 (835)
+++.+.......+++...+.||+=+.+
T Consensus 470 ~v~L~st~a~g~Glnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 470 FIFMLSSKAGGCGLNLIGANRLVMFDPD 497 (644)
T ss_dssp CEEEEEGGGSCTTCCCTTEEEEEECSCC
T ss_pred EEEEEecccccCCcccccCCEEEEECCC
Confidence 444444556666777777777764433
No 312
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=69.52 E-value=2.4 Score=42.61 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=17.6
Q ss_pred CCCcEEEEccCCCccHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a 323 (835)
+++.++++|++|||||+++-..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999986433
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=69.44 E-value=2 Score=41.20 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.7
Q ss_pred CCcEEEEccCCCccHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~ 324 (835)
++-++++|+.|||||+++-..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999999864433
No 314
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=69.44 E-value=3.4 Score=41.30 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHh------CCCEEEEEc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVS------AGKQAMVLA 338 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~------~g~qvlVLv 338 (835)
+.+.-++|.||+|+|||..+...+..... .+..++++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 34677899999999999987665554332 145566664
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.16 E-value=4.1 Score=42.01 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=23.0
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
++-++++|+.|||||.++-..+-.....|..++++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 467899999999999986443332222355554443
No 316
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=69.10 E-value=2.8 Score=41.63 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+.-++++||+|+|||+++-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45678899999999998753
No 317
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=69.07 E-value=3.5 Score=41.37 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHH-hCCCEEEEE
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVV-SAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~-~~g~qvlVL 337 (835)
.+.-+.|.||.|||||+.+...+...+ ..+..++++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 467789999999999987644432222 334444444
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=68.59 E-value=2.4 Score=43.75 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.4
Q ss_pred cEEEEccCCCccHHHHH
Q 003268 305 DRLICGDVGFGKTEVAL 321 (835)
Q Consensus 305 d~LI~g~TGsGKT~val 321 (835)
-++|+|++|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999998764
No 319
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=68.44 E-value=15 Score=40.31 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=16.8
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
+...+++++|++|+|||.++
T Consensus 158 ~~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVA 177 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEecCCCcCHHHHH
Confidence 34578999999999999865
No 320
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=68.43 E-value=4.9 Score=42.79 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+.-+.++||+|||||+..-..+......++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4567888999999999875333322223455666553
No 321
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=68.40 E-value=5.2 Score=43.73 Aligned_cols=20 Identities=40% Similarity=0.473 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
....+++.|++|+||+.++-
T Consensus 151 ~~~~vli~GesGtGKe~lAr 170 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVAR 170 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHH
T ss_pred cchhheEEeCCCchHHHHHH
Confidence 35679999999999997753
No 322
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=68.34 E-value=3.1 Score=40.78 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=19.4
Q ss_pred CCCCCcEEEEccCCCccHHHHHHH
Q 003268 300 RETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 300 ~~~~~d~LI~g~TGsGKT~val~a 323 (835)
...+|.++++|+.|||||+++-..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHH
Confidence 345788999999999999986443
No 323
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=68.28 E-value=2.6 Score=42.30 Aligned_cols=23 Identities=30% Similarity=0.173 Sum_probs=18.5
Q ss_pred CcEEEEccCCCccHHHHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~ 326 (835)
|.+++.||+||||++++-..+-.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999987655443
No 324
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=68.28 E-value=3.2 Score=46.58 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+..++++|++|+|||..+...+......|.+++++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457889999999999987665555555577787765
No 325
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.27 E-value=3.9 Score=44.89 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.+..++|+||||||||+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999864
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=68.19 E-value=2.1 Score=41.33 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.3
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.++-++++|+.|||||+++-.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356789999999999998643
No 327
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=68.17 E-value=3.6 Score=40.78 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=49.8
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc------CccCCCCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI------VESGLDIQN 562 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i------ie~GIDIp~ 562 (835)
.+.+++|++|++.-++.+++.+....+ +..+..++|+.+....... +. ..+|+|+|.- ....+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346899999999988888888877643 6788899998765443322 22 3789999962 234566777
Q ss_pred cCEEEEecCC
Q 003268 563 ANTIIVQDVQ 572 (835)
Q Consensus 563 v~~VIi~d~p 572 (835)
+.+||+..++
T Consensus 156 ~~~iViDEah 165 (224)
T 1qde_A 156 IKMFILDEAD 165 (224)
T ss_dssp CCEEEEETHH
T ss_pred CcEEEEcChh
Confidence 8888876554
No 328
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=68.11 E-value=4.8 Score=38.51 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.++-++++|+.|||||+++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46778999999999998753
No 329
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=67.82 E-value=3.9 Score=41.28 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=53.5
Q ss_pred cCCeEEEEecCccChHHHHHHHHhhCC--CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCcc---CCCC
Q 003268 491 RGGQVFYVLPRIKGLEEPMDFLQQAFP--GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES---GLDI 560 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~l~~~L~~~~p--~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie~---GIDI 560 (835)
.+.+++|++|+++-+..+++.+..... +..+..++|+.... ........+..+|+|+|+ .+.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 355899999999999898888887654 56677777653221 112223356789999995 2222 4788
Q ss_pred CCcCEEEEecCC
Q 003268 561 QNANTIIVQDVQ 572 (835)
Q Consensus 561 p~v~~VIi~d~p 572 (835)
.++.+||+..++
T Consensus 174 ~~~~~lViDEah 185 (245)
T 3dkp_A 174 ASVEWLVVDESD 185 (245)
T ss_dssp TTCCEEEESSHH
T ss_pred ccCcEEEEeChH
Confidence 889988876554
No 330
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=67.82 E-value=10 Score=47.09 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=62.5
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcC-------------------CC----------------CcEEEEecCCCCHHH
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSK-------------------YP----------------DIKVGLLSRFQSKAE 374 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~-------------------~~----------------gi~V~~l~g~~s~~e 374 (835)
.+.+++|.++++.-+.+.+..+.. .+- +. ...|+.++|+.+..+
T Consensus 342 ~~~~~IVF~~sr~~~e~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~e 420 (1010)
T 2xgj_A 342 KYNPVIVFSFSKRDCEELALKMSK-LDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420 (1010)
T ss_dssp TCCSEEEEESSHHHHHHHHHTTTT-SCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHH
Confidence 345899999999988887776643 110 00 012889999999999
Q ss_pred HHHHHHhHhcCCcceEecchHhhhcccccccccEEEecccccc
Q 003268 375 KEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQRF 417 (835)
Q Consensus 375 ~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaHr~ 417 (835)
+......+.+|.++|+|+|. .+...+++.+..+ ||+-..+|
T Consensus 421 R~~ve~~F~~G~ikVLVAT~-~la~GIDiP~~~v-VI~~~~kf 461 (1010)
T 2xgj_A 421 KEVIEILFQEGFLKVLFATE-TFSIGLNMPAKTV-VFTSVRKW 461 (1010)
T ss_dssp HHHHHHHHHTTCCSEEEEEG-GGGGSTTCCBSEE-EESCSEEE
T ss_pred HHHHHHHHhcCCCcEEEEeh-HhhccCCCCCceE-EEeCCccc
Confidence 99999999999999999994 5556677777776 55544443
No 331
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=67.65 E-value=3.1 Score=40.27 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+.-++|+||+|||||+.+
T Consensus 5 g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456889999999999875
No 332
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=67.64 E-value=2.2 Score=41.16 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=16.8
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..+.-++++|+.|||||+.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667899999999999875
No 333
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.39 E-value=5.4 Score=44.77 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.4
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.+..+|++||+|+|||..+-.
T Consensus 62 ~~~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHH
Confidence 357899999999999987643
No 334
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=67.37 E-value=3.6 Score=51.92 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=40.3
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhC---CCEEEEEcccHHHHHHHHHHHHHhhcCC--CCcEEEEecC
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSA---GKQAMVLAPTIVLAKQHFDVVSERFSKY--PDIKVGLLSR 368 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~---g~qvlVLvPtr~La~Q~~~~~~~~f~~~--~gi~V~~l~g 368 (835)
.||.|..|||||.+.+.-+...+.. +.+++++||... .-++.+++...++.. .++.|..+++
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l~~~~~~~~~V~TFhs 70 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTPDMGGMIRAQVFSFSR 70 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCSSCSEESSEEEECHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhhhhcceeeeEEecHHH
Confidence 4788999999999987666554433 478999999863 444555555444321 2355655554
No 335
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=67.34 E-value=3.1 Score=47.68 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+.++|++||+|+|||..+
T Consensus 41 ~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCEEEEECCSSSSHHHHH
T ss_pred CCeeEeecCchHHHHHHH
Confidence 468999999999999765
No 336
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.32 E-value=2.6 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.234 Sum_probs=16.3
Q ss_pred CcEEEEccCCCccHHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~ 324 (835)
.-++|+||||||||..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHH
Confidence 347889999999998765443
No 337
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.89 E-value=2.9 Score=41.35 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.5
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
|.++|+|+.|||||+++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999987443
No 338
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=66.77 E-value=2.6 Score=45.51 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.1
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
+.++|+||||||||..+...
T Consensus 6 ~~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36889999999999876443
No 339
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=66.60 E-value=3.6 Score=46.80 Aligned_cols=60 Identities=8% Similarity=-0.024 Sum_probs=41.1
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhC-CCEEEEEcccHHHHHHHHHHHH
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSA-GKQAMVLAPTIVLAKQHFDVVS 352 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~-g~qvlVLvPtr~La~Q~~~~~~ 352 (835)
.++.++.++ ..+.-++|.|++|+|||..++..+...... |..|+++.-.- -..|+..++.
T Consensus 231 ~LD~~lgGl---~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~-s~~~l~~r~~ 291 (503)
T 1q57_A 231 GINDKTLGA---RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE-SVEETAEDLI 291 (503)
T ss_dssp THHHHHCCC---CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS-CHHHHHHHHH
T ss_pred hhhHhhccc---CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC-CHHHHHHHHH
Confidence 345555433 446678899999999999988888777665 77788876432 2345555553
No 340
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.51 E-value=3.3 Score=43.18 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998753
No 341
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=66.50 E-value=2.8 Score=39.72 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=15.7
Q ss_pred CcEEEEccCCCccHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~ 322 (835)
+-++++|+.|||||+++-.
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 4578999999999998643
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=66.43 E-value=3 Score=41.31 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.5
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
|.++|+|+.|||||+++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999987443
No 343
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.25 E-value=2.7 Score=41.33 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=17.0
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
..+.-++|+|+.|||||+++-
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 446788999999999998763
No 344
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=66.09 E-value=6.1 Score=38.63 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=18.6
Q ss_pred CCCcEEEEccCCCccHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~ 324 (835)
+++-++++|+.|||||+++-..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999864433
No 345
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=65.96 E-value=2.6 Score=40.47 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++.++++|+.|||||+++-..
T Consensus 4 g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999986443
No 346
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=65.95 E-value=5.7 Score=38.92 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.9
Q ss_pred CCCCcEEEEccCCCccHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~ 322 (835)
+.+.-+.++|+.|||||+++-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4467788999999999998643
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=65.88 E-value=2.6 Score=39.78 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.3
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
|.++++|+.|||||+++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999986433
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.76 E-value=5.7 Score=38.66 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=21.6
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
-+.++|+.|||||......+-.....|.++.++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999875443322224455555544
No 349
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=65.74 E-value=3.6 Score=40.05 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.++-+.++|++|||||+++
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999875
No 350
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=65.69 E-value=3.6 Score=40.49 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.++-++++|++|||||+++-
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 36789999999999998753
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=65.60 E-value=3.4 Score=41.16 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=18.7
Q ss_pred CCCcEEEEccCCCccHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~ 324 (835)
.++.++++|+.|||||+++-..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999874443
No 352
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.32 E-value=3.6 Score=41.96 Aligned_cols=19 Identities=42% Similarity=0.543 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998753
No 353
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=65.21 E-value=4.5 Score=48.54 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a 323 (835)
|...+..+...+ ....+.++|++||+|+|||.++-..
T Consensus 185 ~~~~i~~l~~~l-~~~~~~~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 185 RSKEIQRVIEVL-SRRTKNNPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp CHHHHHHHHHHH-HCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred chHHHHHHHHHH-hCCCCCCeEEECCCCCCHHHHHHHH
Confidence 445555555444 2355678999999999999886433
No 354
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=65.09 E-value=3.7 Score=39.31 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
+..++++|++|||||.++-..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHH
Confidence 457999999999999986443
No 355
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=64.97 E-value=3.6 Score=38.95 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
++.++|+|+.|||||+++-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999998753
No 356
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=64.63 E-value=5.6 Score=42.30 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.|.-+.++|++|+|||+..-..+......++++++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3556789999999999975333222223456666654
No 357
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=64.62 E-value=4.6 Score=39.94 Aligned_cols=22 Identities=18% Similarity=0.287 Sum_probs=17.9
Q ss_pred CCCCcEEEEccCCCccHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~ 322 (835)
..++-++++|+.|||||+++-.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4467889999999999998643
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=64.56 E-value=6.3 Score=37.72 Aligned_cols=33 Identities=24% Similarity=0.084 Sum_probs=20.5
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEE
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlV 336 (835)
|-++++|+.|||||+++-..+-..-..|..++.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 347899999999999864433322223544443
No 359
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=64.55 E-value=5.2 Score=43.68 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+..++|+||||||||+..
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 347899999999999764
No 360
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=64.43 E-value=3.6 Score=38.70 Aligned_cols=18 Identities=22% Similarity=0.060 Sum_probs=15.3
Q ss_pred cEEEEccCCCccHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALR 322 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~ 322 (835)
-++++|+.|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998644
No 361
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=64.41 E-value=8 Score=48.61 Aligned_cols=81 Identities=11% Similarity=0.031 Sum_probs=59.2
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHh-hcCC---------------------------------CCcEEEEecCCCCHHHH
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSER-FSKY---------------------------------PDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~-f~~~---------------------------------~gi~V~~l~g~~s~~e~ 375 (835)
.+.+++|.++++.-+.+.+..+... +... ....|+.++++.+..++
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 3568999999999888877766431 0000 00118999999999999
Q ss_pred HHHHHhHhcCCcceEecchHhhhcccccccccEEEe
Q 003268 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVV 411 (835)
Q Consensus 376 ~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVII 411 (835)
...+..+.+|.++|+|+|. .+...+++.++.+||-
T Consensus 520 ~~v~~~F~~G~ikVLVAT~-vla~GIDiP~v~~VI~ 554 (1108)
T 3l9o_A 520 EVIEILFQEGFLKVLFATE-TFSIGLNMPAKTVVFT 554 (1108)
T ss_dssp HHHHHHHHHTCCCEEEEES-CCCSCCCC--CEEEES
T ss_pred HHHHHHHhCCCCeEEEECc-HHhcCCCCCCceEEEe
Confidence 9999999999999999995 4555677888888663
No 362
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.33 E-value=7.2 Score=43.70 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=17.6
Q ss_pred CCCCcEEEEccCCCccHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val 321 (835)
+.++.+|+.||.|+|||..+-
T Consensus 214 ~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHH
Confidence 446789999999999998653
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=64.26 E-value=3.1 Score=40.51 Aligned_cols=21 Identities=19% Similarity=0.018 Sum_probs=17.7
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
+++-++++|+.|||||+++-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 367899999999999998643
No 364
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=64.04 E-value=11 Score=36.96 Aligned_cols=36 Identities=22% Similarity=0.075 Sum_probs=21.8
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.+.-+.|+|+.|||||+.+-..+-..-..+..+.++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 355678899999999987533222211234455443
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=63.76 E-value=3.4 Score=39.64 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCccHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~ 322 (835)
++-++++|+.|||||+++-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999998744
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=63.47 E-value=2.6 Score=40.33 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=13.1
Q ss_pred CCcEEEEccCCCccHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~ 322 (835)
++-++++|+.|||||+++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 57789999999999998644
No 367
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=63.40 E-value=6.2 Score=39.94 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH
Q 003268 287 KKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 287 ~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val 321 (835)
..++..++++ -++...+|+.||.|+|||..+.
T Consensus 45 ~~~l~~~~~~---iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 45 LGALKSFLKG---TPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHHT---CTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhc---CCcccEEEEECCCCCCHHHHHH
Confidence 3444444442 2334568999999999998763
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=63.35 E-value=4 Score=39.34 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++-++++|+.|||||+++-..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 567899999999999986443
No 369
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=63.27 E-value=11 Score=37.01 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.2
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
+.+.-+.|.|++|||||+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34567788999999999865
No 370
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=63.17 E-value=15 Score=45.63 Aligned_cols=82 Identities=7% Similarity=-0.003 Sum_probs=60.1
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhcC-----------------------------------CCCcEEEEecCCCCHHHH
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFSK-----------------------------------YPDIKVGLLSRFQSKAEK 375 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~~-----------------------------------~~gi~V~~l~g~~s~~e~ 375 (835)
..+++|.++++.-+.+.+..+.. .+- .....|+.++++.+..++
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEG-INFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTT-CCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 46899999999888777666543 110 001247899999999999
Q ss_pred HHHHHhHhcCCcceEecchHhhhcccccccccEEEecccc
Q 003268 376 EEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDEEQ 415 (835)
Q Consensus 376 ~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDEaH 415 (835)
......+.+|.++|+|+|. .+...+++.+ ..||+.-..
T Consensus 415 ~~v~~~F~~G~~kVLvAT~-~~a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATE-TFAMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp HHHHHHHHTTCCSEEEECT-HHHHSCCCCC-SEEEESCSE
T ss_pred HHHHHHHHCCCCcEEEEch-HhhCCCCCCC-ceEEEeccc
Confidence 9999999999999999996 4555677777 455554443
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=63.10 E-value=7.3 Score=37.47 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=20.1
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEE
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMV 336 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlV 336 (835)
-+++.|+.|||||+++-...-..-..|..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36889999999999874433322233555543
No 372
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=63.09 E-value=3.5 Score=44.85 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.6
Q ss_pred cEEEEccCCCccHHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a 323 (835)
-++|+||||||||..+...
T Consensus 9 lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHH
Confidence 5789999999999876443
No 373
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=63.00 E-value=3.1 Score=41.06 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+.-+.|+||+|+|||+..
T Consensus 4 g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp -CCEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467899999999999875
No 374
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=62.44 E-value=4.7 Score=39.43 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCccHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~ 322 (835)
++-++|+|+.|||||+++-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999998643
No 375
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.43 E-value=4.6 Score=39.32 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+.-+.++||+|||||+.+
T Consensus 7 g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECcCCCCHHHHH
Confidence 566889999999999875
No 376
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=62.37 E-value=3.4 Score=39.38 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
++.++++|+.|||||+++-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4578899999999998763
No 377
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=62.34 E-value=3.9 Score=41.76 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.6
Q ss_pred CCCCcEEEEccCCCccHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~ 324 (835)
..++.++++|+.|||||+++-..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 357889999999999999875443
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=62.01 E-value=14 Score=39.98 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=27.1
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
....+.++|.+|+|||..+...+......|.+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3457889999999999987655544455677777664
No 379
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=61.83 E-value=4.6 Score=40.68 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.8
Q ss_pred CCCcEEEEccCCCccHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~ 324 (835)
.++.+++.|+.|||||+++-..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999875443
No 380
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=61.82 E-value=3.9 Score=40.52 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.9
Q ss_pred CcEEEEccCCCccHHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~ 324 (835)
|.++++|+.|||||+++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999874433
No 381
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=61.80 E-value=7.7 Score=37.85 Aligned_cols=22 Identities=14% Similarity=-0.130 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCccHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a 323 (835)
.++-++++|+.|||||+++-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 3678899999999999986443
No 382
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=61.78 E-value=5.6 Score=44.82 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=16.9
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+.++|++||+|+|||..+-
T Consensus 49 ~~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 35789999999999998763
No 383
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=61.76 E-value=6.6 Score=40.70 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=19.9
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
.+.-++|.|+.|+|||+.+...+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3667899999999999987665543
No 384
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=61.31 E-value=4.6 Score=38.76 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=16.6
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
+.++++|+.|||||+++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999987443
No 385
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=61.07 E-value=4.1 Score=43.29 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..+|++||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3569999999999998753
No 386
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=60.96 E-value=6.7 Score=38.15 Aligned_cols=21 Identities=24% Similarity=0.031 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++-++++|+.|||||+++-..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 467899999999999986443
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=60.89 E-value=3.9 Score=40.73 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.5
Q ss_pred CCCcEEEEccCCCccHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~ 324 (835)
++|.++++|+.|||||+++-..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999874443
No 388
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=60.70 E-value=3.6 Score=40.18 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
++-++++|+.|||||+++-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999999863
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=60.30 E-value=6.3 Score=42.19 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCCEEEESSTTSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999998753
No 390
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.18 E-value=7.2 Score=42.60 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=23.6
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.|.-+.++|++|+|||+..-..+......++++++..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 3556789999999999975333222223456666654
No 391
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=60.15 E-value=3 Score=42.72 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+..++++||+|+|||..+-
T Consensus 43 ~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHH
Confidence 34568999999999998764
No 392
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=59.75 E-value=16 Score=38.43 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=25.4
Q ss_pred CCcEEEEcc-CCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 303 PMDRLICGD-VGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~LI~g~-TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
++-+++++. .|.|||+++...+......|++|+++
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 344556554 68999999877666666678888877
No 393
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=59.40 E-value=4.8 Score=38.88 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++-++++|+.|||||+++-..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 467899999999999986443
No 394
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=59.35 E-value=3.6 Score=40.58 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=24.3
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHH
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIV 342 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~ 342 (835)
++|.|++|||||.-+...+.. +..+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCC
Confidence 589999999999877654422 567888877543
No 395
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.15 E-value=7.7 Score=39.35 Aligned_cols=18 Identities=44% Similarity=0.719 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+..++++||+|+|||..+
T Consensus 49 ~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345999999999999765
No 396
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=59.00 E-value=5 Score=38.84 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.0
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
|.++++|+.|||||+++-..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHH
Confidence 35789999999999986433
No 397
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=58.66 E-value=14 Score=46.81 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=42.8
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhC------------CCEEEEEcccHHHHHHHHHHHHHhhcC
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSA------------GKQAMVLAPTIVLAKQHFDVVSERFSK 357 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~------------g~qvlVLvPtr~La~Q~~~~~~~~f~~ 357 (835)
...||.|.-|||||.+...-++..+.. -.++|+|+=|+.-|.++.+++.+++..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 456999999999999866555555532 138999999999999999999887643
No 398
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=58.64 E-value=6.1 Score=39.48 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=26.6
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.+.+++.-|.|||.++...+......|++|+++
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 356689999999999887777666778888876
No 399
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=58.50 E-value=4.2 Score=40.35 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCccHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~ 322 (835)
++.+.|.|++|||||+++-.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999998643
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=58.05 E-value=7.1 Score=51.73 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHF 348 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~ 348 (835)
+.+.+++++|++|+|||..++..+..++..|..++++.=. ++..+++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT-SCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc-ccHHHHH
Confidence 4578999999999999999988888888889888887533 3333444
No 401
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=57.56 E-value=4.7 Score=44.88 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.7
Q ss_pred cEEEEccCCCccHHHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~ 324 (835)
-++|+||||||||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 46889999999998764433
No 402
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=57.50 E-value=16 Score=44.44 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=44.1
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecch
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTH 394 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~ 394 (835)
..+.++||.+.|++-+..+.+.+... |+.+.++++.....+..-...+...| .|+|+|.
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 45778999999999999888888764 78899999986554443333444444 7999995
No 403
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.42 E-value=7.5 Score=50.77 Aligned_cols=39 Identities=23% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
+.+..++|+|++|+|||..++..+...+..|..++++.-
T Consensus 32 ~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~t 70 (1706)
T 3cmw_A 32 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 70 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEe
Confidence 457889999999999999988888887778888888764
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=57.39 E-value=5 Score=38.39 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++-++++|+.|||||+++-..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 346889999999999986443
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.35 E-value=5.6 Score=37.88 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.4
Q ss_pred cEEEEccCCCccHHHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~ 324 (835)
.++|+|+.|||||+++-..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999874433
No 406
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=57.02 E-value=5.5 Score=38.58 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.++.+.|+|++|||||+++-.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 356788999999999998643
No 407
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.62 E-value=6.2 Score=39.38 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=16.3
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
.+.-++|+||+|+|||...-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 35678899999999998653
No 408
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=56.37 E-value=6 Score=37.28 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.4
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
+.++++|+.|||||+++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999986443
No 409
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=56.23 E-value=15 Score=43.54 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=50.6
Q ss_pred CCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccccccEE
Q 003268 330 AGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLL 409 (835)
Q Consensus 330 ~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lV 409 (835)
.+.+++|.+||+.-+.++++.+++. ++++..++|..+..+ ..++..+|+|+|. .+...+++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e-------r~~~~~~VLVATd-VaerGIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV-------IPTIGDVVVVATD-ALMTGYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG-------SCSSSCEEEEECT-THHHHCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH-------HHhCCCcEEEECC-hHHccCCCC-CcEE
Confidence 4679999999999999998888753 688999999887654 2345579999995 344445554 7777
Q ss_pred E
Q 003268 410 V 410 (835)
Q Consensus 410 I 410 (835)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 410
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=56.21 E-value=21 Score=37.04 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=24.3
Q ss_pred CcEEEEc-cCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 304 MDRLICG-DVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 304 ~d~LI~g-~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
+-+++.+ ..|.|||.++...+......|++|+++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3444554 468999999877666666678888876
No 411
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=56.21 E-value=4 Score=39.13 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+.-+.++|+.|||||+.+-
T Consensus 9 gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5567899999999998653
No 412
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=56.07 E-value=9.1 Score=39.85 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+..+++.||.|+|||..+
T Consensus 44 ~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345999999999999764
No 413
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=55.87 E-value=3.5 Score=40.88 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCeEEEEecCccChHHHHHHHHhhCC------CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECC-----cCcc-CCC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAFP------GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTN-----IVES-GLD 559 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~p------~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~-----iie~-GID 559 (835)
+.+++|++|+++-++.+++.++.... +..+..++|+.+.... ...+ ....+|+|+|+ .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999888888877766532 5688889998754322 1112 24578999995 2222 356
Q ss_pred CCCcCEEEEecCC
Q 003268 560 IQNANTIIVQDVQ 572 (835)
Q Consensus 560 Ip~v~~VIi~d~p 572 (835)
+.++++||+..++
T Consensus 148 ~~~~~~lViDEah 160 (219)
T 1q0u_A 148 VHTAHILVVDEAD 160 (219)
T ss_dssp GGGCCEEEECSHH
T ss_pred cCcceEEEEcCch
Confidence 6778887765544
No 414
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=55.87 E-value=4.9 Score=39.71 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.1
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
-++|+||.|+|||...
T Consensus 3 pIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4899999999999864
No 415
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=55.63 E-value=5.9 Score=43.17 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.+..++|+|+||||||+.+
T Consensus 174 ~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEEEEESSSSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 3678999999999999753
No 416
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.56 E-value=6.5 Score=38.06 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.8
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
-+.|+||+|+|||+.+
T Consensus 3 ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 3 PIVISGPSGTGKSTLL 18 (186)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 417
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=55.35 E-value=28 Score=43.35 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=57.2
Q ss_pred CCEEEEEcccHHHHHHHHHHHHHhhc-------CCCCcEEEEe-cCCC--------------------CHH---------
Q 003268 331 GKQAMVLAPTIVLAKQHFDVVSERFS-------KYPDIKVGLL-SRFQ--------------------SKA--------- 373 (835)
Q Consensus 331 g~qvlVLvPtr~La~Q~~~~~~~~f~-------~~~gi~V~~l-~g~~--------------------s~~--------- 373 (835)
+.+++|+|+++.-|...++.|.+... ...+++++++ ++.. +..
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 46899999999999999999987541 2223566444 3321 111
Q ss_pred --------------------HHHHHHHhHhcCCcceEecchHhhhcccccccccEEEecc
Q 003268 374 --------------------EKEEHLDMIKHGHLNIIVGTHSLLGSRVVYNNLGLLVVDE 413 (835)
Q Consensus 374 --------------------e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~~l~lVIIDE 413 (835)
.+...++.+++|+++|+|+|.- +...+....+.++.+|=
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~-lltGfDiP~l~tlylDk 675 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM-FLTGFDAPTLNTLFVDK 675 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST-TSSSCCCTTEEEEEEES
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch-HHhCcCcccccEEEEcc
Confidence 2445667788899999999954 44567778888999983
No 418
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.31 E-value=12 Score=37.36 Aligned_cols=31 Identities=29% Similarity=0.199 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 283 TPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 283 tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
+..|..++..+.. +.-+.|.||.|||||+.+
T Consensus 9 ~~g~~~~l~~i~~-------Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDT-------NTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHH-------CSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccC-------CCEEEEECCCCCCHHHHH
Confidence 3456667666632 456789999999999875
No 419
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=55.12 E-value=8.4 Score=41.12 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 288 ~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
.++..+.- .-+.+.-+.|+||+|||||..+-. +.... .+++++.+|
T Consensus 114 ~vL~~vsl---~i~~Ge~vaIvGpsGsGKSTLl~l-L~gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 114 NALKLWLK---GIPKKNCLAFIGPPNTGKSMLCNS-LIHFL--GGSVLSFAN 159 (305)
T ss_dssp HHHHHHHH---TCTTCSEEEEECSSSSSHHHHHHH-HHHHH--TCEEECGGG
T ss_pred hhhccceE---EecCCCEEEEECCCCCcHHHHHHH-Hhhhc--CceEEEEec
Confidence 45555543 235577888999999999986432 22222 456655554
No 420
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=55.02 E-value=9.9 Score=43.39 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=24.4
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.+.-+.++|++|||||+.+-..+......++++++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 456688999999999987533332223456677776
No 421
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=54.92 E-value=6.5 Score=37.07 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.3
Q ss_pred CcEEEEccCCCccHHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRAI 324 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~ 324 (835)
.+++|.|..|||||+++-..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999875443
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=54.72 E-value=6.3 Score=39.46 Aligned_cols=20 Identities=35% Similarity=0.356 Sum_probs=16.3
Q ss_pred CcEEEEccCCCccHHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a 323 (835)
|.+++.|+.|||||+++-..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45789999999999987443
No 423
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=54.69 E-value=12 Score=36.97 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=25.3
Q ss_pred EEEccCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 307 LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
+....+|+|||.+++..+......|++|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 344568999999987777666677889998755
No 424
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=54.30 E-value=10 Score=40.53 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=28.0
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.-+++.|..|.|||.++...+......|++|+++-
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44667899999999998777777777888888873
No 425
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=54.19 E-value=8.9 Score=40.85 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=24.6
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
-++|.|+.|||||+.. ..+.. ...+.+++|+.|.
T Consensus 6 v~~i~G~~GaGKTTll-~~l~~-~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL-RHILN-EQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHH-HHHHH-SCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHH-HHHHh-hcCCCcEEEEEec
Confidence 3678999999999754 33332 2367889999985
No 426
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=54.04 E-value=5.3 Score=38.56 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.4
Q ss_pred cEEEEccCCCccHHHHH
Q 003268 305 DRLICGDVGFGKTEVAL 321 (835)
Q Consensus 305 d~LI~g~TGsGKT~val 321 (835)
-++++|+.|||||+.+-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46889999999998753
No 427
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.01 E-value=17 Score=49.77 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=36.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH--HHHHHHHHhCC-CEEEEEccc
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA--LRAIFCVVSAG-KQAMVLAPT 340 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va--l~a~~~~~~~g-~qvlVLvPt 340 (835)
...+.+++.+..=+-.+.+-+.. .+.++++||||||||.++ +..++..+... ..+.++-|-
T Consensus 900 ~~~l~~~~~~~~K~~ql~e~~~~---r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk 963 (2695)
T 4akg_A 900 RSGFSMSEEFLKKCMQFYYMQKT---QQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTK 963 (2695)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHH---CSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTT
T ss_pred HcCCcccHHHHHHHHHHHHHHHh---cceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 34567777776655555544432 367999999999999985 33333333222 234455554
No 428
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=53.98 E-value=10 Score=40.44 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=27.1
Q ss_pred cEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 305 DRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
-++..|..|.|||.++...+......|++|+++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3455789999999998777777667788888875
No 429
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=53.82 E-value=10 Score=39.09 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccHHHH
Q 003268 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~va 320 (835)
..++++||+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 45999999999999765
No 430
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=53.80 E-value=5.3 Score=39.02 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.7
Q ss_pred cEEEEccCCCccHHHHH
Q 003268 305 DRLICGDVGFGKTEVAL 321 (835)
Q Consensus 305 d~LI~g~TGsGKT~val 321 (835)
.+.|+|+.|||||+++-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 57899999999998763
No 431
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=53.65 E-value=11 Score=39.78 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.0
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
..+.-+.|+|++|||||+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 33556778999999999886
No 432
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=53.64 E-value=6.7 Score=39.69 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.4
Q ss_pred CCCcEEEEccCCCccHHHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
+++-++|.||+||||++++-..+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355678899999999998755443
No 433
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=53.31 E-value=6.9 Score=38.38 Aligned_cols=18 Identities=33% Similarity=0.241 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
++-+.|+|++|||||+++
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999875
No 434
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=53.20 E-value=5.3 Score=39.21 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.+.-+.|.|++|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3556778999999999875
No 435
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=53.11 E-value=7.5 Score=36.59 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.3
Q ss_pred cEEEEccCCCccHHH
Q 003268 305 DRLICGDVGFGKTEV 319 (835)
Q Consensus 305 d~LI~g~TGsGKT~v 319 (835)
-.+|+||+|+|||.+
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999987
No 436
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=53.07 E-value=5.3 Score=39.13 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=14.8
Q ss_pred cEEEEccCCCccHHHHHH
Q 003268 305 DRLICGDVGFGKTEVALR 322 (835)
Q Consensus 305 d~LI~g~TGsGKT~val~ 322 (835)
-++++|+.|||||+.+-.
T Consensus 2 ~I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 368899999999987643
No 437
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=52.85 E-value=5.5 Score=42.86 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccHHH
Q 003268 303 PMDRLICGDVGFGKTEV 319 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~v 319 (835)
+..++++|+||||||+.
T Consensus 171 g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp TCCEEEEESTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56899999999999984
No 438
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=52.78 E-value=13 Score=36.12 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.6
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
-++++|+.|||||...
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4778999999999864
No 439
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=52.61 E-value=7.4 Score=37.85 Aligned_cols=17 Identities=41% Similarity=0.726 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccHHHH
Q 003268 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~va 320 (835)
|.+.+.||.|+|||+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLV 17 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35789999999999864
No 440
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=52.26 E-value=26 Score=42.50 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=52.5
Q ss_pred hCCCEEEEEcccHHHHHHHHHHHHHhhcCCCCcEEEEecCCCCHHHHHHHHHhHhcCCcceEecchHhhhcccccc----
Q 003268 329 SAGKQAMVLAPTIVLAKQHFDVVSERFSKYPDIKVGLLSRFQSKAEKEEHLDMIKHGHLNIIVGTHSLLGSRVVYN---- 404 (835)
Q Consensus 329 ~~g~qvlVLvPtr~La~Q~~~~~~~~f~~~~gi~V~~l~g~~s~~e~~~~l~~l~~g~~dIIIgT~~~L~~~l~~~---- 404 (835)
..+.++||.+.|+.-+..+.+.+... |+.+.++++.....++.....+.. ...|+|+|. +....+...
T Consensus 430 ~~~~pvLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~--~g~VlIATd-mAgRG~DI~l~~~ 501 (844)
T 1tf5_A 430 MTGQPVLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQ--KGAVTIATN-MAGRGTDIKLGEG 501 (844)
T ss_dssp HHTCCEEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTS--TTCEEEEET-TSSTTCCCCCCTT
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCC--CCeEEEeCC-ccccCcCccccch
Confidence 35778999999999998888877653 788999999865555432222222 357999995 333333333
Q ss_pred ----cccEEEeccccc
Q 003268 405 ----NLGLLVVDEEQR 416 (835)
Q Consensus 405 ----~l~lVIIDEaHr 416 (835)
...+||-=|.|.
T Consensus 502 V~~~ggl~VIn~d~p~ 517 (844)
T 1tf5_A 502 VKELGGLAVVGTERHE 517 (844)
T ss_dssp SGGGTSEEEEESSCCS
T ss_pred hhhcCCcEEEEecCCC
Confidence 344666666664
No 441
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=51.89 E-value=13 Score=37.21 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE-ccc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL-APT 340 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL-vPt 340 (835)
++-+++.|+.|||||+++-...-..-..|..++++ -|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 56788999999999998754433333345555443 353
No 442
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=51.56 E-value=6.3 Score=38.98 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
++-+.|.|+.|||||+++-
T Consensus 4 ~~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4678899999999999763
No 443
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.39 E-value=8.5 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCccHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~va 320 (835)
.+.-+.|+||+|+|||+.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567889999999999864
No 444
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.30 E-value=3.1 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=19.0
Q ss_pred CCcEEEEccCCCccHHHHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFC 326 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~ 326 (835)
+.-+++.||+|+|||..++..+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 455799999999999887666544
No 445
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=51.29 E-value=27 Score=36.52 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=25.2
Q ss_pred CCcEEEE-ccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 303 PMDRLIC-GDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~LI~-g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
++-+++. +..|.|||.++...+......|++|+++
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 3444454 4568999999877776666778888877
No 446
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.96 E-value=19 Score=49.89 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=28.2
Q ss_pred hCCCCCCHHHHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 277 QFPYEPTPDQKKAFLDVERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 277 ~~~~~~tp~Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
...+.++|.|..=+-.+.+-+. ..+.++++||||||||.++
T Consensus 883 ~~~L~~~~~~v~KviQLye~~~---vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 883 QRHLVTKQEWVEKILQLHQILN---INHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHT---TCSEEEEECSSSSSHHHHH
T ss_pred HcCCccCHHHHHHHHHHHHHHH---heeeEEEECCCCCCHHHHH
Confidence 3445667766655555554332 2467999999999999985
No 447
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=50.88 E-value=13 Score=42.93 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+-++++|..|.|||.++...+......|++|+++-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 356778899999999998877777777898888864
No 448
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=50.87 E-value=12 Score=38.94 Aligned_cols=52 Identities=4% Similarity=-0.003 Sum_probs=36.8
Q ss_pred CCCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEcccHHHHHHHHHHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLAKQHFDVVSE 353 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPtr~La~Q~~~~~~~ 353 (835)
+++..+|+.|++|+|||..++..+...+.+|-+++++.-. +-..++.+++..
T Consensus 19 ~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~ 70 (260)
T 3bs4_A 19 KHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSR 70 (260)
T ss_dssp TTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHH
Confidence 4566788888999999977777777778888888887643 223455555554
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=50.79 E-value=11 Score=43.01 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEccc
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPT 340 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLvPt 340 (835)
.+.-++|.|++|+|||+.+...+......|..++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 466788999999999988655544443456667666654
No 450
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=50.53 E-value=12 Score=37.76 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=25.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
..-+++.|..|+|||..+...+.... .|.+++++-
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 34577899999999998766555444 677777765
No 451
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=50.50 E-value=8.8 Score=38.87 Aligned_cols=19 Identities=32% Similarity=0.399 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
++-++|+|+.|||||+.+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998753
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=50.42 E-value=9.3 Score=41.40 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHHHHHh---C---CCEEEEEc
Q 003268 289 AFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVS---A---GKQAMVLA 338 (835)
Q Consensus 289 AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~~~~~---~---g~qvlVLv 338 (835)
.++.++.. .-+.+.-+.|+||.|||||..+...+..... . +..++++.
T Consensus 119 ~LD~lL~g--gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 119 SLDKLLGG--GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHHTS--SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHHhcC--CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 45556531 2244677889999999999987665544311 1 24666664
No 453
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=50.11 E-value=13 Score=37.48 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=22.8
Q ss_pred CCCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 302 TPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.++-+++.|+.|||||+++-..+-.. ..+..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l-~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL-VKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-hcCCCceee
Confidence 46778899999999999864443322 224455433
No 454
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=49.96 E-value=7.4 Score=39.25 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=16.1
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
+.+.-++|+||.|+|||+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 34677889999999999864
No 455
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=49.90 E-value=13 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=26.5
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
++..|.-|.|||.++...+......|++|+++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455789999999998777776667788888875
No 456
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=49.87 E-value=11 Score=43.79 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHH
Q 003268 286 QKKAFLDVERDLTERETPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 286 Q~~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val 321 (835)
|..++..+...+.. +..+++.||+|+|||..+-
T Consensus 46 ~~~~l~~l~~~i~~---g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 46 QEHAVEVIKTAANQ---KRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CHHHHHHHHHHHHT---TCCEEEECCTTSSHHHHHH
T ss_pred chhhHhhccccccC---CCEEEEEeCCCCCHHHHHH
Confidence 45555555544422 4689999999999998763
No 457
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=49.38 E-value=17 Score=37.99 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
...++++||.|+|||..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3459999999999998764
No 458
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=49.28 E-value=14 Score=38.55 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
.+-+.+++.-|.|||+++...+......|++|+++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45566678999999999877776666678888876
No 459
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=48.04 E-value=7.4 Score=38.06 Aligned_cols=16 Identities=38% Similarity=0.489 Sum_probs=14.1
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
.+.|.|+.|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999976
No 460
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=48.02 E-value=6.7 Score=39.28 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=11.4
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+.-+.|+||+|||||+++
T Consensus 27 G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCEEEEECSCC----CHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 556789999999999875
No 461
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=47.86 E-value=16 Score=37.01 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.0
Q ss_pred EEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 307 LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
+..+..|.|||.++...+......|++|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467889999999877666655678888876
No 462
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=47.55 E-value=15 Score=36.49 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred EEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 307 LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
+..+..|.|||.++...+......|++|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 33567899999998776666666788888763
No 463
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=47.11 E-value=15 Score=37.55 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=23.4
Q ss_pred EEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 308 ICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 308 I~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
..+..|.|||.++...+......|++|+++
T Consensus 24 ~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 24 MSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp ECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357788999999877766666678888875
No 464
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=47.01 E-value=8.6 Score=43.65 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
+..++++||+|+|||..+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999998753
No 465
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=46.92 E-value=7.6 Score=40.58 Aligned_cols=21 Identities=33% Similarity=0.241 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++-+.|+|+.|||||+++-..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 467889999999999987443
No 466
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=46.86 E-value=7.8 Score=39.74 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.5
Q ss_pred CCCCcEEEEccCCCccHHHH
Q 003268 301 ETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 301 ~~~~d~LI~g~TGsGKT~va 320 (835)
.+++-+++.|..|||||+++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 34677899999999999876
No 467
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=46.73 E-value=9.2 Score=41.81 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.4
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
.++..|.||||||...
T Consensus 87 tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 87 SCFAYGQTGSGKTYTM 102 (360)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEeeCCCCCCCCEEE
Confidence 3688999999999764
No 468
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=46.54 E-value=16 Score=39.25 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=28.0
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.-+++.|.-|.|||.++...+......|++|+++-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45667899999999998877777767788888775
No 469
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=46.45 E-value=16 Score=38.46 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=53.2
Q ss_pred CCeEEEEecCccChHHHHHHHHhhC---CCCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-----C-c-cCCCCC
Q 003268 492 GGQVFYVLPRIKGLEEPMDFLQQAF---PGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----V-E-SGLDIQ 561 (835)
Q Consensus 492 ggqvlVf~~~v~~ie~l~~~L~~~~---p~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-----i-e-~GIDIp 561 (835)
+.+++|++|+++-+..+++.+.... ++..+..++|+...... .....+|||||+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 3579999999998888877776653 57888888887653221 1346789999972 2 2 357888
Q ss_pred CcCEEEEecCC
Q 003268 562 NANTIIVQDVQ 572 (835)
Q Consensus 562 ~v~~VIi~d~p 572 (835)
++.+||+..++
T Consensus 235 ~l~~lVlDEad 245 (300)
T 3fmo_B 235 KIKVFVLDEAD 245 (300)
T ss_dssp GCSEEEETTHH
T ss_pred hceEEEEeCHH
Confidence 99999886655
No 470
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=46.11 E-value=11 Score=38.43 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCCccHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~ 322 (835)
.++.+.|.|+.|||||+++-.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356788999999999987633
No 471
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=45.88 E-value=9.7 Score=36.99 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=46.6
Q ss_pred cCCeEEEEecCccChHH-HHHHHHhhCC-CCcEEEEcCCCCHHHHHHHHHHhhcCCeeEEEECCc-----Ccc-------
Q 003268 491 RGGQVFYVLPRIKGLEE-PMDFLQQAFP-GVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNI-----VES------- 556 (835)
Q Consensus 491 ~ggqvlVf~~~v~~ie~-l~~~L~~~~p-~~~V~~lHG~m~~~ere~vl~~F~~g~~~VLVaT~i-----ie~------- 556 (835)
.+++++|++|+..-++. +.+.+....+ ++.+..++|+.....+...+. +..+|+|+|.- +..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 156 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDA 156 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCccccc
Confidence 36799999999877666 5555554432 578889998764322211111 24679999962 122
Q ss_pred CCCCCCcCEEEEecCCC
Q 003268 557 GLDIQNANTIIVQDVQQ 573 (835)
Q Consensus 557 GIDIp~v~~VIi~d~p~ 573 (835)
++.+.++++||+..++.
T Consensus 157 ~~~~~~~~~iIiDEah~ 173 (216)
T 3b6e_A 157 GVQLSDFSLIIIDECHH 173 (216)
T ss_dssp CCCGGGCSEEEETTC--
T ss_pred ccchhcccEEEEECchh
Confidence 25667788888766654
No 472
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=45.84 E-value=12 Score=36.85 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccHHHH
Q 003268 303 PMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~va 320 (835)
+.-+.|.||.|||||+.+
T Consensus 20 Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 566889999999999864
No 473
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=45.46 E-value=8.5 Score=39.23 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCccHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val 321 (835)
+++-+.|.|+.|||||+++-
T Consensus 21 ~~~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 34568899999999999863
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=45.34 E-value=11 Score=37.25 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.7
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
-.+|+||+|+|||.+.
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999873
No 475
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=45.27 E-value=10 Score=41.29 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccHHHH
Q 003268 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~va 320 (835)
.-.+|+|+||+|||.+.
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34689999999999873
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=45.26 E-value=15 Score=35.54 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.1
Q ss_pred EccCCCccHHHHHHHHHHHHhCCCEEEEEc
Q 003268 309 CGDVGFGKTEVALRAIFCVVSAGKQAMVLA 338 (835)
Q Consensus 309 ~g~TGsGKT~val~a~~~~~~~g~qvlVLv 338 (835)
.+.-|+|||.++...+......|++|+++=
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 366789999998777766666788888774
No 477
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=45.22 E-value=17 Score=36.63 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.5
Q ss_pred EEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 307 LICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 307 LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
+..+..|+|||.++...+......|++|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3457788999999877766666678888875
No 478
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=45.13 E-value=8.2 Score=40.21 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=15.8
Q ss_pred CcEEEEccCCCccHHHHHH
Q 003268 304 MDRLICGDVGFGKTEVALR 322 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~ 322 (835)
+-++++|+.|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578999999999998643
No 479
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=45.10 E-value=11 Score=40.58 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHH----HHhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLDV----ERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~I----l~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+..-|.+.+..+ ..+..+ ....-++..|.||||||...
T Consensus 53 ~~~~sQ~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 53 QSSTSQEQVYNDCAKKIVKDVLE-GYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHT-TCCEEEEEECSTTSSHHHHH
T ss_pred CCCCCHHHHHHHHhhhhHHHHhC-CCeEEEEEECCCCCCCceEe
Confidence 3445566555443 222222 23456778999999999764
No 480
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=44.83 E-value=92 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEccCCCccHHHHHHHHH
Q 003268 288 KAFLDVERDLTERETPMDRLICGDVGFGKTEVALRAIF 325 (835)
Q Consensus 288 ~AI~~Il~~l~~~~~~~d~LI~g~TGsGKT~val~a~~ 325 (835)
++|+.+.. -.++...++.|+.|+|||..+...+.
T Consensus 140 r~ID~L~p----i~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 140 KVVDLLAP----YIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHHHSC----EETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred hHHHHHhh----hccCCEEEEECCCCCCccHHHHHHHh
Confidence 57776643 23467799999999999987644433
No 481
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=44.72 E-value=25 Score=37.63 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccHHHH
Q 003268 304 MDRLICGDVGFGKTEVA 320 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~va 320 (835)
.-+-|.|++|||||+.+
T Consensus 93 ~iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35678999999999875
No 482
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=44.51 E-value=22 Score=35.97 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=23.4
Q ss_pred EEEEc-cCCCccHHHHHHHHHHHHhCCCEEEEEcc
Q 003268 306 RLICG-DVGFGKTEVALRAIFCVVSAGKQAMVLAP 339 (835)
Q Consensus 306 ~LI~g-~TGsGKT~val~a~~~~~~~g~qvlVLvP 339 (835)
++|.| .||+|||.+.+..+.....+|.+|.+.=|
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 44544 58999999976655555567888877544
No 483
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=44.29 E-value=11 Score=41.15 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHH----HhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il----~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+...|.+++..+. .+..+ +...-++..|.||||||...
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLA-GYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHT-TCCEEEEEECSTTSSHHHHH
T ss_pred cCCCCHHHHHHHhhhhHHHHHhC-CCceEEEeecCCCCCCceEE
Confidence 44555666554432 22222 23456777999999999764
No 484
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=44.19 E-value=12 Score=35.70 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.7
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
-.+|+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999764
No 485
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=44.13 E-value=12 Score=38.23 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.5
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
++.+.|.||+|||||+++-..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567999999999999986443
No 486
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=44.01 E-value=10 Score=41.47 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHH----hhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLDVER----DLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il~----~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+..-|.+.+..+.. +..+ ....-++..|.||||||...
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIM-GYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHT-TCEEEEEEEECTTSSHHHHH
T ss_pred eccCchhHHHHHHHHHhHHHHhC-CCceEEEEeCCCCCCCceEE
Confidence 444556655554332 2222 22345777899999999764
No 487
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=43.99 E-value=18 Score=36.70 Aligned_cols=22 Identities=23% Similarity=-0.084 Sum_probs=14.8
Q ss_pred CCCcEEEEccCCCccHHHHHHH
Q 003268 302 TPMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 302 ~~~d~LI~g~TGsGKT~val~a 323 (835)
+++-+++.|+.|||||+++-..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3677889999999999986443
No 488
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.90 E-value=14 Score=40.20 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=14.0
Q ss_pred cEEEEccCCCccHHHH
Q 003268 305 DRLICGDVGFGKTEVA 320 (835)
Q Consensus 305 d~LI~g~TGsGKT~va 320 (835)
-.+|+||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999875
No 489
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=43.59 E-value=20 Score=38.86 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=27.5
Q ss_pred CcEEEEccCCCccHHHHHHHHHHHH--hCCCEEEEEc
Q 003268 304 MDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA 338 (835)
Q Consensus 304 ~d~LI~g~TGsGKT~val~a~~~~~--~~g~qvlVLv 338 (835)
.-++..|..|.|||.++...+.... ..|++|+++-
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3456678999999999877777666 7788888874
No 490
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=43.29 E-value=13 Score=38.31 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCccHHHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVALRA 323 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a 323 (835)
+..++|+|+.|||||+++-..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 467999999999999986433
No 491
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=42.77 E-value=2.5e+02 Score=27.96 Aligned_cols=42 Identities=12% Similarity=-0.077 Sum_probs=25.4
Q ss_pred cccCHHHHHHHHHHHHhcC-CeEEEEecCccChHHHHHHHHhh
Q 003268 474 SAFSKEKVISAIKYELDRG-GQVFYVLPRIKGLEEPMDFLQQA 515 (835)
Q Consensus 474 ~~~~~~~~~~~i~~~l~~g-gqvlVf~~~v~~ie~l~~~L~~~ 515 (835)
..++.+.....+.+.+..+ ....|||.+...+..+.+.|++.
T Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 214 (292)
T 3k4h_A 172 FDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKK 214 (292)
T ss_dssp CCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHh
Confidence 3455556666777777654 33456666655555666777665
No 492
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=42.75 E-value=12 Score=41.10 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHH----HhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il----~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+...|.+++..+. .+..+ ....-++..|.||||||...
T Consensus 77 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 77 DWNAKQFELYDETFRPLVDSVLQ-GFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp CTTCCHHHHHHHTHHHHHHHHHT-TCCEEEEEEESTTSSHHHHH
T ss_pred CCcCchHHHHHHHHHHHHHHHhC-CCeeeEEeecCCCCCCCEeE
Confidence 44555665554432 22222 23456777999999999764
No 493
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=42.64 E-value=20 Score=37.04 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=24.6
Q ss_pred EEEEccCCCccHHHHHHHHHHHHhCCCEEEEE
Q 003268 306 RLICGDVGFGKTEVALRAIFCVVSAGKQAMVL 337 (835)
Q Consensus 306 ~LI~g~TGsGKT~val~a~~~~~~~g~qvlVL 337 (835)
+.+++.-|.|||+++...+......|++|+++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44578889999999877766666678888775
No 494
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=42.55 E-value=11 Score=40.90 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHH----HHhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLDV----ERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~I----l~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+..-|.+.+..+ .....+ ....-++..|.||||||...
T Consensus 70 ~~~~sQ~~Vy~~~~~plv~~~l~-G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 70 PATISQDEMYQALILPLVDKLLE-GFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHH-TCCEEEEEESSTTSSHHHHH
T ss_pred CCCCCHHHHHHhhccchhhHhhC-CCceEEEEecCCCCCCCeEE
Confidence 3444565555442 222222 22345778899999999764
No 495
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=42.30 E-value=12 Score=40.93 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHH----HHHhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLD----VERDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~----Il~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+..-|.+.+.. +..+..+ ....-++..|.||||||...
T Consensus 56 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 56 DMSCKQSDIFDFSIKPTVDDILN-GYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHTT-TCCEEEEEECSTTSSHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHhC-CCcceEEEECCCCCCcceEe
Confidence 344456555543 2223322 23456777999999999764
No 496
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=42.25 E-value=23 Score=38.30 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHH--hCCCEEEEEc
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVV--SAGKQAMVLA 338 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~--~~g~qvlVLv 338 (835)
.+-+++.|.-|.|||.++...+.... ..|++|+++-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35566778999999999877776666 6788888775
No 497
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=42.24 E-value=12 Score=41.16 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHH----HhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il----~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+..-|.+.+..+. .+..+ ....-++..|.||||||...
T Consensus 76 ~~~~~Q~~Vy~~~~~plv~~~l~-G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 76 GPESKQCDVYSVVVSPLIEEVLN-GYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH-TCCEEEEEECSTTSSHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhC-CceEEEEeecCCCCCcceec
Confidence 34445655554432 22222 22456778999999999664
No 498
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=41.96 E-value=25 Score=35.92 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCccHHHHHHHHHHHHhCCCE
Q 003268 303 PMDRLICGDVGFGKTEVALRAIFCVVSAGKQ 333 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val~a~~~~~~~g~q 333 (835)
++-+++.|+.|||||+++-..+-..-..+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5678899999999999864444333334555
No 499
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=41.92 E-value=12 Score=41.46 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHH----HhhhcCCCCCcEEEEccCCCccHHHH
Q 003268 281 EPTPDQKKAFLDVE----RDLTERETPMDRLICGDVGFGKTEVA 320 (835)
Q Consensus 281 ~~tp~Q~~AI~~Il----~~l~~~~~~~d~LI~g~TGsGKT~va 320 (835)
.+...|.+.+..+. .+..+ ....-++..|.||||||...
T Consensus 74 ~~~~tQ~~Vy~~~~~plv~~~l~-G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 74 GERSTQQDIYAGSVQPILRHLLE-GQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CTTCCHHHHHHHHTGGGHHHHTT-TCCEEEEEESCTTSSHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHhhc-CceeeEeeecCCCCCCCeEe
Confidence 45566777666432 22222 23345777899999999764
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=41.67 E-value=14 Score=36.27 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCccHHHHH
Q 003268 303 PMDRLICGDVGFGKTEVAL 321 (835)
Q Consensus 303 ~~d~LI~g~TGsGKT~val 321 (835)
++.+.++|+.|||||.++-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4678999999999999864
Done!