Query 003269
Match_columns 835
No_of_seqs 251 out of 763
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 100.0 7E-127 2E-131 1146.9 51.4 530 299-830 28-586 (770)
2 3eh2_A Protein transport prote 100.0 6E-126 2E-130 1138.1 53.5 530 299-830 24-582 (766)
3 3eh1_A Protein transport prote 100.0 2E-123 7E-128 1113.1 52.7 525 301-830 26-563 (751)
4 1m2v_B SEC24, protein transpor 100.0 1E-123 5E-128 1130.7 51.1 563 262-830 112-716 (926)
5 1pcx_A Protein transport prote 100.0 3E-121 1E-125 1103.8 49.9 521 305-830 50-600 (810)
6 1m2o_A SEC23, protein transpor 100.0 3E-106 9E-111 970.3 42.8 495 310-830 5-589 (768)
7 2nut_A Protein transport prote 100.0 2E-106 7E-111 970.6 40.2 497 311-830 15-587 (769)
8 4fx5_A VON willebrand factor t 99.4 7.8E-10 2.7E-14 126.4 35.3 303 427-792 77-407 (464)
9 2yrc_A Protein transport prote 99.2 2.9E-12 1E-16 105.5 1.9 40 354-394 13-54 (59)
10 3ibs_A Conserved hypothetical 98.9 6.1E-08 2.1E-12 98.0 18.1 173 426-662 10-213 (218)
11 3n2n_F Anthrax toxin receptor 98.6 1.7E-06 5.9E-11 84.9 17.4 154 428-644 8-168 (185)
12 1shu_X Anthrax toxin receptor 98.6 2.8E-06 9.6E-11 83.1 18.3 154 427-643 6-164 (182)
13 1atz_A VON willebrand factor; 98.5 1.8E-06 6.3E-11 85.6 16.6 156 427-646 5-171 (189)
14 4hqf_A Thrombospondin-related 98.5 1.2E-06 4E-11 93.0 15.8 166 426-647 20-197 (281)
15 1q0p_A Complement factor B; VO 98.5 3.5E-06 1.2E-10 85.1 18.3 169 426-645 14-205 (223)
16 1ijb_A VON willebrand factor; 98.5 3E-06 1E-10 85.4 17.0 174 427-662 13-195 (202)
17 4b4t_W RPN10, 26S proteasome r 98.5 7.4E-07 2.5E-11 94.7 12.6 148 429-637 5-163 (268)
18 4hqo_A Sporozoite surface prot 98.5 2.5E-06 8.4E-11 90.0 16.0 164 427-645 18-192 (266)
19 2b2x_A Integrin alpha-1; compu 98.4 4.8E-06 1.6E-10 85.0 16.2 171 427-662 22-211 (223)
20 2odp_A Complement C2; C3/C5 co 98.4 9.5E-06 3.2E-10 92.8 19.6 170 426-645 8-199 (509)
21 1v7p_C Integrin alpha-2; snake 98.4 1E-05 3.4E-10 81.1 17.2 171 427-662 6-195 (200)
22 1n3y_A Integrin alpha-X; alpha 98.4 2.7E-06 9.4E-11 84.5 12.7 173 426-662 8-193 (198)
23 1mf7_A Integrin alpha M; cell 98.4 1.8E-06 6E-11 86.0 11.1 173 427-662 5-189 (194)
24 2x31_A Magnesium-chelatase 60 98.3 2.5E-08 8.6E-13 98.9 -3.1 178 426-662 4-187 (189)
25 1rrk_A Complement factor B; BB 98.3 1.1E-05 3.7E-10 91.8 18.1 175 429-645 3-191 (497)
26 1pt6_A Integrin alpha-1; cell 98.3 1E-05 3.5E-10 81.8 14.8 172 427-663 7-197 (213)
27 2x5n_A SPRPN10, 26S proteasome 98.2 1.3E-05 4.5E-10 81.0 13.4 145 429-635 4-159 (192)
28 1mjn_A Integrin alpha-L; rossm 98.1 3E-05 1E-09 76.5 13.4 163 428-660 3-177 (179)
29 3hrz_D Complement factor B; se 98.1 3.5E-06 1.2E-10 100.7 7.9 178 426-645 242-433 (741)
30 1jey_B KU80; double-strand DNA 98.0 3E-05 1E-09 90.6 12.7 148 428-620 8-169 (565)
31 3zqk_A VON willebrand factor; 97.9 0.00013 4.5E-09 73.1 13.4 151 426-647 20-181 (199)
32 2xgg_A Microneme protein 2; A/ 97.7 0.00019 6.6E-09 70.5 12.3 143 427-628 17-168 (178)
33 3k6s_A Integrin alpha-X; cell 97.5 9.5E-05 3.2E-09 92.6 8.1 160 427-647 130-302 (1095)
34 1jey_A KU70; double-strand DNA 96.9 0.029 1E-06 66.0 19.6 156 428-621 36-208 (609)
35 2ww8_A RRGA, cell WALL surface 96.7 0.0026 8.8E-08 78.0 8.8 146 425-570 222-394 (893)
36 3fcs_B Integrin beta-3; beta p 96.6 0.094 3.2E-06 62.6 21.3 264 427-715 111-402 (690)
37 3t3p_B Integrin beta-3; integr 96.2 0.23 8E-06 56.4 20.0 269 427-715 111-402 (472)
38 3vi3_B Integrin beta-1; beta p 95.9 0.14 4.9E-06 57.8 16.5 269 427-715 122-411 (454)
39 3rag_A Uncharacterized protein 95.9 0.024 8.3E-07 59.1 9.4 94 426-553 133-227 (242)
40 3k6s_B Integrin beta-2; cell r 95.7 0.027 9.2E-07 67.1 10.2 203 427-643 104-324 (687)
41 3v4v_B Integrin beta-7; cell a 95.6 0.77 2.6E-05 52.5 20.9 264 427-715 132-425 (503)
42 1yvr_A RO autoantigen, 60-kDa 95.4 0.029 1E-06 64.9 8.9 108 424-569 365-475 (538)
43 2iue_A Pactolus I-domain; memb 92.0 2 6.8E-05 43.9 13.6 114 429-574 5-125 (212)
44 2nvo_A RO sixty-related protei 90.7 0.48 1.6E-05 54.8 8.5 105 424-568 359-470 (535)
45 2j9u_B VPS36, vacuolar protein 66.7 1.3 4.4E-05 37.9 0.2 19 371-389 16-34 (76)
46 3rag_A Uncharacterized protein 57.7 26 0.00087 36.4 8.1 44 600-643 28-75 (242)
47 6rxn_A Rubredoxin; electron tr 45.2 8.9 0.0003 29.7 1.7 13 371-383 3-15 (46)
48 1e8j_A Rubredoxin; iron-sulfur 41.4 13 0.00043 29.6 2.0 13 371-383 2-14 (52)
49 1b3t_A Protein (nuclear protei 41.3 32 0.0011 32.0 5.0 32 446-477 112-144 (147)
50 1dx8_A Rubredoxin; electron tr 39.6 12 0.0004 31.6 1.7 13 371-383 6-18 (70)
51 1yk4_A Rubredoxin, RD; electro 35.5 14 0.00049 29.2 1.5 12 371-382 1-12 (52)
52 2v3b_B Rubredoxin 2, rubredoxi 35.1 14 0.00047 29.7 1.4 12 371-382 2-13 (55)
53 2kn9_A Rubredoxin; metalloprot 34.9 13 0.00046 32.1 1.4 13 370-382 25-37 (81)
54 2a20_A Regulating synaptic mem 26.5 16 0.00055 29.7 0.4 23 354-380 37-59 (62)
55 4rxn_A Rubredoxin; electron tr 24.5 31 0.0011 27.6 1.7 12 371-382 2-13 (54)
56 1s24_A Rubredoxin 2; electron 23.4 26 0.0009 30.7 1.2 12 370-381 33-44 (87)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=6.6e-127 Score=1146.90 Aligned_cols=530 Identities=35% Similarity=0.685 Sum_probs=509.6
Q ss_pred CCCCCCCccccc----cCCCCcEeeecCccCCCHHHHhhcCCCeEEEEccCCCCCCCC------------C---CCccee
Q 003269 299 VEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGN------------L---FICRTY 359 (835)
Q Consensus 299 ~~pp~~~~~~~~----N~sP~yiR~T~~~iP~t~~l~~~~~LPlgivv~Pfa~~~~~e------------~---~rCrAY 359 (835)
.+||+++++|++ ||+|+|||+|||+||.|++++++++||||++|+||++..+.| . +|||||
T Consensus 28 ~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCray 107 (770)
T 3efo_B 28 QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAY 107 (770)
T ss_dssp CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCB
T ss_pred CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCC
Confidence 478999999987 999999999999999999999999999999999999865422 1 899999
Q ss_pred ecccceEeeCCceEEEcCCCCCCCCCcccccccCcccccCCCCCCCCccccceEEecccccc--CCCCCCCEEEEEEecc
Q 003269 360 VNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYM--VRPPMPPLYFFLIDVS 437 (835)
Q Consensus 360 iNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~--~r~p~pp~yvFvIDvS 437 (835)
|||||+|+++|++|+||||+..|++|.+|+++++++|+|.|+++||||++|+|||++|+||+ .|+++||+||||||||
T Consensus 108 iNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs 187 (770)
T 3efo_B 108 MCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVS 187 (770)
T ss_dssp SCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECS
T ss_pred cCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCCCcEEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999 5899999999999999
Q ss_pred hhHHhhchHHHHHHHHHHHHhcCCCC-----CCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCCcccch
Q 003269 438 ISAIRSGMLEVVAQTIKSCLDELPGF-----PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNL 512 (835)
Q Consensus 438 ~~av~sG~l~~~~~sI~~~L~~Lp~~-----~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~lLv~l 512 (835)
.+++++|+++++|++|+++|+.||++ +|++|||||||++||||||++.+++++|+||+|++|+|+|++++|||++
T Consensus 188 ~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~d~f~P~~~~~Lv~l 267 (770)
T 3efo_B 188 YSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGEVFVPLLDGFLVNY 267 (770)
T ss_dssp HHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTSCCCCCSSSSSBCT
T ss_pred hhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccccccCCCccceeeeH
Confidence 99999999999999999999999964 3689999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHh--cCCEEEEEecCCCC-CCcccccccCCcccccCCcccc
Q 003269 513 SESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LGGKLLIFQNSLPS-LGVGCLKLRGDDLRVYGTDKEH 589 (835)
Q Consensus 513 ~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~sg~Pt-~GpG~L~~re~~~r~~gt~~e~ 589 (835)
+||++.|+++||+|+.+|.+++..++|+|+||++|+++|+. +||||++|++|+|+ +|||+|+.|++ .+..+++||+
T Consensus 268 ~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~-~~~~~t~ke~ 346 (770)
T 3efo_B 268 QESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGKLFIFHSSLPTAEAPGKLKNRDD-KKLVNTDKEK 346 (770)
T ss_dssp TTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCCEEEEEEECSCCCSSSTTCCCCCCC-CCCSSCSCGG
T ss_pred HHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCcccccccc-ccccCCcchh
Confidence 99999999999999999998888999999999999999985 79999999999888 89999999975 5678889999
Q ss_pred ccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcchhHHHHHHHHHhhcccccccc
Q 003269 590 SLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWE 669 (835)
Q Consensus 590 ~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~d~~~L~~dL~r~l~r~~g~~ 669 (835)
++++++++|||+||++|+++||+||||+++.+|+||++|+.|+++|||++|+|++|+.++|.++|.+||+|.+++++||+
T Consensus 347 ~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~~~~gf~ 426 (770)
T 3efo_B 347 ILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFD 426 (770)
T ss_dssp GGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred hhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhhhceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCceEeeeecCcccCCCCceEeccCCCCCcEEEEEeeccccCCCceeEEEEEEEEEecCCcEEEEEEcCccc
Q 003269 670 AVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAP 749 (835)
Q Consensus 670 a~mrVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Sia~~f~~d~~l~~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lp 749 (835)
|+||||||+||+|+++||||+++++++|+++++|+|++|+|+|+|++++.+...+|||+|++||+.+|||||||||++++
T Consensus 427 a~mrVR~S~gl~v~~~~G~~~~~~t~~~~l~~~~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~ 506 (770)
T 3efo_B 427 AIMRVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNLGLN 506 (770)
T ss_dssp EEEEEEECTTEEEEEEESSCBCSSSSCEEEEEEESSCCEEEEEEESSCCBTTTBEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred EEEEEEecCCeEEEEeECCeeCCCCCceEecccCcCceEEEEEEecCCCCCCCcEEEEEEEEEEcCCCCEEEEEEEechh
Confidence 99999999999999999999999999999999999999999999999998777899999999999999999999999999
Q ss_pred ccCCHHHHHHhcChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceecCcccchhhHHHh
Q 003269 750 VVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPFRLH 829 (835)
Q Consensus 750 vts~l~~vf~s~D~eai~~llaK~a~~~~~~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~gqLiLPeslKlLPly~l 829 (835)
|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++|++||| +|++.++++||+|||+||+||+||+
T Consensus 507 vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~l~~~r~~L~~~~~~~l~~Yrk-~~~~~~s~~ql~Lp~~lkllP~~~~ 585 (770)
T 3efo_B 507 CSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAHMLACYRK-NCASPSAASQLILPDSMKVLPVYMN 585 (770)
T ss_dssp EESCHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH-HTSCCCCTTEEEECGGGTTHHHHHH
T ss_pred hcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH-hccCCCCccceecCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9988888899999999999999987
Q ss_pred c
Q 003269 830 D 830 (835)
Q Consensus 830 ~ 830 (835)
+
T Consensus 586 ~ 586 (770)
T 3efo_B 586 C 586 (770)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=5.9e-126 Score=1138.15 Aligned_cols=530 Identities=36% Similarity=0.692 Sum_probs=505.3
Q ss_pred CCCCCCCccccc----cCCCCcEeeecCccCCCHHHHhhcCCCeEEEEccCCCCCCCCC---------------CCccee
Q 003269 299 VEPSSLAETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL---------------FICRTY 359 (835)
Q Consensus 299 ~~pp~~~~~~~~----N~sP~yiR~T~~~iP~t~~l~~~~~LPlgivv~Pfa~~~~~e~---------------~rCrAY 359 (835)
.+||+++++|++ ||+|+|||+|||+||.|++++++++||||++|+||++..+.|. +|||||
T Consensus 24 ~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCray 103 (766)
T 3eh2_A 24 QVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAY 103 (766)
T ss_dssp CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCB
T ss_pred CCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCE
Confidence 579999999987 9999999999999999999999999999999999998765321 899999
Q ss_pred ecccceEeeCCceEEEcCCCCCCCCCcccccccCcccccCCCCCCCCccccceEEeccccccC--CCCCCCEEEEEEecc
Q 003269 360 VNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMV--RPPMPPLYFFLIDVS 437 (835)
Q Consensus 360 iNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~--r~p~pp~yvFvIDvS 437 (835)
|||||+|+++|++|+||||+..|++|.+|+++++++|+|.|+++||||++|+|||+++.||+. |+++||+||||||||
T Consensus 104 iNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs 183 (766)
T 3eh2_A 104 MCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVS 183 (766)
T ss_dssp CCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECS
T ss_pred eCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCCCCEEEEEEECc
Confidence 999999999999999999999999999999999999999999999999999999999999996 889999999999999
Q ss_pred hhHHhhchHHHHHHHHHHHHhcCCCC-----CCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCCcccch
Q 003269 438 ISAIRSGMLEVVAQTIKSCLDELPGF-----PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNL 512 (835)
Q Consensus 438 ~~av~sG~l~~~~~sI~~~L~~Lp~~-----~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~lLv~l 512 (835)
.+++++|+++++|++|+++|+.||++ ++++|||||||++||||||+.++++++|+||+|++|+|+|++++|||++
T Consensus 184 ~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~d~f~P~~~~~lv~l 263 (766)
T 3eh2_A 184 YNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVADMFVPLLDGFLVNV 263 (766)
T ss_dssp HHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTTTCCCCCCTTSSBCT
T ss_pred hhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChhhhccccccceeEeH
Confidence 99999999999999999999999964 4699999999999999999998889999999999999999999999999
Q ss_pred hhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHh--cCCEEEEEecCCCC-CCcccccccCCcccccCCcccc
Q 003269 513 SESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LGGKLLIFQNSLPS-LGVGCLKLRGDDLRVYGTDKEH 589 (835)
Q Consensus 513 ~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~--~GGkIivF~sg~Pt-~GpG~L~~re~~~r~~gt~~e~ 589 (835)
+||++.|+++||+|+.+|.+++..++|+|+||++|+++|+. .||||++|++|+|+ +|||+|+.|++ .+..+++||+
T Consensus 264 ~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~GGkI~~F~s~lP~t~GpG~l~~r~~-~~~~~sdke~ 342 (766)
T 3eh2_A 264 NESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAECAGKLFLFHTSLPIAEAPGKLKNRDD-RKLINTDKEK 342 (766)
T ss_dssp TTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTCCEEEEEEECSCCCSSSTTCCCCCCC-GGGTTSTTGG
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCCCcEEEEEecCCCCcCCCcccccccc-cccCCCcchh
Confidence 99999999999999999998888999999999999999985 69999999999888 79999999975 5678889999
Q ss_pred ccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcchhHHHHHHHHHhhcccccccc
Q 003269 590 SLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRDLTRETAWE 669 (835)
Q Consensus 590 ~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~d~~~L~~dL~r~l~r~~g~~ 669 (835)
++++++++|||+||++|+++||+||||+++.+|+||++|+.|+++|||++++|++|+.++|.++|.+||+|.+++++||+
T Consensus 343 ~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~~~~gf~ 422 (766)
T 3eh2_A 343 TLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFD 422 (766)
T ss_dssp GGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred hhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhhhcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCceEeeeecCcccCCCCceEeccCCCCCcEEEEEeeccccCCCceeEEEEEEEEEecCCcEEEEEEcCccc
Q 003269 670 AVMRIRCGKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAP 749 (835)
Q Consensus 670 a~mrVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Sia~~f~~d~~l~~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lp 749 (835)
|+||||||+||+|+++||||+.+++++|+++++|+|++|+|+|+|++++.+...+|||+|++||+.+|||||||||++++
T Consensus 423 a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~f~~~~~l~~~~~~~~Q~allYt~~~G~RRiRV~T~~l~ 502 (766)
T 3eh2_A 423 AVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQCALLYTSCAGQRRLRIHNLALN 502 (766)
T ss_dssp EEEEEEECTTEEEEEEEESCBCSSSSCEEEEEEETTCCEEEEEEESSCCCTTTCEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred EEEEEEecCCeEEEEeECCeecCCCCceeeccCCCCceEEEEEEecCCCCCCCcEEEEEEEEeEcCCCCEEEEEEEEeeE
Confidence 99999999999999999999999999999999999999999999999998778999999999999999999999999999
Q ss_pred ccCCHHHHHHhcChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceecCcccchhhHHHh
Q 003269 750 VVSNLSDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPFRLH 829 (835)
Q Consensus 750 vts~l~~vf~s~D~eai~~llaK~a~~~~~~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~gqLiLPeslKlLPly~l 829 (835)
|++++.++|+++|+||++++|+|+|++++++++++++|+.|+++|+++|++||| +|++.++.|||+|||+||+||+||+
T Consensus 503 vt~~~~~v~~~~Dqea~~~llar~av~~~~~~~~~~~R~~l~~~~~~~l~~Yrk-~~~~~~s~~ql~lp~~lkllP~~~~ 581 (766)
T 3eh2_A 503 CCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVRDTLITQCAQILACYRK-NCASPSSAGQLILPECMKLLPVYLN 581 (766)
T ss_dssp EESSHHHHHHTBCHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHH-HC------CCCCCCGGGTTHHHHHH
T ss_pred ecCCHHHHHHhcCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHh-hccCCCCccceecCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 8988888899999999999999997
Q ss_pred c
Q 003269 830 D 830 (835)
Q Consensus 830 ~ 830 (835)
+
T Consensus 582 ~ 582 (766)
T 3eh2_A 582 C 582 (766)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=2.1e-123 Score=1113.07 Aligned_cols=525 Identities=45% Similarity=0.801 Sum_probs=486.5
Q ss_pred CCCCCcccc-ccCCCCcEeeecCccCCCHHHHhhcCCCeEEEEccCCCCCCC-----C-C---CCcceeecccceEeeCC
Q 003269 301 PSSLAETYP-LNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEG-----N-L---FICRTYVNPYVTFTDAG 370 (835)
Q Consensus 301 pp~~~~~~~-~N~sP~yiR~T~~~iP~t~~l~~~~~LPlgivv~Pfa~~~~~-----e-~---~rCrAYiNPf~~f~~~G 370 (835)
.|...+++. .||+|+|||+|||+||.|++++++++||||++|+||++..+. + . +||||||||||+|.+ |
T Consensus 26 ~~~~~~~~~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~~P~v~~~~p~RC~rCrayiNPf~~f~~-~ 104 (751)
T 3eh1_A 26 VPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQLPVITSNTIVRCRSCRTYINPFVSFID-Q 104 (751)
T ss_dssp CCCCCHHHHHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSCCCEECCSCCCBCTTTCCBCCTTCEESS-S
T ss_pred CCCCCccccccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCCCCccCCCCCCcccCccCEeCCceEEec-C
Confidence 334556664 499999999999999999999999999999999999976431 1 1 899999999999966 5
Q ss_pred ceEEEcCCCCCCCCCcccccccCcccccCCCCCCCCccccceEEeccccccCCCCCCCEEEEEEecchhHHhhchHHHHH
Q 003269 371 RKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVA 450 (835)
Q Consensus 371 ~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~ 450 (835)
++|+||||+..|++|.+|+++- .++++.|.++||||++|||||++++|||+|+++||+||||||||.+++++|+++++|
T Consensus 105 ~~w~Cn~C~~~N~~P~~y~~~~-~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~ 183 (751)
T 3eh1_A 105 RRWKCNLCYRVNDVPEEFMYNP-LTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILC 183 (751)
T ss_dssp SEEECTTTCCEEECCGGGC----------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHH
T ss_pred CEEEcccccCCCCCCHHHhccc-ccccccCcccCchhccceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHH
Confidence 9999999999999999997541 234567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCCcccchhhhHHHHHHHHhhCCccc
Q 003269 451 QTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMF 530 (835)
Q Consensus 451 ~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~lLv~l~esr~~I~~lLd~L~~~~ 530 (835)
++|+++|+.||++.|++|||||||++||||||+.++++++|+||+|++|+|+|++++|||+++||++.|+++||+|+++|
T Consensus 184 ~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~ 263 (751)
T 3eh1_A 184 QSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMF 263 (751)
T ss_dssp HHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTS
T ss_pred HHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhh
Confidence 99999999999988899999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCcccccCCccccccCCCCcHHHHHHHHHHhhcC
Q 003269 531 QDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQ 610 (835)
Q Consensus 531 ~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~g 610 (835)
.+++++++|+|+||++|+.+|+..||||++|++|+||+|+|+|+.||+. +..+++||+++++++++|||+||++|+++|
T Consensus 264 ~~~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~~r~~~-~~~~~~ke~~~~~~a~~fY~~la~~~~~~~ 342 (751)
T 3eh1_A 264 TNTRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQSREDP-NQRSSTKVVQHLGPATDFYKKLALDCSGQQ 342 (751)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCCCCCCS-CGGGGSSSCTTCSCSCSHHHHHHHHHHHTT
T ss_pred cCCCCCccchHHHHHHHHHHhhcCCCEEEEEecCCCCCCCCcccccccc-ccCCCchhhhhhcchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999763 345667888999999999999999999999
Q ss_pred eEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcch---hHHHHHHHHHhhcccccccceEEEEEeCCCceEeeeec
Q 003269 611 IAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTT---HGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHG 687 (835)
Q Consensus 611 IsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~---d~~~L~~dL~r~l~r~~g~~a~mrVR~S~Gl~V~~~~G 687 (835)
|+||+|+++.+|+|+++|+.|+++|||++++|++|+.+. +.++|.+||+|.+++++||+|+||||||+||+|+++||
T Consensus 343 i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G 422 (751)
T 3eh1_A 343 TAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHG 422 (751)
T ss_dssp EEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEES
T ss_pred ceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccceEEEEEecCCeEEEEeeC
Confidence 999999999999999999999999999999999998764 46799999999999999999999999999999999999
Q ss_pred CcccCCCCceEeccCCCCCcEEEEEeeccccCCCceeEEEEEEEEEecCCcEEEEEEcCcccccCCHHHHHHhcChhHHH
Q 003269 688 NFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIV 767 (835)
Q Consensus 688 nf~~rs~~~~~l~~id~d~Sia~~f~~d~~l~~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lpvts~l~~vf~s~D~eai~ 767 (835)
||+.+++++|+++++|+|++|+|+|+|++++.+...+|||+|++||+.+|||||||||++++|++++.++|+++|+||++
T Consensus 423 ~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~ 502 (751)
T 3eh1_A 423 NFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAI 502 (751)
T ss_dssp SSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEEECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHH
T ss_pred CeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEeeecCCCCEEEEEEEecccccCCHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999997778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCceecCcccchhhHHHhc
Q 003269 768 SVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGSRMIYPESLKFLPFRLHD 830 (835)
Q Consensus 768 ~llaK~a~~~~~~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~gqLiLPeslKlLPly~l~ 830 (835)
++|+|+|+++++++++.|+|++|+++|+++|++||| +|++. +++||+|||+||+||+||++
T Consensus 503 ~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~-~~~~~-~~~~l~lpe~lkllP~~~~~ 563 (751)
T 3eh1_A 503 CLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGS-TVSNL-QHSALMAPSSLKLFPLYVLA 563 (751)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCC------CCEEEGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-hcccC-CCccccCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 88654 56799999999999999975
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=1.4e-123 Score=1130.67 Aligned_cols=563 Identities=34% Similarity=0.609 Sum_probs=504.9
Q ss_pred ccccccc-ccccCCCCC-----CCCCCCCCCCC-CCCCCCCCCCCCCCCCC-----ccccc----cCCCCcEeeecCccC
Q 003269 262 VIQGLAE-DFSSLSFGS-----IPGSIEPGIDL-KSLPRPLDGDVEPSSLA-----ETYPL----NCHSRYLRLTTSAIP 325 (835)
Q Consensus 262 ~~~~~~~-~~~~~~~~~-----~~~~~dp~~~~-~~ip~p~~~~~~pp~~~-----~~~~~----N~sP~yiR~T~~~iP 325 (835)
++++++. +|+.|+++. ..+.+.+ +|- .++|.++....+||+.. +.|++ ||+|+|||+|||+||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~ppp~~~~~~~~~~~~~d~gn~~p~~vR~T~n~iP 190 (926)
T 1m2v_B 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYP-IDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVP 190 (926)
T ss_dssp ---------------------CCCCCCCE-EETTTSCSCCCSGGGSCCCCCCCCGGGSSSCSSSSSCCTTTEEESBSSEE
T ss_pred cccccccccccccCcCccccccCccccee-eehhccCCCCCcccCCCCCCCCCCCCcccccccCCCCCCCceecccccCC
Confidence 3445555 666666652 2344444 232 44566665544555444 77765 999999999999999
Q ss_pred CCHHHHhhcCCCeEEEEccCCCCCCCCC-------------CCcceeecccceEeeCCceEEEcCCCCCCCCCccccccc
Q 003269 326 NSQSLVSRWHLPLGAVVCPLAEPPEGNL-------------FICRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHL 392 (835)
Q Consensus 326 ~t~~l~~~~~LPlgivv~Pfa~~~~~e~-------------~rCrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~l 392 (835)
.|++++++++|||||+|+||++..+.++ +||||||||||+|+++|++|+||||++.|++|.+|+ +
T Consensus 191 ~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~~Y~--~ 268 (926)
T 1m2v_B 191 KNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMD--Q 268 (926)
T ss_dssp SBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGGT--T
T ss_pred CCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCCCCCCccCCccCEecCceEEeCCCCEEEccCCCCCCCCchhhc--c
Confidence 9999999999999999999998643221 889999999999999999999999999999999999 6
Q ss_pred CcccccCCCCCCCCccccceEEeccccccCCCCCCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEE
Q 003269 393 DATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFI 471 (835)
Q Consensus 393 d~~g~R~D~~~rPEL~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiI 471 (835)
+++|+|.|+++||||+++||||++++||++|++.+|+||||||||.+++++|+++++|++|+++|+.|++ +++++||||
T Consensus 269 ~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlI 348 (926)
T 1m2v_B 269 SDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISIL 348 (926)
T ss_dssp TSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEE
T ss_pred ccccCccccccCccccCceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999999986 458999999
Q ss_pred EEcCeEEEEecCCCCC-------CCceeeecccccccCCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHH
Q 003269 472 TFDSTIHFYNMKSSLT-------QPQMMVISDLDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPAL 544 (835)
Q Consensus 472 TFds~V~fynl~~~~~-------~pqmlVvsDldd~f~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL 544 (835)
|||++||||+|+.++. +++|+||+|+||+|+|++++||++++||++.|+++||+|+.+|.++++.++|+|+||
T Consensus 349 TFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL 428 (926)
T 1m2v_B 349 CVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPAL 428 (926)
T ss_dssp EESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHH
T ss_pred EECCEEEEEecCCcccCCcccccchhhccccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHH
Confidence 9999999999998765 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCCCCcccccccCCcccccCCccccc-cCCCCcHHHHHHHHHHhhcCeEEEEEEecCCcc
Q 003269 545 KAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHS-LRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYT 623 (835)
Q Consensus 545 ~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~gt~~e~~-l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~v 623 (835)
++|+.+|+.+||||++|++|+||+|+|+|+.|++ .+.++++||++ |++++++||++||++|+++||+||||+++.+|+
T Consensus 429 ~aA~~lL~~~GGrI~~F~sg~Pt~GpG~l~~re~-~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~v 507 (926)
T 1m2v_B 429 KSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNE-SGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYM 507 (926)
T ss_dssp HHHHHHHTTTCEEEEEEESSCCCSSTTCCCCCCC-----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCC
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCCCCccccccc-ccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCc
Confidence 9999999999999999999999999999999976 45778888887 999999999999999999999999999999999
Q ss_pred ChhhhhhhccccccEEEEeCCCCcch--hHHHHHHHHHhhcccccccceEEEEEeCCCceEeeeecCcccCCCCceEecc
Q 003269 624 DIASLGTLAKYTGGQVYYYPSFQSTT--HGERLRHELSRDLTRETAWEAVMRIRCGKGVRFTNYHGNFMLRSTDLLALPA 701 (835)
Q Consensus 624 diatL~~L~~~TGG~v~~y~~F~~~~--d~~~L~~dL~r~l~r~~g~~a~mrVR~S~Gl~V~~~~Gnf~~rs~~~~~l~~ 701 (835)
||++|+.|++.|||.+++|++|+.++ |..+|.+||.+.|++++||+|+||||||+||+|+++||||+.+++++|++++
T Consensus 508 dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~s~~~~l~~ 587 (926)
T 1m2v_B 508 DVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFST 587 (926)
T ss_dssp CHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSSTTEEEEEE
T ss_pred ChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHHHHhhhhhceeEEEEEEeCCCcEEEEeecCccccCcCceEeec
Confidence 99999999999999999999999874 7789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEeeccccCCCceeEEEEEEEEEecCCcEEEEEEcCcccccCCHHHHHHhcChhHHHHHHHHHHHHHHhcC
Q 003269 702 VDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSDMYQQADTGAIVSVFSRLAIEKTLSH 781 (835)
Q Consensus 702 id~d~Sia~~f~~d~~l~~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lpvts~l~~vf~s~D~eai~~llaK~a~~~~~~~ 781 (835)
+|+|++|+|+|++++++. .+.+|||+|++||+.+|+|||||||++++|++++.+||+++|+||++++|+|+|+++++++
T Consensus 588 l~~d~s~av~f~~~~~l~-~~~~~~Q~allYT~~~G~RRiRV~T~~l~vt~~l~~v~~s~Dqea~~~llar~av~~~~~~ 666 (926)
T 1m2v_B 588 MPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNS 666 (926)
T ss_dssp ECSSCCEEEEEEECSBCC-SSEEEEEEEEEEEETTTEEEEEEEEEEEEEESCHHHHHHTBCHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEeecccccCCHHHHHHhcCHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999985 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC--ceecCcccchhhHHHhc
Q 003269 782 KLEDARNAVQLRLVKALKEYRNLYAVQHRLGS--RMIYPESLKFLPFRLHD 830 (835)
Q Consensus 782 ~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~g--qLiLPeslKlLPly~l~ 830 (835)
++.|+|++|+++|+++|++||| +|++.++.+ +|+|||+||+||+||++
T Consensus 667 ~~~d~r~~L~~~li~il~~Yrk-~~~~~~~~~~~sl~Lp~~lkllP~~~~~ 716 (926)
T 1m2v_B 667 SLDDARVLINKSVQDILATYKK-EIVVSNTAGGAPLRLCANLRMFPLLMHS 716 (926)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH-HTCCCTTSSSSCCEEEGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhh-hcccccCCCCcccccCHHHHHHHHHHHH
Confidence 9999999999999999999999 898766655 59999999999999863
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=3.1e-121 Score=1103.83 Aligned_cols=521 Identities=35% Similarity=0.632 Sum_probs=466.8
Q ss_pred Cccccc----cCCCCcEeeecCccCCCHHHHhhcCCCeEEEEccCCCCCCCCC-------------CCcceeecccceEe
Q 003269 305 AETYPL----NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEGNL-------------FICRTYVNPYVTFT 367 (835)
Q Consensus 305 ~~~~~~----N~sP~yiR~T~~~iP~t~~l~~~~~LPlgivv~Pfa~~~~~e~-------------~rCrAYiNPf~~f~ 367 (835)
++.|++ ||+|+|||+|||+||.|++++++++|||||+|+||+...+.++ ++|||||||||+|+
T Consensus 50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~~~pvRC~~CrayiNPf~~~~ 129 (810)
T 1pcx_A 50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFI 129 (810)
T ss_dssp GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECSCCCCBCTTTCCBCCTTCEEE
T ss_pred CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCCCCCCccCCccCEecCceEEe
Confidence 356654 9999999999999999999999999999999999998643221 88999999999999
Q ss_pred eCCceEEEcCCCCCCCCCcccccccCcccccCCCCCCCCccccceEEeccccccCCCCCCCEEEEEEecchhHHhhchHH
Q 003269 368 DAGRKWRCNICALLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLE 447 (835)
Q Consensus 368 ~~G~~W~Cn~C~~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~ 447 (835)
++|++|+||||++.|++|.+|+ ++++|+|.|+++||||+++||||++++||++|++.+|+||||||||.+++++|+++
T Consensus 130 ~~g~~W~C~~C~~~N~~P~~y~--~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~ 207 (810)
T 1pcx_A 130 EQGRRWRCNFCRLANDVPMQMD--QSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA 207 (810)
T ss_dssp TTTTEEECTTTCCEEECCGGGG--C-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHH
T ss_pred CCCCEEEccCCCCcCCCchhhc--cccccCccccccCccccCceEEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHH
Confidence 9999999999999999999999 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCCCC-------CCceeeecccccccCCCCCCcccchhhhHHHH
Q 003269 448 VVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLT-------QPQMMVISDLDDIFVPLPDDLLVNLSESRSVV 519 (835)
Q Consensus 448 ~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~~~-------~pqmlVvsDldd~f~Pl~~~lLv~l~esr~~I 519 (835)
++|++|+++|+.||+ +++++|||||||++||||+++.++. +++|+|++|++|+|+|++++||++++||++.|
T Consensus 208 ~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~~i 287 (810)
T 1pcx_A 208 TTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNI 287 (810)
T ss_dssp HHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccccCCCcccccccHHHHHHHH
Confidence 999999999999986 4589999999999999999987655 78999999999999999999999999999999
Q ss_pred HHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccccCCcccccCCccccc-cCCCCcHH
Q 003269 520 DTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLGVGCLKLRGDDLRVYGTDKEHS-LRIPEDPF 598 (835)
Q Consensus 520 ~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~GpG~L~~re~~~r~~gt~~e~~-l~~pa~~F 598 (835)
+++||+|+.+|.++++.++|+|+||++|+.+|+..||||++|++|+||+|+|+|+.|++ .+.++++||+. +++++++|
T Consensus 288 ~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~GGrI~~F~sg~pt~GpG~l~~r~~-~~~~~~~ke~~~l~~~a~~f 366 (810)
T 1pcx_A 288 ETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNE-SGVVNTSKETAQLLSCQDSF 366 (810)
T ss_dssp HHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC---------------------CCH
T ss_pred HHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhcCCEEEEEecCCCCCCCCccccccc-ccccCcccchhhhcccchHH
Confidence 99999999999999999999999999999999999999999999999999999999976 45778888887 99999999
Q ss_pred HHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcch--hHHHHHHHHHhhcccccccceEEEEEe
Q 003269 599 YKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTT--HGERLRHELSRDLTRETAWEAVMRIRC 676 (835)
Q Consensus 599 Yk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~--d~~~L~~dL~r~l~r~~g~~a~mrVR~ 676 (835)
|++||++|+++||+||||+++.+|+||++|+.|++.|||.+++|++|+.++ |..+|.+|+.+.|++++||+|+|||||
T Consensus 367 Y~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~~~l~~~~gf~a~mrVR~ 446 (810)
T 1pcx_A 367 YKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARG 446 (810)
T ss_dssp HHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_pred HHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHHHHhhhhcceeEEEEEEc
Confidence 999999999999999999999999999999999999999999999999874 778999999999999999999999999
Q ss_pred CCCceEeeeecCcccCCCCceEeccCCCCCcEEEEEeeccccCCCceeEEEEEEEEEecCCcEEEEEEcCcccccCCHHH
Q 003269 677 GKGVRFTNYHGNFMLRSTDLLALPAVDCDKAYAMQLSLEETLLTTQTVYFQVALLYTASCGERRIRVHTLAAPVVSNLSD 756 (835)
Q Consensus 677 S~Gl~V~~~~Gnf~~rs~~~~~l~~id~d~Sia~~f~~d~~l~~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lpvts~l~~ 756 (835)
|+||+|+++||||+.+++++|+++++++|++|+|+|++++++. .+.+|||+|++||+.+|+|||||||++++|++++.+
T Consensus 447 S~gl~v~~~~G~~~~~~~~~~~l~~~~~d~s~~v~f~~~~~l~-~~~~~~Q~allYt~~~G~RRiRV~T~~~~vt~~~~~ 525 (810)
T 1pcx_A 447 STGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAE 525 (810)
T ss_dssp CTTEEEEEEESSSBCSSSSEEEESSCCSSCCEEEEEEECSCCC-SSEEEEEEEEEEECTTSCEEEEEEEEEEEEESCHHH
T ss_pred CCCeEEEEeecCccccCcCceEeecCCCCCEEEEEEEeccCCC-CCcEEEEEEEEEEcCCCCEEEEEEecCccccCCHHH
Confidence 9999999999999999999999999999999999999999985 578999999999999999999999999999999999
Q ss_pred HHHhcChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC--ceecCcccchhhHHHhc
Q 003269 757 MYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKALKEYRNLYAVQHRLGS--RMIYPESLKFLPFRLHD 830 (835)
Q Consensus 757 vf~s~D~eai~~llaK~a~~~~~~~~l~d~R~~l~~~lv~iL~~YRk~~~a~~~~~g--qLiLPeslKlLPly~l~ 830 (835)
+|+++|+||++++|+|+|+++++++++.|+|++|+++|+++|++||| +|++.++.+ +|+|||+||+||+|+++
T Consensus 526 v~~~~Dqea~~~llar~av~~~~~~~~~d~r~~l~~~li~il~~Yrk-~~~~~~~~~~~~l~lp~~lkllP~~~~~ 600 (810)
T 1pcx_A 526 VYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKK-EIVVSNTAGGAPLRLCANLRMFPLLMHS 600 (810)
T ss_dssp HHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH-HCC----CCSSCCEEEGGGTTHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhh-hcccccCCCCcccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 888766554 59999999999999863
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=2.8e-106 Score=970.28 Aligned_cols=495 Identities=20% Similarity=0.332 Sum_probs=437.7
Q ss_pred ccCCCCcEeeecCccCCCHHHHhhcCCCeEEEEccCCCCCCC-----CC---CC--cceeecccceEeeCCceEEEcCCC
Q 003269 310 LNCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEG-----NL---FI--CRTYVNPYVTFTDAGRKWRCNICA 379 (835)
Q Consensus 310 ~N~sP~yiR~T~~~iP~t~~l~~~~~LPlgivv~Pfa~~~~~-----e~---~r--CrAYiNPf~~f~~~G~~W~Cn~C~ 379 (835)
.||+++|||+|||+||.|++++++++|||||+|+||++..+. +. ++ |||||||||+|+++|++|+||||+
T Consensus 5 ~~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 5 TNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp HHHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTTCCEECSCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred cccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCCCCCcCCCCCCccCCCCCCeEECCceEEeCCCCEEEcccCC
Confidence 389999999999999999999999999999999999975321 11 78 999999999999999999999999
Q ss_pred CCCCCCcccccccCcccccCCCCCCCCccccceEEeccccccCCCCCCCEEEEEEecchhHHhhchHHHHHHHHHHHHhc
Q 003269 380 LLNDVPGDYFAHLDATGRRIDIDQRPELTKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDE 459 (835)
Q Consensus 380 ~~N~vP~~Y~~~ld~~g~R~D~~~rPEL~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~ 459 (835)
+.|++|.+|+ +++++ +.||||+++||||++++ +++.+|+||||||||.++++ ++++|++|+.+|+.
T Consensus 85 ~~N~~P~~y~-~~~~~------~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~ 150 (768)
T 1m2o_A 85 SRNHLPPQYT-NLSQE------NMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESIITSLSL 150 (768)
T ss_dssp CCCBCCGGGC-C---C------CCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHT
T ss_pred CCCCCChHHc-cCCcc------cCChhhccCCEEEECCC----CCCCCCEEEEEEECCcCHHH---HHHHHHHHHHHHHh
Confidence 9999999998 66643 57899999999999997 47899999999999999975 89999999999999
Q ss_pred CCCCCCceEEEEEEcCeEEEEecCCCC---------------CCCceee--ecc-----c-----ccccCCC---CCCcc
Q 003269 460 LPGFPRTQIGFITFDSTIHFYNMKSSL---------------TQPQMMV--ISD-----L-----DDIFVPL---PDDLL 509 (835)
Q Consensus 460 Lp~~~rt~VGiITFds~V~fynl~~~~---------------~~pqmlV--vsD-----l-----dd~f~Pl---~~~lL 509 (835)
||++ ++|||||||++||||+++.++ ++.++++ ++| + +|.|.|+ +++||
T Consensus 151 Lp~~--~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~l 228 (768)
T 1m2o_A 151 LPPN--ALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFF 228 (768)
T ss_dssp SCTT--CEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGS
T ss_pred CCCC--CEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHHHhhccccccCCccccccccccccccCCcccee
Confidence 9975 899999999999999999764 2333333 333 2 6767776 68999
Q ss_pred cchhhhHHHHHHHHhhCCc---cccCCCCcccchHHHHHHHHHHHH----hcCCEEEEEecCCCCCCcccccccCCc--c
Q 003269 510 VNLSESRSVVDTLLDSLPS---MFQDNMNVESAFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGVGCLKLRGDD--L 580 (835)
Q Consensus 510 v~l~esr~~I~~lLd~L~~---~~~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~sg~Pt~GpG~L~~re~~--~ 580 (835)
++++||++.|+++||+|+. ++.+++++++|+|+||++|+.+|+ .+||||++|++|+||+|||+|+.|++. .
T Consensus 229 v~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~ 308 (768)
T 1m2o_A 229 LPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPL 308 (768)
T ss_dssp EEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHHHHHHCTTSCCEEEEEESSCCCSSSSCCSCSBTTSCC
T ss_pred eeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHHHhhccCCCCcEEEEEeCCCCCCCCcccccccccccc
Confidence 9999999999999999988 788889999999999999999999 589999999999999999999998652 2
Q ss_pred ccc-CCcc-ccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcchhHHHHHHHH
Q 003269 581 RVY-GTDK-EHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHEL 658 (835)
Q Consensus 581 r~~-gt~~-e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~d~~~L~~dL 658 (835)
|.| +++| ++++++++++||++||++|+++||+||||+++.+|+||++|+.|++.|||++|+|++|+.+ +|.++|
T Consensus 309 rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~----~~~~~l 384 (768)
T 1m2o_A 309 RSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTA----IFKQSY 384 (768)
T ss_dssp CCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSH----HHHHHH
T ss_pred ccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchH----HHHHHH
Confidence 332 3344 4789999999999999999999999999999999999999999999999999999999874 577788
Q ss_pred Hhhccc------ccccceEEEEEeCCCceEeeeecCcc----------------cCCCCceEeccCCCCCcEEEEEeecc
Q 003269 659 SRDLTR------ETAWEAVMRIRCGKGVRFTNYHGNFM----------------LRSTDLLALPAVDCDKAYAMQLSLEE 716 (835)
Q Consensus 659 ~r~l~r------~~g~~a~mrVR~S~Gl~V~~~~Gnf~----------------~rs~~~~~l~~id~d~Sia~~f~~d~ 716 (835)
+|.+++ ++||+|+||||||+||+|+++||||+ .+++++|+++++|+|++|+|+|++++
T Consensus 385 ~r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~ 464 (768)
T 1m2o_A 385 LRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIAN 464 (768)
T ss_dssp HHTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECC
T ss_pred HHHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEecc
Confidence 888887 79999999999999999999999988 46788999999999999999999998
Q ss_pred ccC-------------CCceeEEEEEEEEEecCCcEEEEEEcCcccccCC-HHHHHHhcChhHHHHHHHHHHHHHHhcCC
Q 003269 717 TLL-------------TTQTVYFQVALLYTASCGERRIRVHTLAAPVVSN-LSDMYQQADTGAIVSVFSRLAIEKTLSHK 782 (835)
Q Consensus 717 ~l~-------------~~~~~~IQ~AllYT~~~GeRRIRV~Tl~lpvts~-l~~vf~s~D~eai~~llaK~a~~~~~~~~ 782 (835)
++. +...+|||+|++||+.+|||||||||++++|+++ +.++|+++|+||++++|+|+|++++++++
T Consensus 465 ~~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rriRV~T~~~~~t~~~~~~v~~~~Dqea~~~llar~av~~~~~~~ 544 (768)
T 1m2o_A 465 TAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDD 544 (768)
T ss_dssp C-----------------CEEEEEEEEEEEETTTEEEEEEEEEEEEEECTTCHHHHHTBCHHHHHHHHHHHHHHHTTSSC
T ss_pred ccccccccccccccccCCCcEEEEEEEEEEcCCCCEEEEEEeecccccCccHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 763 4578999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHhhhhhccCCCCCceecCcccchhhHHHhc
Q 003269 783 LEDARNAVQLRLVKA---LKEYRNLYAVQHRLGSRMIYPESLKFLPFRLHD 830 (835)
Q Consensus 783 l~d~R~~l~~~lv~i---L~~YRk~~~a~~~~~gqLiLPeslKlLPly~l~ 830 (835)
+.|+|+||+++|+++ |+.||| .|. ++|+|||+||+||+|+++
T Consensus 545 ~~d~r~~l~~~li~l~~~~~~Yrk-~~~-----~~l~lp~~lk~lP~~~~~ 589 (768)
T 1m2o_A 545 GADVIRWLDRTLIKLCQKYADYNK-DDP-----QSFRLAPNFSLYPQFTYY 589 (768)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBCCT-TCG-----GGCBCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCc-----cccccCHHHHHHHHHHHH
Confidence 999999999999988 668888 663 479999999999999974
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=2.2e-106 Score=970.65 Aligned_cols=497 Identities=20% Similarity=0.312 Sum_probs=434.8
Q ss_pred cCCCCcEeeecCccCCCHHHHhhcCCCeEEEEccCCCCCCC-----CC---CC--cceeecccceEeeCCceEEEcCCCC
Q 003269 311 NCHSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEPPEG-----NL---FI--CRTYVNPYVTFTDAGRKWRCNICAL 380 (835)
Q Consensus 311 N~sP~yiR~T~~~iP~t~~l~~~~~LPlgivv~Pfa~~~~~-----e~---~r--CrAYiNPf~~f~~~G~~W~Cn~C~~ 380 (835)
||+|+|||+|||+||.|++++++++|||||+|+||++..+. +. ++ |||||||||+|+++|++|+||||++
T Consensus 15 n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~ 94 (769)
T 2nut_A 15 NEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 94 (769)
T ss_dssp HHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCC
T ss_pred cCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeCCCCEEEccCCCC
Confidence 89999999999999999999999999999999999975321 11 78 9999999999999999999999999
Q ss_pred CCCCCcccccccCcccccCCCCCCCCc--cccceEEeccccccCCCCCCCEEEEEEecchhHHhhchHHHHHHHHHHHHh
Q 003269 381 LNDVPGDYFAHLDATGRRIDIDQRPEL--TKGSVEFVAPTEYMVRPPMPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLD 458 (835)
Q Consensus 381 ~N~vP~~Y~~~ld~~g~R~D~~~rPEL--~~gtVEfvap~eY~~r~p~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~ 458 (835)
.|++|.+|+ +++.. ++|||| +++||||+++++| +.+|+||||||||.++++ ++++|++|+.+|+
T Consensus 95 ~N~~P~~Y~-~~~~~------~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~---l~~l~~si~~~L~ 160 (769)
T 2nut_A 95 RNQFPPSYA-GISEL------NQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED---LQALKESMQMSLS 160 (769)
T ss_dssp EEECCGGGT-TCBTT------BCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH---HHHHHHHHHHHHT
T ss_pred CCCCChHHc-cCCcc------cCChhhcCCCCcEEEEccCCC----CCCCEEEEEEECCccHHH---HHHHHHHHHHHHH
Confidence 999999998 66643 578999 8999999999998 789999999999999986 7899999999999
Q ss_pred cCCCCCCceEEEEEEcCeEEEEecCCCC---------------CCCc-eeeecc----c-----cccc-CCCCCCcccch
Q 003269 459 ELPGFPRTQIGFITFDSTIHFYNMKSSL---------------TQPQ-MMVISD----L-----DDIF-VPLPDDLLVNL 512 (835)
Q Consensus 459 ~Lp~~~rt~VGiITFds~V~fynl~~~~---------------~~pq-mlVvsD----l-----dd~f-~Pl~~~lLv~l 512 (835)
.||++ ++|||||||++||||+++.++ ++++ |++++| + +|+| .|+ ++||+++
T Consensus 161 ~Lp~~--~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~-~~~lv~~ 237 (769)
T 2nut_A 161 LLPPT--ALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPS-NRFLQPV 237 (769)
T ss_dssp TSCTT--CEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------------CC-CSSSEEH
T ss_pred hCCCC--ceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccccccCCCcc-cceeeeH
Confidence 99975 899999999999999999865 3444 455775 3 7888 555 8999999
Q ss_pred hhhHHHHHHHHhhCCc---cccCCCCcccchHHHHHHHHHHHH----hcCCEEEEEecCCCCCCcccccccCCc--ccc-
Q 003269 513 SESRSVVDTLLDSLPS---MFQDNMNVESAFGPALKAAFMVMS----RLGGKLLIFQNSLPSLGVGCLKLRGDD--LRV- 582 (835)
Q Consensus 513 ~esr~~I~~lLd~L~~---~~~~~~~~~~alG~AL~aA~~lL~----~~GGkIivF~sg~Pt~GpG~L~~re~~--~r~- 582 (835)
+||++.|+++||+|+. ++.++++.++|+|+||++|+.+|+ .+||||++|++|+||+|||+|+.|++. .|.
T Consensus 238 ~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~ 317 (769)
T 2nut_A 238 QKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSW 317 (769)
T ss_dssp HHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSCSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCCCCcCcccccccccc
Confidence 9999999999999988 557888999999999999999999 689999999999999999999998642 233
Q ss_pred cCCccc-cccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcchhHHHHHHHHHhh
Q 003269 583 YGTDKE-HSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRD 661 (835)
Q Consensus 583 ~gt~~e-~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~d~~~L~~dL~r~ 661 (835)
++++|| +++++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||++|+|++|+.+++.++|.++|.+.
T Consensus 318 ~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~~~ 397 (769)
T 2nut_A 318 HDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKD 397 (769)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTCBC
T ss_pred cccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHhhh
Confidence 335555 7899999999999999999999999999999999999999999999999999999999877666666666555
Q ss_pred ccc--ccccceEEEEEeCCCceEeeeecCcc---------------cCCCCceEeccCCCCCcEEEEEeeccc----cCC
Q 003269 662 LTR--ETAWEAVMRIRCGKGVRFTNYHGNFM---------------LRSTDLLALPAVDCDKAYAMQLSLEET----LLT 720 (835)
Q Consensus 662 l~r--~~g~~a~mrVR~S~Gl~V~~~~Gnf~---------------~rs~~~~~l~~id~d~Sia~~f~~d~~----l~~ 720 (835)
+++ ++||+|+||||||+||+|+++||||+ ++++++|+++++|+|++|+|+|+++++ +.+
T Consensus 398 ~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~l~~ 477 (769)
T 2nut_A 398 MHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQ 477 (769)
T ss_dssp TTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC---------
T ss_pred cccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCccccccCC
Confidence 544 79999999999999999999999986 578899999999999999999999986 445
Q ss_pred CceeEEEEEEEEEecCCcEEEEEEcCcccccCCH---HHHHHhcChhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 003269 721 TQTVYFQVALLYTASCGERRIRVHTLAAPVVSNL---SDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQLRLVKA 797 (835)
Q Consensus 721 ~~~~~IQ~AllYT~~~GeRRIRV~Tl~lpvts~l---~~vf~s~D~eai~~llaK~a~~~~~~~~l~d~R~~l~~~lv~i 797 (835)
...+|||+|++||+.+|||||||||++++|++++ .++|+++|+||++++|+|+|+++++++++.|+|+||+++|+++
T Consensus 478 ~~~~~~Q~a~lYt~~~G~rRiRV~T~~~~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~ld~~li~l 557 (769)
T 2nut_A 478 GGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRL 557 (769)
T ss_dssp -CCEEEEEEEEEEETTSCEEEEEEEEEECBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEEECCCCCEEEEEEeecccccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999988 5999999999999999999999999999999999999999876
Q ss_pred ---HHHHhhhhhccCCCCCceecCcccchhhHHHhc
Q 003269 798 ---LKEYRNLYAVQHRLGSRMIYPESLKFLPFRLHD 830 (835)
Q Consensus 798 ---L~~YRk~~~a~~~~~gqLiLPeslKlLPly~l~ 830 (835)
|++||| .|. ++|+|||+||+||+|+++
T Consensus 558 ~~~~~~Yrk-~~~-----~sl~lp~~lkllP~~~~~ 587 (769)
T 2nut_A 558 CQKFGEYHK-DDP-----SSFRFSETFSLYPQFMFH 587 (769)
T ss_dssp HHHHCBCCT-TCG-----GGCBCCTTTTTHHHHHHH
T ss_pred HHHHHHHhC-cCc-----ccccccHHHHHHHHHHHH
Confidence 678888 663 579999999999999964
No 8
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.37 E-value=7.8e-10 Score=126.37 Aligned_cols=303 Identities=13% Similarity=0.072 Sum_probs=193.5
Q ss_pred CCEEEEEEecchhHHh-hchHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEe-cCCCCCCCceeeecccccccCCC
Q 003269 427 PPLYFFLIDVSISAIR-SGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYN-MKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 427 pp~yvFvIDvS~~av~-sG~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fyn-l~~~~~~pqmlVvsDldd~f~Pl 504 (835)
+-.++||||+|.++-. ..-++.++++++..|+.|..+ .+||||+|++..+.+- +..
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~--drv~lV~Fs~~a~~~~p~t~-------------------- 134 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDG--AFFAVVAGTEGARVVYPTGG-------------------- 134 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTT--CEEEEEEESSSEEEEESSSS--------------------
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCC--CEEEEEEEcCceEEEecCCc--------------------
Confidence 3569999999999851 124788999999999999854 6899999998876542 111
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcC---CEEEEEecCCCCCCcccccccCCccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG---GKLLIFQNSLPSLGVGCLKLRGDDLR 581 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~G---GkIivF~sg~Pt~GpG~L~~re~~~r 581 (835)
++..--.+.++.+.+.|+.|.. ...+.++.||+.|..+|+... ..||++++|.++.+.
T Consensus 135 --~l~~~~~~~~~~l~~~I~~L~~------~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~~----------- 195 (464)
T 4fx5_A 135 --QLLRADYQSRAAAKEAVGRLHA------NGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESET----------- 195 (464)
T ss_dssp --SCEECSHHHHHHHHHHHHTCCC------CSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTSC-----------
T ss_pred --ccccCCHHHHHHHHHHHHcCCC------CCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCCC-----------
Confidence 0100113456777788888863 346789999999999997643 368888888765321
Q ss_pred ccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcchhHHHHHHHHHhh
Q 003269 582 VYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELSRD 661 (835)
Q Consensus 582 ~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~d~~~L~~dL~r~ 661 (835)
..-... +.+..+.+|.|+.|.++. ..|...|..|+..|||..++..++.. ....+.++...
T Consensus 196 --------------~~~l~~-~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~v~d~~~---L~~~f~~i~~~ 256 (464)
T 4fx5_A 196 --------------PADLAR-AIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGIIRDPAT---LAEDFREMTAK 256 (464)
T ss_dssp --------------HHHHHH-HHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEEESSGGG---HHHHHHHHHHH
T ss_pred --------------hHHHHH-HHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHhCCCEEEEcCCHHH---HHHHHHHHHHH
Confidence 001111 223346788888888754 47888999999999999998876532 22333333344
Q ss_pred cccccccceEEEEEeCCCceEeeeec------Ccc-cC------CCCceEeccCCCCCc--EEEEEeeccccCCCcee-E
Q 003269 662 LTRETAWEAVMRIRCGKGVRFTNYHG------NFM-LR------STDLLALPAVDCDKA--YAMQLSLEETLLTTQTV-Y 725 (835)
Q Consensus 662 l~r~~g~~a~mrVR~S~Gl~V~~~~G------nf~-~r------s~~~~~l~~id~d~S--ia~~f~~d~~l~~~~~~-~ 725 (835)
+.....-++.++|++..|+.+..+.. .+. .+ ....+.++.+ .+.+ |.++|++...- .+... .
T Consensus 257 ~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~lv~l~v~~~~-~g~~~~~ 334 (464)
T 4fx5_A 257 SMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYHICVEVEPGN-IGQEKLA 334 (464)
T ss_dssp HHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEEEEEECCCCC-TTCEEEE
T ss_pred hhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeEEEEEEEEcCCCC-CCceeEE
Confidence 45567889999999999988876521 111 11 1345778888 7655 55555554432 23333 3
Q ss_pred EEEEEEEEecCCcEEEEEEcCcccccCCH-------HHHHHhcChhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003269 726 FQVALLYTASCGERRIRVHTLAAPVVSNL-------SDMYQQADTGAIVSVFSRLAIEKTLSHKLEDARNAVQL 792 (835)
Q Consensus 726 IQ~AllYT~~~GeRRIRV~Tl~lpvts~l-------~~vf~s~D~eai~~llaK~a~~~~~~~~l~d~R~~l~~ 792 (835)
.++.+.|.+..|++.+.=..+.+.++.+. .+|.+...+..+ +-..+++...+..+++..+.+.|..
T Consensus 335 ~~v~~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~V~~~~~~~~~-a~~~~~a~~~~~~gd~~~A~~~L~~ 407 (464)
T 4fx5_A 335 GRVQLVAKDAGGATLLGEGKIRAVWTEDTDLSTRINGRVAHYTGQAEM-AAAIQEGLDAQAAGDLDTATARLGR 407 (464)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEECSCHHHHSCCCHHHHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEEEEcCCCccccccccceEEEEEccccccCCCCHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 79999999988874322223444444443 234444433322 2233455666667787777776654
No 9
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.20 E-value=2.9e-12 Score=105.52 Aligned_cols=40 Identities=28% Similarity=0.646 Sum_probs=36.5
Q ss_pred CC--cceeecccceEeeCCceEEEcCCCCCCCCCcccccccCc
Q 003269 354 FI--CRTYVNPYVTFTDAGRKWRCNICALLNDVPGDYFAHLDA 394 (835)
Q Consensus 354 ~r--CrAYiNPf~~f~~~G~~W~Cn~C~~~N~vP~~Y~~~ld~ 394 (835)
+| |||||||||+|+++|++|+||||+..|++|.+|+. +++
T Consensus 13 ~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~-is~ 54 (59)
T 2yrc_A 13 SRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAG-ISE 54 (59)
T ss_dssp SCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSS-CHH
T ss_pred CCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhc-cCc
Confidence 66 99999999999999999999999999999999983 443
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=6.1e-08 Score=98.03 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=125.6
Q ss_pred CCCEEEEEEecchhHHhh----chHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeeccccccc
Q 003269 426 MPPLYFFLIDVSISAIRS----GMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIF 501 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~s----G~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f 501 (835)
.+..++||||+|.++-.. ..++.+++.++..++.+++ .+||||+|++..+..-
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~---~~v~lv~F~~~~~~~~-------------------- 66 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDN---DKVGMIVFAGDAFTQL-------------------- 66 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSS---CEEEEEEESSSEEEEE--------------------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCC---CeEEEEEECCCceEeC--------------------
Confidence 556799999999998543 2588899999999999873 6999999997654321
Q ss_pred CCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc---CCEEEEEecCCCCCCcccccccCC
Q 003269 502 VPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL---GGKLLIFQNSLPSLGVGCLKLRGD 578 (835)
Q Consensus 502 ~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~---GGkIivF~sg~Pt~GpG~L~~re~ 578 (835)
++...++.+..+|+.|..... ....+.++.||+.|...++.. ...|++++.|.++.|
T Consensus 67 ---------~~~~~~~~~~~~l~~l~~~~~--~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~--------- 126 (218)
T 3ibs_A 67 ---------PITSDYISAKMFLESISPSLI--SKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG--------- 126 (218)
T ss_dssp ---------EEESCHHHHHHHHHTCCGGGC--CSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS---------
T ss_pred ---------CCCCCHHHHHHHHHhcCcccC--CCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC---------
Confidence 112235567778888864321 235678999999999888653 346777777765543
Q ss_pred cccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCC------------------------ccChhhhhhhccc
Q 003269 579 DLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDK------------------------YTDIASLGTLAKY 634 (835)
Q Consensus 579 ~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~------------------------~vdiatL~~L~~~ 634 (835)
-+.+++..+.+.+|.|.++.++.. ..|...|..|++.
T Consensus 127 -------------------~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~ 187 (218)
T 3ibs_A 127 -------------------GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKD 187 (218)
T ss_dssp -------------------CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHH
T ss_pred -------------------cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHh
Confidence 125677788899999999988764 5778899999999
Q ss_pred cccEEEEeCCCCcchhHHHHHHHHHhhc
Q 003269 635 TGGQVYYYPSFQSTTHGERLRHELSRDL 662 (835)
Q Consensus 635 TGG~v~~y~~F~~~~d~~~L~~dL~r~l 662 (835)
|||..++..+- ..+.+.+.++|.+..
T Consensus 188 ~gG~~~~~~~~--~~~~~~~~~~i~~l~ 213 (218)
T 3ibs_A 188 GKGIYVRVDNS--NSAQKAISQEISKMA 213 (218)
T ss_dssp TEEEEEEECSS--SHHHHHHHHHHHHHH
T ss_pred cCCEEEECCCC--hHHHHHHHHHHHHhh
Confidence 99998887642 234566777776543
No 11
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.57 E-value=1.7e-06 Score=84.91 Aligned_cols=154 Identities=13% Similarity=0.151 Sum_probs=103.1
Q ss_pred CEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCC
Q 003269 428 PLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDD 507 (835)
Q Consensus 428 p~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~ 507 (835)
.-++||||+|.++-.. ...+++.+++.++.+-. ++.+||||+|++..+..-
T Consensus 8 ~div~vlD~SgSM~~~--~~~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~-------------------------- 58 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHH--WNEIYYFVEQLAHKFIS-PQLRMSFIVFSTRGTTLM-------------------------- 58 (185)
T ss_dssp EEEEEEEECSGGGGGG--HHHHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE--------------------------
T ss_pred eeEEEEEeCCCChhhh--HHHHHHHHHHHHHHhCC-CCcEEEEEEEecCceEEe--------------------------
Confidence 4579999999988542 56677777777777633 468999999988765421
Q ss_pred cccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHH--hcCC-----EEEEEecCCCCCCcccccccCCcc
Q 003269 508 LLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMS--RLGG-----KLLIFQNSLPSLGVGCLKLRGDDL 580 (835)
Q Consensus 508 lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~--~~GG-----kIivF~sg~Pt~GpG~L~~re~~~ 580 (835)
++.+.++.+...|+.|..++ ....+.+|.||+.|...|. ..++ .|++++.|.++.+..
T Consensus 59 ---~l~~~~~~~~~~i~~l~~~~---~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~~~--------- 123 (185)
T 3n2n_F 59 ---KLTEDREQIRQGLEELQKVL---PGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLF--------- 123 (185)
T ss_dssp ---EEECCHHHHHHHHHHHHTCC---CCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHHHH---------
T ss_pred ---ccCCCHHHHHHHHHHHhhhc---CCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCCcc---------
Confidence 11123555666677765432 2346789999999998773 2333 567777765432110
Q ss_pred cccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCC
Q 003269 581 RVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPS 644 (835)
Q Consensus 581 r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~ 644 (835)
.-.++.+.++.+.||.|..+.++ ..|...|..++.. +|.+|+..+
T Consensus 124 ----------------~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 124 ----------------FYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp ----------------HHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEHHH
T ss_pred ----------------cchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEecc
Confidence 01246778888888777666665 6788999999965 577777653
No 12
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.55 E-value=2.8e-06 Score=83.14 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=100.7
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPD 506 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~ 506 (835)
+.-++||||+|.++-.. . ...++.+++.+..+-+ ++.+||||+|++..+..-
T Consensus 6 ~~dvv~vlD~SgSM~~~-~-~~~~~~~~~~~~~~~~-~~~~v~lv~f~~~~~~~~------------------------- 57 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANN-W-IEIYNFVQQLAERFVS-PEMRLSFIVFSSQATIIL------------------------- 57 (182)
T ss_dssp CEEEEEEEECSGGGGGG-H-HHHHHHHHHHHHHCCC-TTEEEEEEEESSSEEEEE-------------------------
T ss_pred ceeEEEEEECCCCcccC-H-HHHHHHHHHHHHHhcC-CCceEEEEEeCCCceEEE-------------------------
Confidence 45689999999988542 2 2245566666666533 468999999998755321
Q ss_pred CcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc-----CCEEEEEecCCCCCCcccccccCCccc
Q 003269 507 DLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL-----GGKLLIFQNSLPSLGVGCLKLRGDDLR 581 (835)
Q Consensus 507 ~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re~~~r 581 (835)
++...++.+..+|+.|.... ....+.++.||+.|...++.. ...|++++.|.++.+
T Consensus 58 ----~~~~~~~~~~~~l~~l~~~~---~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~------------ 118 (182)
T 1shu_X 58 ----PLTGDRGKISKGLEDLKRVS---PVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL------------ 118 (182)
T ss_dssp ----EEECCHHHHHHHHHHHHTCC---CCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT------------
T ss_pred ----CCCCCHHHHHHHHHhcccCC---CCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC------------
Confidence 00112344555666664321 234678999999999999653 356777777764311
Q ss_pred ccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeC
Q 003269 582 VYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYP 643 (835)
Q Consensus 582 ~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~ 643 (835)
......+.++.+.+.||.|..+.++ ..|...|..++..+||. |+..
T Consensus 119 -------------~~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~-~~~~ 164 (182)
T 1shu_X 119 -------------VPSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQV-FPVK 164 (182)
T ss_dssp -------------HHHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGE-EESS
T ss_pred -------------CchhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCce-EEcc
Confidence 0123356777888889887777765 56888999999999774 4443
No 13
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.53 E-value=1.8e-06 Score=85.59 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=108.7
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
+.-.+||||+|.++-.+ -++.+++.++..++.+.. ..+.+||||+|++.++.. .+..
T Consensus 5 ~~div~vlD~SgSm~~~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~-------------------- 63 (189)
T 1atz_A 5 PLDVILLLDGSSSFPAS-YFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNV-------------------- 63 (189)
T ss_dssp CEEEEEEEECSSSSCHH-HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTC--------------------
T ss_pred ceeEEEEEeCCCCCChh-hHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCC--------------------
Confidence 45689999999987432 467888999999988863 245899999999876532 1110
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc--C-----CE-EEEEecCCCCCCccccccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL--G-----GK-LLIFQNSLPSLGVGCLKLR 576 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~--G-----Gk-IivF~sg~Pt~GpG~L~~r 576 (835)
...++.+...|+.|.. ....+.+|.||+.|...+... | -| |+++++|..+-
T Consensus 64 --------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~-------- 122 (189)
T 1atz_A 64 --------VPEKAHLLSLVDVMQR-----EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD-------- 122 (189)
T ss_dssp --------CCCHHHHHHHHHTCCC-----CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS--------
T ss_pred --------CCCHHHHHHHHHhCcC-----CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc--------
Confidence 1235566677888764 135689999999999988642 1 25 66677764320
Q ss_pred CCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcccccc-EEEEeCCCC
Q 003269 577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGG-QVYYYPSFQ 646 (835)
Q Consensus 577 e~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG-~v~~y~~F~ 646 (835)
+ ..+.++++.+.||.|..+.++. ..|...|..|+..++| .++...+|.
T Consensus 123 -~--------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~ 171 (189)
T 1atz_A 123 -S--------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGDSNVVKLQRIE 171 (189)
T ss_dssp -C--------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGGGGCEEESSTT
T ss_pred -h--------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHHHHCCCcccCEEEecChh
Confidence 0 1466777888898877777654 4688899999999875 577777664
No 14
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.52 E-value=1.2e-06 Score=92.99 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=111.3
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVP 503 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~P 503 (835)
.+.-+|||||+|.++-...+++.+++.++..++.|.. ....+||||+|++.++.. .+....
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~----------------- 82 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDA----------------- 82 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSC-----------------
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccC-----------------
Confidence 3556899999999886555668899999999999874 235899999999876432 222110
Q ss_pred CCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcCC------EEEEEecCCCCCCcccccccC
Q 003269 504 LPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGG------KLLIFQNSLPSLGVGCLKLRG 577 (835)
Q Consensus 504 l~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~GG------kIivF~sg~Pt~GpG~L~~re 577 (835)
...++.|.+.|+.|.... .....+.+|.||+.|...|...++ .||++++|.++-
T Consensus 83 ---------~~~~~~l~~~i~~l~~~~--~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d--------- 142 (281)
T 4hqf_A 83 ---------SKNKEKALIIIKSLLSTN--LPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS--------- 142 (281)
T ss_dssp ---------SSCHHHHHHHHHHHHHTT--GGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC---------
T ss_pred ---------ccCHHHHHHHHHHHhhcc--CCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC---------
Confidence 011334444555554211 113467899999999888876543 377777776541
Q ss_pred CcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccc--ccc--EEEEeCCCCc
Q 003269 578 DDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKY--TGG--QVYYYPSFQS 647 (835)
Q Consensus 578 ~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~--TGG--~v~~y~~F~~ 647 (835)
..-..+.++++.+.||.|-.+.++.+ +|-..|..|+.. +|| .+|+..+|+.
T Consensus 143 ------------------~~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 143 ------------------IQDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPSDGKCNLYADSAWEN 197 (281)
T ss_dssp ------------------HHHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSSSSCCTTEEEECGGG
T ss_pred ------------------cHHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCCCCCCceEEecchhh
Confidence 01234567778888877776666543 788888999876 676 7888888854
No 15
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.51 E-value=3.5e-06 Score=85.06 Aligned_cols=169 Identities=12% Similarity=0.185 Sum_probs=107.9
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
.+.-++||||+|.++-.. -++.+++.++..++.|.. ..+.+||||+|++.++..- ++.
T Consensus 14 ~~~div~vlD~SgSM~~~-~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~------ 72 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGAS-NFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVS------ 72 (223)
T ss_dssp -CEEEEEEEECSTTTCHH-HHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE--------------CTT------
T ss_pred CceeEEEEEeCCCCCchH-HHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee--------------ccc------
Confidence 456789999999987543 367778888887776543 2347999999998765321 000
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcC-----------CEEEEEecCCCCCCcccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLG-----------GKLLIFQNSLPSLGVGCL 573 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~G-----------GkIivF~sg~Pt~GpG~L 573 (835)
......++.+...|+.|..... .....+.++.||+.|...|...+ -.||+++.|.++.|.-..
T Consensus 73 -----~~~~~~~~~~~~~i~~l~~~~~-~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~ 146 (223)
T 1q0p_A 73 -----EADSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPI 146 (223)
T ss_dssp -----SGGGGCHHHHHHHHHTCCTTSC-SCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTH
T ss_pred -----cCCCCCHHHHHHHHHhcccccc-cCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChH
Confidence 0112335667778888864311 12457889999999999997421 247888888877652000
Q ss_pred cccCCcccccCCccccccCCCCcHHHHHHH---------HHHhhcCeEEEEEEecCCccChhhhhhhcccccc--EEEEe
Q 003269 574 KLRGDDLRVYGTDKEHSLRIPEDPFYKQMA---------ADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGG--QVYYY 642 (835)
Q Consensus 574 ~~re~~~r~~gt~~e~~l~~pa~~FYk~La---------~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG--~v~~y 642 (835)
...+.+. +.+.+.+|.|..+.++. .+|...|..|+..||| .+|..
T Consensus 147 -----------------------~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~~~L~~iA~~~~G~~~~~~~ 202 (223)
T 1q0p_A 147 -----------------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKV 202 (223)
T ss_dssp -----------------------HHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCHHHHHHHSCCCTTCCCEEET
T ss_pred -----------------------HHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCHHHHHHHhcCCCCCceEEEc
Confidence 0111111 22234566666555543 5788999999999999 67776
Q ss_pred CCC
Q 003269 643 PSF 645 (835)
Q Consensus 643 ~~F 645 (835)
.++
T Consensus 203 ~~~ 205 (223)
T 1q0p_A 203 KDM 205 (223)
T ss_dssp TC-
T ss_pred CCH
Confidence 654
No 16
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.49 E-value=3e-06 Score=85.40 Aligned_cols=174 Identities=15% Similarity=0.188 Sum_probs=112.6
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~-~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
+.-.+||||+|.+.-.. -++.+++.++..++.|.-+ .+.+||||+|++..+.. .+. +.
T Consensus 13 ~~divfvlD~SgSm~~~-~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~------------~~------- 72 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEA-EFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK------------DR------- 72 (202)
T ss_dssp CEEEEEEEECBTTSCHH-HHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT------------CC-------
T ss_pred cccEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC------------CC-------
Confidence 45689999999986432 3678899999999988622 24899999999876542 111 00
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHH-HHhc----C-CEEEEEecCCCCCCcccccccCC
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMV-MSRL----G-GKLLIFQNSLPSLGVGCLKLRGD 578 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~l-L~~~----G-GkIivF~sg~Pt~GpG~L~~re~ 578 (835)
..++.+.+.|++|... ....+.+|.||+.|..- ++.. . -.||+++.|.++.+.
T Consensus 73 ---------~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~~-------- 131 (202)
T 1ijb_A 73 ---------KRPSELRRIASQVKYA----GSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRM-------- 131 (202)
T ss_dssp ---------CCHHHHHHHHHTCCCC----CBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGGG--------
T ss_pred ---------CCHHHHHHHHHhCcCC----CCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCccc--------
Confidence 1245566778888642 11237899999999744 3321 1 246777777653210
Q ss_pred cccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccc-cccEEEEeCCCCcchhHHHHHHH
Q 003269 579 DLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKY-TGGQVYYYPSFQSTTHGERLRHE 657 (835)
Q Consensus 579 ~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~-TGG~v~~y~~F~~~~d~~~L~~d 657 (835)
.+-..+.++++.+.||.|-.+.++. ..|..+|..|+.. ++|.+|+..+|+. -.++.++
T Consensus 132 -----------------~~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~~~~~~~~~~~---L~~~~~~ 190 (202)
T 1ijb_A 132 -----------------SRNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPENKAFVLSSVDE---LEQQRDE 190 (202)
T ss_dssp -----------------CTTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTCCCEEESSGGG---HHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcccEEEeCCHHH---HHHHHHH
Confidence 0113456677778888666666543 4788899999985 6789998887754 2345555
Q ss_pred HHhhc
Q 003269 658 LSRDL 662 (835)
Q Consensus 658 L~r~l 662 (835)
|.+.+
T Consensus 191 i~~~i 195 (202)
T 1ijb_A 191 IVSYL 195 (202)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 17
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.4e-07 Score=94.73 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=104.8
Q ss_pred EEEEEEecchhHHhh----chHHHHHHHHHHHHhcCCC-CCCceEEEEEEcC-eEEEEecCCCCCCCceeeecccccccC
Q 003269 429 LYFFLIDVSISAIRS----GMLEVVAQTIKSCLDELPG-FPRTQIGFITFDS-TIHFYNMKSSLTQPQMMVISDLDDIFV 502 (835)
Q Consensus 429 ~yvFvIDvS~~av~s----G~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds-~V~fynl~~~~~~pqmlVvsDldd~f~ 502 (835)
+.|||||+|.++... ..+++++++++..++.+.+ ++..+||||+|.. ..++
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~v----------------------- 61 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV----------------------- 61 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEE-----------------------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCccee-----------------------
Confidence 469999999988432 2577788887777765421 2346999999953 1111
Q ss_pred CCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc---C--CEEEEEecCCCCCCcccccccC
Q 003269 503 PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL---G--GKLLIFQNSLPSLGVGCLKLRG 577 (835)
Q Consensus 503 Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~---G--GkIivF~sg~Pt~GpG~L~~re 577 (835)
++++...+..|...|+.|.. ...+.++.||+.|..+|++. + -|||+|+++.-+
T Consensus 62 ------l~plT~D~~~il~aL~~l~~------~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~---------- 119 (268)
T 4b4t_W 62 ------LSTFTAEFGKILAGLHDTQI------EGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPIS---------- 119 (268)
T ss_dssp ------EEEEESCHHHHHHHHTTCCC------CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCS----------
T ss_pred ------ccCCcchHHHHHHHhhhcCc------CCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCC----------
Confidence 12223345667778888852 35678999999999999863 2 379999886411
Q ss_pred CcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcccccc
Q 003269 578 DDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGG 637 (835)
Q Consensus 578 ~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG 637 (835)
...+-..++++++.+++|.||++.|..+..+-..|..|++..+|
T Consensus 120 ----------------~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 120 ----------------DSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNN 163 (268)
T ss_dssp ----------------SCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCS
T ss_pred ----------------CCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcC
Confidence 12234578999999999999999999876677778888776655
No 18
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.46 E-value=2.5e-06 Score=90.03 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=107.4
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLP 505 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~ 505 (835)
+.-++||||+|.++-...+.+.+++.++..++.|.- ....+||||+|++.++..- ++.
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~--------------~l~------- 76 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELI--------------RLG------- 76 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEE--------------CTT-------
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEE--------------ecC-------
Confidence 456899999999875444435788889999988862 1358999999998754321 010
Q ss_pred CCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcCC------EEEEEecCCCCCCcccccccCCc
Q 003269 506 DDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGG------KLLIFQNSLPSLGVGCLKLRGDD 579 (835)
Q Consensus 506 ~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~GG------kIivF~sg~Pt~GpG~L~~re~~ 579 (835)
+ . .+..++.+...|+.|...+ .....+.+|.||+.|..+++..|+ .||++++|.++-
T Consensus 77 ~-~---~~~~~~~~~~~i~~l~~~~--~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d----------- 139 (266)
T 4hqo_A 77 S-G---QSIDKRQALSKVTELRKTY--TPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS----------- 139 (266)
T ss_dssp S-H---HHHCHHHHHHHHHHHHHHC--CCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC-----------
T ss_pred C-C---CccCHHHHHHHHHHhhhcc--CCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC-----------
Confidence 0 0 0112455556666664211 123467899999999999987543 467777766540
Q ss_pred ccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcccc--cc--EEEEeCCC
Q 003269 580 LRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYT--GG--QVYYYPSF 645 (835)
Q Consensus 580 ~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~T--GG--~v~~y~~F 645 (835)
..-..+.++++.+.||.|-.+.++. ..|-..|..|+... +| .+|++.+|
T Consensus 140 ----------------~~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~g~~~~~~~~d~ 192 (266)
T 4hqo_A 140 ----------------KYRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPREPNCKFYSYADW 192 (266)
T ss_dssp ----------------HHHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTCSSCTTEECSCH
T ss_pred ----------------chHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCCCCCCeEEecCH
Confidence 0123567788888897777666654 56777788888774 43 77877765
No 19
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.41 E-value=4.8e-06 Score=84.98 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=112.2
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCC-CCCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELP-GFPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp-~~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
+.-.+||||+|.++- -++.+++.++..++.|. ...+.+||||+|++.++.. .+ .|.
T Consensus 22 ~~div~vlD~SgSM~---~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l------------~~~------- 79 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIY---PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL------------NKY------- 79 (223)
T ss_dssp CEEEEEEEECSTTCC---CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECT------------TTC-------
T ss_pred cceEEEEEECCCChh---hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEec------------CCC-------
Confidence 456899999999874 26788999999998875 2245899999999876532 11 010
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHH-HHhc-C------CEEEEEecCCCCCCccccccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMV-MSRL-G------GKLLIFQNSLPSLGVGCLKLR 576 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~l-L~~~-G------GkIivF~sg~Pt~GpG~L~~r 576 (835)
..++.+.+.|+.|... ....+.++.||+.|.+. ++.. | ..||++++|.++.|.
T Consensus 80 ---------~~~~~~~~~i~~l~~~----gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~------ 140 (223)
T 2b2x_A 80 ---------SSTEEVLVAANKIVQR----GGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY------ 140 (223)
T ss_dssp ---------CSHHHHHHHHTTCCCC----CCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG------
T ss_pred ---------CCHHHHHHHHHhhhcc----CCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc------
Confidence 1123344455555421 11247899999999986 3321 1 247777877654321
Q ss_pred CCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCcc--------Chhhhhhhccc-cccEEEEeCCCCc
Q 003269 577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYT--------DIASLGTLAKY-TGGQVYYYPSFQS 647 (835)
Q Consensus 577 e~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~v--------diatL~~L~~~-TGG~v~~y~~F~~ 647 (835)
-+++.++++.+.||.|..+.+..+.- +...|..|+.. |||.+|+..+++.
T Consensus 141 ---------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~ 199 (223)
T 2b2x_A 141 ---------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 199 (223)
T ss_dssp ---------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTG
T ss_pred ---------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCCHHH
Confidence 13567778888998888777754321 04789999998 9999999887654
Q ss_pred chhHHHHHHHHHhhc
Q 003269 648 TTHGERLRHELSRDL 662 (835)
Q Consensus 648 ~~d~~~L~~dL~r~l 662 (835)
- .++.++|.+.+
T Consensus 200 L---~~i~~~i~~~i 211 (223)
T 2b2x_A 200 L---VTIVKALGERI 211 (223)
T ss_dssp G---GGGHHHHHTTT
T ss_pred H---HHHHHHHHHhh
Confidence 2 34555565554
No 20
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.38 E-value=9.5e-06 Score=92.77 Aligned_cols=170 Identities=14% Similarity=0.156 Sum_probs=109.2
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
.+.-+|||||+|.++-.. -++.+++.|+..++.|.. ..+.+||||+|++..+..- + +
T Consensus 8 ~~~divfvlD~SgSM~~~-~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~--------------~-------l 65 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSEN-DFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLM--------------S-------V 65 (509)
T ss_dssp SEEEEEEEEECSTTSCHH-HHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEE--------------C-------T
T ss_pred CCeeEEEEEeCCCccchh-hHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeE--------------e-------c
Confidence 455689999999987543 357788888888888731 1348999999998665421 0 0
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc----C----------CEEEEEecCCCCCCc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL----G----------GKLLIFQNSLPSLGV 570 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~----G----------GkIivF~sg~Pt~Gp 570 (835)
.......++.+.+.|+.|...... ....+.++.||+.|.++|+.. + ..||++++|..+.|.
T Consensus 66 ----~~~~~~~~~~~~~~l~~l~~~~~~-~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~ 140 (509)
T 2odp_A 66 ----LNDNSRDMTEVISSLENANYKDHE-NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG 140 (509)
T ss_dssp ----TSGGGGCHHHHHHHHHTCCGGGGT-TCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS
T ss_pred ----cCCCCCCHHHHHHHHHhcccccCC-CCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC
Confidence 001122456677788888643211 135688999999999999542 1 347888888877551
Q ss_pred ccccccCCcccccCCccccccCCCCcHHHHHHHHH-----HhhcCeEEEEEEecCCccChhhhhhhccccccE--EEEeC
Q 003269 571 GCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAAD-----LTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQ--VYYYP 643 (835)
Q Consensus 571 G~L~~re~~~r~~gt~~e~~l~~pa~~FYk~La~~-----~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~--v~~y~ 643 (835)
... ..-+.+.+. ..+.+|.|..+.+..+..|..+|..|+..++|+ +|+.+
T Consensus 141 -~~~----------------------~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~ 197 (509)
T 2odp_A 141 -SPK----------------------TAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQ 197 (509)
T ss_dssp -CTH----------------------HHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEES
T ss_pred -Chh----------------------HHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEec
Confidence 100 001111111 115666666666655548999999999999998 66655
Q ss_pred CC
Q 003269 644 SF 645 (835)
Q Consensus 644 ~F 645 (835)
++
T Consensus 198 ~~ 199 (509)
T 2odp_A 198 DT 199 (509)
T ss_dssp SH
T ss_pred CH
Confidence 43
No 21
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.37 E-value=1e-05 Score=81.07 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=112.4
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
+.-.+||||+|.++- -++.+++.+++.++.+.. ..+.+||||+|++..+.. .+. |.
T Consensus 6 ~~div~vlD~SgSm~---~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~------------~~------- 63 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY---PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN------------TY------- 63 (200)
T ss_dssp CEEEEEEEECCTTCC---CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT------------TC-------
T ss_pred cccEEEEEECCCCcc---cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC------------Cc-------
Confidence 456899999999864 268889999999988862 235899999999876531 111 10
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHH-HHhc-CC------EEEEEecCCCCCCccccccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMV-MSRL-GG------KLLIFQNSLPSLGVGCLKLR 576 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~l-L~~~-GG------kIivF~sg~Pt~GpG~L~~r 576 (835)
..++.+.+.|+.|... ....+.+|.||+.|.+. ++.. |. .|++++.|.++.+
T Consensus 64 ---------~~~~~~~~~i~~l~~~----~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~------- 123 (200)
T 1v7p_C 64 ---------KTKEEMIVATSQTSQY----GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG------- 123 (200)
T ss_dssp ---------SSHHHHHHHHHHCCCC----CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG-------
T ss_pred ---------CCHHHHHHHHHhhhcc----CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc-------
Confidence 1244455566776521 11247899999999985 4321 22 3777888765411
Q ss_pred CCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecC----CccC----hhhhhhhccccccE-EEEeCCCCc
Q 003269 577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSD----KYTD----IASLGTLAKYTGGQ-VYYYPSFQS 647 (835)
Q Consensus 577 e~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~----~~vd----iatL~~L~~~TGG~-v~~y~~F~~ 647 (835)
.-+++.++++.+.||.|..+.+.. ..+| ..+|..++..|||. +|...+|+.
T Consensus 124 --------------------~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~ 183 (200)
T 1v7p_C 124 --------------------SMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAA 183 (200)
T ss_dssp --------------------GGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGG
T ss_pred --------------------ccHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCHHH
Confidence 113567778888998888777732 3455 57899999999886 566666643
Q ss_pred chhHHHHHHHHHhhc
Q 003269 648 TTHGERLRHELSRDL 662 (835)
Q Consensus 648 ~~d~~~L~~dL~r~l 662 (835)
-.++.++|.+.+
T Consensus 184 ---l~~i~~~i~~~i 195 (200)
T 1v7p_C 184 ---LLEKAGTLGEQI 195 (200)
T ss_dssp ---GHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhhh
Confidence 345666665544
No 22
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.36 E-value=2.7e-06 Score=84.49 Aligned_cols=173 Identities=13% Similarity=0.165 Sum_probs=111.3
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
.+.-++||||+|.++-.. -++.+++.++..++.|. ..+.+||||+|++.++.. .+ .+.
T Consensus 8 ~~~div~vlD~SgSM~~~-~~~~~~~~~~~~~~~l~-~~~~~v~lv~f~~~~~~~~~~------------~~~------- 66 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSR-NFATMMNFVRAVISQFQ-RPSTQFSLMQFSNKFQTHFTF------------EEF------- 66 (198)
T ss_dssp CCEEEEEEEECCTTSCHH-HHHHHHHHHHHHHTTSC-TTTEEEEEEEESSSEEEEECH------------HHH-------
T ss_pred CCeeEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcC-CCCcEEEEEEeCCCccEEEec------------Ccc-------
Confidence 345689999999987543 35678888999998884 345899999999875432 11 000
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHH-HHHHhc-------CCEEEEEecCCCCCCccccccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAF-MVMSRL-------GGKLLIFQNSLPSLGVGCLKLR 576 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~-~lL~~~-------GGkIivF~sg~Pt~GpG~L~~r 576 (835)
..++.+...|+.|.. ....+.++.||+.|. .+++.. ...||++++|.++.+.
T Consensus 67 ---------~~~~~~~~~i~~l~~-----~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~------ 126 (198)
T 1n3y_A 67 ---------RRSSNPLSLLASVHQ-----LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS------ 126 (198)
T ss_dssp ---------HHCSSGGGGGTTCCC-----CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS------
T ss_pred ---------CCHHHHHHHHhcCcC-----CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc------
Confidence 001112223344432 234688999999999 444431 2357888888765211
Q ss_pred CCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCc---cChhhhhhhccccccEE-EEeCCCCcchhHH
Q 003269 577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY---TDIASLGTLAKYTGGQV-YYYPSFQSTTHGE 652 (835)
Q Consensus 577 e~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~---vdiatL~~L~~~TGG~v-~~y~~F~~~~d~~ 652 (835)
.-+.+.+.++.+.||.|..+.+..+. .|...|..|+..|||.. |...++.. -.
T Consensus 127 --------------------~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~---l~ 183 (198)
T 1n3y_A 127 --------------------LDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA---LK 183 (198)
T ss_dssp --------------------SCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGG---GG
T ss_pred --------------------ccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHH---HH
Confidence 01355677888999988888877654 37899999999999974 66666543 23
Q ss_pred HHHHHHHhhc
Q 003269 653 RLRHELSRDL 662 (835)
Q Consensus 653 ~L~~dL~r~l 662 (835)
++.++|.+.+
T Consensus 184 ~~~~~i~~~i 193 (198)
T 1n3y_A 184 DIQNQLKEKI 193 (198)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHhhe
Confidence 4445555443
No 23
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.35 E-value=1.8e-06 Score=86.00 Aligned_cols=173 Identities=14% Similarity=0.242 Sum_probs=110.4
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPD 506 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~ 506 (835)
+.-.+||||+|.++-.. -++.+++.++..++.|. ..+.+||||+|++.++..- ++.+
T Consensus 5 ~~div~vlD~SgSm~~~-~~~~~k~~~~~~~~~l~-~~~~~v~vv~f~~~~~~~~--------------~l~~------- 61 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPH-DFRRMKEFVSTVMEQLK-KSKTLFSLMQYSEEFRIHF--------------TFKE------- 61 (194)
T ss_dssp CEEEEEEEECCTTSCHH-HHHHHHHHHHHHHHHHC-CTTEEEEEEEESSSEEEEE--------------CHHH-------
T ss_pred CeeEEEEEeCCCCCCHH-HHHHHHHHHHHHHHhcC-CCCeEEEEEEecCCceEEE--------------ecCC-------
Confidence 45689999999987443 35678888888888775 2358999999998764310 0000
Q ss_pred CcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHH-Hh-cCC------EEEEEecCCCCCCcccccccCC
Q 003269 507 DLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVM-SR-LGG------KLLIFQNSLPSLGVGCLKLRGD 578 (835)
Q Consensus 507 ~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL-~~-~GG------kIivF~sg~Pt~GpG~L~~re~ 578 (835)
...++.+...|+.|.. ....+.+|.||+.|.+.| .. .|+ .|++++.|.++ | +
T Consensus 62 ------~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~--------d 121 (194)
T 1mf7_A 62 ------FQNNPNPRSLVKPITQ-----LLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-G--------D 121 (194)
T ss_dssp ------HHHSCCHHHHHTTCCC-----CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-S--------C
T ss_pred ------cCCHHHHHHHHHhCcC-----CCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-C--------C
Confidence 0112234456677653 134678999999999644 32 232 37888888766 1 0
Q ss_pred cccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCc---cChhhhhhhcccc-ccEEEEeCCCCcchhHHHH
Q 003269 579 DLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY---TDIASLGTLAKYT-GGQVYYYPSFQSTTHGERL 654 (835)
Q Consensus 579 ~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~---vdiatL~~L~~~T-GG~v~~y~~F~~~~d~~~L 654 (835)
.. -+++.++++.+.||.|..+.++.+. .+..+|..++..+ +|.+|+..+|+.- ..+
T Consensus 122 ~~-----------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l---~~~ 181 (194)
T 1mf7_A 122 PL-----------------GYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEAL---KTI 181 (194)
T ss_dssp SS-----------------CGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGG---GGG
T ss_pred ch-----------------hhHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHHH---HHH
Confidence 00 0123456677888888777776543 1478999999986 5888888876542 345
Q ss_pred HHHHHhhc
Q 003269 655 RHELSRDL 662 (835)
Q Consensus 655 ~~dL~r~l 662 (835)
.++|.+.+
T Consensus 182 ~~~i~~~i 189 (194)
T 1mf7_A 182 QNQLREKI 189 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 24
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.32 E-value=2.5e-08 Score=98.91 Aligned_cols=178 Identities=15% Similarity=0.210 Sum_probs=106.1
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcC-CCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDEL-PGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~L-p~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
.+-.++||||+|.++-. ..++.+++.++..++.+ .. +.+||||+|++... +..+|
T Consensus 4 ~~~~vv~vlD~SgSM~~-~~~~~~k~~~~~~~~~~~~~--~~~v~lv~f~~~~~--------------------~~~~~- 59 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV-ARLSEAKGAVELLLGRAYAA--RDHVSLITFRGTAA--------------------QVLLQ- 59 (189)
T ss_dssp SCCEEEEEEECCTTSCC---CHHHHHHHHHHHHHSCTT--TSCCCEEEESBSCC--------------------CBCTT-
T ss_pred CCeEEEEEEECCCCCCc-hHHHHHHHHHHHHHHHhcCC--CcEEEEEEECCCCc--------------------eEecC-
Confidence 45678999999998732 24678888888888877 43 37899999985210 01111
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc-----CCEEEEEecCCCCCCcccccccCCc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL-----GGKLLIFQNSLPSLGVGCLKLRGDD 579 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re~~ 579 (835)
+...++.+.+.|+.|.. ...+.++.||+.|..+++.. ...|++++.|.++.|...-..+++
T Consensus 60 -------~~~~~~~~~~~i~~l~~------~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~- 125 (189)
T 2x31_A 60 -------PSRSLTQTKRQLQGLPG------GGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANREL- 125 (189)
T ss_dssp -------TCSCHHHHHHHHHHCCC------CBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGG-
T ss_pred -------CCCCHHHHHHHHhcCCC------CCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccc-
Confidence 11234556677777752 34678999999999999763 247888889999877531000000
Q ss_pred ccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccEEEEeCCCCcchhHHHHHHHHH
Q 003269 580 LRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFQSTTHGERLRHELS 659 (835)
Q Consensus 580 ~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~v~~y~~F~~~~d~~~L~~dL~ 659 (835)
+..+ + ++++.++.+.||.|..+.+... |...|..|+..|||..++.++ .+.+.|.+.+.
T Consensus 126 ---~~~~----~--------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~~~~~----~~~~~~~~~~~ 184 (189)
T 2x31_A 126 ---AGEQ----A--------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYIALPR----ATAHKMADVLG 184 (189)
T ss_dssp ---GTCC----C--------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESSTTTHH----HHHHHHHHHHH
T ss_pred ---hhHH----H--------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEEECCC----cchHHHHHHHH
Confidence 0000 0 0011122334443333333332 677899999999998655432 33455666555
Q ss_pred hhc
Q 003269 660 RDL 662 (835)
Q Consensus 660 r~l 662 (835)
+.+
T Consensus 185 ~~~ 187 (189)
T 2x31_A 185 AAL 187 (189)
T ss_dssp HCC
T ss_pred Hhh
Confidence 543
No 25
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.32 E-value=1.1e-05 Score=91.84 Aligned_cols=175 Identities=13% Similarity=0.182 Sum_probs=106.6
Q ss_pred EEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCC
Q 003269 429 LYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDD 507 (835)
Q Consensus 429 ~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~ 507 (835)
-+|||||+|.++-.+ -++.+++.|+..++.|.. ..+.+||||+|++..+..- ++.+
T Consensus 3 div~vlD~SgSM~~~-~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~--------------~~~~-------- 59 (497)
T 1rrk_A 3 NIYLVLDGSDSIGAS-NFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE-------- 59 (497)
T ss_dssp EEEEEEECSTTTCHH-HHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTS--------
T ss_pred eEEEEEECCCCcchh-hHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee--------------cccc--------
Confidence 479999999987442 467788888888876542 2347999999997655321 1110
Q ss_pred cccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHh-----------cCCEEEEEecCCCCCCccccccc
Q 003269 508 LLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR-----------LGGKLLIFQNSLPSLGVGCLKLR 576 (835)
Q Consensus 508 lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~-----------~GGkIivF~sg~Pt~GpG~L~~r 576 (835)
.....++.+.+.|+.|..... .....+.++.||+.|..+|.. ....||++++|..+.|.......
T Consensus 60 ---~~~~~~~~~~~~l~~l~~~~~-~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~ 135 (497)
T 1rrk_A 60 ---ADSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVI 135 (497)
T ss_dssp ---GGGGCHHHHHHHHHHCCGGGS-CCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHH
T ss_pred ---ccccCHHHHHHHHHhCcCccc-cccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHH
Confidence 123346677788888864211 123568899999999999932 22468889999888764211100
Q ss_pred CCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcccccc--EEEEeCCC
Q 003269 577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGG--QVYYYPSF 645 (835)
Q Consensus 577 e~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG--~v~~y~~F 645 (835)
+. .+.. ..+ .+.+..+.+.+|.|..+.+. +.+|...|..|+..+|| .+|+.+++
T Consensus 136 ~~-~~~~-----~~~--------~~~~~~~~~~~i~v~~igvG-~~~~~~~L~~iA~~~~g~~~~~~~~~~ 191 (497)
T 1rrk_A 136 DE-IRDL-----LYI--------GKDRKNPREDYLDVYVFGVG-PLVNQVNINALASKKDNEQHVCKVKDM 191 (497)
T ss_dssp HH-HHHH-----TTC--------SSCC-CCCGGGEEEEEEECS-SSCCHHHHHHHSCCCTTCCCEEETTCH
T ss_pred HH-HHHH-----hhh--------hcccccchhcCeeEEEecCC-CccCHHHHHHHhcCCCCcceEEEeCCH
Confidence 00 0000 000 00011123346666555554 34788999999999999 77776644
No 26
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.27 E-value=1e-05 Score=81.79 Aligned_cols=172 Identities=13% Similarity=0.121 Sum_probs=112.1
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCC-CCCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELP-GFPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp-~~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
+.-.+||||+|.++- -++.+++.+++.++.|. ...+.+||||+|++.++.. .+ .|
T Consensus 7 ~~div~vlD~SgSm~---~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l------------~~-------- 63 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY---PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL------------NK-------- 63 (213)
T ss_dssp CEEEEEEEECCTTCC---CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECT------------TT--------
T ss_pred CccEEEEEECCCChh---hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEec------------cc--------
Confidence 456899999999874 26788888999888875 2245899999999876532 11 01
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHH-Hh-cC------CEEEEEecCCCCCCccccccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVM-SR-LG------GKLLIFQNSLPSLGVGCLKLR 576 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL-~~-~G------GkIivF~sg~Pt~GpG~L~~r 576 (835)
+ ..++.+.+.|+.|... ....+.+|.||+.|...| +. .| ..|++++.|.++.|
T Consensus 64 ---~-----~~~~~~~~~i~~l~~~----~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------- 124 (213)
T 1pt6_A 64 ---Y-----SSTEEVLVAAKKIVQR----GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN------- 124 (213)
T ss_dssp ---C-----SSHHHHHHHHHTCCCC----CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS-------
T ss_pred ---c-----CCHHHHHHHHHhccCC----CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC-------
Confidence 0 1233344556666421 112468999999999864 32 11 24777888765432
Q ss_pred CCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCc----cC----hhhhhhhccc-cccEEEEeCCCCc
Q 003269 577 GDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY----TD----IASLGTLAKY-TGGQVYYYPSFQS 647 (835)
Q Consensus 577 e~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~----vd----iatL~~L~~~-TGG~v~~y~~F~~ 647 (835)
.-+++.++++.+.||.|..+.+.... ++ ...|..++.. |||.+|+..+++.
T Consensus 125 --------------------~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~ 184 (213)
T 1pt6_A 125 --------------------HRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELA 184 (213)
T ss_dssp --------------------HHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGG
T ss_pred --------------------ccHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCHHH
Confidence 12356777888899888777765431 11 3788999998 7899999887654
Q ss_pred chhHHHHHHHHHhhcc
Q 003269 648 TTHGERLRHELSRDLT 663 (835)
Q Consensus 648 ~~d~~~L~~dL~r~l~ 663 (835)
- .++.++|.+.+.
T Consensus 185 l---~~i~~~l~~~i~ 197 (213)
T 1pt6_A 185 L---VTIVKTLGERIF 197 (213)
T ss_dssp G---GGGHHHHHHHHT
T ss_pred H---HHHHHHHHHhhe
Confidence 2 345555555554
No 27
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.19 E-value=1.3e-05 Score=80.96 Aligned_cols=145 Identities=17% Similarity=0.261 Sum_probs=95.9
Q ss_pred EEEEEEecchhHHhhc----hHHHHHHHHHHHHhcC-CCCCCceEEEEEEcCe-EEEEecCCCCCCCceeeecccccccC
Q 003269 429 LYFFLIDVSISAIRSG----MLEVVAQTIKSCLDEL-PGFPRTQIGFITFDST-IHFYNMKSSLTQPQMMVISDLDDIFV 502 (835)
Q Consensus 429 ~yvFvIDvS~~av~sG----~l~~~~~sI~~~L~~L-p~~~rt~VGiITFds~-V~fynl~~~~~~pqmlVvsDldd~f~ 502 (835)
..+|+||+|.++.+.. .++.+++.++..+..+ ...++.+||||+|... -+ +
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~--------------~--------- 60 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ--------------V--------- 60 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCC--------------E---------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcE--------------E---------
Confidence 5799999999886432 4666777666544322 1123369999999752 11 1
Q ss_pred CCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc-----CCEEEEEecCCCCCCcccccccC
Q 003269 503 PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL-----GGKLLIFQNSLPSLGVGCLKLRG 577 (835)
Q Consensus 503 Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~-----GGkIivF~sg~Pt~GpG~L~~re 577 (835)
++++...+..|..+|+.|.. ..++++|.||..|..+|++. ..||++|+++-=+
T Consensus 61 ------~~plT~d~~~i~~~L~~l~~------~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~---------- 118 (192)
T 2x5n_A 61 ------LSTLTRDYGKFLSAMHDLPV------RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIV---------- 118 (192)
T ss_dssp ------EEEEESCHHHHHHHHTTCCC------CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCS----------
T ss_pred ------ecCCCCCHHHHHHHHHcCCC------CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCC----------
Confidence 12233346677778887642 24689999999999999874 3477888764200
Q ss_pred CcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcccc
Q 003269 578 DDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYT 635 (835)
Q Consensus 578 ~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~T 635 (835)
....-..++++++.+.||.|+++.++.+.-+-. |..+++.+
T Consensus 119 ----------------~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 119 ----------------EDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp ----------------SCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred ----------------CCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 011234788999999999999999987765556 88888774
No 28
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.09 E-value=3e-05 Score=76.54 Aligned_cols=163 Identities=17% Similarity=0.192 Sum_probs=103.3
Q ss_pred CEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCC
Q 003269 428 PLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDD 507 (835)
Q Consensus 428 p~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~ 507 (835)
.-.+||||.|.+.-.. -++.+++.++..++.|. ..+.+||||+|++.++..- ++.
T Consensus 3 ~divfvlD~S~Sm~~~-~~~~~k~~~~~~~~~l~-~~~~rv~vv~fs~~~~~~~--------------~l~--------- 57 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPD-EFQKILDFMKDVMKKCS-NTSYQFAAVQFSTSYKTEF--------------DFS--------- 57 (179)
T ss_dssp EEEEEEEECBTTCCHH-HHHHHHHHHHHHHHHTT-TSSEEEEEEEESSSEEEEE--------------CHH---------
T ss_pred ccEEEEEeCCCCCCHH-HHHHHHHHHHHHHHHhC-CCCeEEEEEEECCceeEEE--------------cCc---------
Confidence 3579999999886432 36778888888888883 2347999999998765310 000
Q ss_pred cccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHH-HHHh-cCC------EEEEEecCCCCCCcccccccCCc
Q 003269 508 LLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFM-VMSR-LGG------KLLIFQNSLPSLGVGCLKLRGDD 579 (835)
Q Consensus 508 lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~-lL~~-~GG------kIivF~sg~Pt~GpG~L~~re~~ 579 (835)
. ..+++.+..+++.|..+ ...+.+|.||+.|.. ++.. .|+ .|++++.|.++.|.
T Consensus 58 ---~-~~~~~~~~~~~~~i~~~-----~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~--------- 119 (179)
T 1mjn_A 58 ---D-YVKRKDPDALLKHVKHM-----LLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSG--------- 119 (179)
T ss_dssp ---H-HHHHCCHHHHHTTCCCC-----CBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCS---------
T ss_pred ---c-cCCHHHHHHHHHhcccC-----CCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCc---------
Confidence 0 11223456677888653 246889999999985 4443 233 47788888765431
Q ss_pred ccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCcc---Chhhhhhhcccccc-EEEEeCCCCcchhHHHHH
Q 003269 580 LRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYT---DIASLGTLAKYTGG-QVYYYPSFQSTTHGERLR 655 (835)
Q Consensus 580 ~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~v---diatL~~L~~~TGG-~v~~y~~F~~~~d~~~L~ 655 (835)
+ . ..+.||.|-.+.++...- |..+|..++..++| .+|+..+|+.- .++.
T Consensus 120 ------~----~--------------~~~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~L---~~i~ 172 (179)
T 1mjn_A 120 ------N----I--------------DAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL---KDLC 172 (179)
T ss_dssp ------C----C--------------GGGTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGS---CCHH
T ss_pred ------c----h--------------HHHCCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHHH---HHHH
Confidence 0 0 023566665555554322 24789999999987 47777877542 3355
Q ss_pred HHHHh
Q 003269 656 HELSR 660 (835)
Q Consensus 656 ~dL~r 660 (835)
++|.+
T Consensus 173 ~~i~~ 177 (179)
T 1mjn_A 173 TELQK 177 (179)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 29
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.09 E-value=3.5e-06 Score=100.68 Aligned_cols=178 Identities=13% Similarity=0.189 Sum_probs=109.4
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
.+.-+|||||.|.++-... ++.+++.++..|+.|.. ..+.|||||+|++..+..- ++.+
T Consensus 242 ~~~div~vlD~SgSM~~~~-~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~--------------~l~~----- 301 (741)
T 3hrz_D 242 GSMNIYLVLDGSGSIGASD-FTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWV--------------KVSE----- 301 (741)
T ss_dssp CEEEEEEEEECSTTTCHHH-HHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE--------------CTTS-----
T ss_pred CceeEEEEeccCCcccccc-hHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeE--------------eecc-----
Confidence 3557899999999874432 67788888888887753 2348999999987654321 1110
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHh-----cCC------EEEEEecCCCCCCcccc
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR-----LGG------KLLIFQNSLPSLGVGCL 573 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~-----~GG------kIivF~sg~Pt~GpG~L 573 (835)
.-...++.+.+.|++|..... .....+.+|.||+.|.+.|.. .++ .||++++|.+|.|..-.
T Consensus 302 ------~~~~~~~~~~~~i~~l~~~~~-~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~ 374 (741)
T 3hrz_D 302 ------ADSSNADWVTKQLNEINYEDH-KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPI 374 (741)
T ss_dssp ------GGGGCHHHHHHHHTTCCGGGG-SSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTH
T ss_pred ------cCCcCHHHHHHHHHhcccccc-cCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCch
Confidence 001235566777888863211 124568899999999999821 112 48899999998774211
Q ss_pred cccCCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccccccE--EEEeCCC
Q 003269 574 KLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYTGGQ--VYYYPSF 645 (835)
Q Consensus 574 ~~re~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~TGG~--v~~y~~F 645 (835)
...++ .+.. .. ..+.++++.+.||.|..+.++. .+|-.+|..|+..++|. +|+..+|
T Consensus 375 ~~~~~-i~~~-----~~--------~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~g~~~~~~~~~~ 433 (741)
T 3hrz_D 375 TVIDE-IRDL-----LY--------IGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKDNEQHVFKVKDM 433 (741)
T ss_dssp HHHHH-HHHH-----TT--------CSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCTTCCCEECBSSH
T ss_pred HHHHH-HHHH-----hh--------cccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCCCcceEEEeCCH
Confidence 11000 0000 00 0112223445666555555543 48889999999999996 6666654
No 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.97 E-value=3e-05 Score=90.59 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=87.6
Q ss_pred CEEEEEEecchhHHhh-----chHHHHHHHHHHHHhcC-CCCCCceEEEEEEcCeEEEEecCCCCCCCceeeeccccccc
Q 003269 428 PLYFFLIDVSISAIRS-----GMLEVVAQTIKSCLDEL-PGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIF 501 (835)
Q Consensus 428 p~yvFvIDvS~~av~s-----G~l~~~~~sI~~~L~~L-p~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f 501 (835)
-..|||||+|.++.+. ..|+.++++|...++.. -..++.+||||+|++.-.--.+........+.++.+|+.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~-- 85 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLML-- 85 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEEC--
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCC--
Confidence 3589999999988642 36888888888888741 111236899999975421111111000011222222211
Q ss_pred CCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc------C-CEEEEEecCCCCCCccccc
Q 003269 502 VPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL------G-GKLLIFQNSLPSLGVGCLK 574 (835)
Q Consensus 502 ~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~------G-GkIivF~sg~Pt~GpG~L~ 574 (835)
.....|..|-+.|. ......++|.||.+|..+|+.. + =+||+|++|--+.|
T Consensus 86 ------------~~~~~l~~l~~~l~-----~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~----- 143 (565)
T 1jey_B 86 ------------PDFDLLEDIESKIQ-----PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFS----- 143 (565)
T ss_dssp ------------CCHHHHHHHHTTCC-----CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCC-----
T ss_pred ------------CCHHHHHHHHhhcc-----CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCC-----
Confidence 11233333333242 1124678999999999999764 2 26888888653322
Q ss_pred ccCCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEE-EEEecC
Q 003269 575 LRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVN-VYAFSD 620 (835)
Q Consensus 575 ~re~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVD-lF~~s~ 620 (835)
..-..++|+++.+.||.|+ ++.+..
T Consensus 144 ---------------------~~~~~~~a~~l~~~gI~i~~vig~g~ 169 (565)
T 1jey_B 144 ---------------------KSQLDIIIHSLKKCDISLQFFLPFSL 169 (565)
T ss_dssp ---------------------CTTHHHHHHHHHHTTEEEEEEESSCC
T ss_pred ---------------------HHHHHHHHHHHHhcCcEEEEEeccCC
Confidence 1124678999999999999 664543
No 31
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.86 E-value=0.00013 Score=73.12 Aligned_cols=151 Identities=10% Similarity=0.102 Sum_probs=95.5
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVP 503 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~P 503 (835)
.+--.+||||.|.+.-.. -++.+++.+++.++.|.- ..+.+||||+|++.++.. .+. +
T Consensus 20 ~~~DivfvlD~S~Sm~~~-~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~------------~------- 79 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEA-DFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFS------------E------- 79 (199)
T ss_dssp CCCEEEEEEECCTTTCHH-HHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTT------------S-------
T ss_pred CCcCEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecC------------C-------
Confidence 455689999999987433 367788999999998842 235899999999876542 111 0
Q ss_pred CCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHH-H-hcCC------EEEEEecCCCCCCcccccc
Q 003269 504 LPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVM-S-RLGG------KLLIFQNSLPSLGVGCLKL 575 (835)
Q Consensus 504 l~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL-~-~~GG------kIivF~sg~Pt~GpG~L~~ 575 (835)
...++.+.+.|++|... ....+.+|.||+.|.+.+ . ..|+ .||++++|..+
T Consensus 80 ---------~~~~~~~~~~i~~l~~~----gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~-------- 138 (199)
T 3zqk_A 80 ---------AQSKGDILQRLREIRYQ----GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPAS-------- 138 (199)
T ss_dssp ---------CCCHHHHHHHHHHCCCC----CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCS--------
T ss_pred ---------cCCHHHHHHHHHhCcCC----CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCc--------
Confidence 01244566677777532 112478999999998743 2 2233 36666666421
Q ss_pred cCCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCC-ccChhhhhhhccccccEEEEeCCCCc
Q 003269 576 RGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDK-YTDIASLGTLAKYTGGQVYYYPSFQS 647 (835)
Q Consensus 576 re~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~-~vdiatL~~L~~~TGG~v~~y~~F~~ 647 (835)
++.+ .+ ..+ |.+|+++-. ..|..+|..++. +|..|+..+|+.
T Consensus 139 --d~v~--------~~----------------~~~--v~v~~iGiG~~~~~~~L~~iA~--~~~~~~~~~~~~ 181 (199)
T 3zqk_A 139 --DEIK--------RL----------------PGD--IQVVPIGVGPNANVQELERIGW--PNAPILIQDFET 181 (199)
T ss_dssp --SCCC--------CC----------------CTT--EEEEEEEESTTCCHHHHHHHHT--TSCCEEESCTTT
T ss_pred --hHHH--------HH----------------hCC--CEEEEEEcCCCCCHHHHHHHhC--CCceEEeCCHHH
Confidence 1000 00 134 456665543 789999999997 566678887754
No 32
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.75 E-value=0.00019 Score=70.47 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=89.4
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLP 505 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~-~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~ 505 (835)
+.-+|||||+|.++-.. -++.+++.|+..++.|... ...+||||+|++.++..- ++.+
T Consensus 17 ~~divfvlD~SgSm~~~-~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~--------------~l~~------ 75 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQ-NFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQW--------------DLQS------ 75 (178)
T ss_dssp CEEEEEEEECCTTTCHH-HHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEE--------------CTTS------
T ss_pred CeeEEEEEECCCCCCHH-HHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEE--------------eCCC------
Confidence 45689999999987432 3678888999999888632 358999999998765321 1110
Q ss_pred CCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHh--cC------CEEEEEecCCCCCCcccccccC
Q 003269 506 DDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR--LG------GKLLIFQNSLPSLGVGCLKLRG 577 (835)
Q Consensus 506 ~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~--~G------GkIivF~sg~Pt~GpG~L~~re 577 (835)
+- .+.++.+.+.|+.|.. ....+.+|.||+.|.+.|.. .| ..||++++|.++.+
T Consensus 76 --~~---~~~~~~~~~~i~~l~~-----~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~-------- 137 (178)
T 2xgg_A 76 --PN---AVDKQLAAHAVLDMPY-----KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSD-------- 137 (178)
T ss_dssp --GG---GSCHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHH--------
T ss_pred --CC---ccCHHHHHHHHHhCCC-----CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCC--------
Confidence 00 1145566677788762 12467899999999998642 12 35777777765421
Q ss_pred CcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhh
Q 003269 578 DDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASL 628 (835)
Q Consensus 578 ~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL 628 (835)
.-+++.++++.+.||.|..+.+.. .+|-..|
T Consensus 138 -------------------~~~~~~~~~l~~~gi~v~~igvG~-~~~~~~l 168 (178)
T 2xgg_A 138 -------------------FRTVRAAKEIRELGGIVTVLAVGH-YVAAALV 168 (178)
T ss_dssp -------------------HHHSHHHHHHHHTTCEEEEEECC---------
T ss_pred -------------------ccHHHHHHHHHHCCCEEEEEEcCC-cCCHHHH
Confidence 113566777888888777766643 3454433
No 33
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.54 E-value=9.5e-05 Score=92.63 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=104.8
Q ss_pred CCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEE-ecCCCCCCCceeeecccccccCCCC
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFY-NMKSSLTQPQMMVISDLDDIFVPLP 505 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fy-nl~~~~~~pqmlVvsDldd~f~Pl~ 505 (835)
+.-.+||||.|.+.-.. -++.+++.+++.++.+.. .+.+||||+|++.++.. .+.. ..|
T Consensus 130 ~~DIvfvlD~SgSm~~~-~f~~~k~fv~~lv~~~~~-~~~rVglV~Fs~~~~~~~~lt~---------~~~--------- 189 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSR-NFATMMNFVRAVISQFQR-PSTQFSLMQFSNKFQTHFTFEE---------FRR--------- 189 (1095)
T ss_dssp CEEEEEEEECCTTSCSH-HHHHHHHHHHHHHHSSCS-SSEEEEEEEESSSEEEEECSHH---------HHS---------
T ss_pred CccEEEEEcCCCCCChh-HHHHHHHHHHHHHHhccc-cccEEEEEEECCeEEEEecCcc---------cCC---------
Confidence 34579999999886432 367889999999999874 35899999998875532 1110 000
Q ss_pred CCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHH-H-hcCC------EEEEEecCCCCCCcccccccC
Q 003269 506 DDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVM-S-RLGG------KLLIFQNSLPSLGVGCLKLRG 577 (835)
Q Consensus 506 ~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL-~-~~GG------kIivF~sg~Pt~GpG~L~~re 577 (835)
++.+..+|+.|..+ ...+.+|.||+.|...| . ..|+ .||++++|..+..
T Consensus 190 ----------~~~l~~ai~~i~~~-----gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d-------- 246 (1095)
T 3k6s_A 190 ----------SSNPLSLLASVHQL-----QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGD-------- 246 (1095)
T ss_dssp ----------CSCGGGGTTTCCCC-----CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSC--------
T ss_pred ----------HHHHHHHHhhhhcc-----cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCC--------
Confidence 11112334455432 24688999999998754 2 2333 3666666654310
Q ss_pred CcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCCc---cChhhhhhhcccccc-EEEEeCCCCc
Q 003269 578 DDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDKY---TDIASLGTLAKYTGG-QVYYYPSFQS 647 (835)
Q Consensus 578 ~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~---vdiatL~~L~~~TGG-~v~~y~~F~~ 647 (835)
..-+++.++++.+.||.|-.+.+...+ +|..+|..|+..++| .+|...+|+.
T Consensus 247 ------------------~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~ 302 (1095)
T 3k6s_A 247 ------------------SLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDA 302 (1095)
T ss_dssp ------------------SSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGG
T ss_pred ------------------chhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHH
Confidence 012467778888888876666666553 689999999999887 6777777754
No 34
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.90 E-value=0.029 Score=66.01 Aligned_cols=156 Identities=17% Similarity=0.239 Sum_probs=89.9
Q ss_pred CEEEEEEecchhHHhhc------hHHHHHHHHHHHHhcC-CCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccc
Q 003269 428 PLYFFLIDVSISAIRSG------MLEVVAQTIKSCLDEL-PGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDI 500 (835)
Q Consensus 428 p~yvFvIDvS~~av~sG------~l~~~~~sI~~~L~~L-p~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~ 500 (835)
-..||+||+|.++.+.. .|+.+++.|...+... -..++.+||||.|++.-. +..+....+.++.+|+.+
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t----~n~l~~d~i~v~~~L~~~ 111 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKD----KNSVNFKNIYVLQELDNP 111 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSC----BSTTCCTTEEEEEEEECC
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCC----CCcCCCCCeEEEecCCCC
Confidence 35799999999886532 5888888888888741 111236899999986531 111122233444333211
Q ss_pred cCCCCCCcccchhhhHHHHHHHHh-----hCCccccCCCCcccchHHHHHHHHHHHHhcC-----CEEEEEecCCCCCCc
Q 003269 501 FVPLPDDLLVNLSESRSVVDTLLD-----SLPSMFQDNMNVESAFGPALKAAFMVMSRLG-----GKLLIFQNSLPSLGV 570 (835)
Q Consensus 501 f~Pl~~~lLv~l~esr~~I~~lLd-----~L~~~~~~~~~~~~alG~AL~aA~~lL~~~G-----GkIivF~sg~Pt~Gp 570 (835)
+. +....|.++++ .+...+.. ..+.++|.||.+|+.+++..+ =+||+||+|--+.|-
T Consensus 112 ----------~~-~~ik~l~~l~~~~~~~~~~~~~g~--~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~ 178 (609)
T 1jey_A 112 ----------GA-KRILELDQFKGQQGQKRFQDMMGH--GSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGN 178 (609)
T ss_dssp ----------CH-HHHHHHHTTSHHHHHHHHHHHHCC--SCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTT
T ss_pred ----------CH-HHHHHHHHHhhcccchhhhhhcCC--CCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCC
Confidence 00 11111111111 00111111 246789999999999998752 378888886433221
Q ss_pred ccccccCCcccccCCccccccCCCCcHHHHHHHHHHhhcCeEEEEEEecCC
Q 003269 571 GCLKLRGDDLRVYGTDKEHSLRIPEDPFYKQMAADLTKFQIAVNVYAFSDK 621 (835)
Q Consensus 571 G~L~~re~~~r~~gt~~e~~l~~pa~~FYk~La~~~~~~gIsVDlF~~s~~ 621 (835)
++ ....-...+|+.+.+.||.|.+|.++..
T Consensus 179 ---------------~~------~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 179 ---------------DS------AKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp ---------------CH------HHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred ---------------ch------HHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 00 0012346789999999999999987654
No 35
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=96.70 E-value=0.0026 Score=78.00 Aligned_cols=146 Identities=16% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCCCEEEEEEecchhHHhhc-----hHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEE---ecCCCCCCCceeeecc
Q 003269 425 PMPPLYFFLIDVSISAIRSG-----MLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFY---NMKSSLTQPQMMVISD 496 (835)
Q Consensus 425 p~pp~yvFvIDvS~~av~sG-----~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fy---nl~~~~~~pqmlVvsD 496 (835)
..+--.|||||+|.++-... .++.++++++..|+.|...++.+||||+|++.+... .+........-.+..|
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~ 301 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLND 301 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECC
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccccccccccccccccc
Confidence 35667999999999985433 356778888888877654345899999999865320 0000000000000000
Q ss_pred -----ccc-ccCCCCCCc-ccchhhhHHHHHHHHhhCCccccC-------CCCcccchHHHHHHHHHHHHh-c--C--CE
Q 003269 497 -----LDD-IFVPLPDDL-LVNLSESRSVVDTLLDSLPSMFQD-------NMNVESAFGPALKAAFMVMSR-L--G--GK 557 (835)
Q Consensus 497 -----ldd-~f~Pl~~~l-Lv~l~esr~~I~~lLd~L~~~~~~-------~~~~~~alG~AL~aA~~lL~~-~--G--Gk 557 (835)
.+. .|.-...++ .+++...++.|..|.+.|...... .....+.++.||..|..+|+. . + ..
T Consensus 302 ~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kv 381 (893)
T 2ww8_A 302 SLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKV 381 (893)
T ss_dssp CTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEE
T ss_pred ccccccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeE
Confidence 000 000000111 234444455555555555432110 113468899999999999974 1 2 25
Q ss_pred EEEEecCCCCCCc
Q 003269 558 LLIFQNSLPSLGV 570 (835)
Q Consensus 558 IivF~sg~Pt~Gp 570 (835)
||++++|.++.+-
T Consensus 382 IILLTDG~pt~~~ 394 (893)
T 2ww8_A 382 IFHITDGVPTMSY 394 (893)
T ss_dssp EEEEESSCCSEEC
T ss_pred EEEEcCCCCCccc
Confidence 7888899999653
No 36
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.64 E-value=0.094 Score=62.57 Aligned_cols=264 Identities=13% Similarity=0.152 Sum_probs=130.5
Q ss_pred CCEEEEEEecchhHHhhchHHHH---HHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeeccc-cccc-
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVV---AQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDL-DDIF- 501 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~---~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDl-dd~f- 501 (835)
|--.+||||+|.++.. .++.+ ...|.+.|..+-. +.||||..|-+....--.. ..+ .++ ..+.
T Consensus 111 pvDly~LmD~S~SM~d--di~~lk~l~~~l~~~l~~~t~--~~r~Gfgsf~Dk~~~P~~~---~~p-----~~~~~~pc~ 178 (690)
T 3fcs_B 111 PVDIYYLMDLSYSMKD--DLWSIQNLGTKLATQMRKLTS--NLRIGFGAFVDKPVSPYMY---ISP-----PEALENPCY 178 (690)
T ss_dssp CEEEEEEEECSGGGHH--HHHHTTTTTHHHHHHHHHHCS--CEEEEEEEECCCSSTTTSC---CCS-----TTTTTCTTS
T ss_pred CccEEEEecCCcchHH--HHHHHHHHHHHHHHHHHhhCc--CceEEeEEeeccccCCccc---cCh-----hhhccCCCc
Confidence 4568999999998842 23333 3334444444443 4899999995432110000 000 111 1111
Q ss_pred ------C-CCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHH--HHHHh--cCCEEEEEecCCCCC--
Q 003269 502 ------V-PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAF--MVMSR--LGGKLLIFQNSLPSL-- 568 (835)
Q Consensus 502 ------~-Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~--~lL~~--~GGkIivF~sg~Pt~-- 568 (835)
. |..-...++|.+..+.+.+.|+++.- ..+...+|..|-+.++||+ .-+.= -.-|||||.+-.+-.
T Consensus 179 ~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~i-sgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~a 257 (690)
T 3fcs_B 179 DMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSV-SRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIA 257 (690)
T ss_dssp SSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCC-CCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCT
T ss_pred CCCCCCCCCccceeecccCCCHHHHHHHhhceec-cCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccC
Confidence 0 11112235677777777777777652 2334557766766666663 33321 235899998888754
Q ss_pred Cccccccc--CCcccccCCccccccCCC----CcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcc-ccccEEEE
Q 003269 569 GVGCLKLR--GDDLRVYGTDKEHSLRIP----EDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAK-YTGGQVYY 641 (835)
Q Consensus 569 GpG~L~~r--e~~~r~~gt~~e~~l~~p----a~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~-~TGG~v~~ 641 (835)
|-|+|-.. .++.+-|-.. .. ++.. ...-..+|++++.+++|.+ ||+.....+++. ..|++ .+|+.+-.
T Consensus 258 gDg~l~gi~~pnd~~chl~~-~~-~y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~~~y--~~l~~~i~~s~v~~ 332 (690)
T 3fcs_B 258 LDGRLAGIVQPNDGQCHVGS-DN-HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGTTVGV 332 (690)
T ss_dssp TGGGGGTCCSCCCCCCCBCT-TC-BBGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGHHHH--HHHHHHSTTCEEEE
T ss_pred CCccccceecCCCcceeecC-CC-ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCchhhH--HHHHhhcCCceeee
Confidence 77776432 1223322110 11 1111 1123577888888999844 666555544432 23333 34555555
Q ss_pred eCCCCcchhHHHHHHHHHhhcccccccceEEEEEe-CCCceEeeee--cCcccCCCCceEeccCCCCCcEEEEEeec
Q 003269 642 YPSFQSTTHGERLRHELSRDLTRETAWEAVMRIRC-GKGVRFTNYH--GNFMLRSTDLLALPAVDCDKAYAMQLSLE 715 (835)
Q Consensus 642 y~~F~~~~d~~~L~~dL~r~l~r~~g~~a~mrVR~-S~Gl~V~~~~--Gnf~~rs~~~~~l~~id~d~Sia~~f~~d 715 (835)
... ++.+..+|..+-++.|. -.++|++.. .++|+|+-.- .+... ....-...++...+.+.|++++.
T Consensus 333 l~~--dSsni~~li~~~y~~i~----s~v~l~~~~~p~~~~v~~~s~C~~~~~-~~~~~~C~~v~~g~~v~F~v~v~ 402 (690)
T 3fcs_B 333 LSM--DSSNVLQLIVDAYGKIR----SKVELEVRDLPEELSLSFNATCLNNEV-IPGLKSCMGLKIGDTVSFSIEAK 402 (690)
T ss_dssp ECT--TCTTHHHHHHHHHHHHT----TCEEEEEESCCTTEEEEEEEECSTTCE-EETCCEECSCCTTCEEEEEEEEE
T ss_pred ecc--ccHHHHHHHHHHHHhhh----cceeeeccCCCCcceEEEEeecCCCCc-ccCCCcccccccCCeEEEEEEEE
Confidence 543 23344555555555443 334444433 5566655321 11000 00111234455566666666654
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=96.19 E-value=0.23 Score=56.39 Aligned_cols=269 Identities=13% Similarity=0.193 Sum_probs=134.2
Q ss_pred CCEEEEEEecchhHHhhchHHHH---HHHHHHHHhcCCCCCCceEEEEEE-cCeEE-EEecCCC--CCCCceeeeccccc
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVV---AQTIKSCLDELPGFPRTQIGFITF-DSTIH-FYNMKSS--LTQPQMMVISDLDD 499 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~---~~sI~~~L~~Lp~~~rt~VGiITF-ds~V~-fynl~~~--~~~pqmlVvsDldd 499 (835)
|--.+||+|+|.++.. .++.+ ...|.+.|..+- .+.||||..| |+.|. |++.... +..|- .+.+.
T Consensus 111 pvDLy~LmDlS~SM~d--dl~~lk~lg~~L~~~l~~~t--~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc----~~~~~ 182 (472)
T 3t3p_B 111 PVDIYYLMDLSYSMKD--DLWSIQNLGTKLATQMRKLT--SNLRIGFGAFVDKPVSPYMYISPPEALENPC----YDMKT 182 (472)
T ss_dssp CEEEEEEEECSGGGHH--HHHHTTTHHHHHHHHHTTTC--SCEEEEEEEECCCSSTTTSCCCSHHHHHCTT----TTTTS
T ss_pred CceEEEEEccCcchHH--HHHHHHHHHHHHHHHHHhcC--cCcEEEEEEeeccccCccccCChhhhhcCCC----ccccc
Confidence 4568999999998843 34444 444444444443 3489999999 44331 1111000 00000 00000
Q ss_pred ccC-CCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHH--HHHHh--cCCEEEEEecCCCCC--Cccc
Q 003269 500 IFV-PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAF--MVMSR--LGGKLLIFQNSLPSL--GVGC 572 (835)
Q Consensus 500 ~f~-Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~--~lL~~--~GGkIivF~sg~Pt~--GpG~ 572 (835)
.-. +..-..++++.+..+.+.+.++++.- ..+...+|..|.+-+++|+ +-+.= ..-||+||.+-.+-. |-|+
T Consensus 183 ~c~p~f~fr~~l~LT~d~~~F~~~V~~~~i-SGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgk 261 (472)
T 3t3p_B 183 TCLPMFGYKHVLTLTDQVTRFNEEVKKQSV-SRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGR 261 (472)
T ss_dssp CCCCCCSEEEEEEEESCHHHHHHHHHHCCC-CCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGG
T ss_pred CCCCCcceeEeeccCCCHHHHHHHHhhccc-cCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCcc
Confidence 000 11112246777777777778887642 2344567777776667764 23321 236899998888754 8887
Q ss_pred cccc--CCcccccCCccccccC---CCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccc-cccEEEEeCCCC
Q 003269 573 LKLR--GDDLRVYGTDKEHSLR---IPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKY-TGGQVYYYPSFQ 646 (835)
Q Consensus 573 L~~r--e~~~r~~gt~~e~~l~---~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~-TGG~v~~y~~F~ 646 (835)
|--. -++.+-|=.+ ...+. .-...-..+|++++.+++|.+ ||+......++. ..|+++ .|+.+-....
T Consensus 262 L~GIv~pnDg~CHL~~-~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~L~~-- 335 (472)
T 3t3p_B 262 LAGIVQPNDGQCHVGS-DNHYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVVNLY--QNYSELIPGTTVGVLSM-- 335 (472)
T ss_dssp GGTCCCCCCCCCCBCT-TCBBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGGGHHHH--HHHHHTSTTCEEEECCT--
T ss_pred ccceecCCCCceEECC-CCcccccccCCCCCHHHHHHHHHhcCccE-EEEEeccchhHH--HHHHHhCCCceeeeccc--
Confidence 7532 1223322111 11111 112234678888888888654 777766544432 233333 3444444432
Q ss_pred cchhHHHHHHHHHhhcccccccceEEEEEe-CCCceEeee--ecCcccCCCCceEeccCCCCCcEEEEEeec
Q 003269 647 STTHGERLRHELSRDLTRETAWEAVMRIRC-GKGVRFTNY--HGNFMLRSTDLLALPAVDCDKAYAMQLSLE 715 (835)
Q Consensus 647 ~~~d~~~L~~dL~r~l~r~~g~~a~mrVR~-S~Gl~V~~~--~Gnf~~rs~~~~~l~~id~d~Sia~~f~~d 715 (835)
++.+.-.|..+-++.|.. .+.|+... .++|+|+-. -++... ....-...++.-.+.+.|.+++.
T Consensus 336 dSsNiv~LI~~aY~~i~s----~V~l~~~~~p~~l~v~y~s~C~~~~~-~~~~~~C~~v~ig~~v~F~v~v~ 402 (472)
T 3t3p_B 336 DSSNVLQLIVDAYGKIRS----KVELEVRDLPEELSLSFNATCLNNEV-IPGLKSCMGLKIGDTVSFSIEAK 402 (472)
T ss_dssp TSTTHHHHHHHHHHHHTT----CEEEEEESCCTTEEEEEEEEETTTEE-EETCCEECSCCTTCEEEEEEEEE
T ss_pred cchhHHHHHHHHHHHhhe----EEEEeeCCCCCcEEEEEEeECCCCCc-cCCCccCCCcccCCEEEEEEEEE
Confidence 233455666666665532 34444432 455665522 111100 01112344555566666666654
No 38
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=95.91 E-value=0.14 Score=57.76 Aligned_cols=269 Identities=16% Similarity=0.210 Sum_probs=134.0
Q ss_pred CCEEEEEEecchhHHhhchHHHHH---HHHHHHHhcCCCCCCceEEEEEE-cCeEE-EEecC-CCCCCCceeeecccccc
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVA---QTIKSCLDELPGFPRTQIGFITF-DSTIH-FYNMK-SSLTQPQMMVISDLDDI 500 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~---~sI~~~L~~Lp~~~rt~VGiITF-ds~V~-fynl~-~~~~~pqmlVvsDldd~ 500 (835)
|-=.+||+|+|.++.. .++.++ ..|.+.|..+-. +.||||..| |+.|. |.+.. ..+..|---. .+-+..
T Consensus 122 PVDLyyLmDlS~SM~d--dl~~lk~lg~~L~~~l~~~t~--~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~-~~c~~~ 196 (454)
T 3vi3_B 122 PIDLYYLMDLSYSMKD--DLENVKSLGTDLMNEMRRITS--DFRIGFGSFVEKTVMPYISTTPAKLRNPCTSE-QNCTTP 196 (454)
T ss_dssp CEEEEEEEECSGGGHH--HHHHHTTHHHHHHHHHTTTCS--SEEEEEEEECCCSSTTTSCCSTTTTTCCSCSS-SCCCCC
T ss_pred ceeEEEEecCCcchhh--HHHHHHHHHHHHHHHHHhcCC--CeEEEEEEEeccccCCcccCChHHhcCCCcCc-cCCCCC
Confidence 4458899999998843 344444 444444444443 489999999 44332 11111 1111110000 000111
Q ss_pred cCCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhc----CCEEEEEecCCCC--CCccccc
Q 003269 501 FVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRL----GGKLLIFQNSLPS--LGVGCLK 574 (835)
Q Consensus 501 f~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~----GGkIivF~sg~Pt--~GpG~L~ 574 (835)
| .-...+++.+..+.+++.++++. ...+...+|..|-+-+++|+- -+.+ .-||+||.+-.+- .|-|+|-
T Consensus 197 f---~fr~~l~LT~d~~~F~~~V~~~~-isGn~D~PEgg~DAl~Qaavc-~~~igWR~a~rllV~~TDa~fH~agDgkL~ 271 (454)
T 3vi3_B 197 F---SYKNVLSLTNKGEVFNELVGKQR-ISGNLDSPEGGFDAIMQVAVC-GSLIGWRNVTRLLVFSTDAGFHFAGDGKLG 271 (454)
T ss_dssp C---SEEEEEEEESCHHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHC-HHHHTCCSSEEEEEEEESSCBCCTTTTGGG
T ss_pred c---ceeeeeecCCCHHHHHHHHhhcc-ccCCCcCCchhHHHHHHHhcc-ccccCCccceEEEEEECCCCcCcCCCcccc
Confidence 1 11225677777777788888764 223445677777766777641 1222 4589999888775 3888874
Q ss_pred cc--CCcccccCCcccccc-CCCCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcccc-ccEEEEeCCCCcchh
Q 003269 575 LR--GDDLRVYGTDKEHSL-RIPEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYT-GGQVYYYPSFQSTTH 650 (835)
Q Consensus 575 ~r--e~~~r~~gt~~e~~l-~~pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~T-GG~v~~y~~F~~~~d 650 (835)
-. .++.+-|=.+.+... ..-...-.-+|++++.+++|-+ ||+......++. ..|+++- |+.+-.... ++.+
T Consensus 272 GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~Y--~~L~~~ip~s~vg~Ls~--dSsN 346 (454)
T 3vi3_B 272 GIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPVY--KELKNLIPKSAVGTLSA--NSSN 346 (454)
T ss_dssp TCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHHH--HHHHHHSTTEEEEEECT--TCTT
T ss_pred ceecCCCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchHH--HHHHHhCCCceeeEccc--cchh
Confidence 32 223332211111000 0112334678899999998865 777766655443 2333333 333333332 2234
Q ss_pred HHHHHHHHHhhcccccccceEEEEEe-CCCceEeeeecCcccCC--CC--ceEeccCCCCCcEEEEEeec
Q 003269 651 GERLRHELSRDLTRETAWEAVMRIRC-GKGVRFTNYHGNFMLRS--TD--LLALPAVDCDKAYAMQLSLE 715 (835)
Q Consensus 651 ~~~L~~dL~r~l~r~~g~~a~mrVR~-S~Gl~V~~~~Gnf~~rs--~~--~~~l~~id~d~Sia~~f~~d 715 (835)
.-.|..+-++.|. -.+.|+... .+||+|+-.- .+.... .. .-...++.-.+.+.|++++.
T Consensus 347 iv~LI~~aY~~i~----S~V~l~~~~~p~~l~v~y~s-~C~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~ 411 (454)
T 3vi3_B 347 VIQLIIDAYNSLS----SEVILENGKLSEGVTISYKS-YCKNGVNGTGENGRKCSNISIGDEVQFEISIT 411 (454)
T ss_dssp HHHHHHHHHHHHH----TCEEEEECCCCTTEEEEEEE-ECGGGCEEEGGGGGEECCCCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHhh----eEEEEecCCCCCceEEEEEe-ecCCCCccCCccCCCCCCccCCCEEEEEEEEE
Confidence 4556555555443 233443322 4456554221 110000 00 02344555666777766654
No 39
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.87 E-value=0.024 Score=59.10 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=63.1
Q ss_pred CCCEEEEEEecchhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCC
Q 003269 426 MPPLYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPGF-PRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPL 504 (835)
Q Consensus 426 ~pp~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~~-~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl 504 (835)
.+--+|||||+|.++- +-++.++++|++.|..+... .+.+|+||+|++... . . ..++.
T Consensus 133 ~~~~vvfLVDtSgSM~--~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~-------~-~--~~ll~--------- 191 (242)
T 3rag_A 133 VALHLVVCLDTSASMR--DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGE-------E-A--TRLVQ--------- 191 (242)
T ss_dssp SCEEEEEEEECSGGGT--TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTT-------C-S--CEEEE---------
T ss_pred CCCCEEEEEECcccHH--HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCc-------c-c--eeecC---------
Confidence 4567999999999985 56999999999999887632 368999999985310 0 0 01111
Q ss_pred CCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHh
Q 003269 505 PDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSR 553 (835)
Q Consensus 505 ~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~ 553 (835)
+..... .+...|+.|+. ...+.+|.||..|+.+++.
T Consensus 192 ------pfT~~~-~~~~~l~~L~a------gG~Tplg~AL~~A~~~~~~ 227 (242)
T 3rag_A 192 ------PFSSEV-NVAALEAELVA------RGGTPTGPAIDHAADLLLS 227 (242)
T ss_dssp ------EEESSC-CHHHHHHHCCC------CSCCCHHHHHHHHHHHHHH
T ss_pred ------CCCChH-HHHHHHhhCCC------CCCCcHHHHHHHHHHHHHH
Confidence 111111 23455667742 3456699999999999864
No 40
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=95.72 E-value=0.027 Score=67.09 Aligned_cols=203 Identities=18% Similarity=0.216 Sum_probs=101.2
Q ss_pred CCEEEEEEecchhHHhh-chHHHHHHHHHHHHhcCCCCCCceEEEEEEc-CeEEEEec--CCCCCCCceeeecccccccC
Q 003269 427 PPLYFFLIDVSISAIRS-GMLEVVAQTIKSCLDELPGFPRTQIGFITFD-STIHFYNM--KSSLTQPQMMVISDLDDIFV 502 (835)
Q Consensus 427 pp~yvFvIDvS~~av~s-G~l~~~~~sI~~~L~~Lp~~~rt~VGiITFd-s~V~fynl--~~~~~~pqmlVvsDldd~f~ 502 (835)
|--.+||+|+|.++... .-|+.+...|.+.|..+-. +.||||..|- +.|.=|.- ...++.|- .+.+....
T Consensus 104 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~--~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc----~~~~~~c~ 177 (687)
T 3k6s_B 104 PIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITE--SGRIGFGSFVDKTVLPFVNTHPDKLRNPC----PNKEKECQ 177 (687)
T ss_dssp CCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCC--SCEEEEEEECCCSSTTSSCCSSTTTTCCC----CSCCCCCC
T ss_pred ceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCc--CcEEeeEEeeccccCCccccCchhccCCC----CCCCCCcC
Confidence 45689999999987421 0123333445555555544 4899999994 43311110 00111110 00000001
Q ss_pred -CCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHH--HHH--HhcCCEEEEEecCCCCC--Ccccccc
Q 003269 503 -PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAF--MVM--SRLGGKLLIFQNSLPSL--GVGCLKL 575 (835)
Q Consensus 503 -Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~--~lL--~~~GGkIivF~sg~Pt~--GpG~L~~ 575 (835)
+..-...++|.+..+.+.+.|+.+.- ..+...+|..|-+.++||+ +-+ .. .-|||||.+-.+-. |-|+|--
T Consensus 178 ~~f~f~~~l~lt~~~~~F~~~v~~~~i-sgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~g 255 (687)
T 3k6s_B 178 PPFAFRHVLKLTNNSNQFQTEVGKQLI-SGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGA 255 (687)
T ss_dssp CCCSCEEEEEEESCSHHHHHHHHTSCC-CCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGT
T ss_pred CcccceeecccCCCHHHHHHHHhhccc-cCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccc
Confidence 11112245676766777777777752 2334557777766666663 333 12 57899998877754 7777633
Q ss_pred c--CCcccccCCccccccCCCCc----HHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhccc-cccEEEEeC
Q 003269 576 R--GDDLRVYGTDKEHSLRIPED----PFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKY-TGGQVYYYP 643 (835)
Q Consensus 576 r--e~~~r~~gt~~e~~l~~pa~----~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~-TGG~v~~y~ 643 (835)
. .++.+-|-.+. ++..+. .-..+|++++++++|.+ ||+.....+++. ..|+++ +|+.+-...
T Consensus 256 i~~pndg~Chl~~~---~y~~s~~~DyPS~~ql~~~l~~~~I~~-ifavt~~~~~~y--~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 256 ILTPNDGRCHLEDN---LYKRSNEFDYPSVGQLAHKLAENNIQP-IFAVTSRMVKTY--EKLTEIIPKSAVGELS 324 (687)
T ss_dssp CCCCCCSCCCCSSS---BCSSGGGSCCCCGGGHHHHHHHTTCBC-CEEECGGGHHHH--HHHHHHSSSCCEEECC
T ss_pred eecCCCCccccCCC---ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeccchhhH--HHHHhhcCCceeeeec
Confidence 2 12233221111 111111 11355777777888844 555554444432 344433 344455544
No 41
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=95.59 E-value=0.77 Score=52.48 Aligned_cols=264 Identities=20% Similarity=0.202 Sum_probs=133.9
Q ss_pred CCEEEEEEecchhHHhhchHHHHH---HHHHHHHhcCCCCCCceEEEEEE-cCeEEEEecCCCCCCCceeeeccccccc-
Q 003269 427 PPLYFFLIDVSISAIRSGMLEVVA---QTIKSCLDELPGFPRTQIGFITF-DSTIHFYNMKSSLTQPQMMVISDLDDIF- 501 (835)
Q Consensus 427 pp~yvFvIDvS~~av~sG~l~~~~---~sI~~~L~~Lp~~~rt~VGiITF-ds~V~fynl~~~~~~pqmlVvsDldd~f- 501 (835)
|--.+||+|+|.++.. .++.++ ..|.+.|..+-. +-||||..| |+.|.=|. . ..| .++..+.
T Consensus 132 PVDLyyLmDlS~SM~d--dl~~lk~lg~~L~~~l~~~t~--~~RiGfGsFvDK~v~P~~-~---~~p-----~~l~~PC~ 198 (503)
T 3v4v_B 132 PVDLYYLMDLSYSMKD--DLERVRQLGHALLVRLQEVTH--SVRIGFGSFVDKTVLPFV-S---TVP-----SKLRHPCP 198 (503)
T ss_dssp CEEEEEEEECSGGGHH--HHHHHHHSSHHHHHHHTTTCS--CEEEEEEEECCCSSTTTS-C---CCH-----HHHHCCSS
T ss_pred ceeEEEEEecCcchhh--HHHHHHHHHHHHHHHHHhhCc--CcEEeeeeecccccCCcc-c---CCH-----HHhcCCCc
Confidence 4558999999998843 344444 444444544433 489999999 44431010 0 001 0111111
Q ss_pred ------C-CCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHH--HHHH-hcCCEEEEEecCCCCC--C
Q 003269 502 ------V-PLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAF--MVMS-RLGGKLLIFQNSLPSL--G 569 (835)
Q Consensus 502 ------~-Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~--~lL~-~~GGkIivF~sg~Pt~--G 569 (835)
. +..-.-++++.+..+.+.+.++++. ...+...+|..|.+-+++|+ +-+. ...-||+||.+-.+-. |
T Consensus 199 ~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~-iSGnlD~PEggfDAlmQaavC~~~IgWR~a~rllV~~TDA~fH~ag 277 (503)
T 3v4v_B 199 TRLERCQSPFSFHHVLSLTGDAQAFEREVGRQS-VSGNLDSPEGGFDAILQAALCQEQIGWRNVSRLLVFTSDDTFHTAG 277 (503)
T ss_dssp CSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCSSEEEEEEEESSCBCCTT
T ss_pred CCCCCCCCCcceEEEEEecCCHHHHHHHHhhcC-ccCCCCCCchHHHHHHHHhhcccccCCCcceEEEEEECCCCcCcCC
Confidence 0 0111124566666666677777663 22344567777777677764 2231 1146999999877753 7
Q ss_pred ccccccc--CCcccccCCccccccCC----CCcHHHHHHHHHHhhcCeEEEEEEecCCccChhhhhhhcccc-ccEEEEe
Q 003269 570 VGCLKLR--GDDLRVYGTDKEHSLRI----PEDPFYKQMAADLTKFQIAVNVYAFSDKYTDIASLGTLAKYT-GGQVYYY 642 (835)
Q Consensus 570 pG~L~~r--e~~~r~~gt~~e~~l~~----pa~~FYk~La~~~~~~gIsVDlF~~s~~~vdiatL~~L~~~T-GG~v~~y 642 (835)
-|+|--. .++.+-|=.. + .++. -...-..+|++++.+++|. =||+......++. ..|+++- |+.+-..
T Consensus 278 DgkLaGIv~pNDg~CHL~~-~-~~Yt~s~~~DYPSv~ql~~kL~ennI~-~IFAVt~~~~~~Y--~~L~~~ip~s~vg~L 352 (503)
T 3v4v_B 278 DGKLGGIFMPSDGHCHLDS-N-GLYSRSTEFDYPSVGQVAQALSAANIQ-PIFAVTSAALPVY--QELSKLIPKSAVGEL 352 (503)
T ss_dssp GGGTTTCCSCCCSSCCBCT-T-SBBGGGGGSCCCCHHHHHHHHHHHTEE-EEEEECSSSHHHH--HHHHTTSTTCEEEEC
T ss_pred CccccceecCCCCCeEECC-C-CccccccccCCCCHHHHHHHHHhcCCe-EEEEEcccchhHH--HHHHHhCCCceeeEc
Confidence 8777432 1223322111 0 1111 1223457788888888884 3677776655433 3444433 3444444
Q ss_pred CCCCcchhHHHHHHHHHhhcccccccceEEEEEe-CCCceEeeee--cCcc-cC--CCCceEeccCCCCCcEEEEEeec
Q 003269 643 PSFQSTTHGERLRHELSRDLTRETAWEAVMRIRC-GKGVRFTNYH--GNFM-LR--STDLLALPAVDCDKAYAMQLSLE 715 (835)
Q Consensus 643 ~~F~~~~d~~~L~~dL~r~l~r~~g~~a~mrVR~-S~Gl~V~~~~--Gnf~-~r--s~~~~~l~~id~d~Sia~~f~~d 715 (835)
.. ++.+.-.|..+-++.|. -.+.|+... .++++|+-.- ++.. .. ....-...++.-.+++.|++++.
T Consensus 353 s~--dSsNiv~LI~~aY~~i~----S~V~l~~~~~p~~l~v~y~s~C~~~~~~~~~~~~~~~C~~v~ig~~v~F~v~v~ 425 (503)
T 3v4v_B 353 SE--DSSNVVQLIMDAYNSLS----STVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQ 425 (503)
T ss_dssp CT--TSCTHHHHHHHHHHHHH----TCEEEECCCCCTTEEEEBCEECSSSCCCCCCCBSSEEECSCCTTCEEEEEEEEE
T ss_pred cc--cchhHHHHHHHHHHHhh----eEEEEecCCCCCceEEEEEEecCCCCccCcccccCCcccCcccCCEEEEEEEEE
Confidence 32 22344556555555543 234444332 5677766331 1110 00 01123455566667777776654
No 42
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.42 E-value=0.029 Score=64.93 Aligned_cols=108 Identities=12% Similarity=0.204 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEecchhHHhh--c-hHHHHHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccc
Q 003269 424 PPMPPLYFFLIDVSISAIRS--G-MLEVVAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDI 500 (835)
Q Consensus 424 ~p~pp~yvFvIDvS~~av~s--G-~l~~~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~ 500 (835)
+..+..++|+||+|.++... | -+.....++...+..+..+ .+||||+|++.+...
T Consensus 365 ~~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~--d~vglv~Fs~~~~~~-------------------- 422 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTE--KDSHMVAFSDEMLPC-------------------- 422 (538)
T ss_dssp CCCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHC--SSEEEEEESSSEECC--------------------
T ss_pred CCCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccC--CceEEEEECCCceEc--------------------
Confidence 35667899999999987531 1 0222111112222222222 479999998643211
Q ss_pred cCCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcCCEEEEEecCCCCCC
Q 003269 501 FVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSLG 569 (835)
Q Consensus 501 f~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~G 569 (835)
|+..+ .. |..+|+.|..+ ...++.++.||..|... +.....||++++|..+.|
T Consensus 423 --~~t~~--------~~-l~~~l~~l~~~----~~GgT~i~~aL~~a~~~-~~~~~~iIliTDg~~~~g 475 (538)
T 1yvr_A 423 --PITVN--------ML-LHEVVEKMSDI----TMGSTDCALPMLWAQKT-NTAADIFIVFTDCETNVE 475 (538)
T ss_dssp --SCCTT--------SC-HHHHHHHHTTC----CCSCCCTTHHHHHHHHT-TCCCSEEEEEECCCCCSS
T ss_pred --CCCCc--------cc-HHHHHHHHhcC----CCCCCcHHHHHHHHHhc-cCCCCEEEEEcCCCCCCC
Confidence 11110 01 33445555432 12457788899988765 334578888888875543
No 43
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=91.96 E-value=2 Score=43.88 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=63.3
Q ss_pred EEEEEEecchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeEEEEecCCCCCCCceeeecccccccCCCCCC
Q 003269 429 LYFFLIDVSISAIRSGMLEVVAQTIKSCLDELPG-FPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISDLDDIFVPLPDD 507 (835)
Q Consensus 429 ~yvFvIDvS~~av~sG~l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsDldd~f~Pl~~~ 507 (835)
-.+||+|+|.++-. .++.+++.+.+.++.|.+ ..+.||||.+|-+. . | +
T Consensus 5 Dl~fl~D~S~SM~~--di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk-~-~---------~----------------- 54 (212)
T 2iue_A 5 DLYFLMGLSGSAQG--HLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM-T-F---------Q----------------- 54 (212)
T ss_dssp EEEEEEECCGGGTT--THHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS-C-E---------E-----------------
T ss_pred EEEEEEeCCCcchh--HHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC-c-c---------e-----------------
Confidence 47999999999842 355555555544444421 23489999999433 0 0 0
Q ss_pred cccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHH--HH--HhcCCEEEEEecCCCCC--Cccccc
Q 003269 508 LLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFM--VM--SRLGGKLLIFQNSLPSL--GVGCLK 574 (835)
Q Consensus 508 lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~--lL--~~~GGkIivF~sg~Pt~--GpG~L~ 574 (835)
..+++.+..+.+.+.++++. ...+...+|..+.+-+++++. -+ +. .-|+++|.+-.+-. |-|++.
T Consensus 55 ~~l~lT~d~~~F~~~v~~~~-vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~ 125 (212)
T 2iue_A 55 HILKLTADSSQFQRELRKQL-VSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLG 125 (212)
T ss_dssp EEEEEESCHHHHHHHHHTCC-CCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGG
T ss_pred ecCCcCCCHHHHHHHHhhcc-ccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCcccc
Confidence 01223333444555666642 222234566666555555531 12 23 67999998877754 456553
No 44
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=90.74 E-value=0.48 Score=54.84 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=57.0
Q ss_pred CCCCCEEEEEEecchhHHhhch-----HHH--HHHHHHHHHhcCCCCCCceEEEEEEcCeEEEEecCCCCCCCceeeecc
Q 003269 424 PPMPPLYFFLIDVSISAIRSGM-----LEV--VAQTIKSCLDELPGFPRTQIGFITFDSTIHFYNMKSSLTQPQMMVISD 496 (835)
Q Consensus 424 ~p~pp~yvFvIDvS~~av~sG~-----l~~--~~~sI~~~L~~Lp~~~rt~VGiITFds~V~fynl~~~~~~pqmlVvsD 496 (835)
++..-.++++||+|.++...+. +.. +..+|. +-.+..+ .+|+||+|++.+....+..
T Consensus 359 ~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r~~--d~v~lv~Fs~~~~~~~~~~------------ 422 (535)
T 2nvo_A 359 QPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALRTE--PDALTMGFAEQFRPLGITP------------ 422 (535)
T ss_dssp CCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHHHS--SEEEEEEEBSSEEECCCCT------------
T ss_pred CCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcCcC--CceEEEEECCcceEcCCCc------------
Confidence 3456789999999998753111 111 111221 2122222 4899999987543322111
Q ss_pred cccccCCCCCCcccchhhhHHHHHHHHhhCCccccCCCCcccchHHHHHHHHHHHHhcCCEEEEEecCCCCC
Q 003269 497 LDDIFVPLPDDLLVNLSESRSVVDTLLDSLPSMFQDNMNVESAFGPALKAAFMVMSRLGGKLLIFQNSLPSL 568 (835)
Q Consensus 497 ldd~f~Pl~~~lLv~l~esr~~I~~lLd~L~~~~~~~~~~~~alG~AL~aA~~lL~~~GGkIivF~sg~Pt~ 568 (835)
+ +.|..+|+.|.... ..++.++.||..+.... .....||+++++--+.
T Consensus 423 ---------~----------~~l~~~l~~l~~~~----~ggTdi~~~l~~a~~~~-~~~~~vIliTD~~~~~ 470 (535)
T 2nvo_A 423 ---------R----------DTLESAMQKAQSVS----FGGTDCAQPILWAAQER-LDVDTFVVYTDNETWA 470 (535)
T ss_dssp ---------T----------CCHHHHHHHTCCSS----BCCCCTTHHHHHHHHTT-CCCSEEEEEESSCCCC
T ss_pred ---------c----------hhHHHHHHHHhhCC----CCCccHHHHHHHHHHhc-CCCCEEEEEeCCCccC
Confidence 0 11234566664432 23566788887764432 2357888888876444
No 45
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=66.73 E-value=1.3 Score=37.85 Aligned_cols=19 Identities=32% Similarity=0.976 Sum_probs=16.8
Q ss_pred ceEEEcCCCCCCCCCcccc
Q 003269 371 RKWRCNICALLNDVPGDYF 389 (835)
Q Consensus 371 ~~W~Cn~C~~~N~vP~~Y~ 389 (835)
-.|+|.+|...|.++.+|.
T Consensus 16 ~tWVCpICsfsN~v~s~fd 34 (76)
T 2j9u_B 16 STWVCPICMVSNETQGEFT 34 (76)
T ss_dssp EEEECTTTCCEEEESSCCC
T ss_pred cceECccccccCcCccccC
Confidence 5899999999999998763
No 46
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=57.73 E-value=26 Score=36.41 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCeEEEEEEecC-C---ccChhhhhhhccccccEEEEeC
Q 003269 600 KQMAADLTKFQIAVNVYAFSD-K---YTDIASLGTLAKYTGGQVYYYP 643 (835)
Q Consensus 600 k~La~~~~~~gIsVDlF~~s~-~---~vdiatL~~L~~~TGG~v~~y~ 643 (835)
.+.|+.+.+.||.|+.+.+.. + .-|..+|..++..|||+.|+..
T Consensus 28 ~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~ 75 (242)
T 3rag_A 28 VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQ 75 (242)
T ss_dssp HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEee
Confidence 467888999999999998843 2 3567899999999999999874
No 47
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=45.24 E-value=8.9 Score=29.71 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=10.1
Q ss_pred ceEEEcCCCCCCC
Q 003269 371 RKWRCNICALLND 383 (835)
Q Consensus 371 ~~W~Cn~C~~~N~ 383 (835)
++|+|.+||+.-+
T Consensus 3 ~~y~C~vCGyvyd 15 (46)
T 6rxn_A 3 QKYVCNVCGYEYD 15 (46)
T ss_dssp CCEEETTTCCEEC
T ss_pred CEEECCCCCeEEe
Confidence 5799999997643
No 48
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=41.39 E-value=13 Score=29.55 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=10.4
Q ss_pred ceEEEcCCCCCCC
Q 003269 371 RKWRCNICALLND 383 (835)
Q Consensus 371 ~~W~Cn~C~~~N~ 383 (835)
++|+|..||+.-+
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4799999998754
No 49
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=41.30 E-value=32 Score=32.01 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCC-CCCceEEEEEEcCeE
Q 003269 446 LEVVAQTIKSCLDELPG-FPRTQIGFITFDSTI 477 (835)
Q Consensus 446 l~~~~~sI~~~L~~Lp~-~~rt~VGiITFds~V 477 (835)
.+.++++|++.+..-|. ..+++|-+++||..|
T Consensus 112 Ae~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V 144 (147)
T 1b3t_A 112 AEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGV 144 (147)
T ss_dssp HHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCc
Confidence 36788888888877654 346899999999876
No 50
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=39.57 E-value=12 Score=31.59 Aligned_cols=13 Identities=23% Similarity=0.882 Sum_probs=10.1
Q ss_pred ceEEEcCCCCCCC
Q 003269 371 RKWRCNICALLND 383 (835)
Q Consensus 371 ~~W~Cn~C~~~N~ 383 (835)
.+|+|..|++.-+
T Consensus 6 ~~y~C~vCGyiYd 18 (70)
T 1dx8_A 6 GKYECEACGYIYE 18 (70)
T ss_dssp SCEEETTTCCEEC
T ss_pred ceEEeCCCCEEEc
Confidence 5799999997644
No 51
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=35.54 E-value=14 Score=29.19 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=9.3
Q ss_pred ceEEEcCCCCCC
Q 003269 371 RKWRCNICALLN 382 (835)
Q Consensus 371 ~~W~Cn~C~~~N 382 (835)
++|+|..||+.-
T Consensus 1 ~~~~C~~CGyvY 12 (52)
T 1yk4_A 1 AKLSCKICGYIY 12 (52)
T ss_dssp CEEEESSSSCEE
T ss_pred CcEEeCCCCeEE
Confidence 479999999763
No 52
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=35.11 E-value=14 Score=29.68 Aligned_cols=12 Identities=42% Similarity=1.425 Sum_probs=9.6
Q ss_pred ceEEEcCCCCCC
Q 003269 371 RKWRCNICALLN 382 (835)
Q Consensus 371 ~~W~Cn~C~~~N 382 (835)
++|+|..||+.-
T Consensus 2 ~~y~C~~CGyvY 13 (55)
T 2v3b_B 2 RKWQCVVCGFIY 13 (55)
T ss_dssp CEEEETTTCCEE
T ss_pred CcEEeCCCCeEE
Confidence 479999999763
No 53
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=34.86 E-value=13 Score=32.15 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.3
Q ss_pred CceEEEcCCCCCC
Q 003269 370 GRKWRCNICALLN 382 (835)
Q Consensus 370 G~~W~Cn~C~~~N 382 (835)
-.+|+|.+||+.-
T Consensus 25 m~~y~C~vCGyvY 37 (81)
T 2kn9_A 25 YKLFRCIQCGFEY 37 (81)
T ss_dssp CCEEEETTTCCEE
T ss_pred cceEEeCCCCEEE
Confidence 3689999999764
No 54
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.55 E-value=16 Score=29.74 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=17.7
Q ss_pred CCcceeecccceEeeCCceEEEcCCCC
Q 003269 354 FICRTYVNPYVTFTDAGRKWRCNICAL 380 (835)
Q Consensus 354 ~rCrAYiNPf~~f~~~G~~W~Cn~C~~ 380 (835)
.||++++.- ..+.-.|+||+|..
T Consensus 37 aRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 37 ARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp TTSEEEEES----STTCEEEEEHHHHH
T ss_pred cccCCEeee----cCCeEEEEehhhhh
Confidence 889998765 34556899999964
No 55
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=24.48 E-value=31 Score=27.59 Aligned_cols=12 Identities=25% Similarity=1.063 Sum_probs=9.5
Q ss_pred ceEEEcCCCCCC
Q 003269 371 RKWRCNICALLN 382 (835)
Q Consensus 371 ~~W~Cn~C~~~N 382 (835)
++|+|.+|++.-
T Consensus 2 ~~y~C~vCGyvY 13 (54)
T 4rxn_A 2 KKYTCTVCGYIY 13 (54)
T ss_dssp CCEEETTTCCEE
T ss_pred CceECCCCCeEE
Confidence 579999999753
No 56
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.44 E-value=26 Score=30.71 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=9.3
Q ss_pred CceEEEcCCCCC
Q 003269 370 GRKWRCNICALL 381 (835)
Q Consensus 370 G~~W~Cn~C~~~ 381 (835)
-.+|+|..||+.
T Consensus 33 m~~y~C~vCGyv 44 (87)
T 1s24_A 33 YLKWICITCGHI 44 (87)
T ss_dssp CCEEEETTTTEE
T ss_pred CceEECCCCCeE
Confidence 367999999865
Done!