Query 003270
Match_columns 835
No_of_seqs 374 out of 4204
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 20:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.9E-42 8.4E-47 417.3 27.0 241 63-326 49-301 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-40 4.6E-45 402.1 27.1 524 123-812 69-609 (968)
3 KOG4194 Membrane glycoprotein 99.9 5.3E-27 1.1E-31 239.1 7.6 344 240-664 81-427 (873)
4 KOG4194 Membrane glycoprotein 99.9 2.5E-26 5.5E-31 234.2 5.5 359 192-636 79-447 (873)
5 KOG0472 Leucine-rich repeat pr 99.9 8.4E-28 1.8E-32 234.3 -10.6 450 95-665 65-540 (565)
6 KOG0472 Leucine-rich repeat pr 99.9 6.2E-27 1.3E-31 228.3 -11.8 452 123-664 45-516 (565)
7 KOG0444 Cytoskeletal regulator 99.9 1.6E-25 3.5E-30 229.7 -3.2 367 97-614 6-376 (1255)
8 KOG0444 Cytoskeletal regulator 99.9 1.5E-24 3.1E-29 222.8 -4.8 130 123-274 7-137 (1255)
9 KOG0618 Serine/threonine phosp 99.9 3.1E-24 6.7E-29 231.2 -3.3 451 115-665 13-488 (1081)
10 KOG0618 Serine/threonine phosp 99.9 2E-24 4.3E-29 232.7 -6.0 245 128-432 3-252 (1081)
11 PLN03210 Resistant to P. syrin 99.8 1.6E-18 3.6E-23 210.5 19.9 342 139-566 550-907 (1153)
12 PLN03210 Resistant to P. syrin 99.8 6.3E-18 1.4E-22 205.4 21.0 341 232-639 553-904 (1153)
13 KOG4341 F-box protein containi 99.8 1.1E-18 2.4E-23 172.5 8.5 72 205-276 158-229 (483)
14 KOG2120 SCF ubiquitin ligase, 99.7 5.2E-17 1.1E-21 153.3 9.1 236 42-320 105-349 (419)
15 KOG4341 F-box protein containi 99.7 2.6E-17 5.6E-22 162.9 5.0 275 524-827 162-456 (483)
16 cd00116 LRR_RI Leucine-rich re 99.6 6.5E-15 1.4E-19 155.8 16.3 177 82-273 7-203 (319)
17 KOG4237 Extracellular matrix p 99.5 6.4E-16 1.4E-20 151.8 -2.2 206 570-809 267-476 (498)
18 cd00116 LRR_RI Leucine-rich re 99.5 2.4E-13 5.2E-18 143.8 16.5 222 75-300 25-293 (319)
19 PRK15387 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 156.0 11.8 33 752-785 423-458 (788)
20 KOG4237 Extracellular matrix p 99.5 9.1E-16 2E-20 150.7 -4.6 126 98-224 67-201 (498)
21 PRK15387 E3 ubiquitin-protein 99.4 4.5E-13 9.8E-18 150.8 12.5 256 309-664 201-456 (788)
22 PRK15370 E3 ubiquitin-protein 99.3 3.8E-12 8.2E-17 144.5 10.6 225 526-809 199-427 (754)
23 PRK15370 E3 ubiquitin-protein 99.2 6.6E-11 1.4E-15 134.5 13.8 124 496-642 305-429 (754)
24 KOG1909 Ran GTPase-activating 99.2 8.6E-11 1.9E-15 114.8 10.1 228 90-321 22-310 (382)
25 KOG0617 Ras suppressor protein 99.2 8E-13 1.7E-17 114.9 -4.1 154 491-664 29-184 (264)
26 KOG0617 Ras suppressor protein 99.2 7.3E-13 1.6E-17 115.1 -4.4 114 491-616 75-188 (264)
27 KOG1909 Ran GTPase-activating 99.1 8.2E-10 1.8E-14 108.0 10.7 230 65-297 22-310 (382)
28 KOG2120 SCF ubiquitin ligase, 99.0 1.7E-10 3.8E-15 109.7 3.5 191 90-319 176-373 (419)
29 KOG3207 Beta-tubulin folding c 99.0 4.6E-10 9.9E-15 112.8 4.8 183 572-785 141-339 (505)
30 KOG4658 Apoptotic ATPase [Sign 98.9 5.2E-09 1.1E-13 121.3 11.1 339 77-437 402-786 (889)
31 KOG3207 Beta-tubulin folding c 98.8 5.4E-10 1.2E-14 112.3 0.3 129 188-321 169-313 (505)
32 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.3E-14 97.3 5.2 106 551-662 41-149 (175)
33 PF14580 LRR_9: Leucine-rich r 98.8 4.3E-09 9.3E-14 97.0 5.5 133 491-638 15-150 (175)
34 KOG1259 Nischarin, modulator o 98.8 4E-09 8.6E-14 100.6 5.2 135 520-666 278-412 (490)
35 KOG1947 Leucine rich repeat pr 98.7 1.5E-08 3.3E-13 114.1 7.2 250 525-821 187-451 (482)
36 KOG1947 Leucine rich repeat pr 98.6 8.1E-08 1.8E-12 108.2 7.6 258 526-830 161-434 (482)
37 KOG1259 Nischarin, modulator o 98.6 4.1E-08 8.9E-13 93.8 3.6 83 574-664 281-363 (490)
38 COG5238 RNA1 Ran GTPase-activa 98.5 8.3E-07 1.8E-11 84.0 10.9 182 89-273 21-252 (388)
39 KOG4658 Apoptotic ATPase [Sign 98.5 1.6E-07 3.5E-12 109.1 7.5 125 121-245 543-676 (889)
40 KOG0532 Leucine-rich repeat (L 98.4 2.8E-08 6.1E-13 103.4 -2.7 153 491-665 94-246 (722)
41 PF13855 LRR_8: Leucine rich r 98.3 4.1E-07 8.8E-12 68.5 1.9 58 578-639 2-60 (61)
42 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 98.9 7.5 101 74-184 403-503 (623)
43 PF13855 LRR_8: Leucine rich r 98.2 8E-07 1.7E-11 66.9 3.3 61 123-183 1-61 (61)
44 KOG2982 Uncharacterized conser 98.2 2E-06 4.3E-11 82.6 5.7 206 554-810 47-262 (418)
45 PLN03150 hypothetical protein; 98.2 3.1E-06 6.7E-11 96.5 8.1 108 554-667 420-529 (623)
46 COG4886 Leucine-rich repeat (L 98.2 2.2E-06 4.7E-11 93.4 6.3 189 127-326 97-294 (394)
47 KOG1859 Leucine-rich repeat pr 98.1 2E-07 4.3E-12 99.9 -2.9 127 526-665 164-291 (1096)
48 KOG3665 ZYG-1-like serine/thre 98.1 6.6E-06 1.4E-10 93.3 8.2 147 123-270 122-282 (699)
49 KOG2982 Uncharacterized conser 98.1 3.5E-06 7.7E-11 81.0 5.0 186 120-324 68-264 (418)
50 COG4886 Leucine-rich repeat (L 98.0 2.6E-06 5.7E-11 92.7 3.7 150 496-666 141-290 (394)
51 KOG0532 Leucine-rich repeat (L 98.0 4.4E-07 9.6E-12 94.8 -2.7 127 497-639 145-271 (722)
52 COG5238 RNA1 Ran GTPase-activa 97.9 0.00013 2.8E-09 69.6 10.5 197 75-273 32-282 (388)
53 KOG3665 ZYG-1-like serine/thre 97.8 2E-05 4.3E-10 89.5 6.1 137 524-664 146-286 (699)
54 PRK15386 type III secretion pr 97.7 8.7E-05 1.9E-09 77.3 6.9 40 391-438 50-89 (426)
55 PF12799 LRR_4: Leucine Rich r 97.7 5.2E-05 1.1E-09 52.0 3.5 38 577-615 1-38 (44)
56 KOG0531 Protein phosphatase 1, 97.5 9.9E-06 2.1E-10 88.2 -2.0 83 573-664 114-197 (414)
57 PRK15386 type III secretion pr 97.5 0.00017 3.7E-09 75.2 6.9 75 571-662 46-121 (426)
58 KOG0531 Protein phosphatase 1, 97.5 1.5E-05 3.3E-10 86.8 -1.3 123 121-248 70-197 (414)
59 KOG1859 Leucine-rich repeat pr 97.4 1.1E-05 2.4E-10 87.0 -3.5 117 100-222 166-290 (1096)
60 PF12799 LRR_4: Leucine Rich r 97.2 0.00072 1.6E-08 46.3 4.3 37 123-160 1-37 (44)
61 KOG1644 U2-associated snRNP A' 97.1 0.00055 1.2E-08 62.7 4.2 60 124-185 43-102 (233)
62 KOG1644 U2-associated snRNP A' 97.0 0.00096 2.1E-08 61.2 5.1 111 526-642 42-154 (233)
63 KOG2739 Leucine-rich acidic nu 97.0 0.00029 6.3E-09 67.5 1.3 114 544-663 35-153 (260)
64 KOG2123 Uncharacterized conser 96.8 0.00019 4.2E-09 68.7 -1.3 99 171-270 19-124 (388)
65 KOG2123 Uncharacterized conser 96.8 0.00026 5.7E-09 67.8 -0.8 82 525-613 18-101 (388)
66 KOG4579 Leucine-rich repeat (L 96.6 0.00056 1.2E-08 58.4 0.5 107 528-641 29-136 (177)
67 KOG4579 Leucine-rich repeat (L 96.5 0.0012 2.6E-08 56.4 1.2 103 554-663 29-133 (177)
68 KOG3864 Uncharacterized conser 96.4 0.0025 5.3E-08 58.7 3.3 80 193-273 103-186 (221)
69 KOG3864 Uncharacterized conser 96.2 0.0021 4.6E-08 59.1 1.4 66 522-587 121-186 (221)
70 KOG2739 Leucine-rich acidic nu 95.8 0.0066 1.4E-07 58.5 3.0 35 577-611 91-127 (260)
71 PF13306 LRR_5: Leucine rich r 95.7 0.012 2.6E-07 52.2 4.0 37 571-608 52-89 (129)
72 smart00367 LRR_CC Leucine-rich 95.3 0.016 3.5E-07 34.4 2.4 24 796-819 1-24 (26)
73 PF13306 LRR_5: Leucine rich r 95.3 0.015 3.2E-07 51.7 3.1 104 548-662 8-112 (129)
74 KOG4308 LRR-containing protein 95.1 0.0021 4.5E-08 70.1 -3.3 113 551-664 203-329 (478)
75 PF00560 LRR_1: Leucine Rich R 94.0 0.019 4.2E-07 32.5 0.5 21 578-598 1-21 (22)
76 PF13504 LRR_7: Leucine rich r 92.3 0.094 2E-06 27.4 1.4 15 578-592 2-16 (17)
77 smart00367 LRR_CC Leucine-rich 91.7 0.26 5.6E-06 29.2 3.1 24 236-259 1-24 (26)
78 PF00560 LRR_1: Leucine Rich R 90.2 0.13 2.7E-06 29.1 0.7 12 125-136 2-13 (22)
79 KOG4308 LRR-containing protein 89.8 0.072 1.6E-06 58.3 -1.0 171 491-666 111-303 (478)
80 PF13516 LRR_6: Leucine Rich r 89.4 0.26 5.5E-06 28.5 1.6 18 772-789 2-19 (24)
81 PF13516 LRR_6: Leucine Rich r 87.0 0.5 1.1E-05 27.3 1.8 22 237-259 2-23 (24)
82 smart00368 LRR_RI Leucine rich 82.7 2.3 4.9E-05 25.7 3.3 23 237-260 2-24 (28)
83 PF12937 F-box-like: F-box-lik 82.1 0.32 7E-06 33.9 -0.6 33 48-80 14-46 (47)
84 smart00369 LRR_TYP Leucine-ric 81.5 1.2 2.6E-05 26.3 1.8 20 576-595 1-20 (26)
85 smart00370 LRR Leucine-rich re 81.5 1.2 2.6E-05 26.3 1.8 20 576-595 1-20 (26)
86 smart00368 LRR_RI Leucine rich 80.4 2 4.3E-05 25.9 2.5 20 772-791 2-21 (28)
87 KOG3763 mRNA export factor TAP 63.5 9 0.00019 41.7 4.2 81 189-271 216-309 (585)
88 smart00256 FBOX A Receptor for 61.3 6.9 0.00015 25.8 2.0 28 50-77 13-40 (41)
89 smart00364 LRR_BAC Leucine-ric 61.1 4.4 9.6E-05 23.9 0.8 18 577-594 2-19 (26)
90 smart00365 LRR_SD22 Leucine-ri 60.2 6 0.00013 23.4 1.3 15 577-591 2-16 (26)
91 KOG3763 mRNA export factor TAP 59.5 7.2 0.00016 42.4 2.7 13 749-761 242-254 (585)
92 KOG0473 Leucine-rich repeat pr 42.3 1.7 3.7E-05 41.4 -4.4 86 94-183 38-123 (326)
93 KOG0473 Leucine-rich repeat pr 33.8 4.8 0.0001 38.5 -2.9 85 522-611 38-122 (326)
94 PF08263 LRRNT_2: Leucine rich 31.3 6.8 0.00015 26.5 -1.8 21 61-81 22-43 (43)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.9e-42 Score=417.32 Aligned_cols=241 Identities=19% Similarity=0.224 Sum_probs=162.6
Q ss_pred HHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHh
Q 003270 63 WQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHA 142 (835)
Q Consensus 63 ~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 142 (835)
..|. ...+.|.|.++.|++.+ +++.|++++ +.+.+..+..+..+++|+.|++++|.+.+.+|..
T Consensus 49 ~~w~-~~~~~c~w~gv~c~~~~--------------~v~~L~L~~-~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~ 112 (968)
T PLN00113 49 SNWN-SSADVCLWQGITCNNSS--------------RVVSIDLSG-KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112 (968)
T ss_pred CCCC-CCCCCCcCcceecCCCC--------------cEEEEEecC-CCccccCChHHhCCCCCCEEECCCCccCCcCChH
Confidence 4684 34568899999986432 799999999 5677777889999999999999999999888876
Q ss_pred hc-CCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccc----ccCCCCCcEEEecccchH----HHhhcCCCC
Q 003270 143 LA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV----SIRCPQLEHLSLKRSNMA----QAVLNCPLL 213 (835)
Q Consensus 143 l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~i~----~~~~~~~~L 213 (835)
+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+... ..++++|++|++++|.+. ..+.++++|
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred HhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 55 899999999999999887775 4577888888888776421 234666666666666543 445566666
Q ss_pred cEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEe
Q 003270 214 HLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQ 290 (835)
Q Consensus 214 ~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~ 290 (835)
++|++++|. +. +.+|..++++++|++|++++|. +.+..+..+. .+++|++|++++|. .+|..++.+++|++|+
T Consensus 191 ~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 191 EFLTLASNQ-LV-GQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CeeeccCCC-Cc-CcCChHHcCcCCccEEECcCCc-cCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 666666653 33 2345556666666666666665 5545555554 56666666666654 3455555566666666
Q ss_pred cCCCCCCChhhHHHhhhccCccEEEccCCCcccccc
Q 003270 291 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 291 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
+++| .+.+..+..+..+++|++|++++|.+.+.+|
T Consensus 267 L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 267 LYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CcCC-eeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 6554 4444455555555566666665555444333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-40 Score=402.11 Aligned_cols=524 Identities=18% Similarity=0.189 Sum_probs=330.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccc-cCCcccEEeccCcccccc-c-cCCCCCcEEEec
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI-NHDQLRRLEITKCRVMRV-S-IRCPQLEHLSLK 199 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~-~-~~l~~L~~L~l~ 199 (835)
.+++.|++++|.+.+.++.++..+++|++|++++|.+.+.+|..+. .+.+|++|++++|.+... . ..+++|++|+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 4789999999999999999999999999999999999888887544 888999999998877532 1 246667777777
Q ss_pred ccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC-
Q 003270 200 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP- 274 (835)
Q Consensus 200 ~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~- 274 (835)
+|.+. ..++++++|++|++++|. +. +.+|..+.++++|++|++++|. +.+..+..+. .+++|+.|++++|.
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l 224 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNV-LV-GKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELG-QMKSLKWIYLGYNNL 224 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCc-cc-ccCChhhhhCcCCCeeeccCCC-CcCcCChHHc-CcCCccEEECcCCcc
Confidence 66553 345666666666666663 32 2345556666666666666666 4444444444 55666666666554
Q ss_pred --CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccc
Q 003270 275 --NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMM 352 (835)
Q Consensus 275 --~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~ 352 (835)
.+|..++.+++|++|++.+| .+.+..+..++.+++|++|++++|.+.+.+|..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------------------------ 279 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS------------------------ 279 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchh------------------------
Confidence 34444455555555555554 444444444555555555555555443332221
Q ss_pred cceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 353 LSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 353 l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+.++++|++|++++|.+.+..+.... .+++|+.|++++ +.+++..|..+ ..+++|+.|++++|.
T Consensus 280 -----l~~l~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~l~~-n~~~~~~~~~~---~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 280 -----IFSLQKLISLDLSDNSLSGEIPELVI-------QLQNLEILHLFS-NNFTGKIPVAL---TSLPRLQVLQLWSNK 343 (968)
T ss_pred -----HhhccCcCEEECcCCeeccCCChhHc-------CCCCCcEEECCC-CccCCcCChhH---hcCCCCCEEECcCCC
Confidence 23334444455555544443222111 234555555555 34444444433 344555555554443
Q ss_pred CCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEee
Q 003270 433 GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLEL 512 (835)
Q Consensus 433 ~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~ 512 (835)
+. +.+|.. +..+++|+.+++++|.+.
T Consensus 344 -l~--------------------------------------------~~~p~~-----l~~~~~L~~L~Ls~n~l~---- 369 (968)
T PLN00113 344 -FS--------------------------------------------GEIPKN-----LGKHNNLTVLDLSTNNLT---- 369 (968)
T ss_pred -Cc--------------------------------------------CcCChH-----HhCCCCCcEEECCCCeeE----
Confidence 11 112222 455677777777777775
Q ss_pred cCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-
Q 003270 513 KGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN- 591 (835)
Q Consensus 513 ~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~- 591 (835)
+.+|..+..+++|+.|++++|. +. +.++..+..+++|+.|++++|+..+.. +..+..+++|+.|++++|.+++
T Consensus 370 ---~~~p~~~~~~~~L~~L~l~~n~-l~-~~~p~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 370 ---GEIPEGLCSSGNLFKLILFSNS-LE-GEIPKSLGACRSLRRVRLQDNSFSGEL-PSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred ---eeCChhHhCcCCCCEEECcCCE-ec-ccCCHHHhCCCCCCEEECcCCEeeeEC-ChhHhcCCCCCEEECcCCcccCc
Confidence 6667777777788888888873 32 346666777888888888888765443 6677788888888888888876
Q ss_pred chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCccccc
Q 003270 592 LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNW 671 (835)
Q Consensus 592 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 671 (835)
++..+..+++|+.|++++|+ +.+..+.. ...++|+.|++++|++++ .++..+..+++|++|++++|......
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~-~~~~~p~~----~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 515 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNK-FFGGLPDS----FGSKRLENLDLSRNQFSG-AVPRKLGSLSELMQLKLSENKLSGEI-- 515 (968)
T ss_pred cChhhccCCCCcEEECcCce-eeeecCcc----cccccceEEECcCCccCC-ccChhhhhhhccCEEECcCCcceeeC--
Confidence 45566777888888888887 55444433 235678888888888876 56677777888888888887521111
Q ss_pred cccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCC---cccccc
Q 003270 672 GASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSAN---LKEVDV 748 (835)
Q Consensus 672 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---l~~~~~ 748 (835)
...+..+++|+.|+++++.- ++....
T Consensus 516 ---------------------------------------------------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 516 ---------------------------------------------------PDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ---------------------------------------------------ChHHcCccCCCEEECCCCcccccCChhHh
Confidence 11244556677777766532 223344
Q ss_pred ccccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCCc
Q 003270 749 ACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICS 812 (835)
Q Consensus 749 ~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~~ 812 (835)
.+++|++|++++|.....+|. .+++|+.|++++|++. ..+|. ...+..+....+.+|+.+|.
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~-~~~p~-~~~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH-GSLPS-TGAFLAINASAVAGNIDLCG 609 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce-eeCCC-cchhcccChhhhcCCccccC
Confidence 678888899998887666664 4678888999988875 44554 23344556666778777664
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.3e-27 Score=239.11 Aligned_cols=344 Identities=21% Similarity=0.209 Sum_probs=214.5
Q ss_pred CEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEcc
Q 003270 240 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 317 (835)
Q Consensus 240 ~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 317 (835)
+.|++++|. +.+..+..+. ++++|+++++.+|. .+|.......+|+.|++..+ .+.......++.++.|+.||++
T Consensus 81 ~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccc-cccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 346666666 5555555554 66677777776665 56666666667888888775 6776666778888889999998
Q ss_pred CCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccE
Q 003270 318 NCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQE 397 (835)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~ 397 (835)
.|.+....-.. +..-.++++|++++|.++.+....++++ .+|..
T Consensus 158 rN~is~i~~~s-----------------------------fp~~~ni~~L~La~N~It~l~~~~F~~l-------nsL~t 201 (873)
T KOG4194|consen 158 RNLISEIPKPS-----------------------------FPAKVNIKKLNLASNRITTLETGHFDSL-------NSLLT 201 (873)
T ss_pred hchhhcccCCC-----------------------------CCCCCCceEEeecccccccccccccccc-------chhee
Confidence 88643321111 2333456666666666666544444333 46666
Q ss_pred EecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcc
Q 003270 398 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIE 477 (835)
Q Consensus 398 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~ 477 (835)
|.++. |+++...+..| ..+++|+.|++..+. +..+ +.+.+.++++++.+.+.-+.+..|+=.-
T Consensus 202 lkLsr-NrittLp~r~F---k~L~~L~~LdLnrN~-iriv-------e~ltFqgL~Sl~nlklqrN~I~kL~DG~----- 264 (873)
T KOG4194|consen 202 LKLSR-NRITTLPQRSF---KRLPKLESLDLNRNR-IRIV-------EGLTFQGLPSLQNLKLQRNDISKLDDGA----- 264 (873)
T ss_pred eeccc-CcccccCHHHh---hhcchhhhhhccccc-eeee-------hhhhhcCchhhhhhhhhhcCcccccCcc-----
Confidence 77777 56666655555 566777777776654 3322 1233444444444433333332222111
Q ss_pred ccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEE
Q 003270 478 SASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESL 557 (835)
Q Consensus 478 ~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L 557 (835)
|..|.+++.++++.|++. ..-..++-++++|+.|++|+| .+.. .-...+..++.|++|
T Consensus 265 -------------Fy~l~kme~l~L~~N~l~-------~vn~g~lfgLt~L~~L~lS~N-aI~r-ih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 265 -------------FYGLEKMEHLNLETNRLQ-------AVNEGWLFGLTSLEQLDLSYN-AIQR-IHIDSWSFTQKLKEL 322 (873)
T ss_pred -------------eeeecccceeecccchhh-------hhhcccccccchhhhhccchh-hhhe-eecchhhhcccceeE
Confidence 566677777777777764 222233456777777777776 3322 112335566777777
Q ss_pred eccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCC
Q 003270 558 ILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLS 636 (835)
Q Consensus 558 ~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~ 636 (835)
++++|+..... +.+|..+..|++|.|+.|.+..+.+ .|..+++|++|+|++|. +...+...-..+..+++|+.|++.
T Consensus 323 dLs~N~i~~l~-~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 323 DLSSNRITRLD-EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eccccccccCC-hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeec
Confidence 77777655443 5677788888888888888887665 67778888888888877 554333332334668888888888
Q ss_pred CcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 637 YGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 637 ~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+|++.. .....|.++..|++|++.+|+
T Consensus 401 gNqlk~-I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 401 GNQLKS-IPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred Cceeee-cchhhhccCcccceecCCCCc
Confidence 888766 455778888888888888876
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.5e-26 Score=234.20 Aligned_cols=359 Identities=19% Similarity=0.219 Sum_probs=195.5
Q ss_pred CCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcE
Q 003270 192 QLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRI 267 (835)
Q Consensus 192 ~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~ 267 (835)
.-+.|++++|.+. ..+.++++|+++++..| .++ .+|...+...+|+.|+|.+|. ++...-.++. .++.|+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~-~l~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNL-ISSVTSEELS-ALPALRS 153 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhh--hcccccccccceeEEeeeccc-cccccHHHHH-hHhhhhh
Confidence 3455777777665 56789999999999988 465 577776777789999999998 7766566665 7889999
Q ss_pred EecCCCC--CCCcc-ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeecccccccc
Q 003270 268 LNSSYCP--NISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFA 344 (835)
Q Consensus 268 L~l~~~~--~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~ 344 (835)
|||+.|. .++.. +..-.++++|++.++ .++......|..+.+|..|.+++|.+..-.+..|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F--------------- 217 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF--------------- 217 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHh---------------
Confidence 9999986 45543 334478888888886 7877777778888888888888887544333222
Q ss_pred chhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCcc
Q 003270 345 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLK 424 (835)
Q Consensus 345 ~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~ 424 (835)
+++++|+.|++..|.+.-.....+.+ +++|+.|.+.. |.+......+| .++.+++
T Consensus 218 --------------k~L~~L~~LdLnrN~irive~ltFqg-------L~Sl~nlklqr-N~I~kL~DG~F---y~l~kme 272 (873)
T KOG4194|consen 218 --------------KRLPKLESLDLNRNRIRIVEGLTFQG-------LPSLQNLKLQR-NDISKLDDGAF---YGLEKME 272 (873)
T ss_pred --------------hhcchhhhhhccccceeeehhhhhcC-------chhhhhhhhhh-cCcccccCcce---eeecccc
Confidence 23333333333333332221111111 13444444444 23332222233 3444445
Q ss_pred EEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccccccc
Q 003270 425 SLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 504 (835)
Q Consensus 425 ~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~ 504 (835)
.|++..+. +..+ .+-.+.|+..|+.+.++.+.++.+.++. ++.|++|+.|++++
T Consensus 273 ~l~L~~N~-l~~v-------n~g~lfgLt~L~~L~lS~NaI~rih~d~------------------WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 273 HLNLETNR-LQAV-------NEGWLFGLTSLEQLDLSYNAIQRIHIDS------------------WSFTQKLKELDLSS 326 (873)
T ss_pred eeecccch-hhhh-------hcccccccchhhhhccchhhhheeecch------------------hhhcccceeEeccc
Confidence 55444443 2211 1111222223333333333333333333 45555666666666
Q ss_pred ceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCc--hhhHhhhhcccccee
Q 003270 505 LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGP--DGLYSLRSLQNLTML 582 (835)
Q Consensus 505 ~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L 582 (835)
|+++.+ -+..|..+..|++|.+++|. +. .-....|.++.+|+.|++++|....- .+...|.++++|+.|
T Consensus 327 N~i~~l-------~~~sf~~L~~Le~LnLs~Ns-i~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 327 NRITRL-------DEGSFRVLSQLEELNLSHNS-ID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cccccC-------ChhHHHHHHHhhhhcccccc-hH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 655421 22344555556666666652 21 11223344555566666655553221 112345555666666
Q ss_pred eecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCC
Q 003270 583 DLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLS 636 (835)
Q Consensus 583 ~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~ 636 (835)
++.+|++..+|. +|.+++.|+.|+|.+|. |..+.+..+ ..+ .|++|.+.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAF---e~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAF---EPM-ELKELVMN 447 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCc-ceeeccccc---ccc-hhhhhhhc
Confidence 666666655554 55556666666666655 554444433 333 55555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=8.4e-28 Score=234.33 Aligned_cols=450 Identities=20% Similarity=0.203 Sum_probs=253.0
Q ss_pred hcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCccc
Q 003270 95 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 174 (835)
Q Consensus 95 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 174 (835)
+..+.++.+++++ +... ..|++++.+..++.++.++|++. .+|++++...+|+.++.++|.+. .+++.++.+..++
T Consensus 65 ~nL~~l~vl~~~~-n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 65 KNLACLTVLNVHD-NKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE 140 (565)
T ss_pred hcccceeEEEecc-chhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence 3444555555555 2222 24455555555555555555555 34555555555555555555543 2333344444444
Q ss_pred EEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHH
Q 003270 175 RLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254 (835)
Q Consensus 175 ~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~ 254 (835)
.++..+|++.... +.+.++.+|..+++.+| .++ ++|...-+++.|++||...|- ++ ..
T Consensus 141 dl~~~~N~i~slp-----------------~~~~~~~~l~~l~~~~n-~l~--~l~~~~i~m~~L~~ld~~~N~-L~-tl 198 (565)
T KOG0472|consen 141 DLDATNNQISSLP-----------------EDMVNLSKLSKLDLEGN-KLK--ALPENHIAMKRLKHLDCNSNL-LE-TL 198 (565)
T ss_pred hhhccccccccCc-----------------hHHHHHHHHHHhhcccc-chh--hCCHHHHHHHHHHhcccchhh-hh-cC
Confidence 4444444443322 45555555666666665 233 233333335666666665554 32 44
Q ss_pred HHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhh-hccCccEEEccCCCccccccccCcc
Q 003270 255 LREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLELPR 331 (835)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~ 331 (835)
|+.++ .+.+|..|++..|. .+| .+..|.-|++|+++.+ .....+.+.. ++.++..||+.+|+ ..+.|.++..
T Consensus 199 P~~lg-~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N--~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~cl 273 (565)
T KOG0472|consen 199 PPELG-GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN--QIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICL 273 (565)
T ss_pred Chhhc-chhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc--HHHhhHHHHhcccccceeeeccccc-cccCchHHHH
Confidence 55555 56666666666665 344 5566666666666653 2233333433 56666666666665 3445554433
Q ss_pred cceeeccccccccchhhccccccee--eeccCCCcceeeeccCccccchhh-----cchhhHHHHhhCCcccEEecCCCc
Q 003270 332 LQNIRLVHCRKFADLNLRAMMLSSI--MVSNCAALHRINITSNSLQKLSLQ-----KQENLTSLALQCQCLQEVDLTDCE 404 (835)
Q Consensus 332 L~~L~~~~~~~l~~l~l~~~~l~~~--~l~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~l~~~~~~L~~L~l~~c~ 404 (835)
+++ ++.++++.|.++++ .++++ .|+.|.+.+|.+....-. +..-++++. .
T Consensus 274 Lrs--------L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr-------s------- 330 (565)
T KOG0472|consen 274 LRS--------LERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR-------S------- 330 (565)
T ss_pred hhh--------hhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH-------H-------
Confidence 332 23345555555554 56666 677777777766543211 011111111 1
Q ss_pred CCchhhhh---------------hccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEe
Q 003270 405 SLTNSVCE---------------VFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVC 469 (835)
Q Consensus 405 ~l~~~~~~---------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~ 469 (835)
.+++.++. .+++....-+.+.|++++-. ++
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt---------------------------------- 375 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LT---------------------------------- 375 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cc----------------------------------
Confidence 11111111 11111111122222222211 11
Q ss_pred cCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcce-EecccCCCCccchhhhhh
Q 003270 470 LDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTS-LDASFCSQLKDDCLSATT 548 (835)
Q Consensus 470 l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~-L~ls~~~~l~~~~~~~~~ 548 (835)
.+|..+ .....-.-.+.++++.|++ .++|..+..+..+.. +.+++| .+ ++++..+
T Consensus 376 -----------~VPdEV--fea~~~~~Vt~VnfskNqL--------~elPk~L~~lkelvT~l~lsnn-~i--sfv~~~l 431 (565)
T KOG0472|consen 376 -----------LVPDEV--FEAAKSEIVTSVNFSKNQL--------CELPKRLVELKELVTDLVLSNN-KI--SFVPLEL 431 (565)
T ss_pred -----------cCCHHH--HHHhhhcceEEEecccchH--------hhhhhhhHHHHHHHHHHHhhcC-cc--ccchHHH
Confidence 112110 0011112245566666766 556665555555444 455554 33 4567777
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
..+++|..|++++|..-+. |..++.+..|+.|+++.|++..+|..+.....++.+-.++|+ +....+..+ .++.
T Consensus 432 ~~l~kLt~L~L~NN~Ln~L--P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l---~nm~ 505 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDL--PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGL---KNMR 505 (565)
T ss_pred Hhhhcceeeecccchhhhc--chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHh---hhhh
Confidence 8888888888888764332 778888888999999999999999988888888888888888 888777755 7899
Q ss_pred CccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 629 ALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 629 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
+|..||+.+|.+.. +|..+++|++|++|++.||+.
T Consensus 506 nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hcceeccCCCchhh--CChhhccccceeEEEecCCcc
Confidence 99999999999864 889999999999999999984
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=6.2e-27 Score=228.30 Aligned_cols=452 Identities=18% Similarity=0.210 Sum_probs=253.8
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc---CCCCCcEEEec
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLSLK 199 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~l~~L~~L~l~ 199 (835)
..|..+.+++|.+.. +...+.++..|.++++.+|++. .+|..++.+..++.+++++|++..+.. ..++|..++.+
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 345666777776653 3335566777777777777764 455666666667777777666655432 34444455555
Q ss_pred ccchH---HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCC
Q 003270 200 RSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 276 (835)
Q Consensus 200 ~~~i~---~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 276 (835)
+|.+. +.++.+..|..++..+| ++. ++|..+.++.+|..+++.+|. +..- +.... +++.|++||...|
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N-~i~--slp~~~~~~~~l~~l~~~~n~-l~~l-~~~~i-~m~~L~~ld~~~N--- 193 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNN-QIS--SLPEDMVNLSKLSKLDLEGNK-LKAL-PENHI-AMKRLKHLDCNSN--- 193 (565)
T ss_pred ccceeecCchHHHHhhhhhhhcccc-ccc--cCchHHHHHHHHHHhhccccc-hhhC-CHHHH-HHHHHHhcccchh---
Confidence 44433 44555555666655555 333 345555555666666666655 3322 22222 3455555555444
Q ss_pred CccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee
Q 003270 277 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 356 (835)
Q Consensus 277 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~ 356 (835)
.-+..|+.++.+.+|+.|++..|.+. .+| .+.+|+.+.++.+..|.++.+
T Consensus 194 --------------------~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP---------ef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 194 --------------------LLETLPPELGGLESLELLYLRRNKIR-FLP---------EFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred --------------------hhhcCChhhcchhhhHHHHhhhcccc-cCC---------CCCccHHHHHHHhcccHHHhh
Confidence 34444455555555555555555421 112 233455555555555555444
Q ss_pred ---eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCC
Q 003270 357 ---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEG 433 (835)
Q Consensus 357 ---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 433 (835)
..++++.+..|++.+|++..+... +. .+.+|++||+++ |.|++.. ..+ +++ .|+.|.+.|++
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde----~c----lLrsL~rLDlSN-N~is~Lp-~sL---gnl-hL~~L~leGNP- 308 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDE----IC----LLRSLERLDLSN-NDISSLP-YSL---GNL-HLKFLALEGNP- 308 (565)
T ss_pred HHHHhcccccceeeeccccccccCchH----HH----HhhhhhhhcccC-CccccCC-ccc---ccc-eeeehhhcCCc-
Confidence 345677778888888888765322 21 235788888888 5776542 233 566 78888888876
Q ss_pred CccccccCCcceEEeccCCc---ccccccc--cC---CCCcEEecCCCCCccccccccccccccccCcCCCCcccccccc
Q 003270 434 LTVVRFCSTSLVSLSLVGCR---AITALEL--KC---PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEAL 505 (835)
Q Consensus 434 l~~~~~~~~~l~~l~l~~~~---~l~~l~~--~~---~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~ 505 (835)
+..+.- ++..+. -++.+.. .+ .+-+.=........ .+..| +.......+.++++.-
T Consensus 309 lrTiRr--------~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~--~~~~~------~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 309 LRTIRR--------EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP--SESFP------DIYAIITTKILDVSDK 372 (565)
T ss_pred hHHHHH--------HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC--CCccc------chhhhhhhhhhccccc
Confidence 433311 000000 0111100 00 00000000000000 00111 1334455666777766
Q ss_pred eeEEEeecCCcccccccccCCC---cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhcccccee
Q 003270 506 HMVVLELKGCGVLSDAYINCPL---LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTML 582 (835)
Q Consensus 506 ~l~~l~~~~~~~l~~~~~~~~~---L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 582 (835)
++ ..+|+.....-. ...++++.| ++.+ +|..+..+..+.+.-+..++.++.. +..+..+++|..|
T Consensus 373 ql--------t~VPdEVfea~~~~~Vt~VnfskN-qL~e--lPk~L~~lkelvT~l~lsnn~isfv-~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 373 QL--------TLVPDEVFEAAKSEIVTSVNFSKN-QLCE--LPKRLVELKELVTDLVLSNNKISFV-PLELSQLQKLTFL 440 (565)
T ss_pred cc--------ccCCHHHHHHhhhcceEEEecccc-hHhh--hhhhhHHHHHHHHHHHhhcCccccc-hHHHHhhhcceee
Confidence 66 566765433322 677888887 4533 6666655555555555555545544 5677888888888
Q ss_pred eecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 583 DLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 583 ~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
++++|.+.++|..++.+..|+.|+++.|. +... |..+ ..+..++.+-.++|++.. .-+..+..+.+|++|++.+
T Consensus 441 ~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~l-P~~~---y~lq~lEtllas~nqi~~-vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 441 DLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRML-PECL---YELQTLETLLASNNQIGS-VDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ecccchhhhcchhhhhhhhhheecccccc-cccc-hHHH---hhHHHHHHHHhccccccc-cChHHhhhhhhcceeccCC
Confidence 88888888888888888888888888886 5533 3332 334566777777788876 3445678888888888888
Q ss_pred CC
Q 003270 663 CG 664 (835)
Q Consensus 663 ~~ 664 (835)
|.
T Consensus 515 Nd 516 (565)
T KOG0472|consen 515 ND 516 (565)
T ss_pred Cc
Confidence 75
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.6e-25 Score=229.69 Aligned_cols=367 Identities=20% Similarity=0.197 Sum_probs=248.6
Q ss_pred CCCeeEEEccCCcchh-hHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccE
Q 003270 97 YPNATEVNIYGAPAIH-LLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 175 (835)
Q Consensus 97 ~~~l~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 175 (835)
.|.++-+|+++ +.+. +..|.....+++++.|.+.+.++. .+|+.++.+.+|++|.+++|++.. +...+..+++||.
T Consensus 6 LpFVrGvDfsg-NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSG-NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccC-CcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 46678888888 4555 567788888888888888877776 468888888888888888887642 3334455666666
Q ss_pred EeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHH
Q 003270 176 LEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 255 (835)
Q Consensus 176 L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~ 255 (835)
+.+.+|++.. .+|+..+-.+..|..|++++| +++ ..|..+...+++-+|+|++|. +. .+|
T Consensus 83 v~~R~N~LKn---------------sGiP~diF~l~dLt~lDLShN-qL~--EvP~~LE~AKn~iVLNLS~N~-Ie-tIP 142 (1255)
T KOG0444|consen 83 VIVRDNNLKN---------------SGIPTDIFRLKDLTILDLSHN-QLR--EVPTNLEYAKNSIVLNLSYNN-IE-TIP 142 (1255)
T ss_pred Hhhhcccccc---------------CCCCchhcccccceeeecchh-hhh--hcchhhhhhcCcEEEEcccCc-cc-cCC
Confidence 6666554432 234455666777777777776 454 456667777777777777776 44 445
Q ss_pred HHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcc-ccccccCccc
Q 003270 256 REIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL-TSVSLELPRL 332 (835)
Q Consensus 256 ~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~L 332 (835)
..+.-+++.|-.||+++|. .+|+.+..+.+|++|+++++ .+.......+..+++|+.|.+++.+-. ..+|.
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt----- 216 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT----- 216 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhcccccchhhcCCC-----
Confidence 5544477777777777776 56666666666666666664 444444444555555555555543311 00110
Q ss_pred ceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhh
Q 003270 333 QNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 412 (835)
Q Consensus 333 ~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~ 412 (835)
.+. .+.+|..+|++. |++.. .|+
T Consensus 217 ------------------------sld-------------------------------~l~NL~dvDlS~-N~Lp~-vPe 239 (1255)
T KOG0444|consen 217 ------------------------SLD-------------------------------DLHNLRDVDLSE-NNLPI-VPE 239 (1255)
T ss_pred ------------------------chh-------------------------------hhhhhhhccccc-cCCCc-chH
Confidence 011 124666667766 45543 244
Q ss_pred hccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccC
Q 003270 413 VFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLG 492 (835)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~ 492 (835)
.+ ..+++|+.|+++++. ++.+ .+ ...
T Consensus 240 cl---y~l~~LrrLNLS~N~-iteL-------------------------------~~-------------------~~~ 265 (1255)
T KOG0444|consen 240 CL---YKLRNLRRLNLSGNK-ITEL-------------------------------NM-------------------TEG 265 (1255)
T ss_pred HH---hhhhhhheeccCcCc-eeee-------------------------------ec-------------------cHH
Confidence 44 667778888877765 3322 10 023
Q ss_pred cCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHh
Q 003270 493 ICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYS 572 (835)
Q Consensus 493 ~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 572 (835)
.-.+|+.|+++.|++ ..+|+.+..+++|+.|.+.+| +++-+++|+.++.+.+|+.+...+|..- . .|+.
T Consensus 266 ~W~~lEtLNlSrNQL--------t~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE-l-VPEg 334 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQL--------TVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE-L-VPEG 334 (1255)
T ss_pred HHhhhhhhccccchh--------ccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc-c-Cchh
Confidence 335677788888888 677888888888999888887 6777788888888888988888887632 2 2788
Q ss_pred hhhccccceeeecCccccCchHHHhccccccEEecccccccc
Q 003270 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 614 (835)
+..|..|+.|.|+.|++..+|+++.-++.|+.|++..|+++-
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 889999999999999999899999999999999999988663
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.5e-24 Score=222.78 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=83.8
Q ss_pred CcCcEEEcCCcccC-hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~ 201 (835)
+-.+-.|+++|.++ +.+|..+..+++++-|.+....+ ..+|+.++.+.+|++|++.+|++..+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vh-------------- 71 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVH-------------- 71 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhh--------------
Confidence 33455666666666 34666666666666666666554 345555555555555555444443222
Q ss_pred chHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC
Q 003270 202 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 274 (835)
Q Consensus 202 ~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 274 (835)
..++.+|.||.+.+..| ++...++|..+..+..|+.|||+.|+ +. +.|..+. +..++-.|++++|.
T Consensus 72 ---GELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE-~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 72 ---GELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLE-YAKNSIVLNLSYNN 137 (1255)
T ss_pred ---hhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hh-hcchhhh-hhcCcEEEEcccCc
Confidence 45667788888888887 57777888888888899999999888 54 4455554 55666777777763
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=3.1e-24 Score=231.15 Aligned_cols=451 Identities=20% Similarity=0.215 Sum_probs=232.7
Q ss_pred HHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCc
Q 003270 115 VMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLE 194 (835)
Q Consensus 115 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~ 194 (835)
+|.-+.....+..|++..|.+-..-.+.+.++-+|+.|++++|.+. .+|..+..+..|+.|.++.|.+....
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp------- 84 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP------- 84 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-------
Confidence 4444444444777777777554322334445555888888887763 45555555666666666666554433
Q ss_pred EEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCC-
Q 003270 195 HLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC- 273 (835)
Q Consensus 195 ~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~- 273 (835)
....++.+|++|.|.+|. +. .+|..+..+++|++|++++|. +. ..|.-+. .++.++.+..++|
T Consensus 85 ----------~s~~~~~~l~~lnL~~n~-l~--~lP~~~~~lknl~~LdlS~N~-f~-~~Pl~i~-~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 85 ----------SSCSNMRNLQYLNLKNNR-LQ--SLPASISELKNLQYLDLSFNH-FG-PIPLVIE-VLTAEEELAASNNE 148 (1081)
T ss_pred ----------hhhhhhhcchhheeccch-hh--cCchhHHhhhcccccccchhc-cC-CCchhHH-hhhHHHHHhhhcch
Confidence 233444455555555542 22 345555555555555555554 22 1122221 3444444444444
Q ss_pred ------------------C---CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCccc
Q 003270 274 ------------------P---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRL 332 (835)
Q Consensus 274 ------------------~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L 332 (835)
. .++.++..+.. .|+++++ .+. ...+..+.+|+.|....+++. .+-..-+++
T Consensus 149 ~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N-~~~---~~dls~~~~l~~l~c~rn~ls-~l~~~g~~l 221 (1081)
T KOG0618|consen 149 KIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN-EME---VLDLSNLANLEVLHCERNQLS-ELEISGPSL 221 (1081)
T ss_pred hhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccc-hhh---hhhhhhccchhhhhhhhcccc-eEEecCcch
Confidence 2 12222222222 3444443 222 122333334444433333211 111112333
Q ss_pred ceeeccccccccchhhccccccee-eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhh
Q 003270 333 QNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 411 (835)
Q Consensus 333 ~~L~~~~~~~l~~l~l~~~~l~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 411 (835)
+.|...+++ +..+ .-.--.+++++++++|.+++.. .+...|.+|+.++... |.++.. |
T Consensus 222 ~~L~a~~n~-----------l~~~~~~p~p~nl~~~dis~n~l~~lp--------~wi~~~~nle~l~~n~-N~l~~l-p 280 (1081)
T KOG0618|consen 222 TALYADHNP-----------LTTLDVHPVPLNLQYLDISHNNLSNLP--------EWIGACANLEALNANH-NRLVAL-P 280 (1081)
T ss_pred heeeeccCc-----------ceeeccccccccceeeecchhhhhcch--------HHHHhcccceEecccc-hhHHhh-H
Confidence 333333322 2211 1112235566666666665432 2222456666666666 455322 2
Q ss_pred hhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccccccccccccc
Q 003270 412 EVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 491 (835)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l 491 (835)
..+ ....+|+.|.+..|. +..++.... ....|++|++..+. +. -+|.. .+
T Consensus 281 ~ri---~~~~~L~~l~~~~ne-l~yip~~le------------------~~~sL~tLdL~~N~-L~---~lp~~----~l 330 (1081)
T KOG0618|consen 281 LRI---SRITSLVSLSAAYNE-LEYIPPFLE------------------GLKSLRTLDLQSNN-LP---SLPDN----FL 330 (1081)
T ss_pred HHH---hhhhhHHHHHhhhhh-hhhCCCccc------------------ccceeeeeeehhcc-cc---ccchH----HH
Confidence 222 344555555555554 444432211 13334444443321 11 11111 01
Q ss_pred CcCCC-CcccccccceeEEEeecCCccccc-ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh
Q 003270 492 GICPK-LSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG 569 (835)
Q Consensus 492 ~~~~~-L~~l~l~~~~l~~l~~~~~~~l~~-~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 569 (835)
.-... ++.+..+.|.+. ..|. .=..++.|+.|.+-+| .++|..+|. +.+++.|+.|++++|+.....
T Consensus 331 ~v~~~~l~~ln~s~n~l~--------~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fp- 399 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLS--------TLPSYEENNHAALQELYLANN-HLTDSCFPV-LVNFKHLKVLHLSYNRLNSFP- 399 (1081)
T ss_pred hhhhHHHHHHhhhhcccc--------ccccccchhhHHHHHHHHhcC-cccccchhh-hccccceeeeeecccccccCC-
Confidence 11111 344444555442 2221 1124567888888887 677776664 667888888888888744322
Q ss_pred hHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 570 LYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 570 ~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
...+.+++.|++|+||+|.+..+|..+..|+.|++|...+|. +... | . +..+++|+.+|++.|+++...+++..
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~f-P-e---~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSF-P-E---LAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeec-h-h---hhhcCcceEEecccchhhhhhhhhhC
Confidence 456778888888888888888888888888888888888877 4432 2 2 36688888888888888775555443
Q ss_pred hhCCCccEEEccCCCC
Q 003270 650 AYCTHLTHVSLNGCGN 665 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~ 665 (835)
. .++|++|+++||..
T Consensus 474 p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 P-SPNLKYLDLSGNTR 488 (1081)
T ss_pred C-CcccceeeccCCcc
Confidence 2 37888888888874
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2e-24 Score=232.66 Aligned_cols=245 Identities=18% Similarity=0.190 Sum_probs=148.1
Q ss_pred EEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccchH---
Q 003270 128 LTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA--- 204 (835)
Q Consensus 128 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~--- 204 (835)
+|++...+. .+|..+..-..+..|+++.|.+-...-+.+.+.-+ |++|++++|.+.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~--------------------L~~l~lsnn~~~~fp 61 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVK--------------------LKSLDLSNNQISSFP 61 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheee--------------------eEEeeccccccccCC
Confidence 344444443 34444433333667777776554322233333333 555555555443
Q ss_pred HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccC
Q 003270 205 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVR 282 (835)
Q Consensus 205 ~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~ 282 (835)
..+..+.+|+.|+++.| .+. .+|....++.+|+++.|.+|. +. ..|..+. .+.+|+.|++++|. .+|..+..
T Consensus 62 ~~it~l~~L~~ln~s~n-~i~--~vp~s~~~~~~l~~lnL~~n~-l~-~lP~~~~-~lknl~~LdlS~N~f~~~Pl~i~~ 135 (1081)
T KOG0618|consen 62 IQITLLSHLRQLNLSRN-YIR--SVPSSCSNMRNLQYLNLKNNR-LQ-SLPASIS-ELKNLQYLDLSFNHFGPIPLVIEV 135 (1081)
T ss_pred chhhhHHHHhhcccchh-hHh--hCchhhhhhhcchhheeccch-hh-cCchhHH-hhhcccccccchhccCCCchhHHh
Confidence 44566778888888887 344 467778889999999999997 43 4455555 78899999999987 67777777
Q ss_pred CCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCC
Q 003270 283 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 362 (835)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~ 362 (835)
+..++.+..+++. ....++... ++++++..+...+.++.+...+++ .+++.+|.+....+.+++
T Consensus 136 lt~~~~~~~s~N~-----~~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~----------~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 136 LTAEEELAASNNE-----KIQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH----------QLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred hhHHHHHhhhcch-----hhhhhcccc-chhhhhhhhhcccchhcchhhhhe----------eeecccchhhhhhhhhcc
Confidence 7777777777641 112233333 778888888877777766666555 135555655544677778
Q ss_pred CcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 363 ALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+|+.+....|++...... -++++.|+...| .++...+. ....+|++++++.+.
T Consensus 200 ~l~~l~c~rn~ls~l~~~-----------g~~l~~L~a~~n-~l~~~~~~-----p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEIS-----------GPSLTALYADHN-PLTTLDVH-----PVPLNLQYLDISHNN 252 (1081)
T ss_pred chhhhhhhhcccceEEec-----------CcchheeeeccC-cceeeccc-----cccccceeeecchhh
Confidence 888777776666543322 256677776663 44421111 223456666665543
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.6e-18 Score=210.48 Aligned_cols=342 Identities=20% Similarity=0.247 Sum_probs=206.5
Q ss_pred hHHhhcCCCCCCEEEecCCCCC------cccccccccC-CcccEEeccCcccccccc--CCCCCcEEEecccchH---HH
Q 003270 139 FFHALADCSMLKSLNVNDATLG------NGVQEIPINH-DQLRRLEITKCRVMRVSI--RCPQLEHLSLKRSNMA---QA 206 (835)
Q Consensus 139 ~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~l-~~L~~L~l~~~~~~~~~~--~l~~L~~L~l~~~~i~---~~ 206 (835)
.+.+|.++++|+.|.+..+... ..+|..+..+ .+|+.|.+.++.+..++. ...+|++|+++++.+. ..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc
Confidence 3456777888888888655321 2344444444 457888887777665543 3567777777777665 33
Q ss_pred hhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCC
Q 003270 207 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRL 283 (835)
Q Consensus 207 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~ 283 (835)
+..+++|+.|+++++..+. .+| .+..+++|++|++++|..+. ..|..+. ++++|+.|++++|. .+|..+ ++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~--~ip-~ls~l~~Le~L~L~~c~~L~-~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLK--EIP-DLSMATNLETLKLSDCSSLV-ELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccCCCCCEEECCCCCCcC--cCC-ccccCCcccEEEecCCCCcc-ccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 4567777777777764443 233 24566777777777776443 4444554 67777777777765 333332 56
Q ss_pred CCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCC
Q 003270 284 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363 (835)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~ 363 (835)
++|++|++++|..+.. .+. ...+|++|+++++.+ ..+|..+ .+++
T Consensus 704 ~sL~~L~Lsgc~~L~~-~p~---~~~nL~~L~L~~n~i-~~lP~~~------------------------------~l~~ 748 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKS-FPD---ISTNISWLDLDETAI-EEFPSNL------------------------------RLEN 748 (1153)
T ss_pred CCCCEEeCCCCCCccc-ccc---ccCCcCeeecCCCcc-ccccccc------------------------------cccc
Confidence 6666666666633221 111 124566666666553 2333221 1223
Q ss_pred cceeeeccCccccchhhcchhhHH-HHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCC
Q 003270 364 LHRINITSNSLQKLSLQKQENLTS-LALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCST 442 (835)
Q Consensus 364 L~~L~l~~n~l~~~~~~~~~~l~~-l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 442 (835)
|++|.+..+...... .....+.. ....+++|+.|++++|+.+. ..|..+ +.+++|+.|++++|..++.+|..
T Consensus 749 L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~-- 821 (1153)
T PLN03210 749 LDELILCEMKSEKLW-ERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSI---QNLHKLEHLEIENCINLETLPTG-- 821 (1153)
T ss_pred cccccccccchhhcc-ccccccchhhhhccccchheeCCCCCCcc-ccChhh---hCCCCCCEEECCCCCCcCeeCCC--
Confidence 333333221110000 00000000 01134789999999964443 345555 78889999999998766654421
Q ss_pred cceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccccccc
Q 003270 443 SLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY 522 (835)
Q Consensus 443 ~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~ 522 (835)
..+++|+.+++++|..+...+.. .++|+.|++++|.+ ..+|..+
T Consensus 822 -----------------~~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n~i--------~~iP~si 865 (1153)
T PLN03210 822 -----------------INLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRTGI--------EEVPWWI 865 (1153)
T ss_pred -----------------CCccccCEEECCCCCcccccccc-----------ccccCEeECCCCCC--------ccChHHH
Confidence 13667888888888876643222 24677778888877 6678888
Q ss_pred ccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcC
Q 003270 523 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG 566 (835)
Q Consensus 523 ~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 566 (835)
..+++|+.|++++|+++.. ++.....+++|+.+++++|..+.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 8999999999999987764 66667788899999999987654
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=6.3e-18 Score=205.40 Aligned_cols=341 Identities=21% Similarity=0.215 Sum_probs=189.7
Q ss_pred HHhcCCCCCEEeCCCCCC-----CChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHH
Q 003270 232 AATSCPQLESLDMSNCSC-----VSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAA 304 (835)
Q Consensus 232 ~~~~~~~L~~L~L~~~~~-----l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 304 (835)
.+.++++|+.|.+..+.. .....+..+..-..+|+.|++.++. .+|..+ ...+|++|++.++ .+.. .+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~-L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEK-LWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccc-cccc
Confidence 456666677666654320 1111222222112356677766654 455444 4566777777664 3332 2334
Q ss_pred hhhccCccEEEccCCCccccccc--cCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcc
Q 003270 305 ISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQ 382 (835)
Q Consensus 305 l~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 382 (835)
+..+++|+.|+++++...+.+|. .+++|+.|.+.+|..+..+.- .+.++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~--------si~~L--------------------- 680 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS--------SIQYL--------------------- 680 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch--------hhhcc---------------------
Confidence 45566677777766655554442 123344444433333222110 12333
Q ss_pred hhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccc--
Q 003270 383 ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-- 460 (835)
Q Consensus 383 ~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~-- 460 (835)
++|+.|++++|+.++... . ...+++|+.|++++|..+..++....+++.+.+.+.. ++.++.
T Consensus 681 ----------~~L~~L~L~~c~~L~~Lp-~----~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~ 744 (1153)
T PLN03210 681 ----------NKLEDLDMSRCENLEILP-T----GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA-IEEFPSNL 744 (1153)
T ss_pred ----------CCCCEEeCCCCCCcCccC-C----cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc-cccccccc
Confidence 344444444444333211 1 0134444444444444444333333334444443321 222221
Q ss_pred cCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCc
Q 003270 461 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK 540 (835)
Q Consensus 461 ~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~ 540 (835)
.+++|+.|.+.++....-+... ..+..+....+++|+.|++++|... ..+|..+.++++|+.|++++|..+.
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~-~~l~~~~~~~~~sL~~L~Ls~n~~l-------~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERV-QPLTPLMTMLSPSLTRLFLSDIPSL-------VELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccccccccccchhhccccc-cccchhhhhccccchheeCCCCCCc-------cccChhhhCCCCCCEEECCCCCCcC
Confidence 3455565655554321111000 0011111234566777777766542 6788889999999999999997665
Q ss_pred cchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHH
Q 003270 541 DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLES 620 (835)
Q Consensus 541 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 620 (835)
. +|..+ .+++|+.|++++|...... +. ..++|++|++++|.+..+|..+..+++|+.|++++|++++.....
T Consensus 817 ~--LP~~~-~L~sL~~L~Ls~c~~L~~~-p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~- 888 (1153)
T PLN03210 817 T--LPTGI-NLESLESLDLSGCSRLRTF-PD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN- 888 (1153)
T ss_pred e--eCCCC-CccccCEEECCCCCccccc-cc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc-
Confidence 3 55544 6889999999999876542 11 246899999999999999999999999999999999888875432
Q ss_pred HHhcCCCCCccEEeCCCcc
Q 003270 621 LYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 621 l~~~~~~~~L~~L~l~~n~ 639 (835)
+..+++|+.+++++|.
T Consensus 889 ---~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 889 ---ISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---cccccCCCeeecCCCc
Confidence 2567888888888884
No 13
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.76 E-value=1.1e-18 Score=172.50 Aligned_cols=72 Identities=35% Similarity=0.719 Sum_probs=58.9
Q ss_pred HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCC
Q 003270 205 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 276 (835)
Q Consensus 205 ~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 276 (835)
....+||++++|.+.+|..+++.........|++|++|++..|..+++..+..++..|++|++|++++|..+
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 455678888888888888888888877888889999999999888888888888888888888888887533
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.2e-17 Score=153.30 Aligned_cols=236 Identities=19% Similarity=0.291 Sum_probs=170.5
Q ss_pred HHHHHHhhhccccchhhhHHHHHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhh-HHHHHHh
Q 003270 42 MVLQKQKIWKSGWILQMTYCIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL-LVMKAVS 120 (835)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~l~ 120 (835)
..++.|.-++......++.||++|++.+.+...|..++....++++..+.++.++ .+..+.+.. ....+ .+++.+.
T Consensus 105 ill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar-~~~~~prlae~~~ 181 (419)
T KOG2120|consen 105 ILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLAR-SFMDQPRLAEHFS 181 (419)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcch-hhhcCchhhhhhh
Confidence 3445555555555666789999999999999999999999999999888887754 455666554 12222 2344333
Q ss_pred h-CCcCcEEEcCCcccChh-hHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEe
Q 003270 121 L-LRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 198 (835)
Q Consensus 121 ~-~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l 198 (835)
- -+.|++||++...|+.. .-..++.|++|+.|.+.++.+++.
T Consensus 182 ~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~------------------------------------ 225 (419)
T KOG2120|consen 182 PFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP------------------------------------ 225 (419)
T ss_pred hhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH------------------------------------
Confidence 3 34689999998888855 334556788888888888877653
Q ss_pred cccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCC---
Q 003270 199 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN--- 275 (835)
Q Consensus 199 ~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~--- 275 (835)
|...++...+|+.|+++.|.+++..++...+.+|+.|++|++++|...++..-..+.+--++|..|+++++..
T Consensus 226 ----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 226 ----IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred ----HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 3345667778888888888888877777788888888888888888444443334444456788888888761
Q ss_pred ---CCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCC
Q 003270 276 ---ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 276 ---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 320 (835)
+..-..++|+|.+|++++|..+++.....+.++..|++|.++.|.
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 122234688888888888877888778888888889999888886
No 15
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.68 E-value=2.6e-17 Score=162.94 Aligned_cols=275 Identities=23% Similarity=0.359 Sum_probs=147.9
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHh-hhhccccceeeecCcccc---CchHHHhcc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYS-LRSLQNLTMLDLSYTFLT---NLEPVFESC 599 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~---~l~~~~~~~ 599 (835)
+|++++.|++.+|.++++.........|+.|+++++..|..+++..... ...+++|++|.+++|.-- ++...++++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 3444444444444444444444444444444444444444444332221 224444444444444321 233344455
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCc-ccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQP 678 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 678 (835)
..++.+..++|..++........ ..+.-+-++++.+| .++++.+...-..+..|+.+..++|..+.+......+..
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~--~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~- 318 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAA--AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH- 318 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHh--ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC-
Confidence 55555555555444433333321 23334444444443 344443333344455555555555554433221111111
Q ss_pred CCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcc-cccCccceEeccCCCCcccc-----cccccc
Q 003270 679 FESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQ-ARCFHLSSLNLSLSANLKEV-----DVACFN 752 (835)
Q Consensus 679 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~l~~~-----~~~~~~ 752 (835)
..+|+.+.+.+|.++++.-+..+ .++++|+.+++.+|..+.+. ..+|+.
T Consensus 319 -------------------------~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 319 -------------------------CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred -------------------------CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 22355555555555554433333 34566666666655444432 335677
Q ss_pred ccEEecccccchhhhh--------hcCCccceeecccCc-CChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHhCC
Q 003270 753 LCFLNLSNCCSLETLK--------LDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACP 823 (835)
Q Consensus 753 L~~L~l~~c~~l~~l~--------~~~~~L~~L~l~~~~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~p 823 (835)
|+++.+++|..++... .....|+.+.+++|+ ++|..++ .+..|++||.+++.+|..+...++..+++.+|
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 7777777776554431 235789999999999 6655444 48899999999999999999999999999999
Q ss_pred cchh
Q 003270 824 SLKR 827 (835)
Q Consensus 824 ~l~~ 827 (835)
+++.
T Consensus 453 ~i~v 456 (483)
T KOG4341|consen 453 NIKV 456 (483)
T ss_pred ccee
Confidence 9874
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=6.5e-15 Score=155.78 Aligned_cols=177 Identities=18% Similarity=0.260 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHhcCCCeeEEEccCCcchhh----HHHHHHhhCCcCcEEEcCCcccC------hhhHHhhcCCCCCCE
Q 003270 82 NRKISVEQFEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQLG------DAFFHALADCSMLKS 151 (835)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~------~~~~~~l~~~~~L~~ 151 (835)
....+.......++..++++.++++++ .+.+ .+++.+...+++++++++++.+. ..++..+..+++|+.
T Consensus 7 ~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 7 GELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred cCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeE
Confidence 333333444555556666777777774 3322 24445566677777777777665 234556666777777
Q ss_pred EEecCCCCCcccccccccCCc---ccEEeccCccccccccCCCCCcEEEecccchHHHhhcC-CCCcEEeecCCCCCCHH
Q 003270 152 LNVNDATLGNGVQEIPINHDQ---LRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC-PLLHLLDIASCHKLSDA 227 (835)
Q Consensus 152 L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-~~L~~L~l~~~~~l~~~ 227 (835)
|++++|.+.+..+..+..+.. |++|++++|.+.... ...+...+..+ ++|++|++++| .++..
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~------------~~~l~~~l~~~~~~L~~L~L~~n-~l~~~ 152 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG------------LRLLAKGLKDLPPALEKLVLGRN-RLEGA 152 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH------------HHHHHHHHHhCCCCceEEEcCCC-cCCch
Confidence 777777765444333333322 444444444332100 00011334455 67777777776 34422
Q ss_pred ---HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHH---hCCCCcEEecCCC
Q 003270 228 ---AIRLAATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYC 273 (835)
Q Consensus 228 ---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~ 273 (835)
.+...+..+++|++|++++|. +++.....+.. .+++|+.|++++|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 233445556677777777776 66544433322 2335666666655
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=6.4e-16 Score=151.81 Aligned_cols=206 Identities=20% Similarity=0.177 Sum_probs=123.6
Q ss_pred hHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 570 LYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 570 ~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
..+|..+++|++|++++|.++.+.+ +|.+...+++|.+..|+ +.......+ .++.+|+.|++++|+|+. ..|..
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f---~~ls~L~tL~L~~N~it~-~~~~a 341 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMF---QGLSGLKTLSLYDNQITT-VAPGA 341 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhh---hccccceeeeecCCeeEE-Eeccc
Confidence 3568899999999999999998765 88889999999999988 776655554 788899999999999987 67888
Q ss_pred HhhCCCccEEEccCCCCCcc--ccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcc
Q 003270 649 LAYCTHLTHVSLNGCGNMHD--LNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQ 726 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~ 726 (835)
|..+.+|.+|++-.||...+ +.|-..|..-.. ..+...-+....++.+.+++. .++.+
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--------------~~~~~~Cq~p~~~~~~~~~dv------~~~~~ 401 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--------------VVGNPRCQSPGFVRQIPISDV------AFGDF 401 (498)
T ss_pred ccccceeeeeehccCcccCccchHHHHHHHhhCC--------------CCCCCCCCCCchhccccchhc------ccccc
Confidence 99999999999988875432 223222221111 000001111112222222221 11110
Q ss_pred cccCccceEeccCCCCccccccccccccEEecccccchhhhhhcCC-ccceeecccCcCChhHHHHHHhcCCCcceeecc
Q 003270 727 ARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCP-KLTSLFLQSCNIDEEGVESAITQCGMLETLDVR 805 (835)
Q Consensus 727 ~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~ 805 (835)
.|..=++.. |..-......++-+.++.=.....++.+|.+.| .-.++++.+|.++ .+|.. .+.+| .+|++
T Consensus 402 -~c~~~ee~~---~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~--~vp~~--~~~~l-~~dls 472 (498)
T KOG4237|consen 402 -RCGGPEELG---CLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT--SVPDE--LLRSL-LLDLS 472 (498)
T ss_pred -ccCCccccC---CCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc--ccCHH--HHhhh-hcccc
Confidence 000000100 111111112334444433334456777777766 5778888888874 55554 55577 88888
Q ss_pred cccC
Q 003270 806 FCPK 809 (835)
Q Consensus 806 ~c~~ 809 (835)
+|+.
T Consensus 473 ~n~i 476 (498)
T KOG4237|consen 473 NNRI 476 (498)
T ss_pred cCce
Confidence 8774
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=2.4e-13 Score=143.82 Aligned_cols=222 Identities=18% Similarity=0.193 Sum_probs=140.4
Q ss_pred ceeeccCCCCCCHH---HHHHHHhcCCCeeEEEccCCcchh------hHHHHHHhhCCcCcEEEcCCcccChhhHHhhcC
Q 003270 75 WRCLNFENRKISVE---QFEDVCQRYPNATEVNIYGAPAIH------LLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD 145 (835)
Q Consensus 75 ~~~l~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 145 (835)
.+.+.+....++.. .+...+...+++++++++++ .+. ..++.++..+++|+.|++++|.+.+..+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 45666666666443 45556678888999999884 333 335567888999999999999998766666655
Q ss_pred CCC---CCEEEecCCCCCc----ccccccccC-CcccEEeccCccccc-----c---ccCCCCCcEEEecccchH-----
Q 003270 146 CSM---LKSLNVNDATLGN----GVQEIPINH-DQLRRLEITKCRVMR-----V---SIRCPQLEHLSLKRSNMA----- 204 (835)
Q Consensus 146 ~~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~-----~---~~~l~~L~~L~l~~~~i~----- 204 (835)
+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+.. + ...+++|++|++++|.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 9999999998873 233344555 788888888887762 1 124556777777777654
Q ss_pred ---HHhhcCCCCcEEeecCCCCCCHHH---HHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhC----CCCcEEecCCCC
Q 003270 205 ---QAVLNCPLLHLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESLREIALSC----ANLRILNSSYCP 274 (835)
Q Consensus 205 ---~~~~~~~~L~~L~l~~~~~l~~~~---l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~----~~L~~L~l~~~~ 274 (835)
..+..+++|++|++++| .+++.+ +...+..+++|++|++++|. +++..+..+...+ +.|++|++++|.
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 22344557777777776 354333 23345566677777777776 6665555555333 566666666663
Q ss_pred CC-------CccccCCCCCcEEecCCCCCCChh
Q 003270 275 NI-------SLESVRLPMLTVLQLHSCEGITSA 300 (835)
Q Consensus 275 ~l-------~~~~~~~~~L~~L~l~~~~~~~~~ 300 (835)
-. ......+++|+++++++| .+.+.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 11 122233455555555554 44444
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1e-13 Score=155.98 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=17.7
Q ss_pred cccEEecccccchhhhhh---cCCccceeecccCcCC
Q 003270 752 NLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNID 785 (835)
Q Consensus 752 ~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~ 785 (835)
+|+.|+++++. ++.+|. .+++|+.|++++|+++
T Consensus 423 ~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence 44445555443 444542 3556666666666665
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=9.1e-16 Score=150.75 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=106.5
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecC-CCCCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 176 (835)
+...+|+++. |.+....+++|..+++||.|+|++|.|+.+.|++|.++++|.+|-+.+ |+++..-...++++..|+.|
T Consensus 67 ~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4689999999 789998889999999999999999999999999999999998888777 88877666789999999999
Q ss_pred eccCcccccc----ccCCCCCcEEEecccchH----HHhhcCCCCcEEeecCCCCC
Q 003270 177 EITKCRVMRV----SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKL 224 (835)
Q Consensus 177 ~l~~~~~~~~----~~~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l 224 (835)
.+.-|++.-+ ...+++|..|.+.+|.+. ..+..+..++.+.+..|+.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 9998887543 447888888888888776 35667788888888877633
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=4.5e-13 Score=150.83 Aligned_cols=256 Identities=21% Similarity=0.141 Sum_probs=135.1
Q ss_pred cCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHH
Q 003270 309 YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL 388 (835)
Q Consensus 309 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 388 (835)
..-..|+++++.+. .+|..++. +++.+.+..|.++.+. ...++|++|++++|+++... .
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~~----------~L~~L~L~~N~Lt~LP-~lp~~Lk~LdLs~N~LtsLP-~-------- 259 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLPA----------HITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTSLP-V-------- 259 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchhc----------CCCEEEccCCcCCCCC-CCCCCCcEEEecCCccCccc-C--------
Confidence 45678999988754 56655431 2333344445444431 12467777777777776542 1
Q ss_pred HhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEE
Q 003270 389 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKV 468 (835)
Q Consensus 389 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l 468 (835)
..++|+.|++++ +.++.. |. .+++|+.|++++|. ++.++. ..++|+.|
T Consensus 260 --lp~sL~~L~Ls~-N~L~~L-p~------lp~~L~~L~Ls~N~-Lt~LP~---------------------~p~~L~~L 307 (788)
T PRK15387 260 --LPPGLLELSIFS-NPLTHL-PA------LPSGLCKLWIFGNQ-LTSLPV---------------------LPPGLQEL 307 (788)
T ss_pred --cccccceeeccC-Cchhhh-hh------chhhcCEEECcCCc-cccccc---------------------ccccccee
Confidence 125677777777 356532 11 12456677776664 444432 23456666
Q ss_pred ecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhh
Q 003270 469 CLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATT 548 (835)
Q Consensus 469 ~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~ 548 (835)
+++++ ++..++..|. .|+.|++++|.+ ..+|.. ..+|++|++++| +++. +|..
T Consensus 308 dLS~N-~L~~Lp~lp~-----------~L~~L~Ls~N~L--------~~LP~l---p~~Lq~LdLS~N-~Ls~--LP~l- 360 (788)
T PRK15387 308 SVSDN-QLASLPALPS-----------ELCKLWAYNNQL--------TSLPTL---PSGLQELSVSDN-QLAS--LPTL- 360 (788)
T ss_pred ECCCC-ccccCCCCcc-----------cccccccccCcc--------cccccc---ccccceEecCCC-ccCC--CCCC-
Confidence 66654 3333322222 244445555555 223321 135666666665 3432 3321
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
.++|+.|++++|..... +. ..++|+.|++++|.++++|.. .++|+.|++++|+ ++... . ...
T Consensus 361 --p~~L~~L~Ls~N~L~~L--P~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP-~------l~~ 422 (788)
T PRK15387 361 --PSELYKLWAYNNRLTSL--PA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLP-M------LPS 422 (788)
T ss_pred --CcccceehhhccccccC--cc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCC-c------chh
Confidence 24566666666653321 11 124566666666666665542 2456666666666 55321 1 123
Q ss_pred CccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 629 ALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 629 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+|+.|++++|+++. +|..+..+++|+.|++++|+
T Consensus 423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCcccc--cChHHhhccCCCeEECCCCC
Confidence 56666666666653 55556666666666666665
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=3.8e-12 Score=144.53 Aligned_cols=225 Identities=18% Similarity=0.157 Sum_probs=121.1
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEE
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 605 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L 605 (835)
++|+.|++++| +++. +|..+ .++|+.|++++|..... +..+ .++|+.|++++|.+..+|..+. .+|+.|
T Consensus 199 ~~L~~L~Ls~N-~Lts--LP~~l--~~nL~~L~Ls~N~LtsL--P~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNN-ELKS--LPENL--QGNIKTLYANSNQLTSI--PATL--PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCC-CCCc--CChhh--ccCCCEEECCCCccccC--Chhh--hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 35666666665 3432 33322 24566666666654321 2222 2356666666666666665443 356666
Q ss_pred ecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCCCCCCccc
Q 003270 606 KLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVY 685 (835)
Q Consensus 606 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 685 (835)
++++|+ ++.. +..+ .++|+.|++++|+++. +|..+ .++|+.|++++|. +..++
T Consensus 268 ~Ls~N~-L~~L-P~~l-----~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~-Lt~LP--------------- 320 (754)
T PRK15370 268 DLFHNK-ISCL-PENL-----PEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNS-LTALP--------------- 320 (754)
T ss_pred ECcCCc-cCcc-cccc-----CCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCc-cccCC---------------
Confidence 666665 5532 2221 2466666666666653 33222 1356666666653 11111
Q ss_pred cccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCCcccccc-ccccccEEecccccch
Q 003270 686 NSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDV-ACFNLCFLNLSNCCSL 764 (835)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~l 764 (835)
.....+|+.|++.+|. ++. +|. .-+++|+.|+++++ .+..+.. ..++|++|++++|. +
T Consensus 321 ---------------~~l~~sL~~L~Ls~N~-Lt~--LP~-~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~-L 379 (754)
T PRK15370 321 ---------------ETLPPGLKTLEAGENA-LTS--LPA-SLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNA-L 379 (754)
T ss_pred ---------------ccccccceeccccCCc-ccc--CCh-hhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCc-C
Confidence 0011245566655552 333 222 11256777777764 2333322 23678888888874 5
Q ss_pred hhhhhcC-CccceeecccCcCCh--hHHHHHHhcCCCcceeecccccC
Q 003270 765 ETLKLDC-PKLTSLFLQSCNIDE--EGVESAITQCGMLETLDVRFCPK 809 (835)
Q Consensus 765 ~~l~~~~-~~L~~L~l~~~~i~~--~~l~~~~~~~~~L~~l~l~~c~~ 809 (835)
+.+|..+ ++|+.|++++|+++. ..+|.....++++..|++.+||.
T Consensus 380 t~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 380 TNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 6666544 368888888888641 23455555667888888888773
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.23 E-value=6.6e-11 Score=134.53 Aligned_cols=124 Identities=23% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 575 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 575 (835)
+|+.|++++|.++ .+|..+ .++|+.|++++| .++. ++..+ .++|+.|++++|+.... +..+
T Consensus 305 sL~~L~Ls~N~Lt--------~LP~~l--~~sL~~L~Ls~N-~Lt~--LP~~l--~~sL~~L~Ls~N~L~~L--P~~l-- 365 (754)
T PRK15370 305 GITHLNVQSNSLT--------ALPETL--PPGLKTLEAGEN-ALTS--LPASL--PPELQVLDVSKNQITVL--PETL-- 365 (754)
T ss_pred hHHHHHhcCCccc--------cCCccc--cccceeccccCC-cccc--CChhh--cCcccEEECCCCCCCcC--Chhh--
Confidence 4555666666652 233322 256777777776 3432 44332 25677777777764421 2223
Q ss_pred ccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHh-cCCCCCccEEeCCCcccch
Q 003270 576 LQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYK-KGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~n~~~~ 642 (835)
.++|+.|++++|.++.+|..+. ..|+.|++++|+ ++.. +..+.. ...++.+..|++.+|.++.
T Consensus 366 p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 366 PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRL-PESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccC-chhHHHHhhcCCCccEEEeeCCCccH
Confidence 2567777777777777766544 357777777776 5533 222211 2345677777777777765
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=8.6e-11 Score=114.76 Aligned_cols=228 Identities=23% Similarity=0.327 Sum_probs=133.1
Q ss_pred HHHHHhcCCCeeEEEccCCcchhh----HHHHHHhhCCcCcEEEcCCcc---cChhhH-------HhhcCCCCCCEEEec
Q 003270 90 FEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQ---LGDAFF-------HALADCSMLKSLNVN 155 (835)
Q Consensus 90 ~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~---i~~~~~-------~~l~~~~~L~~L~l~ 155 (835)
+.........++.|+++| +.+.. ++.+.+.+-++|+..++++=. ..+.+| +++..+++|++++|+
T Consensus 22 v~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 344444555566666666 33332 344445555566666655321 112222 233356666666666
Q ss_pred CCCCCcc----cccccccCCcccEEeccCcccccc-----------------ccCCCCCcEEEecccchH--------HH
Q 003270 156 DATLGNG----VQEIPINHDQLRRLEITKCRVMRV-----------------SIRCPQLEHLSLKRSNMA--------QA 206 (835)
Q Consensus 156 ~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~l~~L~~L~l~~~~i~--------~~ 206 (835)
+|.+... +.+.+..+..|++|.+.+|.+... ...-++|+++...+|.+. ..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 6665432 223444556666666666665432 124677888888777443 56
Q ss_pred hhcCCCCcEEeecCCCCCCHHH---HHHHHhcCCCCCEEeCCCCCCCChHHHHHHH---HhCCCCcEEecCCCCC-----
Q 003270 207 VLNCPLLHLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILNSSYCPN----- 275 (835)
Q Consensus 207 ~~~~~~L~~L~l~~~~~l~~~~---l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~----- 275 (835)
+...+.|+++.+..|. +...+ +...+..|++|+.|||.+|. ++..+-..++ ..+++|++|++++|.-
T Consensus 181 ~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 6777888888888874 44333 34566788888888888887 6655444443 3566788888888751
Q ss_pred --CCccc-cCCCCCcEEecCCCCCCChhhHHH----hhhccCccEEEccCCCc
Q 003270 276 --ISLES-VRLPMLTVLQLHSCEGITSASMAA----ISHSYMLEVLELDNCNL 321 (835)
Q Consensus 276 --l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~ 321 (835)
+...+ ...|+|+.+.+.+| .++...... ++..+.|+.|++++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11111 24678888888876 555443333 33457788888888865
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=8e-13 Score=114.86 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=97.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+-++..++.+.+++|++ ..+|..+..+.+|+.|++++| ++.+ +|..++.++.|+.|++.-|+.... +
T Consensus 29 Lf~~s~ITrLtLSHNKl--------~~vppnia~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~l--p 95 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL--------TVVPPNIAELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNIL--P 95 (264)
T ss_pred ccchhhhhhhhcccCce--------eecCCcHHHhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcC--c
Confidence 34445556666666666 455556666677777777766 4543 666666777777777766654333 5
Q ss_pred HhhhhccccceeeecCccccC--chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
..|+.++.|+.||+++|+++. +|..|..+..|+.|.+++|. ++-. +..+ +++++|+.|.+.+|.+.. +|..
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~l-p~dv---g~lt~lqil~lrdndll~--lpke 168 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEIL-PPDV---GKLTNLQILSLRDNDLLS--LPKE 168 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccC-Chhh---hhhcceeEEeeccCchhh--CcHH
Confidence 667777777777777776663 66666666677777777666 4322 3322 566677777777766643 5666
Q ss_pred HhhCCCccEEEccCCC
Q 003270 649 LAYCTHLTHVSLNGCG 664 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~ 664 (835)
++.++.|++|.+.+|.
T Consensus 169 ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHHHhcccce
Confidence 6667777777776664
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=7.3e-13 Score=115.09 Aligned_cols=114 Identities=22% Similarity=0.261 Sum_probs=94.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
++.+++|+.+++..|.+ ..+|..|+.++.|+.||+.+| ++.+..+|..|..+..|+.|++++|.+--. +
T Consensus 75 issl~klr~lnvgmnrl--------~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~l--p 143 (264)
T KOG0617|consen 75 ISSLPKLRILNVGMNRL--------NILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEIL--P 143 (264)
T ss_pred hhhchhhhheecchhhh--------hcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccC--C
Confidence 67778888888888887 778888999999999999998 688888888888888888888888875432 6
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
..++++++|+.|.+..|++-.+|..++.+..|++|.+.+|. ++-.
T Consensus 144 ~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vl 188 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVL 188 (264)
T ss_pred hhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeec
Confidence 78888888888888888888888888888888888888887 6544
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=8.2e-10 Score=108.04 Aligned_cols=230 Identities=21% Similarity=0.289 Sum_probs=170.1
Q ss_pred HHHhhcCCCCceeeccCCCCCCHHHHH---HHHhcCCCeeEEEccCC--cchhhHHH-------HHHhhCCcCcEEEcCC
Q 003270 65 WRAASAHEDFWRCLNFENRKISVEQFE---DVCQRYPNATEVNIYGA--PAIHLLVM-------KAVSLLRNLEALTLGR 132 (835)
Q Consensus 65 W~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~L~l~~~--~~~~~~~~-------~~l~~~~~L~~L~l~~ 132 (835)
...........+.+++++.++..+... ..++..+.++..+++.. .....-+| +++..+++|++|+||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334444566778999999888765544 44677788898888872 11222233 3566788999999999
Q ss_pred cccChhhHHhh----cCCCCCCEEEecCCCCCcc-------------cccccccCCcccEEeccCcccccc--------c
Q 003270 133 GQLGDAFFHAL----ADCSMLKSLNVNDATLGNG-------------VQEIPINHDQLRRLEITKCRVMRV--------S 187 (835)
Q Consensus 133 ~~i~~~~~~~l----~~~~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~--------~ 187 (835)
|.+....++.| ..++.|++|.+.+|.+... .......-++||++....|++.+. .
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 99986655544 5799999999999987522 122344568999999999987543 3
Q ss_pred cCCCCCcEEEecccchH--------HHhhcCCCCcEEeecCCCCCCHH---HHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 188 IRCPQLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 188 ~~l~~L~~L~l~~~~i~--------~~~~~~~~L~~L~l~~~~~l~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
+..+.|+.+.++.|.|. ..+..|++|++|++.+|. ++.. .+...+..+++|++|++++|- +.+.+..
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~ 259 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAI 259 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc-cccccHH
Confidence 45789999999999775 567899999999999995 4432 344567788999999999998 7766555
Q ss_pred HH----HHhCCCCcEEecCCCC-------CCCccccCCCCCcEEecCCCCCC
Q 003270 257 EI----ALSCANLRILNSSYCP-------NISLESVRLPMLTVLQLHSCEGI 297 (835)
Q Consensus 257 ~~----~~~~~~L~~L~l~~~~-------~l~~~~~~~~~L~~L~l~~~~~~ 297 (835)
++ ....+.|+.|++.+|. .+.......+.|+.|++++| .+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 54 4457899999999997 12233446899999999998 55
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.7e-10 Score=109.74 Aligned_cols=191 Identities=17% Similarity=0.273 Sum_probs=114.2
Q ss_pred HHHHHhcC-CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccc
Q 003270 90 FEDVCQRY-PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI 168 (835)
Q Consensus 90 ~~~~~~~~-~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 168 (835)
+..++..| .+++++|++........+...++.|.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+.- +.
T Consensus 176 lae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG---~t---- 248 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG---FT---- 248 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc---cc----
Confidence 44444444 36899999995433445666789999999999999999999999999999999999998741 11
Q ss_pred cCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhc-CCCCCEEeCCCC
Q 003270 169 NHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATS-CPQLESLDMSNC 247 (835)
Q Consensus 169 ~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~-~~~L~~L~L~~~ 247 (835)
.|...-.+.+|+.|.+|+++.|...+ ..+...+.+ -++|+.|+++|+
T Consensus 249 -------------------------------~n~~~ll~~scs~L~~LNlsWc~l~~-~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 249 -------------------------------ENALQLLLSSCSRLDELNLSWCFLFT-EKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred -------------------------------hhHHHHHHHhhhhHhhcCchHhhccc-hhhhHHHhhhchhhhhhhhhhh
Confidence 12233445555555555555553222 222222222 145555555555
Q ss_pred CC-CChHHHHHHHHhCCCCcEEecCCCCCCCcc----ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCC
Q 003270 248 SC-VSDESLREIALSCANLRILNSSYCPNISLE----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319 (835)
Q Consensus 248 ~~-l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 319 (835)
.. +.+..+..+...|++|.+||+++|..+.+. +.+++.|++|.++.|..+.....-.+...+.|.+|++.+|
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 31 333344444445566666666655544332 3355666666666655554444444455556666666554
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.6e-10 Score=112.83 Aligned_cols=183 Identities=21% Similarity=0.136 Sum_probs=87.6
Q ss_pred hhhhccccceeeecCccccC---chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 572 SLRSLQNLTMLDLSYTFLTN---LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 572 ~~~~l~~L~~L~Ls~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
....|++++.||||.|-+.. +......+++|+.|+++.|. +......... ..+++|+.|.++.|.++-..+...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~--~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTT--LLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccch--hhhhhhheEEeccCCCCHHHHHHH
Confidence 34455555555555555553 22234455566666666555 2211111100 235566666666666665455555
Q ss_pred HhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccc
Q 003270 649 LAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQAR 728 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~ 728 (835)
+..+|+|+.|++..|..+... .....-++.|+.|++++.+.+..-..+..++
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~----------------------------~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIK----------------------------ATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred HHhCCcHHHhhhhccccccee----------------------------cchhhhhhHHhhccccCCccccccccccccc
Confidence 556666666666665421100 0000113445566666555444433455666
Q ss_pred cCccceEeccCCC--Cccccc-------cccccccEEecccccc--hhhhh--hcCCccceeecccCcCC
Q 003270 729 CFHLSSLNLSLSA--NLKEVD-------VACFNLCFLNLSNCCS--LETLK--LDCPKLTSLFLQSCNID 785 (835)
Q Consensus 729 ~~~L~~L~l~~~~--~l~~~~-------~~~~~L~~L~l~~c~~--l~~l~--~~~~~L~~L~l~~~~i~ 785 (835)
++.|+.|+++.++ .+...+ -.+++|+.|.+++++- ..++- ..+++|+.|.+..+.++
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6777777666532 111111 1345566666655542 22222 13456666665555544
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=5.2e-09 Score=121.25 Aligned_cols=339 Identities=19% Similarity=0.241 Sum_probs=191.7
Q ss_pred eeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCc--CcEEEcC-----------------------
Q 003270 77 CLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRN--LEALTLG----------------------- 131 (835)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~--L~~L~l~----------------------- 131 (835)
.++|++.+...+.|+.+|+.||.-.+++... .+..|++++|-.-.. -+..+.+
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~--Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~ 479 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEK--LIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE 479 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHH--HHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence 5678887767899999999999999998887 677777776532211 1111111
Q ss_pred CcccChhhHH---hhcC--CCCCCEEEecC-CCCCcccccccccCCcccEEeccCcccccccc--CCCCCcEEEecccc-
Q 003270 132 RGQLGDAFFH---ALAD--CSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEHLSLKRSN- 202 (835)
Q Consensus 132 ~~~i~~~~~~---~l~~--~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~L~~L~l~~~~- 202 (835)
.+.+.|...+ ..+. ..+.+..-... .... ..|. .......|.+.+-+|.+..+.. ..++|++|-+..|.
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~-~~~~-~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS-EIPQ-VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEECCcCcc-cccc-ccchhheeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 1122222111 0110 11112111111 1111 1222 2334678888888888766543 57789999998885
Q ss_pred -hH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---
Q 003270 203 -MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--- 274 (835)
Q Consensus 203 -i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--- 274 (835)
+. +.+..+|.|++||+++|..+. .+|..++++-+||+|+++++. +. ..|..+. ++..|.+|++..+.
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~-I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTG-IS-HLPSGLG-NLKKLIYLNLEVTGRLE 632 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCC-cc-ccchHHH-HHHhhheeccccccccc
Confidence 33 558889999999999986555 789999999999999999998 65 6677776 88999999999887
Q ss_pred CCCccccCCCCCcEEecCCCC-CCChhhHHHhhhccCccEEEccCCCccc-cccccCcccceeeccccccccchhhcccc
Q 003270 275 NISLESVRLPMLTVLQLHSCE-GITSASMAAISHSYMLEVLELDNCNLLT-SVSLELPRLQNIRLVHCRKFADLNLRAMM 352 (835)
Q Consensus 275 ~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~L~~L~~~~~~~l~~l~l~~~~ 352 (835)
.++.....+.+|++|.+..-. ..+......+..+.+|+.+......... .-.....++..+... +.+.+..
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~-------l~~~~~~ 705 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQS-------LSIEGCS 705 (889)
T ss_pred cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHh-------hhhcccc
Confidence 333344468999999998742 2233334445555666665554433200 000111222211111 0111111
Q ss_pred cc--eeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecC
Q 003270 353 LS--SIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 430 (835)
Q Consensus 353 l~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 430 (835)
.. ...+..+.+|+.|.+.++.+............... .++++..+.+.+|....+..+. ...|+|+.|.+..
T Consensus 706 ~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~-~f~~l~~~~~~~~~~~r~l~~~-----~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 706 KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL-CFPNLSKVSILNCHMLRDLTWL-----LFAPHLTSLSLVS 779 (889)
T ss_pred cceeecccccccCcceEEEEcCCCchhhcccccccchhh-hHHHHHHHHhhccccccccchh-----hccCcccEEEEec
Confidence 11 11566777788887777666532221111111100 1234444445555444433222 2346777777777
Q ss_pred CCCCccc
Q 003270 431 CEGLTVV 437 (835)
Q Consensus 431 ~~~l~~~ 437 (835)
|..++.+
T Consensus 780 ~~~~e~~ 786 (889)
T KOG4658|consen 780 CRLLEDI 786 (889)
T ss_pred ccccccC
Confidence 6655443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.4e-10 Score=112.32 Aligned_cols=129 Identities=26% Similarity=0.276 Sum_probs=74.3
Q ss_pred cCCCCCcEEEecccchH-----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCCh-HHHHHHHHh
Q 003270 188 IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD-ESLREIALS 261 (835)
Q Consensus 188 ~~l~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~ 261 (835)
..+|+|+.|+++.|.+. ..-..+++|+.|.+++| +++...+...+..+|+|+.|++.+|..+.- ..... .
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i 244 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---I 244 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---h
Confidence 34555555555555443 11224567777777777 466666666667777777777777741221 11111 3
Q ss_pred CCCCcEEecCCCCCCC----ccccCCCCCcEEecCCCCCCChhhHHH------hhhccCccEEEccCCCc
Q 003270 262 CANLRILNSSYCPNIS----LESVRLPMLTVLQLHSCEGITSASMAA------ISHSYMLEVLELDNCNL 321 (835)
Q Consensus 262 ~~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~------l~~~~~L~~L~l~~~~~ 321 (835)
+..|++|||++|.-+. ...+.++.|+.|.+..+ ++.+..... ...+++|+.|++..|++
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 4567777777776332 23556777777777765 444332222 23357777777777765
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=3.8e-09 Score=97.30 Aligned_cols=106 Identities=23% Similarity=0.202 Sum_probs=43.8
Q ss_pred CCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHH-hccccccEEecccccccchhhHHHHHhcCCCCC
Q 003270 551 CPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF-ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPA 629 (835)
Q Consensus 551 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 629 (835)
+.+|+.|++++|..... +.+..++.|++|++++|.++.+.+.+ ..+++|++|.+++|+ |.+... +..+..+++
T Consensus 41 l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~--l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNE--LEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCC--CGGGGG-TT
T ss_pred hcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHH--hHHHHcCCC
Confidence 45555556655554432 34556777777777777777765544 457777777777776 654321 223456777
Q ss_pred ccEEeCCCcccchH--HHHHHHhhCCCccEEEccC
Q 003270 630 LQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 630 L~~L~l~~n~~~~~--~~~~~l~~~~~L~~L~l~~ 662 (835)
|+.|++.+|.++.. .-...+..+|+|+.||-..
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88888887777642 2334466788888887654
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=4.3e-09 Score=96.95 Aligned_cols=133 Identities=23% Similarity=0.218 Sum_probs=53.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++.+++.|++.+|.++. +...-..+.+|+.|++++| .++. ++ .+..++.|+.|++++|...+..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--------Ie~L~~~l~~L~~L~Ls~N-~I~~--l~-~l~~L~~L~~L~L~~N~I~~i~-- 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--------IENLGATLDKLEVLDLSNN-QITK--LE-GLPGLPRLKTLDLSNNRISSIS-- 80 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S----T-T----TT--EEE--SS---S-C--
T ss_pred ccccccccccccccccccc--------ccchhhhhcCCCEEECCCC-CCcc--cc-CccChhhhhhcccCCCCCCccc--
Confidence 6778889999999999853 3221125788999999999 5654 33 3667899999999999865431
Q ss_pred Hhh-hhccccceeeecCccccCchH--HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCc
Q 003270 571 YSL-RSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG 638 (835)
Q Consensus 571 ~~~-~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n 638 (835)
+.+ ..+++|++|++++|++..+.. .+..+++|+.|++.+|| ++...--..+-+..+|+|+.||-..-
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 234 468999999999999987533 67789999999999999 76543322223466899999987553
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=4e-09 Score=100.61 Aligned_cols=135 Identities=23% Similarity=0.170 Sum_probs=105.6
Q ss_pred cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcc
Q 003270 520 DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESC 599 (835)
Q Consensus 520 ~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~ 599 (835)
......+.|+++|+|+| .++ .+-....-.|.++.|++++|.... ...+..+++|+.||||+|.++.+..+-..+
T Consensus 278 ~~~dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRT---VQNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred EecchHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceee---ehhhhhcccceEeecccchhHhhhhhHhhh
Confidence 33445677999999998 343 245556678999999999998654 345888999999999999999876666678
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
.++++|.+++|. +.+. ..++++-+|..||+++|+|....--..++.++-|+.+.+.+||--
T Consensus 352 GNIKtL~La~N~-iE~L-----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IETL-----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cCEeeeehhhhh-Hhhh-----hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 899999999987 5533 334678899999999999977545566888999999999999853
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.73 E-value=1.5e-08 Score=114.06 Aligned_cols=250 Identities=31% Similarity=0.470 Sum_probs=121.4
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCC-CCcCchh---hHhhhhccccceeeecCcc-ccC--chHHHh
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSC-QSIGPDG---LYSLRSLQNLTMLDLSYTF-LTN--LEPVFE 597 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~Ls~~~-~~~--l~~~~~ 597 (835)
++.|+.+.+..|..+.+.++......++.|+.|++++| ......+ ......+.+|+.|+++++. +++ +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666665655555555566666666666652 2222211 1223344555666666555 442 222233
Q ss_pred ccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCccc-chHHHHHHHhhCCCccEEEccCCCCCcccccccccc
Q 003270 598 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL-CQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 676 (835)
Q Consensus 598 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 676 (835)
.|++|++|.+.+|..+++.+...+. ..++.|++|++++|.. ++..+......|++|+++.+..+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~--~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------- 333 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIA--ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------- 333 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHH--HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----------
Confidence 3556666665555555555555442 3355566666665532 2333444444455555544443321
Q ss_pred CCCCCCccccccccCCCCCcccccCccccccccccccCCCCcc--ccccCcccccCccceEeccCCCCcccccccccccc
Q 003270 677 QPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIR--KVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLC 754 (835)
Q Consensus 677 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~ 754 (835)
+..++.+.+.++.... ....-....|++++.+.+..+. ..... .
T Consensus 334 ---------------------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~------~ 379 (482)
T KOG1947|consen 334 ---------------------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG------L 379 (482)
T ss_pred ---------------------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc------h
Confidence 0111112222211111 0000012233333333333333 21111 1
Q ss_pred EEecccccch-hhhhh---cCCccceeecccCc-CChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHh
Q 003270 755 FLNLSNCCSL-ETLKL---DCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAA 821 (835)
Q Consensus 755 ~L~l~~c~~l-~~l~~---~~~~L~~L~l~~~~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~ 821 (835)
.+.+.+|+.+ ..+.. .+.+++.|+++.|. .++..+-.....+..++.+++++|+.+.......+...
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 3555666666 33331 23448888888888 55454443223377888888888888887766655444
No 36
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.58 E-value=8.1e-08 Score=108.17 Aligned_cols=258 Identities=30% Similarity=0.449 Sum_probs=170.7
Q ss_pred CCcceEecccCCCCcc-chhhhhhhcCCCccEEeccCCCCcCchh-hHhhhhccccceeeecCc-cc-cC----chHHHh
Q 003270 526 PLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQSIGPDG-LYSLRSLQNLTMLDLSYT-FL-TN----LEPVFE 597 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~Ls~~-~~-~~----l~~~~~ 597 (835)
..++.+.+..+..... .........++.|+.+.+.+|..+...+ ......++.|++|+++++ .. .. ......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 3455555554432222 2233445568999999999998887654 355678899999999983 22 21 223566
Q ss_pred ccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc-cchHHHHHHHhhCCCccEEEccCCCCCcccccccccc
Q 003270 598 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT-LCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 676 (835)
Q Consensus 598 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 676 (835)
.|++|+.+++++|..+++.....+.. .|++|+.|.+.+|. +++.++......|++|++|++++|..+.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~--~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~------- 311 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALAS--RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS------- 311 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHh--hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH-------
Confidence 78999999999999899888887743 38999999999887 888889898999999999999999876332
Q ss_pred CCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCCccc-c-----cccc
Q 003270 677 QPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKE-V-----DVAC 750 (835)
Q Consensus 677 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~-~-----~~~~ 750 (835)
.+..+ ..+|++++.+.+.....|..++.+.+.++..... . ...+
T Consensus 312 -----------------------------~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~ 361 (482)
T KOG1947|consen 312 -----------------------------GLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSC 361 (482)
T ss_pred -----------------------------HHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcC
Confidence 13333 3445555554333344455566666555443331 1 1234
Q ss_pred ccccEEecccccchhhhhhcCCccceeecccCc-CChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHhCCcchhhh
Q 003270 751 FNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIF 829 (835)
Q Consensus 751 ~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~p~l~~l~ 829 (835)
+.++.+.+..|. ..... ..+.+.+|+ ++ .++......+..++.|+++.|...++..+......|..++.+.
T Consensus 362 ~~l~~~~l~~~~-~~~~~------~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 362 PKLTDLSLSYCG-ISDLG------LELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred CCcchhhhhhhh-ccCcc------hHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCC
Confidence 444444444443 11111 146667777 66 6677666677679999999999988887777765565555554
Q ss_pred c
Q 003270 830 S 830 (835)
Q Consensus 830 ~ 830 (835)
+
T Consensus 434 ~ 434 (482)
T KOG1947|consen 434 L 434 (482)
T ss_pred c
Confidence 3
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=4.1e-08 Score=93.85 Aligned_cols=83 Identities=27% Similarity=0.291 Sum_probs=58.9
Q ss_pred hhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 574 RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
..+..|+++|||+|.|+.+.+++.-.|.++.|++++|. +....- + ..+++|+.||+++|.++. +..+=..+-
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--L---a~L~~L~~LDLS~N~Ls~--~~Gwh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--L---AELPQLQLLDLSGNLLAE--CVGWHLKLG 352 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--h---hhcccceEeecccchhHh--hhhhHhhhc
Confidence 34567888888888888887777778888888888877 554432 2 457788888888887764 334444566
Q ss_pred CccEEEccCCC
Q 003270 654 HLTHVSLNGCG 664 (835)
Q Consensus 654 ~L~~L~l~~~~ 664 (835)
++++|.+.+|.
T Consensus 353 NIKtL~La~N~ 363 (490)
T KOG1259|consen 353 NIKTLKLAQNK 363 (490)
T ss_pred CEeeeehhhhh
Confidence 77777777763
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.52 E-value=8.3e-07 Score=84.02 Aligned_cols=182 Identities=20% Similarity=0.283 Sum_probs=105.3
Q ss_pred HHHHHHhcCCCeeEEEccCCcchhh----HHHHHHhhCCcCcEEEcCCcccC---hhh-------HHhhcCCCCCCEEEe
Q 003270 89 QFEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQLG---DAF-------FHALADCSMLKSLNV 154 (835)
Q Consensus 89 ~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~---~~~-------~~~l~~~~~L~~L~l 154 (835)
.+...+.....++.++++| |.+.. |+...+.+-.+|+..+++.-... +.+ .+++.+||+|+..++
T Consensus 21 ~v~eel~~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 21 GVVEELEMMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHHHhhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 3444455567788888888 45554 44455566677888888754322 222 345567899999999
Q ss_pred cCCCCCccccc----ccccCCcccEEeccCcccccccc-----------------CCCCCcEEEecccchH--------H
Q 003270 155 NDATLGNGVQE----IPINHDQLRRLEITKCRVMRVSI-----------------RCPQLEHLSLKRSNMA--------Q 205 (835)
Q Consensus 155 ~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~-----------------~l~~L~~L~l~~~~i~--------~ 205 (835)
++|.+....|+ .+..-+.|+||.+++|.+..+.+ +-|.|++.....|.+. .
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 99888766554 34556888888888887765432 3466666666665443 1
Q ss_pred HhhcCCCCcEEeecCCCCCCHHHHH----HHHhcCCCCCEEeCCCCCCCChHHHHHHHH---hCCCCcEEecCCC
Q 003270 206 AVLNCPLLHLLDIASCHKLSDAAIR----LAATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYC 273 (835)
Q Consensus 206 ~~~~~~~L~~L~l~~~~~l~~~~l~----~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~ 273 (835)
.+..-.+|+++.+..| .+...++. ..+..+++|+.||++.|. ++..+...++. .++.|++|.+.+|
T Consensus 180 ~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 180 LLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccch
Confidence 2223346666666665 34433222 123445666666666665 44333333321 2333444444444
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.51 E-value=1.6e-07 Score=109.06 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=70.8
Q ss_pred hCCcCcEEEcCCcc--cChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc---CCCCCcE
Q 003270 121 LLRNLEALTLGRGQ--LGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEH 195 (835)
Q Consensus 121 ~~~~L~~L~l~~~~--i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~l~~L~~ 195 (835)
.+++|++|-+.+|. +.....+.|..++.|++||+++|.-.+.+|+.++++-+||+|+++++.+..++. ++..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 34467777776664 333334446667777777777776666777777777777777777777665542 4555566
Q ss_pred EEecccch----HHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCC
Q 003270 196 LSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 245 (835)
Q Consensus 196 L~l~~~~i----~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~ 245 (835)
|++..+.- +.....+++||+|.+..-..-.+...-..+.++.+|+.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 66555432 234444666666666553211112222233444555554443
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=2.8e-08 Score=103.44 Aligned_cols=153 Identities=22% Similarity=0.177 Sum_probs=119.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..|..|+.+.++.|.+ ..+|..+.++..|++++|+.| ++.. +|..+..|| |+.|.+++|+.... +
T Consensus 94 ~~~f~~Le~liLy~n~~--------r~ip~~i~~L~~lt~l~ls~N-qlS~--lp~~lC~lp-Lkvli~sNNkl~~l--p 159 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCI--------RTIPEAICNLEALTFLDLSSN-QLSH--LPDGLCDLP-LKVLIVSNNKLTSL--P 159 (722)
T ss_pred HHHHHHHHHHHHHhccc--------eecchhhhhhhHHHHhhhccc-hhhc--CChhhhcCc-ceeEEEecCccccC--C
Confidence 34455666777777776 677888888899999999987 4532 555454444 88999998886654 6
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..++....|..||.+.|++..+|..++++.+|+.|+++.|. +... ++.+ . .-.|..||++.|+++. +|-.|.
T Consensus 160 ~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~l-p~El---~-~LpLi~lDfScNkis~--iPv~fr 231 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDL-PEEL---C-SLPLIRLDFSCNKISY--LPVDFR 231 (722)
T ss_pred cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhC-CHHH---h-CCceeeeecccCceee--cchhhh
Confidence 77888899999999999999999999999999999999988 5544 4443 2 3468899999999974 888899
Q ss_pred hCCCccEEEccCCCC
Q 003270 651 YCTHLTHVSLNGCGN 665 (835)
Q Consensus 651 ~~~~L~~L~l~~~~~ 665 (835)
.+.+|++|-|.+||.
T Consensus 232 ~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhheeeeeccCCC
Confidence 999999999998883
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=4.1e-07 Score=68.55 Aligned_cols=58 Identities=38% Similarity=0.526 Sum_probs=27.6
Q ss_pred ccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc
Q 003270 578 NLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~ 639 (835)
+|++|++++|++..+|. .|.++++|++|++++|. ++...+..+ ..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f---~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAF---SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTT---TTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHH---cCCCCCCEEeCcCCc
Confidence 44455555555554443 44445555555555444 444433332 444555555555544
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=1.6e-06 Score=98.89 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=85.9
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
.|.++.|...+.. ....++.|++++ +.+.+.++..+..+++|+.|++++|.+.+.+|..++.+++|+.|+
T Consensus 403 ~w~Gv~C~~~~~~---------~~~~v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~Ld 472 (623)
T PLN03150 403 PWSGADCQFDSTK---------GKWFIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472 (623)
T ss_pred ccccceeeccCCC---------CceEEEEEECCC-CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 6999998532211 012489999999 578888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCcccc
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVM 184 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 184 (835)
+++|.+++.+|+.+..+++|++|++++|.+.
T Consensus 473 Ls~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 9999999999999988888888888887664
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=8e-07 Score=66.94 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=44.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 183 (835)
++|++|++++|.+...-++.|..+++|++|++++|.+....+..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888877766667777788888888888877655555677777777777766653
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=2e-06 Score=82.64 Aligned_cols=206 Identities=21% Similarity=0.205 Sum_probs=124.6
Q ss_pred ccEEeccCCCCcCchh-hHhh-hhccccceeeecCccccC---chHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 554 IESLILMSCQSIGPDG-LYSL-RSLQNLTMLDLSYTFLTN---LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 554 L~~L~l~~~~~~~~~~-~~~~-~~l~~L~~L~Ls~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
++-+.+.+|. +..+| ...+ ..++.++++||.+|.++. +...+.++|.|+.|+|+.|+ +...+ ..+. ....
T Consensus 47 ~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I-~~lp--~p~~ 121 (418)
T KOG2982|consen 47 LELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDI-KSLP--LPLK 121 (418)
T ss_pred hhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCcc-ccCc--cccc
Confidence 4444455554 22222 2333 356899999999999997 44578899999999999998 65432 1110 1356
Q ss_pred CccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccc
Q 003270 629 ALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQ 708 (835)
Q Consensus 629 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 708 (835)
+|+.|.+.+..+.-......+..+|.+++|.++.|.--. + ++- ....++-.+.++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq-~----------n~D--------------d~c~e~~s~~v~ 176 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ-L----------NLD--------------DNCIEDWSTEVL 176 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh-h----------ccc--------------cccccccchhhh
Confidence 899999998877654566778889999999999884110 0 000 000011122345
Q ss_pred cccccCCCCccccccCcccccCccceEeccCCCCccccccccccccEEecccccchhhhh-----hcCCccceeecccCc
Q 003270 709 NLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLK-----LDCPKLTSLFLQSCN 783 (835)
Q Consensus 709 ~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-----~~~~~L~~L~l~~~~ 783 (835)
+++..+|+..... +...+...++++..+-+.+|| +++.. +.+|++.-|+++.++
T Consensus 177 tlh~~~c~~~~w~--------------------~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~ 235 (418)
T KOG2982|consen 177 TLHQLPCLEQLWL--------------------NKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN 235 (418)
T ss_pred hhhcCCcHHHHHH--------------------HHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc
Confidence 5555555432221 111223346667777777775 23322 346777788888888
Q ss_pred CChhHHHHHHhcCCCcceeecccccCC
Q 003270 784 IDEEGVESAITQCGMLETLDVRFCPKI 810 (835)
Q Consensus 784 i~~~~l~~~~~~~~~L~~l~l~~c~~l 810 (835)
|..=.--..+.+|++|..|.++.+|..
T Consensus 236 idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 236 IDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccHHHHHHHcCCchhheeeccCCccc
Confidence 742223345778888888888888743
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=3.1e-06 Score=96.49 Aligned_cols=108 Identities=23% Similarity=0.260 Sum_probs=79.0
Q ss_pred ccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccE
Q 003270 554 IESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632 (835)
Q Consensus 554 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~ 632 (835)
++.|++++|...+.. +..++.+++|+.|+|++|.+.+ +|..++.+++|+.|++++|. +++..+..+ +.+++|+.
T Consensus 420 v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l---~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESL---GQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CCCCCchHH---hcCCCCCE
Confidence 666777777654443 5677888888888888888874 77778888888888888887 777766665 67788888
Q ss_pred EeCCCcccchHHHHHHHhh-CCCccEEEccCCCCCc
Q 003270 633 LDLSYGTLCQSAIEELLAY-CTHLTHVSLNGCGNMH 667 (835)
Q Consensus 633 L~l~~n~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~ 667 (835)
|++++|++++ .+|..+.. ..++..+++.+|+.+.
T Consensus 495 L~Ls~N~l~g-~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 495 LNLNGNSLSG-RVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EECcCCcccc-cCChHHhhccccCceEEecCCcccc
Confidence 8888888877 56666654 3466778888776543
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=2.2e-06 Score=93.38 Aligned_cols=189 Identities=22% Similarity=0.277 Sum_probs=119.9
Q ss_pred EEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCC-cccEEeccCcccccc---ccCCCCCcEEEecccc
Q 003270 127 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHD-QLRRLEITKCRVMRV---SIRCPQLEHLSLKRSN 202 (835)
Q Consensus 127 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~ 202 (835)
.+++..+.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|.+..+ ...+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 46666665532222 3334567777777777764 3555555553 778888888777765 2467788888888877
Q ss_pred hHHHh---hcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCC
Q 003270 203 MAQAV---LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS 277 (835)
Q Consensus 203 i~~~~---~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~ 277 (835)
+.... +..+.|+.|++++| ++. .+|........|++|.+++|..+. .+..+. .+.++..+.+.++. .++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~--~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~-~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KIS--DLPPEIELLSALEELDLSNNSIIE--LLSSLS-NLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccc--cCchhhhhhhhhhhhhhcCCccee--cchhhh-hcccccccccCCceeeecc
Confidence 76322 27777888888887 455 345554555668888888874122 233333 66667777766665 234
Q ss_pred ccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccccc
Q 003270 278 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 278 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
...+.++++++|+++++ .+..... ++...++++|+++++......+
T Consensus 249 ~~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceeccccc-ccccccc--ccccCccCEEeccCccccccch
Confidence 66677777888888775 5554433 6777788888888777655444
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=2e-07 Score=99.88 Aligned_cols=127 Identities=29% Similarity=0.311 Sum_probs=98.3
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccE
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKV 604 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~ 604 (835)
..|...+.++| .+.. +-..+.-++.|+.|++++|++... ..+..|+.|+.|||++|.+.-+|. ...+|. |..
T Consensus 164 n~L~~a~fsyN-~L~~--mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSYN-RLVL--MDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhHhhhhcchh-hHHh--HHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-hee
Confidence 45667777777 3432 445566778899999999987653 478889999999999999998877 555666 999
Q ss_pred EecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 605 LKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 605 L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
|++++|. ++.. -.+.++.+|+.||+++|-+++..--+.+..+..|+.|++.|||-
T Consensus 237 L~lrnN~-l~tL-----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNA-LTTL-----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccH-HHhh-----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999988 5533 23467889999999999887754445677788999999999884
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=6.6e-06 Score=93.34 Aligned_cols=147 Identities=22% Similarity=0.339 Sum_probs=91.6
Q ss_pred CcCcEEEcCCcc-cChhhHHhhc-CCCCCCEEEecCCCCC-cccccccccCCcccEEeccCcccccccc--CCCCCcEEE
Q 003270 123 RNLEALTLGRGQ-LGDAFFHALA-DCSMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEHLS 197 (835)
Q Consensus 123 ~~L~~L~l~~~~-i~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~L~~L~ 197 (835)
.+|++|++++.. +....+..++ .+|+|++|.+++-.+. +.+.....++++|++||++++++..+.+ ++++|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 568888887753 3444555554 5788888888876553 3345566677788888888777776543 577777777
Q ss_pred ecccchH-----HHhhcCCCCcEEeecCCCCCCHHHHHH----HHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEE
Q 003270 198 LKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRL----AATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 268 (835)
Q Consensus 198 l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~----~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L 268 (835)
+.+-.+. ..+-++++|++||++.-....+..+.. .-..+|+|+.||.+++. +.......+...-++|+.+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQQI 280 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHhhh
Confidence 7655444 355667777777777643333221111 11335777777777777 6666666666555555544
Q ss_pred ec
Q 003270 269 NS 270 (835)
Q Consensus 269 ~l 270 (835)
-.
T Consensus 281 ~~ 282 (699)
T KOG3665|consen 281 AA 282 (699)
T ss_pred hh
Confidence 43
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=3.5e-06 Score=80.96 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=98.6
Q ss_pred hhCCcCcEEEcCCcccChh--hHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEE
Q 003270 120 SLLRNLEALTLGRGQLGDA--FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 197 (835)
Q Consensus 120 ~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~ 197 (835)
..++.++.+|+.+|.|++. +...+.++|.|++|+++.|.+...+...+.-..+|++|-+.+..+.--
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~----------- 136 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT----------- 136 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh-----------
Confidence 3466777788888877743 555566778888888888877665555444455555555555443210
Q ss_pred ecccchHHHhhcCCCCcEEeecCCC----CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 003270 198 LKRSNMAQAVLNCPLLHLLDIASCH----KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 273 (835)
Q Consensus 198 l~~~~i~~~~~~~~~L~~L~l~~~~----~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 273 (835)
.....+..+|.+++|+++.|. ++.+.... .--+.+++|.+..|..........+.+.++++..+-+..|
T Consensus 137 ----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 137 ----QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred ----hhhhhhhcchhhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 111334444555555444441 00000000 0112344444545541111122223345566666666665
Q ss_pred C--CC--CccccCCCCCcEEecCCCCCCCh-hhHHHhhhccCccEEEccCCCcccc
Q 003270 274 P--NI--SLESVRLPMLTVLQLHSCEGITS-ASMAAISHSYMLEVLELDNCNLLTS 324 (835)
Q Consensus 274 ~--~l--~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~ 324 (835)
+ .. -.....+|.+.-|.+..+ ++.. ....++.+++.|..|.++++++...
T Consensus 210 PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 210 PLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence 4 11 112334566666666664 4443 4557788889999999988876654
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.05 E-value=2.6e-06 Score=92.72 Aligned_cols=150 Identities=28% Similarity=0.314 Sum_probs=107.3
Q ss_pred CCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 575 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 575 (835)
+|+.++++.|++ ..+|..+..+++|+.|++++| .+.+ ++......++|+.|++++|..... +.....
T Consensus 141 nL~~L~l~~N~i--------~~l~~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~~L~~L~ls~N~i~~l--~~~~~~ 207 (394)
T COG4886 141 NLKELDLSDNKI--------ESLPSPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLSNLNNLDLSGNKISDL--PPEIEL 207 (394)
T ss_pred hcccccccccch--------hhhhhhhhccccccccccCCc-hhhh--hhhhhhhhhhhhheeccCCccccC--chhhhh
Confidence 677788888877 555566777888888888887 4544 555455778888888888875443 333355
Q ss_pred ccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCc
Q 003270 576 LQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHL 655 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L 655 (835)
..+|++|.+++|.+...+..+..+.++..+.+.+|+ +... +.. ++.+++++.|++++|.+++ ++. +....++
T Consensus 208 ~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~-~~~---~~~l~~l~~L~~s~n~i~~--i~~-~~~~~~l 279 (394)
T COG4886 208 LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDL-PES---IGNLSNLETLDLSNNQISS--ISS-LGSLTNL 279 (394)
T ss_pred hhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeec-cch---hccccccceeccccccccc--ccc-ccccCcc
Confidence 666888888888766666777888888888888877 4432 122 2567778888998888876 333 7778888
Q ss_pred cEEEccCCCCC
Q 003270 656 THVSLNGCGNM 666 (835)
Q Consensus 656 ~~L~l~~~~~~ 666 (835)
+.|+++++...
T Consensus 280 ~~L~~s~n~~~ 290 (394)
T COG4886 280 RELDLSGNSLS 290 (394)
T ss_pred CEEeccCcccc
Confidence 88888887643
No 51
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.03 E-value=4.4e-07 Score=94.80 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=101.8
Q ss_pred CcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc
Q 003270 497 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 576 (835)
Q Consensus 497 L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 576 (835)
|+.+.+++|++ +.+|..++..+.|..||.+.| ++ ..++..+.++.+|+.|++..|+.... ++.+..
T Consensus 145 Lkvli~sNNkl--------~~lp~~ig~~~tl~~ld~s~n-ei--~slpsql~~l~slr~l~vrRn~l~~l--p~El~~- 210 (722)
T KOG0532|consen 145 LKVLIVSNNKL--------TSLPEEIGLLPTLAHLDVSKN-EI--QSLPSQLGYLTSLRDLNVRRNHLEDL--PEELCS- 210 (722)
T ss_pred ceeEEEecCcc--------ccCCcccccchhHHHhhhhhh-hh--hhchHHhhhHHHHHHHHHhhhhhhhC--CHHHhC-
Confidence 55666777777 777888888899999999998 44 34788889999999999999987655 667774
Q ss_pred cccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc
Q 003270 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~ 639 (835)
=.|..||+|.|+++.||..|.++..|++|.|.+|+ +..- +.+++.-+...-.++|++.-|+
T Consensus 211 LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCC-hHHHHhccceeeeeeecchhcc
Confidence 45889999999999999999999999999999999 7643 5555555666667788887774
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.85 E-value=0.00013 Score=69.62 Aligned_cols=197 Identities=18% Similarity=0.277 Sum_probs=135.1
Q ss_pred ceeeccCCCCCCHHHHHHHHh---cCCCeeEEEccCC--cchhh-------HHHHHHhhCCcCcEEEcCCcccChhhHHh
Q 003270 75 WRCLNFENRKISVEQFEDVCQ---RYPNATEVNIYGA--PAIHL-------LVMKAVSLLRNLEALTLGRGQLGDAFFHA 142 (835)
Q Consensus 75 ~~~l~~~~~~~~~~~~~~~~~---~~~~l~~L~l~~~--~~~~~-------~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 142 (835)
...+++++..+..+....++. .-.+++..+++.. ....+ .+.+++..|++|+..++++|.+....|..
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 367888888888777776664 4445666666651 11111 23456778999999999999988765554
Q ss_pred ----hcCCCCCCEEEecCCCCCcc----cc---------cccccCCcccEEeccCccccccc--------cCCCCCcEEE
Q 003270 143 ----LADCSMLKSLNVNDATLGNG----VQ---------EIPINHDQLRRLEITKCRVMRVS--------IRCPQLEHLS 197 (835)
Q Consensus 143 ----l~~~~~L~~L~l~~~~~~~~----~~---------~~~~~l~~L~~L~l~~~~~~~~~--------~~l~~L~~L~ 197 (835)
++.-+.|++|.+++|.+... +. ....+-+.|++.....|++-... ..-.+|+++.
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vk 191 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVK 191 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEE
Confidence 45778999999999986421 11 22334588999999988875432 1236899999
Q ss_pred ecccchH---------HHhhcCCCCcEEeecCCCCCCHH---HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHh----
Q 003270 198 LKRSNMA---------QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALS---- 261 (835)
Q Consensus 198 l~~~~i~---------~~~~~~~~L~~L~l~~~~~l~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~---- 261 (835)
+..|.|. .-+..+++|++|++.+|. ++-. .+...+...+.|++|.+..|- ++..+..++...
T Consensus 192 i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~ 269 (388)
T COG5238 192 IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEK 269 (388)
T ss_pred eeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhh
Confidence 9999886 235678999999999985 4422 234455667889999999998 777777666533
Q ss_pred -CCCCcEEecCCC
Q 003270 262 -CANLRILNSSYC 273 (835)
Q Consensus 262 -~~~L~~L~l~~~ 273 (835)
.++|+.|...+|
T Consensus 270 ~~p~l~~L~~~Yn 282 (388)
T COG5238 270 FVPNLMPLPGDYN 282 (388)
T ss_pred cCCCccccccchh
Confidence 344555555444
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=2e-05 Score=89.54 Aligned_cols=137 Identities=26% Similarity=0.255 Sum_probs=102.0
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCch--HHHhcccc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE--PVFESCLQ 601 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~--~~~~~~~~ 601 (835)
.+|+|+.|.+++= .+..+.+.....++|+|..|++++++... ...++.+++|+.|.+.+=.+..-. ..+.++++
T Consensus 146 ~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 146 MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccC---cHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 5899999999984 56666677778889999999999987544 357888899999988887777522 25667899
Q ss_pred ccEEecccccccchh-hHHH-HHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 602 LKVLKLQACKYLTNT-SLES-LYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 602 L~~L~l~~~~~l~~~-~~~~-l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
|+.|++|.-....+. .+.. +.+-..+|.|+.||+|++.+.+..+...+..-++|+.+..-+|.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 999999976544333 2222 23335689999999999998887777777778888888766554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=8.7e-05 Score=77.33 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=22.4
Q ss_pred hCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCcccc
Q 003270 391 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 438 (835)
Q Consensus 391 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 438 (835)
.|.+++.|++++| .++.. | .-.++|++|.+++|..++.++
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P------~LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-P------VLPNELTEITIENCNNLTTLP 89 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-C------CCCCCCcEEEccCCCCcccCC
Confidence 3567777777775 55432 1 122357777777666555443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=5.2e-05 Score=51.96 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=25.2
Q ss_pred cccceeeecCccccCchHHHhccccccEEecccccccch
Q 003270 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTN 615 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 615 (835)
++|++|++++|+++.+|+.++++++|+.|++++|+ +++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCC
Confidence 35677777777777776667777777777777776 554
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=9.9e-06 Score=88.24 Aligned_cols=83 Identities=36% Similarity=0.453 Sum_probs=43.1
Q ss_pred hhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH-Hhh
Q 003270 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL-LAY 651 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~-l~~ 651 (835)
+..+++|+.|++++|.|+.+.. +..++.|+.|++++|+ ++... .+..+..|+.+++++|++... ... ...
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-----~~~~l~~L~~l~l~~n~i~~i--e~~~~~~ 184 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDIS-----GLESLKSLKLLDLSYNRIVDI--ENDELSE 184 (414)
T ss_pred hhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhcc-----CCccchhhhcccCCcchhhhh--hhhhhhh
Confidence 4455566666666666554422 3334446666666665 43221 223355666666666666542 111 355
Q ss_pred CCCccEEEccCCC
Q 003270 652 CTHLTHVSLNGCG 664 (835)
Q Consensus 652 ~~~L~~L~l~~~~ 664 (835)
+.+++.+++.+|.
T Consensus 185 ~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 185 LISLEELDLGGNS 197 (414)
T ss_pred ccchHHHhccCCc
Confidence 6666666666654
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.53 E-value=0.00017 Score=75.17 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=52.9
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCc-ccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n-~~~~~~~~~~l 649 (835)
..+..+.+++.|++++|.+..+|. -..+|++|.+++|.+++.. +..+ .++|+.|++++| .+.. +|
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsL-P~~L-----P~nLe~L~Ls~Cs~L~s--LP--- 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTL-PGSI-----PEGLEKLTVCHCPEISG--LP--- 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccC-Cchh-----hhhhhheEccCcccccc--cc---
Confidence 446668999999999999888872 2347999999998877543 2222 457889999888 4432 33
Q ss_pred hhCCCccEEEccC
Q 003270 650 AYCTHLTHVSLNG 662 (835)
Q Consensus 650 ~~~~~L~~L~l~~ 662 (835)
.+|++|++.+
T Consensus 112 ---~sLe~L~L~~ 121 (426)
T PRK15386 112 ---ESVRSLEIKG 121 (426)
T ss_pred ---cccceEEeCC
Confidence 4577777764
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=1.5e-05 Score=86.80 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=71.0
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc--CCCCCcEEEe
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEHLSL 198 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~L~~L~l 198 (835)
.+..++.+.+..|.+.. +...+..+++|+.|++.+|.+.. +...+..+++|++|++++|.|..+.+ .++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34455555566665553 23345566777777777776643 32324556677777777776665542 4556666677
Q ss_pred cccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHH-HhcCCCCCEEeCCCCC
Q 003270 199 KRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLA-ATSCPQLESLDMSNCS 248 (835)
Q Consensus 199 ~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~-~~~~~~L~~L~L~~~~ 248 (835)
++|.|. ..+..++.|+.+++++|. +.. +... ...+.+++.+.+.+|.
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~-i~~--ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNR-IVD--IENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcch-hhh--hhhhhhhhccchHHHhccCCc
Confidence 666666 334446666677776663 331 2211 3556666666666666
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=1.1e-05 Score=87.03 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=64.6
Q ss_pred eeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccc-cccCCcccEEec
Q 003270 100 ATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEI-PINHDQLRRLEI 178 (835)
Q Consensus 100 l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l 178 (835)
+...+++. |.+. .+.+++.-++.|+.|+|++|++++.. .+..|++|++|||++|.+. .+|.. ..++. |..|.+
T Consensus 166 L~~a~fsy-N~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSY-NRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred Hhhhhcch-hhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 34444444 2222 34556666777777777777776533 5667777777777777664 23332 22222 666666
Q ss_pred cCcccccccc--CCCCCcEEEecccchH-----HHhhcCCCCcEEeecCCC
Q 003270 179 TKCRVMRVSI--RCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCH 222 (835)
Q Consensus 179 ~~~~~~~~~~--~l~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~ 222 (835)
.+|.+..+.+ ++.+|+.||+++|-+. ..+..+..|++|+|.+|+
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6665544322 4555666666655444 233444555555555554
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.16 E-value=0.00072 Score=46.32 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=26.2
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCC
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
++|++|++++|.|++ ++..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 467888888888874 5556778888888888888765
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.10 E-value=0.00055 Score=62.71 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=29.7
Q ss_pred cCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccc
Q 003270 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR 185 (835)
Q Consensus 124 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 185 (835)
+...+||++|.+.. .+.|..++.|.+|.+++|+++..-|.....+++|..|.+.+|.+..
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 34455555555542 1233445555666666665554444444444455555555554443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.04 E-value=0.00096 Score=61.17 Aligned_cols=111 Identities=22% Similarity=0.187 Sum_probs=70.6
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH--HHhcccccc
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLK 603 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~ 603 (835)
.+...+|+++|.... -..+..++.|.+|.+.+|+.+.- .+.--.-+++|..|.+.+|.+..+.+ -+..|++|+
T Consensus 42 d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchhh----cccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 345567777774222 12345667777888877774432 23333345778888888888776544 466788888
Q ss_pred EEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 604 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
+|.+-+|+ ++...--..+-+..+++|+.||+.+-.-.+
T Consensus 117 ~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 117 YLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred eeeecCCc-hhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 88888888 654433322334678888888888765544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00029 Score=67.47 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=77.7
Q ss_pred hhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCc--ccc-CchHHHhccccccEEecccccccchhhHHH
Q 003270 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT--FLT-NLEPVFESCLQLKVLKLQACKYLTNTSLES 620 (835)
Q Consensus 544 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~--~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 620 (835)
+......+..|+.+.+.++..++. ..+..+++|++|.+|.| ++. +++.....+++|+++++++|+ +.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~--lst 108 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD--LST 108 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc--ccc
Confidence 333344555677777777665553 35677889999999999 555 366667778999999999988 664 333
Q ss_pred HHhcCCCCCccEEeCCCcccchH--HHHHHHhhCCCccEEEccCC
Q 003270 621 LYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNGC 663 (835)
Q Consensus 621 l~~~~~~~~L~~L~l~~n~~~~~--~~~~~l~~~~~L~~L~l~~~ 663 (835)
+..+..+.+|..|++.+|..+.. .-...|.-+++|+.|+-...
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 33346678888999988865531 23355666788888776543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00019 Score=68.71 Aligned_cols=99 Identities=19% Similarity=0.321 Sum_probs=63.9
Q ss_pred CcccEEeccCcccccc--ccCCCCCcEEEecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCC
Q 003270 171 DQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSN 246 (835)
Q Consensus 171 ~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~ 246 (835)
.+.+.|+..+|.+.++ ..+++.|++|.|+-|.|+ ..+..|++|++|+|..| .+.+-.--..+.++++|+.|.|..
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 3344444444444443 246777777777777776 67788889999999887 466555456778889999998888
Q ss_pred CCCCChHHH---HHHHHhCCCCcEEec
Q 003270 247 CSCVSDESL---REIALSCANLRILNS 270 (835)
Q Consensus 247 ~~~l~~~~~---~~~~~~~~~L~~L~l 270 (835)
|+.-+..+. ..+...+++|++||=
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhccC
Confidence 774332221 123345677776663
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.00026 Score=67.82 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=53.0
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH--HHhccccc
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQL 602 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L 602 (835)
+.+.+.|+..+| ++.|- .+...++.|+.|.++-|...+ ...+..|+.|++|+|..|.|.++.+ .+.++++|
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 455666777777 55542 223466777777777766443 3466777777777777777776654 56677777
Q ss_pred cEEeccccccc
Q 003270 603 KVLKLQACKYL 613 (835)
Q Consensus 603 ~~L~l~~~~~l 613 (835)
+.|-|..|+..
T Consensus 91 r~LWL~ENPCc 101 (388)
T KOG2123|consen 91 RTLWLDENPCC 101 (388)
T ss_pred hhHhhccCCcc
Confidence 77777777633
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.65 E-value=0.00056 Score=58.39 Aligned_cols=107 Identities=16% Similarity=0.092 Sum_probs=51.7
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh-hccccceeeecCccccCchHHHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR-SLQNLTMLDLSYTFLTNLEPVFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~ 606 (835)
+-.+++++|+-+--......+.....|+..++++|.+-.. +..|. .++..+.|++++|.++++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f--p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF--PKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC--CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4455666663111111222233334455556666554332 22332 33456666666666666666666666666666
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
++.|+ +... ++.+ ..+.++-.|+..+|.+.
T Consensus 107 l~~N~-l~~~-p~vi---~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNP-LNAE-PRVI---APLIKLDMLDSPENARA 136 (177)
T ss_pred cccCc-cccc-hHHH---HHHHhHHHhcCCCCccc
Confidence 66666 3322 2222 12445555555555443
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.45 E-value=0.0012 Score=56.45 Aligned_cols=103 Identities=24% Similarity=0.304 Sum_probs=51.3
Q ss_pred ccEEeccCCCCcCc-hhhHhhhhccccceeeecCccccCchHHHh-ccccccEEecccccccchhhHHHHHhcCCCCCcc
Q 003270 554 IESLILMSCQSIGP-DGLYSLRSLQNLTMLDLSYTFLTNLEPVFE-SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQ 631 (835)
Q Consensus 554 L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 631 (835)
+..+++++|+.... ..++.+.....|+..+|++|.+...|+.|. ..+.+++|++.+|+ +.+...+ + ..++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~---Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-L---AAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-H---hhhHHhh
Confidence 44555556653321 113344444555556666666666555433 23456666666655 5544322 3 4455666
Q ss_pred EEeCCCcccchHHHHHHHhhCCCccEEEccCC
Q 003270 632 ELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663 (835)
Q Consensus 632 ~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~ 663 (835)
.|+++.|.+.. .+.-+..+.++-.|+..+|
T Consensus 104 ~lNl~~N~l~~--~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 104 SLNLRFNPLNA--EPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hcccccCcccc--chHHHHHHHhHHHhcCCCC
Confidence 66666665543 2233333445555555444
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.0025 Score=58.66 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=61.6
Q ss_pred CcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEE
Q 003270 193 LEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 268 (835)
Q Consensus 193 L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L 268 (835)
++.+|-++..|. +.+.+++.++.|.+.+|..+.|..+...-+-.++|+.|++++|+.+++.++.-+. .+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHH
Confidence 445555555554 5677888888999999988887777666666789999999999989988888777 77888877
Q ss_pred ecCCC
Q 003270 269 NSSYC 273 (835)
Q Consensus 269 ~l~~~ 273 (835)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77654
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.0021 Score=59.09 Aligned_cols=66 Identities=29% Similarity=0.380 Sum_probs=57.0
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT 587 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~ 587 (835)
+.+++.++.|.+.+|..+.|.++...-+-.++|+.|+|++|+.+++.|...+..+++|+.|.+.+=
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 345778888999999988888888777778999999999999999999999999999999888753
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0066 Score=58.45 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=16.7
Q ss_pred cccceeeecCccccCchH--HHhccccccEEeccccc
Q 003270 577 QNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACK 611 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~ 611 (835)
++|+.|++++|++..+.. .+..+.+|..|++.+|+
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 555555555555443211 23444555555555554
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.012 Score=52.19 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=14.3
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecc
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQ 608 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~ 608 (835)
.+|.++++++.+.+.+ .+..++. .|..+++|+.+.+.
T Consensus 52 ~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 52 NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred eeeecccccccccccc-cccccccccccccccccccccC
Confidence 3444444455555543 2222222 34445555555554
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.32 E-value=0.016 Score=34.40 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCCcceeecccccCCCchHHHHHH
Q 003270 796 CGMLETLDVRFCPKICSTSMGRLR 819 (835)
Q Consensus 796 ~~~L~~l~l~~c~~l~~~~~~~~~ 819 (835)
|++|++|+|++|+.++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888777765
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.25 E-value=0.015 Score=51.70 Aligned_cols=104 Identities=15% Similarity=0.330 Sum_probs=52.0
Q ss_pred hhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCC
Q 003270 548 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGS 626 (835)
Q Consensus 548 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 626 (835)
+.++++|+.+.+... +..++..+|.++++|+.+.+.++ +..++. .|.++++|+.+.+.+ . +....... +..
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~---F~~ 79 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNA---FSN 79 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTT---TTT
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccccc---ccc
Confidence 445555666665531 33344556777878888888774 666555 677787888888865 2 33332222 356
Q ss_pred CCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 627 LPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 627 ~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
+++|+.+++..+ +.. .-...|..+ .|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccE-EchhhhcCC-CceEEEECC
Confidence 778888888654 322 223456666 777777765
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.14 E-value=0.0021 Score=70.12 Aligned_cols=113 Identities=31% Similarity=0.346 Sum_probs=61.7
Q ss_pred CCCccEEeccCCCCcCchh---hHhhhhccc-cceeeecCccccC-----chHHHhcc-ccccEEecccccccchhhHHH
Q 003270 551 CPLIESLILMSCQSIGPDG---LYSLRSLQN-LTMLDLSYTFLTN-----LEPVFESC-LQLKVLKLQACKYLTNTSLES 620 (835)
Q Consensus 551 ~~~L~~L~l~~~~~~~~~~---~~~~~~l~~-L~~L~Ls~~~~~~-----l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~ 620 (835)
..++++|++.+|..+.... ...+...++ +++|++..|.+.+ +.+.+..+ ..++.++++.|+ +++.....
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~ 281 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRD 281 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHH
Confidence 3445555665555332211 123444455 6667777777663 22344444 566777777777 66665555
Q ss_pred HHh-cCCCCCccEEeCCCcccchHHHH---HHHhhCCCccEEEccCCC
Q 003270 621 LYK-KGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 621 l~~-~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~~~ 664 (835)
+.+ +..++.++.+.+++|.+.+.... ........+.++.+.++.
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 543 35566777777777776653322 223334445555555544
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.04 E-value=0.019 Score=32.45 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=13.5
Q ss_pred ccceeeecCccccCchHHHhc
Q 003270 578 NLTMLDLSYTFLTNLEPVFES 598 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~~~~~ 598 (835)
+|++|++++|+++.+|+.|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777766665443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.33 E-value=0.094 Score=27.42 Aligned_cols=15 Identities=60% Similarity=0.649 Sum_probs=6.9
Q ss_pred ccceeeecCccccCc
Q 003270 578 NLTMLDLSYTFLTNL 592 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l 592 (835)
+|++|++++|++..+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 456666666665544
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.68 E-value=0.26 Score=29.18 Aligned_cols=24 Identities=46% Similarity=1.023 Sum_probs=13.3
Q ss_pred CCCCCEEeCCCCCCCChHHHHHHH
Q 003270 236 CPQLESLDMSNCSCVSDESLREIA 259 (835)
Q Consensus 236 ~~~L~~L~L~~~~~l~~~~~~~~~ 259 (835)
|++|++|++++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345566666666555555555443
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.16 E-value=0.13 Score=29.09 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=6.1
Q ss_pred CcEEEcCCcccC
Q 003270 125 LEALTLGRGQLG 136 (835)
Q Consensus 125 L~~L~l~~~~i~ 136 (835)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555444
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.75 E-value=0.072 Score=58.32 Aligned_cols=171 Identities=26% Similarity=0.295 Sum_probs=98.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccC-CCcceEecccCCCCccchh---hhhhhcCCCccEEeccCCCCcC
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINC-PLLTSLDASFCSQLKDDCL---SATTTSCPLIESLILMSCQSIG 566 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~-~~L~~L~ls~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~ 566 (835)
+..++.|..++++.|.+. ..|...+-..+... ..+++|++..| .+++.+. ...+.....++.++++.|....
T Consensus 111 l~t~~~L~~L~l~~n~l~---~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLG---DEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE 186 (478)
T ss_pred hcccccHhHhhcccCCCc---cHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccch
Confidence 455667777777777764 11112222223332 45666777776 3443332 2234446677777777777542
Q ss_pred ch---hhHhhh----hccccceeeecCccccC-----chHHHhcccc-ccEEecccccccchhhHHHHHh-cCCC-CCcc
Q 003270 567 PD---GLYSLR----SLQNLTMLDLSYTFLTN-----LEPVFESCLQ-LKVLKLQACKYLTNTSLESLYK-KGSL-PALQ 631 (835)
Q Consensus 567 ~~---~~~~~~----~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~-~~~~-~~L~ 631 (835)
.. ....+. ...++++|.+++|.++. +...+...+. +.++++.+|. +.+.+...+.. +..+ ..++
T Consensus 187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~ 265 (478)
T KOG4308|consen 187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLR 265 (478)
T ss_pred hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhh
Confidence 11 012233 35677777777777763 2234555555 6667777777 66665555432 3334 5667
Q ss_pred EEeCCCcccchH---HHHHHHhhCCCccEEEccCCCCC
Q 003270 632 ELDLSYGTLCQS---AIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 632 ~L~l~~n~~~~~---~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
.++++.|.+++. .+.+.+..+.+++++.+.+|+..
T Consensus 266 ~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 266 VLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 888888877653 34566667778888888877643
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.37 E-value=0.26 Score=28.51 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=8.5
Q ss_pred CccceeecccCcCChhHH
Q 003270 772 PKLTSLFLQSCNIDEEGV 789 (835)
Q Consensus 772 ~~L~~L~l~~~~i~~~~l 789 (835)
++|++|+|++|.|+++++
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455555555555554443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.04 E-value=0.5 Score=27.26 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=12.1
Q ss_pred CCCCEEeCCCCCCCChHHHHHHH
Q 003270 237 PQLESLDMSNCSCVSDESLREIA 259 (835)
Q Consensus 237 ~~L~~L~L~~~~~l~~~~~~~~~ 259 (835)
++|++|+|++|. +++.++..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 556666666666 6666655543
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.66 E-value=2.3 Score=25.70 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=15.9
Q ss_pred CCCCEEeCCCCCCCChHHHHHHHH
Q 003270 237 PQLESLDMSNCSCVSDESLREIAL 260 (835)
Q Consensus 237 ~~L~~L~L~~~~~l~~~~~~~~~~ 260 (835)
++|++|+|++|. +++.+...++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHH
Confidence 467777777777 77777666654
No 83
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=82.10 E-value=0.32 Score=33.86 Aligned_cols=33 Identities=18% Similarity=0.484 Sum_probs=23.2
Q ss_pred hhhccccchhhhHHHHHHHHhhcCCCCceeecc
Q 003270 48 KIWKSGWILQMTYCIWQWRAASAHEDFWRCLNF 80 (835)
Q Consensus 48 ~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~~ 80 (835)
..+........+.|||+|+.+..+...|+++.+
T Consensus 14 ~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 14 SYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp TTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred hcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 334444456678899999999887888987654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.47 E-value=1.2 Score=26.27 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.3
Q ss_pred ccccceeeecCccccCchHH
Q 003270 576 LQNLTMLDLSYTFLTNLEPV 595 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~ 595 (835)
+++|+.|+|++|++..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677778888777777663
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.47 E-value=1.2 Score=26.27 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.3
Q ss_pred ccccceeeecCccccCchHH
Q 003270 576 LQNLTMLDLSYTFLTNLEPV 595 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~ 595 (835)
+++|+.|+|++|++..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677778888777777663
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.42 E-value=2 Score=25.93 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=12.4
Q ss_pred CccceeecccCcCChhHHHH
Q 003270 772 PKLTSLFLQSCNIDEEGVES 791 (835)
Q Consensus 772 ~~L~~L~l~~~~i~~~~l~~ 791 (835)
++|++|+|++|.|++++...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 45666677766666555543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.46 E-value=9 Score=41.73 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=46.7
Q ss_pred CCCCCcEEEecccchH------HHhhcCCCCcEEeecCCCCCCHHHHHHHHh--cCCCCCEEeCCCCCCCC-----hHHH
Q 003270 189 RCPQLEHLSLKRSNMA------QAVLNCPLLHLLDIASCHKLSDAAIRLAAT--SCPQLESLDMSNCSCVS-----DESL 255 (835)
Q Consensus 189 ~l~~L~~L~l~~~~i~------~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~--~~~~L~~L~L~~~~~l~-----~~~~ 255 (835)
+.+.+..+.+++|.+. ......|+|+.|+|++|....+.. ..+. +...|++|.+.+|+..+ .+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 4555556666665443 445567888888888873222111 1122 23567788888887322 2344
Q ss_pred HHHHHhCCCCcEEecC
Q 003270 256 REIALSCANLRILNSS 271 (835)
Q Consensus 256 ~~~~~~~~~L~~L~l~ 271 (835)
.++...+|+|..||=.
T Consensus 294 ~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 294 SAIRELFPKLLRLDGV 309 (585)
T ss_pred HHHHHhcchheeecCc
Confidence 4555567787777643
No 88
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=61.31 E-value=6.9 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=20.0
Q ss_pred hccccchhhhHHHHHHHHhhcCCCCcee
Q 003270 50 WKSGWILQMTYCIWQWRAASAHEDFWRC 77 (835)
Q Consensus 50 ~~~~~~~~~~~v~~~W~~~~~~~~~~~~ 77 (835)
+........+.||++|+.+...+..|..
T Consensus 13 l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 13 LPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 3333455667899999998887777753
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.06 E-value=4.4 Score=23.89 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=13.1
Q ss_pred cccceeeecCccccCchH
Q 003270 577 QNLTMLDLSYTFLTNLEP 594 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~ 594 (835)
++|++|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457778888887777665
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.24 E-value=6 Score=23.43 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=10.4
Q ss_pred cccceeeecCccccC
Q 003270 577 QNLTMLDLSYTFLTN 591 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~ 591 (835)
++|+.|++++|+|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567777777777664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.49 E-value=7.2 Score=42.43 Aligned_cols=13 Identities=31% Similarity=0.194 Sum_probs=6.6
Q ss_pred ccccccEEecccc
Q 003270 749 ACFNLCFLNLSNC 761 (835)
Q Consensus 749 ~~~~L~~L~l~~c 761 (835)
..|+|+.|+|+++
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3455555555554
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=42.27 E-value=1.7 Score=41.41 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=58.5
Q ss_pred HhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcc
Q 003270 94 CQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL 173 (835)
Q Consensus 94 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 173 (835)
+..+.+++.||++. +.... .-.-|+.++.+..|+++.|.+. ..|..+++...++.+++..|..+ ..|...+..+.+
T Consensus 38 i~~~kr~tvld~~s-~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSS-NRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhh-hHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 34667899999988 33332 3345777888899999988776 46777777778888888777653 456656655555
Q ss_pred cEEeccCccc
Q 003270 174 RRLEITKCRV 183 (835)
Q Consensus 174 ~~L~l~~~~~ 183 (835)
++++..++.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 5555555443
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=33.81 E-value=4.8 Score=38.49 Aligned_cols=85 Identities=12% Similarity=-0.094 Sum_probs=45.2
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~ 601 (835)
+..+...+.||++.|. +.. +..-++-++.|..|+++.|..--. +..+.....++.+++.+|..+..|.+++..+.
T Consensus 38 i~~~kr~tvld~~s~r-~vn--~~~n~s~~t~~~rl~~sknq~~~~--~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNR-LVN--LGKNFSILTRLVRLDLSKNQIKFL--PKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhccceeeeehhhhhH-HHh--hccchHHHHHHHHHhccHhhHhhC--hhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 3445666677777663 211 222233444555555555442111 44555555555566666666656666666666
Q ss_pred ccEEeccccc
Q 003270 602 LKVLKLQACK 611 (835)
Q Consensus 602 L~~L~l~~~~ 611 (835)
+++++..+++
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 6666666555
No 94
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=31.25 E-value=6.8 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=12.4
Q ss_pred HHHHHHHhh-cCCCCceeeccC
Q 003270 61 CIWQWRAAS-AHEDFWRCLNFE 81 (835)
Q Consensus 61 v~~~W~~~~-~~~~~~~~l~~~ 81 (835)
+...|.... .++|.|.+|.|+
T Consensus 22 ~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 22 VLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp CCTT--TT--S-CCCSTTEEE-
T ss_pred ccccCCCcCCCCCeeeccEEeC
Confidence 355798653 789999999874
Done!