Query 003270
Match_columns 835
No_of_seqs 374 out of 4204
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.9E-51 3.4E-55 478.5 22.8 634 61-808 29-715 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.2E-49 1.8E-53 463.8 21.2 655 62-813 39-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-41 3.7E-46 398.6 25.1 572 98-814 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.2E-40 7.5E-45 387.5 28.9 563 123-831 25-617 (680)
5 3t6q_A CD180 antigen; protein- 100.0 7.3E-39 2.5E-43 369.5 28.2 524 99-819 34-569 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-39 5E-44 375.3 19.1 526 98-823 32-571 (606)
7 3t6q_A CD180 antigen; protein- 100.0 9.8E-39 3.4E-43 368.4 24.1 502 74-666 34-560 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-36 8.1E-41 348.5 17.5 500 74-667 33-559 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-36 4.1E-41 362.2 13.3 284 98-432 24-325 (844)
10 2z81_A CD282 antigen, TOLL-lik 100.0 5.8E-35 2E-39 332.8 22.3 233 123-403 26-261 (549)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-35 9E-40 350.8 15.6 506 72-667 23-561 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 1.6E-34 5.3E-39 331.1 21.3 486 98-666 28-531 (570)
13 4ecn_A Leucine-rich repeat pro 100.0 5.6E-35 1.9E-39 340.4 17.8 223 76-320 315-630 (876)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-34 7.7E-39 327.9 18.5 457 98-642 26-511 (549)
15 4eco_A Uncharacterized protein 100.0 2.1E-34 7.1E-39 331.3 18.1 234 64-322 59-366 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 1.6E-34 5.5E-39 331.0 13.8 478 74-642 29-532 (570)
17 4g8a_A TOLL-like receptor 4; l 100.0 6.9E-33 2.4E-37 322.3 16.5 531 99-820 53-590 (635)
18 4eco_A Uncharacterized protein 100.0 3.8E-32 1.3E-36 312.5 18.3 449 123-666 81-632 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 6E-32 2E-36 305.4 17.8 463 101-666 3-481 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 6.5E-32 2.2E-36 314.6 17.2 194 123-322 323-608 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-31 5.5E-36 301.9 18.4 65 751-818 421-489 (520)
22 2p1m_B Transport inhibitor res 100.0 2.1E-30 7E-35 298.5 25.4 492 46-664 17-542 (594)
23 3ogk_B Coronatine-insensitive 100.0 1.5E-30 5.3E-35 299.3 20.6 244 54-320 33-304 (592)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-30 6.1E-35 295.6 13.5 428 123-642 52-511 (562)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.3E-30 3.2E-34 289.7 12.9 464 121-667 29-511 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-28 4.6E-33 286.1 18.6 499 75-667 54-581 (635)
27 3ogk_B Coronatine-insensitive 100.0 8.1E-28 2.8E-32 276.6 22.6 78 750-828 462-543 (592)
28 2p1m_B Transport inhibitor res 100.0 5E-27 1.7E-31 270.2 26.5 436 205-826 60-534 (594)
29 3v47_A TOLL-like receptor 5B a 99.9 1.6E-27 5.4E-32 264.5 19.1 134 495-642 275-409 (455)
30 1jl5_A Outer protein YOPM; leu 99.9 3.8E-28 1.3E-32 266.4 12.9 264 98-432 11-288 (454)
31 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-27 2E-31 257.3 19.3 65 462-536 285-349 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 3E-27 1E-31 262.3 16.6 361 98-616 30-410 (455)
33 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-26 7.9E-31 255.7 22.0 207 191-432 3-238 (461)
34 1o6v_A Internalin A; bacterial 99.9 1.3E-25 4.4E-30 249.1 25.6 107 522-642 283-389 (466)
35 1o6v_A Internalin A; bacterial 99.9 7.7E-26 2.6E-30 250.9 22.7 148 491-664 239-386 (466)
36 1z7x_W Ribonuclease inhibitor; 99.9 1.3E-25 4.5E-30 249.6 24.1 158 98-258 3-190 (461)
37 1jl5_A Outer protein YOPM; leu 99.9 1.1E-25 3.8E-30 246.9 13.5 397 77-591 15-430 (454)
38 3bz5_A Internalin-J, INLJ; leu 99.9 7.1E-25 2.4E-29 240.7 17.3 323 97-536 41-365 (457)
39 4fmz_A Internalin; leucine ric 99.9 1.2E-23 3.9E-28 224.2 23.6 84 573-664 261-344 (347)
40 3o6n_A APL1; leucine-rich repe 99.9 3.1E-24 1.1E-28 232.4 18.7 122 522-654 244-365 (390)
41 4fmz_A Internalin; leucine ric 99.9 2.6E-23 8.8E-28 221.6 24.0 190 168-432 41-232 (347)
42 3o6n_A APL1; leucine-rich repe 99.9 1.8E-23 6.3E-28 226.3 20.5 116 491-621 244-359 (390)
43 2id5_A Lingo-1, leucine rich r 99.9 7.2E-24 2.5E-28 236.3 14.4 289 98-432 32-331 (477)
44 2id5_A Lingo-1, leucine rich r 99.9 1.2E-23 4.1E-28 234.5 15.3 161 491-666 172-333 (477)
45 3oja_B Anopheles plasmodium-re 99.9 4.8E-23 1.7E-27 235.5 18.7 118 522-650 250-367 (597)
46 2ast_B S-phase kinase-associat 99.9 3.3E-23 1.1E-27 219.6 13.4 273 47-328 21-312 (336)
47 3oja_B Anopheles plasmodium-re 99.9 4.4E-22 1.5E-26 227.5 20.9 314 209-621 49-365 (597)
48 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-24 1.8E-28 222.2 3.7 247 62-327 24-286 (313)
49 2ft3_A Biglycan; proteoglycan, 99.9 3.4E-21 1.2E-25 203.4 17.2 292 264-664 34-331 (332)
50 1xku_A Decorin; proteoglycan, 99.9 8E-21 2.7E-25 200.4 18.2 292 264-663 32-329 (330)
51 1xku_A Decorin; proteoglycan, 99.8 4.2E-20 1.4E-24 194.9 17.2 267 123-431 52-329 (330)
52 4fcg_A Uncharacterized protein 99.8 2.6E-21 8.9E-26 203.0 7.5 250 62-337 47-305 (328)
53 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-21 1.1E-25 201.1 7.5 167 123-294 50-231 (313)
54 2ft3_A Biglycan; proteoglycan, 99.8 6.4E-20 2.2E-24 193.6 13.5 267 123-432 54-331 (332)
55 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-20 9.6E-25 194.6 7.4 263 100-408 12-277 (317)
56 2z80_A TOLL-like receptor 2, v 99.8 5.7E-19 1.9E-23 188.1 15.7 163 491-664 120-288 (353)
57 2z80_A TOLL-like receptor 2, v 99.8 3.7E-19 1.3E-23 189.5 12.3 255 124-432 53-312 (353)
58 2ca6_A RAN GTPase-activating p 99.8 1.9E-18 6.6E-23 186.4 17.7 261 516-827 22-334 (386)
59 2z66_A Variable lymphocyte rec 99.8 1.4E-19 4.8E-24 188.7 8.4 58 770-828 221-279 (306)
60 4fcg_A Uncharacterized protein 99.8 1.7E-19 5.9E-24 189.1 8.8 223 121-376 79-315 (328)
61 2ast_B S-phase kinase-associat 99.8 4.9E-18 1.7E-22 179.8 19.3 255 100-414 49-313 (336)
62 3o53_A Protein LRIM1, AGAP0063 99.8 3E-19 1E-23 186.8 9.0 247 358-667 30-276 (317)
63 2z66_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 189.3 4.3 242 72-323 6-262 (306)
64 3zyi_A Leucine-rich repeat-con 99.8 2.8E-18 9.6E-23 189.2 13.0 159 491-665 143-302 (452)
65 3zyj_A Leucine-rich repeat-con 99.8 2.5E-18 8.5E-23 188.9 12.3 159 491-665 132-291 (440)
66 1ozn_A Reticulon 4 receptor; N 99.7 4.4E-18 1.5E-22 175.3 12.9 135 522-664 101-236 (285)
67 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-17 4.3E-22 188.3 16.8 235 495-808 61-295 (622)
68 2ca6_A RAN GTPase-activating p 99.7 1.2E-17 4E-22 180.3 15.6 232 90-325 24-319 (386)
69 1wwl_A Monocyte differentiatio 99.7 1.4E-18 4.7E-23 181.3 7.3 214 99-322 44-287 (312)
70 3goz_A Leucine-rich repeat-con 99.7 1.6E-17 5.4E-22 177.3 15.3 260 104-411 4-301 (362)
71 3zyj_A Leucine-rich repeat-con 99.7 2.6E-18 9E-23 188.7 9.5 236 74-321 44-291 (440)
72 3oja_A Leucine-rich immune mol 99.7 3.5E-18 1.2E-22 189.2 10.5 191 122-321 33-226 (487)
73 3zyi_A Leucine-rich repeat-con 99.7 2.7E-18 9.4E-23 189.3 9.5 235 74-320 55-301 (452)
74 3oja_A Leucine-rich immune mol 99.7 5.7E-18 1.9E-22 187.5 11.8 240 359-661 31-270 (487)
75 1ozn_A Reticulon 4 receptor; N 99.7 3.9E-18 1.3E-22 175.7 8.7 204 98-323 32-239 (285)
76 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-16 4.7E-21 179.9 20.3 127 494-651 180-306 (622)
77 1wwl_A Monocyte differentiatio 99.7 6.6E-18 2.3E-22 176.1 6.2 197 119-323 91-310 (312)
78 2z62_A TOLL-like receptor 4, v 99.7 3.5E-17 1.2E-21 167.6 8.4 205 99-323 29-238 (276)
79 3goz_A Leucine-rich repeat-con 99.7 1.7E-16 5.7E-21 169.3 13.9 262 127-432 2-295 (362)
80 1p9a_G Platelet glycoprotein I 99.7 7.5E-17 2.6E-21 165.6 8.4 153 491-663 6-158 (290)
81 2z62_A TOLL-like receptor 4, v 99.6 8.5E-16 2.9E-20 157.3 13.6 110 549-664 121-235 (276)
82 4glp_A Monocyte differentiatio 99.6 6.5E-16 2.2E-20 160.9 11.3 203 99-323 65-286 (310)
83 2xwt_C Thyrotropin receptor; s 99.6 4.3E-16 1.5E-20 155.6 7.8 156 491-664 76-237 (239)
84 4glp_A Monocyte differentiatio 99.6 3E-15 1E-19 155.9 13.5 227 122-376 63-308 (310)
85 1h6u_A Internalin H; cell adhe 99.6 2.8E-15 9.5E-20 155.6 12.9 187 98-321 41-229 (308)
86 1h6u_A Internalin H; cell adhe 99.6 1.2E-14 4E-19 150.9 15.8 125 523-664 104-228 (308)
87 2o6q_A Variable lymphocyte rec 99.6 4.1E-15 1.4E-19 151.4 12.2 158 491-664 57-216 (270)
88 2o6q_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 148.5 14.5 137 491-641 81-218 (270)
89 1p9a_G Platelet glycoprotein I 99.6 1.2E-14 4E-19 149.2 14.9 61 358-432 6-66 (290)
90 3rfs_A Internalin B, repeat mo 99.6 1.1E-15 3.7E-20 155.8 6.6 203 97-332 40-245 (272)
91 2xwt_C Thyrotropin receptor; s 99.6 8.9E-16 3.1E-20 153.3 5.3 190 124-340 32-236 (239)
92 3rfs_A Internalin B, repeat mo 99.6 2.2E-15 7.6E-20 153.5 8.3 176 119-319 37-215 (272)
93 3m19_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 142.8 9.2 156 495-665 35-191 (251)
94 1h6t_A Internalin B; cell adhe 99.5 1.4E-13 4.7E-18 141.4 11.4 167 462-664 45-211 (291)
95 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 139.1 9.4 151 496-664 15-166 (251)
96 1h6t_A Internalin B; cell adhe 99.4 2.8E-13 9.7E-18 139.1 11.7 169 121-323 44-214 (291)
97 4ezg_A Putative uncharacterize 99.4 1.6E-13 5.6E-18 132.1 8.1 152 491-664 40-192 (197)
98 4ay9_X Follicle-stimulating ho 99.4 8.2E-14 2.8E-18 147.6 6.3 161 495-669 30-193 (350)
99 3cvr_A Invasion plasmid antige 99.4 1.6E-13 5.3E-18 152.9 6.6 188 98-307 59-252 (571)
100 3cvr_A Invasion plasmid antige 99.4 1.5E-13 5.1E-18 153.0 6.3 186 123-333 59-254 (571)
101 4ay9_X Follicle-stimulating ho 99.4 1.6E-13 5.4E-18 145.4 5.9 217 123-370 30-254 (350)
102 1m9s_A Internalin B; cell inva 99.4 8.1E-13 2.8E-17 149.0 12.0 167 121-323 41-211 (605)
103 2v70_A SLIT-2, SLIT homolog 2 99.4 2.9E-13 1E-17 132.6 7.2 150 499-665 15-165 (220)
104 4ezg_A Putative uncharacterize 99.4 1.8E-12 6.2E-17 124.7 11.8 109 491-611 84-192 (197)
105 1m9s_A Internalin B; cell inva 99.4 1E-12 3.6E-17 148.1 11.5 149 491-665 61-209 (605)
106 2v9t_B SLIT homolog 2 protein 99.3 6.8E-13 2.3E-17 129.9 6.8 140 516-665 24-164 (220)
107 2je0_A Acidic leucine-rich nuc 99.3 1.7E-12 5.9E-17 118.6 8.8 130 525-662 16-149 (149)
108 3sb4_A Hypothetical leucine ri 99.3 3.6E-13 1.2E-17 141.3 4.8 126 525-660 201-328 (329)
109 2o6s_A Variable lymphocyte rec 99.3 8.1E-14 2.8E-18 135.7 -0.5 181 72-284 6-189 (208)
110 2ell_A Acidic leucine-rich nuc 99.3 1.7E-12 5.8E-17 121.4 7.3 132 524-664 22-158 (168)
111 2o6s_A Variable lymphocyte rec 99.3 2.1E-12 7.2E-17 125.6 6.6 148 495-664 28-176 (208)
112 1xeu_A Internalin C; cellular 99.3 2.4E-12 8.4E-17 129.8 7.1 147 491-664 37-183 (263)
113 2xot_A Amphoterin-induced prot 99.3 4.5E-12 1.5E-16 134.7 8.7 158 496-665 40-201 (361)
114 1dce_A Protein (RAB geranylger 99.3 2.2E-14 7.4E-19 160.9 -9.7 188 120-326 346-550 (567)
115 2ell_A Acidic leucine-rich nuc 99.3 7E-12 2.4E-16 117.2 9.0 136 495-642 24-161 (168)
116 2je0_A Acidic leucine-rich nuc 99.3 1E-11 3.5E-16 113.4 9.8 132 494-637 16-149 (149)
117 3e6j_A Variable lymphocyte rec 99.3 1.3E-11 4.6E-16 121.6 10.7 132 495-641 40-172 (229)
118 3e6j_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 125.4 6.9 139 516-665 32-171 (229)
119 1dce_A Protein (RAB geranylger 99.3 2E-13 7E-18 152.9 -3.0 123 527-660 442-567 (567)
120 3sb4_A Hypothetical leucine ri 99.2 1.5E-11 5.1E-16 128.9 10.5 37 98-136 25-62 (329)
121 1xeu_A Internalin C; cellular 99.2 1E-11 3.6E-16 125.2 8.4 123 118-248 36-161 (263)
122 2v9t_B SLIT homolog 2 protein 99.2 2.5E-11 8.6E-16 118.7 9.7 134 495-642 32-166 (220)
123 1a9n_A U2A', U2A'; complex (nu 99.2 1.6E-11 5.6E-16 115.6 8.1 138 491-642 15-154 (176)
124 1ds9_A Outer arm dynein; leuci 99.2 3E-12 1E-16 123.3 2.7 151 491-659 14-180 (198)
125 2v70_A SLIT-2, SLIT homolog 2 99.2 4.6E-11 1.6E-15 116.8 10.5 134 495-642 32-167 (220)
126 2xot_A Amphoterin-induced prot 99.2 2.1E-11 7.3E-16 129.5 7.8 144 125-273 41-199 (361)
127 3un9_A NLR family member X1; l 99.2 3.3E-11 1.1E-15 127.6 8.6 137 525-664 100-250 (372)
128 4fs7_A Uncharacterized protein 99.2 7.7E-11 2.6E-15 126.9 11.3 144 491-658 249-393 (394)
129 1a9n_A U2A', U2A'; complex (nu 99.1 4.3E-11 1.5E-15 112.7 6.6 134 521-665 14-152 (176)
130 3un9_A NLR family member X1; l 99.1 9.4E-11 3.2E-15 124.1 9.2 168 211-427 101-274 (372)
131 4fs7_A Uncharacterized protein 99.1 1.9E-10 6.5E-15 123.8 11.8 61 117-179 65-125 (394)
132 1w8a_A SLIT protein; signaling 99.1 6.8E-11 2.3E-15 112.9 7.0 118 516-641 21-139 (192)
133 1w8a_A SLIT protein; signaling 99.1 5E-11 1.7E-15 113.8 4.4 128 529-666 11-139 (192)
134 1ds9_A Outer arm dynein; leuci 99.1 8.5E-12 2.9E-16 120.1 -1.4 129 118-269 43-180 (198)
135 2wfh_A SLIT homolog 2 protein 99.1 2.2E-10 7.6E-15 109.2 8.2 115 516-640 23-138 (193)
136 2wfh_A SLIT homolog 2 protein 99.0 2.1E-10 7E-15 109.5 6.3 125 529-665 13-138 (193)
137 4fdw_A Leucine rich hypothetic 99.0 2.1E-09 7.2E-14 114.9 14.1 61 357-430 175-235 (401)
138 4b8c_D Glucose-repressible alc 99.0 3.1E-10 1.1E-14 131.4 8.0 112 491-616 220-331 (727)
139 3e4g_A ATP synthase subunit S, 99.0 4E-10 1.4E-14 102.9 6.7 103 706-826 62-170 (176)
140 4b8c_D Glucose-repressible alc 99.0 1.6E-10 5.4E-15 133.9 4.3 137 517-664 215-352 (727)
141 2o6r_A Variable lymphocyte rec 98.9 5.6E-10 1.9E-14 105.1 5.8 129 497-642 9-138 (177)
142 4fdw_A Leucine rich hypothetic 98.9 6.2E-09 2.1E-13 111.2 14.3 151 491-662 176-332 (401)
143 2o6r_A Variable lymphocyte rec 98.9 1.6E-09 5.3E-14 102.0 8.4 127 528-665 9-136 (177)
144 4gt6_A Cell surface protein; l 98.9 2.5E-08 8.5E-13 107.2 18.4 127 521-662 260-387 (394)
145 4gt6_A Cell surface protein; l 98.8 4.2E-08 1.4E-12 105.4 12.9 11 418-428 134-144 (394)
146 1io0_A Tropomodulin; LRR prote 98.7 5.1E-08 1.8E-12 91.9 11.7 117 547-664 31-162 (185)
147 3e4g_A ATP synthase subunit S, 98.7 1.6E-08 5.4E-13 92.3 7.4 97 518-616 53-155 (176)
148 3g39_A Variable lymphocyte rec 98.7 1.5E-08 5.1E-13 94.3 6.4 104 528-641 11-115 (170)
149 2ra8_A Uncharacterized protein 98.7 3.6E-08 1.2E-12 103.2 10.0 207 88-320 95-341 (362)
150 2r9u_A Variable lymphocyte rec 98.7 2E-08 6.9E-13 93.7 6.6 85 552-641 33-118 (174)
151 2ra8_A Uncharacterized protein 98.7 2.7E-08 9.3E-13 104.1 7.9 139 519-664 165-318 (362)
152 2r9u_A Variable lymphocyte rec 98.6 4.8E-08 1.6E-12 91.1 7.2 103 498-614 15-118 (174)
153 3g39_A Variable lymphocyte rec 98.6 5.1E-08 1.7E-12 90.7 7.2 103 498-614 12-115 (170)
154 1io0_A Tropomodulin; LRR prote 98.6 5.9E-07 2E-11 84.6 13.8 50 111-160 24-78 (185)
155 4h09_A Hypothetical leucine ri 98.5 9.1E-07 3.1E-11 94.5 13.1 129 522-662 213-342 (379)
156 4h09_A Hypothetical leucine ri 98.4 2.9E-06 9.9E-11 90.5 16.1 129 522-662 190-319 (379)
157 2ifg_A High affinity nerve gro 98.3 6.2E-07 2.1E-11 94.5 6.9 103 499-614 12-116 (347)
158 2ifg_A High affinity nerve gro 98.3 3.1E-07 1.1E-11 96.8 4.5 92 111-204 21-116 (347)
159 1pgv_A TMD-1, tropomodulin TMD 98.0 6.1E-05 2.1E-09 70.0 13.2 120 544-664 33-168 (197)
160 3rw6_A Nuclear RNA export fact 97.8 4.3E-05 1.5E-09 75.4 8.1 83 574-660 167-258 (267)
161 3rw6_A Nuclear RNA export fact 97.7 3.3E-05 1.1E-09 76.2 5.0 41 144-184 167-209 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 0.00088 3E-08 62.2 14.3 47 114-160 32-83 (197)
163 3rfe_A Platelet glycoprotein I 95.8 0.0041 1.4E-07 53.9 2.8 56 763-820 19-78 (130)
164 1fs1_A SKP2 F-BOX, cyclin A/CD 90.2 0.11 3.7E-06 36.4 1.6 34 46-79 20-53 (53)
165 3rfe_A Platelet glycoprotein I 89.6 0.37 1.3E-05 41.4 4.9 54 127-182 12-66 (130)
166 3l2o_B F-box only protein 4; s 36.9 4.9 0.00017 39.4 -1.2 41 42-82 12-52 (312)
167 2lz0_A Uncharacterized protein 36.3 17 0.00057 29.1 2.1 14 522-535 16-29 (100)
168 2lz0_A Uncharacterized protein 29.0 32 0.0011 27.4 2.6 36 391-431 18-53 (100)
169 2w7z_A EFSQNR, pentapeptide re 20.3 4.6E+02 0.016 23.8 9.4 10 423-432 92-101 (214)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.9e-51 Score=478.49 Aligned_cols=634 Identities=18% Similarity=0.178 Sum_probs=355.9
Q ss_pred HHHHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhH---HHHHHhhCCcCcEEEcCCcccCh
Q 003270 61 CIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL---VMKAVSLLRNLEALTLGRGQLGD 137 (835)
Q Consensus 61 v~~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~i~~ 137 (835)
+...|. ...++|.|++|.|+ . .+++.|+++++ .+.+. +++++..+++|+.++++.+.+..
T Consensus 29 ~l~~W~-~~~~~C~w~gv~C~-~--------------~~v~~L~L~~~-~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~ 91 (768)
T 3rgz_A 29 LLPDWS-SNKNPCTFDGVTCR-D--------------DKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLESLFLSNSHING 91 (768)
T ss_dssp SSTTCC-TTSCGGGSTTEEEE-T--------------TEEEEEECTTS-CCCEEHHHHHHHTTTCTTCCEEECTTSCEEE
T ss_pred cccCCC-CCCCCcCCcceEEC-C--------------CcEEEEECCCC-CcCCccCccChhHhccCcccccCCcCCCcCC
Confidence 355796 45678999999996 2 27999999994 55554 77889999999999999887753
Q ss_pred hhHHhhcCCCCCCEEEecCCCCCccccc--ccccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchHHHhhcC
Q 003270 138 AFFHALADCSMLKSLNVNDATLGNGVQE--IPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMAQAVLNC 210 (835)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~~~~~~~ 210 (835)
+|..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+... ..++++|++|++++|.+.
T Consensus 92 -l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~------ 164 (768)
T 3rgz_A 92 -SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS------ 164 (768)
T ss_dssp -CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE------
T ss_pred -CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC------
Confidence 567899999999999999999988888 888899999999988876421 124555555555555443
Q ss_pred CCCcEEeecCCCCCCHHHHHHH---HhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCC
Q 003270 211 PLLHLLDIASCHKLSDAAIRLA---ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLP 284 (835)
Q Consensus 211 ~~L~~L~l~~~~~l~~~~l~~~---~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~ 284 (835)
.. .+.. +.++++|++|++++|. +.+..+. ..+++|++|++++|. .+|. ++.++
T Consensus 165 ---------------~~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 165 ---------------GA-NVVGWVLSDGCGELKHLAISGNK-ISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp ---------------EE-THHHHHHTTCCTTCCEEECCSSE-EESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred ---------------Cc-CChhhhhhccCCCCCEEECCCCc-ccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 11 1111 3444555555555544 3221111 145555555555554 2233 55666
Q ss_pred CCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee---eec-c
Q 003270 285 MLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVS-N 360 (835)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~---~l~-~ 360 (835)
+|++|++++| .+.+..+..++.+++|++|++++|.+.+.+|.. .+++|+.+++.++.+++. .+. .
T Consensus 224 ~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----------~l~~L~~L~L~~n~l~~~ip~~~~~~ 292 (768)
T 3rgz_A 224 ALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----------PLKSLQYLSLAENKFTGEIPDFLSGA 292 (768)
T ss_dssp SCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----------CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred CCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCcc----------ccCCCCEEECcCCccCCccCHHHHhh
Confidence 6666666665 566666666777777777777777665554432 222333333333333311 222 2
Q ss_pred CCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhh-ccCCCCCCCccEEEecCCCCCc-ccc
Q 003270 361 CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV-FSDGGGCPMLKSLVLDNCEGLT-VVR 438 (835)
Q Consensus 361 ~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~-~~~ 438 (835)
|++|++|++++|.+++..+..+. .+++|++|++++ +.+++..|.. + ..+++|++|++++|. ++ .++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~L~~-n~l~~~ip~~~l---~~l~~L~~L~Ls~n~-l~~~~p 360 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFG-------SCSLLESLALSS-NNFSGELPMDTL---LKMRGLKVLDLSFNE-FSGELP 360 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGG-------GCTTCCEEECCS-SEEEEECCHHHH---TTCTTCCEEECCSSE-EEECCC
T ss_pred cCcCCEEECcCCcCCCccchHHh-------cCCCccEEECCC-CcccCcCCHHHH---hcCCCCCEEeCcCCc-cCcccc
Confidence 47777777777777765443332 346777777777 4666544433 4 567777777777765 22 111
Q ss_pred ccCCcceEEeccCCcccccccccC-CCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcc
Q 003270 439 FCSTSLVSLSLVGCRAITALELKC-PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 517 (835)
Q Consensus 439 ~~~~~l~~l~l~~~~~l~~l~~~~-~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~ 517 (835)
.. ...+ ++|+.++++++.-.+ .+|..+ ....+++|+.+++++|.++ +.
T Consensus 361 ~~------------------l~~l~~~L~~L~Ls~N~l~~---~~~~~~---~~~~~~~L~~L~L~~n~l~-------~~ 409 (768)
T 3rgz_A 361 ES------------------LTNLSASLLTLDLSSNNFSG---PILPNL---CQNPKNTLQELYLQNNGFT-------GK 409 (768)
T ss_dssp TT------------------HHHHTTTCSEEECCSSEEEE---ECCTTT---TCSTTCCCCEEECCSSEEE-------EE
T ss_pred HH------------------HHhhhcCCcEEEccCCCcCC---CcChhh---hhcccCCccEEECCCCccc-------cc
Confidence 10 0011 245555555442211 112211 0112455666666666664 55
Q ss_pred cccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHH
Q 003270 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVF 596 (835)
Q Consensus 518 l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~ 596 (835)
+|..+.++++|++|++++| .+. +.++..+..+++|+.|++++|...+.. +..+..+++|++|++++|++++ +|..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N-~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFN-YLS-GTIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp CCGGGGGCTTCCEEECCSS-EEE-SCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCHHHhcCCCCCEEECcCC-ccc-CcccHHHhcCCCCCEEECCCCcccCcC-CHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 5666666666666666666 232 234555666666666666666644332 5556666666666666666664 55566
Q ss_pred hccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCcccccccccc
Q 003270 597 ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 676 (835)
Q Consensus 597 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 676 (835)
..+++|++|++++|+ +++..+..+ +.+++|++|++++|++++ .+|..+..+++|++|++++|+....++...
T Consensus 487 ~~l~~L~~L~L~~N~-l~~~~p~~~---~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~--- 558 (768)
T 3rgz_A 487 SNCTNLNWISLSNNR-LTGEIPKWI---GRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAM--- 558 (768)
T ss_dssp GGCTTCCEEECCSSC-CCSCCCGGG---GGCTTCCEEECCSSCCEE-ECCGGGGGCTTCCEEECCSSEEESBCCGGG---
T ss_pred hcCCCCCEEEccCCc-cCCcCChHH---hcCCCCCEEECCCCcccC-cCCHHHcCCCCCCEEECCCCccCCcCChHH---
Confidence 666666666666666 555555443 456666666666666665 455556666666666666665332322111
Q ss_pred CCCCCCccccccccC-----------CCC---C------cccccC---ccccccccccccCCCCccccccCcccccCccc
Q 003270 677 QPFESPSVYNSCGIF-----------PHE---N------IHESID---QPNRLLQNLNCVGCPNIRKVFIPPQARCFHLS 733 (835)
Q Consensus 677 ~~~~l~~l~~~~~~~-----------~~~---~------~~~~~~---~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~ 733 (835)
.....+....... ... . ...... .....++.+++.. ..+.....+.++.+++|+
T Consensus 559 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 559 --FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS-RVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp --GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS-CEEEEECCCSCSSSBCCC
T ss_pred --hcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc-ceecccCchhhhcccccc
Confidence 1100000000000 000 0 000000 0001111111111 011111122355666677
Q ss_pred eEeccCCC---CccccccccccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHHHhcCCCcceeecccc
Q 003270 734 SLNLSLSA---NLKEVDVACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFC 807 (835)
Q Consensus 734 ~L~l~~~~---~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c 807 (835)
.|+++++. .++.....+++|+.|++++|..-..+|. .+++|++|++++|+++ +.+|..+..+++|++||+++|
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEECCSS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECcCC
Confidence 77776543 3333344566677777777664445553 4566777777777765 456666667777777777766
Q ss_pred c
Q 003270 808 P 808 (835)
Q Consensus 808 ~ 808 (835)
+
T Consensus 715 ~ 715 (768)
T 3rgz_A 715 N 715 (768)
T ss_dssp E
T ss_pred c
Confidence 5
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-49 Score=463.79 Aligned_cols=655 Identities=19% Similarity=0.208 Sum_probs=453.7
Q ss_pred HHHHHHhhcCCCCceeeccCCCCCCHH--HHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhh
Q 003270 62 IWQWRAASAHEDFWRCLNFENRKISVE--QFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF 139 (835)
Q Consensus 62 ~~~W~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 139 (835)
|-+|..+..+....+.++++....... .+...+..+++++.++++.+ .+.. .+..+..+++|++|++++|.+.+.+
T Consensus 39 ~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~-~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (768)
T 3rgz_A 39 PCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HING-SVSGFKCSASLTSLDLSRNSLSGPV 116 (768)
T ss_dssp GGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTS-CEEE-CCCCCCCCTTCCEEECCSSEEEEEG
T ss_pred CcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCC-CcCC-CchhhccCCCCCEEECCCCcCCCcC
Confidence 558988766555677888887666542 35666778888999999884 3432 3457899999999999999999988
Q ss_pred HH--hhcCCCCCCEEEecCCCCCccccccc-ccCCcccEEeccCcccccc-------ccCCCCCcEEEecccchHH--Hh
Q 003270 140 FH--ALADCSMLKSLNVNDATLGNGVQEIP-INHDQLRRLEITKCRVMRV-------SIRCPQLEHLSLKRSNMAQ--AV 207 (835)
Q Consensus 140 ~~--~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-------~~~l~~L~~L~l~~~~i~~--~~ 207 (835)
|. .++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.+... ..++++|++|++++|.+.. .+
T Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 196 (768)
T 3rgz_A 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196 (768)
T ss_dssp GGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC
T ss_pred CChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc
Confidence 88 99999999999999999988777655 7899999999999998643 3578999999999998862 34
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCC
Q 003270 208 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLP 284 (835)
Q Consensus 208 ~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~ 284 (835)
..+++|++|++++|. +.. .++. ++++++|++|++++|. +++..+..+. .+++|++|++++|. .+|.. .++
T Consensus 197 ~~l~~L~~L~Ls~n~-l~~-~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~--~l~ 269 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNN-FST-GIPF-LGDCSALQHLDISGNK-LSGDFSRAIS-TCTELKLLNISSNQFVGPIPPL--PLK 269 (768)
T ss_dssp TTCTTCCEEECCSSC-CCS-CCCB-CTTCCSCCEEECCSSC-CCSCHHHHTT-TCSSCCEEECCSSCCEESCCCC--CCT
T ss_pred ccCCcCCEEECcCCc-CCC-CCcc-cccCCCCCEEECcCCc-CCCcccHHHh-cCCCCCEEECCCCcccCccCcc--ccC
Confidence 789999999999984 542 3344 7899999999999999 8877777776 89999999999987 23332 788
Q ss_pred CCcEEecCCCCCCChhhHHHhhh-ccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccc-ee---eec
Q 003270 285 MLTVLQLHSCEGITSASMAAISH-SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS-SI---MVS 359 (835)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~-~~---~l~ 359 (835)
+|++|++++| .+.+..+..+.. +++|++|++++|.+.+.+|..+.. +++|+.+++.++.++ .+ .+.
T Consensus 270 ~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 270 SLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS--------CSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp TCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG--------CTTCCEEECCSSEEEEECCHHHHT
T ss_pred CCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc--------CCCccEEECCCCcccCcCCHHHHh
Confidence 8888888887 666666666655 488888888888876666543322 222233333333333 11 144
Q ss_pred cCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccc
Q 003270 360 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 439 (835)
Q Consensus 360 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 439 (835)
.+++|++|++++|.+++..+.....+ .++|++|++++ +.+++..+..+.. ..+++|++|++++|.
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l------~~~L~~L~Ls~-N~l~~~~~~~~~~-~~~~~L~~L~L~~n~------- 405 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNL------SASLLTLDLSS-NNFSGPILPNLCQ-NPKNTLQELYLQNNG------- 405 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHH------TTTCSEEECCS-SEEEEECCTTTTC-STTCCCCEEECCSSE-------
T ss_pred cCCCCCEEeCcCCccCccccHHHHhh------hcCCcEEEccC-CCcCCCcChhhhh-cccCCccEEECCCCc-------
Confidence 45555555555555544332222111 02455555555 3444433332210 113344444444442
Q ss_pred cCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc
Q 003270 440 CSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS 519 (835)
Q Consensus 440 ~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~ 519 (835)
-. +.+|.. +.++++|+.+++++|.++ +.+|
T Consensus 406 -----------------------------------l~---~~~p~~-----l~~l~~L~~L~Ls~N~l~-------~~~p 435 (768)
T 3rgz_A 406 -----------------------------------FT---GKIPPT-----LSNCSELVSLHLSFNYLS-------GTIP 435 (768)
T ss_dssp -----------------------------------EE---EECCGG-----GGGCTTCCEEECCSSEEE-------SCCC
T ss_pred -----------------------------------cc---cccCHH-----HhcCCCCCEEECcCCccc-------Cccc
Confidence 11 123333 677888999999999886 7888
Q ss_pred cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhc
Q 003270 520 DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFES 598 (835)
Q Consensus 520 ~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~ 598 (835)
..+..+++|++|++++|. +. +.++..+..+++|++|++++|...+.. +..+..+++|++|++++|++++ +|..++.
T Consensus 436 ~~l~~l~~L~~L~L~~n~-l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNM-LE-GEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp GGGGGCTTCCEEECCSSC-CC-SCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred HHHhcCCCCCEEECCCCc-cc-CcCCHHHcCCCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 888999999999999984 43 457777888999999999999876544 6788899999999999999985 7888899
Q ss_pred cccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCcccc--------
Q 003270 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLN-------- 670 (835)
Q Consensus 599 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------- 670 (835)
+++|++|++++|+ +++..+..+ ..+++|+.|++++|++++ .+|..+..+..+..+.+..+..+....
T Consensus 513 l~~L~~L~L~~N~-l~~~~p~~l---~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 513 LENLAILKLSNNS-FSGNIPAEL---GDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp CTTCCEEECCSSC-CEEECCGGG---GGCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred CCCCCEEECCCCc-ccCcCCHHH---cCCCCCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccc
Confidence 9999999999998 877777665 678899999999999887 567666666665555444322111100
Q ss_pred ---------ccccccCCCCCCccccccccCCCCCccc---ccCccccccccccccCCCCccccccC-cccccCccceEec
Q 003270 671 ---------WGASGCQPFESPSVYNSCGIFPHENIHE---SIDQPNRLLQNLNCVGCPNIRKVFIP-PQARCFHLSSLNL 737 (835)
Q Consensus 671 ---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~~L~~L~i~~~~~l~~~~~~-~~~~~~~L~~L~l 737 (835)
.+........++.+... ......... .....+..|+.|+++++. ++.. +| .++.+++|+.|++
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~-ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPC--NITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGY-IPKEIGSMPYLFILNL 663 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCS--CTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSC-CCGGGGGCTTCCEEEC
T ss_pred cccccccccccccchhhhcccccccc--ccccceecccCchhhhccccccEEECcCCc-cccc-CCHHHhccccCCEEeC
Confidence 00000111111110000 000000000 112335779999999874 4433 44 4899999999999
Q ss_pred cCCC---CccccccccccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCC
Q 003270 738 SLSA---NLKEVDVACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKIC 811 (835)
Q Consensus 738 ~~~~---~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~ 811 (835)
+++. .++.....+++|++|++++|.--..+|. .+++|++|++++|+++ +.+|. ...+.++....+.+||.+|
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~-~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS-GPIPE-MGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE-EECCS-SSSGGGSCGGGGCSCTEEE
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc-ccCCC-chhhccCCHHHhcCCchhc
Confidence 9863 4555566889999999999986667764 5789999999999986 55665 2445566777888999887
Q ss_pred ch
Q 003270 812 ST 813 (835)
Q Consensus 812 ~~ 813 (835)
..
T Consensus 742 g~ 743 (768)
T 3rgz_A 742 GY 743 (768)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-41 Score=398.58 Aligned_cols=572 Identities=19% Similarity=0.134 Sum_probs=287.3
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+....+..|..+++|++|++++|.+++..|.+++++++|++|++++|.+++..+..+.++++|++|+
T Consensus 25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCC-CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4688888887 456665556677888888888888888777777788888888888888877654444577777777777
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+.. ..++.+++|++|++++|. ++. ..+..++++++|++|++++|. +++..+..
T Consensus 104 L~~n~l~~~~~----------------~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 164 (680)
T 1ziw_A 104 LMSNSIQKIKN----------------NPFVKQKNLITLDLSHNG-LSS-TKLGTQVQLENLQELLLSNNK-IQALKSEE 164 (680)
T ss_dssp CCSSCCCCCCS----------------CTTTTCTTCCEEECCSSC-CSC-CCCCSSSCCTTCCEEECCSSC-CCCBCHHH
T ss_pred CCCCccCccCh----------------hHccccCCCCEEECCCCc-ccc-cCchhhcccccCCEEEccCCc-ccccCHHH
Confidence 77776654321 123344444455554442 221 112223445555555555554 44333332
Q ss_pred HH-HhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhhHHHhh---hccCccEEEccCCCccccccccCc
Q 003270 258 IA-LSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAIS---HSYMLEVLELDNCNLLTSVSLELP 330 (835)
Q Consensus 258 ~~-~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~ 330 (835)
+. ..+++|+.|++++|. ..+..+..+++|+.|++.++ .+.+.....+. ..++|++|++++|.+.+..|..+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 21 133555555555554 12333445566666666654 34333322222 235677777777766555554443
Q ss_pred ccceeeccccccccchhhccccccee---eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCc
Q 003270 331 RLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 407 (835)
Q Consensus 331 ~L~~L~~~~~~~l~~l~l~~~~l~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~ 407 (835)
.++ .++++.++++++.++.+ .+..+++|++|++++|.+++..+..+. .+++|++|++++| ...
T Consensus 244 ~l~------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~~-~~~ 309 (680)
T 1ziw_A 244 GLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-------GLFNVRYLNLKRS-FTK 309 (680)
T ss_dssp GGG------GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-------TCTTCCEEECTTC-BCC
T ss_pred ccC------cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc-------CCCCccEEeccch-hhh
Confidence 211 11244444444444443 356777888888888877765433322 3467888888763 322
Q ss_pred hh-----hhhh-ccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccc
Q 003270 408 NS-----VCEV-FSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASF 481 (835)
Q Consensus 408 ~~-----~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~ 481 (835)
+. .|.. -..+..+++|++|++++|. ++.++. .....+++|+++++++|.
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------------~~~~~l~~L~~L~Ls~n~------- 364 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-----------------NMFTGLINLKYLSLSNSF------- 364 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-----------------TTTTTCTTCCEEECTTCB-------
T ss_pred cccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-----------------hHhccccCCcEEECCCCc-------
Confidence 11 1110 0012567777777777765 332210 001123344444444432
Q ss_pred ccccccccccCcCCCCcccccccceeEEEeecCCccccc-ccc--cCCCcceEecccCCCCccchhhhhhhcCCCccEEe
Q 003270 482 VPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD-AYI--NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLI 558 (835)
Q Consensus 482 ~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~-~~~--~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~ 558 (835)
+.. ..++. .+. ..++|+.|++++| .+.. ..+..+..+++|+.|+
T Consensus 365 -------------------------~~~------~~l~~~~f~~~~~~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 365 -------------------------TSL------RTLTNETFVSLAHSPLHILNLTKN-KISK-IESDAFSWLGHLEVLD 411 (680)
T ss_dssp -------------------------SCC------CEECTTTTGGGTTSCCCEEECTTS-CCCE-ECTTTTTTCTTCCEEE
T ss_pred -------------------------hhh------hhcchhhhcccccCcCceEECCCC-CCCe-EChhhhhCCCCCCEEe
Confidence 100 00000 011 1134444444444 2221 1223334444444444
Q ss_pred ccCCCCcCchhhHhhhhccccceeeecCccccCch-HHHhccccccEEecccccccchh--hHHHHHhcCCCCCccEEeC
Q 003270 559 LMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE-PVFESCLQLKVLKLQACKYLTNT--SLESLYKKGSLPALQELDL 635 (835)
Q Consensus 559 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~~~L~~L~l 635 (835)
+++|...+......+..+++|++|++++|.+.+++ ..+..+++|++|++++|. ++.. .+.. +..+++|+.|++
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~---~~~l~~L~~L~L 487 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSP---FQPLRNLTILDL 487 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC-CBCTTCSSCT---TTTCTTCCEEEC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc-ccccccCCcc---cccCCCCCEEEC
Confidence 44444332221234444555555555555544432 244445555555555544 3211 1111 244555555555
Q ss_pred CCcccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCC
Q 003270 636 SYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGC 715 (835)
Q Consensus 636 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 715 (835)
++|++++ ..+..+..+++|++|++++|. +..++.+..+..
T Consensus 488 s~N~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~-------------------------------------- 527 (680)
T 1ziw_A 488 SNNNIAN-INDDMLEGLEKLEILDLQHNN-LARLWKHANPGG-------------------------------------- 527 (680)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTS--------------------------------------
T ss_pred CCCCCCc-CChhhhccccccCEEeCCCCC-ccccchhhccCC--------------------------------------
Confidence 5555543 233344555555555555553 111100000000
Q ss_pred CCccccccCcccccCccceEeccCCC--Cccc-cccccccccEEecccccchhhhh----hcCCccceeecccCcCChhH
Q 003270 716 PNIRKVFIPPQARCFHLSSLNLSLSA--NLKE-VDVACFNLCFLNLSNCCSLETLK----LDCPKLTSLFLQSCNIDEEG 788 (835)
Q Consensus 716 ~~l~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~~~i~~~~ 788 (835)
....+..+++|+.|+++++. .++. .+..+++|++|+++++. ++.++ ..+++|+.|++++|.++ ..
T Consensus 528 ------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~~ 599 (680)
T 1ziw_A 528 ------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLIT-SV 599 (680)
T ss_dssp ------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCC-BC
T ss_pred ------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCC-cc
Confidence 00012233333333333321 1111 11234555555555543 34444 24688999999999976 33
Q ss_pred HHHHHh-cCCCcceeecccccCCCchH
Q 003270 789 VESAIT-QCGMLETLDVRFCPKICSTS 814 (835)
Q Consensus 789 l~~~~~-~~~~L~~l~l~~c~~l~~~~ 814 (835)
.+..+. .+++|+.+++++||..|++.
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ChhHhcccccccCEEEccCCCcccCCc
Confidence 355566 78899999999999888865
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.2e-40 Score=387.48 Aligned_cols=563 Identities=19% Similarity=0.134 Sum_probs=368.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 202 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~ 202 (835)
+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+..+.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--------------- 89 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS--------------- 89 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC---------------
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC---------------
Confidence 57888888888888777777888888888888888887777777777777777777776655332
Q ss_pred hHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCcc-
Q 003270 203 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLE- 279 (835)
Q Consensus 203 i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~- 279 (835)
...++.+++|++|++++| .+.. ..+..++++++|++|++++|. +++..+..+. ++++|++|++++|. .++..
T Consensus 90 -~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 90 -DKTFAFCTNLTELHLMSN-SIQK-IKNNPFVKQKNLITLDLSHNG-LSSTKLGTQV-QLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp -TTTTTTCTTCSEEECCSS-CCCC-CCSCTTTTCTTCCEEECCSSC-CSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHH
T ss_pred -hhhhccCCCCCEEECCCC-ccCc-cChhHccccCCCCEEECCCCc-ccccCchhhc-ccccCCEEEccCCcccccCHHH
Confidence 124677888888888887 3542 113467899999999999998 6655444444 78999999999986 33332
Q ss_pred --ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceee
Q 003270 280 --SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIM 357 (835)
Q Consensus 280 --~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~ 357 (835)
...+++|++|++++| .+.+..+..+..+.+|+.|++.++.+.......++ .
T Consensus 165 ~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--------------------------~ 217 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC--------------------------L 217 (680)
T ss_dssp HGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH--------------------------H
T ss_pred hhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHH--------------------------H
Confidence 235689999999997 78887788889999999999998875432211110 0
Q ss_pred eccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccc
Q 003270 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 437 (835)
Q Consensus 358 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 437 (835)
....++|+.|++++|.+++..+..+..+ ..++|++|++++ +.+++..+..+ ..+++|++|+++++. +..+
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~~~L~~L~Ls~-n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~ 287 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGL-----KWTNLTMLDLSY-NNLNVVGNDSF---AWLPQLEYFFLEYNN-IQHL 287 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGG-----GGSCCCEEECTT-SCCCEECTTTT---TTCTTCCEEECCSCC-BSEE
T ss_pred HhhhccccEEEccCCcccccChhHhhcc-----CcCCCCEEECCC-CCcCccCcccc---cCcccccEeeCCCCc-cCcc
Confidence 0123556666666666665543333332 123477777777 46666555555 566777777777664 3322
Q ss_pred cccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccc--cccccccccccCcCCCCcccccccceeEEEeecCC
Q 003270 438 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS--FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC 515 (835)
Q Consensus 438 ~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~--~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~ 515 (835)
.. .....+++|+.+++.++..-.... .+| .+....+..+++|+.+++++|.+.
T Consensus 288 ~~-----------------~~~~~l~~L~~L~L~~~~~~~~~~~~~lp-~i~~~~~~~l~~L~~L~l~~n~l~------- 342 (680)
T 1ziw_A 288 FS-----------------HSLHGLFNVRYLNLKRSFTKQSISLASLP-KIDDFSFQWLKCLEHLNMEDNDIP------- 342 (680)
T ss_dssp CT-----------------TTTTTCTTCCEEECTTCBCCC------CC-EECTTTTTTCTTCCEEECCSCCBC-------
T ss_pred Ch-----------------hhhcCCCCccEEeccchhhhccccccccc-ccChhhcccCCCCCEEECCCCccC-------
Confidence 10 001124455555554432111100 111 233334777888888888888875
Q ss_pred cccccccccCCCcceEecccCCCCccchhhh-hhh--cCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSA-TTT--SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN- 591 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~-~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~- 591 (835)
+..+..+..+++|++|++++|. +....++. .+. ..++|+.|++++|...+. .+..+..+++|+.|++++|.+.+
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~-~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSF-TSLRTLTNETFVSLAHSPLHILNLTKNKISKI-ESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCB-SCCCEECTTTTGGGTTSCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCEEE
T ss_pred CCChhHhccccCCcEEECCCCc-hhhhhcchhhhcccccCcCceEECCCCCCCeE-ChhhhhCCCCCCEEeCCCCcCccc
Confidence 5556667888888888888873 22222221 122 235788888888775433 35667778888888888887764
Q ss_pred ch-HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchH-HHHHHHhhCCCccEEEccCCCCCccc
Q 003270 592 LE-PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS-AIEELLAYCTHLTHVSLNGCGNMHDL 669 (835)
Q Consensus 592 l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 669 (835)
++ ..+.++++|++|++++|+ +++..+..+ ..+++|+.|++++|.+... .++..+..+++|++|++++|. +.
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~-- 493 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNK-YLQLTRNSF---ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IA-- 493 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCS-EEECCTTTT---TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CC--
T ss_pred cCcccccCcccccEEecCCCC-cceeChhhh---hcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CC--
Confidence 44 467777888888888877 665544443 5677788888887776521 345566777777777777764 21
Q ss_pred cccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCCcccc---
Q 003270 670 NWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEV--- 746 (835)
Q Consensus 670 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~--- 746 (835)
.+....+..+++|+.|+++++. ++.+
T Consensus 494 --------------------------------------------------~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 522 (680)
T 1ziw_A 494 --------------------------------------------------NINDDMLEGLEKLEILDLQHNN-LARLWKH 522 (680)
T ss_dssp --------------------------------------------------CCCTTTTTTCTTCCEEECCSSC-CGGGGST
T ss_pred --------------------------------------------------cCChhhhccccccCEEeCCCCC-ccccchh
Confidence 1111124455666666666542 2221
Q ss_pred ---------ccccccccEEecccccchhhhh----hcCCccceeecccCcCChhHHH-HHHhcCCCcceeecccccCCCc
Q 003270 747 ---------DVACFNLCFLNLSNCCSLETLK----LDCPKLTSLFLQSCNIDEEGVE-SAITQCGMLETLDVRFCPKICS 812 (835)
Q Consensus 747 ---------~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~~~i~~~~l~-~~~~~~~~L~~l~l~~c~~l~~ 812 (835)
...+++|++|+++++. ++.+| ..+++|++|++++|.++ .+| ..|..+++|++|++++| .+..
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~~l~~L~~L~L~~N-~l~~ 598 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLNNLN--TLPASVFNNQVSLKSLNLQKN-LITS 598 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECTTS-CCCB
T ss_pred hccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCCCCC--cCCHhHhCCCCCCCEEECCCC-cCCc
Confidence 3467999999999985 55665 35799999999999986 444 45789999999999998 4666
Q ss_pred hHHHHHHHhCCcchhhhcc
Q 003270 813 TSMGRLRAACPSLKRIFSS 831 (835)
Q Consensus 813 ~~~~~~~~~~p~l~~l~~~ 831 (835)
.....+...+++|+++.++
T Consensus 599 ~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CCHHHHHHHHTTCSEEECT
T ss_pred cChhHhcccccccCEEEcc
Confidence 5555554467788777553
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.3e-39 Score=369.52 Aligned_cols=524 Identities=18% Similarity=0.116 Sum_probs=273.7
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEec
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 178 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 178 (835)
++++|++++ +.+....+.+|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 34 ~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccC-CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 567777777 4566555666777777777777777777666677777777777777777776656666666666666666
Q ss_pred cCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 179 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
++|.+..+. ...++.+++|++|++++| .+.....+.. ..+++|++|++++|. ++...+..+
T Consensus 113 ~~n~i~~l~----------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~ 173 (606)
T 3t6q_A 113 IQTGISSID----------------FIPLHNQKTLESLYLGSN-HISSIKLPKG-FPTEKLKVLDFQNNA-IHYLSKEDM 173 (606)
T ss_dssp TTSCCSCGG----------------GSCCTTCTTCCEEECCSS-CCCCCCCCTT-CCCTTCCEEECCSSC-CCEECHHHH
T ss_pred cccCcccCC----------------cchhccCCcccEEECCCC-cccccCcccc-cCCcccCEEEcccCc-ccccChhhh
Confidence 666554431 023456666777777776 3442122222 337778888888877 665555555
Q ss_pred HHhCCCCc--EEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccce
Q 003270 259 ALSCANLR--ILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQN 334 (835)
Q Consensus 259 ~~~~~~L~--~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 334 (835)
. .+++|+ .|++++|. .+++......+|++|++.++. ..+..+..+.++....+.
T Consensus 174 ~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~l~~l~----------------- 231 (606)
T 3t6q_A 174 S-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ----NLLVIFKGLKNSTIQSLW----------------- 231 (606)
T ss_dssp H-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS----CHHHHHHHTTTCEEEEEE-----------------
T ss_pred h-hhcccceeEEecCCCccCccChhHhhhccccccccCCch----hHHHHhhhccccchhhee-----------------
Confidence 5 777777 77777765 333334444566666666652 122233333332222211
Q ss_pred eeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhc
Q 003270 335 IRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 414 (835)
Q Consensus 335 L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~ 414 (835)
+..+..+....+....+.+ + .-.++++|++++ +.+++..+..+
T Consensus 232 -----------------------~~~~~~~~~~~i~~~~~~~--------l-----~~~~L~~L~l~~-n~l~~~~~~~~ 274 (606)
T 3t6q_A 232 -----------------------LGTFEDMDDEDISPAVFEG--------L-----CEMSVESINLQK-HYFFNISSNTF 274 (606)
T ss_dssp -----------------------CCCCTTSCCCCCCGGGGGG--------G-----GGSEEEEEECTT-CCCSSCCTTTT
T ss_pred -----------------------chhhccccccccChhHhch--------h-----hcCceeEEEeec-CccCccCHHHh
Confidence 1111111111121111111 1 012677777777 47766655555
Q ss_pred cCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcC
Q 003270 415 SDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGIC 494 (835)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~ 494 (835)
..+++|++|+++++. ++.++ .. +..+
T Consensus 275 ---~~l~~L~~L~l~~n~-l~~lp---------------------------------------------~~-----l~~l 300 (606)
T 3t6q_A 275 ---HCFSGLQELDLTATH-LSELP---------------------------------------------SG-----LVGL 300 (606)
T ss_dssp ---TTCTTCSEEECTTSC-CSCCC---------------------------------------------SS-----CCSC
T ss_pred ---ccccCCCEEeccCCc-cCCCC---------------------------------------------hh-----hccc
Confidence 667777777777764 33221 11 2333
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh-hHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG-LYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 573 (835)
++|+.+++++|.+. +..|..+..+++|++|++++|. +.....+..+..+++|++|++++|....... +..+
T Consensus 301 ~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 301 STLKKLVLSANKFE-------NLCQISASNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp TTCCEEECTTCCCS-------BGGGGCGGGCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred ccCCEEECccCCcC-------cCchhhhhccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 34444444444332 2223344445555555555542 2211111224445555555555544322110 2234
Q ss_pred hhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC
Q 003270 574 RSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 652 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~ 652 (835)
..+++|++|++++|.+.++ +..+..+++|++|++++|+ +++..+.. .+..+++|+.|++++|.+.+ ..+..+..+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l 448 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQS--PFQNLHLLKVLNLSHSLLDI-SSEQLFDGL 448 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCC--TTTTCTTCCEEECTTCCCBT-TCTTTTTTC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccch--hhhCcccCCEEECCCCccCC-cCHHHHhCC
Confidence 4555555555555555543 2345555555555555554 43332221 12445555555555555544 234444555
Q ss_pred CCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCcc
Q 003270 653 THLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHL 732 (835)
Q Consensus 653 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L 732 (835)
++|++|++++|....... . ....+..+++|
T Consensus 449 ~~L~~L~L~~n~l~~~~~----~----------------------------------------------~~~~~~~l~~L 478 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNI----Q----------------------------------------------KTNSLQTLGRL 478 (606)
T ss_dssp TTCCEEECTTCBCGGGEE----C----------------------------------------------SSCGGGGCTTC
T ss_pred CCCCEEECCCCCCCcccc----c----------------------------------------------cchhhccCCCc
Confidence 555555555553110000 0 00012223333
Q ss_pred ceEeccCCCCcc---ccccccccccEEecccccchhhhh---hcCCccceeecccCcCChhHHHHHHhcCCCcceeeccc
Q 003270 733 SSLNLSLSANLK---EVDVACFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRF 806 (835)
Q Consensus 733 ~~L~l~~~~~l~---~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~ 806 (835)
+.|+++++.--. .....+++|++|++++|.--...+ ..+++| .|++++|+++ ...|..+..+++|++|++++
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC-CCCGGGHHHHHTSSEEECTT
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc-ccCHhhcccCCCCCEEeCCC
Confidence 344443321111 111234556666666654322223 246788 9999999987 44566788899999999999
Q ss_pred ccCCCchHHHHHH
Q 003270 807 CPKICSTSMGRLR 819 (835)
Q Consensus 807 c~~l~~~~~~~~~ 819 (835)
||..|++....+.
T Consensus 557 N~~~c~c~~~~~~ 569 (606)
T 3t6q_A 557 NPLDCTCSNIYFL 569 (606)
T ss_dssp CCEECSGGGHHHH
T ss_pred CCccccCCcHHHH
Confidence 9999998755544
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-39 Score=375.32 Aligned_cols=526 Identities=16% Similarity=0.111 Sum_probs=288.6
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+.+..+..|..+++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..+.++++|++|+
T Consensus 32 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 4567777777 455555555666777777777777777666666677777777777777776665566666666666666
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+. ...++.+++|++|++++| .+....+|..++++++|++|++++|. +++..+..
T Consensus 111 L~~n~l~~~~----------------~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 172 (606)
T 3vq2_A 111 AVETKLASLE----------------SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVND 172 (606)
T ss_dssp CTTSCCCCSS----------------SSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTT
T ss_pred ccCCcccccc----------------ccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhh
Confidence 6666554322 023566777888888877 45433456677888888888888887 66543332
Q ss_pred HH--HhCCC-CcEEecCCCC--CCCccccCCCCCcEEecCCCCCCC-hhhHHHhhhccCccEEEccCCCccccccccCcc
Q 003270 258 IA--LSCAN-LRILNSSYCP--NISLESVRLPMLTVLQLHSCEGIT-SASMAAISHSYMLEVLELDNCNLLTSVSLELPR 331 (835)
Q Consensus 258 ~~--~~~~~-L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 331 (835)
+. .+++. ++.|++++|. .++.......+|++|+++++ .+. +..+..+..+++|+.+++....+.+. ..
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----~~ 246 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN-FNSSNIMKTCLQNLAGLHVHRLILGEFKDE-----RN 246 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC-CSCHHHHHHHHHTTTTCEEEEEEEECCTTS-----CC
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC-ccchhHHHHHhccccccccccccccccccC-----Cc
Confidence 22 13333 5588888886 45555555558888888887 444 55666777888888777654322110 00
Q ss_pred cceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhh
Q 003270 332 LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 411 (835)
Q Consensus 332 L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 411 (835)
+..+ .+ ....++. .-.++.+++..++.+++..+
T Consensus 247 l~~~---------------------------------------~~---~~~~~l~-----~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 247 LEIF---------------------------------------EP---SIMEGLC-----DVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp CSCC---------------------------------------CG---GGGTTGG-----GSEEEEEEECCCTTCCGGGG
T ss_pred cccc---------------------------------------Ch---HHhhhhh-----hccHhheecccccccccccc
Confidence 0000 00 0001111 01455666655466666555
Q ss_pred hhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccccccccccccc
Q 003270 412 EVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 491 (835)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l 491 (835)
. + ..+++|+.|++.++. +..++ .+
T Consensus 280 ~-~---~~l~~L~~L~l~~~~-~~~l~---------------------------------------------------~l 303 (606)
T 3vq2_A 280 K-F---HCLANVSAMSLAGVS-IKYLE---------------------------------------------------DV 303 (606)
T ss_dssp S-C---GGGTTCSEEEEESCC-CCCCC---------------------------------------------------CC
T ss_pred c-c---ccCCCCCEEEecCcc-chhhh---------------------------------------------------hc
Confidence 4 3 566777777777664 22211 02
Q ss_pred CcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCch-hh
Q 003270 492 GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD-GL 570 (835)
Q Consensus 492 ~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 570 (835)
..+++|+.+++++|.+ +.+|. + .+++|++|++++|..+.. . .+..+++|++|++++|...... .+
T Consensus 304 ~~~~~L~~L~l~~n~l--------~~lp~-~-~l~~L~~L~l~~n~~~~~--~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL--------KQFPT-L-DLPFLKSLTLTMNKGSIS--F--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CTTCCCSEEEEESCCC--------SSCCC-C-CCSSCCEEEEESCSSCEE--C--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred cccccCCEEEcccccC--------ccccc-C-CCCccceeeccCCcCccc--h--hhccCCCCCEEECcCCccCCCcchh
Confidence 2233333333333333 33331 2 445555555555432211 1 2334555555555555432211 13
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++|++|++++|.+.++|..+..+++|++|++++|+ +++..+.. .+..+++|+.|++++|.+.+ ..+..+.
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~~~~~ 445 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFS--AFLSLEKLLYLDISYTNTKI-DFDGIFL 445 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE-EESTTTTT--TTTTCTTCCEEECTTSCCEE-CCTTTTT
T ss_pred hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc-cCCccChh--hhhccccCCEEECcCCCCCc-cchhhhc
Confidence 34555555555555555555555555555555555555555 44333211 12445555555555555544 3344455
Q ss_pred hCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccC
Q 003270 651 YCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCF 730 (835)
Q Consensus 651 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~ 730 (835)
.+++|++|++++|...... ....++.++
T Consensus 446 ~l~~L~~L~l~~n~l~~~~----------------------------------------------------~~~~~~~l~ 473 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNT----------------------------------------------------LSNVFANTT 473 (606)
T ss_dssp TCTTCCEEECTTCEEGGGE----------------------------------------------------ECSCCTTCT
T ss_pred CCCCCCEEECCCCcCCCcc----------------------------------------------------hHHhhccCC
Confidence 5555555555555311000 000122233
Q ss_pred ccceEeccCCCCcc---ccccccccccEEecccccchhhhh---hcCCccceeecccCcCChhHHHHHHhcCC-Ccceee
Q 003270 731 HLSSLNLSLSANLK---EVDVACFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCG-MLETLD 803 (835)
Q Consensus 731 ~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~~~i~~~~l~~~~~~~~-~L~~l~ 803 (835)
+|+.|+++++.-.. .....+++|++|++++|.-....| ..+++|++|++++|+++ .+|..+..++ +|++|+
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEESCGGGSCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccCHhHhhhcccCcEEE
Confidence 33333333331111 111234555555665554222222 24688999999999985 6776688887 699999
Q ss_pred cccccCCCchHHHHHHHhCC
Q 003270 804 VRFCPKICSTSMGRLRAACP 823 (835)
Q Consensus 804 l~~c~~l~~~~~~~~~~~~p 823 (835)
+++||..|++....+.+-..
T Consensus 552 l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 552 LTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp CCSCCCCCSSTTHHHHTTTT
T ss_pred ccCCCcccCCccHHHHHHHH
Confidence 99999999988877765443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.8e-39 Score=368.43 Aligned_cols=502 Identities=17% Similarity=0.159 Sum_probs=354.1
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
..+.+++++..++.. ....+..++++++|++++ +.+....+.+|..+++|++|++++|.+.+..|.+|+.+++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 445666666544321 123467889999999999 567777788899999999999999999998899999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEecccchH----HHhhcCCCCc--EEeecCCCC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLH--LLDIASCHK 223 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~~~~i~----~~~~~~~~L~--~L~l~~~~~ 223 (835)
+++|.+++..+..+.++++|++|++++|.+..+. ..+++|++|++++|.+. ..++.+++|+ +|++++| .
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-D 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-C
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-c
Confidence 9999998766777899999999999999887642 24788888888888765 5677888888 7888887 3
Q ss_pred CCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC--cEEecCCCCC-----CCc-cccCC--CCCcEEecCC
Q 003270 224 LSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL--RILNSSYCPN-----ISL-ESVRL--PMLTVLQLHS 293 (835)
Q Consensus 224 l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L--~~L~l~~~~~-----l~~-~~~~~--~~L~~L~l~~ 293 (835)
+.. ++.......+|++|++++|.. .+..+. .+.++ +.+.+..... ++. .+..+ .+|++|++++
T Consensus 191 l~~--~~~~~~~~~~L~~L~l~~~~~----~~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 191 IAG--IEPGAFDSAVFQSLNFGGTQN----LLVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp CCE--ECTTTTTTCEEEEEECTTCSC----HHHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred cCc--cChhHhhhccccccccCCchh----HHHHhh-hccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 442 222334446788888888862 122222 44444 3344433221 111 11111 1455555555
Q ss_pred CCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCc
Q 003270 294 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNS 373 (835)
Q Consensus 294 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~ 373 (835)
+ .+.+..+..++.+++|++|++++|.+. .+|. .+..+++|++|++++|.
T Consensus 264 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-----------------------------~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 264 H-YFFNISSNTFHCFSGLQELDLTATHLS-ELPS-----------------------------GLVGLSTLKKLVLSANK 312 (606)
T ss_dssp C-CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-----------------------------SCCSCTTCCEEECTTCC
T ss_pred C-ccCccCHHHhccccCCCEEeccCCccC-CCCh-----------------------------hhcccccCCEEECccCC
Confidence 4 444444444555555666666555432 2221 35567778888888887
Q ss_pred cccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhh-hhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCC
Q 003270 374 LQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC-EVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGC 452 (835)
Q Consensus 374 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~ 452 (835)
+++..+.... .+++|++|++++| .+.+..+ ..+ ..+++|++|++++|. ++.+...
T Consensus 313 l~~~~~~~~~-------~l~~L~~L~l~~n-~~~~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~------------ 368 (606)
T 3t6q_A 313 FENLCQISAS-------NFPSLTHLSIKGN-TKRLELGTGCL---ENLENLRELDLSHDD-IETSDCC------------ 368 (606)
T ss_dssp CSBGGGGCGG-------GCTTCSEEECCSC-SSCCBCCSSTT---TTCTTCCEEECCSSC-CCEEEES------------
T ss_pred cCcCchhhhh-------ccCcCCEEECCCC-Ccccccchhhh---hccCcCCEEECCCCc-cccccCc------------
Confidence 7765433222 4578888888884 5554332 234 677888888888875 4322100
Q ss_pred cccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccccc-ccccCCCcceE
Q 003270 453 RAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSL 531 (835)
Q Consensus 453 ~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~-~~~~~~~L~~L 531 (835)
......+++|++++++++.-.. ..|.. +..+++|+.+++++|.+. +..+. .+..+++|++|
T Consensus 369 ---~~~~~~l~~L~~L~l~~n~l~~---~~~~~-----~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 369 ---NLQLRNLSHLQSLNLSYNEPLS---LKTEA-----FKECPQLELLDLAFTRLK-------VKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp ---TTTTTTCTTCCEEECCSCSCEE---ECTTT-----TTTCTTCSEEECTTCCEE-------CCTTCCTTTTCTTCCEE
T ss_pred ---chhcccCCCCCEEECCCCcCCc---CCHHH-----hcCCccCCeEECCCCcCC-------CcccchhhhCcccCCEE
Confidence 0011245677777777754211 12222 778899999999999886 44443 48899999999
Q ss_pred ecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh--hHhhhhccccceeeecCccccCc-hHHHhccccccEEecc
Q 003270 532 DASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG--LYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQ 608 (835)
Q Consensus 532 ~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~ 608 (835)
++++|. +. +..+..+..+++|++|++++|+..+... +..+..+++|++|++++|.++++ |..+..+++|++|+++
T Consensus 431 ~l~~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 431 NLSHSL-LD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp ECTTCC-CB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ECCCCc-cC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 999984 43 3456668899999999999998765321 25688999999999999999986 5689999999999999
Q ss_pred cccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 609 ACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 609 ~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
+|+ +++..+..+ ..++.| .|++++|++++ ..+..+..+++|++|++++|+-.
T Consensus 509 ~N~-l~~~~~~~l---~~l~~L-~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 509 HNR-LTSSSIEAL---SHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SSC-CCGGGGGGG---TTCCSC-EEECCSSCCCC-CCGGGHHHHHTSSEEECTTCCEE
T ss_pred CCc-cCcCChhHh---Cccccc-EEECcCCcccc-cCHhhcccCCCCCEEeCCCCCcc
Confidence 998 988877765 788999 99999999987 56777889999999999999843
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-36 Score=348.52 Aligned_cols=500 Identities=15% Similarity=0.097 Sum_probs=353.7
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
..+.+++++..++.. ....++.++++++|++++ +.+....+.+|..+++|++|++++|.+.+..|.+|+++++|++|+
T Consensus 33 ~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEEECCCCCcCEe-ChhhccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 345566665443321 112456788999999999 577777778899999999999999999998899999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccc--c---ccCCCCCcEEEecccchH----HHhhcCCC----CcEEeecC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMR--V---SIRCPQLEHLSLKRSNMA----QAVLNCPL----LHLLDIAS 220 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~---~~~l~~L~~L~l~~~~i~----~~~~~~~~----L~~L~l~~ 220 (835)
+++|.+.+..+..++++++|++|++++|.+.. + ..++++|++|++++|.+. ..++.+++ +++|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999987776789999999999999998864 2 347999999999999876 23334433 45899999
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC-----CCC---c-cccCC--CCCcEE
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-----NIS---L-ESVRL--PMLTVL 289 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-----~l~---~-~~~~~--~~L~~L 289 (835)
|. ++ .++.......+|++|++++|. +.+........+++.++.+++.... .++ . .+..+ -.++.+
T Consensus 191 n~-l~--~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 191 NP-ID--FIQDQAFQGIKLHELTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp CC-CC--EECTTTTTTCEEEEEEEESCC-SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred CC-cc--eeCcccccCceeeeeeccCCc-cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 84 55 234333444589999999998 6655555545589999988875432 111 0 00111 134445
Q ss_pred ecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeee
Q 003270 290 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINI 369 (835)
Q Consensus 290 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l 369 (835)
++..+..+.+..+. +..+++|++|+++++.+. .+| .+..+++|++|++
T Consensus 267 ~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~------------------------------~l~~~~~L~~L~l 314 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE------------------------------DVPKHFKWQSLSI 314 (606)
T ss_dssp EECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC------------------------------CCCTTCCCSEEEE
T ss_pred eccccccccccccc-cccCCCCCEEEecCccch-hhh------------------------------hccccccCCEEEc
Confidence 55333344444443 555666666666665431 111 2455667777777
Q ss_pred ccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEec
Q 003270 370 TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSL 449 (835)
Q Consensus 370 ~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l 449 (835)
++|.++... .. .+++|++|++++|..+... . ...+++|++|++++|. ++.+..
T Consensus 315 ~~n~l~~lp--~~--------~l~~L~~L~l~~n~~~~~~---~---~~~l~~L~~L~ls~n~-l~~~~~---------- 367 (606)
T 3vq2_A 315 IRCQLKQFP--TL--------DLPFLKSLTLTMNKGSISF---K---KVALPSLSYLDLSRNA-LSFSGC---------- 367 (606)
T ss_dssp ESCCCSSCC--CC--------CCSSCCEEEEESCSSCEEC---C---CCCCTTCCEEECCSSC-EEEEEE----------
T ss_pred ccccCcccc--cC--------CCCccceeeccCCcCccch---h---hccCCCCCEEECcCCc-cCCCcc----------
Confidence 777763221 11 3577888888775333221 2 2567788888887775 332210
Q ss_pred cCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc-cccccCCCc
Q 003270 450 VGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLL 528 (835)
Q Consensus 450 ~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L 528 (835)
.......+++|+++++++|. +.. +|.. +..+++|+.+++++|.+. +..+ ..+..+++|
T Consensus 368 -----~~~~~~~~~~L~~L~L~~n~-l~~---~~~~-----~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 368 -----CSYSDLGTNSLRHLDLSFNG-AII---MSAN-----FMGLEELQHLDFQHSTLK-------RVTEFSAFLSLEKL 426 (606)
T ss_dssp -----CCHHHHCCSCCCEEECCSCS-EEE---ECCC-----CTTCTTCCEEECTTSEEE-------STTTTTTTTTCTTC
T ss_pred -----hhhhhccCCcccEeECCCCc-ccc---chhh-----ccCCCCCCeeECCCCccC-------CccChhhhhccccC
Confidence 01111245667777776654 221 2222 778899999999999886 5555 578899999
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l 607 (835)
++|++++|. +. +..+..+..+++|++|++++|...+...+..+..+++|++|++++|.++++ |..+..+++|++|++
T Consensus 427 ~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 427 LYLDISYTN-TK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp CEEECTTSC-CE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECcCCC-CC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 999999984 43 345667889999999999999876543467789999999999999999985 457899999999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC-CccEEEccCCCCCc
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT-HLTHVSLNGCGNMH 667 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 667 (835)
++|+ +++..+..+ ..+++|+.|++++|+++. +|..+..++ +|++|++++|+-..
T Consensus 505 s~N~-l~~~~~~~~---~~l~~L~~L~l~~N~l~~--~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 505 SHNN-LLFLDSSHY---NQLYSLSTLDCSFNRIET--SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CSSC-CSCEEGGGT---TTCTTCCEEECTTSCCCC--EESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCc-CCCcCHHHc---cCCCcCCEEECCCCcCcc--cCHhHhhhcccCcEEEccCCCccc
Confidence 9998 888766665 788999999999999985 555578887 69999999998543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=362.25 Aligned_cols=284 Identities=14% Similarity=0.116 Sum_probs=154.1
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhh-HHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF-FHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
+++++|++++ +.+....+..|..+++|++|++++|...+.+ |.+|+++++|++|++++|.+.+..|..+.++++|++|
T Consensus 24 ~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4677777777 4566555566677777777777776444444 5667777777777777777766666666666777777
Q ss_pred eccCcccccc-ccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHH
Q 003270 177 EITKCRVMRV-SIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 255 (835)
Q Consensus 177 ~l~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~ 255 (835)
++++|.+... ... ..+.++++|++|++++| .++....+..++++++|++|++++|. +++..+
T Consensus 103 ~Ls~n~l~~~~~~~---------------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~ 165 (844)
T 3j0a_A 103 RLYFCGLSDAVLKD---------------GYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE 165 (844)
T ss_dssp ECTTCCCSSCCSTT---------------CCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS
T ss_pred eCcCCCCCcccccC---------------ccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc-CCeeCH
Confidence 7766665431 000 01344445555555554 23211112334555555555555554 332222
Q ss_pred HHHHHhC--CCCcEEecCCCC---CCCccccCCCC------CcEEecCCCCCCChhhHHHhhh---ccCccEEEccCCCc
Q 003270 256 REIALSC--ANLRILNSSYCP---NISLESVRLPM------LTVLQLHSCEGITSASMAAISH---SYMLEVLELDNCNL 321 (835)
Q Consensus 256 ~~~~~~~--~~L~~L~l~~~~---~l~~~~~~~~~------L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~ 321 (835)
..+. .+ ++|+.|++++|. ..+..++.+++ |++|++++| .+.+..+..+.. ...++.+.+..+..
T Consensus 166 ~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 166 HELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp GGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecccccc
Confidence 2221 11 555666665554 23333333333 777777765 455444444443 24566666654322
Q ss_pred cccccccCcccceeeccccccccchhhcccccceeeecc--CCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEe
Q 003270 322 LTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSN--CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVD 399 (835)
Q Consensus 322 ~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~ 399 (835)
..... ..+++ .. ... .+.+ +++|+.|++++|.+.+..+..+. .+++|+.|+
T Consensus 244 ~~~~~--~~~l~-----------~~--~~~-----~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~ 296 (844)
T 3j0a_A 244 GAGFG--FHNIK-----------DP--DQN-----TFAGLARSSVRHLDLSHGFVFSLNSRVFE-------TLKDLKVLN 296 (844)
T ss_dssp BCSSS--CSSST-----------TG--GGT-----TTTTTTTSCCCEEECTTCCCCEECSCCSS-------SCCCCCEEE
T ss_pred ccccc--ccccC-----------CC--Chh-----hhhccccCCccEEECCCCcccccChhhhh-------cCCCCCEEE
Confidence 11100 00000 00 000 1122 36777888888877765433322 347888888
Q ss_pred cCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 400 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 400 l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+++ +.+++..+..+ ..+++|++|++++|.
T Consensus 297 L~~-n~i~~~~~~~~---~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 297 LAY-NKINKIADEAF---YGLDNLQVLNLSYNL 325 (844)
T ss_dssp EES-CCCCEECTTTT---TTCSSCCEEEEESCC
T ss_pred CCC-CcCCCCChHHh---cCCCCCCEEECCCCC
Confidence 888 57777766666 677888888888775
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.8e-35 Score=332.78 Aligned_cols=233 Identities=16% Similarity=0.156 Sum_probs=110.8
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 202 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~ 202 (835)
++|++|++++|.+++..+.+|+.+++|++|++++|.+++..+..+.++++|++|++++|.+..+.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------- 90 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS--------------- 90 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC---------------
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC---------------
Confidence 34555555555555554555555555555555555555444444444444444444444433211
Q ss_pred hHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCcc
Q 003270 203 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLE 279 (835)
Q Consensus 203 i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~ 279 (835)
...++.+++|++|++++| .++....+..++++++|++|++++|..++...+..+. .+++|++|++++|. ..+..
T Consensus 91 -~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 91 -SSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp -HHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTT
T ss_pred -HHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhh-cccccCeeeccCCcccccChhh
Confidence 122344444444444444 2221112223344455555555544422211111222 45555555555544 24445
Q ss_pred ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeec
Q 003270 280 SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 359 (835)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~ 359 (835)
+..+++|++|++..+ .........+..+++|++|++++|.+.+......+ ...
T Consensus 168 l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------------------~~~ 220 (549)
T 2z81_A 168 LKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP--------------------------VDE 220 (549)
T ss_dssp TTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS--------------------------SCC
T ss_pred hhccccCceEecccC-cccccchhhHhhcccccEEEccCCccccccccccc--------------------------hhh
Confidence 556667777777665 34333333334577788888877765432100000 122
Q ss_pred cCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCC
Q 003270 360 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 403 (835)
Q Consensus 360 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c 403 (835)
.+++|+.+++++|.+++..+. .+......+++|+.+++++|
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~---~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFN---ELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHH---HHHGGGGGCTTCCEEEEESC
T ss_pred hhhcccceeccccccchhHHH---HHHHHhhhhccccccccccc
Confidence 355666677776666654322 22222234556666666664
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=350.76 Aligned_cols=506 Identities=18% Similarity=0.142 Sum_probs=317.0
Q ss_pred CCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCE
Q 003270 72 EDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKS 151 (835)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 151 (835)
+...+.++++...++.. ....+..++++++|+++++.......+.+|..+++|++|++++|.+.+..|.+|+.+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 34455666665444321 12335678899999999954444444678999999999999999999999999999999999
Q ss_pred EEecCCCCCcccccc--cccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchH----HHhhcC--CCCcEEee
Q 003270 152 LNVNDATLGNGVQEI--PINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNC--PLLHLLDI 218 (835)
Q Consensus 152 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~----~~~~~~--~~L~~L~l 218 (835)
|++++|.+++.++.. +..+++|++|++++|.+..+ ..++++|++|++++|.+. ..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999998866654 88899999999999987643 246777777777777654 334433 67777777
Q ss_pred cCCCCCCHHHHHHHHhcCCC------CCEEeCCCCCCCChHHHHHHHH--hCCCCcEEecCCCCCCCccccCCCCCcEEe
Q 003270 219 ASCHKLSDAAIRLAATSCPQ------LESLDMSNCSCVSDESLREIAL--SCANLRILNSSYCPNISLESVRLPMLTVLQ 290 (835)
Q Consensus 219 ~~~~~l~~~~l~~~~~~~~~------L~~L~L~~~~~l~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 290 (835)
++|. +.. ..+..+..+++ |++|++++|. +++..+..+.. ..+.++.+.++.+.. ...
T Consensus 182 ~~n~-l~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~-~~~----------- 246 (844)
T 3j0a_A 182 AANS-LYS-RVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIM-GAG----------- 246 (844)
T ss_dssp CCSB-SCC-CCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCC-BCS-----------
T ss_pred CCCc-ccc-ccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccc-ccc-----------
Confidence 7763 331 11222233332 6667776665 44433333321 123455555542210 000
Q ss_pred cCCCCCCChhhHHHhhhc--cCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee---eeccCCCcc
Q 003270 291 LHSCEGITSASMAAISHS--YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALH 365 (835)
Q Consensus 291 l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~---~l~~~~~L~ 365 (835)
... ..+.+.....+..+ ++|++|++++|.+.+..+..+. .+++++.+++++|.++.+ .+..+++|+
T Consensus 247 ~~~-~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 247 FGF-HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--------TLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp SSC-SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--------SCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred ccc-cccCCCChhhhhccccCCccEEECCCCcccccChhhhh--------cCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 000 01222222223322 5666666666665443333222 223333444444444444 466778888
Q ss_pred eeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcce
Q 003270 366 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLV 445 (835)
Q Consensus 366 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 445 (835)
+|++++|.+++..+..+. .+++|++|++++ +.+++..+..+ ..+++|+.|++++|. ++.++.
T Consensus 318 ~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~L~~-N~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~i~~------ 379 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFY-------GLPKVAYIDLQK-NHIAIIQDQTF---KFLEKLQTLDLRDNA-LTTIHF------ 379 (844)
T ss_dssp EEEEESCCCSCCCSCSCS-------SCTTCCEEECCS-CCCCCCCSSCS---CSCCCCCEEEEETCC-SCCCSS------
T ss_pred EEECCCCCCCccCHHHhc-------CCCCCCEEECCC-CCCCccChhhh---cCCCCCCEEECCCCC-CCcccC------
Confidence 888888888765443333 346888888888 47776665555 678888888888875 443321
Q ss_pred EEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc--cccc
Q 003270 446 SLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS--DAYI 523 (835)
Q Consensus 446 ~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~--~~~~ 523 (835)
+++|+.++++++.- .. +|. ....++.+++++|.++ .++ ..+.
T Consensus 380 ----------------~~~L~~L~l~~N~l-~~---l~~--------~~~~l~~L~ls~N~l~--------~l~~~~~~~ 423 (844)
T 3j0a_A 380 ----------------IPSIPDIFLSGNKL-VT---LPK--------INLTANLIHLSENRLE--------NLDILYFLL 423 (844)
T ss_dssp ----------------CCSCSEEEEESCCC-CC---CCC--------CCTTCCEEECCSCCCC--------SSTTHHHHT
T ss_pred ----------------CCCcchhccCCCCc-cc---ccc--------cccccceeecccCccc--------cCchhhhhh
Confidence 44555566555431 11 111 1345666677777663 222 2345
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCc----hhhHhhhhccccceeeecCccccCchH-HHhc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGP----DGLYSLRSLQNLTMLDLSYTFLTNLEP-VFES 598 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~ 598 (835)
.+++|++|++++| .++.......+..+++|+.|++++|..... ..+..+..+++|++|+|++|.++++++ .+..
T Consensus 424 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 424 RVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred cCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 6788888888887 454322222345677888888888875421 113457778888888898888888655 5788
Q ss_pred cccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCc
Q 003270 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMH 667 (835)
Q Consensus 599 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 667 (835)
+++|++|++++|. +++..+..+ .++|+.|++++|++++ ..+.. +.+|+.|++++|+...
T Consensus 503 l~~L~~L~Ls~N~-l~~l~~~~~-----~~~L~~L~Ls~N~l~~-~~~~~---~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 503 LTALRGLSLNSNR-LTVLSHNDL-----PANLEILDISRNQLLA-PNPDV---FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCSCSEEEEESCC-CSSCCCCCC-----CSCCCEEEEEEECCCC-CCSCC---CSSCCEEEEEEECCCC
T ss_pred hhhhheeECCCCC-CCccChhhh-----hccccEEECCCCcCCC-CChhH---hCCcCEEEecCCCccc
Confidence 8888999998887 776554432 2788888998888876 34432 4578888888877554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=331.13 Aligned_cols=486 Identities=16% Similarity=0.127 Sum_probs=314.7
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+....+.+|..+++|++|++++|.+++..+.+|+++++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCS-CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccC-CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 3567777776 455555455666677777777777776666666666777777777777766655555666666666666
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+.. ..++.+++|++|++++| .+....+|..++++++|++|++++|. +++..+..
T Consensus 107 L~~n~l~~l~~----------------~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~ 168 (570)
T 2z63_A 107 AVETNLASLEN----------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD 168 (570)
T ss_dssp CTTSCCCCSTT----------------CSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGG
T ss_pred ccccccccCCC----------------ccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHH
Confidence 66665543320 13566777777777776 34432345667788888888888887 65443333
Q ss_pred HHHhCCCC----cEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc-----ccc
Q 003270 258 IALSCANL----RILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT-----SVS 326 (835)
Q Consensus 258 ~~~~~~~L----~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~ 326 (835)
+. .+++| +.|++++|. .++.......+|++|++.++..-....+..+..+.+++.+.+....+.. .++
T Consensus 169 ~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 169 LR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GH-HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred cc-chhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 33 44555 788888876 3333334444788888887644444556667777777766554322111 111
Q ss_pred c-cCcccceeeccccccccchhhccc-cccee---eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecC
Q 003270 327 L-ELPRLQNIRLVHCRKFADLNLRAM-MLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLT 401 (835)
Q Consensus 327 ~-~~~~L~~L~~~~~~~l~~l~l~~~-~l~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 401 (835)
. .+..+..+. ++.+.+..+ .+... .+..+++|+.+++++|.+++.... ...+ +|++|+++
T Consensus 248 ~~~~~~l~~l~------l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--------~~~~-~L~~L~l~ 312 (570)
T 2z63_A 248 KSALEGLCNLT------IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--------SYNF-GWQHLELV 312 (570)
T ss_dssp TTTTGGGGGSE------EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC--------CSCC-CCSEEEEE
T ss_pred hhhhccccccc------hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh--------hccC-CccEEeec
Confidence 1 111111111 111112111 11110 345667777777777766543111 1133 67777777
Q ss_pred CCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccc
Q 003270 402 DCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASF 481 (835)
Q Consensus 402 ~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~ 481 (835)
+| .++.. |. ..+++|++|++.++......+ ...+++|++++++++. +...+.
T Consensus 313 ~n-~~~~l-~~-----~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~L~~L~l~~n~-l~~~~~ 364 (570)
T 2z63_A 313 NC-KFGQF-PT-----LKLKSLKRLTFTSNKGGNAFS--------------------EVDLPSLEFLDLSRNG-LSFKGC 364 (570)
T ss_dssp SC-BCSSC-CB-----CBCSSCCEEEEESCBSCCBCC--------------------CCBCTTCCEEECCSSC-CBEEEE
T ss_pred cC-ccccc-Cc-----ccccccCEEeCcCCccccccc--------------------cccCCCCCEEeCcCCc-cCcccc
Confidence 73 55421 11 356677777777765211110 0357888888888764 222222
Q ss_pred ccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccC
Q 003270 482 VPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMS 561 (835)
Q Consensus 482 ~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~ 561 (835)
.|.. +..+++|+.+++++|.+. .++..+..+++|++|++++| .+........+..+++|++|++++
T Consensus 365 ~~~~-----~~~~~~L~~L~l~~n~l~--------~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 365 CSQS-----DFGTTSLKYLDLSFNGVI--------TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEHH-----HHTCSCCCEEECCSCSEE--------EEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTT
T ss_pred cccc-----ccccCccCEEECCCCccc--------cccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcC
Confidence 2332 678899999999999884 34445888999999999998 454332234678999999999999
Q ss_pred CCCcCchhhHhhhhccccceeeecCcccc--CchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc
Q 003270 562 CQSIGPDGLYSLRSLQNLTMLDLSYTFLT--NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 562 ~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~ 639 (835)
|..... .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|+ +++..+..+ ..+++|++|++++|+
T Consensus 431 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 431 THTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF---NSLSSLQVLNMASNQ 505 (570)
T ss_dssp SCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSSC
T ss_pred Cccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhh---hcccCCCEEeCCCCc
Confidence 986544 3677899999999999999997 378889999999999999998 887766654 788999999999999
Q ss_pred cchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 640 LCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 640 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
+++ ..+..+..+++|++|++++|+-.
T Consensus 506 l~~-~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 506 LKS-VPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-CCHHHhhcccCCcEEEecCCccc
Confidence 987 45667889999999999999743
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-35 Score=340.35 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=127.3
Q ss_pred eeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEc-CCcccChhhHHh------------
Q 003270 76 RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTL-GRGQLGDAFFHA------------ 142 (835)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~i~~~~~~~------------ 142 (835)
.+|.|+.. .+++.|++++ +.+.+.+|++++.+++|++|++ ++|.+.+..+..
T Consensus 315 ~GV~C~~~--------------~~V~~L~Ls~-~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~ 379 (876)
T 4ecn_A 315 PGVDLDNN--------------GRVTGLSLAG-FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379 (876)
T ss_dssp TTEEECTT--------------SCEEEEECTT-TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHH
T ss_pred CceEecCC--------------CCEEEEECcc-CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhH
Confidence 88888652 3899999999 5788888999999999999999 888766542111
Q ss_pred ----------------------------hc-----------CCCCCCEEEecC--CCCCcccccccccCCcccEEeccCc
Q 003270 143 ----------------------------LA-----------DCSMLKSLNVND--ATLGNGVQEIPINHDQLRRLEITKC 181 (835)
Q Consensus 143 ----------------------------l~-----------~~~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~ 181 (835)
+. ....++.+.+.. |.+++ +|..+.++++|++|++++|
T Consensus 380 l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N 458 (876)
T 4ecn_A 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS 458 (876)
T ss_dssp HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred HHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC
Confidence 00 111233333332 66666 8888999999999999999
Q ss_pred cccc------------------ccc-----CCCCCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 003270 182 RVMR------------------VSI-----RCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAAT 234 (835)
Q Consensus 182 ~~~~------------------~~~-----~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~ 234 (835)
.+.. ++. ++++|++|++++|.+. ..++++++|++|++++|..++...+|..++
T Consensus 459 ~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~ 538 (876)
T 4ecn_A 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538 (876)
T ss_dssp CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH
Confidence 8876 221 3455555555555432 345555555555555552244213444444
Q ss_pred cCC-------CCCEEeCCCCCCCChHHHH--HHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHH
Q 003270 235 SCP-------QLESLDMSNCSCVSDESLR--EIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMA 303 (835)
Q Consensus 235 ~~~-------~L~~L~L~~~~~l~~~~~~--~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 303 (835)
+++ +|++|++++|. ++ ..+. .+. ++++|+.|++++|. .+| .+..+++|++|++++| .+. ..+.
T Consensus 539 ~L~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~-~lp~ 612 (876)
T 4ecn_A 539 RLADDEDTGPKIQIFYMGYNN-LE-EFPASASLQ-KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIE-EIPE 612 (876)
T ss_dssp HHHHCTTTTTTCCEEECCSSC-CC-BCCCHHHHT-TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCS-CCCT
T ss_pred hhhhcccccCCccEEEeeCCc-CC-ccCChhhhh-cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccc-cchH
Confidence 333 55555555555 44 2222 232 45555555555554 333 3444445555555443 333 2333
Q ss_pred HhhhccC-ccEEEccCCC
Q 003270 304 AISHSYM-LEVLELDNCN 320 (835)
Q Consensus 304 ~l~~~~~-L~~L~l~~~~ 320 (835)
.+..+++ |++|++++|.
T Consensus 613 ~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp TSCEECTTCCEEECCSSC
T ss_pred HHhhccccCCEEECcCCC
Confidence 3444444 4444444444
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.3e-34 Score=327.93 Aligned_cols=457 Identities=16% Similarity=0.116 Sum_probs=285.4
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+.+..+.+|..+++|++|++++|.+++..+.+|+.+++|++|++++|.+++..+..+.++++|++|+
T Consensus 26 ~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCS-SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcC-CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 6899999999 567776677899999999999999999998889999999999999999999988888899999999999
Q ss_pred ccCcccccc-----ccCCCCCcEEEecccc-hH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCC
Q 003270 178 ITKCRVMRV-----SIRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 247 (835)
Q Consensus 178 l~~~~~~~~-----~~~l~~L~~L~l~~~~-i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~ 247 (835)
+++|.+..+ ..++++|++|++++|. +. ..+..+++|++|++++| .++. ..+..++++++|++|++++|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRN-YQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCE-ECTTTTTTCSEEEEEEEECS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccc-cChhhhhccccCceEecccC
Confidence 999988643 3578999999999987 33 46788999999999998 4552 34667888999999999999
Q ss_pred CCCChHHHHHHHHhCCCCcEEecCCCC--CC---Cc-cccCCCCCcEEecCCCCCCChhhHHHh----hhccCccEEEcc
Q 003270 248 SCVSDESLREIALSCANLRILNSSYCP--NI---SL-ESVRLPMLTVLQLHSCEGITSASMAAI----SHSYMLEVLELD 317 (835)
Q Consensus 248 ~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l---~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~ 317 (835)
. ++ ..+..+...+++|+.|++++|. .+ +. ....+++|++|++.++ .+.+..+..+ ..+++|+.++++
T Consensus 183 ~-~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 183 E-SA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp B-ST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred c-cc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccc
Confidence 8 55 3445555579999999999986 22 11 2345789999999997 7777666554 456899999999
Q ss_pred CCCcccccc---------ccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHH
Q 003270 318 NCNLLTSVS---------LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL 388 (835)
Q Consensus 318 ~~~~~~~~~---------~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 388 (835)
+|.+.+... ..+++++.+.+.++.--..... ..+.. .....++|+.+++++|.++.... .+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~l~~-~~~~~~~L~~L~l~~n~l~~ip~-------~~ 329 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF--YDLST-VYSLLEKVKRITVENSKVFLVPC-------SF 329 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS--CCCCH-HHHHSTTCCEEEEESSCCCCCCH-------HH
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhc--ccchh-hhhhcccceEEEeccCccccCCH-------HH
Confidence 987654211 1233333333332210000000 00000 01223455555555555542210 01
Q ss_pred HhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEE
Q 003270 389 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKV 468 (835)
Q Consensus 389 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l 468 (835)
...+++|++|++++ +.+++..+......+.+++|++|++++|. ++.++
T Consensus 330 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~------------------------------ 377 (549)
T 2z81_A 330 SQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQ------------------------------ 377 (549)
T ss_dssp HHHCTTCCEEECCS-SCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHH------------------------------
T ss_pred HhcCccccEEEccC-CccccccccchhhhhccccCcEEEccCCc-ccccc------------------------------
Confidence 11345556666655 35555443322222445555555555553 22110
Q ss_pred ecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhh
Q 003270 469 CLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATT 548 (835)
Q Consensus 469 ~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~ 548 (835)
..+. .+..+++|+.+++++|++ ..+|..+..+++|++|++++| .++. ++..+
T Consensus 378 ------------~~~~-----~~~~l~~L~~L~Ls~N~l--------~~lp~~~~~~~~L~~L~Ls~N-~l~~--l~~~~ 429 (549)
T 2z81_A 378 ------------KTGE-----ILLTLKNLTSLDISRNTF--------HPMPDSCQWPEKMRFLNLSST-GIRV--VKTCI 429 (549)
T ss_dssp ------------HHHH-----HGGGCTTCCEEECTTCCC--------CCCCSCCCCCTTCCEEECTTS-CCSC--CCTTS
T ss_pred ------------cchh-----hhhcCCCCCEEECCCCCC--------ccCChhhcccccccEEECCCC-Cccc--ccchh
Confidence 0000 034455555555555555 345555555666666666666 3332 22111
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
.++|++|++++|...+. ...+++|++|++++|+++.+|. ...+++|++|++++|+ +++..+..+ ..++
T Consensus 430 --~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~ 497 (549)
T 2z81_A 430 --PQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQ-LKSVPDGIF---DRLT 497 (549)
T ss_dssp --CTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSC-CCCCCTTGG---GGCT
T ss_pred --cCCceEEECCCCChhhh-----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCc-cCCcCHHHH---hcCc
Confidence 13556666665554332 1345556666666666555554 2345556666666555 554443332 4455
Q ss_pred CccEEeCCCcccch
Q 003270 629 ALQELDLSYGTLCQ 642 (835)
Q Consensus 629 ~L~~L~l~~n~~~~ 642 (835)
+|+.|++++|++..
T Consensus 498 ~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 498 SLQKIWLHTNPWDC 511 (549)
T ss_dssp TCCEEECCSSCBCC
T ss_pred ccCEEEecCCCccC
Confidence 55556665555543
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-34 Score=331.28 Aligned_cols=234 Identities=14% Similarity=0.174 Sum_probs=136.4
Q ss_pred HHHHhhcCCCCc---eeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCccc-----
Q 003270 64 QWRAASAHEDFW---RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQL----- 135 (835)
Q Consensus 64 ~W~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i----- 135 (835)
.|. ...++|.| .+|.|+.. .+|+.|++++ +.+.+.++++++.+++|++|++++|.+
T Consensus 59 ~W~-~~~~~c~w~~~~GV~C~~~--------------~~V~~L~L~~-~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~ 122 (636)
T 4eco_A 59 NWN-FNKELDMWGAQPGVSLNSN--------------GRVTGLSLEG-FGASGRVPDAIGQLTELEVLALGSHGEKVNER 122 (636)
T ss_dssp CCC-CSSCGGGTTCCTTEEECTT--------------CCEEEEECTT-SCCEEEECGGGGGCTTCCEEESCCGGGGGTCC
T ss_pred CCC-CCCCcccccCCCCeEEcCC--------------CCEEEEEecC-cccCCcCChHHhcCccceEEECcCCccccCCc
Confidence 476 45678999 99999644 3799999999 578888889999999999999999965
Q ss_pred -Ch---------------------------hhHHhhc-------------------CCCCCCEEEec--CCCCCcccccc
Q 003270 136 -GD---------------------------AFFHALA-------------------DCSMLKSLNVN--DATLGNGVQEI 166 (835)
Q Consensus 136 -~~---------------------------~~~~~l~-------------------~~~~L~~L~l~--~~~~~~~~~~~ 166 (835)
.+ ..+..+. ....++.+.+. .|.+++ +|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~ 201 (636)
T 4eco_A 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201 (636)
T ss_dssp SBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred cccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH
Confidence 11 1111111 01112222222 456767 8888
Q ss_pred cccCCcccEEeccCccccccccCCCCCcEEEeccc----chHHHhh--cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCC
Q 003270 167 PINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS----NMAQAVL--NCPLLHLLDIASCHKLSDAAIRLAATSCPQLE 240 (835)
Q Consensus 167 ~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~----~i~~~~~--~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~ 240 (835)
++++++|++|++++|.+........ ....... .++..++ ++++|++|++++|. +. +.+|..++++++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~---~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NL-TKLPTFLKALPEMQ 276 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSS---CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TC-SSCCTTTTTCSSCC
T ss_pred HhcccCCCEEECcCCcccccccccc---ccccccchhcccCchhhhhcccCCCCEEEecCCc-CC-ccChHHHhcCCCCC
Confidence 9999999999999998876100000 0000000 0222333 45555555555552 22 13344455555555
Q ss_pred EEeCCCCCCCCh-HHHHHHHHhC------CCCcEEecCCCC--CCCc--cccCCCCCcEEecCCCCCCChhhHHHhhhcc
Q 003270 241 SLDMSNCSCVSD-ESLREIALSC------ANLRILNSSYCP--NISL--ESVRLPMLTVLQLHSCEGITSASMAAISHSY 309 (835)
Q Consensus 241 ~L~L~~~~~l~~-~~~~~~~~~~------~~L~~L~l~~~~--~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 309 (835)
+|++++|..+++ ..|..+. .+ ++|++|++++|. .+|. .++.+++|++|++++| .+.+..+ .++.++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEE
T ss_pred EEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCC
Confidence 555555543444 4444443 32 556666665555 4555 5556666666666665 5554444 566666
Q ss_pred CccEEEccCCCcc
Q 003270 310 MLEVLELDNCNLL 322 (835)
Q Consensus 310 ~L~~L~l~~~~~~ 322 (835)
+|++|++++|.+.
T Consensus 354 ~L~~L~L~~N~l~ 366 (636)
T 4eco_A 354 KLASLNLAYNQIT 366 (636)
T ss_dssp EESEEECCSSEEE
T ss_pred CCCEEECCCCccc
Confidence 7777777766543
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=331.04 Aligned_cols=478 Identities=15% Similarity=0.105 Sum_probs=305.4
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
..+.+++++..++... ...+..++++++|+++++ .+....+.+|..+++|++|++++|.+++..+.+|+++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccC-hhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4456777665443211 124567899999999994 67776677899999999999999999988889999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchH----HHhhcCCCC----cEEeecC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNCPLL----HLLDIAS 220 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~----~~~~~~~~L----~~L~l~~ 220 (835)
+++|.+++..+..++++++|++|++++|.+..+ ..++++|++|++++|.+. ..++.+++| ++|++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 999998765554688999999999999987642 346899999999998775 456666677 7899998
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--------CCCc-cccCCC--CCcEE
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--------NISL-ESVRLP--MLTVL 289 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--------~l~~-~~~~~~--~L~~L 289 (835)
|. +... .+..+.. .+|++|++++|. ............++.++.+.+.... .++. .+..++ .++.+
T Consensus 187 n~-l~~~-~~~~~~~-~~L~~L~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 187 NP-MNFI-QPGAFKE-IRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CC-CCEE-CTTTTTT-CEEEEEEEESCC-SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CC-ceec-CHHHhcc-CcceeEeccccc-ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 83 4421 1233333 479999999886 3333344444477777766553221 0110 111111 23445
Q ss_pred ecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeee
Q 003270 290 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINI 369 (835)
Q Consensus 290 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l 369 (835)
++.++..+.+..+..+..+++|++|++++|.+. .+|.. +..+ +|++|++
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-----------------------------~~~~-~L~~L~l 311 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-----------------------------SYNF-GWQHLEL 311 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-----------------------------CSCC-CCSEEEE
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-----------------------------hccC-CccEEee
Confidence 554443344444555666677777777666543 23322 2233 4445555
Q ss_pred ccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEec
Q 003270 370 TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSL 449 (835)
Q Consensus 370 ~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l 449 (835)
++|.+...... .+++|++|++++| .+.+..+. ..+++|++|++++|. ++....
T Consensus 312 ~~n~~~~l~~~----------~l~~L~~L~l~~n-~~~~~~~~-----~~~~~L~~L~l~~n~-l~~~~~---------- 364 (570)
T 2z63_A 312 VNCKFGQFPTL----------KLKSLKRLTFTSN-KGGNAFSE-----VDLPSLEFLDLSRNG-LSFKGC---------- 364 (570)
T ss_dssp ESCBCSSCCBC----------BCSSCCEEEEESC-BSCCBCCC-----CBCTTCCEEECCSSC-CBEEEE----------
T ss_pred ccCcccccCcc----------cccccCEEeCcCC-cccccccc-----ccCCCCCEEeCcCCc-cCcccc----------
Confidence 55544422110 2345555555552 33322111 345555555555543 221100
Q ss_pred cCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc-cccccCCCc
Q 003270 450 VGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLL 528 (835)
Q Consensus 450 ~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L 528 (835)
.......+++|+.+++++|.-. .+|+. +..+++|+.+++++|.+. +..+ ..+..+++|
T Consensus 365 -----~~~~~~~~~~L~~L~l~~n~l~----~~~~~-----~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L 423 (570)
T 2z63_A 365 -----CSQSDFGTTSLKYLDLSFNGVI----TMSSN-----FLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNL 423 (570)
T ss_dssp -----EEHHHHTCSCCCEEECCSCSEE----EEEEE-----EETCTTCCEEECTTSEEE-------SCTTSCTTTTCTTC
T ss_pred -----ccccccccCccCEEECCCCccc----ccccc-----ccccCCCCEEEccCCccc-------cccchhhhhcCCCC
Confidence 0000112444555555544211 11221 566777888888877774 3333 357788888
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l 607 (835)
++|++++|. +. +..+..+..+++|++|++++|.......+..+..+++|++|++++|.++++ |..+..+++|++|++
T Consensus 424 ~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 424 IYLDISHTH-TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CEEECTTSC-CE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEeCcCCc-cc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 888888883 43 335566778888888888888765333356788888999999999988876 668888899999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
++|+ +++..+..+ ..+++|+.|++++|.++.
T Consensus 502 ~~n~-l~~~~~~~~---~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 502 ASNQ-LKSVPDGIF---DRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSSC-CSCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred CCCc-CCCCCHHHh---hcccCCcEEEecCCcccC
Confidence 9987 877655443 678889999999988765
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.9e-33 Score=322.29 Aligned_cols=531 Identities=16% Similarity=0.090 Sum_probs=289.9
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEec
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 178 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 178 (835)
++++|++++ +.+....+.+|..+++|++|++++|.+++..+.+|+++++|++|++++|++++..+..+.++++|++|++
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 577777777 5666665667777777777777777777766667777777777777777776555556666677777776
Q ss_pred cCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH--
Q 003270 179 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR-- 256 (835)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~-- 256 (835)
++|.+..+.. ..++.+++|++|++++| .++...++..++++++|++|++++|. ++...+.
T Consensus 132 s~N~l~~l~~----------------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l 193 (635)
T 4g8a_A 132 VETNLASLEN----------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 193 (635)
T ss_dssp TTSCCCCSTT----------------CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGG
T ss_pred CCCcCCCCCh----------------hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-ccccccccc
Confidence 6666544321 23566677777777776 34433345566778888888888887 6543322
Q ss_pred -HHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccc
Q 003270 257 -EIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQ 333 (835)
Q Consensus 257 -~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~ 333 (835)
.+.........++++.+. .++........++.+++.++..........+..+..++...+......... .++
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~-----~l~ 268 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-----NLE 268 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC-----CCS
T ss_pred cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc-----ccc
Confidence 222112234567777775 344555555667778877753333344455666777776655432211110 000
Q ss_pred eeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhh
Q 003270 334 NIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV 413 (835)
Q Consensus 334 ~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~ 413 (835)
...... +.....+....+..+...... ............++.+++.+ +.+.... .
T Consensus 269 ~~~~~~------------------~~~~~~l~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~-~~~~~~~--~ 323 (635)
T 4g8a_A 269 KFDKSA------------------LEGLCNLTIEEFRLAYLDYYL----DGIIDLFNCLTNVSSFSLVS-VTIERVK--D 323 (635)
T ss_dssp CCCTTT------------------TGGGGGSEEEEEEEECCCSCE----EECTTTTGGGTTCSEEEEES-CEEEECG--G
T ss_pred cccccc------------------cccccchhhhhhhhhhhcccc----cchhhhhhhhcccccccccc-ccccccc--c
Confidence 000000 011111111111111000000 00000000224555555555 2333221 1
Q ss_pred ccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCc
Q 003270 414 FSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGI 493 (835)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~ 493 (835)
+ .....++.|++.++. +..++. ..+..++.+.+.++.... +. ....
T Consensus 324 ~---~~~~~L~~L~l~~~~-~~~~~~--------------------~~l~~L~~l~l~~n~~~~-----~~-----~~~~ 369 (635)
T 4g8a_A 324 F---SYNFGWQHLELVNCK-FGQFPT--------------------LKLKSLKRLTFTSNKGGN-----AF-----SEVD 369 (635)
T ss_dssp G---GSCCCCSEEEEESCE-ESSCCC--------------------CBCTTCCEEEEESCCSCC-----BC-----CCCB
T ss_pred c---ccchhhhhhhccccc-ccCcCc--------------------ccchhhhhcccccccCCC-----Cc-----cccc
Confidence 1 334456666666553 211100 012233333333321100 00 1334
Q ss_pred CCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 494 ~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
+++|+.++++.|.+... +..+..+..+.+|+.+++..+. .. ..+..+..+++|+.+++.++..........+
T Consensus 370 l~~L~~L~ls~n~l~~~-----~~~~~~~~~~~~L~~L~~~~~~-~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFK-----GCCSQSDFGTISLKYLDLSFNG-VI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CTTCCEEECCSSCCBEE-----EECCHHHHSCSCCCEEECCSCS-EE--EECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred ccccccchhhccccccc-----cccccchhhhhhhhhhhccccc-cc--cccccccccccccchhhhhcccccccccccc
Confidence 56666666666655322 2234445556677777777663 21 2344455667777777776665544434456
Q ss_pred hhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC
Q 003270 574 RSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 652 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~ 652 (835)
..+++++.+++++|.+..+ +..+..++.|+.|++++|.......+.. +..+++|++|++++|++++ ..+..|..+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l 517 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQ-LSPTAFNSL 517 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSCCCE-ECTTTTTTC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCCCccCC-cChHHHcCC
Confidence 6677777777777776653 3356666777777777766333333322 3556667777777776665 345556666
Q ss_pred CCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCcc
Q 003270 653 THLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHL 732 (835)
Q Consensus 653 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L 732 (835)
++|++|++++|. +..+ +
T Consensus 518 ~~L~~L~Ls~N~-l~~l------------------------------------------------------~-------- 534 (635)
T 4g8a_A 518 SSLQVLNMSHNN-FFSL------------------------------------------------------D-------- 534 (635)
T ss_dssp TTCCEEECTTSC-CCBC------------------------------------------------------C--------
T ss_pred CCCCEEECCCCc-CCCC------------------------------------------------------C--------
Confidence 666666666663 1110 0
Q ss_pred ceEeccCCCCccccccccccccEEecccccchhhhhhcCCccceeecccCcCChhHHHHHHhcC-CCcceeecccccCCC
Q 003270 733 SSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQC-GMLETLDVRFCPKIC 811 (835)
Q Consensus 733 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~-~~L~~l~l~~c~~l~ 811 (835)
......+++|++|++++|+|+ ...|..+..+ ++|+.|++++||..|
T Consensus 535 --------------------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 535 --------------------------------TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp --------------------------------CGGGTTCTTCCEEECTTSCCC-BCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred --------------------------------hhHHhCCCCCCEEECCCCcCC-CCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 000123567888888888875 3345667777 589999999999999
Q ss_pred chHHHHHHH
Q 003270 812 STSMGRLRA 820 (835)
Q Consensus 812 ~~~~~~~~~ 820 (835)
+|.+..+.+
T Consensus 582 ~C~~~~~~~ 590 (635)
T 4g8a_A 582 TCEHQSFLQ 590 (635)
T ss_dssp SGGGHHHHH
T ss_pred cCCcHHHHH
Confidence 998777654
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=3.8e-32 Score=312.46 Aligned_cols=449 Identities=14% Similarity=0.139 Sum_probs=269.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCC------c------ccccccccCCcccEEeccCcccccc-c--
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG------N------GVQEIPINHDQLRRLEITKCRVMRV-S-- 187 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~-~-- 187 (835)
.+++.|+++++.+.+.+|.+++++++|++|++++|.+. + .+|... +..|| ++++++.+... .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47899999999999999999999999999999999651 1 111111 12222 22222211100 0
Q ss_pred --------------------cCCCCCcEE-------EecccchHHHhhcCCCCcEEeecCCCCCC---------------
Q 003270 188 --------------------IRCPQLEHL-------SLKRSNMAQAVLNCPLLHLLDIASCHKLS--------------- 225 (835)
Q Consensus 188 --------------------~~l~~L~~L-------~l~~~~i~~~~~~~~~L~~L~l~~~~~l~--------------- 225 (835)
.....++.+ .+.+ ++..++++++|++|++++|.--.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 000000000 2333 34456666666666666654332
Q ss_pred HHHHHHHHh--cCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC-----CCCccccCC------CCCcEEecC
Q 003270 226 DAAIRLAAT--SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-----NISLESVRL------PMLTVLQLH 292 (835)
Q Consensus 226 ~~~l~~~~~--~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-----~l~~~~~~~------~~L~~L~l~ 292 (835)
.+.+|..++ ++++|++|++++|. +.+..|..+. ++++|+.|++++|. .+|..++.+ ++|++|+++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred cccCchhhhhcccCCCCEEEecCCc-CCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 122566777 99999999999998 6767777676 89999999999997 466666665 999999999
Q ss_pred CCCCCChhhHH--HhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee--eeccCCC-ccee
Q 003270 293 SCEGITSASMA--AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI--MVSNCAA-LHRI 367 (835)
Q Consensus 293 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~--~l~~~~~-L~~L 367 (835)
+| .+. ..+. .++.+++|++|++++|.+.+.+| .+..+ ++|+.+++++|.++.+ .+..+++ |++|
T Consensus 314 ~n-~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l--------~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 314 YN-NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE--------IKLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp SS-CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE--------EEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred CC-cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC--------CCCCEEECCCCccccccHhhhhhcccCcEE
Confidence 97 677 5655 89999999999999999887777 44322 2333444445544433 3555666 6666
Q ss_pred eeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCC----CCCCCccEEEecCCCCCccccccCCc
Q 003270 368 NITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG----GGCPMLKSLVLDNCEGLTVVRFCSTS 443 (835)
Q Consensus 368 ~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~ 443 (835)
++++|.++.. +...... .+++|++|++++ +.+++..|..+... ..+++|++|++++|. ++.+
T Consensus 383 ~Ls~N~l~~l-p~~~~~~-----~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l------ 448 (636)
T 4eco_A 383 SFAHNKLKYI-PNIFDAK-----SVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF------ 448 (636)
T ss_dssp ECCSSCCSSC-CSCCCTT-----CSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC------
T ss_pred EccCCcCccc-chhhhhc-----ccCccCEEECcC-CcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcC------
Confidence 6666666532 1111111 123566666666 46665555444210 034455666655553 2211
Q ss_pred ceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccc--
Q 003270 444 LVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA-- 521 (835)
Q Consensus 444 l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~-- 521 (835)
|..+ +..+++|+.|++++|.++ .+|..
T Consensus 449 ---------------------------------------p~~~----~~~l~~L~~L~Ls~N~l~--------~i~~~~~ 477 (636)
T 4eco_A 449 ---------------------------------------PKEL----FSTGSPLSSINLMGNMLT--------EIPKNSL 477 (636)
T ss_dssp ---------------------------------------CTHH----HHTTCCCSEEECCSSCCS--------BCCSSSS
T ss_pred ---------------------------------------CHHH----HccCCCCCEEECCCCCCC--------CcCHHHh
Confidence 1111 233455555555555552 22221
Q ss_pred ------cccCCCcceEecccCCCCccchhhhhhh--cCCCccEEeccCCCCcCchhhHhhhhccccceeeec------Cc
Q 003270 522 ------YINCPLLTSLDASFCSQLKDDCLSATTT--SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLS------YT 587 (835)
Q Consensus 522 ------~~~~~~L~~L~ls~~~~l~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls------~~ 587 (835)
+.++++|++|++++| .++ .++..+. .+++|+.|++++|+..+ .+..+..+++|++|+++ +|
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFN-KLT--KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp EETTEECTTGGGCCEEECCSS-CCC--BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred ccccccccccCCccEEECcCC-cCC--ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccC
Confidence 222336777777776 454 3555554 67777777777776554 25566677777777774 45
Q ss_pred cccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchH----HHHHHHhhCCCc---cEEE
Q 003270 588 FLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS----AIEELLAYCTHL---THVS 659 (835)
Q Consensus 588 ~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~----~~~~~l~~~~~L---~~L~ 659 (835)
++.+ +|..+..+++|++|++++|+ ++.. +..+ .++|+.|++++|++... ..+........+ +..+
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~i-p~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 625 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSND-IRKV-NEKI-----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSC-CCBC-CSCC-----CTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSE
T ss_pred cccccChHHHhcCCCCCEEECCCCc-CCcc-CHhH-----hCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccc
Confidence 5553 66677778888888888877 6433 3322 36788888888855431 234443333222 3345
Q ss_pred ccCCCCC
Q 003270 660 LNGCGNM 666 (835)
Q Consensus 660 l~~~~~~ 666 (835)
+.+|+.+
T Consensus 626 i~~C~~L 632 (636)
T 4eco_A 626 IRGCDAL 632 (636)
T ss_dssp EESCGGG
T ss_pred cCCCccc
Confidence 6667644
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=6e-32 Score=305.43 Aligned_cols=463 Identities=13% Similarity=0.101 Sum_probs=235.8
Q ss_pred eEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccC
Q 003270 101 TEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK 180 (835)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 180 (835)
+++++++ +.+.. +|..+. ++|++|++++|.+.+..+.+|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 3 ~~l~ls~-n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSK-NGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTT-SCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCC-CCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 4566776 34543 333333 6788888888888777777788888888888888887776677777777788888777
Q ss_pred cccccccc-CCCCCcEEEecccchH-----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCC--CEEeCCCCCCC--
Q 003270 181 CRVMRVSI-RCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL--ESLDMSNCSCV-- 250 (835)
Q Consensus 181 ~~~~~~~~-~l~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L--~~L~L~~~~~l-- 250 (835)
|.+..+.. .+++|++|++++|.+. ..++.+++|++|++++| .++. ..+..+++| ++|++++|. +
T Consensus 79 N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~----~~~~~l~~L~L~~L~l~~n~-l~~ 152 (520)
T 2z7x_B 79 NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK----SSVLPIAHLNISKVLLVLGE-TYG 152 (520)
T ss_dssp SCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG----GGGGGGTTSCEEEEEEEECT-TTT
T ss_pred CceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch----hhccccccceeeEEEeeccc-ccc
Confidence 77665432 3455555555555432 24455555555555554 2432 123444444 555555554 3
Q ss_pred ChHHHHHHHHhCC-CCcEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccC
Q 003270 251 SDESLREIALSCA-NLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL 329 (835)
Q Consensus 251 ~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 329 (835)
.+..+..+. .+. ....+++++|. .........+..+++|+.+++++|.....
T Consensus 153 ~~~~~~~l~-~l~~~~l~l~l~~n~---------------------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----- 205 (520)
T 2z7x_B 153 EKEDPEGLQ-DFNTESLHIVFPTNK---------------------EFHFILDVSVKTVANLELSNIKCVLEDNK----- 205 (520)
T ss_dssp SSCCTTTTT-TCCEEEEEEECCSSS---------------------CCCCCCCCCCTTCSEEEECCEEECCSTTT-----
T ss_pred ccccccccc-ccccceEEEEeccCc---------------------chhhhhhhhhhcccceeeccccccccccc-----
Confidence 111111111 110 01122222221 00000011122233333333333220000
Q ss_pred cccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchh
Q 003270 330 PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 409 (835)
Q Consensus 330 ~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 409 (835)
|. .+.+. +. .+..+++|+.++++++.+++..+....... .+++|++|++++ +.+++.
T Consensus 206 ----------~~-----~~~~~-~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~----~~~~L~~L~l~~-n~l~~~ 262 (520)
T 2z7x_B 206 ----------CS-----YFLSI-LA--KLQTNPKLSNLTLNNIETTWNSFIRILQLV----WHTTVWYFSISN-VKLQGQ 262 (520)
T ss_dssp ----------TH-----HHHHH-HH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH----HTSSCSEEEEEE-EEEESC
T ss_pred ----------cc-----eeecc-hh--hhccccchhhccccccccCHHHHHHHHHHh----hhCcccEEEeec-ccccCc
Confidence 00 00000 00 245566666666666666654322211110 235777777777 466655
Q ss_pred hhhhccCC--CCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccccccccc
Q 003270 410 VCEVFSDG--GGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQ 487 (835)
Q Consensus 410 ~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~ 487 (835)
.|..+... ..+++|+.++++++. + .++.. .+..+ ....+++.++++++.-.. ...
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~-------------~~~~~-~~~~~L~~L~l~~n~l~~-~~~------ 319 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQS-------------YIYEI-FSNMNIKNFTVSGTRMVH-MLC------ 319 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTH-------------HHHHH-HHTCCCSEEEEESSCCCC-CCC------
T ss_pred cccchhhcccccCceeEeccccccc-e-ecchh-------------hhhcc-cccCceeEEEcCCCcccc-ccc------
Confidence 44433111 456667777776654 2 22100 00000 011345555555543111 000
Q ss_pred ccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCcc-chhhhhhhcCCCccEEeccCCCCcC
Q 003270 488 SLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQSIG 566 (835)
Q Consensus 488 ~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~ 566 (835)
...+++|+.+++++|.++ +.+|..+..+++|++|++++| .+++ ..++..+..+++|++|++++|...+
T Consensus 320 ---~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 320 ---PSKISPFLHLDFSNNLLT-------DTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp ---CSSCCCCCEEECCSSCCC-------TTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred ---hhhCCcccEEEeECCccC-------hhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 145566666666666664 445666666777777777776 3432 1344556667777777777766554
Q ss_pred chhhHhhhhccccceeeecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHH
Q 003270 567 PDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAI 645 (835)
Q Consensus 567 ~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 645 (835)
......+..+++|++|++++|.+++ +|..+. ++|++|++++|. ++.. +..+ ..+++|++|++++|+++. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~i-p~~~---~~l~~L~~L~L~~N~l~~--l 459 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSI-PKQV---VKLEALQELNVASNQLKS--V 459 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCC-CGGG---GGCTTCCEEECCSSCCCC--C
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-cccc-chhh---hcCCCCCEEECCCCcCCc--c
Confidence 3322335566677777777776654 222221 567777777766 5532 2222 356677777777776664 3
Q ss_pred HH-HHhhCCCccEEEccCCCCC
Q 003270 646 EE-LLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 646 ~~-~l~~~~~L~~L~l~~~~~~ 666 (835)
+. .+..+++|++|++++|+-.
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccCCcccEEECcCCCCc
Confidence 33 3566677777777776643
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.5e-32 Score=314.62 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=130.7
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEe-cCCCCCccccccc----------------------------------
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNV-NDATLGNGVQEIP---------------------------------- 167 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~---------------------------------- 167 (835)
.+++.|+|+++.+.+.+|.+++++++|++|++ ++|.+.+..+-..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 8886655422110
Q ss_pred -----------------ccCCcccEEeccC--cccccc---ccCCCCCcEEEecccchHH--------------------
Q 003270 168 -----------------INHDQLRRLEITK--CRVMRV---SIRCPQLEHLSLKRSNMAQ-------------------- 205 (835)
Q Consensus 168 -----------------~~l~~L~~L~l~~--~~~~~~---~~~l~~L~~L~l~~~~i~~-------------------- 205 (835)
.....++.+.+.. |.+..+ ..++++|++|++++|.+..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0111222222222 333333 3478999999999987654
Q ss_pred -Hhh--cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCCh-HHHHHHHHhCC-------CCcEEecCCCC
Q 003270 206 -AVL--NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD-ESLREIALSCA-------NLRILNSSYCP 274 (835)
Q Consensus 206 -~~~--~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~~~-------~L~~L~l~~~~ 274 (835)
.++ .+++|++|++++|. +. +.+|..++++++|++|++++|..+++ ..|..+. .++ +|+.|++++|.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~-l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCP-NM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCT-TC-CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSC
T ss_pred hhhhhccCCCCCEEECcCCC-CC-ccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCc
Confidence 233 78899999999884 33 25677888999999999999975676 6666665 443 77777777775
Q ss_pred --CCCc--cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcc
Q 003270 275 --NISL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 322 (835)
Q Consensus 275 --~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 322 (835)
.+|. .+..+++|++|++++| .+. ..+ .++.+++|++|++++|.+.
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N-~l~-~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHN-KVR-HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTS-CCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred CCccCChhhhhcCCCCCEEECCCC-Ccc-cch-hhcCCCcceEEECcCCccc
Confidence 4555 5556666666666665 444 222 5555566666666665543
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=301.90 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=51.1
Q ss_pred ccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHH-HhcCCCcceeecccccCCCchHHHHH
Q 003270 751 FNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESA-ITQCGMLETLDVRFCPKICSTSMGRL 818 (835)
Q Consensus 751 ~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~-~~~~~~L~~l~l~~c~~l~~~~~~~~ 818 (835)
++|+.|++++|. ++.+|. .+++|++|++++|+++ .+|.. +..+++|++|++++||..|++.+..+
T Consensus 421 ~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 421 PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCC--ccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 466666776663 445552 5789999999999986 56654 88999999999999999999887776
No 22
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=2.1e-30 Score=298.47 Aligned_cols=492 Identities=19% Similarity=0.230 Sum_probs=289.7
Q ss_pred HHhhhc-cccchhhhHHHHHHHHhhcCCCCceeeccCCCC-CCHHHHHHHHhcCCCeeEEEccCCcchh-----------
Q 003270 46 KQKIWK-SGWILQMTYCIWQWRAASAHEDFWRCLNFENRK-ISVEQFEDVCQRYPNATEVNIYGAPAIH----------- 112 (835)
Q Consensus 46 ~~~~~~-~~~~~~~~~v~~~W~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~----------- 112 (835)
++..+. .....+++.|||+|+++. ...|..+++.... ... ...+++++++++|++++++.+.
T Consensus 17 If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 91 (594)
T 2p1m_B 17 VFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG 91 (594)
T ss_dssp HHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCC
T ss_pred HHhhcCCchhHHHHHHHHHHHHHhh--hhhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccccccccc
Confidence 334444 334567788999999873 4456777776532 222 3567899999999999965432
Q ss_pred ---hHHHHHHhhCCcCcEEEcCCcccChhhHHhhc-CCCCCCEEEecCCC-CCc-ccccccccCCcccEEeccCcccccc
Q 003270 113 ---LLVMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDAT-LGN-GVQEIPINHDQLRRLEITKCRVMRV 186 (835)
Q Consensus 113 ---~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 186 (835)
.++......+++|++|++++|.+++..+..+. .+++|++|++++|. +++ .++....++++|++|++++|.+...
T Consensus 92 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 92 YVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred hhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 23455567889999999999999988887776 68999999999883 432 2555566677777777777765431
Q ss_pred ccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCC-CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC
Q 003270 187 SIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCH-KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL 265 (835)
Q Consensus 187 ~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~-~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L 265 (835)
. ...+......+++|++|++++|. .+.+..+...+.++++|++|++++|..+++ +..+...+++|
T Consensus 172 ~------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L 237 (594)
T 2p1m_B 172 S------------GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQL 237 (594)
T ss_dssp C------------GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTC
T ss_pred c------------hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcc
Confidence 1 00122233456677777777764 355566666667778888888887753332 44444477777
Q ss_pred cEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEE-ccCCCccccccccCcccceeecccccccc
Q 003270 266 RILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLE-LDNCNLLTSVSLELPRLQNIRLVHCRKFA 344 (835)
Q Consensus 266 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~L~~L~~~~~~~l~ 344 (835)
++|+++.+.. .+..+ .+. ..+..+.++++|+.|. +.+.. .+.++.
T Consensus 238 ~~L~l~~~~~--------------~~~~~-~~~-~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~----------------- 283 (594)
T 2p1m_B 238 EELGTGGYTA--------------EVRPD-VYS-GLSVALSGCKELRCLSGFWDAV-PAYLPA----------------- 283 (594)
T ss_dssp SEEECSBCCC--------------CCCHH-HHH-HHHHHHHTCTTCCEEECCBTCC-GGGGGG-----------------
T ss_pred eEcccccccC--------------ccchh-hHH-HHHHHHhcCCCcccccCCcccc-hhhHHH-----------------
Confidence 7777765531 00000 111 1223444555555551 21110 000000
Q ss_pred chhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCcc
Q 003270 345 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLK 424 (835)
Q Consensus 345 ~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~ 424 (835)
.+..+++|++|++++|.+++ ..+..+...+++|++|++++| +++.....+. ..+++|+
T Consensus 284 ------------~~~~~~~L~~L~L~~~~l~~------~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~--~~~~~L~ 341 (594)
T 2p1m_B 284 ------------VYSVCSRLTTLNLSYATVQS------YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA--STCKDLR 341 (594)
T ss_dssp ------------GHHHHTTCCEEECTTCCCCH------HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH--HHCTTCC
T ss_pred ------------HHHhhCCCCEEEccCCCCCH------HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH--HhCCCCC
Confidence 01234444445454444332 112222334555555555553 3333222221 2355555
Q ss_pred EEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccccccc
Q 003270 425 SLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 504 (835)
Q Consensus 425 ~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~ 504 (835)
+|++.+|..... .+|..+.+.+ +..+ ...|++|+.+.+..
T Consensus 342 ~L~L~~~~~~g~----------------------------------~~~~~l~~~~-----l~~l-~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 342 ELRVFPSEPFVM----------------------------------EPNVALTEQG-----LVSV-SMGCPKLESVLYFC 381 (594)
T ss_dssp EEEEECSCTTCS----------------------------------SCSSCCCHHH-----HHHH-HHHCTTCCEEEEEE
T ss_pred EEEEecCccccc----------------------------------ccCCCCCHHH-----HHHH-HHhchhHHHHHHhc
Confidence 555544320000 0000000000 0000 11233344433333
Q ss_pred ceeEEEeecCCccccccc-ccCCCcceEecc-----cCCCCc----cchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 505 LHMVVLELKGCGVLSDAY-INCPLLTSLDAS-----FCSQLK----DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 505 ~~l~~l~~~~~~~l~~~~-~~~~~L~~L~ls-----~~~~l~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
+.++ +.....+ ..+++|++|+++ +|..++ +.+++..+..+++|++|++++ .+.+.++..+.
T Consensus 382 ~~l~-------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~ 452 (594)
T 2p1m_B 382 RQMT-------NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG 452 (594)
T ss_dssp SCCC-------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH
T ss_pred CCcC-------HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH
Confidence 3321 1111122 357788888888 455676 556777788999999999977 46666677776
Q ss_pred h-ccccceeeecCccccC--chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhh
Q 003270 575 S-LQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY 651 (835)
Q Consensus 575 ~-l~~L~~L~Ls~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 651 (835)
. +++|+.|++++|.+++ +......+++|++|++++|+ +++..+..+ ...+++|+.|++++|+++..++......
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLAN--ASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHT--GGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHH--HHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 6 8999999999999875 33344779999999999999 676666544 2458899999999999987666665578
Q ss_pred CCCccEEEccCCC
Q 003270 652 CTHLTHVSLNGCG 664 (835)
Q Consensus 652 ~~~L~~L~l~~~~ 664 (835)
+++|+...+..+.
T Consensus 530 lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 530 MPKLNVEVIDERG 542 (594)
T ss_dssp CTTEEEEEECSSS
T ss_pred CCCCEEEEecCCC
Confidence 8998877776554
No 23
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.5e-30 Score=299.28 Aligned_cols=244 Identities=14% Similarity=0.159 Sum_probs=156.1
Q ss_pred cchhhhHHHHHHHHhhcCCCCceeeccCC-CCCCHHHHHHHHhcCCCeeEEEccCCcchh--------------hHHHHH
Q 003270 54 WILQMTYCIWQWRAASAHEDFWRCLNFEN-RKISVEQFEDVCQRYPNATEVNIYGAPAIH--------------LLVMKA 118 (835)
Q Consensus 54 ~~~~~~~v~~~W~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--------------~~~~~~ 118 (835)
...+++.|||+|+.+.. ..|..+...+ .... ....+++++++++|++++++.+. .++...
T Consensus 33 d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l 107 (592)
T 3ogk_B 33 DRDSASLVCRRWFKIDS--ETREHVTMALCYTAT---PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI 107 (592)
T ss_dssp HHHHHTTSCHHHHHHHH--HHCCEEEESCGGGSC---HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred HHHHHHHHhHHHHHhhh--ccccEEEEeeccccC---hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHH
Confidence 35566889999998742 2233444333 1222 24667889999999998865433 234455
Q ss_pred HhhCCcCcEEEcCCcccChhhHHhhcC-CCC-CCEEEecCCCC-C-cccccccccCCcccEEeccCccccccccCCCCCc
Q 003270 119 VSLLRNLEALTLGRGQLGDAFFHALAD-CSM-LKSLNVNDATL-G-NGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLE 194 (835)
Q Consensus 119 l~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~-L~~L~l~~~~~-~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~ 194 (835)
...+++|++|++++|.+++..+..+.. ++. |++|++++|.. + ..++....++++|++|++++|.+....
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~------- 180 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD------- 180 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC-------
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc-------
Confidence 557888889998888888877777665 444 88888888751 1 123333344555555555555432110
Q ss_pred EEEecccchHHHhhcCCCCcEEeecCCCCCC---HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 195 HLSLKRSNMAQAVLNCPLLHLLDIASCHKLS---DAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 195 ~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~---~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
...+...+..+++|++|++++|. ++ ...++..+.++++|++|++++|. +.+ .+..+ ..+++|++|+++
T Consensus 181 -----~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-l~~~~-~~~~~L~~L~l~ 251 (592)
T 3ogk_B 181 -----GKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILE-LVGFF-KAAANLEEFCGG 251 (592)
T ss_dssp -----SHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG-GHHHH-HHCTTCCEEEEC
T ss_pred -----hhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHH-HHHHH-hhhhHHHhhccc
Confidence 00144566788889999998873 43 56788888899999999999987 554 33444 488999999998
Q ss_pred CCC------CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCC
Q 003270 272 YCP------NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 272 ~~~------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 320 (835)
... .....+..+++|+.|.+.++ .....+..+..+++|++|++++|.
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCC
T ss_pred ccccccchHHHHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCc
Confidence 543 22234556777777777663 223334445566677777777665
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.8e-30 Score=295.64 Aligned_cols=428 Identities=15% Similarity=0.114 Sum_probs=219.2
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc-CCCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~L~~L~l~~~ 201 (835)
++|++|++++|.+++..+.+|+.+++|++|++++|.+++..|..+.++++|++|++++|.+..+.. .+++|++|++++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N 131 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN 131 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 455555555555555444555555555555555555554444455555555555555555544322 3555555555555
Q ss_pred chH-----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCC--CEEeCCCCCCC--ChHHHHHHHHhCC-CCcEEecC
Q 003270 202 NMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL--ESLDMSNCSCV--SDESLREIALSCA-NLRILNSS 271 (835)
Q Consensus 202 ~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L--~~L~L~~~~~l--~~~~~~~~~~~~~-~L~~L~l~ 271 (835)
.+. ..++.+++|++|++++| .++.. .+..+++| ++|++++|. + ++..+..+. .+. ..-.++++
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~L~L~~L~L~~n~-l~~~~~~~~~l~-~l~~~~l~l~l~ 204 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAA-KFRQL----DLLPVAHLHLSCILLDLVS-YHIKGGETESLQ-IPNTTVLHLVFH 204 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECS-BCCTT----TTGGGTTSCEEEEEEEESS-CCCCSSSCCEEE-ECCEEEEEEEEC
T ss_pred CccccCchHhhcccCcccEEecCCC-ccccC----chhhhhhceeeEEEeeccc-ccccccCccccc-ccCcceEEEEec
Confidence 443 24555566666666655 34321 23334444 666666555 3 222111111 111 00123333
Q ss_pred CCC---CCCc-cccCCCCCcEEecCCCCCC---ChhhHHHhhhccCccEEEccCCCcccccccc------Ccccceeecc
Q 003270 272 YCP---NISL-ESVRLPMLTVLQLHSCEGI---TSASMAAISHSYMLEVLELDNCNLLTSVSLE------LPRLQNIRLV 338 (835)
Q Consensus 272 ~~~---~l~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------~~~L~~L~~~ 338 (835)
+|. .++. .+..+++|+.++++++... .......+..+++|+++++.++...+..... .++++.|.+.
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 333 1111 2234555555655553100 0112233444555555555544432211110 1133333322
Q ss_pred ccccccchhhcccccce-e--ee-----ccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhh
Q 003270 339 HCRKFADLNLRAMMLSS-I--MV-----SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSV 410 (835)
Q Consensus 339 ~~~~l~~l~l~~~~l~~-~--~l-----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~ 410 (835)
+ +.+++ + .+ ..++.|+.+++..+.+ . .+. ..+..+. ...+|++|++++| .+....
T Consensus 285 ~-----------n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~--~p~-~~~~~~~-~~~~L~~L~l~~n-~~~~~~ 347 (562)
T 3a79_B 285 N-----------LTITERIDREEFTYSETALKSLMIEHVKNQVF-L--FSK-EALYSVF-AEMNIKMLSISDT-PFIHMV 347 (562)
T ss_dssp E-----------EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-S--SCH-HHHHHHH-HTCCCSEEEEESS-CCCCCC
T ss_pred c-----------cEeeccccchhhhcccccchheehhhccccee-e--cCh-hhhhhhh-ccCcceEEEccCC-Cccccc
Confidence 2 22211 0 01 3344444444444444 1 110 1111111 2357888888884 554321
Q ss_pred hhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccc
Q 003270 411 CEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLN 490 (835)
Q Consensus 411 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~ 490 (835)
+ ...+++|++|+++++. ++.. .|..
T Consensus 348 ---~--~~~l~~L~~L~l~~n~-l~~~--------------------------------------------~~~~----- 372 (562)
T 3a79_B 348 ---C--PPSPSSFTFLNFTQNV-FTDS--------------------------------------------VFQG----- 372 (562)
T ss_dssp ---C--CSSCCCCCEEECCSSC-CCTT--------------------------------------------TTTT-----
T ss_pred ---C--ccCCCCceEEECCCCc-cccc--------------------------------------------hhhh-----
Confidence 1 1467788888888775 3211 1111
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++|+.+++++|+++.+ ..+|..+..+++|++|++++| .++.......+..+++|++|++++|...+.. +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~-----~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 445 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNF-----FKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSV-F 445 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBT-----THHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-G
T ss_pred hcccCCCCEEECCCCCcCCc-----ccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcch-h
Confidence 45556666666666665310 234456777788888888887 3433222234567788888888888754322 2
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
..+. ++|++|++++|+++.+|..+..+++|++|++++|+ ++...... +..+++|+.|++++|++..
T Consensus 446 ~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~---~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGV---FDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTS---TTTCTTCCCEECCSCCBCC
T ss_pred hhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHH---HhcCCCCCEEEecCCCcCC
Confidence 2222 68888888888888888876788889999998887 77543332 3678888888888888764
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=9.3e-30 Score=289.74 Aligned_cols=464 Identities=14% Similarity=0.087 Sum_probs=290.6
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccc----ccCCCCCcEE
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV----SIRCPQLEHL 196 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L 196 (835)
.+...++++++++.+++ +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+..+ ..++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34455899999999885 666553 8999999999999887778899999999999999988765 2357888888
Q ss_pred EecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC--cEEecCC
Q 003270 197 SLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL--RILNSSY 272 (835)
Q Consensus 197 ~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L--~~L~l~~ 272 (835)
++++|.+. ... .+++|++|++++| .++...+|..++++++|++|++++|. ++...+. .+++| +.|++++
T Consensus 106 ~Ls~N~l~~lp~~-~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~----~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQNISCC-PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLL----PVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCCEECSC-CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTG----GGTTSCEEEEEEEE
T ss_pred ECCCCcCCccCcc-ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-cccCchh----hhhhceeeEEEeec
Confidence 88888776 111 6778888888887 45532334567777888888888877 5542222 33444 6666666
Q ss_pred CCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhcc-CccEEEccCCCcccccccc----Ccccceeecccccc-ccch
Q 003270 273 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSY-MLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRK-FADL 346 (835)
Q Consensus 273 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~L~~L~~~~~~~-l~~l 346 (835)
|... ..+..+..+..+. ..-++++++|.+.+.++.. +++++.+++.+... .+.
T Consensus 179 n~l~--------------------~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~- 237 (562)
T 3a79_B 179 VSYH--------------------IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR- 237 (562)
T ss_dssp SSCC--------------------CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH-
T ss_pred cccc--------------------ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch-
Confidence 5310 0122222222211 0113344444433322211 12222222221100 000
Q ss_pred hhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEE
Q 003270 347 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 426 (835)
Q Consensus 347 ~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L 426 (835)
+.+ .+. .+...+.++.+++..+.+++..+..... .. ..++|++|++++ +.+++..|..+... ..++|+.|
T Consensus 238 -l~~-~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~---~~-~~~~L~~L~l~~-n~l~~~ip~~~~~~-~~~~L~~L 307 (562)
T 3a79_B 238 -LMT-FLS--ELTRGPTLLNVTLQHIETTWKCSVKLFQ---FF-WPRPVEYLNIYN-LTITERIDREEFTY-SETALKSL 307 (562)
T ss_dssp -HHH-HHH--HHHSCSSCEEEEEEEEEECHHHHHHHHH---HH-TTSSEEEEEEEE-EEECSCCCCCCCCC-CSCSCCEE
T ss_pred -HHH-HHH--HHhccCcceEEEecCCcCcHHHHHHHHH---hh-hcccccEEEEec-cEeeccccchhhhc-ccccchhe
Confidence 000 000 3566777788888777776643222211 11 335899999988 47776555443111 12344444
Q ss_pred EecCCCC--CccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccccccc
Q 003270 427 VLDNCEG--LTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 504 (835)
Q Consensus 427 ~l~~~~~--l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~ 504 (835)
.+.++.. + .++. ..+..+ ....+++.++++++.-.. .. ....+++|+.+++++
T Consensus 308 ~~~~~~~~~~-~~p~-------------~~~~~~-~~~~~L~~L~l~~n~~~~------~~----~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 308 MIEHVKNQVF-LFSK-------------EALYSV-FAEMNIKMLSISDTPFIH------MV----CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEEECCC-SSCH-------------HHHHHH-HHTCCCSEEEEESSCCCC------CC----CCSSCCCCCEEECCS
T ss_pred ehhhccccee-ecCh-------------hhhhhh-hccCcceEEEccCCCccc------cc----CccCCCCceEEECCC
Confidence 4433220 1 1110 000000 123567788887764211 10 026788999999999
Q ss_pred ceeEEEeecCCcccccccccCCCcceEecccCCCCccc-hhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceee
Q 003270 505 LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDD-CLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLD 583 (835)
Q Consensus 505 ~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 583 (835)
|.++ +.+|..+..+++|++|++++| .++.- .++..+..+++|++|++++|...+......+..+++|++|+
T Consensus 363 n~l~-------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 363 NVFT-------DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp SCCC-------TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred Cccc-------cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 9986 678888999999999999998 56542 34566889999999999999976534344578899999999
Q ss_pred ecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH-HhhCCCccEEEcc
Q 003270 584 LSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL-LAYCTHLTHVSLN 661 (835)
Q Consensus 584 Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~-l~~~~~L~~L~l~ 661 (835)
+++|.+++ ++..+. ++|++|++++|. ++.. +..+ ..+++|++|++++|+++. +|.. +..+++|++|+++
T Consensus 435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~i-p~~~---~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSI-PKDV---THLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCC-CTTT---TSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECC
T ss_pred CCCCCCCcchhhhhc--CcCCEEECCCCc-Cccc-Chhh---cCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEec
Confidence 99999975 333222 699999999997 8743 3332 578999999999999985 4544 8889999999999
Q ss_pred CCCCCc
Q 003270 662 GCGNMH 667 (835)
Q Consensus 662 ~~~~~~ 667 (835)
+|+-..
T Consensus 506 ~N~~~c 511 (562)
T 3a79_B 506 DNPWDC 511 (562)
T ss_dssp SCCBCC
T ss_pred CCCcCC
Confidence 998543
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.3e-28 Score=286.13 Aligned_cols=499 Identities=16% Similarity=0.119 Sum_probs=308.0
Q ss_pred ceeeccCCCCCCHHHH-HHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 75 WRCLNFENRKISVEQF-EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 75 ~~~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
-+.++++...++. + ...++.++++++|++++ +.+....+.+|..+++|++|+|++|.+++..+.+|+++++|++|+
T Consensus 54 ~~~LdLs~N~i~~--l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 54 TKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CCEEECTTSCCCE--ECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCEEEeeCCCCCC--CCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3455555433321 1 13467889999999999 578877677899999999999999999988888999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchH----HHhhcCCC----CcEEeecC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNCPL----LHLLDIAS 220 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~----~~~~~~~~----L~~L~l~~ 220 (835)
+++|.+++..+..++++++|++|++++|.+..+ ...+++|++|++++|.+. ..+..+.+ ...++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999876666789999999999999987543 346889999999998775 23333322 34677777
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCC-----CC----ccccCCCCCcEEec
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN-----IS----LESVRLPMLTVLQL 291 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-----l~----~~~~~~~~L~~L~l 291 (835)
| .+. .++........++.+++.++. ............+..++...+..... +. ..+.....+....+
T Consensus 211 n-~l~--~i~~~~~~~~~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 211 N-PMN--FIQPGAFKEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp C-CCC--EECTTTTTTCEEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred C-ccc--ccCcccccchhhhhhhhhccc-ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 6 344 122233344566778888776 44444444444777776665543210 00 00111112222211
Q ss_pred CCC--CCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee-eeccCCCcceee
Q 003270 292 HSC--EGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRIN 368 (835)
Q Consensus 292 ~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~-~l~~~~~L~~L~ 368 (835)
... ..........+....+++.+++.++. +..+ .+..+..++.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--------------------------------~~~~~~~~~~~~L~~L~ 334 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT--------------------------------IERVKDFSYNFGWQHLE 334 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCE--------------------------------EEECGGGGSCCCCSEEE
T ss_pred hhhhhcccccchhhhhhhhcccccccccccc--------------------------------cccccccccchhhhhhh
Confidence 110 00000111112222333333333322 1111 234455666666
Q ss_pred eccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEe
Q 003270 369 ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLS 448 (835)
Q Consensus 369 l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~ 448 (835)
+.++.+.+.... .++.|+.+++.+ +.+.... ....+++|+.++++++. +.....
T Consensus 335 l~~~~~~~~~~~----------~l~~L~~l~l~~-n~~~~~~-----~~~~l~~L~~L~ls~n~-l~~~~~--------- 388 (635)
T 4g8a_A 335 LVNCKFGQFPTL----------KLKSLKRLTFTS-NKGGNAF-----SEVDLPSLEFLDLSRNG-LSFKGC--------- 388 (635)
T ss_dssp EESCEESSCCCC----------BCTTCCEEEEES-CCSCCBC-----CCCBCTTCCEEECCSSC-CBEEEE---------
T ss_pred cccccccCcCcc----------cchhhhhccccc-ccCCCCc-----ccccccccccchhhccc-cccccc---------
Confidence 666666554322 235666666666 3433221 11456677777776654 221110
Q ss_pred ccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccc-ccccccCCC
Q 003270 449 LVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVL-SDAYINCPL 527 (835)
Q Consensus 449 l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l-~~~~~~~~~ 527 (835)
.........+++.+++..+.... .+. .+..+++|+.+++..+... ... +..+..+++
T Consensus 389 ------~~~~~~~~~~L~~L~~~~~~~~~----~~~-----~~~~l~~L~~l~l~~~~~~-------~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 389 ------CSQSDFGTISLKYLDLSFNGVIT----MSS-----NFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRN 446 (635)
T ss_dssp ------CCHHHHSCSCCCEEECCSCSEEE----ECS-----CCTTCTTCCEEECTTSEEE-------STTSSCTTTTCTT
T ss_pred ------cccchhhhhhhhhhhcccccccc----ccc-----cccccccccchhhhhcccc-------ccccccccccccc
Confidence 00111133445555554433211 111 1456677777777666553 222 234667788
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~ 606 (835)
++.+++++|. +. ...+..+..+++|+.|++++|.......+..+..+++|++|+|++|+++++ |..|.++++|++|+
T Consensus 447 l~~l~ls~n~-l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 447 LIYLDISHTH-TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp CCEEECTTSC-CE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccc-cc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 8888888873 32 334556677888888888888765554456788888888888888888876 44788888888888
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC-CCccEEEccCCCCCc
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC-THLTHVSLNGCGNMH 667 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 667 (835)
|++|+ +++..+..+ ..+++|++|++++|+++. ..+..+..+ ++|++|++++|+-..
T Consensus 525 Ls~N~-l~~l~~~~~---~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 525 MSHNN-FFSLDTFPY---KCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSC-CCBCCCGGG---TTCTTCCEEECTTSCCCB-CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCc-CCCCChhHH---hCCCCCCEEECCCCcCCC-CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 88887 777766554 778888888888888877 456666666 578888888887544
No 27
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.1e-28 Score=276.60 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=56.3
Q ss_pred cccccEEeccccc----chhhhhhcCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHhCCcc
Q 003270 750 CFNLCFLNLSNCC----SLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSL 825 (835)
Q Consensus 750 ~~~L~~L~l~~c~----~l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~p~l 825 (835)
+++|+.|++++|. .+..+...|++|++|+|++|++++.+++..+..+++|++|++++|+ +++.+...+++.+|.+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 4555556665554 1233445678888888888888877788877888888888888887 7777777777777776
Q ss_pred hhh
Q 003270 826 KRI 828 (835)
Q Consensus 826 ~~l 828 (835)
.-.
T Consensus 541 ~~~ 543 (592)
T 3ogk_B 541 NIE 543 (592)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 28
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=5e-27 Score=270.17 Aligned_cols=436 Identities=19% Similarity=0.282 Sum_probs=232.7
Q ss_pred HHhhcCCCCcEEeecCCCCCC-------------HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 205 QAVLNCPLLHLLDIASCHKLS-------------DAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 205 ~~~~~~~~L~~L~l~~~~~l~-------------~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
..+..+++|++|++++|..+. ...+......+++|++|++++|. +++..+..+...+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCC
Confidence 344556666666666654222 12344555677888888888887 7777777776566666666666
Q ss_pred CCCCCCccccCCCCCcEEecCCCCCCChhhHHHhh-hccCccEEEccCCCccccccccCcccceeeccccccccchhhcc
Q 003270 272 YCPNISLESVRLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 350 (835)
Q Consensus 272 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~ 350 (835)
+| ..+.+.....+. .+++|++|++++|.+.+..+..++.
T Consensus 139 ~~---------------------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~------------------- 178 (594)
T 2p1m_B 139 SC---------------------EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH------------------- 178 (594)
T ss_dssp SC---------------------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG-------------------
T ss_pred Cc---------------------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH-------------------
Confidence 55 344444444443 6788888888887643322211111
Q ss_pred cccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecC
Q 003270 351 MMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 430 (835)
Q Consensus 351 ~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 430 (835)
....+++|++|+++++. .. .....+..+...+++|++|++++|..+++ .+..+ ..+++|++|.+..
T Consensus 179 ------~~~~~~~L~~L~l~~~~-~~---~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~---~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 179 ------FPDTYTSLVSLNISCLA-SE---VSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLL---QRAPQLEELGTGG 244 (594)
T ss_dssp ------SCTTCCCCCEEECTTCC-SC---CCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHH---HHCTTCSEEECSB
T ss_pred ------HhhcCCcCcEEEecccC-Cc---CCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHH---hcCCcceEccccc
Confidence 12356677777777665 11 12234455555678888888888755555 44444 5667777777765
Q ss_pred CCC-CccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccc-ccccceeE
Q 003270 431 CEG-LTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTL-GIEALHMV 508 (835)
Q Consensus 431 ~~~-l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l-~l~~~~l~ 508 (835)
+.. +..- .+. .++. .+.+|++|+.+ .+....
T Consensus 245 ~~~~~~~~----------------~~~------------------------~l~~-----~l~~~~~L~~Ls~~~~~~-- 277 (594)
T 2p1m_B 245 YTAEVRPD----------------VYS------------------------GLSV-----ALSGCKELRCLSGFWDAV-- 277 (594)
T ss_dssp CCCCCCHH----------------HHH------------------------HHHH-----HHHTCTTCCEEECCBTCC--
T ss_pred ccCccchh----------------hHH------------------------HHHH-----HHhcCCCcccccCCcccc--
Confidence 531 0000 000 0000 02333333333 111110
Q ss_pred EEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCcc
Q 003270 509 VLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTF 588 (835)
Q Consensus 509 ~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~ 588 (835)
...++..+..+++|++|++++|. +++..+...+..+++|++|++++| ..+.+.
T Consensus 278 ------~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l------------------ 330 (594)
T 2p1m_B 278 ------PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGL------------------ 330 (594)
T ss_dssp ------GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHH------------------
T ss_pred ------hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHH------------------
Confidence 02233333345555555555553 444444444445555555555554 222222
Q ss_pred ccCchHHHhccccccEEec--------ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEc
Q 003270 589 LTNLEPVFESCLQLKVLKL--------QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 660 (835)
Q Consensus 589 ~~~l~~~~~~~~~L~~L~l--------~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 660 (835)
+.....+++|++|++ .+|..+++.....+. ..+++|+.|+++.+.+++..+......+++|++|++
T Consensus 331 ----~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~--~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 331 ----EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS--MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp ----HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH--HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ----HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH--HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 222333455555555 223335555444432 235666666666666666444444445667777776
Q ss_pred c-----CCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCc-ccccCccce
Q 003270 661 N-----GCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPP-QARCFHLSS 734 (835)
Q Consensus 661 ~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~-~~~~~~L~~ 734 (835)
. +|..+.+.+.. ..++. +..+++|+.
T Consensus 405 ~~~~~~~~~~l~~~~~~------------------------------------------------~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLD------------------------------------------------IGFGAIVEHCKDLRR 436 (594)
T ss_dssp EESSTTCCCTTTCCCTH------------------------------------------------HHHHHHHHHCTTCCE
T ss_pred ecccCCCcccccCCchh------------------------------------------------hHHHHHHhhCCCccE
Confidence 6 33333211100 00000 223344555
Q ss_pred EeccCCCCcccc-----ccccccccEEecccccc----hhhhhhcCCccceeecccCcCChhHHHHHHhcCCCcceeecc
Q 003270 735 LNLSLSANLKEV-----DVACFNLCFLNLSNCCS----LETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVR 805 (835)
Q Consensus 735 L~l~~~~~l~~~-----~~~~~~L~~L~l~~c~~----l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~ 805 (835)
|++++ .+++. ...+++|+.|++++|.. +..+...||+|++|+|++|++++.+++.....+++|++|+++
T Consensus 437 L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 437 LSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred EeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 55543 22221 11255666666666642 233334688888888888888877777767778888888888
Q ss_pred cccCCCchHHHHHHHhCCcch
Q 003270 806 FCPKICSTSMGRLRAACPSLK 826 (835)
Q Consensus 806 ~c~~l~~~~~~~~~~~~p~l~ 826 (835)
+|+. ...++..+++.+|.++
T Consensus 515 ~~~~-~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 515 SCSV-SFGACKLLGQKMPKLN 534 (594)
T ss_dssp SSCC-BHHHHHHHHHHCTTEE
T ss_pred CCCC-CHHHHHHHHHhCCCCE
Confidence 8875 6677777777788874
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.6e-27 Score=264.55 Aligned_cols=134 Identities=18% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++|+.+++++|.+. +..|..+..+++|++|++++| .+.+ ..+..+..+++|++|++++|... ...+..+.
T Consensus 275 ~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~ 344 (455)
T 3v47_A 275 SGVKTCDLSKSKIF-------ALLKSVFSHFTDLEQLTLAQN-EINK-IDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFE 344 (455)
T ss_dssp SCCCEEECCSSCCC-------EECTTTTTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSCCC-EECGGGGT
T ss_pred cCceEEEecCcccc-------ccchhhcccCCCCCEEECCCC-cccc-cChhHhcCcccCCEEECCCCccC-CcChhHhc
Confidence 45555555555553 344555666666666666666 3432 22334555666666666666532 22244556
Q ss_pred hccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 575 SLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
.+++|++|++++|.++++ |..+..+++|++|++++|+ +++..... +..+++|+.|++++|+++.
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSCBCC
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhH---hccCCcccEEEccCCCccc
Confidence 666666666666666654 3455666666666666665 55443332 2455666666666665544
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=3.8e-28 Score=266.40 Aligned_cols=264 Identities=15% Similarity=0.107 Sum_probs=128.0
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCC-------------CEEEecCCCCCcccc
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSML-------------KSLNVNDATLGNGVQ 164 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~~ 164 (835)
.+++++++++ +.+ +.+|++++++++|++|++++|.+.+.+|..++.+++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~-n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHS-SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhccc-Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 4677777777 455 5577777888888888888887777777777776654 777777776643 33
Q ss_pred cccccCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeC
Q 003270 165 EIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDM 244 (835)
Q Consensus 165 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L 244 (835)
.. .++|++|++++|.+..+...+++|++|++++|.+...-...++|++|++++| .++. +| .++++++|++|++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n-~l~~--lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEK--LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSS--CC-CCTTCTTCCEEEC
T ss_pred CC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCC-CCCC--Cc-ccCCCCCCCEEEC
Confidence 32 2566777777776666555556666666666655421111245666666665 3441 33 3555566666666
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccc
Q 003270 245 SNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS 324 (835)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 324 (835)
++|. +++ .+. ...+|++|++++|. +.+. ..++.+++|++|++++|.+.+
T Consensus 161 ~~N~-l~~-lp~----~~~~L~~L~L~~n~----------------------l~~l--~~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 161 DNNS-LKK-LPD----LPPSLEFIAAGNNQ----------------------LEEL--PELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp CSSC-CSC-CCC----CCTTCCEEECCSSC----------------------CSSC--CCCTTCTTCCEEECCSSCCSS-
T ss_pred CCCc-Ccc-cCC----CcccccEEECcCCc----------------------CCcC--ccccCCCCCCEEECCCCcCCc-
Confidence 6655 432 110 22344555554443 3331 134455555555555554332
Q ss_pred ccccCcccceeeccccccccchhhccccccee-eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCC
Q 003270 325 VSLELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 403 (835)
Q Consensus 325 ~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c 403 (835)
+|...++|+.|++.++ .++.+ .+..+++|++|++++|.+++... ..++|++|++++
T Consensus 210 l~~~~~~L~~L~l~~n-----------~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----------~~~~L~~L~l~~- 266 (454)
T 1jl5_A 210 LPDLPLSLESIVAGNN-----------ILEELPELQNLPFLTTIYADNNLLKTLPD-----------LPPSLEALNVRD- 266 (454)
T ss_dssp CCCCCTTCCEEECCSS-----------CCSSCCCCTTCTTCCEEECCSSCCSSCCS-----------CCTTCCEEECCS-
T ss_pred CCCCcCcccEEECcCC-----------cCCcccccCCCCCCCEEECCCCcCCcccc-----------cccccCEEECCC-
Confidence 2222233333333222 11111 24556667777777766655310 125677777777
Q ss_pred cCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 404 ESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+.+++. | ..+++|++|++++|.
T Consensus 267 N~l~~l-~------~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 267 NYLTDL-P------ELPQSLTFLDVSENI 288 (454)
T ss_dssp SCCSCC-C------CCCTTCCEEECCSSC
T ss_pred Cccccc-C------cccCcCCEEECcCCc
Confidence 355542 1 123566777776664
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=5.7e-27 Score=257.30 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=32.3
Q ss_pred CCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccC
Q 003270 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 536 (835)
Q Consensus 462 ~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~ 536 (835)
+++|+.+++++|..++..+.-...++.+++.++++|+.+++++|+++ + ++ +..+++|+.|++++|
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~-------~-l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-------E-LD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS-------C-CC--CTTCTTCSEEECCSS
T ss_pred cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc-------c-cc--cccCCcCcEEECCCC
Confidence 34444444444444333222223344445555566666666666653 2 22 455566666666665
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3e-27 Score=262.29 Aligned_cols=361 Identities=16% Similarity=0.130 Sum_probs=185.9
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhh-HHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF-FHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
+++++|++++ +.+.+..+..|..+++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCS-SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecC-CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 3455555555 3444444445555555555555555554332 3345555555555555555544444444444444444
Q ss_pred eccCccccccccCCCCCcEEEecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHH-HHhcCCCCCEEeCCCCCCCChH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRL-AATSCPQLESLDMSNCSCVSDE 253 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~-~~~~~~~L~~L~L~~~~~l~~~ 253 (835)
++++|.+... +. ..+..+++|++|++++|. ++.. .+. .+.++++|++|++++|. +++.
T Consensus 109 ~L~~n~l~~~----------------~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~~l~~L~~L~L~~n~-l~~~ 169 (455)
T 3v47_A 109 TLTQCNLDGA----------------VLSGNFFKPLTSLEMLVLRDNN-IKKI-QPASFFLNMRRFHVLDLTFNK-VKSI 169 (455)
T ss_dssp ECTTSCCBTH----------------HHHSSTTTTCTTCCEEECCSSB-CCSC-CCCGGGGGCTTCCEEECTTCC-BSCC
T ss_pred eCCCCCCCcc----------------ccCcccccCcccCCEEECCCCc-cCcc-CcccccCCCCcccEEeCCCCc-cccc
Confidence 4444443210 00 114556666666666653 3311 122 25666667777776666 4433
Q ss_pred HHHHHHH-hCCCCcEEecCCCC--CCCc---------cccCCCCCcEEecCCCCCCChhhHHHhhhc---cCccEEEccC
Q 003270 254 SLREIAL-SCANLRILNSSYCP--NISL---------ESVRLPMLTVLQLHSCEGITSASMAAISHS---YMLEVLELDN 318 (835)
Q Consensus 254 ~~~~~~~-~~~~L~~L~l~~~~--~l~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~ 318 (835)
.+..+.. ...+|+.|+++++. .++. .+..+++|++|++++| .+.+..+..+... .+|+.|++++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeecc
Confidence 3332220 12456666666664 1111 1224566777777775 6666666665543 6677777766
Q ss_pred CCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEE
Q 003270 319 CNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEV 398 (835)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L 398 (835)
|...+.... . +.+.+........+ ..++|++|
T Consensus 249 ~~~~~~~~~----------------------~---------------------~~~~~~~~~~~~~~-----~~~~L~~L 280 (455)
T 3v47_A 249 SYNMGSSFG----------------------H---------------------TNFKDPDNFTFKGL-----EASGVKTC 280 (455)
T ss_dssp CTTTSCCTT----------------------C---------------------CSSCCCCTTTTGGG-----TTSCCCEE
T ss_pred ccccccccc----------------------h---------------------hhhccCcccccccc-----cccCceEE
Confidence 653322100 0 00000000000011 23567777
Q ss_pred ecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccc
Q 003270 399 DLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIES 478 (835)
Q Consensus 399 ~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~ 478 (835)
++++ +.+++..+..+ ..+++|++|++++|. ++
T Consensus 281 ~l~~-n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~------------------------------------------- 312 (455)
T 3v47_A 281 DLSK-SKIFALLKSVF---SHFTDLEQLTLAQNE-IN------------------------------------------- 312 (455)
T ss_dssp ECCS-SCCCEECTTTT---TTCTTCCEEECTTSC-CC-------------------------------------------
T ss_pred EecC-ccccccchhhc---ccCCCCCEEECCCCc-cc-------------------------------------------
Confidence 7777 46665555444 455666666665554 21
Q ss_pred cccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEe
Q 003270 479 ASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLI 558 (835)
Q Consensus 479 ~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~ 558 (835)
+..|..+..+++|++|++++| .++ +..+..+..+++|++|+
T Consensus 313 -------------------------------------~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 313 -------------------------------------KIDDNAFWGLTHLLKLNLSQN-FLG-SIDSRMFENLDKLEVLD 353 (455)
T ss_dssp -------------------------------------EECTTTTTTCTTCCEEECCSS-CCC-EECGGGGTTCTTCCEEE
T ss_pred -------------------------------------ccChhHhcCcccCCEEECCCC-ccC-CcChhHhcCcccCCEEE
Confidence 112233444555555555555 332 22234455566666666
Q ss_pred ccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchh
Q 003270 559 LMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 559 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
+++|... ...+..+..+++|++|++++|+++++|. .+..+++|++|++++|+ +++.
T Consensus 354 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 410 (455)
T 3v47_A 354 LSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP-WDCS 410 (455)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-BCCC
T ss_pred CCCCccc-ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC-cccC
Confidence 6666533 2235567777888888888888877665 56778888888888887 5543
No 33
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=2.3e-26 Score=255.71 Aligned_cols=207 Identities=18% Similarity=0.315 Sum_probs=134.1
Q ss_pred CCCcEEEecccchH-----HHhhcCCCCcEEeecCCCCCCHH---HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhC
Q 003270 191 PQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALSC 262 (835)
Q Consensus 191 ~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 262 (835)
++|++|+++++.+. ..+..+++|++|++++| .+++. .++..+..+++|++|++++|. +++..+..+...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 34555666665543 34677888999999888 46654 456677888899999999888 8877777777666
Q ss_pred C----CCcEEecCCCCC-------CCccccCCCCCcEEecCCCCCCChhhHHHhhh-----ccCccEEEccCCCcccccc
Q 003270 263 A----NLRILNSSYCPN-------ISLESVRLPMLTVLQLHSCEGITSASMAAISH-----SYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 263 ~----~L~~L~l~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~ 326 (835)
+ +|++|++++|.- ++..+..+++|++|++++| .+.+..+..+.. .++|++|++++|.+.+..+
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 6 688888888862 2445667888888888887 577666665554 3568888888886544321
Q ss_pred ccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhH-HHHhhCCcccEEecCCCcC
Q 003270 327 LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLT-SLALQCQCLQEVDLTDCES 405 (835)
Q Consensus 327 ~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~c~~ 405 (835)
..++. .+..+++|++|++++|.+++..+. .+. .+....++|++|++++| .
T Consensus 160 ~~l~~-------------------------~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n-~ 210 (461)
T 1z7x_W 160 EPLAS-------------------------VLRAKPDFKELTVSNNDINEAGVR---VLCQGLKDSPCQLEALKLESC-G 210 (461)
T ss_dssp HHHHH-------------------------HHHHCTTCCEEECCSSBCHHHHHH---HHHHHHHHSCCCCCEEECTTS-C
T ss_pred HHHHH-------------------------HHhhCCCCCEEECcCCCcchHHHH---HHHHHHhcCCCCceEEEccCC-C
Confidence 11110 245566777777777776553221 111 11113457777777774 6
Q ss_pred Cchhh----hhhccCCCCCCCccEEEecCCC
Q 003270 406 LTNSV----CEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 406 l~~~~----~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+++.. +..+ ..+++|++|++++|.
T Consensus 211 l~~~~~~~l~~~l---~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 211 VTSDNCRDLCGIV---ASKASLRELALGSNK 238 (461)
T ss_dssp CBTTHHHHHHHHH---HHCTTCCEEECCSSB
T ss_pred CcHHHHHHHHHHH---HhCCCccEEeccCCc
Confidence 66643 3333 456777777777764
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.3e-25 Score=249.07 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=67.3
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~ 601 (835)
+..+++|++|++++| .+.+ ++. +..+++|+.|++++|...+.. .+..+++|++|++++|.+++++ .+..+++
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~ 354 (466)
T 1o6v_A 283 LAGLTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSDVS-SLANLTN 354 (466)
T ss_dssp GTTCTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred ccCCCccCeEEcCCC-cccC--chh-hcCCCCCCEEECcCCcCCCch---hhccCccCCEeECCCCccCCch-hhccCCC
Confidence 444556666666665 3432 222 456666666666666544332 2566777777777777777663 5667777
Q ss_pred ccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 602 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 602 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
|+.|++++|+ +++..+ + ..+++|+.|++++|++++
T Consensus 355 L~~L~l~~n~-l~~~~~--~---~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQ-ISDLTP--L---ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSC-CCBCGG--G---TTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCc-cCccch--h---hcCCCCCEEeccCCcccC
Confidence 7777777776 665544 2 567777777777777765
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=7.7e-26 Score=250.85 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=121.1
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.+. .++. +..+++|++|++++| .+.+ ++. +..+++|+.|++++|...+.
T Consensus 239 l~~l~~L~~L~l~~n~l~--------~~~~-~~~l~~L~~L~l~~n-~l~~--~~~-~~~l~~L~~L~L~~n~l~~~--- 302 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQIS--------NLAP-LSGLTKLTELKLGAN-QISN--ISP-LAGLTALTNLELNENQLEDI--- 302 (466)
T ss_dssp GGGCTTCSEEECCSSCCC--------CCGG-GTTCTTCSEEECCSS-CCCC--CGG-GTTCTTCSEEECCSSCCSCC---
T ss_pred hhcCCCCCEEECCCCccc--------cchh-hhcCCCCCEEECCCC-ccCc--ccc-ccCCCccCeEEcCCCcccCc---
Confidence 455677777777777663 2232 778899999999998 4554 333 78899999999999986653
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++|++|++++|.++++++ +..+++|++|++++|+ +++.. .+..+++|+.|++++|++++ ..+ +.
T Consensus 303 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~l~~-~~~--~~ 372 (466)
T 1o6v_A 303 SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS-----SLANLTNINWLSAGHNQISD-LTP--LA 372 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSCCCB-CGG--GT
T ss_pred hhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch-----hhccCCCCCEEeCCCCccCc-cch--hh
Confidence 248899999999999999998766 7899999999999998 87762 34789999999999999987 344 88
Q ss_pred hCCCccEEEccCCC
Q 003270 651 YCTHLTHVSLNGCG 664 (835)
Q Consensus 651 ~~~~L~~L~l~~~~ 664 (835)
.+++|++|++++|+
T Consensus 373 ~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 373 NLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCCEE
T ss_pred cCCCCCEEeccCCc
Confidence 99999999999986
No 36
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.3e-25 Score=249.61 Aligned_cols=158 Identities=19% Similarity=0.269 Sum_probs=87.5
Q ss_pred CCeeEEEccCCcchhhH-HHHHHhhCCcCcEEEcCCcccChh----hHHhhcCCCCCCEEEecCCCCCcccc-cccccCC
Q 003270 98 PNATEVNIYGAPAIHLL-VMKAVSLLRNLEALTLGRGQLGDA----FFHALADCSMLKSLNVNDATLGNGVQ-EIPINHD 171 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~ 171 (835)
+++++|+++++ .+.+. ....+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+ .....+.
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46778888774 44443 333477788888888888887753 46667777888888888887765322 2333344
Q ss_pred ----cccEEeccCcccccc--------ccCCCCCcEEEecccchHH----H-----hhcCCCCcEEeecCCCCCCHH---
Q 003270 172 ----QLRRLEITKCRVMRV--------SIRCPQLEHLSLKRSNMAQ----A-----VLNCPLLHLLDIASCHKLSDA--- 227 (835)
Q Consensus 172 ----~L~~L~l~~~~~~~~--------~~~l~~L~~L~l~~~~i~~----~-----~~~~~~L~~L~l~~~~~l~~~--- 227 (835)
+|++|++++|.+... ...+++|++|++++|.+.. . ....++|++|++++| .+++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence 577777777666531 1234445555554444431 1 112334555555555 33322
Q ss_pred HHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 228 AIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 228 ~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
.++..+..+++|++|++++|. +++..+..+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l 190 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND-INEAGVRVL 190 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEECcCCC-cchHHHHHH
Confidence 233444455555555555555 444444433
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.1e-25 Score=246.86 Aligned_cols=397 Identities=15% Similarity=0.102 Sum_probs=220.8
Q ss_pred eeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCc-------------CcEEEcCCcccChhhHHhh
Q 003270 77 CLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRN-------------LEALTLGRGQLGDAFFHAL 143 (835)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~-------------L~~L~l~~~~i~~~~~~~l 143 (835)
.+.++.... ..++..+..++++++|++++ +.+.+.+|.+++.+++ +++|++++|.+++ +|.
T Consensus 15 ~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~-- 88 (454)
T 1jl5_A 15 EPLRHSSNL--TEMPVEAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE-- 88 (454)
T ss_dssp ---------------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS--
T ss_pred hhhcccCch--hhCChhHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC--
Confidence 344444443 35666678889999999999 5676666666666665 5999999999886 232
Q ss_pred cCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccchH--HHhhcCCCCcEEeecCC
Q 003270 144 ADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASC 221 (835)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~L~~L~l~~~ 221 (835)
..++|++|++++|.+++ +|.. +++|++|++++|.+..+....++|++|++++|.+. ..++.+++|++|++++|
T Consensus 89 -~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 89 -LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163 (454)
T ss_dssp -CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred -CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC
Confidence 24789999999999976 6653 48999999999999887755689999999999876 35788999999999998
Q ss_pred CCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCCh
Q 003270 222 HKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITS 299 (835)
Q Consensus 222 ~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~ 299 (835)
.++. +|. ...+|++|++++|. +++. + .+. .+++|+.|++++|. .+|. ..++|++|++++| .+..
T Consensus 164 -~l~~--lp~---~~~~L~~L~L~~n~-l~~l-~-~~~-~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n-~l~~ 229 (454)
T 1jl5_A 164 -SLKK--LPD---LPPSLEFIAAGNNQ-LEEL-P-ELQ-NLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNN-ILEE 229 (454)
T ss_dssp -CCSC--CCC---CCTTCCEEECCSSC-CSSC-C-CCT-TCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSS
T ss_pred -cCcc--cCC---CcccccEEECcCCc-CCcC-c-ccc-CCCCCCEEECCCCcCCcCCC---CcCcccEEECcCC-cCCc
Confidence 4652 332 34699999999998 6652 2 444 89999999999986 3333 2368999999997 6653
Q ss_pred hhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchh
Q 003270 300 ASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL 379 (835)
Q Consensus 300 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~ 379 (835)
.+ .++.+++|++|++++|.+.+ +|...++++.|++. +|.++++. ...++|+.+++++|.+++...
T Consensus 230 -lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~-----------~N~l~~l~-~~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 230 -LP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVR-----------DNYLTDLP-ELPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECC-----------SSCCSCCC-CCCTTCCEEECCSSCCSEESC
T ss_pred -cc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECC-----------CCcccccC-cccCcCCEEECcCCccCcccC
Confidence 33 47888999999999987654 44444444444443 33333321 123667777777777765310
Q ss_pred hcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCccccccc
Q 003270 380 QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE 459 (835)
Q Consensus 380 ~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~ 459 (835)
..++|++|++++ +.+++.. ...++|++|+++++. ++.++
T Consensus 295 -----------~~~~L~~L~l~~-N~l~~i~-------~~~~~L~~L~Ls~N~-l~~lp--------------------- 333 (454)
T 1jl5_A 295 -----------LPPNLYYLNASS-NEIRSLC-------DLPPSLEELNVSNNK-LIELP--------------------- 333 (454)
T ss_dssp -----------CCTTCCEEECCS-SCCSEEC-------CCCTTCCEEECCSSC-CSCCC---------------------
T ss_pred -----------cCCcCCEEECcC-CcCCccc-------CCcCcCCEEECCCCc-ccccc---------------------
Confidence 114677777777 4665421 112467777776654 43322
Q ss_pred ccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCc--ccccccccCCCcceEecccCC
Q 003270 460 LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCG--VLSDAYINCPLLTSLDASFCS 537 (835)
Q Consensus 460 ~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~--~l~~~~~~~~~L~~L~ls~~~ 537 (835)
..+++|+.+++++|. +.. +|. .+++|+.+++++|+++ + .+|..+. .|. .|.
T Consensus 334 ~~~~~L~~L~L~~N~-l~~---lp~--------~l~~L~~L~L~~N~l~-------~l~~ip~~l~------~L~--~n~ 386 (454)
T 1jl5_A 334 ALPPRLERLIASFNH-LAE---VPE--------LPQNLKQLHVEYNPLR-------EFPDIPESVE------DLR--MNS 386 (454)
T ss_dssp CCCTTCCEEECCSSC-CSC---CCC--------CCTTCCEEECCSSCCS-------SCCCCCTTCC------EEE--CCC
T ss_pred ccCCcCCEEECCCCc-ccc---ccc--------hhhhccEEECCCCCCC-------cCCCChHHHH------hhh--hcc
Confidence 223556666665542 221 221 2356666666666653 2 3343322 221 121
Q ss_pred CCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC
Q 003270 538 QLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN 591 (835)
Q Consensus 538 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~ 591 (835)
.. +.++. .+++|+.|++++|+..+. ..+ -++++.|.+.+|.+.+
T Consensus 387 -~~-~~i~~---~~~~L~~L~ls~N~l~~~---~~i--P~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 387 -HL-AEVPE---LPQNLKQLHVETNPLREF---PDI--PESVEDLRMNSERVVD 430 (454)
T ss_dssp ------------------------------------------------------
T ss_pred -cc-ccccc---ccCcCCEEECCCCcCCcc---ccc--hhhHhheeCcCcccCC
Confidence 11 11222 247788888888875541 011 1457777788877664
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7.1e-25 Score=240.67 Aligned_cols=323 Identities=19% Similarity=0.224 Sum_probs=180.3
Q ss_pred CCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 97 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 97 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
++++++|++++ +.+.+. + ++..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + +..+++|++|
T Consensus 41 l~~L~~L~Ls~-n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHN-SSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCS-SCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccC-CCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 45677777777 345543 2 567777777777777777763 2 66777777777777776652 2 5666777777
Q ss_pred eccCccccccc-cCCCCCcEEEecccchHH-HhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHH
Q 003270 177 EITKCRVMRVS-IRCPQLEHLSLKRSNMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254 (835)
Q Consensus 177 ~l~~~~~~~~~-~~l~~L~~L~l~~~~i~~-~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~ 254 (835)
++++|.+..+. ..+++|++|++++|.+.. .++.+++|++|++++|..+... .+..+++|++|++++|. +++
T Consensus 112 ~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~-- 184 (457)
T 3bz5_A 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNK-ITE-- 184 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSC-CCC--
T ss_pred ECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCc-cce--
Confidence 77776665432 244555555555554431 2344444555555444322211 13344444444444444 332
Q ss_pred HHHHHHhCCCCcEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccce
Q 003270 255 LREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQN 334 (835)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 334 (835)
++ +..+++|++|++++| .+.+. .++.+++|++|++++|.+.+ +|
T Consensus 185 ---------------------l~--l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-------- 228 (457)
T 3bz5_A 185 ---------------------LD--VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTE-ID-------- 228 (457)
T ss_dssp ---------------------CC--CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSC-CC--------
T ss_pred ---------------------ec--cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCcccc-cC--------
Confidence 22 444555555555554 34433 24555666666666665433 22
Q ss_pred eeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhc
Q 003270 335 IRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 414 (835)
Q Consensus 335 L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~ 414 (835)
+..+++++.+++++|.++++.+..+++|+.++++. .+|+.|++++| ...+..|
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~---------------------n~L~~L~l~~n-~~~~~~~--- 281 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ---------------------TDLLEIDLTHN-TQLIYFQ--- 281 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT---------------------CCCSCCCCTTC-TTCCEEE---
T ss_pred --ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC---------------------CCCCEEECCCC-ccCCccc---
Confidence 12233333334444444444445555566555533 35666777774 3333322
Q ss_pred cCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcC
Q 003270 415 SDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGIC 494 (835)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~ 494 (835)
...+++|+.|++++|..+..++.....++.+.++++ ++|+.++++++. ++.+.+.+|
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~----------~~L~~L~L~~N~-----------l~~l~l~~l 338 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN----------PKLVYLYLNNTE-----------LTELDVSHN 338 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC----------TTCCEEECTTCC-----------CSCCCCTTC
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhc----------ccCCEEECCCCc-----------ccccccccC
Confidence 156777888888887766666554444544444443 556666666542 222347888
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccC
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 536 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~ 536 (835)
++|+.+++++|+++ + ++.|..|++++|
T Consensus 339 ~~L~~L~l~~N~l~-------~--------l~~L~~L~l~~n 365 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQ-------D--------FSSVGKIPALNN 365 (457)
T ss_dssp TTCSEEECCSSCCC-------B--------CTTGGGSSGGGT
T ss_pred CcCcEEECCCCCCC-------C--------ccccccccccCC
Confidence 99999999999874 1 356777777776
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.2e-23 Score=224.25 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=38.3
Q ss_pred hhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC
Q 003270 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 652 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~ 652 (835)
+..+++|++|++++|.+++++ .+..+++|++|++++|+ +++..+..+ ..+++|+.|++++|++++ ..+ +..+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~l---~~l~~L~~L~L~~n~l~~-~~~--~~~l 332 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ-LGNEDMEVI---GGLTNLTTLFLSQNHITD-IRP--LASL 332 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCGGGHHHH---HTCTTCSEEECCSSSCCC-CGG--GGGC
T ss_pred HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc-CCCcChhHh---hccccCCEEEccCCcccc-ccC--hhhh
Confidence 444444444455444444442 24444555555555544 444443333 334455555555554443 112 4445
Q ss_pred CCccEEEccCCC
Q 003270 653 THLTHVSLNGCG 664 (835)
Q Consensus 653 ~~L~~L~l~~~~ 664 (835)
++|++|++++|+
T Consensus 333 ~~L~~L~l~~N~ 344 (347)
T 4fmz_A 333 SKMDSADFANQV 344 (347)
T ss_dssp TTCSEESSSCC-
T ss_pred hccceeehhhhc
Confidence 555555555443
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.1e-24 Score=232.40 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=76.9
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~ 601 (835)
+..+++|++|++++| .+.+ ..+..+..+++|++|++++|..... +..+..+++|++|++++|++..+|..+..+++
T Consensus 244 l~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN-ELEK-IMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp GGGCTTCSEEECCSS-CCCE-EESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred HcCCCCccEEECCCC-cCCC-cChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCccccccCc
Confidence 344555555555555 2322 2234455555566666665554332 23345677888888888888887777777888
Q ss_pred ccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC
Q 003270 602 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 654 (835)
Q Consensus 602 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~ 654 (835)
|++|++++|+ +++.. +..+++|+.|++++|++........+..+..
T Consensus 320 L~~L~L~~N~-i~~~~------~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 320 LENLYLDHNS-IVTLK------LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365 (390)
T ss_dssp CSEEECCSSC-CCCCC------CCTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred CCEEECCCCc-cceeC------chhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence 8888888887 66552 3567888888888888877544444444443
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.6e-23 Score=221.56 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=94.1
Q ss_pred ccCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCC
Q 003270 168 INHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 247 (835)
Q Consensus 168 ~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~ 247 (835)
..+++|++|+++++.+..+. .+..+++|++|++++| .+++ ++. +.++++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~------------------~~~~~~~L~~L~l~~n-~i~~--~~~-~~~l~~L~~L~L~~n 98 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ------------------GIEYLTNLEYLNLNGN-QITD--ISP-LSNLVKLTNLYIGTN 98 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT------------------TGGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSS
T ss_pred hhcccccEEEEeCCccccch------------------hhhhcCCccEEEccCC-cccc--chh-hhcCCcCCEEEccCC
Confidence 34566666666666554432 2344455555555554 2331 111 445555555555555
Q ss_pred CCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccc
Q 003270 248 SCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSV 325 (835)
Q Consensus 248 ~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 325 (835)
. +++. ..+. .+++|++|++++|. .++. +..+++|++|++++|...... ..+..+++|++|++++|...+..
T Consensus 99 ~-i~~~--~~~~-~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 99 K-ITDI--SALQ-NLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp C-CCCC--GGGT-TCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCG
T ss_pred c-ccCc--hHHc-CCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCch
Confidence 4 3321 1222 44455555555443 2222 444455555555554222221 22455555666665555432211
Q ss_pred cccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcC
Q 003270 326 SLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCES 405 (835)
Q Consensus 326 ~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~ 405 (835)
.+..+++|+++++++|.+.+... + ..+++|+.+++++ +.
T Consensus 172 -------------------------------~~~~l~~L~~L~l~~n~l~~~~~-----~----~~l~~L~~L~l~~-n~ 210 (347)
T 4fmz_A 172 -------------------------------PIANLTDLYSLSLNYNQIEDISP-----L----ASLTSLHYFTAYV-NQ 210 (347)
T ss_dssp -------------------------------GGGGCTTCSEEECTTSCCCCCGG-----G----GGCTTCCEEECCS-SC
T ss_pred -------------------------------hhccCCCCCEEEccCCccccccc-----c----cCCCccceeeccc-CC
Confidence 13455666666666666654321 1 1456778888877 46
Q ss_pred CchhhhhhccCCCCCCCccEEEecCCC
Q 003270 406 LTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 406 l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+++..+ + ..+++|++|++++|.
T Consensus 211 l~~~~~--~---~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 211 ITDITP--V---ANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCCCGG--G---GGCTTCCEEECCSSC
T ss_pred CCCCch--h---hcCCcCCEEEccCCc
Confidence 665433 2 556677777777664
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-23 Score=226.30 Aligned_cols=116 Identities=19% Similarity=0.173 Sum_probs=79.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.++ +..|..+..+++|++|++++| .++. ++..+..+++|++|++++|+.... +
T Consensus 244 l~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~~n~l~~~--~ 311 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELE-------KIMYHPFVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLHV--E 311 (390)
T ss_dssp GGGCTTCSEEECCSSCCC-------EEESGGGTTCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECCSSCCCCC--G
T ss_pred HcCCCCccEEECCCCcCC-------CcChhHccccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECCCCcceec--C
Confidence 556677777777777764 444666777777888888777 4543 444456677788888877765432 4
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESL 621 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 621 (835)
..+..+++|++|++++|.++.++ +..+++|++|++++|+ ++......+
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~-~~~~~~~~~ 359 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND-WDCNSLRAL 359 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC-EEHHHHHHH
T ss_pred ccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC-ccchhHHHH
Confidence 55677777888888877777664 5667777788888777 666555544
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=7.2e-24 Score=236.28 Aligned_cols=289 Identities=18% Similarity=0.205 Sum_probs=217.3
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
++++.|++++ +.+....+..|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..+.++++|++|+
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 5789999999 577777677899999999999999999988889999999999999999998766566788899999999
Q ss_pred ccCcccccc----ccCCCCCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCC
Q 003270 178 ITKCRVMRV----SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSC 249 (835)
Q Consensus 178 l~~~~~~~~----~~~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~ 249 (835)
+++|.+..+ ..++++|++|++++|.+. ..+..+++|++|++++| .++. ..+..+.++++|++|++++|.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~l~~l~~L~~L~l~~n~- 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTS-IPTEALSHLHGLIVLRLRHLN- 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSS-CCHHHHTTCTTCCEEEEESCC-
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcc-cChhHhcccCCCcEEeCCCCc-
Confidence 999988654 346889999999988775 46778889999999888 4552 224567888899999998887
Q ss_pred CChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccccc
Q 003270 250 VSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 250 l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
+.......+. .+++|+.|++++|. .++.......+|++|++++| .+.......+..+++|++|++++|.+.+..+
T Consensus 188 i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 188 INAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp CCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred CcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 6644333343 67888888888876 34445555668888888886 6776666677788888888888876543222
Q ss_pred ccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCC
Q 003270 327 LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESL 406 (835)
Q Consensus 327 ~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l 406 (835)
. .+..+++|++|++++|.+++..+..+. .+++|++|++++ +.+
T Consensus 266 ~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~-N~l 308 (477)
T 2id5_A 266 S-----------------------------MLHELLRLQEIQLVGGQLAVVEPYAFR-------GLNYLRVLNVSG-NQL 308 (477)
T ss_dssp T-----------------------------SCTTCTTCCEEECCSSCCSEECTTTBT-------TCTTCCEEECCS-SCC
T ss_pred h-----------------------------hccccccCCEEECCCCccceECHHHhc-------CcccCCEEECCC-CcC
Confidence 1 245667777777777777765443332 346788888888 477
Q ss_pred chhhhhhccCCCCCCCccEEEecCCC
Q 003270 407 TNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 407 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
++..+..+ ..+++|++|++++++
T Consensus 309 ~~~~~~~~---~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 309 TTLEESVF---HSVGNLETLILDSNP 331 (477)
T ss_dssp SCCCGGGB---SCGGGCCEEECCSSC
T ss_pred ceeCHhHc---CCCcccCEEEccCCC
Confidence 77666666 667788888887775
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=234.50 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=109.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++|+.+++++|.+. +..+..+..+++|++|++++|+.+. .++.......+|++|++++|.... ...
T Consensus 172 l~~l~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~-~~~ 241 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLD--TMTPNCLYGLNLTSLSITHCNLTA-VPY 241 (477)
T ss_dssp HTTCTTCCEEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCC--EECTTTTTTCCCSEEEEESSCCCS-CCH
T ss_pred hcccCCCcEEeCCCCcCc-------EeChhhcccCcccceeeCCCCcccc--ccCcccccCccccEEECcCCcccc-cCH
Confidence 456666777777766664 3333456677778888888775332 244444445578888888876543 324
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.+++++. .+..+++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..|
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~ 316 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF---RGLNYLRVLNVSGNQLTT-LEESVF 316 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB---TTCTTCCEEECCSSCCSC-CCGGGB
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHh---cCcccCCEEECCCCcCce-eCHhHc
Confidence 567778888888888888777554 57777888888888877 776655543 677788888888887776 344556
Q ss_pred hhCCCccEEEccCCCCC
Q 003270 650 AYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~~ 666 (835)
..+++|++|++++|+-.
T Consensus 317 ~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 317 HSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCGGGCCEEECCSSCEE
T ss_pred CCCcccCEEEccCCCcc
Confidence 67778888888877643
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.8e-23 Score=235.45 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=69.5
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~ 601 (835)
+..+++|++|++++| .+. +..+..+..+++|+.|++++|...+. +..+..+++|+.|+|++|.++.+|..+..+++
T Consensus 250 l~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 250 LLNYPGLVEVDLSYN-ELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325 (597)
T ss_dssp GGGCTTCSEEECCSS-CCC-EEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred hccCCCCCEEECCCC-ccC-CCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcccccCCC
Confidence 334455555555554 232 12233444555555555555543332 23345567777777777777777777777777
Q ss_pred ccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 602 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 602 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
|+.|++++|+ +++.. +..+++|+.|++++|.+........+.
T Consensus 326 L~~L~L~~N~-l~~~~------~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 326 LENLYLDHNS-IVTLK------LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp CSEEECCSSC-CCCCC------CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCEEECCCCC-CCCcC------hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 7777777777 65442 255777888888888777644444443
No 46
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.3e-23 Score=219.64 Aligned_cols=273 Identities=16% Similarity=0.295 Sum_probs=171.6
Q ss_pred HhhhccccchhhhHHHHHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCc
Q 003270 47 QKIWKSGWILQMTYCIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLE 126 (835)
Q Consensus 47 ~~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~ 126 (835)
+..+......+++.||++|+.+..++..|+.++++...+....+.... .++++.+++++ +.+.+..+. +..+++|+
T Consensus 21 f~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~-n~l~~~~~~-~~~~~~L~ 96 (336)
T 2ast_B 21 FSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPR-SFMDQPLAE-HFSPFRVQ 96 (336)
T ss_dssp HTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHH--HTTCSEEECTT-CEECSCCCS-CCCCBCCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhh--hccceEEEcCC-ccccccchh-hccCCCCC
Confidence 333333345666789999999988899999999998777754443332 16889999998 455554333 55789999
Q ss_pred EEEcCCcccChh-hHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCc-cccc-----cccCCCCCcEEEec
Q 003270 127 ALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC-RVMR-----VSIRCPQLEHLSLK 199 (835)
Q Consensus 127 ~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-----~~~~l~~L~~L~l~ 199 (835)
+|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.. ...++++|++|+++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 999999998876 8888889999999999999888777777777888888888887 4442 12345566666665
Q ss_pred cc-chH-----HHhhcCC-CCcEEeecCCC-CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 200 RS-NMA-----QAVLNCP-LLHLLDIASCH-KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 200 ~~-~i~-----~~~~~~~-~L~~L~l~~~~-~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
+| .+. ..+..++ +|++|++++|. .+++..++..+.++++|++|++++|..+++..+..+. .+++|++|+++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~ 255 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLS 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCC
Confidence 55 433 2345555 66666666553 3444555555555666666666665544444444443 55566666666
Q ss_pred CCCCCCc----cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccccccc
Q 003270 272 YCPNISL----ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE 328 (835)
Q Consensus 272 ~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 328 (835)
+|..+.+ .+..+++|++|++++| +++.....+.. ++..|++++|.+.+..|..
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~--~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKE--ALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHH--HSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHh--hCcceEEecccCccccCCc
Confidence 5543222 2445555666665554 44433333321 1333334555555544443
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.4e-22 Score=227.52 Aligned_cols=314 Identities=17% Similarity=0.159 Sum_probs=191.8
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCc-cccCCCC
Q 003270 209 NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISL-ESVRLPM 285 (835)
Q Consensus 209 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~~ 285 (835)
.+.+++.+++++| .+... -+..+.++++|++|++++|. +++..+..+. .+++|+.|++++|. .++. .++.+++
T Consensus 49 ~l~~l~~l~l~~~-~l~~l-p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKL-PAALLDSFRQVELLNLNDLQ-IEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSC-EESEE-CTHHHHHCCCCSEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCC-CCCCc-CHHHHccCCCCcEEECCCCC-CCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 3578888998887 34421 13456788899999999888 7755444554 77888888888876 3333 3567777
Q ss_pred CcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcc
Q 003270 286 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALH 365 (835)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~ 365 (835)
|++|++++| .+....+..++.+++|++|++++|.+.+..|.. +..+++|+
T Consensus 125 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------------~~~l~~L~ 174 (597)
T 3oja_B 125 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-----------------------------FQATTSLQ 174 (597)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-----------------------------TTTCTTCC
T ss_pred CCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-----------------------------hhcCCcCc
Confidence 888888776 566554445667777777777777654433322 33445555
Q ss_pred eeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcce
Q 003270 366 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLV 445 (835)
Q Consensus 366 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 445 (835)
.|++++|.+++..+. .+++|+.|++++ +.+++. ...++|+.|+++++. +..++..
T Consensus 175 ~L~L~~N~l~~~~~~----------~l~~L~~L~l~~-n~l~~l--------~~~~~L~~L~ls~n~-l~~~~~~----- 229 (597)
T 3oja_B 175 NLQLSSNRLTHVDLS----------LIPSLFHANVSY-NLLSTL--------AIPIAVEELDASHNS-INVVRGP----- 229 (597)
T ss_dssp EEECTTSCCSBCCGG----------GCTTCSEEECCS-SCCSEE--------ECCTTCSEEECCSSC-CCEEECS-----
T ss_pred EEECcCCCCCCcChh----------hhhhhhhhhccc-Cccccc--------cCCchhheeeccCCc-ccccccc-----
Confidence 555555555443211 235555555555 344321 223445555555553 2222100
Q ss_pred EEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccC
Q 003270 446 SLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINC 525 (835)
Q Consensus 446 ~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~ 525 (835)
..++|+.|++++|. +.+ +. .+..+++|+.|++++|.+. +..|..+..+
T Consensus 230 ---------------~~~~L~~L~L~~n~-l~~----~~-----~l~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l 277 (597)
T 3oja_B 230 ---------------VNVELTILKLQHNN-LTD----TA-----WLLNYPGLVEVDLSYNELE-------KIMYHPFVKM 277 (597)
T ss_dssp ---------------CCSCCCEEECCSSC-CCC----CG-----GGGGCTTCSEEECCSSCCC-------EEESGGGTTC
T ss_pred ---------------cCCCCCEEECCCCC-CCC----Ch-----hhccCCCCCEEECCCCccC-------CCCHHHhcCc
Confidence 01344444444432 111 11 1566777777777777775 4556677777
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEE
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 605 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L 605 (835)
++|+.|++++| .++. ++..+..+++|+.|++++|..... +..+..+++|+.|++++|.+++++ +..+++|+.|
T Consensus 278 ~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L 350 (597)
T 3oja_B 278 QRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL 350 (597)
T ss_dssp SSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred cCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCCCCcc--CcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEE
Confidence 78888888877 4543 455556677788888887775532 556677778888888888777664 5567778888
Q ss_pred ecccccccchhhHHHH
Q 003270 606 KLQACKYLTNTSLESL 621 (835)
Q Consensus 606 ~l~~~~~l~~~~~~~l 621 (835)
++++|+ +.+.....+
T Consensus 351 ~l~~N~-~~~~~~~~~ 365 (597)
T 3oja_B 351 TLSHND-WDCNSLRAL 365 (597)
T ss_dssp ECCSSC-EEHHHHHHH
T ss_pred EeeCCC-CCChhHHHH
Confidence 888877 665554443
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=5.4e-24 Score=222.19 Aligned_cols=247 Identities=13% Similarity=0.134 Sum_probs=195.7
Q ss_pred HHHHHHhhcCCCC--ceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhh--HHHHHHhhCCcCcEEEcCC-cccC
Q 003270 62 IWQWRAASAHEDF--WRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL--LVMKAVSLLRNLEALTLGR-GQLG 136 (835)
Q Consensus 62 ~~~W~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~i~ 136 (835)
...|.. ..++|. |.+|.|+.... ..++++|++++ +.+.+ .++..+..+++|++|++++ |.+.
T Consensus 24 l~~W~~-~~~~C~~~w~gv~C~~~~~-----------~~~l~~L~L~~-~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~ 90 (313)
T 1ogq_A 24 LSSWLP-TTDCCNRTWLGVLCDTDTQ-----------TYRVNNLDLSG-LNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90 (313)
T ss_dssp GTTCCT-TSCTTTTCSTTEEECCSSS-----------CCCEEEEEEEC-CCCSSCEECCGGGGGCTTCSEEEEEEETTEE
T ss_pred ccCCCC-CCCCCcCCCcceEeCCCCC-----------CceEEEEECCC-CCccCCcccChhHhCCCCCCeeeCCCCCccc
Confidence 456853 456777 99999975431 24799999999 46776 6778999999999999995 9999
Q ss_pred hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccc-c---ccCCCCCcEEEecccchH----HHhh
Q 003270 137 DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-V---SIRCPQLEHLSLKRSNMA----QAVL 208 (835)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~---~~~l~~L~~L~l~~~~i~----~~~~ 208 (835)
+.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.. + ...+++|++|++++|.+. ..+.
T Consensus 91 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 9999999999999999999999998999999999999999999998863 2 346889999999988775 5667
Q ss_pred cCC-CCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCC
Q 003270 209 NCP-LLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPM 285 (835)
Q Consensus 209 ~~~-~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~ 285 (835)
.++ +|++|++++|. ++ +.+|..+..++ |++|++++|. +++..+..+. .+++|+.|++++|. ..+..+..+++
T Consensus 171 ~l~~~L~~L~L~~N~-l~-~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 171 SFSKLFTSMTISRNR-LT-GKIPPTFANLN-LAFVDLSRNM-LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp CCCTTCCEEECCSSE-EE-EECCGGGGGCC-CSEEECCSSE-EEECCGGGCC-TTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred hhhhcCcEEECcCCe-ee-ccCChHHhCCc-ccEEECcCCc-ccCcCCHHHh-cCCCCCEEECCCCceeeecCcccccCC
Confidence 777 88999998873 44 23456667776 8899998887 6655444444 78888888888886 33444667788
Q ss_pred CcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccc
Q 003270 286 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL 327 (835)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 327 (835)
|++|++++| .+.+..+..+..+++|++|++++|.+.+.+|.
T Consensus 246 L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 246 LNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 888888887 77777777788888888888888887776664
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=3.4e-21 Score=203.39 Aligned_cols=292 Identities=17% Similarity=0.125 Sum_probs=179.4
Q ss_pred CCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccc
Q 003270 264 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 341 (835)
Q Consensus 264 ~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~ 341 (835)
+++.++++++. .+|..+ .++++.|+++++ .+....+..++.+++|++|++++|.+.+..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEK-------------- 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGG--------------
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHh--------------
Confidence 45666666554 344333 256667777665 55555555666677777777777654332221
Q ss_pred cccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCC
Q 003270 342 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 421 (835)
Q Consensus 342 ~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 421 (835)
.+.++++|++|++++|.++..... ..++|++|++++ +.+++..+..+ ..++
T Consensus 97 ---------------~~~~l~~L~~L~L~~n~l~~l~~~----------~~~~L~~L~l~~-n~i~~~~~~~~---~~l~ 147 (332)
T 2ft3_A 97 ---------------AFSPLRKLQKLYISKNHLVEIPPN----------LPSSLVELRIHD-NRIRKVPKGVF---SGLR 147 (332)
T ss_dssp ---------------GSTTCTTCCEEECCSSCCCSCCSS----------CCTTCCEEECCS-SCCCCCCSGGG---SSCS
T ss_pred ---------------HhhCcCCCCEEECCCCcCCccCcc----------ccccCCEEECCC-CccCccCHhHh---CCCc
Confidence 244556666666666666533211 115777777777 46666554455 5667
Q ss_pred CccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccc
Q 003270 422 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 501 (835)
Q Consensus 422 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~ 501 (835)
+|++|+++++. ++.. +..|.. +..+ +|+.++
T Consensus 148 ~L~~L~l~~n~-l~~~------------------------------------------~~~~~~-----~~~l-~L~~L~ 178 (332)
T 2ft3_A 148 NMNCIEMGGNP-LENS------------------------------------------GFEPGA-----FDGL-KLNYLR 178 (332)
T ss_dssp SCCEEECCSCC-CBGG------------------------------------------GSCTTS-----SCSC-CCSCCB
T ss_pred cCCEEECCCCc-cccC------------------------------------------CCCccc-----ccCC-ccCEEE
Confidence 77777777664 3211 011111 3333 566666
Q ss_pred cccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccce
Q 003270 502 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 581 (835)
Q Consensus 502 l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 581 (835)
+++|.+ ..+|..+. ++|++|++++| .+.+ ..+..+..+++|++|++++|..... .+..+..+++|++
T Consensus 179 l~~n~l--------~~l~~~~~--~~L~~L~l~~n-~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 179 ISEAKL--------TGIPKDLP--ETLNELHLDHN-KIQA-IELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRE 245 (332)
T ss_dssp CCSSBC--------SSCCSSSC--SSCSCCBCCSS-CCCC-CCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCE
T ss_pred CcCCCC--------CccCcccc--CCCCEEECCCC-cCCc-cCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCE
Confidence 666665 33454332 67777788777 3432 2234566777888888888765443 2456788888888
Q ss_pred eeecCccccCchHHHhccccccEEecccccccchhhHHHHHhc---CCCCCccEEeCCCcccchH-HHHHHHhhCCCccE
Q 003270 582 LDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK---GSLPALQELDLSYGTLCQS-AIEELLAYCTHLTH 657 (835)
Q Consensus 582 L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~n~~~~~-~~~~~l~~~~~L~~ 657 (835)
|++++|.++.+|..+..+++|++|++++|+ +++.....+... ...+.|+.|++++|.+... ..+..|..+++|+.
T Consensus 246 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp EECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred EECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence 888888888888888888888888888887 777655544211 1246788899998887631 34566788888999
Q ss_pred EEccCCC
Q 003270 658 VSLNGCG 664 (835)
Q Consensus 658 L~l~~~~ 664 (835)
+++++|.
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 8888874
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=8e-21 Score=200.44 Aligned_cols=292 Identities=17% Similarity=0.129 Sum_probs=169.2
Q ss_pred CCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccc
Q 003270 264 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 341 (835)
Q Consensus 264 ~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~ 341 (835)
+++.++++++. .+|..+ .++++.|+++++ .+.+..+..++.+++|++|++++|.+.+..|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPG-------------- 94 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--------------
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHH--------------
Confidence 34555555443 333322 245666666665 55555445566666677777666654432222
Q ss_pred cccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCC
Q 003270 342 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 421 (835)
Q Consensus 342 ~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 421 (835)
.+..+++|++|++++|.++..... ..++|++|++++ +.+++..+..+ ..++
T Consensus 95 ---------------~~~~l~~L~~L~Ls~n~l~~l~~~----------~~~~L~~L~l~~-n~l~~~~~~~~---~~l~ 145 (330)
T 1xku_A 95 ---------------AFAPLVKLERLYLSKNQLKELPEK----------MPKTLQELRVHE-NEITKVRKSVF---NGLN 145 (330)
T ss_dssp ---------------TTTTCTTCCEEECCSSCCSBCCSS----------CCTTCCEEECCS-SCCCBBCHHHH---TTCT
T ss_pred ---------------HhcCCCCCCEEECCCCcCCccChh----------hcccccEEECCC-CcccccCHhHh---cCCc
Confidence 133445555555555555432111 124677777777 46666555555 5666
Q ss_pred CccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccc
Q 003270 422 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 501 (835)
Q Consensus 422 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~ 501 (835)
+|+.|+++++. ++... ..+.. +..+++|+.++
T Consensus 146 ~L~~L~l~~n~-l~~~~------------------------------------------~~~~~-----~~~l~~L~~L~ 177 (330)
T 1xku_A 146 QMIVVELGTNP-LKSSG------------------------------------------IENGA-----FQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSC-CCGGG------------------------------------------BCTTG-----GGGCTTCCEEE
T ss_pred cccEEECCCCc-CCccC------------------------------------------cChhh-----ccCCCCcCEEE
Confidence 77777776664 22100 00111 44455566666
Q ss_pred cccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccce
Q 003270 502 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 581 (835)
Q Consensus 502 l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 581 (835)
+++|.+ ..+|..+ .++|++|++++| .+++ ..+..+..+++|++|++++|..... .+..+..+++|++
T Consensus 178 l~~n~l--------~~l~~~~--~~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 244 (330)
T 1xku_A 178 IADTNI--------TTIPQGL--PPSLTELHLDGN-KITK-VDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRE 244 (330)
T ss_dssp CCSSCC--------CSCCSSC--CTTCSEEECTTS-CCCE-ECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCE
T ss_pred CCCCcc--------ccCCccc--cccCCEEECCCC-cCCc-cCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCE
Confidence 665555 3344333 267777777776 3433 2344566777777777777764432 2446777888888
Q ss_pred eeecCccccCchHHHhccccccEEecccccccchhhHHHHHhc---CCCCCccEEeCCCcccchHH-HHHHHhhCCCccE
Q 003270 582 LDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK---GSLPALQELDLSYGTLCQSA-IEELLAYCTHLTH 657 (835)
Q Consensus 582 L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~n~~~~~~-~~~~l~~~~~L~~ 657 (835)
|++++|.++.+|..+..+++|++|++++|+ +++.....+... ...+.|+.+++++|.+.... .+..|..+.+++.
T Consensus 245 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 888888888887777788888888888887 776655443211 12467788888888775422 3456777888888
Q ss_pred EEccCC
Q 003270 658 VSLNGC 663 (835)
Q Consensus 658 L~l~~~ 663 (835)
+++++|
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 888776
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=4.2e-20 Score=194.87 Aligned_cols=267 Identities=12% Similarity=0.096 Sum_probs=154.0
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccC-CCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~L~~L~l~~~ 201 (835)
+++++|++++|.+++..+..|+.+++|++|++++|.+++..|..+.++++|++|++++|.+..+... .++|++|++++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 5677788887777776666777788888888888877766677777777788888877777655432 356777777766
Q ss_pred chH----HHhhcCCCCcEEeecCCCCCCH-HHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--
Q 003270 202 NMA----QAVLNCPLLHLLDIASCHKLSD-AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 274 (835)
Q Consensus 202 ~i~----~~~~~~~~L~~L~l~~~~~l~~-~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-- 274 (835)
.+. ..+..+++|++|++++|. +.. +..+..+.++++|++|++++|. ++. .+.. ..++|++|++++|.
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-l~~~---~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITT-IPQG---LPPSLTELHLDGNKIT 205 (330)
T ss_dssp CCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCS-CCSS---CCTTCSEEECTTSCCC
T ss_pred cccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-ccc-CCcc---ccccCCEEECCCCcCC
Confidence 554 446667777777777763 332 1223445666777777777766 442 1111 12456666666554
Q ss_pred -CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccc
Q 003270 275 -NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMML 353 (835)
Q Consensus 275 -~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l 353 (835)
..+..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+. .+|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-------------------------- 257 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV-KVPG-------------------------- 257 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS-SCCT--------------------------
T ss_pred ccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc-cCCh--------------------------
Confidence 11334445555555555554 444444444555555555555555432 2221
Q ss_pred ceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCch--hhhhhccCCCCCCCccEEEecCC
Q 003270 354 SSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN--SVCEVFSDGGGCPMLKSLVLDNC 431 (835)
Q Consensus 354 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~L~~L~l~~~ 431 (835)
.+..+++|++|++++|.+++.....+..... ....+.++.+++++ |.+.. ..+..+ ..+++++.++++++
T Consensus 258 ---~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~-~~~~~~l~~l~l~~-N~~~~~~i~~~~f---~~~~~l~~l~L~~N 329 (330)
T 1xku_A 258 ---GLADHKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSLFS-NPVQYWEIQPSTF---RCVYVRAAVQLGNY 329 (330)
T ss_dssp ---TTTTCSSCCEEECCSSCCCCCCTTSSSCSSC-CTTSCCCSEEECCS-SSSCGGGSCGGGG---TTCCCGGGEEC---
T ss_pred ---hhccCCCcCEEECCCCcCCccChhhcCCccc-ccccccccceEeec-CcccccccCcccc---ccccceeEEEeccc
Confidence 2445666677777777766654332221110 00235677777777 45543 233444 55677777777665
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.6e-21 Score=202.98 Aligned_cols=250 Identities=16% Similarity=0.179 Sum_probs=167.8
Q ss_pred HHHHHH---hhcCCCCceeeccCCCCCCHHHHHHHH--hcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccC
Q 003270 62 IWQWRA---ASAHEDFWRCLNFENRKISVEQFEDVC--QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLG 136 (835)
Q Consensus 62 ~~~W~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 136 (835)
...|.. .....+.|.++.+. .+...+ ...++++.|++++ +.+. .++..+..+++|++|++++|.+.
T Consensus 47 ~~~w~~~~~~~~~~~~~~g~~~~-------~~~~~l~~~~~~~l~~L~L~~-n~l~-~lp~~l~~l~~L~~L~L~~n~l~ 117 (328)
T 4fcg_A 47 HSAWRQANSNNPQIETRTGRALK-------ATADLLEDATQPGRVALELRS-VPLP-QFPDQAFRLSHLQHMTIDAAGLM 117 (328)
T ss_dssp HHHHHHHTTTCTTSCCSHHHHHH-------HHHHHHHHHTSTTCCEEEEES-SCCS-SCCSCGGGGTTCSEEEEESSCCC
T ss_pred hhhhcccccccccccccCCcchh-------hhHHHHhcccccceeEEEccC-CCch-hcChhhhhCCCCCEEECCCCCcc
Confidence 356762 33456778876653 222222 3467899999999 4566 45667888999999999999998
Q ss_pred hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccc-cccCCCCCcEEEecccchHHHhhcCCCCcE
Q 003270 137 DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VSIRCPQLEHLSLKRSNMAQAVLNCPLLHL 215 (835)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~ 215 (835)
.+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+.. +... +.... +...+..+++|++
T Consensus 118 -~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~---~~~~~-----~~~~~~~l~~L~~ 187 (328)
T 4fcg_A 118 -ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP---LASTD-----ASGEHQGLVNLQS 187 (328)
T ss_dssp -CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC---SEEEC------CCCEEESTTCCE
T ss_pred -chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh---Hhhcc-----chhhhccCCCCCE
Confidence 78888999999999999999987 788888889999999998875432 2211 11111 1122344566666
Q ss_pred EeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecC
Q 003270 216 LDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLH 292 (835)
Q Consensus 216 L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~ 292 (835)
|++++| .++ .+|..++++++|++|++++|. +++ .+..+. .+++|++|++++|. .+|..++.+++|++|+++
T Consensus 188 L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N~-l~~-l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 188 LRLEWT-GIR--SLPASIANLQNLKSLKIRNSP-LSA-LGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp EEEEEE-CCC--CCCGGGGGCTTCCEEEEESSC-CCC-CCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred EECcCC-CcC--cchHhhcCCCCCCEEEccCCC-CCc-Cchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 666665 344 344556666666666666666 442 222333 66666677766655 456667777788888887
Q ss_pred CCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeec
Q 003270 293 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 337 (835)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~ 337 (835)
+| .+.+..+..+..+++|++|++++|...+.+|..+.+++.+..
T Consensus 262 ~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 262 DC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 76 555666667778888888888888888888877665555443
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=3.2e-21 Score=201.09 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=110.1
Q ss_pred CcCcEEEcCCcccCh--hhHHhhcCCCCCCEEEecC-CCCCcccccccccCCcccEEeccCccccc-c---ccCCCCCcE
Q 003270 123 RNLEALTLGRGQLGD--AFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMR-V---SIRCPQLEH 195 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~---~~~l~~L~~ 195 (835)
.+++.|++++|.+.+ .+|..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.. + ..++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 99988999999999999999999988762 2 235666777
Q ss_pred EEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCC-CCCEEeCCCCCCCChHHHHHHHHhCCCCcEEec
Q 003270 196 LSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP-QLESLDMSNCSCVSDESLREIALSCANLRILNS 270 (835)
Q Consensus 196 L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~-~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l 270 (835)
|++++|.+. ..+..+++|++|++++| .++ +.+|..+.+++ +|++|++++|. +++..+..+. .++ |+.|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~-~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~-~l~-L~~L~L 204 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RIS-GAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFA-NLN-LAFVDL 204 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCE-EECCGGGGCCCTTCCEEECCSSE-EEEECCGGGG-GCC-CSEEEC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC-ccc-CcCCHHHhhhhhcCcEEECcCCe-eeccCChHHh-CCc-ccEEEC
Confidence 777666554 44556666666666665 233 12344455555 66666666665 4433333333 333 555555
Q ss_pred CCCC---CCCccccCCCCCcEEecCCC
Q 003270 271 SYCP---NISLESVRLPMLTVLQLHSC 294 (835)
Q Consensus 271 ~~~~---~l~~~~~~~~~L~~L~l~~~ 294 (835)
++|. ..+..+..+++|++|++++|
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 5553 23333344444444444443
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=6.4e-20 Score=193.57 Aligned_cols=267 Identities=14% Similarity=0.139 Sum_probs=172.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccC-CCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~L~~L~l~~~ 201 (835)
++|++|++++|.+.+..+.+|..+++|++|++++|.+++..|..+.++++|++|++++|.+..+... .++|++|++++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 5677777777777766666777777777777777777666666777777777777777777655432 367777777777
Q ss_pred chH----HHhhcCCCCcEEeecCCCCCCHH-HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--
Q 003270 202 NMA----QAVLNCPLLHLLDIASCHKLSDA-AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 274 (835)
Q Consensus 202 ~i~----~~~~~~~~L~~L~l~~~~~l~~~-~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-- 274 (835)
.+. ..+..+++|++|++++| .++.. ..+..+..+ +|++|++++|. +++ .+.. ..++|++|++++|.
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~-l~~~---~~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK-LTG-IPKD---LPETLNELHLDHNKIQ 206 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB-CSS-CCSS---SCSSCSCCBCCSSCCC
T ss_pred ccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC-CCc-cCcc---ccCCCCEEECCCCcCC
Confidence 665 34677888888888887 35421 223344555 88888888887 553 1211 23578888888776
Q ss_pred CCC-ccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccc
Q 003270 275 NIS-LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMML 353 (835)
Q Consensus 275 ~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l 353 (835)
.++ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+. .+|.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-------------------------- 258 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLS-RVPA-------------------------- 258 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT--------------------------
T ss_pred ccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCe-ecCh--------------------------
Confidence 233 45667788888888876 666666666777788888888877643 3332
Q ss_pred ceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCc--hhhhhhccCCCCCCCccEEEecCC
Q 003270 354 SSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT--NSVCEVFSDGGGCPMLKSLVLDNC 431 (835)
Q Consensus 354 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~L~~L~l~~~ 431 (835)
.+..+++|++|++++|.+++.....+.... .....+.|+.|++++| .+. +..+..+ ..+++|+.++++++
T Consensus 259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~N-~~~~~~~~~~~~---~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVG-FGVKRAYYNGISLFNN-PVPYWEVQPATF---RCVTDRLAIQFGNY 330 (332)
T ss_dssp ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSS-CCSSSCCBSEEECCSS-SSCGGGSCGGGG---TTBCCSTTEEC---
T ss_pred ---hhhcCccCCEEECCCCCCCccChhHccccc-cccccccccceEeecC-cccccccCcccc---cccchhhhhhcccc
Confidence 144566777777777777765433222210 0002467888888884 555 3444555 67788888888776
Q ss_pred C
Q 003270 432 E 432 (835)
Q Consensus 432 ~ 432 (835)
.
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=2.8e-20 Score=194.62 Aligned_cols=263 Identities=17% Similarity=0.180 Sum_probs=187.7
Q ss_pred eeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEecc
Q 003270 100 ATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 179 (835)
Q Consensus 100 l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 179 (835)
++..+++. ..+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~-~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCT-TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccc-cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 55556666 45666666777788899999999999998888899999999999999999876554 7889999999999
Q ss_pred CccccccccCCCCCcEEEecccchHH-HhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 180 KCRVMRVSIRCPQLEHLSLKRSNMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
+|.+..+. ..++|++|++++|.+.. ....+++|++|++++| .++. ..+..+..+++|++|++++|. +++..+..+
T Consensus 89 ~n~l~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 164 (317)
T 3o53_A 89 NNYVQELL-VGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL 164 (317)
T ss_dssp SSEEEEEE-ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCS-GGGBCTGGGSSEEEEECTTSC-CCEEEGGGG
T ss_pred CCcccccc-CCCCcCEEECCCCccCCcCccccCCCCEEECCCC-CCCC-ccchhhhccCCCCEEECCCCC-CCcccHHHH
Confidence 99988776 55899999999998872 2345788999999998 4553 223356778899999999998 776555555
Q ss_pred HHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceee
Q 003270 259 ALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR 336 (835)
Q Consensus 259 ~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 336 (835)
...+++|++|++++|. .+ .....+++|++|++++| .+.+.. ..+..+++|++|++++|.+. .+|.
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~--------- 231 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNNKLV-LIEK--------- 231 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTSCCC-EECT---------
T ss_pred hhccCcCCEEECCCCcCccc-ccccccccCCEEECCCC-cCCcch-hhhcccCcccEEECcCCccc-chhh---------
Confidence 5467889999998886 22 22334777888888776 555433 33667777777777777643 2221
Q ss_pred ccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCch
Q 003270 337 LVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 408 (835)
Q Consensus 337 ~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~ 408 (835)
.+..+++|+.+++++|.+... .+......++.|+.+++++++.+++
T Consensus 232 --------------------~~~~l~~L~~L~l~~N~~~~~------~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 232 --------------------ALRFSQNLEHFDLRGNGFHCG------TLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp --------------------TCCCCTTCCEEECTTCCCBHH------HHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred --------------------HhhcCCCCCEEEccCCCccCc------CHHHHHhccccceEEECCCchhccC
Confidence 134556777777777777621 2222233456667777665444444
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=188.05 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=114.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCccccc--ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCch
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSD--AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD 568 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~--~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 568 (835)
+.++++|+.+++++|.+ ..+|. .+..+++|++|++++|..+. ...+..+..+++|++|++++|...+.
T Consensus 120 ~~~l~~L~~L~L~~n~l--------~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~- 189 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPY--------KTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSY- 189 (353)
T ss_dssp HTTCTTCSEEECTTCCC--------SSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEE-
T ss_pred hCCCccCCEEECCCCCC--------cccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCcc-
Confidence 45667777777777766 44444 56778888888888874333 22345577788888888888875443
Q ss_pred hhHhhhhccccceeeecCccccCchHH-HhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchH---H
Q 003270 569 GLYSLRSLQNLTMLDLSYTFLTNLEPV-FESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS---A 644 (835)
Q Consensus 569 ~~~~~~~l~~L~~L~Ls~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~---~ 644 (835)
.+..+..+++|++|++++|.+..++.. +..+++|++|++++|. +++.....+......+.++.++++++.+++. .
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhh
Confidence 366788888888888888888877764 4567888888888887 7765544443334567788888888877763 3
Q ss_pred HHHHHhhCCCccEEEccCCC
Q 003270 645 IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l~~~~ 664 (835)
++..+..+++|++|++++|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCC
Confidence 56778888899999998884
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=3.7e-19 Score=189.46 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=139.7
Q ss_pred cCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccch
Q 003270 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 203 (835)
Q Consensus 124 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i 203 (835)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+..+.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------- 116 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS---------------- 116 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC----------------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC----------------
Confidence 4555555555555444445555555555555555555444444554555555555544443221
Q ss_pred HHHhhcCCCCcEEeecCCCCCCHHHHHH--HHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCc
Q 003270 204 AQAVLNCPLLHLLDIASCHKLSDAAIRL--AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISL 278 (835)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~~l~~~~l~~--~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~ 278 (835)
...+..+++|++|++++| .++ .++. .+.++++|++|++++|..++...+..+. .+++|++|++++|. ..+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n-~l~--~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN-PYK--TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp HHHHTTCTTCSEEECTTC-CCS--SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTT
T ss_pred HhHhCCCccCCEEECCCC-CCc--ccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHH
Confidence 012333344444444443 122 1111 2334444444444444223222222222 45555555555554 2345
Q ss_pred cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeee
Q 003270 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMV 358 (835)
Q Consensus 279 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l 358 (835)
.+..+++|++|+++++ .+.......+..+++|++|++++|.+.+..+..++. .
T Consensus 193 ~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------~ 245 (353)
T 2z80_A 193 SLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------------G 245 (353)
T ss_dssp TTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------------
T ss_pred HHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCcccccccccccc--------------------------c
Confidence 5667788888888886 565555555666899999999998765533222111 2
Q ss_pred ccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 359 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 359 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
..+..++.+++..+.+++... ..+......+++|++|++++ +.++......+ ..+++|++|++++|+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l---~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~---~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESL---FQVMKLLNQISGLLELEFSR-NQLKSVPDGIF---DRLTSLQKIWLHTNP 312 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHH---HHHHHHHHTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSSC
T ss_pred cccchhhccccccccccCcch---hhhHHHHhcccCCCEEECCC-CCCCccCHHHH---hcCCCCCEEEeeCCC
Confidence 234556667777777766322 22333334678999999999 58885544444 678999999999986
No 58
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=1.9e-18 Score=186.43 Aligned_cols=261 Identities=16% Similarity=0.088 Sum_probs=183.1
Q ss_pred cccccccccCCCcceEecccCCCCccchh---hhhhhcCCCccEEeccCCCCc--CchhhH-------hhhhccccceee
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCL---SATTTSCPLIESLILMSCQSI--GPDGLY-------SLRSLQNLTMLD 583 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~--~~~~~~-------~~~~l~~L~~L~ 583 (835)
..++..+..+++|++|++++| .+.+... ...+..+++|++|++++|... ....+. .+..+++|++|+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 456667778899999999998 5655432 334667899999999987432 222232 346889999999
Q ss_pred ecCccccC-----chHHHhccccccEEecccccccchhhHHHHHh-cCCC---------CCccEEeCCCcccchHHHH--
Q 003270 584 LSYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTSLESLYK-KGSL---------PALQELDLSYGTLCQSAIE-- 646 (835)
Q Consensus 584 Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~---------~~L~~L~l~~n~~~~~~~~-- 646 (835)
+++|.+.. ++..+..+++|++|++++|. +++..+..+.. +..+ ++|++|++++|++++..++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 99999986 67788999999999999998 87666655532 2333 8999999999999854565
Q ss_pred -HHHhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccC-
Q 003270 647 -ELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIP- 724 (835)
Q Consensus 647 -~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~- 724 (835)
..+..+++|++|++++|. +.+... .. .++
T Consensus 180 ~~~l~~~~~L~~L~L~~n~-l~~~g~-----------------------------------------------~~-l~~~ 210 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNG-IRPEGI-----------------------------------------------EH-LLLE 210 (386)
T ss_dssp HHHHHHCTTCCEEECCSSC-CCHHHH-----------------------------------------------HH-HHHT
T ss_pred HHHHHhCCCcCEEECcCCC-CCHhHH-----------------------------------------------HH-HHHH
Confidence 567789999999999985 221100 00 012
Q ss_pred cccccCccceEeccCCCC-------ccccccccccccEEecccccchh----hhhh-----cCCccceeecccCcCChh-
Q 003270 725 PQARCFHLSSLNLSLSAN-------LKEVDVACFNLCFLNLSNCCSLE----TLKL-----DCPKLTSLFLQSCNIDEE- 787 (835)
Q Consensus 725 ~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~L~~L~l~~c~~l~----~l~~-----~~~~L~~L~l~~~~i~~~- 787 (835)
.+..+++|+.|+++++.- +......+++|++|++++|.--. .++. .+++|+.|+|++|.|++.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 445566777777776542 12223456788888888886211 1232 279999999999999843
Q ss_pred --HHHHHH-hcCCCcceeecccccCCCchH-HHHHHHhCCcchh
Q 003270 788 --GVESAI-TQCGMLETLDVRFCPKICSTS-MGRLRAACPSLKR 827 (835)
Q Consensus 788 --~l~~~~-~~~~~L~~l~l~~c~~l~~~~-~~~~~~~~p~l~~ 827 (835)
.+|..+ .++++|+.|++++|+.-.... +..+...+|+++.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence 367666 678999999999987544432 6777777777663
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-19 Score=188.72 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=37.7
Q ss_pred cCCccceeecccCcCChhHHHHHHhcCC-CcceeecccccCCCchHHHHHHHhCCcchhh
Q 003270 770 DCPKLTSLFLQSCNIDEEGVESAITQCG-MLETLDVRFCPKICSTSMGRLRAACPSLKRI 828 (835)
Q Consensus 770 ~~~~L~~L~l~~~~i~~~~l~~~~~~~~-~L~~l~l~~c~~l~~~~~~~~~~~~p~l~~l 828 (835)
.+++|++|++++|+++ ...|..+..++ +|++|++++|+.-+++....+.+-+...+.+
T Consensus 221 ~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~ 279 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279 (306)
T ss_dssp TCTTCCEEECTTSCCC-BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGG
T ss_pred CcccCCEeECCCCCCc-ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhh
Confidence 4577888888888775 33445566664 7888888888877777666555444444433
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.7e-19 Score=189.10 Aligned_cols=223 Identities=20% Similarity=0.258 Sum_probs=171.9
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecc
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 200 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~ 200 (835)
..++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+..+.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp------------- 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP------------- 143 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC-------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc-------------
Confidence 3588999999999998 67888888999999999999998 78888888888888888888776432
Q ss_pred cchHHHhhcCCCCcEEeecCCCCCCHHHHHHH---------HhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 201 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA---------ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 201 ~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~---------~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
..+..+++|++|++++|.... .+|.. +.++++|++|++++|. ++ ..+..+. .+++|++|+++
T Consensus 144 ----~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~-~l~~L~~L~L~ 214 (328)
T 4fcg_A 144 ----ASIASLNRLRELSIRACPELT--ELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIA-NLQNLKSLKIR 214 (328)
T ss_dssp ----GGGGGCTTCCEEEEEEETTCC--CCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGG-GCTTCCEEEEE
T ss_pred ----HHHhcCcCCCEEECCCCCCcc--ccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhc-CCCCCCEEEcc
Confidence 345556666666666653222 22333 3459999999999998 76 4445554 89999999999
Q ss_pred CCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccC---cccceeeccccccccch
Q 003270 272 YCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL---PRLQNIRLVHCRKFADL 346 (835)
Q Consensus 272 ~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~~~~~~~l~~l 346 (835)
+|. .++..+..+++|++|++++| .+.+..+..++.+++|++|++++|...+.+|..+ ++|+.|++.+|..+..+
T Consensus 215 ~N~l~~l~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 215 NSPLSALGPAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp SSCCCCCCGGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCCcCchhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 998 77888899999999999998 6777777888999999999999999999888653 45555555555433222
Q ss_pred hhcccccceeeeccCCCcceeeeccCcccc
Q 003270 347 NLRAMMLSSIMVSNCAALHRINITSNSLQK 376 (835)
Q Consensus 347 ~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~ 376 (835)
. . .+.++++++.+.+..+.+..
T Consensus 294 P------~--~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 294 P------S--LIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp C------G--GGGGSCTTCEEECCGGGSCC
T ss_pred c------H--HHhhccCceEEeCCHHHHHH
Confidence 1 1 57889999999998776544
No 61
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=4.9e-18 Score=179.75 Aligned_cols=255 Identities=16% Similarity=0.242 Sum_probs=151.2
Q ss_pred eeEEEccCCcchhhHHHHHHhhC--CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcc-cccccccCCcccEE
Q 003270 100 ATEVNIYGAPAIHLLVMKAVSLL--RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG-VQEIPINHDQLRRL 176 (835)
Q Consensus 100 l~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 176 (835)
.+.++++++ .+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 566666662 333 2344444 5666666666666655443 33566666666666665543 55555555555555
Q ss_pred eccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
++++|.+.. .....++.+++|++|++++|..+++.+++..+.++++|++|++++|..+++..+.
T Consensus 124 ~L~~~~l~~----------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 124 SLEGLRLSD----------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp ECTTCBCCH----------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred eCcCcccCH----------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 555444321 1124566778888888888766776667777778888888888888337766555
Q ss_pred HHHHhCC-CCcEEecCCCC-C-----CCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccC
Q 003270 257 EIALSCA-NLRILNSSYCP-N-----ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL 329 (835)
Q Consensus 257 ~~~~~~~-~L~~L~l~~~~-~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 329 (835)
.....++ +|++|++++|. . ++..+..+++|++|++++|..+++..+..++.+++|++|++++|.... +..+
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~ 265 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETL 265 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHH
Confidence 5445777 78888887773 2 233344667777777777643666666677777777777777774111 1000
Q ss_pred cccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchh
Q 003270 330 PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 409 (835)
Q Consensus 330 ~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 409 (835)
. .+.++++|+.|++++| ++. ..+..+. ..++.|++++ +.+++.
T Consensus 266 ~--------------------------~l~~~~~L~~L~l~~~-i~~------~~~~~l~---~~l~~L~l~~-n~l~~~ 308 (336)
T 2ast_B 266 L--------------------------ELGEIPTLKTLQVFGI-VPD------GTLQLLK---EALPHLQINC-SHFTTI 308 (336)
T ss_dssp G--------------------------GGGGCTTCCEEECTTS-SCT------TCHHHHH---HHSTTSEESC-CCSCCT
T ss_pred H--------------------------HHhcCCCCCEEeccCc-cCH------HHHHHHH---hhCcceEEec-ccCccc
Confidence 0 2456777777777776 332 2222222 2344455665 678776
Q ss_pred hhhhc
Q 003270 410 VCEVF 414 (835)
Q Consensus 410 ~~~~~ 414 (835)
.|..+
T Consensus 309 ~~~~~ 313 (336)
T 2ast_B 309 ARPTI 313 (336)
T ss_dssp TCSSC
T ss_pred cCCcc
Confidence 65544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=3e-19 Score=186.79 Aligned_cols=247 Identities=14% Similarity=0.135 Sum_probs=185.4
Q ss_pred eccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccc
Q 003270 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 437 (835)
Q Consensus 358 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 437 (835)
+..+++|++|++++|.+++..+..+. .+++|++|++++ +.+++..+ + ..+++|++|++++|. ++.+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~Ls~-n~l~~~~~--~---~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLA-------PFTKLELLNLSS-NVLYETLD--L---ESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHT-------TCTTCCEEECTT-SCCEEEEE--E---TTCTTCCEEECCSSE-EEEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhh-------CCCcCCEEECCC-CcCCcchh--h---hhcCCCCEEECcCCc-cccc
Confidence 34567888888888888775433222 457888888888 57776543 3 677888888888875 4332
Q ss_pred cccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcc
Q 003270 438 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 517 (835)
Q Consensus 438 ~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~ 517 (835)
+ ..++|+.++++++. +.. +....+++|+.+++++|.++ +.
T Consensus 96 ~----------------------~~~~L~~L~l~~n~-l~~----------~~~~~~~~L~~L~l~~N~l~-------~~ 135 (317)
T 3o53_A 96 L----------------------VGPSIETLHAANNN-ISR----------VSCSRGQGKKNIYLANNKIT-------ML 135 (317)
T ss_dssp E----------------------ECTTCCEEECCSSC-CSE----------EEECCCSSCEEEECCSSCCC-------SG
T ss_pred c----------------------CCCCcCEEECCCCc-cCC----------cCccccCCCCEEECCCCCCC-------Cc
Confidence 2 13667777777653 211 11344678999999999884 44
Q ss_pred cccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHh
Q 003270 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFE 597 (835)
Q Consensus 518 l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~ 597 (835)
.+..+..+++|++|++++| .+.+.........+++|++|++++|..... .....+++|++|++++|.++++|+.+.
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp GGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred cchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhhc
Confidence 4567888999999999998 566543444446789999999999986543 234458999999999999999988899
Q ss_pred ccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCc
Q 003270 598 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMH 667 (835)
Q Consensus 598 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 667 (835)
.+++|++|++++|+ ++.. +.. +..+++|+.|++++|.+....++..+..+++|+.+++.+|..+.
T Consensus 212 ~l~~L~~L~L~~N~-l~~l-~~~---~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 212 SAAGVTWISLRNNK-LVLI-EKA---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGTTCSEEECTTSC-CCEE-CTT---CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCcccEEECcCCc-ccch-hhH---hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 99999999999998 8754 332 47789999999999999954788999999999999999776543
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.2e-19 Score=189.30 Aligned_cols=242 Identities=17% Similarity=0.167 Sum_probs=165.2
Q ss_pred CCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChh--hHHhhcCCCCC
Q 003270 72 EDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA--FFHALADCSML 149 (835)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~L 149 (835)
.|.|+++++++...+. ++. ...+++++|++++ +.+....+..|..+++|++|++++|.++.. .+..+..+++|
T Consensus 6 ~C~~~~l~c~~~~l~~--ip~--~~~~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTS--VPT--GIPSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp EEETTEEECCSSCCSS--CCS--CCCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred eeCCCEEEcCCCCccc--CCC--CCCCCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 3568888887744321 010 1235799999998 466655445678899999999999988743 35667788999
Q ss_pred CEEEecCCCCCcccccccccCCcccEEeccCccccccc-----cCCCCCcEEEecccchH----HHhhcCCCCcEEeecC
Q 003270 150 KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIAS 220 (835)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~ 220 (835)
++|++++|.+. .++..+.++++|++|++++|.+..+. ..+++|++|++++|.+. ..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 99999999886 46666788899999999988876542 35778888888887665 4466778888888887
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCC-ccccCCCCCcEEecCCCCCC
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS-LESVRLPMLTVLQLHSCEGI 297 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~-~~~~~~~~L~~L~l~~~~~~ 297 (835)
| .+.+..++..+..+++|++|++++|. +++..+..+. .+++|++|++++|. .++ ..+..+++|++|++++| .+
T Consensus 160 n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l 235 (306)
T 2z66_A 160 N-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HI 235 (306)
T ss_dssp C-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CC
T ss_pred C-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CC
Confidence 7 34432345566777788888888877 6654444444 66777777777775 222 23456667777777765 56
Q ss_pred ChhhHHHhhhc-cCccEEEccCCCccc
Q 003270 298 TSASMAAISHS-YMLEVLELDNCNLLT 323 (835)
Q Consensus 298 ~~~~~~~l~~~-~~L~~L~l~~~~~~~ 323 (835)
.+..+..+..+ ++|++|++++|++..
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cccCHHHHHhhhccCCEEEccCCCeec
Confidence 55555555555 366777776666543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.8e-18 Score=189.20 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=106.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.++ ...+..+..+++|++|++++|..+.. .-+..+..+++|++|++++|.....
T Consensus 143 ~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~--- 211 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKDM--- 211 (452)
T ss_dssp SSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCTTCCEEECTTSCCSSC---
T ss_pred hcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCCCccc-cChhhccCCCCCCEEECCCCccccc---
Confidence 455667777777777663 22223566777777777777654432 1223466777777888777765432
Q ss_pred HhhhhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.++++ |..|.++++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..+
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~ 286 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAF---DGLASLVELNLAHNNLSS-LPHDLF 286 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCTTSS
T ss_pred ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHh---cCCCCCCEEECCCCcCCc-cChHHh
Confidence 3566777888888888887775 4477777888888888877 766655443 667778888888887765 344556
Q ss_pred hhCCCccEEEccCCCC
Q 003270 650 AYCTHLTHVSLNGCGN 665 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~ 665 (835)
..+++|++|++++|+-
T Consensus 287 ~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred ccccCCCEEEccCCCc
Confidence 6777888888887763
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=188.89 Aligned_cols=159 Identities=21% Similarity=0.212 Sum_probs=113.2
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.++ ...+..+..+++|++|++++|..+.. ..+..+..+++|++|++++|.....
T Consensus 132 ~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~--- 200 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIE-------SIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLREI--- 200 (440)
T ss_dssp SCSCSSCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSCCSSC---
T ss_pred hhccccCceeeCCCCccc-------ccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCcCccc---
Confidence 556677777777777763 22233567778888888887654432 2223567788888888888875532
Q ss_pred HhhhhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.++++ +..|.++++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..|
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~ 275 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAF---DNLQSLVEINLAHNNLTL-LPHDLF 275 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSS---TTCTTCCEEECTTSCCCC-CCTTTT
T ss_pred cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhh---cCCCCCCEEECCCCCCCc-cChhHh
Confidence 3577788888888888888875 4578888888888888887 776655443 677888888888888876 345566
Q ss_pred hhCCCccEEEccCCCC
Q 003270 650 AYCTHLTHVSLNGCGN 665 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~ 665 (835)
..+++|++|++++|+-
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 7788888888888774
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=4.4e-18 Score=175.26 Aligned_cols=135 Identities=21% Similarity=0.160 Sum_probs=65.9
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL 600 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~ 600 (835)
+..+++|++|++++| .++. ..+..+..+++|++|++++|..... .+..+..+++|++|++++|.+++++. .+..++
T Consensus 101 ~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRC-GLQE-LGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hcCCcCCCEEECCCC-cCCE-ECHhHhhCCcCCCEEECCCCccccc-CHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 344444444444444 2221 1123344444555555554443221 12334555555555555555555443 355555
Q ss_pred cccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 601 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+|++|++++|. +++..+..+ ..+++|+.|++++|++++ ..+..+..+++|++|++++|+
T Consensus 178 ~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHVHPHAF---RDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCc-ccccCHhHc---cCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCC
Confidence 55555555555 554433332 445555666666655554 333445555566666666554
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=1.3e-17 Score=188.29 Aligned_cols=235 Identities=20% Similarity=0.109 Sum_probs=111.8
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++|+.|++++|.+ ..+|. .+++|++|++++| .++. ++. .+++|++|++++|...... .
T Consensus 61 ~~L~~L~L~~N~l--------~~lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~l~~l~--~--- 118 (622)
T 3g06_A 61 AHITTLVIPDNNL--------TSLPA---LPPELRTLEVSGN-QLTS--LPV---LPPGLLELSIFSNPLTHLP--A--- 118 (622)
T ss_dssp TTCSEEEECSCCC--------SCCCC---CCTTCCEEEECSC-CCSC--CCC---CCTTCCEEEECSCCCCCCC--C---
T ss_pred CCCcEEEecCCCC--------CCCCC---cCCCCCEEEcCCC-cCCc--CCC---CCCCCCEEECcCCcCCCCC--C---
Confidence 4455555555554 33333 3455566666655 2332 332 4555666666655533321 1
Q ss_pred hccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC
Q 003270 575 SLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 654 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~ 654 (835)
.+++|+.|++++|.++.+|.. +++|++|++++|. +++.. ..+++|+.|++++|.++. ++ ..+++
T Consensus 119 ~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~-------~~~~~L~~L~L~~N~l~~--l~---~~~~~ 182 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLP-------ALPSELCKLWAYNNQLTS--LP---MLPSG 182 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSCCSC--CC---CCCTT
T ss_pred CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcC-------CccCCCCEEECCCCCCCC--Cc---ccCCC
Confidence 345566666666665555442 3556666666654 44321 124455666666665554 22 33455
Q ss_pred ccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccce
Q 003270 655 LTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSS 734 (835)
Q Consensus 655 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~ 734 (835)
|+.|++++|. +..++. . ...|+.|++.++ .++. +|. .+++|+.
T Consensus 183 L~~L~Ls~N~-l~~l~~-----~--------------------------~~~L~~L~L~~N-~l~~--l~~--~~~~L~~ 225 (622)
T 3g06_A 183 LQELSVSDNQ-LASLPT-----L--------------------------PSELYKLWAYNN-RLTS--LPA--LPSGLKE 225 (622)
T ss_dssp CCEEECCSSC-CSCCCC-----C--------------------------CTTCCEEECCSS-CCSS--CCC--CCTTCCE
T ss_pred CcEEECCCCC-CCCCCC-----c--------------------------cchhhEEECcCC-cccc--cCC--CCCCCCE
Confidence 6666665553 211110 0 122444444443 2222 121 1244555
Q ss_pred EeccCCCCccccccccccccEEecccccchhhhhhcCCccceeecccCcCChhHHHHHHhcCCCcceeeccccc
Q 003270 735 LNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCP 808 (835)
Q Consensus 735 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~ 808 (835)
|+++++ .++.+...+++|+.|++++| .++.+|..+++|+.|++++|.|+ .+|..+.++++|+.|++++|+
T Consensus 226 L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 226 LIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred EEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCC
Confidence 555543 33333334455555555555 34445544555555555555553 344455555555555555554
No 68
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=1.2e-17 Score=180.29 Aligned_cols=232 Identities=19% Similarity=0.222 Sum_probs=169.1
Q ss_pred HHHHHhcCCCeeEEEccCCcchhhHHHH----HHhhCCcCcEEEcCCcc---cChhhHHh-------hcCCCCCCEEEec
Q 003270 90 FEDVCQRYPNATEVNIYGAPAIHLLVMK----AVSLLRNLEALTLGRGQ---LGDAFFHA-------LADCSMLKSLNVN 155 (835)
Q Consensus 90 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~---i~~~~~~~-------l~~~~~L~~L~l~ 155 (835)
+...++.++++++|+++++ .+....+. .+..+++|++|++++|. +.+.+|.. +..+++|++|+++
T Consensus 24 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3455678889999999994 66665444 36688999999999864 44444544 4788999999999
Q ss_pred CCCCCc----ccccccccCCcccEEeccCcccccc-----cc---CC---------CCCcEEEecccchH--------HH
Q 003270 156 DATLGN----GVQEIPINHDQLRRLEITKCRVMRV-----SI---RC---------PQLEHLSLKRSNMA--------QA 206 (835)
Q Consensus 156 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~-----~~---~l---------~~L~~L~l~~~~i~--------~~ 206 (835)
+|.+++ .++..+..+++|++|++++|.+... .. .+ ++|++|++++|.+. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999887 4777788899999999999987532 11 22 88999999888765 35
Q ss_pred hhcCCCCcEEeecCCCCCCHHHHH---H-HHhcCCCCCEEeCCCCCCCChHHHHHH---HHhCCCCcEEecCCCCC----
Q 003270 207 VLNCPLLHLLDIASCHKLSDAAIR---L-AATSCPQLESLDMSNCSCVSDESLREI---ALSCANLRILNSSYCPN---- 275 (835)
Q Consensus 207 ~~~~~~L~~L~l~~~~~l~~~~l~---~-~~~~~~~L~~L~L~~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~~---- 275 (835)
+..+++|++|++++| .+++.++. . .+.++++|++|+|++|. +++.+...+ ...+++|+.|++++|.-
T Consensus 183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 667889999999988 57765522 2 56688899999999988 764332222 23778899999988861
Q ss_pred ---CCccc--cCCCCCcEEecCCCCCCCh----hhHHHh-hhccCccEEEccCCCccccc
Q 003270 276 ---ISLES--VRLPMLTVLQLHSCEGITS----ASMAAI-SHSYMLEVLELDNCNLLTSV 325 (835)
Q Consensus 276 ---l~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~~~ 325 (835)
++..+ +.+++|++|++++| .+.+ ..+..+ .++++|++|++++|.+.+..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 23333 34788888888887 7777 355555 45788889998888876544
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.4e-18 Score=181.26 Aligned_cols=214 Identities=17% Similarity=0.157 Sum_probs=143.5
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccC-hhhHHhhc-------CCCCCCEEEecCCCCCccccccc--c
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLG-DAFFHALA-------DCSMLKSLNVNDATLGNGVQEIP--I 168 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~--~ 168 (835)
+++.+++++ +.+ .+|..+... |+.|++++|.+. ..++..+. .+++|++|++++|.+++.+|..+ .
T Consensus 44 ~L~~l~l~~-n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRV-DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHC-CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeecc-ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 455556666 234 234444433 777777777773 33444443 67888888888888887777755 7
Q ss_pred cCCcccEEeccCcccccccc---CC-----CCCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHH--h
Q 003270 169 NHDQLRRLEITKCRVMRVSI---RC-----PQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAA--T 234 (835)
Q Consensus 169 ~l~~L~~L~l~~~~~~~~~~---~l-----~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~--~ 234 (835)
.+++|++|++++|.+..... .+ ++|++|++++|.+. ..++.+++|++|++++|.......++..+ .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 78888888888888765421 23 88899999888776 46778999999999998533323345555 8
Q ss_pred cCCCCCEEeCCCCCCCCh--HHHHHHHHhCCCCcEEecCCCC--CCC--ccccCCCCCcEEecCCCCCCChhhHHHhhhc
Q 003270 235 SCPQLESLDMSNCSCVSD--ESLREIALSCANLRILNSSYCP--NIS--LESVRLPMLTVLQLHSCEGITSASMAAISHS 308 (835)
Q Consensus 235 ~~~~L~~L~L~~~~~l~~--~~~~~~~~~~~~L~~L~l~~~~--~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 308 (835)
++++|++|++++|. ++. ..+..+...+++|++|++++|. ..+ ..+..+++|++|++++| .++ ..+..+.
T Consensus 199 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~-- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK-QVPKGLP-- 273 (312)
T ss_dssp SCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCS-SCCSSCC--
T ss_pred cCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccC-hhhhhcc--
Confidence 89999999999998 773 3444555578999999999986 212 23345667777777775 444 2233333
Q ss_pred cCccEEEccCCCcc
Q 003270 309 YMLEVLELDNCNLL 322 (835)
Q Consensus 309 ~~L~~L~l~~~~~~ 322 (835)
++|++|++++|.+.
T Consensus 274 ~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 274 AKLSVLDLSYNRLD 287 (312)
T ss_dssp SEEEEEECCSSCCC
T ss_pred CCceEEECCCCCCC
Confidence 56666666666543
No 70
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=1.6e-17 Score=177.27 Aligned_cols=260 Identities=16% Similarity=0.114 Sum_probs=128.2
Q ss_pred EccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhH----HhhcCCC-CCCEEEecCCCCCcccccccccC-----Ccc
Q 003270 104 NIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFF----HALADCS-MLKSLNVNDATLGNGVQEIPINH-----DQL 173 (835)
Q Consensus 104 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 173 (835)
+++. +.+.+.++..+...++|++|++++|.+++..+ +++..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 4 ~ls~-n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTL-HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCC-CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccc-ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444 34555555555555556666666666665544 5555666 66666666666655444333332 555
Q ss_pred cEEeccCccccccc--------cCC-CCCcEEEecccchH--------HHhhc-CCCCcEEeecCCCCCCH---HHHHHH
Q 003270 174 RRLEITKCRVMRVS--------IRC-PQLEHLSLKRSNMA--------QAVLN-CPLLHLLDIASCHKLSD---AAIRLA 232 (835)
Q Consensus 174 ~~L~l~~~~~~~~~--------~~l-~~L~~L~l~~~~i~--------~~~~~-~~~L~~L~l~~~~~l~~---~~l~~~ 232 (835)
++|++++|.+.... ..+ ++|++|++++|.+. ..+.. .++|++|++++| .+++ ..++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH
Confidence 55555555544321 011 34444444444433 11222 235555555554 2332 122333
Q ss_pred HhcCC-CCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCC-CCCcEEecCCCCCCChh----hHHHhh
Q 003270 233 ATSCP-QLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL-PMLTVLQLHSCEGITSA----SMAAIS 306 (835)
Q Consensus 233 ~~~~~-~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~l~ 306 (835)
+..++ +|++|++++|. +++..+..++. .+..+ ++|++|++++| .+.+. .+..+.
T Consensus 162 l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~------------------~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN-LASKNCAELAK------------------FLASIPASVTSLDLSAN-LLGLKSYAELAYIFS 221 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHH------------------HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHH
T ss_pred HhcCCccccEeeecCCC-CchhhHHHHHH------------------HHHhCCCCCCEEECCCC-CCChhHHHHHHHHHh
Confidence 33333 55555555554 44333322221 11122 24444444443 44443 233444
Q ss_pred h-ccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhh
Q 003270 307 H-SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENL 385 (835)
Q Consensus 307 ~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 385 (835)
. .++|++|++++|.+.+..+..+.. .+..+++|+.|++++|.+.+........+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------------~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKL-------------------------LKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHH-------------------------TTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHH-------------------------HHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 4 347888888877644322111100 13456677777777777665544444444
Q ss_pred HHHHhhCCcccEEecCCCcCCchhhh
Q 003270 386 TSLALQCQCLQEVDLTDCESLTNSVC 411 (835)
Q Consensus 386 ~~l~~~~~~L~~L~l~~c~~l~~~~~ 411 (835)
......+++|++|++++ +.+.+..+
T Consensus 277 ~~~~~~l~~L~~LdL~~-N~l~~~~~ 301 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNG-KEIHPSHS 301 (362)
T ss_dssp HTTSTTCCEEEEECTTS-CBCCGGGC
T ss_pred HHHhccCCceEEEecCC-CcCCCcch
Confidence 44334566777888877 46766533
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=188.70 Aligned_cols=236 Identities=19% Similarity=0.191 Sum_probs=158.2
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
.|..++|.+...+. ++. ...++++.|++++ +.+....+..|..+++|++|++++|.+.+..+.+|.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~~--iP~--~~~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLRE--VPD--GISTNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSS--CCS--CCCTTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCc--CCC--CCCCCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 35667776643221 010 1235788899988 567776667888899999999999988888788888899999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEecccc-hH----HHhhcCCCCcEEeecCCCCC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKL 224 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~~~~-i~----~~~~~~~~L~~L~l~~~~~l 224 (835)
+++|.++...+..+..+++|++|++++|.+..+. .++++|++|++++++ +. ..+..+++|++|++++| .+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cC
Confidence 9999887666667888888888888888876553 357777788777643 22 35666777777777776 34
Q ss_pred CHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhh
Q 003270 225 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSAS 301 (835)
Q Consensus 225 ~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (835)
+ .++ .+..+++|++|++++|. +++..+..+. .+++|+.|++++|. ..+..+..+++|++|++++| .+....
T Consensus 198 ~--~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 271 (440)
T 3zyj_A 198 R--EIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLP 271 (440)
T ss_dssp S--SCC-CCTTCSSCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCC
T ss_pred c--ccc-ccCCCcccCEEECCCCc-cCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccC
Confidence 4 222 25666777777777776 5544444444 66667777776665 12334556666666666665 555555
Q ss_pred HHHhhhccCccEEEccCCCc
Q 003270 302 MAAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 302 ~~~l~~~~~L~~L~l~~~~~ 321 (835)
+..+..+++|+.|++++|++
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCE
T ss_pred hhHhccccCCCEEEcCCCCc
Confidence 45555666666666666653
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=3.5e-18 Score=189.21 Aligned_cols=191 Identities=20% Similarity=0.209 Sum_probs=140.5
Q ss_pred CCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEeccc
Q 003270 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS 201 (835)
Q Consensus 122 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~ 201 (835)
+++|++|++++|.+++..|..|+.+++|++|++++|.+++..+ +..+++|++|++++|.+..+. ..++|++|++++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~~~~L~~L~L~~N 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-VGPSIETLHAANN 109 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-ECTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-CCCCcCEEECcCC
Confidence 4489999999999998888899999999999999999876555 788899999999999888776 4488999999988
Q ss_pred chHH-HhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCc
Q 003270 202 NMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISL 278 (835)
Q Consensus 202 ~i~~-~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~ 278 (835)
.+.. ....+++|+.|++++| .++. ..+..++++++|++|++++|. +++..+..+...+++|+.|++++|. .+ .
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANN-KITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSS-CCCS-GGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred cCCCCCccccCCCCEEECCCC-CCCC-CCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 8762 2345788899999888 4552 234466778888899998888 7766666665567888888888875 12 2
Q ss_pred cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCc
Q 003270 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 279 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 321 (835)
....+++|++|++++| .+.+..+ .+..+++|+.|++++|.+
T Consensus 186 ~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp CCCCCTTCCEEECCSS-CCCEECG-GGGGGTTCSEEECTTSCC
T ss_pred ccccCCCCCEEECCCC-CCCCCCH-hHcCCCCccEEEecCCcC
Confidence 2334666666666665 4544322 355566666666666654
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=2.7e-18 Score=189.28 Aligned_cols=235 Identities=20% Similarity=0.175 Sum_probs=151.8
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
.|..++|.+...+. ++. ...++++.|++++ +.+....+..|..+++|++|++++|.+.+..+.+|.++++|++|+
T Consensus 55 ~~~~v~c~~~~l~~--iP~--~~~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE--VPQ--GIPSNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSS--CCS--CCCTTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCc--cCC--CCCCCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 35677776643221 010 1225788888888 567776677788888888888888888887778888888888888
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEeccc-chH----HHhhcCCCCcEEeecCCCCC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS-NMA----QAVLNCPLLHLLDIASCHKL 224 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~~~-~i~----~~~~~~~~L~~L~l~~~~~l 224 (835)
+++|.++...+..+.++++|++|++++|.+..+. .++++|++|+++++ .+. ..+..+++|++|++++| .+
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l 208 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NI 208 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cc
Confidence 8888887666666778888888888888876543 35677777777763 222 34566677777777776 34
Q ss_pred CHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhh
Q 003270 225 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSAS 301 (835)
Q Consensus 225 ~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (835)
++ ++ .+..+++|++|++++|. +++..+..+. .+++|+.|++++|. ..+..+..+++|++|++++| .+....
T Consensus 209 ~~--~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 209 KD--MP-NLTPLVGLEELEMSGNH-FPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp SS--CC-CCTTCTTCCEEECTTSC-CSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cc--cc-cccccccccEEECcCCc-CcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence 42 22 34556667777777666 5544444443 56666666666664 12333455566666666665 455444
Q ss_pred HHHhhhccCccEEEccCCC
Q 003270 302 MAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 302 ~~~l~~~~~L~~L~l~~~~ 320 (835)
+..+..+++|++|++++|+
T Consensus 283 ~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSSTTCTTCCEEECCSSC
T ss_pred hHHhccccCCCEEEccCCC
Confidence 4445555666666666554
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=5.7e-18 Score=187.53 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=182.3
Q ss_pred ccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCcccc
Q 003270 359 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 438 (835)
Q Consensus 359 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 438 (835)
..+++|+.|++++|.+++..+..+. .+++|++|++++ +.+++..+ + ..+++|++|++++|. ++.++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~-N~l~~~~~--l---~~l~~L~~L~Ls~N~-l~~l~ 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLA-------PFTKLELLNLSS-NVLYETLD--L---ESLSTLRTLDLNNNY-VQELL 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGT-------TCTTCCEEECTT-SCCEEEEE--C---TTCTTCCEEECCSSE-EEEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHh-------CCCCCCEEEeeC-CCCCCCcc--c---ccCCCCCEEEecCCc-CCCCC
Confidence 3456888888888888875443332 457889999988 57876544 3 778889999988875 44332
Q ss_pred ccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccc
Q 003270 439 FCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVL 518 (835)
Q Consensus 439 ~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l 518 (835)
..++|+.|++++|.- .. +| ...+++|+.|++++|.++ +..
T Consensus 97 ----------------------~~~~L~~L~L~~N~l-~~---~~-------~~~l~~L~~L~L~~N~l~-------~~~ 136 (487)
T 3oja_A 97 ----------------------VGPSIETLHAANNNI-SR---VS-------CSRGQGKKNIYLANNKIT-------MLR 136 (487)
T ss_dssp ----------------------ECTTCCEEECCSSCC-CC---EE-------ECCCSSCEEEECCSSCCC-------SGG
T ss_pred ----------------------CCCCcCEEECcCCcC-CC---CC-------ccccCCCCEEECCCCCCC-------CCC
Confidence 126677777776532 11 11 234578899999999885 666
Q ss_pred ccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhc
Q 003270 519 SDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFES 598 (835)
Q Consensus 519 ~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~ 598 (835)
|..+..+++|++|++++| .++..........+++|+.|++++|...+. .....+++|+.|++++|.++++|+.+..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 212 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQS 212 (487)
T ss_dssp GBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred chhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc---cccccCCCCCEEECCCCCCCCCCHhHcC
Confidence 778889999999999998 565433333334799999999999986544 2445689999999999999999888999
Q ss_pred cccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEcc
Q 003270 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLN 661 (835)
Q Consensus 599 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~ 661 (835)
+++|+.|++++|. +++. +.. +..+++|+.|++++|.+....++..+..++.|+.+++.
T Consensus 213 l~~L~~L~Ls~N~-l~~l-p~~---l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNNK-LVLI-EKA---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTSC-CCEE-CTT---CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCCc-Cccc-chh---hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999998 8764 332 47789999999999999855788889999999988886
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.9e-18 Score=175.66 Aligned_cols=204 Identities=16% Similarity=0.131 Sum_probs=113.9
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCC-CCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L 176 (835)
+++++|++++ +.+....+..|..+++|++|++++|.+++..+.++..+++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4566666666 34554444455666666666666666665555566666666666666665 433334455555555555
Q ss_pred eccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
++++|.+..+. ...+..+++|++|++++| .++. ..+..++++++|++|++++|. ++.....
T Consensus 111 ~l~~n~l~~~~----------------~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 171 (285)
T 1ozn_A 111 HLDRCGLQELG----------------PGLFRGLAALQYLYLQDN-ALQA-LPDDTFRDLGNLTHLFLHGNR-ISSVPER 171 (285)
T ss_dssp ECTTSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred ECCCCcCCEEC----------------HhHhhCCcCCCEEECCCC-cccc-cCHhHhccCCCccEEECCCCc-ccccCHH
Confidence 55555544321 023445555555555555 2331 112234556666666666665 4432222
Q ss_pred HHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 257 EIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 257 ~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
.+. .+++|+.|++++|. ..+..+..+++|++|++++| .+.+..+..+..+++|++|++++|++..
T Consensus 172 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 172 AFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred Hhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 232 55666666666654 22445556677777777775 6666666667777777777777776543
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.4e-16 Score=179.86 Aligned_cols=127 Identities=21% Similarity=0.065 Sum_probs=68.3
Q ss_pred CCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 494 ~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
+++|+.|++++|.+ ..+|.. .++|+.|++++| .++. ++. .+++|+.|++++|..... +
T Consensus 180 ~~~L~~L~Ls~N~l--------~~l~~~---~~~L~~L~L~~N-~l~~--l~~---~~~~L~~L~Ls~N~L~~l--p--- 237 (622)
T 3g06_A 180 PSGLQELSVSDNQL--------ASLPTL---PSELYKLWAYNN-RLTS--LPA---LPSGLKELIVSGNRLTSL--P--- 237 (622)
T ss_dssp CTTCCEEECCSSCC--------SCCCCC---CTTCCEEECCSS-CCSS--CCC---CCTTCCEEECCSSCCSCC--C---
T ss_pred CCCCcEEECCCCCC--------CCCCCc---cchhhEEECcCC-cccc--cCC---CCCCCCEEEccCCccCcC--C---
Confidence 35555666666655 223322 355666666665 3332 221 235666666666654331 1
Q ss_pred hhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhh
Q 003270 574 RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY 651 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 651 (835)
..+++|+.|++++|.++.+|. .+++|+.|++++|. ++.. +.. +..+++|+.|++++|.+++ .++..+..
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~l-p~~---l~~l~~L~~L~L~~N~l~~-~~~~~l~~ 306 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRL-PES---LIHLSSETTVNLEGNPLSE-RTLQALRE 306 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSC-CGG---GGGSCTTCEEECCSCCCCH-HHHHHHHH
T ss_pred CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcC-CHH---HhhccccCEEEecCCCCCC-cCHHHHHh
Confidence 344666666666666666555 45566666666665 5533 222 2456666666666666665 34444443
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=6.6e-18 Score=176.10 Aligned_cols=197 Identities=21% Similarity=0.212 Sum_probs=160.5
Q ss_pred HhhCCcCcEEEcCCcccChhhHHhh--cCCCCCCEEEecCCCCCcccccccccC-----CcccEEeccCccccccc----
Q 003270 119 VSLLRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQEIPINH-----DQLRRLEITKCRVMRVS---- 187 (835)
Q Consensus 119 l~~~~~L~~L~l~~~~i~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~---- 187 (835)
+..+++|++|++++|.+++.+|..+ +.+++|++|++++|.+++. |..+..+ ++|++|++++|.+..+.
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 3478999999999999998888876 8999999999999999876 7777776 89999999999987654
Q ss_pred cCCCCCcEEEecccchH------HHh--hcCCCCcEEeecCCCCCCH-HHHH-HHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 188 IRCPQLEHLSLKRSNMA------QAV--LNCPLLHLLDIASCHKLSD-AAIR-LAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 188 ~~l~~L~~L~l~~~~i~------~~~--~~~~~L~~L~l~~~~~l~~-~~l~-~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
.++++|++|++++|.+. ..+ ..+++|++|++++| .++. ..++ ..+.++++|++|++++|. +++..+..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP 247 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh
Confidence 46899999999999853 233 78999999999999 4652 1233 455788999999999998 77644322
Q ss_pred HHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 258 IALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 258 ~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
....+++|+.|++++|. .+|..+. ++|++|++++| .+.+. +. +..+++|++|++++|++.+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 22257899999999997 6676666 89999999997 77766 33 8889999999999998654
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=3.5e-17 Score=167.63 Aligned_cols=205 Identities=15% Similarity=0.090 Sum_probs=128.7
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEec
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 178 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 178 (835)
++++|++++ +.+....+..+..+++|++|++++|.+.+..+.++..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 29 ~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 466666666 3455444445566666666666666666555555666666666666666665544455555555555555
Q ss_pred cCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 179 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
++|.+..+.. ..++.+++|++|++++| .++...+|..+.++++|++|++++|. +++..+..+
T Consensus 108 ~~n~l~~~~~----------------~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 169 (276)
T 2z62_A 108 VETNLASLEN----------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (276)
T ss_dssp TTSCCCCSTT----------------CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGG
T ss_pred CCCCccccCc----------------hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHh
Confidence 5554433210 13566777888888777 35433345667888888888888887 664332222
Q ss_pred H--HhCCCCc-EEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 259 A--LSCANLR-ILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 259 ~--~~~~~L~-~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
. ..++.+. .|++++|. .++.......+|++|++++| .+....+..+..+++|++|++++|++..
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccc
Confidence 2 1344443 78888886 44555555668899999887 6776655667788899999999887654
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1.7e-16 Score=169.33 Aligned_cols=262 Identities=17% Similarity=0.089 Sum_probs=144.3
Q ss_pred EEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccc----cccccCC-cccEEeccCccccccccCCCCCcEEEeccc
Q 003270 127 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQ----EIPINHD-QLRRLEITKCRVMRVSIRCPQLEHLSLKRS 201 (835)
Q Consensus 127 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~ 201 (835)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+......
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------------ 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD------------ 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH------------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH------------
Confidence 46788899999999888888889999999999876555 5566666 777777777766543100
Q ss_pred chHHHhhcC-CCCcEEeecCCCCCCHH---HHHHHHhcC-CCCCEEeCCCCCCCChHHHHHHHHh----CCCCcEEecCC
Q 003270 202 NMAQAVLNC-PLLHLLDIASCHKLSDA---AIRLAATSC-PQLESLDMSNCSCVSDESLREIALS----CANLRILNSSY 272 (835)
Q Consensus 202 ~i~~~~~~~-~~L~~L~l~~~~~l~~~---~l~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~~~----~~~L~~L~l~~ 272 (835)
.+...+... ++|++|++++| .+++. .+...+..+ ++|++|++++|. +++..+..+... .++|++|++++
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 001111221 44555555544 23211 122223333 455555555555 444333333211 23455555555
Q ss_pred CCC-------CCccccCCC-CCcEEecCCCCCCChhhHHHhhh----c-cCccEEEccCCCccccccccCcccceeeccc
Q 003270 273 CPN-------ISLESVRLP-MLTVLQLHSCEGITSASMAAISH----S-YMLEVLELDNCNLLTSVSLELPRLQNIRLVH 339 (835)
Q Consensus 273 ~~~-------l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~ 339 (835)
|.- ++..+...+ +|++|++++| .+.+..+..++. + ++|++|++++|.+.+.....++.
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-------- 218 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-------- 218 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH--------
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH--------
Confidence 430 011112222 5555555555 565555544443 3 58888888888644321110000
Q ss_pred cccccchhhcccccceeeecc-CCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcC---Cchhhhhhcc
Q 003270 340 CRKFADLNLRAMMLSSIMVSN-CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCES---LTNSVCEVFS 415 (835)
Q Consensus 340 ~~~l~~l~l~~~~l~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~---l~~~~~~~~~ 415 (835)
.+.. +++|++|++++|.+++... ..+..+...+++|++|++++| . ++......+.
T Consensus 219 -----------------~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 219 -----------------IFSSIPNHVVSLNLCLNCLHGPSL---ENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALG 277 (362)
T ss_dssp -----------------HHHHSCTTCCEEECCSSCCCCCCH---HHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHH
T ss_pred -----------------HHhcCCCCceEEECcCCCCCcHHH---HHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHH
Confidence 1223 4578888888888877432 233334446678899999884 5 4433222222
Q ss_pred -CCCCCCCccEEEecCCC
Q 003270 416 -DGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 416 -~~~~~~~L~~L~l~~~~ 432 (835)
.+..+++|+.|+++++.
T Consensus 278 ~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTSTTCCEEEEECTTSCB
T ss_pred HHhccCCceEEEecCCCc
Confidence 23567778888888776
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=7.5e-17 Score=165.62 Aligned_cols=153 Identities=24% Similarity=0.131 Sum_probs=75.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++++.++++++.+ ..+|..+ .++++.|++++| .++. ..+..+..+++|++|++++|......
T Consensus 6 ~~~l~~l~~l~~~~~~l--------~~ip~~~--~~~l~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL--------TALPPDL--PKDTTILHLSEN-LLYT-FSLATLMPYTRLTQLNLDRAELTKLQ-- 71 (290)
T ss_dssp EECSTTCCEEECTTSCC--------SSCCSCC--CTTCCEEECTTS-CCSE-EEGGGGTTCTTCCEEECTTSCCCEEE--
T ss_pred ccccCCccEEECCCCCC--------CcCCCCC--CCCCCEEEcCCC-cCCc-cCHHHhhcCCCCCEEECCCCccCccc--
Confidence 34455555566555555 4444433 245666666665 3332 12334555555666666655533221
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
....+++|++|++++|.+..+|..+..+++|++|++++|+ +++..+..+ ..+++|+.|++++|+++. ..+..|.
T Consensus 72 -~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~ 145 (290)
T 1p9a_G 72 -VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGAL---RGLGELQELYLKGNELKT-LPPGLLT 145 (290)
T ss_dssp -CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTT---TTCTTCCEEECTTSCCCC-CCTTTTT
T ss_pred -CCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHH---cCCCCCCEEECCCCCCCc-cChhhcc
Confidence 1245555566666655555555555555555555555555 444332222 444555555555555543 2223344
Q ss_pred hCCCccEEEccCC
Q 003270 651 YCTHLTHVSLNGC 663 (835)
Q Consensus 651 ~~~~L~~L~l~~~ 663 (835)
.+++|++|++++|
T Consensus 146 ~l~~L~~L~L~~N 158 (290)
T 1p9a_G 146 PTPKLEKLSLANN 158 (290)
T ss_dssp TCTTCCEEECTTS
T ss_pred cccCCCEEECCCC
Confidence 4445555555444
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=8.5e-16 Score=157.27 Aligned_cols=110 Identities=17% Similarity=0.064 Sum_probs=45.9
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcccccc----EEecccccccchhhHHHHHh
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLK----VLKLQACKYLTNTSLESLYK 623 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~----~L~l~~~~~l~~~~~~~l~~ 623 (835)
..+++|++|++++|.......+..+..+++|++|++++|.+++++. .+..+++|+ +|++++|+ +++.....
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~--- 196 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA--- 196 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTS---
T ss_pred ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccc---
Confidence 3444444444444443221113344444444444444444444322 333333333 44555544 44332221
Q ss_pred cCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 624 KGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 624 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
....+|+.|++++|++++ ..+..+..+++|++|++++|+
T Consensus 197 -~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 -FKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -SCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSC
T ss_pred -cCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCc
Confidence 112245555555555443 222334445555555555444
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=160.91 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=102.1
Q ss_pred CeeEEEccCCcchhhH-HHH--HHhhCCcCcEEEcCCcccChhhHHhh--cCCCCCCEEEecCCCCCcccc----ccccc
Q 003270 99 NATEVNIYGAPAIHLL-VMK--AVSLLRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQ----EIPIN 169 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~-~~~--~l~~~~~L~~L~l~~~~i~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~~ 169 (835)
.++.+.+.++ .+.+. +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4566666663 22221 111 12234557777777777766666665 666777777777776665333 12224
Q ss_pred CCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHH--HhcCCCCCEEeCCCC
Q 003270 170 HDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA--ATSCPQLESLDMSNC 247 (835)
Q Consensus 170 l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~--~~~~~~L~~L~L~~~ 247 (835)
+++|++|++++|.+..+.. ..++.+++|++|++++|....+.+++.. +.++++|++|++++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC----------------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT----------------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred ccCCCEEEeeCCCcchhhH----------------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 5555555555555433221 2334555555555555532221222211 245556666666666
Q ss_pred CCCCh--HHHHHHHHhCCCCcEEecCCCC--C-CCccccCC---CCCcEEecCCCCCCChhhHHHhhhccCccEEEccCC
Q 003270 248 SCVSD--ESLREIALSCANLRILNSSYCP--N-ISLESVRL---PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319 (835)
Q Consensus 248 ~~l~~--~~~~~~~~~~~~L~~L~l~~~~--~-l~~~~~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 319 (835)
. ++. ..+..+...+++|++|++++|. . .|..++.+ ++|++|++++| .+.. .+..+. ++|++|++++|
T Consensus 208 ~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 208 G-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-VPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp C-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-CCSCCC--SCCSCEECCSC
T ss_pred C-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCc-hhhhhc--CCCCEEECCCC
Confidence 5 441 2222222355666666666655 2 23444443 46666666665 4442 222222 56666666666
Q ss_pred Cccc
Q 003270 320 NLLT 323 (835)
Q Consensus 320 ~~~~ 323 (835)
.+.+
T Consensus 283 ~l~~ 286 (310)
T 4glp_A 283 RLNR 286 (310)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 6544
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=4.3e-16 Score=155.64 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=102.4
Q ss_pred cCcCCCCccccccc-ceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCcc---EEeccCCCCcC
Q 003270 491 LGICPKLSTLGIEA-LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIE---SLILMSCQSIG 566 (835)
Q Consensus 491 l~~~~~L~~l~l~~-~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~---~L~l~~~~~~~ 566 (835)
+.++++|+.+++++ |.++ ...+..|.++++|++|++++| .++. ++. +..+++|+ +|++++|+.+.
T Consensus 76 f~~l~~L~~L~l~~~n~l~-------~i~~~~f~~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLT-------YIDPDALKELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EESCTTCCEEEEEEETTCC-------EECTTSEECCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred cCCCcCCcEEECCCCCCee-------EcCHHHhCCCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchh
Confidence 44555666666665 5553 112234666777777777776 3443 444 56666666 77777774444
Q ss_pred chhhHhhhhccccc-eeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCC-CCccEEeCCCcccchHH
Q 003270 567 PDGLYSLRSLQNLT-MLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSL-PALQELDLSYGTLCQSA 644 (835)
Q Consensus 567 ~~~~~~~~~l~~L~-~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~n~~~~~~ 644 (835)
...+..+..+++|+ +|++++|+++.+|......++|++|++++|+.++......+ ..+ ++|+.|++++|+++.
T Consensus 145 ~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~---~~l~~~L~~L~l~~N~l~~-- 219 (239)
T 2xwt_C 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF---GGVYSGPSLLDVSQTSVTA-- 219 (239)
T ss_dssp EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTT---TTCSBCCSEEECTTCCCCC--
T ss_pred hcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHh---hccccCCcEEECCCCcccc--
Confidence 44345677888888 88888888887776433337888888888854775544443 667 888888888888875
Q ss_pred HHHHHhhCCCccEEEccCCC
Q 003270 645 IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l~~~~ 664 (835)
++.. .+++|++|++.++.
T Consensus 220 l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 220 LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCT--TCTTCSEEECTTC-
T ss_pred CChh--HhccCceeeccCcc
Confidence 3322 57788888888764
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=155.89 Aligned_cols=227 Identities=19% Similarity=0.173 Sum_probs=163.4
Q ss_pred CCcCcEEEcCCcccChhhHHh---hcCCCCCCEEEecCCCCCccccccc--ccCCcccEEeccCccccccccCCCCCcEE
Q 003270 122 LRNLEALTLGRGQLGDAFFHA---LADCSMLKSLNVNDATLGNGVQEIP--INHDQLRRLEITKCRVMRVSIRCPQLEHL 196 (835)
Q Consensus 122 ~~~L~~L~l~~~~i~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~l~~L~~L 196 (835)
...++.+.+.++.+++..... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+....
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--------- 133 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR--------- 133 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT---------
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh---------
Confidence 345788999888887543222 2245779999999999988887766 77788888888777765311
Q ss_pred EecccchH-HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChH-HHH--HHHHhCCCCcEEecCC
Q 003270 197 SLKRSNMA-QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE-SLR--EIALSCANLRILNSSY 272 (835)
Q Consensus 197 ~l~~~~i~-~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~-~~~--~~~~~~~~L~~L~l~~ 272 (835)
..+. ..+..+++|++|++++|. +.. ..+..++++++|++|++++|. +.+. ... .....+++|++|++++
T Consensus 134 ----~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 134 ----SWLAELQQWLKPGLKVLSIAQAH-SPA-FSCEQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp ----SSHHHHHTTBCSCCCEEEEECCS-SCC-CCTTSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred ----hhhHHHHhhhccCCCEEEeeCCC-cch-hhHHHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCC
Confidence 0111 234578889999999884 542 224567889999999999998 5543 221 1113788999999999
Q ss_pred CC--CCCcc----ccCCCCCcEEecCCCCCCChhhHHHhhhc---cCccEEEccCCCccccccccCcccceeeccccccc
Q 003270 273 CP--NISLE----SVRLPMLTVLQLHSCEGITSASMAAISHS---YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKF 343 (835)
Q Consensus 273 ~~--~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l 343 (835)
|. .++.. +..+++|++|++++| .+.+..+..+..+ ++|++|++++|.+. .+|..++ ++|
T Consensus 207 N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~----------~~L 274 (310)
T 4glp_A 207 TGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP----------AKL 274 (310)
T ss_dssp SCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC----------SCC
T ss_pred CCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc----------CCC
Confidence 97 22332 357899999999998 7777666666666 69999999999876 5565432 355
Q ss_pred cchhhccccccee-eeccCCCcceeeeccCcccc
Q 003270 344 ADLNLRAMMLSSI-MVSNCAALHRINITSNSLQK 376 (835)
Q Consensus 344 ~~l~l~~~~l~~~-~l~~~~~L~~L~l~~n~l~~ 376 (835)
+.+++++|.++++ .+..+++|+.|++++|.+++
T Consensus 275 ~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 6667777777764 56788999999999999875
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=2.8e-15 Score=155.61 Aligned_cols=187 Identities=22% Similarity=0.322 Sum_probs=105.8
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|+++++ .+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~-~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCC-CccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 46667777663 34432 246666667777776666665433 6666666666666666543 22 344455555555
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+ ..+..+++|++|++++| .+++ ++. +..+++|++|++++|. +++..+
T Consensus 114 l~~n~l~~~------------------~~l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~-- 168 (308)
T 1h6u_A 114 LTSTQITDV------------------TPLAGLSNLQVLYLDLN-QITN--ISP-LAGLTNLQYLSIGNAQ-VSDLTP-- 168 (308)
T ss_dssp CTTSCCCCC------------------GGGTTCTTCCEEECCSS-CCCC--CGG-GGGCTTCCEEECCSSC-CCCCGG--
T ss_pred CCCCCCCCc------------------hhhcCCCCCCEEECCCC-ccCc--Ccc-ccCCCCccEEEccCCc-CCCChh--
Confidence 555544332 23555666666666665 3432 121 5566666666666665 443222
Q ss_pred HHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCc
Q 003270 258 IALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 258 ~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 321 (835)
+. .+++|+.|++++|. .++. +..+++|++|++++| .+.+.. .+..+++|++|++++|.+
T Consensus 169 l~-~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 LA-NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GT-TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred hc-CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCee
Confidence 22 56666666666664 2222 455666666666665 455443 366677777777777764
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=1.2e-14 Score=150.89 Aligned_cols=125 Identities=24% Similarity=0.284 Sum_probs=62.4
Q ss_pred ccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccc
Q 003270 523 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQL 602 (835)
Q Consensus 523 ~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L 602 (835)
..+++|++|++++| .+++ ++. +..+++|++|++++|..... ..+..+++|+.|++++|.+++++. +..+++|
T Consensus 104 ~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 175 (308)
T 1h6u_A 104 AGLQSIKTLDLTST-QITD--VTP-LAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKL 175 (308)
T ss_dssp TTCTTCCEEECTTS-CCCC--CGG-GTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred cCCCCCCEEECCCC-CCCC--chh-hcCCCCCCEEECCCCccCcC---ccccCCCCccEEEccCCcCCCChh-hcCCCCC
Confidence 33444455555544 2322 221 44455555555555543322 125555555555555555555544 5555556
Q ss_pred cEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 603 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 603 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+.|++++|. +++..+ +..+++|+.|++++|++++. . .+..+++|++|++++|+
T Consensus 176 ~~L~l~~n~-l~~~~~-----l~~l~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDNK-ISDISP-----LASLPNLIEVHLKNNQISDV-S--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSC-CCCCGG-----GGGCTTCCEEECTTSCCCBC-G--GGTTCTTCCEEEEEEEE
T ss_pred CEEECCCCc-cCcChh-----hcCCCCCCEEEccCCccCcc-c--cccCCCCCCEEEccCCe
Confidence 666665555 444332 24455566666666655542 1 24555666666666554
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=4.1e-15 Score=151.44 Aligned_cols=158 Identities=22% Similarity=0.176 Sum_probs=94.3
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccc-cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG 569 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 569 (835)
+.++++|+.|++++|.+ ..++ ..+..+++|++|++++| .+.. ..+..+..+++|++|++++|..... .
T Consensus 57 ~~~l~~L~~L~l~~n~l--------~~i~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~ 125 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKL--------QTLPAGIFKELKNLETLWVTDN-KLQA-LPIGVFDQLVNLAELRLDRNQLKSL-P 125 (270)
T ss_dssp SSSCTTCCEEECCSSCC--------SCCCTTTTSSCTTCCEEECCSS-CCCC-CCTTTTTTCSSCCEEECCSSCCCCC-C
T ss_pred hcCCCCCCEEECCCCcc--------CeeChhhhcCCCCCCEEECCCC-cCCc-CCHhHcccccCCCEEECCCCccCee-C
Confidence 34445555555555544 2222 23455666666666665 3332 1223345666666666666664432 2
Q ss_pred hHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 570 LYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 570 ~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
+..+..+++|++|++++|.+.+++. .+..+++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~ 200 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF---DKLTELKTLKLDNNQLKR-VPEGA 200 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTT
T ss_pred HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHh---ccCCCcCEEECCCCcCCc-CCHHH
Confidence 4456677777777777777776655 46677777777777776 665544332 566777777777777765 33344
Q ss_pred HhhCCCccEEEccCCC
Q 003270 649 LAYCTHLTHVSLNGCG 664 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~ 664 (835)
+..+++|++|++++|+
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccccCCCEEEecCCC
Confidence 6667777777777776
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=1e-14 Score=148.45 Aligned_cols=137 Identities=20% Similarity=0.115 Sum_probs=95.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.++ +..+..+..+++|++|++++| .++. ..+..+..+++|++|++++|..... ..
T Consensus 81 ~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~ 150 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQ-------ALPIGVFDQLVNLAELRLDRN-QLKS-LPPRVFDSLTKLTYLSLGYNELQSL-PK 150 (270)
T ss_dssp TSSCTTCCEEECCSSCCC-------CCCTTTTTTCSSCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred hcCCCCCCEEECCCCcCC-------cCCHhHcccccCCCEEECCCC-ccCe-eCHHHhCcCcCCCEEECCCCcCCcc-CH
Confidence 455666667777766663 222344667778888888877 3432 2234466778888888888875433 24
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
..+..+++|++|++++|.+++++. .|..+++|++|++++|+ +++..... +..+++|+.|++++|.+.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGA---FDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSCBC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHH---hccccCCCEEEecCCCee
Confidence 457788888888888888888765 57788888888888887 77654443 366788888888888764
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=1.2e-14 Score=149.24 Aligned_cols=61 Identities=21% Similarity=0.167 Sum_probs=38.6
Q ss_pred eccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 358 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+.++++++.++++++.++..... ..+.++.|++++ +.+++..+..+ ..+++|++|+++++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----------~~~~l~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----------LPKDTTILHLSE-NLLYTFSLATL---MPYTRLTQLNLDRAE 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----------CCTTCCEEECTT-SCCSEEEGGGG---TTCTTCCEEECTTSC
T ss_pred ccccCCccEEECCCCCCCcCCCC----------CCCCCCEEEcCC-CcCCccCHHHh---hcCCCCCEEECCCCc
Confidence 55666777777777766654211 124677777777 46766655555 566777777777664
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.1e-15 Score=155.84 Aligned_cols=203 Identities=16% Similarity=0.096 Sum_probs=112.5
Q ss_pred CCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 97 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 97 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
++++++|+++++ .+... +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 40 l~~L~~L~l~~~-~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTS-CCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCC-Ccccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 356777777773 44432 3467777777777777777653 366777777777777777766555556666666666
Q ss_pred eccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
++++|.+..+.. ..+..+++|++|++++| .++. ..+..+.++++|++|++++|. +++..+.
T Consensus 115 ~L~~n~l~~~~~----------------~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 175 (272)
T 3rfs_A 115 VLVENQLQSLPD----------------GVFDKLTNLTYLNLAHN-QLQS-LPKGVFDKLTNLTELDLSYNQ-LQSLPEG 175 (272)
T ss_dssp ECTTSCCCCCCT----------------TTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ECCCCcCCccCH----------------HHhccCCCCCEEECCCC-ccCc-cCHHHhccCccCCEEECCCCC-cCccCHH
Confidence 666666543321 12344555555555555 2331 112223455566666666655 4432222
Q ss_pred HHHHhCCCCcEEecCCCC--CCCc-cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCccc
Q 003270 257 EIALSCANLRILNSSYCP--NISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRL 332 (835)
Q Consensus 257 ~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L 332 (835)
.+. .+++|+.|++++|. .++. .+..+++|++|++++| .+. +.+++|+.+++..|.+.|.+|..+..+
T Consensus 176 ~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 176 VFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred Hhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 222 45555555555554 2222 2345566666666554 222 224456666666666666666555443
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=8.9e-16 Score=153.29 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=91.9
Q ss_pred cCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCC-CCcccccccccCCcccEEeccC-ccccccc----cCCCCCcEEE
Q 003270 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITK-CRVMRVS----IRCPQLEHLS 197 (835)
Q Consensus 124 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~----~~l~~L~~L~ 197 (835)
+|++|++++|.+++..+.+|+.+++|++|++++|. ++...+..+.++++|++|++++ |.+..+. .++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 4332223444445555555544 4443322 1233333333
Q ss_pred ecccchH--HHhhcCCCCc---EEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCc-EEecC
Q 003270 198 LKRSNMA--QAVLNCPLLH---LLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR-ILNSS 271 (835)
Q Consensus 198 l~~~~i~--~~~~~~~~L~---~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~-~L~l~ 271 (835)
+++|.+. ..+..+++|+ +|++++|.. ++......+. .+++|+ .|+++
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~--------------------------l~~i~~~~~~-~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPY--------------------------MTSIPVNAFQ-GLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTT--------------------------CCEECTTTTT-TTBSSEEEEECC
T ss_pred CCCCCCccccccccccccccccEEECCCCcc--------------------------hhhcCccccc-chhcceeEEEcC
Confidence 3333322 0123333444 555555422 3222111122 444455 55554
Q ss_pred CCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhc-cCccEEEccCCCccccccccCcccceeecccc
Q 003270 272 YCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHS-YMLEVLELDNCNLLTSVSLELPRLQNIRLVHC 340 (835)
Q Consensus 272 ~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~ 340 (835)
+|. .++......++|++|++++|..+....+..+..+ ++|++|++++|.+.+..+..+++++.|.+.++
T Consensus 165 ~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 443 2333333335666666666533555555566777 78888888887765433334666666665544
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=2.2e-15 Score=153.52 Aligned_cols=176 Identities=13% Similarity=0.116 Sum_probs=90.5
Q ss_pred HhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEe
Q 003270 119 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 198 (835)
Q Consensus 119 l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l 198 (835)
+..+++|+.|++++|.+... ..++.+++|++|++++|.+++ ++ .+..+++|++|++++|.+..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~----------- 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLP----------- 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCC-----------
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccC-----------
Confidence 34566777777777766642 346667777777777776654 22 3444455555555544443221
Q ss_pred cccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CC
Q 003270 199 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NI 276 (835)
Q Consensus 199 ~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l 276 (835)
...+..+++|++|++++| .++. ..+..+.++++|++|++++|. +++..+..+. .+++|+.|++++|. .+
T Consensus 102 -----~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 102 -----NGVFDKLTNLKELVLVEN-QLQS-LPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFD-KLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp -----TTTTTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred -----hhHhcCCcCCCEEECCCC-cCCc-cCHHHhccCCCCCEEECCCCc-cCccCHHHhc-cCccCCEEECCCCCcCcc
Confidence 023456666777777766 3441 112335667777777777776 5532222222 45556666665554 22
Q ss_pred Ccc-ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCC
Q 003270 277 SLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319 (835)
Q Consensus 277 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 319 (835)
+.. +..+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 221 234444444444443 333333333344444444444444
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=3.5e-14 Score=142.76 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=115.9
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
+.++.|++++|.+. +..+..+..+++|++|++++| .+.. ..+..+..+++|++|++++|..... .+..+.
T Consensus 35 ~~l~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-------TLSDATFRGLTKLTWLNLDYN-QLQT-LSAGVFDDLTELGTLGLANNQLASL-PLGVFD 104 (251)
T ss_dssp TTCCEEECTTSCCC-------CCCTTTTTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECTTSCCCCC-CTTTTT
T ss_pred CCCCEEEccCCCcC-------ccCHhHhcCcccCCEEECCCC-cCCc-cCHhHhccCCcCCEEECCCCccccc-ChhHhc
Confidence 46777777777774 444556778888888888887 4543 2344567788888888888875543 245677
Q ss_pred hccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 575 SLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
.+++|++|++++|.+++++. .+..+++|++|++++|. +++..+..+ +.+++|+.|++++|+++. ..+..+..++
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 179 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAF---DKLTNLQTLSLSTNQLQS-VPHGAFDRLG 179 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCT
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHc---CcCcCCCEEECCCCcCCc-cCHHHHhCCC
Confidence 88888888888888888766 46788888888888887 776655433 678888888888888876 3445677888
Q ss_pred CccEEEccCCCC
Q 003270 654 HLTHVSLNGCGN 665 (835)
Q Consensus 654 ~L~~L~l~~~~~ 665 (835)
+|++|++++|+-
T Consensus 180 ~L~~L~l~~N~~ 191 (251)
T 3m19_A 180 KLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSCCB
T ss_pred CCCEEEeeCCce
Confidence 888888888863
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.4e-13 Score=141.40 Aligned_cols=167 Identities=21% Similarity=0.207 Sum_probs=135.5
Q ss_pred CCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCcc
Q 003270 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD 541 (835)
Q Consensus 462 ~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~ 541 (835)
+++|+.+++++|. +... + .+..+++|+.|++++|.+ ..++. +..+++|++|++++| .+++
T Consensus 45 l~~L~~L~l~~~~-i~~~---~------~~~~l~~L~~L~L~~n~l--------~~~~~-l~~l~~L~~L~l~~n-~l~~ 104 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV---Q------GIQYLPNVTKLFLNGNKL--------TDIKP-LANLKNLGWLFLDEN-KVKD 104 (291)
T ss_dssp HHTCCEEECTTSC-CCCC---T------TGGGCTTCCEEECCSSCC--------CCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred cCcccEEEccCCC-cccC---h------hHhcCCCCCEEEccCCcc--------CCCcc-cccCCCCCEEECCCC-cCCC
Confidence 4566777777653 2222 2 167789999999999988 44444 889999999999998 5654
Q ss_pred chhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHH
Q 003270 542 DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESL 621 (835)
Q Consensus 542 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 621 (835)
++. +..+++|++|++++|..... ..+..+++|+.|++++|.++++ ..+..+++|+.|++++|. +++..+
T Consensus 105 --~~~-l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--- 173 (291)
T 1h6t_A 105 --LSS-LKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--- 173 (291)
T ss_dssp --GGG-GTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG---
T ss_pred --Chh-hccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh---
Confidence 443 88999999999999986553 5788999999999999999988 578899999999999998 887654
Q ss_pred HhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 622 YKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 622 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 174 --l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCc
Confidence 3789999999999999987 33 38889999999999986
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=1.1e-13 Score=139.08 Aligned_cols=151 Identities=21% Similarity=0.127 Sum_probs=111.7
Q ss_pred CCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 575 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 575 (835)
..+.++.+++.+ ..+|..+. ++++.|++++| .+.. ..+..+..+++|++|++++|..... .+..+..
T Consensus 15 ~~~~l~~~~~~l--------~~~p~~~~--~~l~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSL--------DSVPSGIP--ADTEKLDLQST-GLAT-LSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDD 81 (251)
T ss_dssp GGTEEECTTCCC--------SSCCSCCC--TTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTT
T ss_pred CCeEEecCCCCc--------cccCCCCC--CCCCEEEccCC-CcCc-cCHhHhcCcccCCEEECCCCcCCcc-CHhHhcc
Confidence 345556666655 55665543 68899999998 4543 2344577888999999999875543 3556888
Q ss_pred ccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC
Q 003270 576 LQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 654 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~ 654 (835)
+++|++|++++|.+++++. .+..+++|++|++++|. +++.....+ ..+++|+.|++++|++++ ..+..|..+++
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 156 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVF---DRLTKLKELRLNTNQLQS-IPAGAFDKLTN 156 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHh---ccCCcccEEECcCCcCCc-cCHHHcCcCcC
Confidence 8999999999999888765 67888899999999887 776654433 678889999999888876 34456778888
Q ss_pred ccEEEccCCC
Q 003270 655 LTHVSLNGCG 664 (835)
Q Consensus 655 L~~L~l~~~~ 664 (835)
|++|++++|.
T Consensus 157 L~~L~L~~N~ 166 (251)
T 3m19_A 157 LQTLSLSTNQ 166 (251)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888888875
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=2.8e-13 Score=139.06 Aligned_cols=169 Identities=22% Similarity=0.219 Sum_probs=81.1
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecc
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 200 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~ 200 (835)
.+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+..+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~------------- 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS------------- 106 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-------------
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-------------
Confidence 345555555555555432 234555555555555555543222 444555555555554443321
Q ss_pred cchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCc
Q 003270 201 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISL 278 (835)
Q Consensus 201 ~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~ 278 (835)
.+..+++|++|++++| .+++ + ..+..+++|++|++++|. +++. ..+. .+++|+.|++++|. .++.
T Consensus 107 -----~l~~l~~L~~L~L~~n-~i~~--~-~~l~~l~~L~~L~l~~n~-l~~~--~~l~-~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 107 -----SLKDLKKLKSLSLEHN-GISD--I-NGLVHLPQLESLYLGNNK-ITDI--TVLS-RLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp -----GGTTCTTCCEEECTTS-CCCC--C-GGGGGCTTCCEEECCSSC-CCCC--GGGG-GCTTCSEEECCSSCCCCCGG
T ss_pred -----hhccCCCCCEEECCCC-cCCC--C-hhhcCCCCCCEEEccCCc-CCcc--hhhc-cCCCCCEEEccCCccccchh
Confidence 1333334444444443 2221 1 123344444444444444 3322 1122 44444444444443 2222
Q ss_pred cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 279 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
+..+++|++|++++| .+.+. ..+..+++|+.|++++|.+..
T Consensus 174 -l~~l~~L~~L~L~~N-~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred -hcCCCccCEEECCCC-cCCCC--hhhccCCCCCEEECcCCcccC
Confidence 445556666666655 45543 347778888888888887544
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=1.6e-13 Score=132.06 Aligned_cols=152 Identities=13% Similarity=0.166 Sum_probs=117.5
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
...+++|+.+++++|.+ ..+| .+..+++|++|++++| .+.+ + ..+..+++|++|++++|..... .+
T Consensus 40 ~~~l~~L~~L~l~~n~i--------~~l~-~l~~l~~L~~L~l~~n-~~~~--~-~~l~~l~~L~~L~l~~n~l~~~-~~ 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANINV--------TDLT-GIEYAHNIKDLTINNI-HATN--Y-NPISGLSNLERLRIMGKDVTSD-KI 105 (197)
T ss_dssp HHHHHTCCEEEEESSCC--------SCCT-TGGGCTTCSEEEEESC-CCSC--C-GGGTTCTTCCEEEEECTTCBGG-GS
T ss_pred hhhcCCccEEeccCCCc--------cChH-HHhcCCCCCEEEccCC-CCCc--c-hhhhcCCCCCEEEeECCccCcc-cC
Confidence 45667788888888877 5555 5778889999999988 4543 2 3577889999999999875542 36
Q ss_pred HhhhhccccceeeecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.+++ .+..+..+++|++|++++|+.+++.. . +..+++|+.|++++|++++ ++ .+
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~---l~~l~~L~~L~l~~n~i~~--~~-~l 177 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--P---LKTLPELKSLNIQFDGVHD--YR-GI 177 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--G---GGGCSSCCEEECTTBCCCC--CT-TG
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--h---hcCCCCCCEEECCCCCCcC--hH-Hh
Confidence 678888999999999999886 56678889999999999987566542 2 3678899999999998876 22 57
Q ss_pred hhCCCccEEEccCCC
Q 003270 650 AYCTHLTHVSLNGCG 664 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~ 664 (835)
..+++|++|++++|+
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 788999999999886
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=8.2e-14 Score=147.58 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=108.1
Q ss_pred CCCcccccccceeEEEeecCCccccc-ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~-~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
++++.|++++|++ ..+|. .|.++++|++|+|++|. +.+..-+..+.++++++++...++..+....+..|
T Consensus 30 ~~l~~L~Ls~N~i--------~~i~~~~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 30 RNAIELRFVLTKL--------RVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp TTCSEEEEESCCC--------SEECTTSSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred CCCCEEEccCCcC--------CCcCHHHHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 4567777888877 44553 57888889999998884 32211123466788877765555444555446678
Q ss_pred hhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCC-CCccEEeCCCcccchHHHHHHHhh
Q 003270 574 RSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSL-PALQELDLSYGTLCQSAIEELLAY 651 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~n~~~~~~~~~~l~~ 651 (835)
..+++|++|++++|.+..++. .+....++..+++.++..++......+ ..+ ..++.|++++|+++. ++.....
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f---~~~~~~l~~L~L~~N~i~~--i~~~~f~ 175 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF---VGLSFESVILWLNKNGIQE--IHNSAFN 175 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS---TTSBSSCEEEECCSSCCCE--ECTTSST
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch---hhcchhhhhhccccccccC--CChhhcc
Confidence 888899999999998887665 555667788888877665765544432 333 468888888888875 3333334
Q ss_pred CCCccEEEccCCCCCccc
Q 003270 652 CTHLTHVSLNGCGNMHDL 669 (835)
Q Consensus 652 ~~~L~~L~l~~~~~~~~~ 669 (835)
.++|+++++.+|..+..+
T Consensus 176 ~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp TEEEEEEECTTCTTCCCC
T ss_pred ccchhHHhhccCCcccCC
Confidence 567888888876655544
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.6e-13 Score=152.87 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=113.9
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
.+++.|++++ +.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~-n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNR-LNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCS-SCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCC-CCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 4788888888 35554 33333 367888888888887 455 457788888888888866 666 433 788888
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+...+++|++|++++|.+...-..+++|++|++++| .++. +|. +. ++|++|++++|. ++. .+.
T Consensus 127 Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N-~L~~--lp~-l~--~~L~~L~Ls~N~-L~~-lp~- 197 (571)
T 3cvr_A 127 VDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTF--LPE-LP--ESLEALDVSTNL-LES-LPA- 197 (571)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSC--CCC-CC--TTCCEEECCSSC-CSS-CCC-
T ss_pred CCCCcCCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCC-CCCC--cch-hh--CCCCEEECcCCC-CCc-hhh-
Confidence 88888776655667777777777766533234567777777776 3442 343 33 667777777766 441 111
Q ss_pred HHH----hCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhh
Q 003270 258 IAL----SCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISH 307 (835)
Q Consensus 258 ~~~----~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 307 (835)
+.. ..+.|+.|++++|. .+|..++.+++|+.|++++| .+.+..+..+..
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQ 252 (571)
T ss_dssp CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS-SCCHHHHHHHHH
T ss_pred HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC-cCCCcCHHHHHH
Confidence 110 11122666666654 45555555555555555554 455555544444
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.5e-13 Score=153.00 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=149.2
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCC-CCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCP-QLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~L~~L~l~~~ 201 (835)
.+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+..+.. +. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC
Confidence 489999999999987 66655 488999999999997 566 567999999999999987765 44 9999999999
Q ss_pred chHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCcc
Q 003270 202 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLE 279 (835)
Q Consensus 202 ~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~ 279 (835)
.++.....+++|+.|++++| .++. +|. .+++|++|++++|. +++ .+. + . ++|+.|++++|. .+|.
T Consensus 131 ~l~~lp~~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-L~~-lp~-l--~-~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 131 QLTMLPELPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ-LTF-LPE-L--P-ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp CCSCCCCCCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSC-CCC-C--C-TTCCEEECCSSCCSSCCC-
T ss_pred cCCCCCCcCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC-CCC-cch-h--h-CCCCEEECcCCCCCchhh-
Confidence 88743337889999999998 4663 453 67899999999998 765 233 3 2 899999999997 5666
Q ss_pred ccCCCCC-------cEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccc
Q 003270 280 SVRLPML-------TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQ 333 (835)
Q Consensus 280 ~~~~~~L-------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~ 333 (835)
+.. +| +.|++++| .+.. .+..+..+++|+.|++++|.+.+.+|..+..+.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 443 67 99999997 6664 566677899999999999999998887665544
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=1.6e-13 Score=145.36 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=122.4
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCccccc-ccccCCcccE-EeccCccccccc----cCCCCCcEE
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE-IPINHDQLRR-LEITKCRVMRVS----IRCPQLEHL 196 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~-L~l~~~~~~~~~----~~l~~L~~L 196 (835)
+++++|++++|.|+..-+.+|+++++|++|++++|.+.+.++. .+.+++++++ +.+.+|++..+. ..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4677777777777755455677777777777777776555543 4555665554 334445554331 234555555
Q ss_pred EecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--
Q 003270 197 SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 274 (835)
Q Consensus 197 ~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-- 274 (835)
++++|.+.... +..+....++..+++.++..+.......+......++.|++++|.
T Consensus 110 ~l~~n~l~~~~----------------------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 110 LISNTGIKHLP----------------------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EEEEECCSSCC----------------------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cccccccccCC----------------------chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55554443100 011122233444444433223321111122112346667777665
Q ss_pred CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccc
Q 003270 275 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 354 (835)
Q Consensus 275 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~ 354 (835)
.++...+...+|+++.+.++..+.......+..+++|++|++++|.+..-.+..+.++++|...++.+++.+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP------- 240 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP------- 240 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCC-------
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCC-------
Confidence 5566666667788888876545666555667888999999999987654333457788888777765554432
Q ss_pred eeeeccCCCcceeeec
Q 003270 355 SIMVSNCAALHRINIT 370 (835)
Q Consensus 355 ~~~l~~~~~L~~L~l~ 370 (835)
.+.++++|+.+++.
T Consensus 241 --~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 241 --TLEKLVALMEASLT 254 (350)
T ss_dssp --CTTTCCSCCEEECS
T ss_pred --CchhCcChhhCcCC
Confidence 24455566655554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=8.1e-13 Score=148.99 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=74.2
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccc--cCCCCCcEEEe
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSL 198 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~L~~L~l 198 (835)
.+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+..+. ..+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 344455555555544432 1 34455555555555555443222 444444444444444443221 12333333333
Q ss_pred cccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCC
Q 003270 199 KRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 276 (835)
Q Consensus 199 ~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 276 (835)
++|.+. ..+..+++|+.|++++| .+.+ + ..+..+++|++|+|++|. +.+..+
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~--l-~~l~~l~~L~~L~Ls~N~-l~~~~~--------------------- 170 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNN-KITD--I-TVLSRLTKLDTLSLEDNQ-ISDIVP--------------------- 170 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSS-CCCC--C-GGGGSCTTCSEEECCSSC-CCCCGG---------------------
T ss_pred cCCCCCCCccccCCCccCEEECCCC-ccCC--c-hhhcccCCCCEEECcCCc-CCCchh---------------------
Confidence 333332 23444445555555544 2332 1 233444455555555444 332222
Q ss_pred CccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 277 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 277 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
+..+++|+.|++++| .+.+. ..+..+++|+.|++++|.+.+
T Consensus 171 ---l~~l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 ---LAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ---hccCCCCCEEECcCC-CCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 334444444444443 34332 345556666666666665544
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=132.57 Aligned_cols=150 Identities=12% Similarity=0.093 Sum_probs=101.6
Q ss_pred ccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccc
Q 003270 499 TLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQN 578 (835)
Q Consensus 499 ~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 578 (835)
.++++++.+ ..+|..+ .+.+++|++++| .++.......+..+++|++|++++|.... ..+..|..+++
T Consensus 15 ~l~~s~n~l--------~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~ 82 (220)
T 2v70_A 15 TVDCSNQKL--------NKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASG 82 (220)
T ss_dssp EEECCSSCC--------SSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred EeEeCCCCc--------ccCccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCC
Confidence 445555554 4455433 345677777777 45432222346677778888887777443 32456777888
Q ss_pred cceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccE
Q 003270 579 LTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTH 657 (835)
Q Consensus 579 L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~ 657 (835)
|++|++++|.+++++. .|..+++|++|++++|. +++..+..+ ..+++|+.|++++|++++ ..+..|..+++|++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSF---IGLSSVRLLSLYDNQITT-VAPGAFDTLHSLST 157 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSS---TTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCE
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHc---CCCccCCEEECCCCcCCE-ECHHHhcCCCCCCE
Confidence 8888888888887655 57778888888888877 776655543 667788888888888776 34666777888888
Q ss_pred EEccCCCC
Q 003270 658 VSLNGCGN 665 (835)
Q Consensus 658 L~l~~~~~ 665 (835)
|++++|+-
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 88888763
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.8e-12 Score=124.67 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=51.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.++ +..+..+..+++|++|++++| .+++ ..+..+..+++|++|++++|..++..
T Consensus 84 l~~l~~L~~L~l~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n-~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~-- 152 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVT-------SDKIPNLSGLTSLTLLDISHS-AHDD-SILTKINTLPKVNSIDLSYNGAITDI-- 152 (197)
T ss_dssp GTTCTTCCEEEEECTTCB-------GGGSCCCTTCTTCCEEECCSS-BCBG-GGHHHHTTCSSCCEEECCSCTBCCCC--
T ss_pred hhcCCCCCEEEeECCccC-------cccChhhcCCCCCCEEEecCC-ccCc-HhHHHHhhCCCCCEEEccCCCCcccc--
Confidence 344455555555555443 334444555666666666665 3332 12333445555555555555433332
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEeccccc
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACK 611 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~ 611 (835)
..+..+++|++|++++|.+++++ .+..+++|++|++++|+
T Consensus 153 ~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 153 MPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred HhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 23444555555555555554443 34444455555555444
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=1e-12 Score=148.08 Aligned_cols=149 Identities=21% Similarity=0.193 Sum_probs=122.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.+. .++. +..+++|+.|++++| .+.+ ++ .+..+++|+.|++++|.... +
T Consensus 61 l~~l~~L~~L~Ls~N~l~--------~~~~-l~~l~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~l~~---l 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLT--------DIKP-LTNLKNLGWLFLDEN-KIKD--LS-SLKDLKKLKSLSLEHNGISD---I 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCC--------CCGG-GGGCTTCCEEECCSS-CCCC--CT-TSTTCTTCCEEECTTSCCCC---C
T ss_pred HccCCCCCEEEeeCCCCC--------CChh-hccCCCCCEEECcCC-CCCC--Ch-hhccCCCCCEEEecCCCCCC---C
Confidence 677899999999999873 3444 788999999999998 5654 33 57889999999999998654 3
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|. +++..+ +..+++|+.|++++|.+++. ..+.
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~i~~l---~~l~ 194 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-----LAGLTKLQNLYLSKNHISDL---RALA 194 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-----GTTCTTCCEEECCSSCCCBC---GGGT
T ss_pred ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-----hccCCCCCEEECcCCCCCCC---hHHc
Confidence 4688899999999999999988 668889999999999998 877654 37789999999999999873 3578
Q ss_pred hCCCccEEEccCCCC
Q 003270 651 YCTHLTHVSLNGCGN 665 (835)
Q Consensus 651 ~~~~L~~L~l~~~~~ 665 (835)
.+++|+.|++++|+-
T Consensus 195 ~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 195 GLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCSEEECCSEEE
T ss_pred cCCCCCEEEccCCcC
Confidence 899999999998863
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=6.8e-13 Score=129.94 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=93.6
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
..+|..+. ++|++|++++| .++. ..+..+..+++|++|++++|.... ..+..|..+++|++|+|++|.++.+|.
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n-~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQN-TIKV-IPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSS-CCCE-ECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCCCccC--cCCCEEECCCC-cCCC-cCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 34444332 56777777776 3432 122346667777777777776443 335667777888888888888877766
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
.|..+++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..|..+++|++|++++|+-
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAF---QDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHc---CCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCc
Confidence 46777888888888877 776655543 667788888888887776 3445567777888888887763
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=1.7e-12 Score=118.62 Aligned_cols=130 Identities=21% Similarity=0.171 Sum_probs=96.9
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhcccccc
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLK 603 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~ 603 (835)
.++|+.|++++| .+.++.++..+..+++|++|++++|..... ..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 367778888887 465455666677788888888888865443 567788888888888888887 777777888899
Q ss_pred EEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHH---HHHhhCCCccEEEccC
Q 003270 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNG 662 (835)
Q Consensus 604 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~ 662 (835)
+|++++|+ +++.... ..+..+++|++|++++|.+++. .+ ..+..+++|++|++++
T Consensus 92 ~L~ls~N~-i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTI--EPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSC-CCSHHHH--GGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCc-CCChHHH--HHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCCC
Confidence 99998888 7764321 1246788899999999888762 22 5688888999888763
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=3.6e-13 Score=141.29 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcccccc
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLK 603 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~ 603 (835)
..++..+.+.++ +...........|++|+.+++.+|. +..++..+|.+|++|+++++.+| +..++. +|.+|++|+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 455566666653 3333344334457888888888766 44555667888888888888887 666655 788888888
Q ss_pred -EEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEc
Q 003270 604 -VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 660 (835)
Q Consensus 604 -~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 660 (835)
.+.+.+ . ++...... |.+|++|+.+++++|++.. .-+..|.+|++|++++.
T Consensus 277 ~~l~l~~-~-l~~I~~~a---F~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-S-VTAIEFGA---FMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-T-CCEECTTT---TTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-c-ceEEchhh---hhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence 888877 3 66555444 4778888888888777765 34456778888888764
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=8.1e-14 Score=135.70 Aligned_cols=181 Identities=12% Similarity=0.051 Sum_probs=100.4
Q ss_pred CCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCE
Q 003270 72 EDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKS 151 (835)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 151 (835)
.|.|+++++.....+.- + ....+++++|++++ +.+....+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 6 ~C~~~~v~c~~~~l~~~--p--~~~~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSV--P--TGIPAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp EEETTEEECCSSCCSSC--C--SCCCTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCEEEecCCCccCC--C--CCCCCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 35678888876432210 0 01234566666666 3455444445566666666666666666554555566666666
Q ss_pred EEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHH
Q 003270 152 LNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRL 231 (835)
Q Consensus 152 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~ 231 (835)
|++++|.+++..+..+.++++|++|++++|.+..+.. ..+..+++|++|++++| .++. ..+.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------~~~~~l~~L~~L~l~~N-~l~~-~~~~ 142 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD----------------GVFDKLTQLKDLRLYQN-QLKS-VPDG 142 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------TTTTTCTTCCEEECCSS-CCSC-CCTT
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH----------------hHhccCCcCCEEECCCC-ccce-eCHH
Confidence 6666666654444445555555555555555543221 23455666777777666 3441 1122
Q ss_pred HHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCC
Q 003270 232 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLP 284 (835)
Q Consensus 232 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~ 284 (835)
.+..+++|++|++++|. +.. .+++|+.|+++.+. .+|..++.++
T Consensus 143 ~~~~l~~L~~L~l~~N~-~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNP-WDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTCTTCCEEECCSCC-BCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HhccCCCccEEEecCCC-eec--------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 35667777777777776 331 45566666665543 5565555444
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=1.7e-12 Score=121.42 Aligned_cols=132 Identities=23% Similarity=0.209 Sum_probs=105.3
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhccccc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQL 602 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L 602 (835)
..++|++|++++| .++++.++..+..+++|++|++++|..... ..+..+++|++|++++|.+++ +|..+..+++|
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3477888888888 566556777778888888888888885443 577888999999999999998 77788889999
Q ss_pred cEEecccccccchhhH-HHHHhcCCCCCccEEeCCCcccchHHHH---HHHhhCCCccEEEccCCC
Q 003270 603 KVLKLQACKYLTNTSL-ESLYKKGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 603 ~~L~l~~~~~l~~~~~-~~l~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~~~ 664 (835)
++|++++|. +++... .. +..+++|+.|++++|.+++. .+ ..+..+++|++|++++|.
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~---l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEP---LKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSS-CCSSGGGGG---GSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCc-cCcchhHHH---HhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCC
Confidence 999999997 876532 33 47889999999999988762 22 478889999999999986
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=2.1e-12 Score=125.60 Aligned_cols=148 Identities=20% Similarity=0.102 Sum_probs=93.5
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++++.+++++|.++ +..+..+..+++|++|++++| .++. ..+..+..+++|++|++++|..... ....+.
T Consensus 28 ~~l~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-------SLPNGVFDELTSLTQLYLGGN-KLQS-LPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFD 97 (208)
T ss_dssp TTCSEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTT
T ss_pred CCCcEEEcCCCccC-------cCChhhhcccccCcEEECCCC-ccCc-cChhhcCCCCCcCEEECCCCcCCcc-CHhHhc
Confidence 45666666666663 323334567777777777776 4542 1223356677777777777764432 234466
Q ss_pred hccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 575 SLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
.+++|++|++++|.+++++. .+..+++|++|++++|. +++..... +..+++|+.|++++|.+.. .++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~~--------~~~ 165 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGV---FDRLTSLQYIWLHDNPWDC--------TCP 165 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSCCBCC--------CTT
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHH---hccCCCccEEEecCCCeec--------CCC
Confidence 77777777777777777655 46677777777777776 66544332 2566777777777776653 355
Q ss_pred CccEEEccCCC
Q 003270 654 HLTHVSLNGCG 664 (835)
Q Consensus 654 ~L~~L~l~~~~ 664 (835)
+|+.|++..|.
T Consensus 166 ~l~~L~~~~n~ 176 (208)
T 2o6s_A 166 GIRYLSEWINK 176 (208)
T ss_dssp TTHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 66766666654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=2.4e-12 Score=129.79 Aligned_cols=147 Identities=19% Similarity=0.175 Sum_probs=102.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.+ ..++ .+..+++|++|++++| .+++ ++. +..+++|++|++++|...+..
T Consensus 37 ~~~l~~L~~L~l~~n~i--------~~l~-~l~~l~~L~~L~L~~N-~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~-- 101 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNI--------QSLA-GMQFFTNLKELHLSHN-QISD--LSP-LKDLTKLEELSVNRNRLKNLN-- 101 (263)
T ss_dssp HHHHTTCSEEECTTSCC--------CCCT-TGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSSCCSCCT--
T ss_pred hhhcCcCcEEECcCCCc--------ccch-HHhhCCCCCEEECCCC-ccCC--Chh-hccCCCCCEEECCCCccCCcC--
Confidence 45566777777777766 3444 4667778888888877 4543 333 677788888888887755421
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
.+.. ++|++|++++|.+++++ .+..+++|+.|++++|+ +++.. . +..+++|+.|++++|++++. ..+.
T Consensus 102 -~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~--~---l~~l~~L~~L~L~~N~i~~~---~~l~ 169 (263)
T 1xeu_A 102 -GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV--M---LGFLSKLEVLDLHGNEITNT---GGLT 169 (263)
T ss_dssp -TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG--G---GGGCTTCCEEECTTSCCCBC---TTST
T ss_pred -cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh--H---HccCCCCCEEECCCCcCcch---HHhc
Confidence 2333 78888888888888765 47778888888888887 77652 2 35678888888888888763 5567
Q ss_pred hCCCccEEEccCCC
Q 003270 651 YCTHLTHVSLNGCG 664 (835)
Q Consensus 651 ~~~~L~~L~l~~~~ 664 (835)
.+++|+.|++++|+
T Consensus 170 ~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 170 RLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCCCCEEEEEEEE
T ss_pred cCCCCCEEeCCCCc
Confidence 78888888888775
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=4.5e-12 Score=134.70 Aligned_cols=158 Identities=21% Similarity=0.120 Sum_probs=100.3
Q ss_pred CCcccccccceeEEEeecCCcccccccc-cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYI-NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~-~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
.++.|++++|.++ +..+..+. .+++|++|++++| ++.. ..+..+..+++|++|++++|.... ..+..|.
T Consensus 40 ~l~~L~Ls~N~l~-------~l~~~~~~~~l~~L~~L~L~~N-~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 109 (361)
T 2xot_A 40 YTALLDLSHNNLS-------RLRAEWTPTRLTNLHSLLLSHN-HLNF-ISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFS 109 (361)
T ss_dssp TCSEEECCSSCCC-------EECTTSSSSCCTTCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSCCCE-ECTTTTT
T ss_pred CCCEEECCCCCCC-------ccChhhhhhcccccCEEECCCC-cCCc-cChhhccCCCCCCEEECCCCcCCc-CCHHHhC
Confidence 4566777777664 22233344 6777777777777 4543 123446677777777777777433 2244577
Q ss_pred hccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 575 SLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
.+++|++|+|++|.+..+ +..|..+++|+.|+|++|. ++......+..+..+++|+.|++++|+++. ..+..+..++
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~ 187 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLP 187 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSC
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhcc
Confidence 777888888888877765 3467777788888888777 665543332112457778888888887775 3445566666
Q ss_pred C--ccEEEccCCCC
Q 003270 654 H--LTHVSLNGCGN 665 (835)
Q Consensus 654 ~--L~~L~l~~~~~ 665 (835)
. ++.|++++|+-
T Consensus 188 ~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 188 AWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHTTEECCSSCE
T ss_pred HhhcceEEecCCCc
Confidence 6 37778877764
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=2.2e-14 Score=160.86 Aligned_cols=188 Identities=16% Similarity=0.150 Sum_probs=127.6
Q ss_pred hhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCC-------------CCcccccccccCCcccEEe-ccCccccc
Q 003270 120 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-------------LGNGVQEIPINHDQLRRLE-ITKCRVMR 185 (835)
Q Consensus 120 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 185 (835)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 44667777777777775 567777777777777775553 3445566666777777776 5544332
Q ss_pred cccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC
Q 003270 186 VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL 265 (835)
Q Consensus 186 ~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L 265 (835)
.|+.+.+++|.+..... ..|+.|++++| .++ .+|. ++++++|++|++++|. ++ ..|..+. .+++|
T Consensus 424 ------~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n-~l~--~lp~-~~~l~~L~~L~Ls~N~-l~-~lp~~~~-~l~~L 488 (567)
T 1dce_A 424 ------DLRSKFLLENSVLKMEY--ADVRVLHLAHK-DLT--VLCH-LEQLLLVTHLDLSHNR-LR-ALPPALA-ALRCL 488 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHH--TTCSEEECTTS-CCS--SCCC-GGGGTTCCEEECCSSC-CC-CCCGGGG-GCTTC
T ss_pred ------hhhhhhhhcccccccCc--cCceEEEecCC-CCC--CCcC-ccccccCcEeecCccc-cc-ccchhhh-cCCCC
Confidence 23334444444443211 25788888887 465 2455 7788888888888887 66 4445554 78888
Q ss_pred cEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhh-HHHhhhccCccEEEccCCCcccccc
Q 003270 266 RILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSAS-MAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 266 ~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
+.|++++|. .+| .++.+++|++|++++| .+.+.. +..++.+++|++|++++|.+.+..|
T Consensus 489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 489 EVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 888888876 555 6778888888888886 677665 7788888899999998888655433
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.28 E-value=7e-12 Score=117.18 Aligned_cols=136 Identities=21% Similarity=0.120 Sum_probs=100.5
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++|+.+++++|.++ .+.+|..+..+++|++|++++| .+++ + ..+..+++|++|++++|...... +..+.
T Consensus 24 ~~L~~L~l~~n~l~------~~~i~~~~~~l~~L~~L~l~~n-~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSN------DGKIEGLTAEFVNLEFLSLINV-GLIS--V-SNLPKLPKLKKLELSENRIFGGL-DMLAE 92 (168)
T ss_dssp TSCSEEECCSCBCB------TTBCSSCCGGGGGCCEEEEESS-CCCC--C-SSCCCCSSCCEEEEESCCCCSCC-CHHHH
T ss_pred ccCCEEECCCCCCC------hhhHHHHHHhCCCCCEEeCcCC-CCCC--h-hhhccCCCCCEEECcCCcCchHH-HHHHh
Confidence 56666666666652 1366777778888888888888 4654 2 55778888888888888866532 55667
Q ss_pred hccccceeeecCccccCch--HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 575 SLQNLTMLDLSYTFLTNLE--PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
.+++|+.|++++|.+++++ ..+..+++|+.|++++|+ +++........+..+++|+.|++++|.+..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7889999999999988876 578888899999999988 776654111124778899999998887654
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=1e-11 Score=113.40 Aligned_cols=132 Identities=22% Similarity=0.102 Sum_probs=100.7
Q ss_pred CCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 494 ~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
.++++.+++++|.++ .+.+|..+..+++|++|++++| .+++. ..+..+++|++|++++|...+.. +..+
T Consensus 16 ~~~l~~L~l~~n~l~------~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSN------EGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCB------TTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHHH
T ss_pred CccCeEEEccCCcCC------hhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchH-HHHh
Confidence 356777777777662 1367777788899999999998 56543 56778899999999999866543 6677
Q ss_pred hhccccceeeecCccccCch--HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCC
Q 003270 574 RSLQNLTMLDLSYTFLTNLE--PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 637 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~ 637 (835)
..+++|++|++++|.+++++ ..+..+++|++|++++|+ +++........+..+++|+.|++++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 78999999999999999865 678899999999999998 8776552111236688999998864
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=1.3e-11 Score=121.62 Aligned_cols=132 Identities=18% Similarity=0.050 Sum_probs=86.0
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhh-hhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLS-ATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
++|+.|++++|.++ +..|..+..+++|++|++++| .+.. ++ ..+..+++|+.|++++|..... ....+
T Consensus 40 ~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~L~~N-~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-------KLEPGVFDSLINLKELYLGSN-QLGA--LPVGVFDSLTQLTVLDLGTNQLTVL-PSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSCCCCC-CTTTT
T ss_pred CCCCEEEcCCCccC-------ccCHHHhhCccCCcEEECCCC-CCCC--cChhhcccCCCcCEEECCCCcCCcc-ChhHh
Confidence 56677777777664 444566677777777777777 3432 33 3356677777777777764432 23446
Q ss_pred hhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 574 RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
..+++|++|++++|.++.+|..+..+++|+.|++++|+ +++..... +..+++|+.|++++|.+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGA---FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHH---HhCCCCCCEEEeeCCCcc
Confidence 67777777777777777777767777777777777776 66554432 356677777777777654
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.26 E-value=4e-12 Score=125.40 Aligned_cols=139 Identities=25% Similarity=0.140 Sum_probs=113.6
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
..+|..+ .++|++|++++| .+.. ..+..+..+++|++|++++|.... .....+..+++|+.|++++|.+++++.
T Consensus 32 ~~ip~~~--~~~L~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 32 ASVPAGI--PTNAQILYLHDN-QITK-LEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp SSCCSCC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCC--CCCCCEEEcCCC-ccCc-cCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCccChh
Confidence 5666544 389999999998 4543 345668899999999999998643 334568899999999999999999876
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
.|..+++|++|++++|. ++.. +.. +..+++|+.|++++|+++. ..+..+..+++|++|++++|+-
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~l-p~~---~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTEL-PRG---IERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSC-CTT---GGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCCc-cccc-Ccc---cccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCc
Confidence 57899999999999998 8744 333 3678999999999999986 3446688899999999999974
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=2e-13 Score=152.95 Aligned_cols=123 Identities=23% Similarity=0.212 Sum_probs=81.3
Q ss_pred CcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEe
Q 003270 527 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLK 606 (835)
Q Consensus 527 ~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~ 606 (835)
.|+.|++++| .++. +|. +..+++|+.|++++|.... . |..++.+++|+.|+|++|.++++| .++.+++|++|+
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~l~~-l-p~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNRLRA-L-PPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSCCCC-C-CGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCcccccc-c-chhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 4677777776 4543 554 6677777777777776552 2 556777777777777777777776 677777777777
Q ss_pred cccccccchhh-HHHHHhcCCCCCccEEeCCCcccchH--HHHHHHhhCCCccEEEc
Q 003270 607 LQACKYLTNTS-LESLYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSL 660 (835)
Q Consensus 607 l~~~~~l~~~~-~~~l~~~~~~~~L~~L~l~~n~~~~~--~~~~~l~~~~~L~~L~l 660 (835)
+++|. +++.. +..+ +.+++|+.|++++|++++. .....+..+++|+.|++
T Consensus 515 Ls~N~-l~~~~~p~~l---~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNR-LQQSAAIQPL---VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSC-CCSSSTTGGG---GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-CCCCCCcHHH---hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77776 66664 4443 5677777777777777652 12234455777777753
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=1.5e-11 Score=128.92 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCeeEEEccCCcchhhHHHHHHhh-CCcCcEEEcCCcccC
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSL-LRNLEALTLGRGQLG 136 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~i~ 136 (835)
+++++|.+++ .+...-...+.. +++|+.|+|++|.+.
T Consensus 25 ~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 25 NSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIK 62 (329)
T ss_dssp HHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEEC
T ss_pred CceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeE
Confidence 3678888887 344333345555 778888888888776
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.24 E-value=1e-11 Score=125.15 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=69.8
Q ss_pred HHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc-CCCCCcEE
Q 003270 118 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHL 196 (835)
Q Consensus 118 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~L~~L 196 (835)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+..+.. ..++|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEE
T ss_pred chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEE
Confidence 355666777777777766642 3 56667777777777777654333 5666667777776666654321 01455555
Q ss_pred EecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCC
Q 003270 197 SLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 248 (835)
Q Consensus 197 ~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ 248 (835)
++++|.+. ..+..+++|++|++++| .+++ ++ .+..+++|++|++++|.
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~--~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNN-KLKS--IV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTS-CCCB--CG-GGGGCTTCCEEECTTSC
T ss_pred EccCCccCCChhhcCcccccEEECCCC-cCCC--Ch-HHccCCCCCEEECCCCc
Confidence 55555443 33455556666666655 3442 12 34555556666665555
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.22 E-value=2.5e-11 Score=118.74 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=106.1
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++++.|++++|.++ +..+..+..+++|++|++++| .+.. ..+..+..+++|++|++++|..... ....|.
T Consensus 32 ~~l~~L~l~~n~i~-------~i~~~~~~~l~~L~~L~Ls~N-~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-------VIPPGAFSPYKKLRRIDLSNN-QISE-LAPDAFQGLRSLNSLVLYGNKITEL-PKSLFE 101 (220)
T ss_dssp TTCCEEECCSSCCC-------EECTTSSTTCTTCCEEECCSS-CCCE-ECTTTTTTCSSCCEEECCSSCCCCC-CTTTTT
T ss_pred cCCCEEECCCCcCC-------CcCHhHhhCCCCCCEEECCCC-cCCC-cCHHHhhCCcCCCEEECCCCcCCcc-CHhHcc
Confidence 56788888888874 333346788899999999998 4543 3356788899999999999986543 245678
Q ss_pred hccccceeeecCccccCch-HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 575 SLQNLTMLDLSYTFLTNLE-PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
.+++|++|++++|.+++++ ..|..+++|+.|++++|. +++.....+ ..+++|+.|++++|.+..
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTF---SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT---TTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHH---hCCCCCCEEEeCCCCcCC
Confidence 8999999999999999864 478899999999999998 887765543 778899999999998753
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.6e-11 Score=115.55 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=71.8
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++|+.+++++|.+ ..++......++|++|++++| .+++ + ..+..+++|++|++++|.... ..+
T Consensus 15 ~~~~~~L~~L~l~~n~l--------~~i~~~~~~~~~L~~L~Ls~N-~l~~--~-~~l~~l~~L~~L~Ls~N~l~~-~~~ 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI--------PVIENLGATLDQFDAIDFSDN-EIRK--L-DGFPLLRRLKTLLVNNNRICR-IGE 81 (176)
T ss_dssp EECTTSCEEEECTTSCC--------CSCCCGGGGTTCCSEEECCSS-CCCE--E-CCCCCCSSCCEEECCSSCCCE-ECS
T ss_pred cCCcCCceEEEeeCCCC--------chhHHhhhcCCCCCEEECCCC-CCCc--c-cccccCCCCCEEECCCCcccc-cCc
Confidence 34455566666666655 233332223336666666666 3443 2 345556666666666665432 212
Q ss_pred HhhhhccccceeeecCccccCchH--HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
..+..+++|++|++++|.+..+|. .+..+++|+.|++++|+ ++.........+..+++|+.|++++|...+
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 234566666666666666665554 55566666666666665 543322211112345566666666655543
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=3e-12 Score=123.27 Aligned_cols=151 Identities=18% Similarity=0.142 Sum_probs=119.4
Q ss_pred cCcCCCCcccccccceeEEEeecCCccccc------ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCC
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSD------AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQS 564 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~------~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 564 (835)
+...+.++.++++.+.+. +.+|. .+..+++|++|++++| .+++ ++ .+..+++|++|++++|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~-------~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELH-------GMIPPIEKMDATLSTLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHHTTCCCCTTCSEEECC-------BCCTTCCCCHHHHHHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEEE
T ss_pred HHhcccccCcchheeEec-------cccCcHhhhhHHHhcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCCc
Confidence 344556677777776664 44444 7889999999999998 5655 55 788899999999999986
Q ss_pred cCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHH
Q 003270 565 IGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSA 644 (835)
Q Consensus 565 ~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~ 644 (835)
... +..+..+++|++|++++|.++++| .+..+++|++|++++|+ +++.... ..+..+++|+.|++++|.+++ .
T Consensus 83 ~~l--~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~--~~l~~l~~L~~L~l~~N~l~~-~ 155 (198)
T 1ds9_A 83 KKI--ENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEI--DKLAALDKLEDLLLAGNPLYN-D 155 (198)
T ss_dssp CSC--SSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHH--HHHTTTTTCSEEEECSCHHHH-H
T ss_pred ccc--cchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHH--HHHhcCCCCCEEEecCCcccc-c
Confidence 532 456777899999999999999987 68889999999999998 8765431 124789999999999999876 2
Q ss_pred HH----------HHHhhCCCccEEE
Q 003270 645 IE----------ELLAYCTHLTHVS 659 (835)
Q Consensus 645 ~~----------~~l~~~~~L~~L~ 659 (835)
++ ..+..+++|++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccccchHHHHHHHHHhCCCcEEEC
Confidence 32 3478899999997
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.20 E-value=4.6e-11 Score=116.83 Aligned_cols=134 Identities=15% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCCcccccccceeEEEeecCCcccc-cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
+.++.|++++|.++ +..+ ..+..+++|++|++++| .++. ..+..+..+++|++|++++|...... +..+
T Consensus 32 ~~~~~L~L~~N~l~-------~~~~~~~~~~l~~L~~L~L~~N-~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~ 101 (220)
T 2v70_A 32 QYTAELRLNNNEFT-------VLEATGIFKKLPQLRKINFSNN-KITD-IEEGAFEGASGVNEILLTSNRLENVQ-HKMF 101 (220)
T ss_dssp TTCSEEECCSSCCC-------EECCCCCGGGCTTCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSCCCCCC-GGGG
T ss_pred CCCCEEEcCCCcCC-------ccCchhhhccCCCCCEEECCCC-cCCE-ECHHHhCCCCCCCEEECCCCccCccC-HhHh
Confidence 34678888888884 2212 34788999999999998 4653 23446889999999999999865543 5678
Q ss_pred hhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 574 RSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
..+++|++|++++|.++++ |..|..+++|++|++++|. +++..+..+ ..+++|+.|++++|.+..
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAF---DTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTT---TTCTTCCEEECCSCCEEC
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHh---cCCCCCCEEEecCcCCcC
Confidence 9999999999999999987 5588999999999999998 888766654 788999999999998864
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.18 E-value=2.1e-11 Score=129.47 Aligned_cols=144 Identities=18% Similarity=0.157 Sum_probs=73.1
Q ss_pred CcEEEcCCcccChhhHHhhc-CCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEec
Q 003270 125 LEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 199 (835)
Q Consensus 125 L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~ 199 (835)
++.|++++|.+++..+..+. .+++|++|++++|.+++..+..+.++++|++|++++|.+..+. ..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45555555555544444444 4555555555555554433344455555555555555544332 234555555555
Q ss_pred ccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHH----hcCCCCCEEeCCCCCCCChHHHHHHHHhCCC--CcEEe
Q 003270 200 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAA----TSCPQLESLDMSNCSCVSDESLREIALSCAN--LRILN 269 (835)
Q Consensus 200 ~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~----~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~--L~~L~ 269 (835)
+|.+. ..+..+++|++|++++| .++. ++..+ ..+++|++|+|++|. ++...+..+. .++. ++.|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~~~l~~l~ 195 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISR--FPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ-KLPAWVKNGLY 195 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCS--CCGGGTC----CTTCCEEECCSSC-CCCCCHHHHH-HSCHHHHTTEE
T ss_pred CCcccEECHHHhCCcccCCEEECCCC-cCCe--eCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhh-hccHhhcceEE
Confidence 55443 34556666666666666 3442 22221 456777777777776 5543333333 4444 25566
Q ss_pred cCCC
Q 003270 270 SSYC 273 (835)
Q Consensus 270 l~~~ 273 (835)
+++|
T Consensus 196 l~~N 199 (361)
T 2xot_A 196 LHNN 199 (361)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 6655
No 127
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=3.3e-11 Score=127.59 Aligned_cols=137 Identities=23% Similarity=0.185 Sum_probs=108.3
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh-----hccccceeeecCccccC-----chH
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR-----SLQNLTMLDLSYTFLTN-----LEP 594 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~Ls~~~~~~-----l~~ 594 (835)
.++|++|++++| .+++.++......+++|++|++++|.. ++.+...+. ..++|++|+|++|.++. ++.
T Consensus 100 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 100 RHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 478999999998 687777777677788999999999974 444454443 45889999999999874 455
Q ss_pred HHhccccccEEecccccccchhhHHHHHh-cCCCCCccEEeCCCcccchHH---HHHHHhhCCCccEEEccCCC
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYK-KGSLPALQELDLSYGTLCQSA---IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~n~~~~~~---~~~~l~~~~~L~~L~l~~~~ 664 (835)
.+..+++|++|+|++|. +++.+...+.. +..+++|+.|++++|.+++.+ +...+..+++|++|++++|+
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 67788999999999998 88877666533 466789999999999998743 44556678999999999996
No 128
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.16 E-value=7.7e-11 Score=126.89 Aligned_cols=144 Identities=16% Similarity=0.246 Sum_probs=82.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.+|..++.+.+..+.. ..-...|..+..++.+..... .+. ...+..+.+|+.+.+.++ +..++.
T Consensus 249 f~~~~~l~~~~~~~~~~--------~i~~~~F~~~~~l~~~~~~~~-~i~----~~~F~~~~~L~~i~l~~~--i~~I~~ 313 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL--------RIGGSLFYNCSGLKKVIYGSV-IVP----EKTFYGCSSLTEVKLLDS--VKFIGE 313 (394)
T ss_dssp TTTCSSCCEEEECCTTC--------EECSCTTTTCTTCCEEEECSS-EEC----TTTTTTCTTCCEEEECTT--CCEECT
T ss_pred ccccccceeEEcCCCcc--------eeeccccccccccceeccCce-eec----cccccccccccccccccc--cceech
Confidence 55666666666654432 111234556666666666553 121 233556777777777643 444555
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
.+|.+|++|+.+++.++ ++.+.. +|.+|.+|+.+.+..+ ++..... +|.+|++|+.+++..+ +. .+...|
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~---aF~~C~~L~~i~lp~~-~~--~~~~~F 384 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN---AFQGCINLKKVELPKR-LE--QYRYDF 384 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT---TBTTCTTCCEEEEEGG-GG--GGGGGB
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH---HhhCCCCCCEEEECCC-CE--Ehhhee
Confidence 66777777777777543 554543 6777777777777643 4433333 2466777777777654 21 123456
Q ss_pred hhCCCccEE
Q 003270 650 AYCTHLTHV 658 (835)
Q Consensus 650 ~~~~~L~~L 658 (835)
.+|++|+++
T Consensus 385 ~~c~~L~~I 393 (394)
T 4fs7_A 385 EDTTKFKWI 393 (394)
T ss_dssp CTTCEEEEE
T ss_pred cCCCCCcEE
Confidence 666666654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=4.3e-11 Score=112.65 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=108.6
Q ss_pred ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcc
Q 003270 521 AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESC 599 (835)
Q Consensus 521 ~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~ 599 (835)
.+.++.+|++|++++| .++. ++......++|+.|++++|...+. ..+..+++|++|++++|.++++|+ .+..+
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred hcCCcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 3567899999999999 5664 555444456999999999986543 578899999999999999999876 56899
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHH----HHhhCCCccEEEccCCCC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEE----LLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~----~l~~~~~L~~L~l~~~~~ 665 (835)
++|++|++++|. +++... +..+..+++|+.|++++|.++. ++. .+..+++|+.|++++|..
T Consensus 88 ~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGD--LDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCc-CCcchh--hHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999998 765433 2234779999999999999975 333 588999999999998863
No 130
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=9.4e-11 Score=124.09 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=97.1
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCCCCCcEEe
Q 003270 211 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQ 290 (835)
Q Consensus 211 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 290 (835)
++|++|++++| .+++.++......+++|++|+|++|. +++.....++..+. ...++|++|+
T Consensus 101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~-----------------~~~~~L~~L~ 161 (372)
T 3un9_A 101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLL-----------------HDQCQITTLR 161 (372)
T ss_dssp SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHH-----------------STTCCCCEEE
T ss_pred CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHH-----------------hcCCccceee
Confidence 56777777776 46665555555555667777777776 66666555542210 0123444444
Q ss_pred cCCCCCCChhhHHH----hhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcce
Q 003270 291 LHSCEGITSASMAA----ISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHR 366 (835)
Q Consensus 291 l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~ 366 (835)
+++| .+++..... +..+++|++|++++|.+.......+.. .+..+++|+.
T Consensus 162 Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------------------------~L~~~~~L~~ 215 (372)
T 3un9_A 162 LSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------------------------QLDRNRQLQE 215 (372)
T ss_dssp CCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-------------------------HGGGCSCCCE
T ss_pred CCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-------------------------HHhcCCCcCe
Confidence 4444 565544333 355677888888887643211100000 2455667888
Q ss_pred eeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCC--ccEEE
Q 003270 367 INITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM--LKSLV 427 (835)
Q Consensus 367 L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~--L~~L~ 427 (835)
|++++|.+++. +...+......+++|++|++++ |.+++.+...+..+..... ++.+.
T Consensus 216 L~Ls~N~i~~~---g~~~l~~~L~~~~~L~~L~Ls~-N~i~~~g~~~L~~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 216 LNVAYNGAGDT---AALALARAAREHPSLELLHLYF-NELSSEGRQVLRDLGGAAEGGARVVV 274 (372)
T ss_dssp EECCSSCCCHH---HHHHHHHHHHHCSSCCEEECTT-SSCCHHHHHHHHHCC------CEEEC
T ss_pred EECCCCCCCHH---HHHHHHHHHHhCCCCCEEeccC-CCCCHHHHHHHHHHhcCCCccchhhH
Confidence 88888888763 2333444444678899999999 5898888777765433332 55554
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.12 E-value=1.9e-10 Score=123.79 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=38.3
Q ss_pred HHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEecc
Q 003270 117 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 179 (835)
Q Consensus 117 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 179 (835)
.+|..|.+|+.+.+.. .++.....+|.+|++|+.+++.++ ++.--...+.++.+|+.+.+.
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 4677788888888864 355555667778888888887654 222122345566666665554
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.11 E-value=6.8e-11 Score=112.90 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=64.9
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
+.+|..+. .+|++|++++| .+........+..+++|++|++++|...+.. +..+..+++|++|++++|++++++.
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHH
Confidence 44554332 36677777776 3432111123556666666666666544322 4456666666666666666665443
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
.|..+++|++|++++|+ +++..+..+ ..+++|+.|++++|.+.
T Consensus 97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSF---EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSS---TTCTTCCEEECTTCCBC
T ss_pred HhcCCCCCCEEECCCCc-CCeeCHHHh---hcCCCCCEEEeCCCCcc
Confidence 35566666666666665 555444332 45566666666666554
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.08 E-value=5e-11 Score=113.83 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=104.9
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l 607 (835)
+.++++++ +++. +|..+ .++|++|++++|..........+..+++|++|++++|.++++ |..|..+++|++|++
T Consensus 11 ~~l~~s~~-~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGR-GLKE--IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTS-CCSS--CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CcCc--CccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 67899987 5543 55433 238999999999865443112489999999999999999997 568999999999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
++|. +++..+..+ ..+++|++|++++|++++ ..+..+..+++|++|++++|+-.
T Consensus 86 s~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENK-IKEISNKMF---LGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCC-CCEECSSSS---TTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCccCHHHh---cCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCcc
Confidence 9998 887765543 789999999999999987 56778889999999999999743
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=8.5e-12 Score=120.07 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=69.1
Q ss_pred HHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEE
Q 003270 118 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 197 (835)
Q Consensus 118 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~ 197 (835)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l----------- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL----------- 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-----------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-----------
Confidence 55555555555555555554 33 4455555555555555543 3444333344444444444433321
Q ss_pred ecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHH---------HHHHHhCCCCcEE
Q 003270 198 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL---------REIALSCANLRIL 268 (835)
Q Consensus 198 l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~---------~~~~~~~~~L~~L 268 (835)
..+..+++|++|++++| .+++......+..+++|++|++++|. +.+..+ ..+...+++|+.|
T Consensus 109 -------~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 109 -------SGIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp -------HHHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred -------CccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 24566677777777776 35532222456777777777777776 543322 1222366666666
Q ss_pred e
Q 003270 269 N 269 (835)
Q Consensus 269 ~ 269 (835)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=2.2e-10 Score=109.23 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=67.1
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
..+|..+ .++|++|++++| .++ .++..+..+++|+.|++++|..... .+..|..+++|++|++++|.+++++.
T Consensus 23 ~~ip~~~--~~~l~~L~L~~n-~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 23 KVLPKGI--PRDVTELYLDGN-QFT--LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp SSCCSCC--CTTCCEEECCSS-CCC--SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CcCCCCC--CCCCCEEECCCC-cCc--hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHH
Confidence 4444433 256777777776 444 2445566666666666666664432 23456666666666666666666544
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCccc
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 640 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~ 640 (835)
.|..+++|++|++++|. ++...... +..+++|+.|++++|.+
T Consensus 97 ~f~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGND-ISVVPEGA---FNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTTCTTCCEEECCSSC-CCBCCTTT---TTTCTTCCEEECCSSCE
T ss_pred HhCCCCCCCEEECCCCC-CCeeChhh---hhcCccccEEEeCCCCe
Confidence 56666666666666666 55443332 24556666666666655
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=2.1e-10 Score=109.47 Aligned_cols=125 Identities=22% Similarity=0.181 Sum_probs=103.5
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l 607 (835)
+.++++++ +++. +|..+ .++|++|++++|..... +..+..+++|+.|++++|.+++++. .|.++++|++|++
T Consensus 13 ~~l~~~~~-~l~~--ip~~~--~~~l~~L~L~~n~i~~i--p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNK-GLKV--LPKGI--PRDVTELYLDGNQFTLV--PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTS-CCSS--CCSCC--CTTCCEEECCSSCCCSC--CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CCCc--CCCCC--CCCCCEEECCCCcCchh--HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 56888887 4543 55432 36899999999986533 5789999999999999999999765 7999999999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
++|. +++..+..+ ..+++|+.|++++|+++. ..+..|..+++|++|++++|+-
T Consensus 86 s~N~-l~~i~~~~f---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 86 SYNR-LRCIPPRTF---DGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSC-CCBCCTTTT---TTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCc-cCEeCHHHh---CCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCe
Confidence 9998 888766554 789999999999999986 3445688899999999999974
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=2.1e-09 Score=114.89 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=38.9
Q ss_pred eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecC
Q 003270 357 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 430 (835)
Q Consensus 357 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 430 (835)
.+.+|++|+.+++..|.++......+ .+.+|+.+.+.+ .++.....+| .+|++|+.+.+..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF--------~~~~L~~l~lp~--~l~~I~~~aF---~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTF--------VYAGIEEVLLPV--TLKEIGSQAF---LKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTT--------TTCCCSEEECCT--TCCEECTTTT---TTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcceEechhhE--------eecccCEEEeCC--chheehhhHh---hCCCCCCEEecCC
Confidence 46677777777777766654332221 346777777765 4666655666 6777777777764
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=3.1e-10 Score=131.39 Aligned_cols=112 Identities=18% Similarity=0.063 Sum_probs=54.2
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..++.|+.|++++|.+ ..+|..+..+++|++|+|++| .++ .+|..+..+++|+.|+|++|... .. +
T Consensus 220 ~~~l~~L~~L~Ls~n~l--------~~l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~l-p 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI--------FNISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLT-SL-P 286 (727)
T ss_dssp --CCCCCCEEECTTSCC--------SCCCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCS-SC-C
T ss_pred hccCCCCcEEECCCCCC--------CCCChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCC-cc-C
Confidence 34444455555555544 334444444555555555554 333 24444455555555555555533 11 3
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
..++.+++|++|+|++|.++.+|..|+.+++|+.|+|++|+ +++.
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~ 331 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQ 331 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSH
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCC
Confidence 44555555555555555555555555555555555555554 4443
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.00 E-value=4e-10 Score=102.86 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=79.1
Q ss_pred ccccccccCCCCccccccCcccccCccceEeccCCCCccccccccccccEEecccccchhhhhh---cCCccceeecccC
Q 003270 706 LLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSC 782 (835)
Q Consensus 706 ~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~ 782 (835)
.|+.|++++|. +++..+..+..|++|++|++++|..+++. .++.+.. .+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~----------------gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDG----------------CLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHH----------------HHHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHH----------------HHHHHHhcccccCCCCEEEcCCC
Confidence 47777777776 66666666666777777777777666654 3455553 2578999999999
Q ss_pred c-CChhHHHHHHhcCCCcceeecccccCCCchH--HHHHHHhCCcch
Q 003270 783 N-IDEEGVESAITQCGMLETLDVRFCPKICSTS--MGRLRAACPSLK 826 (835)
Q Consensus 783 ~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~--~~~~~~~~p~l~ 826 (835)
. |||.++.. +..|++|++|++++|+.+++.+ ...+...+|+++
T Consensus 125 ~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 125 GNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCHHHHHH-GGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CcCCHHHHHH-HhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8 99999987 6789999999999999999975 567777788765
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=1.6e-10 Score=133.87 Aligned_cols=137 Identities=25% Similarity=0.183 Sum_probs=106.8
Q ss_pred ccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHH
Q 003270 517 VLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF 596 (835)
Q Consensus 517 ~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~ 596 (835)
..+..+..+++|+.|+|++| .+. .++..+..+++|++|+|++|... .. +..++.+++|+.|+|++|.++.+|..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIF--NISANIFKYDFLTRLYLNGNSLT-EL-PAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp -------CCCCCCEEECTTS-CCS--CCCGGGGGCCSCSCCBCTTSCCS-CC-CGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred cChhhhccCCCCcEEECCCC-CCC--CCChhhcCCCCCCEEEeeCCcCc-cc-ChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 34667888999999999998 454 37767779999999999999866 33 678999999999999999999999999
Q ss_pred hccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC-ccEEEccCCC
Q 003270 597 ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH-LTHVSLNGCG 664 (835)
Q Consensus 597 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~-L~~L~l~~~~ 664 (835)
..+++|++|+|++|. ++.. +.. ++.+++|+.|++++|.+++ .++..+..+.. +..+++++|.
T Consensus 290 ~~l~~L~~L~L~~N~-l~~l-p~~---~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTTL-PWE---FGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp GGGTTCSEEECCSSC-CCCC-CSS---TTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCEEECCCCC-CCcc-Chh---hhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCc
Confidence 999999999999997 7744 333 4889999999999999998 57766654422 2235666664
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=5.6e-10 Score=105.09 Aligned_cols=129 Identities=19% Similarity=0.105 Sum_probs=75.9
Q ss_pred CcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc
Q 003270 497 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 576 (835)
Q Consensus 497 L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 576 (835)
.+.++++++.+ ..+|..+ .++|++|++++| .++. ..+..+..+++|++|++++|..... .+..+..+
T Consensus 9 ~~~l~~~~~~l--------~~~p~~~--~~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 75 (177)
T 2o6r_A 9 GTEIRCNSKGL--------TSVPTGI--PSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKL 75 (177)
T ss_dssp TTEEECCSSCC--------SSCCTTC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTC
T ss_pred CCEEEecCCCC--------ccCCCCC--CCCCcEEEeCCC-cccE-eCHHHhcCcccccEEECCCCcceEe-ChhHccCC
Confidence 34555555555 4444332 367777777776 3432 2223356667777777777764432 23445667
Q ss_pred cccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 577 QNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
++|++|++++|.+++++. .+..+++|++|++++|. +++..... +..+++|+.|++++|.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSCBCC
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHH---hcCCcccCEEEecCCCeec
Confidence 777777777777776554 45666777777777765 65443322 2456667777777766654
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=6.2e-09 Score=111.25 Aligned_cols=151 Identities=13% Similarity=0.161 Sum_probs=76.5
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
|.+|++|+.++++.|.++ .++...-.+.+|+.+.+..+ +.. --...|.+|++|+.+.+.++ +..++.
T Consensus 176 F~~c~~L~~l~l~~n~l~--------~I~~~aF~~~~L~~l~lp~~--l~~-I~~~aF~~~~~L~~l~l~~~--l~~I~~ 242 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT--------KLPASTFVYAGIEEVLLPVT--LKE-IGSQAFLKTSQLKTIEIPEN--VSTIGQ 242 (401)
T ss_dssp TTTCTTCCEEECTTSCCS--------EECTTTTTTCCCSEEECCTT--CCE-ECTTTTTTCTTCCCEECCTT--CCEECT
T ss_pred hhCcccCCeeecCCCcce--------EechhhEeecccCEEEeCCc--hhe-ehhhHhhCCCCCCEEecCCC--ccCccc
Confidence 666777777777666653 23332222566777776642 221 11233556666666666653 334444
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccc-----hhhHHHHHhcCCCCCccEEeCCCcccchHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLT-----NTSLESLYKKGSLPALQELDLSYGTLCQSA 644 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~-----~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~ 644 (835)
.+|.+ .+|+.+.+. +.+..++. +|.+|++|+++.+.++. +. ..... +|..|++|+.+++.++ +.. .
T Consensus 243 ~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~---aF~~c~~L~~l~l~~~-i~~-I 314 (401)
T 4fdw_A 243 EAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPY---CLEGCPKLARFEIPES-IRI-L 314 (401)
T ss_dssp TTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTT---TTTTCTTCCEECCCTT-CCE-E
T ss_pred ccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHH---HhhCCccCCeEEeCCc-eEE-E
Confidence 55555 566666663 33444433 56666666666666544 22 11111 2345555555555532 222 1
Q ss_pred HHHHHhhCCCccEEEccC
Q 003270 645 IEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l~~ 662 (835)
-...|.+|++|+++.+..
T Consensus 315 ~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CTTTTTTCCSCCEEEECT
T ss_pred hhhhhcCCCCccEEEECc
Confidence 124455555555555543
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=1.6e-09 Score=102.03 Aligned_cols=127 Identities=22% Similarity=0.167 Sum_probs=75.7
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~ 606 (835)
.+.++++++ +++. ++. ...++|++|++++|.... ..+..+..+++|++|++++|.+++++. .+..+++|++|+
T Consensus 9 ~~~l~~~~~-~l~~--~p~--~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSK-GLTS--VPT--GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSS-CCSS--CCT--TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCC-CCcc--CCC--CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 355666665 3432 332 123567777777766443 223445667777777777777776554 456677777777
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
+++|. +++.....+ ..+++|+.|++++|+++. ..+..+..+++|++|++++|+-
T Consensus 83 l~~N~-l~~~~~~~~---~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 83 LHENK-LQSLPNGVF---DKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCC-ccccCHHHh---hCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence 77766 665443332 556677777777776664 2334456667777777777653
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.92 E-value=2.5e-08 Score=107.16 Aligned_cols=127 Identities=16% Similarity=0.219 Sum_probs=58.2
Q ss_pred ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcc
Q 003270 521 AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESC 599 (835)
Q Consensus 521 ~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~ 599 (835)
.|.+|.+|+.+.+... +.. --...+.+|++|+.+.+... +..++..+|.+|++|+++++..+ ++.+.. +|.+|
T Consensus 260 aF~~c~~L~~i~lp~~--~~~-I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVS-IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeeecccccEEecccc--cce-ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3455555555555542 111 01123445555666555421 33333455666666666666543 333333 56666
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
.+|+++.|..+ ++...... |.+|++|+.+++.++... ...+..+.+|+.+.+..
T Consensus 334 ~~L~~i~ip~s--v~~I~~~a---F~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 334 EQLERIAIPSS--VTKIPESA---FSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCCEEEECTT--CCBCCGGG---GTTCTTCCEEEESSCHHH----HHTCBCCCCC-------
T ss_pred CCCCEEEECcc--cCEEhHhH---hhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCC
Confidence 66666666432 33333322 355666666666655321 13344555666665543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.75 E-value=4.2e-08 Score=105.42 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=5.3
Q ss_pred CCCCCccEEEe
Q 003270 418 GGCPMLKSLVL 428 (835)
Q Consensus 418 ~~~~~L~~L~l 428 (835)
..|.+|+.+.+
T Consensus 134 ~~c~~L~~i~l 144 (394)
T 4gt6_A 134 HHCEELDTVTI 144 (394)
T ss_dssp TTCTTCCEEEC
T ss_pred hhhcccccccc
Confidence 44444554444
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=5.1e-08 Score=91.91 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=65.9
Q ss_pred hhhcCCCccEEeccCCCCcCchhhH----hhhhccccceeeecCccccC-----chHHHhccccccEEecccccccchhh
Q 003270 547 TTTSCPLIESLILMSCQSIGPDGLY----SLRSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTS 617 (835)
Q Consensus 547 ~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~ 617 (835)
.+...++|++|++++|..+++.+.. .+...++|++|+|++|.+.. +...+...++|++|+|++|. +++.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 3444555555555555223333322 23344566666666666652 33345556667777777766 66665
Q ss_pred HHHHHh-cCCCCCccEEeC--CCcccchHH---HHHHHhhCCCccEEEccCCC
Q 003270 618 LESLYK-KGSLPALQELDL--SYGTLCQSA---IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 618 ~~~l~~-~~~~~~L~~L~l--~~n~~~~~~---~~~~l~~~~~L~~L~l~~~~ 664 (835)
...+.. +...++|++|++ ++|.+++.+ +.+.+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 555532 355566777777 667766543 34555566677777777664
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.73 E-value=1.6e-08 Score=92.32 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=63.5
Q ss_pred cccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc----cccceeeecCcc-ccC-
Q 003270 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL----QNLTMLDLSYTF-LTN- 591 (835)
Q Consensus 518 l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~Ls~~~-~~~- 591 (835)
+|.....-..|++||+++|. +++.++.. +..|++|++|++++|..+++.+...+..+ ++|++|+|++|. +++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CCcccCCCceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 34433334579999999995 88887765 47899999999999998888877777764 356666665553 442
Q ss_pred chHHHhccccccEEecccccccchh
Q 003270 592 LEPVFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 592 l~~~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
--..+..+++|++|++++|+.+++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHhcCCCCCEEECCCCCCCCch
Confidence 1123344555555555555555543
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.70 E-value=1.5e-08 Score=94.29 Aligned_cols=104 Identities=25% Similarity=0.202 Sum_probs=60.1
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~ 606 (835)
.+.+++++| .++. +|..+ .++|++|++++|...+.. +..|..+++|++|++++|++++++. .|..+++|++|+
T Consensus 11 ~~~l~~s~n-~l~~--ip~~~--~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGK-SLAS--VPTGI--PTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTS-CCSS--CCSCC--CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCC-CcCc--cCccC--CCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 345555554 3332 33222 245566666665543322 4456667777777777777776655 456677777777
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
+++|. +++.....+ ..+++|+.|++++|.+.
T Consensus 85 L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQ-LKSIPRGAF---DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSC-CCCCCTTTT---TTCTTCCEEECCSSCBC
T ss_pred CCCCc-cCEeCHHHh---cCCCCCCEEEeCCCCCC
Confidence 77766 665544332 55667777777777654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=3.6e-08 Score=103.23 Aligned_cols=207 Identities=16% Similarity=0.220 Sum_probs=118.8
Q ss_pred HHHHHHHh--cCCCeeEEEccCCcchh--------hHHHHHHhhCCcCcEEEcCCcccC---------hhhHHhhcCCCC
Q 003270 88 EQFEDVCQ--RYPNATEVNIYGAPAIH--------LLVMKAVSLLRNLEALTLGRGQLG---------DAFFHALADCSM 148 (835)
Q Consensus 88 ~~~~~~~~--~~~~l~~L~l~~~~~~~--------~~~~~~l~~~~~L~~L~l~~~~i~---------~~~~~~l~~~~~ 148 (835)
+.+.+++. ....++.|.+..+. .. ..+..+...+++|+.|.+...... +.+...+..+++
T Consensus 95 ~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~ 173 (362)
T 2ra8_A 95 NLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL 173 (362)
T ss_dssp CHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTT
T ss_pred HHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCC
Confidence 34555654 33457888887532 22 123334567889999999754321 124556678899
Q ss_pred CCEEEecCCCCCcccccccccCCcccEEeccCcccccc-----c-cCCCCCcEEEeccc--c------h---HHHh--hc
Q 003270 149 LKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV-----S-IRCPQLEHLSLKRS--N------M---AQAV--LN 209 (835)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~-~~l~~L~~L~l~~~--~------i---~~~~--~~ 209 (835)
|+.|+++++.- -.++. + .+++|++|++..+.+..- . ..+|+|++|+|+.+ . + ...+ ..
T Consensus 174 L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 174 LNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp CCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 99999988731 12333 2 377888888887776431 1 25778888877521 1 1 1122 24
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHH--hcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCCCCCc
Q 003270 210 CPLLHLLDIASCHKLSDAAIRLAA--TSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLT 287 (835)
Q Consensus 210 ~~~L~~L~l~~~~~l~~~~l~~~~--~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~ 287 (835)
+|+|++|++.+| .+.+......+ ..+++|++|+|+.|. +++.+...+... +..+++|+
T Consensus 251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~------------------L~~l~~L~ 310 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH------------------VDKIKHLK 310 (362)
T ss_dssp CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT------------------HHHHTTCS
T ss_pred CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh------------------cccCCcce
Confidence 677777777776 35543322222 245677777777776 776665555411 11223444
Q ss_pred EEecCCCCCCChhhHHHhhhccCccEEEccCCC
Q 003270 288 VLQLHSCEGITSASMAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 288 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 320 (835)
.|+++.| .+++.....+...- ...++++.++
T Consensus 311 ~L~L~~n-~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 311 FINMKYN-YLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp EEECCSB-BCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred EEECCCC-cCCHHHHHHHHHHc-CCEEEecCCc
Confidence 4444443 67777777666522 3456776654
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.68 E-value=2e-08 Score=93.69 Aligned_cols=85 Identities=22% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCc
Q 003270 552 PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPAL 630 (835)
Q Consensus 552 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L 630 (835)
++|++|++++|...+.. +..+..+++|++|+|++|+++++|. .|..+++|++|++++|. +++..... +..+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~---~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGA---FDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTC
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHH---hccccCC
Confidence 44555555555533321 3456666666666666666666655 34566666666666666 55443322 2556666
Q ss_pred cEEeCCCcccc
Q 003270 631 QELDLSYGTLC 641 (835)
Q Consensus 631 ~~L~l~~n~~~ 641 (835)
+.|++++|.+.
T Consensus 108 ~~L~L~~N~~~ 118 (174)
T 2r9u_A 108 THIYLYNNPWD 118 (174)
T ss_dssp SEEECCSSCBC
T ss_pred CEEEeCCCCcc
Confidence 66666666654
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2.7e-08 Score=104.11 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=71.0
Q ss_pred ccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh--hccccceeeecC--cc------
Q 003270 519 SDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR--SLQNLTMLDLSY--TF------ 588 (835)
Q Consensus 519 ~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~Ls~--~~------ 588 (835)
+..+..+|+|+.|.+++|..+. ++. + ..++|++|++..|.. ...+...+. .+++|+.|+|+. +.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHHhcCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 3344455666666666552221 222 1 256666666665553 233233443 456666666642 11
Q ss_pred ccCchHHH--hccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHH---HHHHhhCCCccEEEccCC
Q 003270 589 LTNLEPVF--ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAI---EELLAYCTHLTHVSLNGC 663 (835)
Q Consensus 589 ~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~~~~L~~L~l~~~ 663 (835)
+..+...+ ..+++|+.|.+.+|. +.+.....+.....+++|++|+++.|.+.+.+. ...+..+++|++|++++|
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11111222 235677777776666 555444444333456667777777776666332 222345666777777666
Q ss_pred C
Q 003270 664 G 664 (835)
Q Consensus 664 ~ 664 (835)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 3
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.61 E-value=4.8e-08 Score=91.13 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=80.4
Q ss_pred cccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhcc
Q 003270 498 STLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQ 577 (835)
Q Consensus 498 ~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 577 (835)
+.++++++.+ +.+|..+. ++|++|++++| .+.. ..+..+..+++|++|++++|..... ....|..++
T Consensus 15 ~~l~~~~n~l--------~~iP~~~~--~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRL--------ASVPAGIP--TDKQRLWLNNN-QITK-LEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCC--------SSCCSCCC--TTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred cEEEeCCCCC--------CccCCCcC--CCCcEEEeCCC-Cccc-cCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcc
Confidence 4556666666 66666553 78999999998 4543 3356678899999999999976543 244578899
Q ss_pred ccceeeecCccccCchH-HHhccccccEEecccccccc
Q 003270 578 NLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~ 614 (835)
+|++|+|++|+++++|. .|..+++|+.|++++|+ +.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~ 118 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WD 118 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BC
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-cc
Confidence 99999999999999887 48899999999999998 65
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.61 E-value=5.1e-08 Score=90.66 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=80.4
Q ss_pred cccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhcc
Q 003270 498 STLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQ 577 (835)
Q Consensus 498 ~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 577 (835)
+.++++++.+ ..+|..+ .++|++|++++| .++. ..+..+..+++|++|++++|..... .+..|..++
T Consensus 12 ~~l~~s~n~l--------~~ip~~~--~~~l~~L~L~~N-~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~ 78 (170)
T 3g39_A 12 TTVDCSGKSL--------ASVPTGI--PTTTQVLYLYDN-QITK-LEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLT 78 (170)
T ss_dssp TEEECTTSCC--------SSCCSCC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred CEEEeCCCCc--------CccCccC--CCCCcEEEcCCC-cCCc-cChhhhcCcccCCEEECCCCCcCcc-ChhhccCCC
Confidence 4566666666 5566554 378899999998 4543 2355678899999999999985543 355678999
Q ss_pred ccceeeecCccccCchH-HHhccccccEEecccccccc
Q 003270 578 NLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~ 614 (835)
+|++|+|++|++++++. .|..+++|++|++++|+ ++
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~ 115 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WD 115 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-BC
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC-CC
Confidence 99999999999999877 68899999999999998 65
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=5.9e-07 Score=84.60 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=28.6
Q ss_pred hhhHHHHHHhhCCcCcEEEcCCc-ccChh----hHHhhcCCCCCCEEEecCCCCC
Q 003270 111 IHLLVMKAVSLLRNLEALTLGRG-QLGDA----FFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 111 ~~~~~~~~l~~~~~L~~L~l~~~-~i~~~----~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
+...+...+...+.|++|++++| .+.+. +...+...++|++|++++|.+.
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 44445556666666666666666 66644 3334445556666666666554
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=9.1e-07 Score=94.49 Aligned_cols=129 Identities=10% Similarity=0.115 Sum_probs=68.7
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL 600 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~ 600 (835)
+..+.+|+.+.+..+ +.. .-...+.++..|+.+.+..+ +..++..++.++.+|+.+.+..+ +..++. .|.+|.
T Consensus 213 f~~~~~l~~i~~~~~--~~~-i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTT-LGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT--CCE-ECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred cccccccceeeeccc--eeE-EccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 344555555555442 111 11223445566666666543 33444456666666666666543 333333 566677
Q ss_pred cccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 601 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
+|+++.+.++. ++...... |.+|.+|+.+++..+ +.. .-..+|.+|++|+++.+..
T Consensus 287 ~L~~i~l~~~~-i~~I~~~a---F~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSA-IETLEPRV---FMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTT-CCEECTTT---TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccc-cceehhhh---hcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECC
Confidence 77777776544 44443332 356677777777543 211 1125567777777777754
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=2.9e-06 Score=90.53 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=74.1
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL 600 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~ 600 (835)
+..+..+..+.+.... . ......+..+.+|+.+.+... +..++..++..+..|+.+.+..+ ++.+.. .|.+|.
T Consensus 190 ~~~~~~~~~~~~~~~~--~-~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~ 263 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV--K-TVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT 263 (379)
T ss_dssp CCTTCCCSEEECCTTC--C-EECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccccccccccce--e-EEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceee
Confidence 3445555555554421 1 112233456667777777543 33444556777777777777654 444433 667777
Q ss_pred cccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 601 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
+|+.+.+..+ ++..... ++..|++|+.+.+.++.+.. .-...|.+|++|+++.+..
T Consensus 264 ~l~~i~l~~~--i~~i~~~---aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 264 ALKTLNFYAK--VKTVPYL---LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TCCEEEECCC--CSEECTT---TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCT
T ss_pred hhcccccccc--ceecccc---ccccccccccccccccccce-ehhhhhcCCCCCCEEEcCc
Confidence 7777777542 3433322 23667777777777665543 1235667777777777754
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=6.2e-07 Score=94.50 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=67.5
Q ss_pred ccccccc-eeEEEeecCCcccccccccCCCcceEeccc-CCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc
Q 003270 499 TLGIEAL-HMVVLELKGCGVLSDAYINCPLLTSLDASF-CSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 576 (835)
Q Consensus 499 ~l~l~~~-~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~-~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 576 (835)
.++.+++ .+ ..+|. +..+++|++|+|++ | .+.. ..+..+.++++|+.|+|++|...+ ..+..|.++
T Consensus 12 ~v~~~~~n~l--------~~ip~-l~~~~~L~~L~l~~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGAL--------DSLHH-LPGAENLTELYIENQQ-HLQH-LELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFT 79 (347)
T ss_dssp CEECCSSCCC--------TTTTT-SCSCSCCSEEECCSCS-SCCE-ECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSC
T ss_pred EEEcCCCCCC--------CccCC-CCCCCCeeEEEccCCC-CCCC-cChhHhccccCCCEEECCCCccce-eCHHHhcCC
Confidence 3455555 55 56777 77778888888875 5 4542 223456777788888888776443 335567777
Q ss_pred cccceeeecCccccCchHHHhccccccEEecccccccc
Q 003270 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 614 (835)
++|+.|+|++|+++++|........|+.|++.+|+ +.
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~-~~ 116 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP-LH 116 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC-CC
T ss_pred cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC-cc
Confidence 78888888888777776633322337777777777 54
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=3.1e-07 Score=96.80 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=67.8
Q ss_pred hhhHHHHHHhhCCcCcEEEcCC-cccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccC
Q 003270 111 IHLLVMKAVSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR 189 (835)
Q Consensus 111 ~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 189 (835)
+.. +|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|.+++..+..+.++++|++|+|++|.+..+...
T Consensus 21 l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 443 445 77778888888885 888877777888888888888888888777777778888888888888887765421
Q ss_pred ---CCCCcEEEecccchH
Q 003270 190 ---CPQLEHLSLKRSNMA 204 (835)
Q Consensus 190 ---l~~L~~L~l~~~~i~ 204 (835)
...|+.|++.+|.+.
T Consensus 99 ~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTCSCCCCEEECCSSCCC
T ss_pred HcccCCceEEEeeCCCcc
Confidence 122777777766653
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.02 E-value=6.1e-05 Score=70.04 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=86.0
Q ss_pred hhhhhhcCCCccEEeccCCCCcCchhh----HhhhhccccceeeecCccccC-----chHHHhccccccEEecccccccc
Q 003270 544 LSATTTSCPLIESLILMSCQSIGPDGL----YSLRSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 544 ~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~ 614 (835)
+...+..-+.|++|+++++..+++.|. +++..-+.|+.|+|++|.+.+ +...+..-..|++|+|++|. |+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence 444455566677777776544555543 344556788888888888873 56677778889999999988 88
Q ss_pred hhhHHHHHh-cCCCCCccEEeCCCc---ccchH---HHHHHHhhCCCccEEEccCCC
Q 003270 615 NTSLESLYK-KGSLPALQELDLSYG---TLCQS---AIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 615 ~~~~~~l~~-~~~~~~L~~L~l~~n---~~~~~---~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+.+...+.. +..-..|++|++++| .+.+. .+.+.+..-+.|++|+++.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 888777754 556677999999865 55543 366777888889999987653
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=4.3e-05 Score=75.43 Aligned_cols=83 Identities=27% Similarity=0.355 Sum_probs=55.5
Q ss_pred hhccccceeeecCccccCch---HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch------HH
Q 003270 574 RSLQNLTMLDLSYTFLTNLE---PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ------SA 644 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~------~~ 644 (835)
.++++|++|+|++|.+++++ ..+..+++|+.|+|++|. +++. ..+..+..+ .|++|++++|.+++ ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc--hhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence 45677777777777777643 456677888888888877 6654 222223444 78888888887764 23
Q ss_pred HHHHHhhCCCccEEEc
Q 003270 645 IEELLAYCTHLTHVSL 660 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l 660 (835)
....+..+++|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 3456778888888763
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=3.3e-05 Score=76.24 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=23.0
Q ss_pred cCCCCCCEEEecCCCCCc--ccccccccCCcccEEeccCcccc
Q 003270 144 ADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVM 184 (835)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~ 184 (835)
..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 356677777777777655 34444444555555555554443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=0.00088 Score=62.23 Aligned_cols=47 Identities=4% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHhhCCcCcEEEcCCc-ccChh----hHHhhcCCCCCCEEEecCCCCC
Q 003270 114 LVMKAVSLLRNLEALTLGRG-QLGDA----FFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 114 ~~~~~l~~~~~L~~L~l~~~-~i~~~----~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
.+...+..-+.|+.|+++++ .|.+. +.+++..-+.|+.|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34444445555666666553 55543 3344444455555555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.81 E-value=0.0041 Score=53.88 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=46.7
Q ss_pred chh--hhhhcCC-ccceeecccCcCChhHH-HHHHhcCCCcceeecccccCCCchHHHHHHH
Q 003270 763 SLE--TLKLDCP-KLTSLFLQSCNIDEEGV-ESAITQCGMLETLDVRFCPKICSTSMGRLRA 820 (835)
Q Consensus 763 ~l~--~l~~~~~-~L~~L~l~~~~i~~~~l-~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~ 820 (835)
.|+ .+|..+| +|+.|+|++|.|+ .+ +..|..+++|+.|+|.+||+.+++.+..+..
T Consensus 19 ~L~~~~vP~~lp~~l~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~ 78 (130)
T 3rfe_A 19 GLTWASLPTAFPVDTTELVLTGNNLT--ALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA 78 (130)
T ss_dssp CCCTTTSCSCCCTTCSEEECTTSCCS--SCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHH
T ss_pred CCccccCCCCCCcCCCEEECCCCcCC--ccChhhhhhccccCEEEecCCCeeccCccHHHHH
Confidence 466 7887775 7999999999985 44 4567899999999999999999998877765
No 164
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=90.24 E-value=0.11 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=23.1
Q ss_pred HHhhhccccchhhhHHHHHHHHhhcCCCCceeec
Q 003270 46 KQKIWKSGWILQMTYCIWQWRAASAHEDFWRCLN 79 (835)
Q Consensus 46 ~~~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~ 79 (835)
++..+.......++.|||+|+.+..++..|+.++
T Consensus 20 I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 20 IFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp HHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 4444455556677889999999999999998764
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.60 E-value=0.37 Score=41.35 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=23.9
Q ss_pred EEEcCCcccC-hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcc
Q 003270 127 ALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 182 (835)
Q Consensus 127 ~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 182 (835)
.++.+++.++ ..+|..+ .++|++|+|++|.++..-+..+..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4445555444 2233222 1245566666665544333334444444444444443
No 166
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=36.91 E-value=4.9 Score=39.36 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=31.0
Q ss_pred HHHHHHhhhccccchhhhHHHHHHHHhhcCCCCceeeccCC
Q 003270 42 MVLQKQKIWKSGWILQMTYCIWQWRAASAHEDFWRCLNFEN 82 (835)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~~~~ 82 (835)
..+.++..+.+......+.|||+|+.+..++.+|+.+-..+
T Consensus 12 i~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd 52 (312)
T 3l2o_B 12 VQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD 52 (312)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence 34455566666667788899999999999999998765543
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.25 E-value=17 Score=29.11 Aligned_cols=14 Identities=0% Similarity=0.166 Sum_probs=7.5
Q ss_pred cccCCCcceEeccc
Q 003270 522 YINCPLLTSLDASF 535 (835)
Q Consensus 522 ~~~~~~L~~L~ls~ 535 (835)
|.+|.+|+++.|..
T Consensus 16 F~~c~~L~~i~iP~ 29 (100)
T 2lz0_A 16 FAGNTVIREITVQP 29 (100)
T ss_dssp TTTCTTCCCEEECT
T ss_pred hcCCCCCcEEEcCC
Confidence 45555555555554
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.00 E-value=32 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=23.4
Q ss_pred hCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCC
Q 003270 391 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 431 (835)
Q Consensus 391 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 431 (835)
+|.+|+++.|.. .++..+..+| .+|.+|+.+.+.+-
T Consensus 18 ~c~~L~~i~iP~--~v~~Ig~~aF---~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 18 GNTVIREITVQP--NIGLLYDGMF---SGCTALEKLILTGE 53 (100)
T ss_dssp TCTTCCCEEECT--TSSCCCTTSS---TTCTTCCCEEECCS
T ss_pred CCCCCcEEEcCC--chheEcHHHH---hccCCccEEEEcCC
Confidence 355666666655 5565555666 67778888777653
No 169
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=20.33 E-value=4.6e+02 Score=23.78 Aligned_cols=10 Identities=10% Similarity=0.497 Sum_probs=4.5
Q ss_pred ccEEEecCCC
Q 003270 423 LKSLVLDNCE 432 (835)
Q Consensus 423 L~~L~l~~~~ 432 (835)
++...+.+|.
T Consensus 92 l~~~~f~~~~ 101 (214)
T 2w7z_A 92 FHRVTFLRCN 101 (214)
T ss_dssp EEEEEEESCB
T ss_pred EEeeEEeCCe
Confidence 4444444443
Done!