BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003269
(835 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/530 (43%), Positives = 346/530 (65%), Gaps = 20/530 (3%)
Query: 310 LNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFI---------CRTYV 360
LNC+ R T ++IP +Q+L+++ LPLG ++ P + + + CRTY+
Sbjct: 34 LNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYI 93
Query: 361 NPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEY 420
NP+V+F D R+W+CN+C +NDVP + F + T + +RPE+ ++EF+AP+EY
Sbjct: 94 NPFVSFLDQ-RRWKCNLCYRVNDVPEE-FLYNPLTRVYGEPHRRPEVQNATIEFMAPSEY 151
Query: 421 MVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFY 480
M+RPP PP+Y F+ DVS +A+ +G L V Q++ LD LPG RT+IGFITFDSTIHFY
Sbjct: 152 MLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFY 211
Query: 481 NMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAF 540
++ SL+QPQM+++SD++D+F+P+P++LLVNL+ES+ +V LL +LP MF + +SA
Sbjct: 212 GLQESLSQPQMLIVSDIEDVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSAL 271
Query: 541 GPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGD-DLRVYGTDKEHSLRIPEDPFY 599
GPAL+AAF +MS GG++ +FQ LP+LGVG LK R + + R D + P FY
Sbjct: 272 GPALQAAFKLMSPTGGRMSVFQTQLPTLGVGALKPREEPNHRSSAKDIHMT---PSTDFY 328
Query: 600 KQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQST---THGERLRH 656
K++A D + Q+AV+++ S +Y+D+ASLG +++Y+ G VYYYPS+ ++L+
Sbjct: 329 KKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQK 388
Query: 657 ELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMXXXXXX 716
EL R LTR+ +EAVMRIRC KG+ +HGNF +RSTDLL+LP V+ D YA+
Sbjct: 389 ELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEE 448
Query: 717 XXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIE 776
V FQ ALLYT+S GERRIRVHTL PVVS L+D++ AD AI + + +A++
Sbjct: 449 SLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVD 508
Query: 777 KTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPF 826
++++ L DAR+A+ ++ +L YR+ + G ++ P SL+ P
Sbjct: 509 RSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPG--LMVPFSLRLFPL 556
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/530 (43%), Positives = 346/530 (65%), Gaps = 20/530 (3%)
Query: 310 LNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLFI---------CRTYV 360
LNC+ R T ++IP +Q+L+++ LPLG ++ P + + + CRTY+
Sbjct: 39 LNCNPELFRCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQLPVVTSSTIVRCRSCRTYI 98
Query: 361 NPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEY 420
NP+V+F D R+W+CN+C +NDVP + F + T + +RPE+ ++EF+AP+EY
Sbjct: 99 NPFVSFLDQ-RRWKCNLCYRVNDVPEE-FLYNPLTRVYGEPHRRPEVQNATIEFMAPSEY 156
Query: 421 MVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFY 480
M+RPP PP+Y F+ DVS +A+ +G L V Q++ LD LPG RT+IGFITFDSTIHFY
Sbjct: 157 MLRPPQPPVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFY 216
Query: 481 NMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAF 540
++ SL+QPQM+++SD++D+F+P+P++LLVNL+ES+ +V LL +LP MF + +SA
Sbjct: 217 GLQESLSQPQMLIVSDIEDVFIPMPENLLVNLNESKELVQDLLKTLPQMFTKTLETQSAL 276
Query: 541 GPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGD-DLRVYGTDKEHSLRIPEDPFY 599
GPAL+AAF +MS GG++ +FQ LP+LGVG LK R + + R D + P FY
Sbjct: 277 GPALQAAFKLMSPTGGRMSVFQTQLPTLGVGALKPREEPNHRSSAKDIHMT---PSTDFY 333
Query: 600 KQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQST---THGERLRH 656
K++A D + Q+AV+++ S +Y+D+ASLG +++Y+ G VYYYPS+ ++L+
Sbjct: 334 KKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYSAGSVYYYPSYHHQHNPVQVQKLQK 393
Query: 657 ELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMXXXXXX 716
EL R LTR+ +EAVMRIRC KG+ +HGNF +RSTDLL+LP V+ D YA+
Sbjct: 394 ELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFFVRSTDLLSLPNVNPDAGYAVQMSVEE 453
Query: 717 XXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIE 776
V FQ ALLYT+S GERRIRVHTL PVVS L+D++ AD AI + + +A++
Sbjct: 454 SLTDTQLVSFQSALLYTSSKGERRIRVHTLCLPVVSTLNDVFLGADVQAISGLLANMAVD 513
Query: 777 KTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPF 826
++++ L DAR+A+ ++ +L YR+ + G ++ P SL+ P
Sbjct: 514 RSMTASLSDARDALVNAVIDSLSAYRSSVLSNQQPG--LMVPFSLRLFPL 561
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/539 (43%), Positives = 346/539 (64%), Gaps = 19/539 (3%)
Query: 301 PSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPE-----GNLFI 355
P+ A+ LNC R T + IP +Q+L+++ LPLG ++ P + + N +
Sbjct: 27 PNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIV 86
Query: 356 ----CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGS 411
CRTY+NP+V+F D R+W+CN+C +NDVP + F + T + +RPE+ +
Sbjct: 87 RCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEE-FMYNPLTRSYGEPHKRPEVQNST 144
Query: 412 VEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFI 471
VEF+A ++YM+RPP P +Y F++DVS +A+ +G L ++ Q++ LD+LPG RT+IGF+
Sbjct: 145 VEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFM 204
Query: 472 TFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQ 531
TFDSTIHFYN++ L+QPQM+++SD+DD+F+P PD LLVNL ES+ ++ LL++LP+MF
Sbjct: 205 TFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFT 264
Query: 532 DNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSL 591
+ SA GPAL+AAF +MS GG++ +FQ LPSLG G L+ R D + T L
Sbjct: 265 NTRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHL 324
Query: 592 RIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQST--- 648
P FYK++A D + Q AV+++ S +Y+D+ASL ++KY+ G +YYYPSF T
Sbjct: 325 G-PATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNP 383
Query: 649 THGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAY 708
+ E+L+ +L R LTR+ +EAVMRIRC KG+ +HGNF +RSTDLL+L ++ D +
Sbjct: 384 SQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGF 443
Query: 709 AMXXXXXXXXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVS 768
A+ V FQ ALLYT+S GERRIRVHTL PVVS+L+D+Y D A +
Sbjct: 444 AVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAIC 503
Query: 769 VFSRLAIEKTLSHKLEDARNAVQLRLVKALKEY-RNLYAVQHRLGSRMIYPESLKFLPF 826
+ + +A+++++S L DAR+A+ +V +L Y + +QH S ++ P SLK P
Sbjct: 504 LLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQH---SALMAPSSLKLFPL 559
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/544 (36%), Positives = 311/544 (57%), Gaps = 27/544 (4%)
Query: 311 NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAE--PPEGNLFI------------- 355
N RY+R T+ IP + + + +PL AV+ PLA P E + ++
Sbjct: 40 NASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNR 99
Query: 356 CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFV 415
C+ Y+ P++ F + GR+++C C+ +NDVP YF HLD TG+R+D RPEL+ GS EF+
Sbjct: 100 CKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFL 159
Query: 416 APTEYMV--RPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELP---GFPRT--QI 468
A +Y + P PP + F+IDVS +AIR+G++ ++ + +KS LD LP G + ++
Sbjct: 160 ATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRV 219
Query: 469 GFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPS 528
GF+T++ +HFYN+KSSL QPQMMV+SD+ D+FVPL D LVN++ESR+V+ +LLD +P
Sbjct: 220 GFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPE 279
Query: 529 MFQDNMNVESAFGPALKAAFMVM--SRLGGKLLIFQNSLP-SLGVGCLKLRGDDLRVYGT 585
MF D E+ F P ++A + + GKL +F SLP + G LK R DD ++ T
Sbjct: 280 MFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNR-DDRKLINT 338
Query: 586 DKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSF 645
DKE +L P+ Y+ +A + V+++ F ++Y D+A+L + + TGG VY Y SF
Sbjct: 339 DKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASF 398
Query: 646 QSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCD 705
Q ER +L RD+ + ++AVMR+R G+R ++ G F + +T + L +D D
Sbjct: 399 QVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGD 458
Query: 706 KAYAMXXXXXXXXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGA 765
K + Q ALLYT+ G+RR+R+H LA + L+D+Y+ +T
Sbjct: 459 KTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDT 518
Query: 766 IVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLP 825
+++ ++ A L+ ++ R+ + + + L YR A G ++I PE +K LP
Sbjct: 519 LINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRKNCASPSSAG-QLILPECMKLLP 577
Query: 826 FRLH 829
L+
Sbjct: 578 VYLN 581
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 356 bits (913), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 188/544 (34%), Positives = 308/544 (56%), Gaps = 27/544 (4%)
Query: 311 NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPP--EGNLFI------------- 355
N R++R TT P + + + +PL AV+ P A P E L++
Sbjct: 44 NASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNR 103
Query: 356 CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFV 415
C+ Y+ P++ F + GR+++C C +NDVP YF HLD GRR+D ++PEL+ GS E+V
Sbjct: 104 CKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYV 163
Query: 416 APTEYM--VRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQ-----I 468
A +Y +PP PP + F+IDVS S I++G+++++ + +K+ L+++P + + +
Sbjct: 164 ATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRV 223
Query: 469 GFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPS 528
GFIT++ +HF+N+KS+L QPQMMV++D+ ++FVPL D LVN ES+SV+ LLD +P
Sbjct: 224 GFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPD 283
Query: 529 MFQDNMNVESAFGPALKAAFMVMSRLG--GKLLIFQNSLPSLGV-GCLKLRGDDLRVYGT 585
MF D+ E+ F P ++A + GKL IF +SLP+ G LK R DD ++ T
Sbjct: 284 MFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNR-DDKKLVNT 342
Query: 586 DKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSF 645
DKE L P+ Y +A D +V ++ F +Y D+ASLG + + TGG +Y Y +F
Sbjct: 343 DKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNF 402
Query: 646 QSTTHGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCD 705
Q ++ ++L D+ ++ ++A+MR+R G R T++ G ++ +T + + A+DCD
Sbjct: 403 QMHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCD 462
Query: 706 KAYAMXXXXXXXXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGA 765
KA + Q A+LYT G+RR+R+H L S L+D+Y+ +T A
Sbjct: 463 KAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLNCSSQLADLYKSCETDA 522
Query: 766 IVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLP 825
+++ F++ A + L L+ R + + L YR A S++I P+S+K LP
Sbjct: 523 LINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRKNCA-SPSAASQLILPDSMKVLP 581
Query: 826 FRLH 829
++
Sbjct: 582 VYMN 585
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 325 bits (832), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 188/553 (33%), Positives = 299/553 (54%), Gaps = 32/553 (5%)
Query: 301 PSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLA------EPP---EG 351
PS L+ P Y+R T +A+P + SL+ + LP G V+ P +PP E
Sbjct: 171 PSELSNASP-----DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED 225
Query: 352 NLFI----CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPEL 407
L + CR+Y+NP+VTF + GR+WRCN C L NDVP D + D R E+
Sbjct: 226 GLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQ-MDQSDPNDPKSRYD-RNEI 283
Query: 408 TKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGF-PRT 466
+E++AP EY +R P P Y FLIDVS S+I+SG+L T+ LD +P RT
Sbjct: 284 KCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERT 343
Query: 467 QIGFITFDSTIHFY-------NMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVV 519
+I + D+ IH++ N + S Q MM I+DL++ F+P P+ ++V+L R +
Sbjct: 344 RISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNI 403
Query: 520 DTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDD 579
+TLL +P +FQ N+ A GPALK+A+ ++ +GGK+++ +LP+LG+G L+ R +
Sbjct: 404 ETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNES 463
Query: 580 LRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQV 639
V + + L +D FYK D +K QI V+++ S+ Y D+ASL L+++T GQ
Sbjct: 464 GVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 523
Query: 640 YYYPSFQSTTHGE--RLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLL 697
++YP F + + E ++ ++ + E VMR R G+R + ++G+F RS+DL
Sbjct: 524 HFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLC 583
Query: 698 ALPAVDCDKAYAMXXXXXXXXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDM 757
A + D++Y + Y QVA+L + + +RRIR+ TLA P +L+++
Sbjct: 584 AFSTMPRDQSY-LFEVNVDESIMADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEV 642
Query: 758 YQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSR-MI 816
Y AD AI S ++ A+EK L+ L+DAR + + L Y+ V + G +
Sbjct: 643 YASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLR 702
Query: 817 YPESLKFLPFRLH 829
+L+ P +H
Sbjct: 703 LCANLRMFPLLMH 715
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 189/558 (33%), Positives = 301/558 (53%), Gaps = 42/558 (7%)
Query: 301 PSSLAETYPLNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLA------EPP---EG 351
PS L+ P Y+R T +A+P + SL+ + LP G V+ P +PP E
Sbjct: 55 PSELSNASP-----DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED 109
Query: 352 NLFI----CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATG-----RRIDID 402
L + CR+Y+NP+VTF + GR+WRCN C L NDVP +D + R D
Sbjct: 110 GLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVP----MQMDQSDPNDPKSRYD-- 163
Query: 403 QRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG 462
R E+ +E++AP EY +R P P Y FLIDVS S+I+SG+L T+ LD +P
Sbjct: 164 -RNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPN 222
Query: 463 F-PRTQIGFITFDSTIHFY-------NMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSE 514
RT+I + D+ IH++ N + S Q MM I+DL++ F+P P+ ++V+L
Sbjct: 223 HDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKA 282
Query: 515 SRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLK 574
R ++TLL +P +FQ N+ A GPALK+A+ ++ +GGK+++ +LP+LG+G L+
Sbjct: 283 CRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQ 342
Query: 575 LRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKY 634
R + V + + L +D FYK D +K QI V+++ S+ Y D+ASL L+++
Sbjct: 343 RRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRF 402
Query: 635 TGGQVYYYPSFQSTTHGE--RLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLR 692
T GQ ++YP F + + E ++ ++ + E VMR R G+R + ++G+F R
Sbjct: 403 TAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNR 462
Query: 693 STDLLALPAVDCDKAYAMXXXXXXXXXXXXXVYFQVALLYTASCGERRIRVHTLAAPVVS 752
S+DL A + D++Y + Y QVA+L + + +RRIR+ TLA P
Sbjct: 463 SSDLCAFSTMPRDQSY-LFEVNVDESIMADYCYVQVAVLLSLNNSQRRIRIITLAMPTTE 521
Query: 753 NLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLG 812
+L+++Y AD AI S ++ A+EK L+ L+DAR + + L Y+ V + G
Sbjct: 522 SLAEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAG 581
Query: 813 SR-MIYPESLKFLPFRLH 829
+ +L+ P +H
Sbjct: 582 GAPLRLCANLRMFPLLMH 599
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 317 LRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLF----------ICRTYVNPYVTF 366
+R T + P+++S + +P+G + PL E E N+ C++ +NPY
Sbjct: 16 VRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVI 75
Query: 367 TDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRP-ELTKGSVEFVAPTEYMVRPP 425
W C IC N +P Y + + P EL ++E++ V
Sbjct: 76 DPRNSSWSCPICNSRNHLPPQY--------TNLSQENMPLELQSTTIEYITNKPVTV--- 124
Query: 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKS 484
PP++FF++D++ + L+ + ++I + L LP P IG IT+ + + +++ S
Sbjct: 125 -PPIFFFVVDLT---SETENLDSLKESIITSLSLLP--PNALIGLITYGNVVQLHDLSS 177
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 317 LRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNLF----------ICRTYVNPYVTF 366
+R T + P+++S + +P+G + PL E E N+ C++ +NPY
Sbjct: 12 VRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVI 71
Query: 367 TDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRP-ELTKGSVEFVAPTEYMVRPP 425
W C IC N +P Y + + P EL ++E++ V
Sbjct: 72 DPRNSSWSCPICNSRNHLPPQY--------TNLSQENMPLELQSTTIEYITNKPVTV--- 120
Query: 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKS 484
PP++FF++D++ + L+ + ++I + L LP P IG IT+ + + +++ S
Sbjct: 121 -PPIFFFVVDLT---SETENLDSLKESIITSLSLLP--PNALIGLITYGNVVQLHDLSS 173
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 102/561 (18%), Positives = 211/561 (37%), Gaps = 96/561 (17%)
Query: 317 LRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPE----------GNLFICRTYVNPYVTF 366
+R + + P+S+ +R +P+ A+ PL E P+ + CR +NP
Sbjct: 21 VRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQV 80
Query: 367 TDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTK--GSVEFVAPTEYMVRP 424
+ W CN C N P Y A + +++Q EL S+E+V + P
Sbjct: 81 DYRAKLWACNFCYQRNQFPPSY-AGIS------ELNQPAELLPQFSSIEYVV----LRGP 129
Query: 425 PMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNM-- 482
MP ++ +++D + + L+ + ++++ L LP P +G ITF + + +
Sbjct: 130 QMPLIFLYVVD---TCMEDEDLQALKESMQMSLSLLP--PTALVGLITFGRMVQVHELGC 184
Query: 483 -----------KSSLTQPQMMVISDLDDIFV-----------PLPDDLLVNLSESRSVVD 520
L+ Q+ + L + V P P + L + +
Sbjct: 185 EGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRF--LQPVQKIDM 242
Query: 521 TLLDSLPSMFQDNMNVES------AFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGV 570
L D L + +D V + G AL A ++ G ++++F + G
Sbjct: 243 NLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGP 302
Query: 571 GCLKLRGDDLRV-----YGTDKEHSLRIPE-DPFYKQMAADLTKFQIAVNVYAFSDKYTD 624
G + GD+L+ + DK+++ + + ++ +A +++YA + T
Sbjct: 303 GMVV--GDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 360
Query: 625 IASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRE--TAWEAVMRIRCGKGVRF 682
+ + TGG + SF ++ + + ++D+ + + + I+ + ++
Sbjct: 361 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 420
Query: 683 TNYHGNFM-LRSTDLLALPAVDCDKAYAMXXXXXXXXXXXXXVYFQV------------- 728
+ G + L S +YF+V
Sbjct: 421 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGR 480
Query: 729 -----ALLYTASCGERRIRVHTLA---APVVSNLSDMYQQADTGAIVSVFSRLAIEKTLS 780
Y S G+RRIRV T+A A + + ++ D A + +RLAI + +
Sbjct: 481 GAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET 540
Query: 781 HKLEDARNAVQLRLVKALKEY 801
+ D + +L++ +++
Sbjct: 541 EEGPDVLRWLDRQLIRLCQKF 561
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 103/565 (18%), Positives = 216/565 (38%), Gaps = 104/565 (18%)
Query: 317 LRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPE----------GNLFICRTYVNPYVTF 366
+R + + P+S+ +R +P+ A+ PL E P+ + CR +NP
Sbjct: 17 VRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQV 76
Query: 367 TDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTK--GSVEFVAPTEYMVRP 424
+ W CN C N P Y A + +++Q EL S+E+V + P
Sbjct: 77 DYRAKLWACNFCYQRNQFPPSY-AGIS------ELNQPAELLPQFSSIEYVV----LRGP 125
Query: 425 PMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNM-- 482
MP ++ +++D + + L+ + ++++ L LP P +G ITF + + +
Sbjct: 126 QMPLIFLYVVD---TCMEDEDLQALKESMQMSLSLLP--PTALVGLITFGRMVQVHELGC 180
Query: 483 -----------KSSLTQPQMMVISDLDDIFV-----------PLPDDLLVNLSESRSVVD 520
L+ Q+ + L + + P P + L + +
Sbjct: 181 EGISKSYVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRF--LQPVQKIDM 238
Query: 521 TLLDSLPSMFQDNMNVES------AFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGV 570
L D L + +D V + G AL A ++ G ++++F + G
Sbjct: 239 NLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGP 298
Query: 571 GCLKLRGDDLRV-----YGTDKEHSLRIPE-DPFYKQMAADLTKFQIAVNVYAFSDKYTD 624
G + GD+L+ + DK+++ + + ++ +A +++YA + T
Sbjct: 299 GMVV--GDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 356
Query: 625 IASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRE--TAWEAVMRIRCGKGVRF 682
+ + TGG + SF ++ + + ++D+ + + + I+ + ++
Sbjct: 357 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 416
Query: 683 TNYHGNFM-LRSTDLLALPAVDCDK----AYAMXXXXXXXXXXXXXVYFQVALLYTA--- 734
+ G + L S P V ++ +YF+V + A
Sbjct: 417 SGAIGPCVSLNSKG----PCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIP 472
Query: 735 ---------------SCGERRIRVHTLA---APVVSNLSDMYQQADTGAIVSVFSRLAIE 776
S G+RRIRV T+A A + + ++ D A + +RLAI
Sbjct: 473 QGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIY 532
Query: 777 KTLSHKLEDARNAVQLRLVKALKEY 801
+ + + D + +L++ +++
Sbjct: 533 RAETEEGPDVLRWLDRQLIRLCQKF 557
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 101/561 (18%), Positives = 212/561 (37%), Gaps = 96/561 (17%)
Query: 317 LRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPE----------GNLFICRTYVNPYVTF 366
+R + + P+S+ +R +P+ A+ PL E P+ + CR +NP
Sbjct: 17 VRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQV 76
Query: 367 TDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTK--GSVEFVAPTEYMVRP 424
+ W CN C N P Y A + +++Q EL S+E+V + P
Sbjct: 77 DYRAKLWACNFCYQRNQFPPSY-AGIS------ELNQPAELLPQFSSIEYVV----LRGP 125
Query: 425 PMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNM-- 482
MP ++ +++D + + L+ + ++++ L LP P +G ITF + + +
Sbjct: 126 QMPLIFLYVVD---TCMEDEDLQALKESMQMSLSLLP--PTALVGLITFGRMVQVHELGC 180
Query: 483 -----------KSSLTQPQMMVISDLDDIFV-----------PLPDDLLVNLSESRSVVD 520
L+ Q+ + L + + P P + L + +
Sbjct: 181 EGISKSYVFRGTGDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRF--LQPVQKIDM 238
Query: 521 TLLDSLPSMFQDNMNVES------AFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGV 570
L D L + +D V + G AL A ++ G ++++F + G
Sbjct: 239 NLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGP 298
Query: 571 GCLKLRGDDLRV-----YGTDKEHSLRIPE-DPFYKQMAADLTKFQIAVNVYAFSDKYTD 624
G + GD+L+ + DK+++ + + ++ +A +++YA + T
Sbjct: 299 GMVV--GDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTG 356
Query: 625 IASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRE--TAWEAVMRIRCGKGVRF 682
+ + TGG + SF ++ + + ++D+ + + + I+ + ++
Sbjct: 357 LLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKI 416
Query: 683 TNYHGNFM-LRSTDLLALPAVDCDKAYAMXXXXXXXXXXXXXVYFQVALLYTA------- 734
+ G + L S +YF+V + A
Sbjct: 417 SGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGR 476
Query: 735 -----------SCGERRIRVHTLA---APVVSNLSDMYQQADTGAIVSVFSRLAIEKTLS 780
S G+RRIRV T+A A + + ++ D A + +RLAI + +
Sbjct: 477 GAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAET 536
Query: 781 HKLEDARNAVQLRLVKALKEY 801
+ D + +L++ +++
Sbjct: 537 EEGPDVLRWLDRQLIRLCQKF 557
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 439 SAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSL-TQPQMMVISDL 497
S+ ++E+V + K C P +T + + + M+S + + + +DL
Sbjct: 526 SSAYESLMEIVKNSAKDCY---PAVQKTTL--VIMERLQQVLQMESHIQSTSDRIQFNDL 580
Query: 498 DDIFVPLPDDLL--VNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG 555
+ ++L V ++ + D ++ SL MFQ AL A ++ LG
Sbjct: 581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
Query: 556 GKLLIFQNSL-PSLGVG 571
G+ L + + P LG+G
Sbjct: 641 GEFLKYMEAFKPFLGIG 657
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 439 SAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSL-TQPQMMVISDL 497
S+ ++E+V + K C P +T + + + M+S + + + +DL
Sbjct: 526 SSAYESLMEIVKNSAKDCY---PAVQKTTL--VIMERLQQVLQMESHIQSTSDRIQFNDL 580
Query: 498 DDIFVPLPDDLL--VNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG 555
+ ++L V ++ + D ++ SL MFQ AL A ++ LG
Sbjct: 581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
Query: 556 GKLLIFQNSL-PSLGVG 571
G+ L + + P LG+G
Sbjct: 641 GEFLKYMEAFKPFLGIG 657
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 439 SAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSL-TQPQMMVISDL 497
S+ ++E+V + K C P +T + + + M+S + + + +DL
Sbjct: 526 SSAYESLMEIVKNSAKDCY---PAVQKTTL--VIMERLQQVLQMESHIQSTSDRIQFNDL 580
Query: 498 DDIFVPLPDDLL--VNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG 555
+ ++L V ++ + D ++ SL MFQ AL A ++ LG
Sbjct: 581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
Query: 556 GKLLIFQNSL-PSLGVG 571
G+ L + + P LG+G
Sbjct: 641 GEFLKYMEAFKPFLGIG 657
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 439 SAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSL-TQPQMMVISDL 497
S+ ++E+V + K C P +T + + + M+S + + + +DL
Sbjct: 401 SSAYESLMEIVKNSAKDCY---PAVQKTTL--VIMERLQQVLQMESHIQSTSDRIQFNDL 455
Query: 498 DDIFVPLPDDLL--VNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG 555
+ ++L V ++ + D ++ SL MFQ AL A ++ LG
Sbjct: 456 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 515
Query: 556 GKLLIFQNSL-PSLGVG 571
G+ L + + P LG+G
Sbjct: 516 GEFLKYMEAFKPFLGIG 532
>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
Length = 530
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 542 PALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKL----RGDDLRVYGTDKEHSLRIPEDP 597
PA K F+V S G K+ + Q +G LK+ RG+ + +G + IPEDP
Sbjct: 234 PAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLNSSIPEDP 293
Query: 598 FYKQMAADLTKFQIAVNVYA 617
K AD+ K++I ++ Y+
Sbjct: 294 SIK---ADINKWRIKLDNYS 310
>pdb|3J26|A Chain A, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|B Chain B, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|C Chain C, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|D Chain D, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|E Chain E, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|F Chain F, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|G Chain G, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|H Chain H, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|I Chain I, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|J Chain J, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|K Chain K, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|L Chain L, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
pdb|3J26|M Chain M, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
Length = 508
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 380 LLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYM--VRP----PMPPLY--- 430
+LN+ ++H D T D+ + ++ F P+ Y+ V P P+PP
Sbjct: 233 VLNNNLARIWSHSDITN---DVSGNSTIGSMNISFQQPSMYLGFVTPRLNIPIPPRITYP 289
Query: 431 FFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQ 490
+F + + ++ + + T KS + +L PR F+ + + N+ + +T P
Sbjct: 290 YFKLSRYTTQFQNTLAPNASSTFKSNVVQLDSIPRKLYLFVKQSDNVIYQNLNNQITTPD 349
Query: 491 MMV-ISDLD 498
+ + I++L+
Sbjct: 350 VFLQINNLN 358
>pdb|4H1Y|P Chain P, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Psb11552
Length = 546
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 542 PALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKL----RGDDLRVYGTDKEHSLRIPEDP 597
PA K F+V S G K+ + Q +G LK+ RG+ + +G IPEDP
Sbjct: 256 PAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDP 315
Query: 598 FYKQMAADLTKFQIAVNVYA 617
K AD+ K++I ++ Y+
Sbjct: 316 SIK---ADINKWRIKLDDYS 332
>pdb|4H2F|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form I (Open)
In Complex With Adenosine
pdb|4H2G|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Adenosine
Length = 546
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 542 PALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKL----RGDDLRVYGTDKEHSLRIPEDP 597
PA K F+V S G K+ + Q +G LK+ RG+ + +G IPEDP
Sbjct: 256 PAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDP 315
Query: 598 FYKQMAADLTKFQIAVNVYA 617
K AD+ K++I ++ Y+
Sbjct: 316 SIK---ADINKWRIKLDDYS 332
>pdb|4H2B|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Ii (Open)
In Complex With Baicalin
Length = 547
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 542 PALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKL----RGDDLRVYGTDKEHSLRIPEDP 597
PA K F+V S G K+ + Q +G LK+ RG+ + +G IPEDP
Sbjct: 257 PAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDP 316
Query: 598 FYKQMAADLTKFQIAVNVYA 617
K AD+ K++I ++ Y+
Sbjct: 317 SIK---ADINKWRIKLDDYS 333
>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
(Closed) In Complex With Ampcp
Length = 532
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 542 PALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKL----RGDDLRVYGTDKEHSLRIPEDP 597
PA K F+V S G K+ + Q +G LK+ RG+ + +G IPEDP
Sbjct: 234 PAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDP 293
Query: 598 FYKQMAADLTKFQIAVNVYA 617
K AD+ K++I ++ Y+
Sbjct: 294 SIK---ADINKWRIKLDDYS 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,589,530
Number of Sequences: 62578
Number of extensions: 833621
Number of successful extensions: 1677
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1621
Number of HSP's gapped (non-prelim): 34
length of query: 835
length of database: 14,973,337
effective HSP length: 107
effective length of query: 728
effective length of database: 8,277,491
effective search space: 6026013448
effective search space used: 6026013448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)