BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003271
(835 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 22/295 (7%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 165
Query: 668 WSIN-------NGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 720
W+ N G + V+ + F P I +A+ + + + + Q+ + L G
Sbjct: 166 WNRNGQLLQTLTGHSSSVWG-----VAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTG 219
Query: 721 HKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779
H + V V ++ G+ +AS SD+ V++W+ G+ + L+ + + F P
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 780 SLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
++ +T++LWN TL+ H V +A S +ASAS DK VK+W
Sbjct: 276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 141/295 (47%), Gaps = 22/295 (7%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSP 354
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 355 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKL 411
Query: 668 WSIN-------NGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 720
W+ N G + V+ + F P I +A+ + + + + Q+ + L G
Sbjct: 412 WNRNGQLLQTLTGHSSSVWG-----VAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTG 465
Query: 721 HKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779
H + V V ++ G+ +AS SD+ V++W+ G+ + L+ + F P
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQ 521
Query: 780 SLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
++ +T++LWN TL+ H V +A S +ASAS DK VK+W
Sbjct: 522 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 142/296 (47%), Gaps = 22/296 (7%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A +S V FSPDG+ +A+ DK LW ++ TL H+ + V FS
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFS 66
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P +A++S D+TV++W+ L+T TGHS++V + F P + + + D+ + ++
Sbjct: 67 PDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VK 123
Query: 667 YWSIN-------NGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 719
W+ N G + V+ + F P I +A+ + + + + Q+ + L
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWG-----VAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLT 177
Query: 720 GHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778
GH + V V ++ G+ +AS SD+ V++W+ G+ + L+ + F P
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 779 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
++ +T++LWN TL+ H V+ +A +ASAS DK VK+W
Sbjct: 234 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 14/291 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V F PDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 313
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
+A++S D+TV++W+ N + L+T TGHS++V + F P + + + D+ + ++
Sbjct: 314 DGQTIASASDDKTVKLWN-RNGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 370
Query: 668 WSINNGSCAGVFKSGATQMR---FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 724
W+ NG ++ +R F P I +A+ + + + + Q+ + L GH +
Sbjct: 371 WN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSS 428
Query: 725 VHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783
V V ++ + +AS SD+ V++W+ G+ + L+ + F P ++
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 484
Query: 784 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
+T++LWN TL+ H V +A S +ASAS DK VK+W
Sbjct: 485 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
Q + +S V FSPDG+ +A+ DK LW ++ TL H+ + V FSP
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSP 559
Query: 608 SLSRLATSSADRTVRVWD 625
+A++S+D+TV++W+
Sbjct: 560 DGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 30/298 (10%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
F P ++ + D +W E+ + TL+ HT + D+ F S LA+ SAD T++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
+WD + + +RT GH V S+ P+ D + S + I+ W + G C F
Sbjct: 176 LWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Query: 683 ATQMRF-QPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY--- 736
+R +P L A+ N + + V T+ C+ +L+ H++ V + W Y
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 293
Query: 737 ------------------LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778
L+ D+ +++W + S G C+ L N +FH
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 779 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
+L +TL +W+ + + TL+AH+ V+SL V + S D+ VK+W+
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 123/269 (45%), Gaps = 31/269 (11%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V+ F GKLLA+ D LW + F T+ H ++ V P+
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWS 669
+ ++S D+T+++W+ + Y ++TFTGH V + P+++ L+ SC N+ +R W
Sbjct: 206 HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRVWV 262
Query: 670 INNGSCAGVFK---------SGATQMRFQ----------PRLGR----ILAAAIENYISI 706
+ C + S A + + + G+ +L+ + + I +
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCT 765
DV T +C + L GH N V V +++ G+++ S +D+ +RVW + C+ L+
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN---KRCMKTLNAH 379
Query: 766 GNKFHSCVFHPTFPSLLVIGCYETLELWN 794
+ S FH T P ++ +T+++W
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 114/270 (42%), Gaps = 30/270 (11%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
K L H +T V F P S + ++S D T++VWD E D+ RT GH+ +V + F
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFD 159
Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISI 706
S + LL SC + I+ W C + + P I++A+ + I +
Sbjct: 160 HSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218
Query: 707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 765
+V+T C GH+ V V N G +AS S D+ VRVW + + EC EL
Sbjct: 219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAELREH 275
Query: 766 GNKFHSCVFHPTF--------------------PSLLVIGCYETLELWNMTENKTL-TLS 804
+ + P P LL +T+++W+++ L TL
Sbjct: 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335
Query: 805 AHDKLVSSLAASTVNGMVASASHDKCVKIW 834
HD V + + + S + DK +++W
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 92
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 93 VAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 208
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 209 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 268
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 269 TGGKWIVSGSEDNLVYIW 286
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 265
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 266 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 305
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 306 STACHPTENIIASAALENDKTIKLW 330
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 77 VAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 192
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 250 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 290 STACHPTENIIASAALENDKTIKLW 314
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 127/257 (49%), Gaps = 14/257 (5%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646
+ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH + +
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDV 95
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIENY 703
+ S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 96 AWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 762
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+ L
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL 211
Query: 763 SCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN 819
N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 271
Query: 820 G--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 272 GGKWIVSGSEDNLVYIW 288
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 225 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 280
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 267
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 268 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 307
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 308 STACHPTENIIASAALENDKTIKLW 332
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 75
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 76 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 191
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 251
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 252 TGGKWIVSGSEDNLVYIW 269
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 88 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 206 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 261
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 248
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 249 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 288
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 289 STACHPTENIIASAALENDKTIKLW 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 77 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 192
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 250 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 290 STACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 76
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 77 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 192
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 252
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 253 TGGKWIVSGSEDNLVYIW 270
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 89 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 249
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 250 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 290 STACHPTENIIASAALENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 87
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 88 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 203
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 263
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 264 TGGKWIVSGSEDNLVYIW 281
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 100 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 157
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 218 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 273
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 260
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 261 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 300
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 301 STACHPTENIIASAALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 71
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 72 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 187
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 247
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 248 TGGKWIVSGSEDNLVYIW 265
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 84 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 202 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 257
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 244
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 245 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 284
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 285 STACHPTENIIASAALENDKTIKLW 309
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 69
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 70 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 185
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 245
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 246 TGGKWIVSGSEDNLVYIW 263
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 82 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 200 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 255
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 242
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 243 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 282
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 283 STACHPTENIIASAALENDKTIKLW 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 186
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 247 TGGKWIVSGSEDNLVYIW 264
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 244 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 283
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 284 STACHPTENIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 66
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 67 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 182
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 242
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 243 TGGKWIVSGSEDNLVYIW 260
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 252
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 239
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 240 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 279
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 280 STACHPTENIIASAALENDKTIKLW 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ +K TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 70
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 71 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 186
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 247 TGGKWIVSGSEDNLVYIW 264
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 83 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ L +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 243
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 244 -FSVTGGK-------------------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 283
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 284 STACHPTENIIASAALENDKTIKLW 308
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 19/316 (6%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---TQMRFQPRLGRILAAAIENYISILD 708
+ +L+ S + +R W + G C + + + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 709 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 766
+ C L N V V ++ +G+Y LA+ D +++W SKG+C+ +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 767 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 821
N+ + C+ F T +V G + L +WN+ T+ L H +V S A +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 822 VASAS--HDKCVKIWK 835
+ASA+ +DK +K+WK
Sbjct: 297 IASAALENDKTIKLWK 312
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 74 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T +C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 189
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L TL+LW+ ++ K L T + H ++ A +V
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 250 TGGKWIVSGSEDNMVYIW 267
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 204 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ + +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D T+++WD L+T+TGH K + C N
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 247 -FSVTGGK-------------------WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 287 STACHPTENIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 19/316 (6%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---TQMRFQPRLGRILAAAIENYISILD 708
+ +L+ S + +R W + G C + + + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 709 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 766
+ C L N V V ++ +G+Y LA+ D +++W SKG+C+ +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 767 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 821
N+ + C+ F T +V G + L +WN+ T+ L H +V S A +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 822 VASAS--HDKCVKIWK 835
+ASA+ +DK +K++K
Sbjct: 297 IASAALENDKTIKLYK 312
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 19/316 (6%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
++GR +E K +F L T V S FSP+G+ LA+ DK +W +
Sbjct: 4 QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T+ H I+DV +S + L ++S D+T+++WD + L+T GHS V +F+P
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---TQMRFQPRLGRILAAAIENYISILD 708
+ +L+ S + +R W + G C + + + + F I++++ + I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 709 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 766
+ C L N V V ++ +G+Y LA+ D +++W SKG+C+ +
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 767 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 821
N+ + C+ F T +V G + L +WN+ T+ L H +V S A +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 822 VASAS--HDKCVKIWK 835
+ASA+ +DK +K++K
Sbjct: 297 IASAALENDKTIKLFK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 14/258 (5%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645
++ + TL HT+ ++ V+FSP+ LA+SSAD+ +++W + + +T +GH +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD 73
Query: 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN 702
+ + S +LL S ++ ++ W +++G C K + + F P+ I++ + +
Sbjct: 74 VAW-SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761
+ I DV+T +C L H + V +V +N G + S S D L R+W S G+C+
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKT 189
Query: 762 LSCTGNKFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTV 818
L N S V F P +L L+LW+ ++ K L T + H ++ A +V
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 249
Query: 819 NG--MVASASHDKCVKIW 834
G + S S D V IW
Sbjct: 250 TGGKWIVSGSEDNMVYIW 267
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S FSP+G+ LA+ DK +W + T+ H I+DV +S + L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
+S D+T+++WD + L+T GHS V +F+P + +L+ S + +R W + G
Sbjct: 86 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
C + + + + F I++++ + I D + C L N V V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
+ +G+Y LA+ D +++W SKG+C+ + N+ + C+ F T +V G
Sbjct: 204 SPNGKYILAATLDNDLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
+ + +WN+ T+ L H +V S A ++ASA+ +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 92/205 (44%), Gaps = 42/205 (20%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFS 606
+ +PA + V + HF+ DG L+ + +D +W T S +K+ +++ ++ V+FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
P+ + ++ D +++WD L+T+TGH K + C N
Sbjct: 205 PNGKYILAATLDNDLKLWDYSKGK-CLKTYTGH------------KNEKYCIFAN----- 246
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
+S+ G I++ + +N + I +++T+ KLQGH + V
Sbjct: 247 -FSVTGGK-------------------WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 727 SVCWNTSGEYLASVS---DELVRVW 748
S + + +AS + D+ +++W
Sbjct: 287 STACHPTENIIASAALENDKTIKLW 311
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 144/314 (45%), Gaps = 46/314 (14%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 619
++P G LLA+ G D++ +W TE S+ KS L E H + + V +SP + LA++S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 620 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SC 675
T +W D+ + T GH V S+ + PS +LL +C + + W ++ C
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 676 AGVFKSGATQMR---FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCW 730
V S ++ + P + +A+ ++ + + E VC L+GH++ V S+ +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 731 NTSGEYLASVSDE-LVRVW------------SIGSGSKGECIHELSCTGNKFHS-CVFHP 776
+ SG+ LAS SD+ VR+W GS +CI CT + FHS ++
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHSRTIYDI 258
Query: 777 TFPSL---LVIGCY-ETLELWNMTENK-----TLTLSAHDKLVSSLAASTVN------GM 821
+ L L C + + ++ N T +L+AH S + V G+
Sbjct: 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318
Query: 822 VASASHDKCVKIWK 835
+AS S D V WK
Sbjct: 319 LASCSDDGEVAFWK 332
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRL 612
++V+S ++P G LLAT DK +W + + S L HTQ + V + PS L
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
Query: 613 ATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
A++S D TV+++ E D+ T GH +TV SL F PS + L SC ++ +R W
Sbjct: 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCSDDRTVRIW 221
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F 587
RD+ EV + + ++ + T V+ + P +LLA+ +D L+ E +
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
+TLE H + + F PS RLA+ S DRTVR+W
Sbjct: 185 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 24/137 (17%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW------------CT---ESFTVKSTLEE-HTQW 599
S V S F P G+ LA+ D+ +W C+ S+ TL H++
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254
Query: 600 ITDVRFSPSLSRLATSSADRTVRVW------DTENPDYSL--RTFTGHSTTVMSLDFHPS 651
I D+ + LAT+ D +RV+ D + P +SL HS V + ++P
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK 314
Query: 652 KEDLLCSCDNNSEIRYW 668
+ LL SC ++ E+ +W
Sbjct: 315 EPGLLASCSDDGEVAFW 331
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVW 624
G + +G D +W + TL HT W + +R + +S S DRT++VW
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS----GSTDRTLKVW 184
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
+ E + + T GH++TV + H E + S ++ +R W I G C V
Sbjct: 185 NAETGE-CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 685 QMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 742
+R GR +++ A + + + D ET+ C LQGH N+V+S+ G ++ S S D
Sbjct: 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLD 298
Query: 743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 801
+RVW + +G+ CIH L TG++ + L+ T+++W++ + L
Sbjct: 299 TSIRVWDVETGN---CIHTL--TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 353
Query: 802 TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 834
TL +K S++ N V ++S D VK+W
Sbjct: 354 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D ++RVWD
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWD 305
Query: 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------ 679
E + + T TGH + ++ K+++L S + +S ++ W I G C
Sbjct: 306 VETGN-CIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 680 KSGATQMRFQPRLGRILAAAIENYISILDVET 711
+S T ++F ++ ++ + + + D++T
Sbjct: 362 QSAVTCLQFNKNF--VITSSDDGTVKLWDLKT 391
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 71/311 (22%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + + PS +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
L + S DRTVR+WD LR TG + +S++
Sbjct: 180 LVSGSGDRTVRIWD-------LR--TGQCSLTLSIE------------------------ 206
Query: 672 NGSCAGVFKSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ-------GHKN 723
G T + P G+ +AA +++ + + D ET +L GHK+
Sbjct: 207 ---------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257
Query: 724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------GECIHELSCTGNK-FHSC 772
V+SV + G+ + S S D V++W++ + + G C E++ G+K F
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC--EVTYIGHKDFVLS 315
Query: 773 VFHPTFPSLLVIGCYET-LELWN-MTENKTLTLSAHDKLVSSLAASTVNGM------VAS 824
V ++ G + + W+ + N L L H V S+A + + + A+
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375
Query: 825 ASHDKCVKIWK 835
S D +IWK
Sbjct: 376 GSGDCKARIWK 386
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 43/239 (17%)
Query: 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR-- 687
D L H++ V + F E L C+ +++ + +++GS + +
Sbjct: 54 DVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQV--YRVSDGSLVARLSDDSAANKDP 111
Query: 688 -------------------FQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHS 727
F P G+ LA E+ I I D+E + + LQGH+ ++S
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 728 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786
+ + SG+ L S S D VR+W + + G+C LS + + P + G
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSIE-DGVTTVAVSPGDGKYIAAGS 226
Query: 787 YE-TLELWNM----------TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
+ + +W+ +EN++ T H V S+ + V S S D+ VK+W
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 20/144 (13%)
Query: 707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG 766
+DVE K H + V V ++ GEYLA+ ++ +V+ + GS + + S
Sbjct: 53 IDVELH----KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN 108
Query: 767 NK---------------FHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLV 810
S F P L + +W++ K + L H++ +
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 811 SSLAASTVNGMVASASHDKCVKIW 834
SL + S S D+ V+IW
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIW 192
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 5/184 (2%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FSPD + LATG H K ++ ES + +L+ ++I + +SP LA+ + D +
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
++D L T GH+ + SL F P + LL + ++ I+ + + + + AG
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 683 AT---QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 739
A+ + F P ++++ + + + DV T+ C H++QV V +N +G + S
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307
Query: 740 VSDE 743
V D+
Sbjct: 308 VGDD 311
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 5/154 (3%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S +SPDGK LA+G D ++ + + TLE H I + FSP L T+S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
D ++++D ++ + + T +GH++ V+++ F P + S ++ ++ W + +C
Sbjct: 227 DGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRTCVH 284
Query: 678 VFKSGATQ---MRFQPRLGRILAAAIENYISILD 708
F Q +++ +I++ + I I D
Sbjct: 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637
K W E ++ +LE H + V S +L A+SS D +R+WD EN +++
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK-QIKSID 119
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVFKSGATQMRFQPR 691
+L F P + L + + ++ + + +G G F + + P
Sbjct: 120 AGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKF---ILSIAYSPD 175
Query: 692 LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSI 750
+ + AI+ I+I D+ T L+GH + S+ ++ + L + SD+ ++++ +
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 10/229 (4%)
Query: 612 LATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
+ T S D V+VW + L+ + GH V+S+D + + S ++ IR W +
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDL 109
Query: 671 NNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 727
NG +G A + F P + ++I VE+ L + S
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169
Query: 728 VCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786
+ ++ G+YLAS D ++ ++ I +G + +H L S F P L+
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 787 YETLELWNMTE-NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
++++++ N TLS H V ++A + S+S DK VK+W
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 18/233 (7%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + +KV S S D LL+ G + + C+ + LE H+ +++DV S + +
Sbjct: 25 PETATKVVST--SRDKTLLSWGPNPDRHSSECSYGLPDRR-LEGHSAFVSDVALSNNGNF 81
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
++S D ++R+W+ +N + F GH+ V+S+ F P ++ +N+ +R W++
Sbjct: 82 AVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVSGGRDNA-LRVWNV- 138
Query: 672 NGSCAGVFKSGA-----TQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQGHKNQ 724
G C GA + +RF P L I++ +N + + D+ T L+GH N
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY 198
Query: 725 VHSVCWNTSGEYLASV-SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776
V SV + G AS D + R+W + +KGE + E++ G + F P
Sbjct: 199 VTSVTVSPDGSLCASSDKDGVARLWDL---TKGEALSEMA-AGAPINQICFSP 247
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 85/246 (34%), Gaps = 54/246 (21%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S +G + D LW ++ + HT+ + V FSP ++ +
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE------------------------ 653
D +RVW+ + + H+ V + F PS +
Sbjct: 130 DNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Query: 654 -------------------DLLCSCDNNSEIRYWSINNGSCAGVFKSGA--TQMRFQPRL 692
L S D + R W + G +GA Q+ F P
Sbjct: 190 TDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNR 249
Query: 693 GRILAAAIENYISILDVETQVCRLKL----QGHKNQVH---SVCWNTSGEYLAS-VSDEL 744
+ AA E I I D+E + ++L QG K V S+ W+ G L S +D +
Sbjct: 250 -YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNV 308
Query: 745 VRVWSI 750
+RVW +
Sbjct: 309 IRVWGV 314
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
GS D V + + AD + F +I ++V+ +S DG LA
Sbjct: 76 GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
T DK +W T E + S L+EH+Q + V + PS + LA+SS D TVR+W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
+ D+ + GH TV S DF ++ LCS ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 45/242 (18%)
Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDN 661
F S LAT S DR +++ + D++L T H + S+ + P LL +
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF 78
Query: 662 NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 721
+S + W+ K + F+ L I+ +GH
Sbjct: 79 DSTVSIWA----------KEESADRTFEMDLLAII----------------------EGH 106
Query: 722 KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFP 779
+N+V V W+ G YLA+ S D+ V +W SG + ECI L ++HP+
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-E 165
Query: 780 SLLVIGCY-ETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGM--VASASHDKCVKI 833
+LL Y +T+ +W ++ L+ H+ V S G+ + S S D V++
Sbjct: 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 834 WK 835
WK
Sbjct: 226 WK 227
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 22/218 (10%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 186 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNGSCAGVFKSG--ATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 718
+N G G + F P + AA +E I + +++ +V
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302
Query: 719 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 755
+ Q S+ W+ G+ L A +D LVRVW + G++
Sbjct: 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 122/303 (40%), Gaps = 51/303 (16%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 51 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 109 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 165
Query: 680 K-----SGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCW 730
+ + +RF P I++ + + + ++ C+LK GH +++V
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTV 223
Query: 731 NTSGEYLAS-VSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLV 783
+ G AS D +W + G G+ I+ L + N++ C T PS
Sbjct: 224 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGPS--- 278
Query: 784 IGCYETLELWNMTENKTLTLSAHDKLVS-----------SLAASTVNGMVASASHDKCVK 832
+++W++ E K + +++S SLA S + + D V+
Sbjct: 279 ------IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 833 IWK 835
+W+
Sbjct: 332 VWQ 334
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY----LASVSDELVRVWSIGSGSKGEC 758
Y + E R L+GH V + T+ ++ L++ D+ + +W +
Sbjct: 19 YFQSMMTEQMTLRGTLKGHNGWVTQIA--TTPQFPDMILSASRDKTIIMWKLTRDETNYG 76
Query: 759 IHELSCTGNK-FHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLT-LSAHDKLVSSLAA 815
I + + G+ F S V + + G ++ TL LW++T T H K V S+A
Sbjct: 77 IPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 816 STVNGMVASASHDKCVKIW 834
S+ N + S S DK +K+W
Sbjct: 137 SSDNRQIVSGSRDKTIKLW 155
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 22/218 (10%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
T V S FS D + + +G DK LW T +TV+ E H++W++ VRFSP+ S
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+ + D+ V+VW+ N L+T GH+ + ++ P L S + + W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNGSCAGVFKSG--ATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 718
+N G G + F P + AA +E I + +++ +V
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 719 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 755
+ Q S+ W+ G+ L A +D LVRVW + G++
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 122/303 (40%), Gaps = 51/303 (16%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
PD ++ + DK ++W T + L H+ +++DV S + S D
Sbjct: 28 PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T+R+WD + R F GH+ V+S+ F ++ S + I+ W+ G C
Sbjct: 86 TLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 142
Query: 680 K-----SGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCW 730
+ + +RF P I++ + + + ++ C+LK GH +++V
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTV 200
Query: 731 NTSGEYLAS-VSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLV 783
+ G AS D +W + G G+ I+ L + N++ C T PS
Sbjct: 201 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGPS--- 255
Query: 784 IGCYETLELWNMTENKTLTLSAHDKLVS-----------SLAASTVNGMVASASHDKCVK 832
+++W++ E K + +++S SLA S + + D V+
Sbjct: 256 ------IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 833 IWK 835
+W+
Sbjct: 309 VWQ 311
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 710 ETQVCRLKLQGHKNQVHSVCWNTSGEY----LASVSDELVRVWSIGSGSKGECIHELSCT 765
E R L+GH V + T+ ++ L++ D+ + +W + I + +
Sbjct: 3 EQMTLRGTLKGHNGWVTQIA--TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60
Query: 766 GNK-FHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMV 822
G+ F S V + + G ++ TL LW++T T H K V S+A S+ N +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 823 ASASHDKCVKIW 834
S S DK +K+W
Sbjct: 121 VSGSRDKTIKLW 132
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
D +++ TG D +W + + +TL H + + +RF+ + + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 626 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----- 678
+P D +L R GH V +DF + + S + I+ W N +C V
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 679 FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738
K G ++++ RL +++ + +N I + D+E C L+GH+ V + ++ ++
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVS 351
Query: 739 SVSDELVRVWSI 750
D ++VW +
Sbjct: 352 GAYDGKIKVWDL 363
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 753
+I++ +N I I D T C+ L GH V + ++ S SD VRVW + +
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-SDSTVRVWDVNT- 202
Query: 754 SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKL 809
GE ++ L H C V H F + +++ C + ++ +W+M +TL L
Sbjct: 203 --GEMLNTL------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL--RRVL 252
Query: 810 VSSLAASTV----NGMVASASHDKCVKIW 834
V AA V + + SAS D+ +K+W
Sbjct: 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 50/283 (17%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
LT + FV D +L +N + S D+ R ++ G T+ F S+V S
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
FSPD + + + G +++ LW C S K E H+ W++ VR+SP +
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
A+ D ++VW+T ++ +R TF H + V L P+ + + + + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINNGSCAG-VFKSGAT--QMRFQPRLGRILAAAIENYISILDVETQ----VCRL- 716
+ W I N + F +G+T Q+ F P+L + +A + + I ++ TQ VC +
Sbjct: 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKL-QWVAVGTDQGVKIFNLMTQSKAPVCTIE 295
Query: 717 -----KLQGHKN---QVHSVCWNTSGEYL-ASVSDELVRVWSI 750
K +G K Q S+ WN G+ L A +D ++R +S
Sbjct: 296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 34/212 (16%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
D +L +G DK ++W F + L H +++D+ S +SS D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--- 675
+T+R+WD + + F GH + V S+ F P +L S EI+ W+I G C
Sbjct: 98 KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI-LGECKFS 154
Query: 676 ----------------AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 719
+ + KS F P + + + + + Q+ R +
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV---GWDGRLKVWNTNFQI-RYTFK 210
Query: 720 GHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 750
H++ V+ + + +G+Y+A+ D+ + +W I
Sbjct: 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 106/273 (38%), Gaps = 74/273 (27%)
Query: 590 KSTLEEHTQWITDVR--FSPSLSR----LATSSADRTVRVW----DTENPDYSL--RTFT 637
+ LE H+ W+T + FS + L + S D+TV +W + +N + + + T
Sbjct: 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILA 697
GH+ V DL S +N C + S +R
Sbjct: 74 GHNHFV---------SDLALSQEN-------------CFAISSSWDKTLR---------- 101
Query: 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKG 756
+ D+ T + GH+++V+SV ++ + L++ ++ +++W+I G
Sbjct: 102 --------LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI----LG 149
Query: 757 ECIHELSCTGNKFHS----CV-----------FHPTFPSLLVIGCYETLELWNMTENKTL 801
EC + S + HS CV P P +G L++WN
Sbjct: 150 EC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY 207
Query: 802 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
T AH+ V+ L+ S +A+ DK + IW
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 119/281 (42%), Gaps = 30/281 (10%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D + +AT DKK +W + + + T +
Sbjct: 643 KTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD 702
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ S LAT S+D +++WD N T GH+ +V F P
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPD- 760
Query: 653 EDLLCSCDNNSEIRYW---------SINNGSCAGVFKSGATQMRFQPRL-------GRIL 696
+ LL SC + ++ W SIN + M + RI+
Sbjct: 761 DKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM 820
Query: 697 AAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASV--SDELVRVWSIGSG 753
AA +N I + D+ T ++ GH + + C + +LA V S V +W+ S
Sbjct: 821 VAA-KNKIFLFDIHTSGLLGEIHTGHHSTIQ-YCDFSPQNHLAVVALSQYCVELWNTDSR 878
Query: 754 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793
SK +C LS H +F P S L +T+ LW
Sbjct: 879 SKVADCRGHLSWV----HGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 120/292 (41%), Gaps = 33/292 (11%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW T+S + + H W+ V FSP S TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 616 SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D+T+R+W+T +N L+ F + V+++D H + L+ +I
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVD-HIRRLQLING--RTGQID 963
Query: 667 YWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILD-VETQVCRLKLQGHKNQV 725
Y + SC + P L I I IL+ V ++ + + Q HK V
Sbjct: 964 YLTEAQVSCCCL----------SPHLQYIAFGDENGAIEILELVNNRIFQSRFQ-HKKTV 1012
Query: 726 HSVCWNTSGEYLASVSDEL-VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784
+ + + L S SD+ ++VW + +CI G++ F S L+
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVW---NWQLDKCIF---LRGHQETVKDFRLLKNSRLLS 1066
Query: 785 GCYE-TLELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
++ T+++WN +T NK H V S S +S S DK KIW
Sbjct: 1067 WSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 33/230 (14%)
Query: 555 TSKVESCHF--SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
+ +V CHF S LLATG D LW ++T+ HT + RFSP L
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLL 764
Query: 613 ATSSADRTVRVWDT----ENPDYSLRTFTGHSTTVMSLDFHPSKEDL-----LCSCDNN- 662
A+ SAD T+++WD E +++ F L+ +ED+ CS +
Sbjct: 765 ASCSADGTLKLWDATSANERKSINVKQFF--------LNLEDPQEDMEVIVKCCSWSADG 816
Query: 663 --------SEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRILAAAIENYISILDVE 710
++I + I+ G +G F P+ + A + + + + +
Sbjct: 817 ARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTD 876
Query: 711 TQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECI 759
++ +GH + VH V ++ G +L S D+ +R+W K +
Sbjct: 877 SRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAV 926
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 122/305 (40%), Gaps = 28/305 (9%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P + + +C FS DG+ +A+ G DK ++ E+ ++ H + FS
Sbjct: 619 PHTDAVYHAC-FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSI 670
+AT S D+ V++W++ + + T+ HS V F S LL + ++ ++ W +
Sbjct: 678 IATCSVDKKVKIWNSMTGEL-VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 671 NNGSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILD---------VETQVCRLKL 718
N C + RF P + + + + + + D + + L L
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNL 796
Query: 719 QGHKNQVHSVC----WNTSGEYLASVSDELVRVWSI-GSGSKGECIHELSCTGNK--FHS 771
+ + + + W+ G + + + ++ I SG GE IH TG+
Sbjct: 797 EDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGE-IH----TGHHSTIQY 851
Query: 772 CVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
C F P +V +ELWN + +K H V + S ++S D+
Sbjct: 852 CDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQT 911
Query: 831 VKIWK 835
+++W+
Sbjct: 912 IRLWE 916
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 10/137 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V SC S D ++ DK A +W + L H + FS + LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 618 DRTVRVWDTENPD-------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
+ +R+W+ N + S H V L F P + L+ + I++W++
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA---GGYIKWWNV 1210
Query: 671 NNGSCAGVFKSGATQMR 687
G + F + T ++
Sbjct: 1211 VTGESSQTFYTNGTNLK 1227
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 23/254 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
L D + R+ S++ GK FT + + + V +C ++P G +A GG D
Sbjct: 68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
K ++ E+ K ++ HT +++ F+ S ++ T+S D T +WD E+
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVF---KSGAT 684
L++F GH V+ LD PS+ + CD + + W + +G C F +S
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 685 QMRFQPRLGRILAAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYL-ASVS 741
+R+ P + + + + D+ + +V + SV ++ SG L A +
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 742 DELVRVWSIGSGSK 755
D + VW + GS+
Sbjct: 305 DYTINVWDVLKGSR 318
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
FS G+LL G +D +W + S L H ++ +R SP + + S D T+R
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 623 VW 624
VW
Sbjct: 352 VW 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 39/307 (12%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ 712
E LL SC + +R W + + + R + R ++ E+ ++V +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN-----------ERKSINVKRFFLSS-EDPPEDVEVIVK 809
Query: 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK--FH 770
C W+ G+ + + V ++ I + IH TG+
Sbjct: 810 CCS--------------WSADGDKIIVAAKNKVLLFDIHTSGLLAEIH----TGHHSTIQ 851
Query: 771 SCVFHPTFPSLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828
C F P + L VI + +ELWN+ + K H V + S +AS D
Sbjct: 852 YCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 910
Query: 829 KCVKIWK 835
+ +++W+
Sbjct: 911 QTIRVWE 917
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 27/260 (10%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ LLATG +D
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 729
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636
LW ++T+ HT + RFSP LA+ SAD T+R+WD + + R
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE--RKS 787
Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGSCAGVFKSG-- 682
+S + P +++ C + +++ + I+ +G
Sbjct: 788 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 847
Query: 683 --ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLAS 739
F P + A + + + ++++++ +GH + VH V ++ G +L +
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 740 VSDELVRVWSIGSGSKGECI 759
D+ +RVW K I
Sbjct: 908 SDDQTIRVWETKKVCKNSAI 927
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 115/291 (39%), Gaps = 31/291 (10%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF---HPSKEDLLCSCDNNSEIRYWSINN 672
S D+T+RVW+T + +S V+ + E ++ + DN ++ +
Sbjct: 908 SDDQTIRVWET-------KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 960
Query: 673 GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 732
G + ++ + P L + + I I+++ GHK V + +
Sbjct: 961 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1020
Query: 733 SGEYLASVS-DELVRVWSIGSG------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785
G+ L S S D +++VW+ +G + E + + F S L+
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD------------FRLLQDSRLLSW 1068
Query: 786 CYE-TLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
++ T+++WN+ + + H V S A S+ +S S DK KIW
Sbjct: 1069 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 8/170 (4%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
HT + FS R+A+ AD+T++V+ E + L H V+ F S +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAF-SSDDSY 678
Query: 656 LCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN--YISILDVE 710
+ +C + +++ W G + + Q+ F + +L A N ++ + D+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 759
+ CR + GH N V+ ++ E LAS S D +R+W + S ++ + I
Sbjct: 739 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 788
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 52/280 (18%)
Query: 548 FQLIPAST--------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599
QLI T ++V C SP + +A G D + + V S+ H +
Sbjct: 953 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1012
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ ++F+ L +SS D ++VW+ + DY H TV DF ++ L S
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSW 1068
Query: 660 DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI------------ENYISIL 707
+ ++ W++ +G + F G +L+ AI + I
Sbjct: 1069 SFDGTVKVWNV---------ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCT- 765
+ +L+GH V ++ G LA+ D +R+W++ S G+ +H SC
Sbjct: 1120 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV---SDGQLLH--SCAP 1174
Query: 766 ----------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 795
G F P +L+ G Y L+ WN+
Sbjct: 1175 ISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY--LKWWNV 1212
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V SC S D ++ DK A +W + + L+ H + FS LAT
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1154
Query: 618 DRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
+ +R+W+ + P H V + F P + L+ + +++W+
Sbjct: 1155 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA---GGYLKWWN 1211
Query: 670 INNGSCAGVFKSGATQMR 687
+ G + F + T ++
Sbjct: 1212 VATGDSSQTFYTNGTNLK 1229
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 39/307 (12%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
++ +V K T + I A +V C FS D +AT DKK +W + + + T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
EH++ + F+ + LAT S D +++WD N T GH+ +V F P
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ 712
E LL SC + +R W + + + R + R ++ E+ ++V +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN-----------ERKSINVKRFFLSS-EDPPEDVEVIVK 802
Query: 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK--FH 770
C W+ G+ + + V ++ I + IH TG+
Sbjct: 803 CCS--------------WSADGDKIIVAAKNKVLLFDIHTSGLLAEIH----TGHHSTIQ 844
Query: 771 SCVFHPTFPSLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828
C F P + L VI + +ELWN+ + K H V + S +AS D
Sbjct: 845 YCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903
Query: 829 KCVKIWK 835
+ +++W+
Sbjct: 904 QTIRVWE 910
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 108/260 (41%), Gaps = 27/260 (10%)
Query: 519 ESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 576
+S+++ AD + ++ SA T+ E + +V CHF+ LLATG +D
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKSNHLLLATGSND 722
Query: 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636
LW ++T+ HT + RFSP LA+ SAD T+R+WD + + R
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE--RKS 780
Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGSCAGVFKSG-- 682
+S + P +++ C + +++ + I+ +G
Sbjct: 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840
Query: 683 --ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLAS 739
F P + A + + + ++++++ +GH + VH V ++ G +L +
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 740 VSDELVRVWSIGSGSKGECI 759
D+ +RVW K I
Sbjct: 901 SDDQTIRVWETKKVCKNSAI 920
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 115/291 (39%), Gaps = 31/291 (10%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S ++ C FSP L LW +S + H W+ V FSP S T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF---HPSKEDLLCSCDNNSEIRYWSINN 672
S D+T+RVW+T + +S V+ + E ++ + DN ++ +
Sbjct: 901 SDDQTIRVWET-------KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 953
Query: 673 GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 732
G + ++ + P L + + I I+++ GHK V + +
Sbjct: 954 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013
Query: 733 SGEYLASVS-DELVRVWSIGSG------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785
G+ L S S D +++VW+ +G + E + + F S L+
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD------------FRLLQDSRLLSW 1061
Query: 786 CYE-TLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
++ T+++WN+ + + H V S A S+ +S S DK KIW
Sbjct: 1062 SFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 8/170 (4%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
HT + FS R+A+ AD+T++V+ E + L H V+ F S +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAF-SSDDSY 671
Query: 656 LCSCDNNSEIRYWSINNGSCAGVFKSGATQM---RFQPRLGRILAAAIEN--YISILDVE 710
+ +C + +++ W G + + Q+ F + +L A N ++ + D+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 759
+ CR + GH N V+ ++ E LAS S D +R+W + S ++ + I
Sbjct: 732 QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSI 781
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 52/280 (18%)
Query: 548 FQLIPAST--------SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599
QLI T ++V C SP + +A G D + + V S+ H +
Sbjct: 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005
Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
+ ++F+ L +SS D ++VW+ + DY H TV DF ++ L S
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQAHQETVK--DFRLLQDSRLLSW 1061
Query: 660 DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI------------ENYISIL 707
+ ++ W++ +G + F G +L+ AI + I
Sbjct: 1062 SFDGTVKVWNV---------ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCT- 765
+ +L+GH V ++ G LA+ D +R+W++ S G+ +H SC
Sbjct: 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV---SDGQLLH--SCAP 1167
Query: 766 ----------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 795
G F P +L+ G Y L+ WN+
Sbjct: 1168 ISVEEGTATHGGWVTDVCFSPDSKTLVSAGGY--LKWWNV 1205
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V SC S D ++ DK A +W + + L+ H + FS LAT
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1147
Query: 618 DRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
+ +R+W+ + P H V + F P + L+ + +++W+
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA---GGYLKWWN 1204
Query: 670 INNGSCAGVFKSGATQMR 687
+ G + F + T ++
Sbjct: 1205 VATGDSSQTFYTNGTNLK 1222
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 96 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 208
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
+F SGA A+A + DV +CR
Sbjct: 209 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 233
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
GH++ ++++C+ +G A+ SD+ R++ + + EL + C +
Sbjct: 234 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 287
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
+F LL+ G Y+ +W+ + ++ L+ HD VS L + VA+ S D
Sbjct: 288 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 346
Query: 831 VKIW 834
+KIW
Sbjct: 347 LKIW 350
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
+F SGA A+A + DV +CR
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
GH++ ++++C+ +G A+ SD+ R++ + + EL + C +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
+F LL+ G Y+ +W+ + ++ L+ HD VS L + VA+ S D
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
+KIW
Sbjct: 336 LKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
+F SGA A+A + DV +CR
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
GH++ ++++C+ +G A+ SD+ R++ + + EL + C +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
+F LL+ G Y+ +W+ + ++ L+ HD VS L + VA+ S D
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
+KIW
Sbjct: 336 LKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
+F SGA A+A + DV +CR
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
GH++ ++++C+ +G A+ SD+ R++ + + EL + C +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
+F LL+ G Y+ +W+ + ++ L+ HD VS L + VA+ S D
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
+KIW
Sbjct: 336 LKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
+T + IP +S V +C ++P G +A GG D ++ ++ V L HT
Sbjct: 85 YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
+++ RF +++ TSS D T +WD E TFTGH+ VMSL P
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
+F SGA A+A + DV +CR
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
GH++ ++++C+ +G A+ SD+ R++ + + EL + C +
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
+F LL+ G Y+ +W+ + ++ L+ HD VS L + VA+ S D
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
+KIW
Sbjct: 336 LKIW 339
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IE 701
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 748
N + I T +L+GH ++V S+ + G +AS +DE +R+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 26/286 (9%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
G +LA D LW S + L E+ ++I+ V + + LA ++ V++W
Sbjct: 127 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
D + LR T HS V SL ++ +L S + I + + SG +
Sbjct: 186 DVQQ-QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 241
Query: 685 Q----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCWNT-SGE 735
Q +R+ P + + +N +++ + + LQ H+ V +V W
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 301
Query: 736 YLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETL 790
LA+ SD +R+W++ SG+ C+ + ++ S ++ P + L+ + L
Sbjct: 302 VLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 357
Query: 791 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
+W T K L H V SL S VASA+ D+ +++W+
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLS 610
+ +V ++PDG+ LA+GG+D +W + + T +H + V + P S
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 611 R-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
LAT ++DR +R+W+ + L HS V S+ + P ++L+
Sbjct: 301 NVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKELI 347
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 332 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 391
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 392 SAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IE 701
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 748
N + I T +L+GH ++V S+ + G +AS +DE +R+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 26/286 (9%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
G +LA D LW S + L E+ ++I+ V + + LA ++ V++W
Sbjct: 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
D + LR T HS V SL ++ +L S + I + + SG +
Sbjct: 175 DVQQ-QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230
Query: 685 Q----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCWNT-SGE 735
Q +R+ P + + +N +++ + + LQ H+ V +V W
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 290
Query: 736 YLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETL 790
LA+ SD +R+W++ SG+ C+ + ++ S ++ P + L+ + L
Sbjct: 291 VLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 346
Query: 791 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
+W T K L H V SL S VASA+ D+ +++W+
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLS 610
+ +V ++PDG+ LA+GG+D +W + + T +H + V + P S
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 611 R-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
LAT ++DR +R+W+ + L HS V S+ + P ++L+
Sbjct: 290 NVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKELI 336
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 381 SAAADETLRLW 391
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
+TL H+Q + +R++P LA+ D V VW + E L+TFT H V ++
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IE 701
+ P + ++L + S+ IR W++ +G+C S + + P +++ +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 748
N + I T +L+GH ++V S+ + G +AS +DE +R+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 26/286 (9%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
G +LA D LW S + L E+ ++I+ V + + LA ++ V++W
Sbjct: 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
D + LR T HS V SL + +L S + I + + SG +
Sbjct: 95 DVQQQK-RLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150
Query: 685 Q----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQG---HKNQVHSVCWNT-SGE 735
Q +R+ P + + +N +++ + + LQ H+ V +V W
Sbjct: 151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 210
Query: 736 YLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETL 790
LA+ SD +R+W++ SG+ C+ + ++ S ++ P + L+ + L
Sbjct: 211 VLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 791 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
+W T K L H V SL S VASA+ D+ +++W+
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLS 610
+ +V ++PDG+ LA+GG+D +W + + T +H + V + P S
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 611 R-LAT--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
LAT ++DR +R+W+ + L HS V S+ + P ++L+
Sbjct: 210 NVLATGGGTSDRHIRIWNVCS-GACLSAVDAHS-QVCSILWSPHYKELI 256
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
S+V S +SP K L +G + V+W + + L+ HT + + SP + +A
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 614 TSSADRTVRVW 624
+++AD T+R+W
Sbjct: 301 SAAADETLRLW 311
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L TF H + + + P E +L S + + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 611 RLATSSADRTVRVWDTENPDYSLRT------FTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
L ++S D TV +WD + FTGHS V + +H E L S ++ +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 665 IRYWSINNGSCA------GVFKSGATQMRFQPRLGRILA-AAIENYISILDVETQVCRLK 717
+ W + + + + + F P ILA + + +++ D+ +L
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 718 -LQGHKNQVHSVCWNTSGEYL--ASVSDELVRVWSI 750
+ HK+++ V W+ E + +S +D + VW +
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 716 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSC--TGNKFHS 771
L+L+GH+ + + + WN+ SG L++ D V +W I +G K I + TG HS
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG---HS 229
Query: 772 CVFHPTFPSLLVIGCY------ETLELW----NMTENKTLTLSAHDKLVSSLAASTVNGM 821
V LL + + L +W N T + + AH V+ L+ + +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 822 V-ASASHDKCVKIW 834
+ A+ S DK V +W
Sbjct: 290 ILATGSADKTVALW 303
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
++ WS+ N + + G + + P + ++ A+ + I I D +T+ C
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
L+GH + V ++ + + S S D +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
+TF+ S V +DFHP++ +L + + + W+ + T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
+ E E F CV F+P PS GC + T+++W++ T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
++ V+ + + + +AS D +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
++ WS+ N + + G + + P + ++ A+ + I I D +T+ C
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
L+GH + V ++ + + S S D +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
+TF+ S V +DFHP++ +L + + + W+ + T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
+ E E F CV F+P PS GC + T+++W++ T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
++ V+ + + + +AS D +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
++ WS+ N + + G + + P + ++ A+ + I I D +T+ C
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
L+GH + V ++ + + S S D +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
+TF+ S V +DFHP++ +L + + + W+ + T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
+ E E F CV F+P PS GC + T+++W++ T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
++ V+ + + + +AS D +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T E + I + + V + F + G D + ++ + E H +I +
Sbjct: 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
P+ + + S D TV++W+ EN +TF GH VM + F+P S +
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
++ WS+ N + + G + + P + ++ A+ + I I D +T+ C
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
L+GH + V ++ + + S S D +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
+TF+ S V +DFHP++ +L + + + W+ + T +R F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
R I+ + + I + + T + + H + + S+ + + Y+ S SD+L V++W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
+ E E F CV F+P PS GC + T+++W++ T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
++ V+ + + + +AS D +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
PD + T D +W ++ + +TLE H ++ F P+L + + S D T+++W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 625 DT 626
++
Sbjct: 256 NS 257
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
L+ A T++V F+P + +LATG DK LW + +K T E H I V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
P + + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
++CS ++ + W
Sbjct: 389 PWVICSVSEDNIXQIW 404
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKST---LEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K +W T S T ++ HT + + F+P S LAT SAD+TV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L TF H + + + P E +L S + + W +
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 611 RLATSSADRTVRVWDTENPDYSLRT------FTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
L ++S D TV +WD + FTGHS V + +H E L S ++ +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 665 IRYWSINNGSCA------GVFKSGATQMRFQPRLGRILA-AAIENYISILDVETQVCRLK 717
+ W + + + + + F P ILA + + +++ D+ +L
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 718 -LQGHKNQVHSVCWNTSGEYL--ASVSDELVRVWSI 750
+ HK+++ V W+ E + +S +D + VW +
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 18/134 (13%)
Query: 716 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSC--TGNKFHS 771
L+L+GH+ + + + WN+ SG L++ D V +W I +G K I + TG HS
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTG---HS 229
Query: 772 CVFHPTFPSLLVIGCY------ETLELW----NMTENKTLTLSAHDKLVSSLAASTVNGM 821
V LL + + L +W N T + + AH V+ L+ + +
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 822 V-ASASHDKCVKIW 834
+ A+ S DK V +W
Sbjct: 290 ILATGSADKTVALW 303
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 716 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HS 771
L+L+GH+ + + + WN +G L++ D + +W I + K H + N F H+
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE---HRVIDAKNIFTGHT 235
Query: 772 CVFHPTFPSLLVIGCY------ETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGM 821
V LL + + L +W+ N T T+ AH V+ L+ + +
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 822 V-ASASHDKCVKIW 834
+ A+ S DK V +W
Sbjct: 296 ILATGSADKTVALW 309
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 24/186 (12%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFKSGATQMRFQPRLGRILAAA--- 699
F+P E +L + + + W + N K Q+++ P ILA++
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 700 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 745
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Query: 746 RVWSIG 751
+VW +
Sbjct: 408 QVWQMA 413
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 716 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HS 771
L+L+GH+ + + + WN +G L++ D + +W I + K H + N F H+
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE---HRVIDAKNIFTGHT 233
Query: 772 CVFHPTFPSLLVIGCY------ETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGM 821
V LL + + L +W+ N T T+ AH V+ L+ + +
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 822 V-ASASHDKCVKIW 834
+ A+ S DK V +W
Sbjct: 294 ILATGSADKTVALW 307
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 24/186 (12%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFKSGATQMRFQPRLGRILAAA--- 699
F+P E +L + + + W + N K Q+++ P ILA++
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Query: 700 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 745
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 346 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Query: 746 RVWSIG 751
+VW +
Sbjct: 406 QVWQMA 411
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD TE+ P L GH+ + ++P++
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T + T++ HT + + F+P S LAT SAD+TV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 18/134 (13%)
Query: 716 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HS 771
L+L+GH+ + + + WN +G L++ D + +W I + K H + N F H+
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE---HRVIDAKNIFTGHT 231
Query: 772 CVFHPTFPSLLVIGCY------ETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGM 821
V LL + + L +W+ N T T+ AH V+ L+ + +
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 822 V-ASASHDKCVKIW 834
+ A+ S DK V +W
Sbjct: 292 ILATGSADKTVALW 305
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 24/186 (12%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT N + S T H+ V L
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFKSGATQMRFQPRLGRILAAA--- 699
F+P E +L + + + W + N K Q+++ P ILA++
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Query: 700 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 745
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Query: 746 RVWSIG 751
+VW +
Sbjct: 404 QVWQMA 409
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
+ A T++V F+P + +LATG DK LW + +K + E H I V++SP
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
+ + LA+S DR + VWD + P L GH+ + ++P++
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
++CS ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 569 LLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624
L + D+K ++W T S +++ HT + + F+P S LAT SAD+TV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
D N L +F H + + + P E +L S + + W +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 716 LKLQGHKNQVHSVCWNT--SGEYLASVSDELVRVWSIGSGSK-GECIHELSC-TGNK--F 769
L+L+GH+ + + + WN SG L++ D + +W I + K G+ + + TG+
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVV 230
Query: 770 HSCVFHPTFPSLL-VIGCYETLELWNMTENKT----LTLSAHDKLVSSLAASTVNGMV-A 823
+H SL + + L +W+ N T ++ AH V+ L+ + + + A
Sbjct: 231 EDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 824 SASHDKCVKIW 834
+ S DK V +W
Sbjct: 291 TGSADKTVALW 301
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 24/186 (12%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSL--RTFTGHSTTVMSL 646
K+ HT + DV + L S AD + + +WDT + + S + H+ V L
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCL 279
Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFKSGATQMRFQPRLGRILAAA--- 699
F+P E +L + + + W + N K Q+++ P ILA++
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Query: 700 ----------IENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEY-LASVS-DELV 745
I S D E L GH ++ WN + + + SVS D ++
Sbjct: 340 RRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIM 399
Query: 746 RVWSIG 751
+VW +
Sbjct: 400 QVWQMA 405
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
+L SC + ++ W NG + V + +++ P G +L A+ + +S+
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
++ + + + H V+S W S +++ +D LV++W
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 751 GSGSK 755
S ++
Sbjct: 190 NSDAQ 194
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 216
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 217 TVLLRSYLASVSQDRTCIIWTQDN 240
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 32/215 (14%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVK--STLEEHT--QWITDVRFSPSLSRLATSSADRTVR 622
GK LAT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 623 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 678
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 679 FKS---GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 718
+ G + P + + +N + I D +T V L
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 719 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 749
+GH + V V W+ + YLASVS D +W+
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
GHS V L S + +R W + G F KS + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 729
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLA 244
Query: 730 WNTSGEYLASVSDELVRVWSI 750
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 710 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 764
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 823
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 824 SASHDKCVKIW 834
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
GHS V L S + +R W + G F KS + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 729
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLA 244
Query: 730 WNTSGEYLASVSDELVRVWSI 750
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 710 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 764
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 823
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 824 SASHDKCVKIW 834
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
+L SC + ++ W NG + V + +++ P G +L A+ + +S+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
++ + + + H V+S W S +++ +D LV++W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
S ++
Sbjct: 188 NSDAQ 192
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 32/215 (14%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVK--STLEEHT--QWITDVRFSPSLSRLATSSADRTVR 622
GK LAT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 623 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 678
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 679 FKS---GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 718
+ G + P + + +N + I D +T V L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 719 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 749
+GH + V V W+ + YLASVS D +W+
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D RLAT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
+L SC + ++ W NG + V + +++ P G +L A+ + +S+
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
++ + + + H V+S W S +++ +D LV++W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
S ++
Sbjct: 188 NSDAQ 192
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S LA+ S DRT +W +N
Sbjct: 215 TVLLRSYLASVSQDRTCIIWTQDN 238
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 32/215 (14%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVK--STLEEHT--QWITDVRFSPSLSRLATSSADRTVR 622
GK LAT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 623 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 678
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 679 FKS---GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 718
+ G + P + + +N + I D +T V L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 719 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 749
+GH + V V W+ + YLASVS D +W+
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
GHS V L S + +R W + G F KS + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 729
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLA 244
Query: 730 WNTSGEYLASVSDELVRVWSI 750
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 710 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 764
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 823
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 824 SASHDKCVKIW 834
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
GHS V L S + +R W + G F KS + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
I++ + + I + ++ Q C L GH + V V + S +++ +D++V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
W++ ++ + + + ++ P + G + LWN+ K + TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 673 GSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 729
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLA 244
Query: 730 WNTSGEYLASVSDELVRVWSI 750
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYW 668
+ L +N IR W
Sbjct: 296 ADGQTLFAGYTDNV-IRVW 313
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 710 ETQVCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSC 764
E V R L+GH V S+ ++G+ L++ D+ + W + G K G +
Sbjct: 5 EVLVLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG 63
Query: 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVA 823
+ C L +TL LW++ +T H V S+ M+
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 824 SASHDKCVKIW 834
S S DK +K+W
Sbjct: 124 SGSRDKTIKVW 134
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R+AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
+L SC + ++ W NG + V + +++ P G +L A+ + +S+
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
++ + + + H V+S W S +++ +D LV++W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
S ++
Sbjct: 188 NSDAQ 192
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S +A+ S DRT +W +N
Sbjct: 215 TVLLRSYMASVSQDRTCIIWTQDN 238
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 83/215 (38%), Gaps = 32/215 (14%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVK--STLEEHT--QWITDVRFSPSLSRLATSSADRTVR 622
GK +AT DK ++ E T K TL H W D + LA+ S D V
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 623 VWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGV 678
+W EN +S + HS +V S+ + P + L+ S D + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140
Query: 679 FKS---GATQMRFQPRL-------------GRILAAAIENYISIL----DVETQVCRLKL 718
+ G + P + + +N + I D +T V L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 719 QGHKNQVHSVCWNTS---GEYLASVS-DELVRVWS 749
+GH + V V W+ + Y+ASVS D +W+
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 33/261 (12%)
Query: 587 FTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFTGH 639
++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F GH
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 58
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRIL 696
S V L S + +R W + G F KS + + I+
Sbjct: 59 SHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 697 AAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRVWS 749
+ + + I + ++ Q C L GH + V V + S +++ +D++V+ W+
Sbjct: 118 SGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 750 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK 808
+ ++ + + + ++ P + G + LWN+ K + TLSA D+
Sbjct: 177 L---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
Query: 809 LVS--------SLAASTVNGM 821
+ S LAA+T G+
Sbjct: 234 VFSLAFSPNRYWLAAATATGI 254
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 122 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 673 GSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 729
F S + P I +A + I + ++ + L +++V S+
Sbjct: 180 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLA 238
Query: 730 WNTSGEYLASVSDELVRVWSI 750
++ + +LA+ + ++V+S+
Sbjct: 239 FSPNRYWLAAATATGIKVFSL 259
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + +LW + TL
Sbjct: 173 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + +P Y LR F G+S +SL +
Sbjct: 233 E-VFSLAFSPNRYWLAAATA-TGIKVF-SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS 289
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 290 ADGQTLFAGYTDNV-IRVWQV 309
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 7/128 (5%)
Query: 713 VCRLKLQGHKNQVHSVCWNTSGE---YLASVSDELVRVWSI-GSGSK-GECIHELSCTGN 767
V R L+GH V S+ ++G+ L++ D+ + W + G K G + +
Sbjct: 2 VLRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASAS 826
C L +TL LW++ +T H V S+ M+ S S
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
Query: 827 HDKCVKIW 834
DK +K+W
Sbjct: 121 RDKTIKVW 128
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
WD EN + + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGEL-MYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 27/168 (16%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSI 670
L + S DRTVRVWD + + F GH++TV LD K + + ++ + W +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 671 -----------------------NNGSCAGVFKSGATQMRFQPRLGRILAA-AIENYISI 706
N GV + +R G I+ + + +N + +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753
DV C L GH ++++S ++ + S S D +R+W + +G
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 116/279 (41%), Gaps = 49/279 (17%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRF-----QPRLGRILAAAIENY 703
+ +L S + +R W I G C VF+ + +R + I+ + +N
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 704 ISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN----TSGEY 736
+ + + E L+GH V +V + SG Y
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288
Query: 737 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796
D + VW + ++ +C++ LS ++ +S ++ + T+ +W++
Sbjct: 289 -----DNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 797 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
+ + TL H LV L S + + SA+ D ++ W
Sbjct: 341 NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKSGATQMRFQPRLGRILAAAIE----NYISILD 708
+ +G A + K A Q+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKD-ADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 98/264 (37%), Gaps = 40/264 (15%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRTVRVW 624
G +L +G D+ +W + E H + D+ ++ + T S D T+ VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 625 DT-----------------------ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
ENP Y + GH +V ++ H +++ S
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENP-YFVGVLRGHMASVRTVSGHG---NIVVSGSY 288
Query: 662 NSEIRYWSINNGSCAGVFKSGATQMR---FQPRLGRILAAAIENYISILDVETQVCRLKL 718
++ + W + C + ++ + R ++A+++ I I D+E L
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Query: 719 QGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777
QGH V + S ++L S +D +R W S+ H + + F+ +
Sbjct: 349 QGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA----ITTFYVS 402
Query: 778 FPSLLVIGCYETLELWNMTENKTL 801
++LV G ++N+ K +
Sbjct: 403 -DNILVSGSENQFNIYNLRSGKLV 425
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
E ++ TLE H W+T + S P+L L ++S D+T+ W D + +R+F
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
GHS V L S + +R W + G F KS + +
Sbjct: 63 GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
I++ + + I + ++ Q C L GH + V V + S +++ +D+ V+
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLSAH 806
W++ ++ + + + ++ P + G + LWN+ K TLSA
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
D++ S LAA+T G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 82/201 (40%), Gaps = 11/201 (5%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+ C + DG + DK LW + H + V S + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-----LLCSCDNNSEIRYWSINN 672
D+T++VW + L T GH+ V + P+++ + S N+ ++ W++N
Sbjct: 128 DKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 673 GSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 729
F S + P I +A + I + ++ + L +++V S+
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA-QDEVFSLA 244
Query: 730 WNTSGEYLASVSDELVRVWSI 750
++ + +LA+ + ++V+S+
Sbjct: 245 FSPNRYWLAAATATGIKVFSL 265
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 541 KGFTFTEFQL---IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT 597
K + +FQ+ S + + SPDG L+A+ G D + LW + TL
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD 238
Query: 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLR-TFTGHSTT----VMSLDFH 649
+ + + FSP+ LA ++A ++V+ + P Y LR F G+S +SL +
Sbjct: 239 E-VFSLAFSPNRYWLAAATA-TGIKVFSLD-PQYLVDDLRPEFAGYSKAAEPHAVSLAWS 295
Query: 650 PSKEDLLCSCDNNSEIRYWSI 670
+ L +N IR W +
Sbjct: 296 ADGQTLFAGYTDNV-IRVWQV 315
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 27/168 (16%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSI 670
L + S DRTVRVWD + + F GH++TV LD K + + ++ + W +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCT-HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 671 -----------------------NNGSCAGVFKSGATQMRFQPRLGRILAA-AIENYISI 706
N GV + +R G I+ + + +N + +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753
DV C L GH ++++S ++ + S S D +R+W + +G
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG 342
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 51/280 (18%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
++TL H T IT ++F + + T + D+ +RV+D+ N + L+ +GH V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRF-----QPRLGRILAAAIENY 703
+ +L S + +R W I G C VF+ + +R + I+ + +N
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 704 ISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN----TSGEY 736
+ + + E L+GH V +V + SG Y
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSY 288
Query: 737 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796
D + VW + ++ +C++ LS ++ +S ++ + T+ +W++
Sbjct: 289 -----DNTLIVWDV---AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL- 339
Query: 797 ENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
EN L TL H LV L S + + SA+ D ++ W
Sbjct: 340 ENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623
S G ++ +G +D ++W L HT I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
WD EN + T GH+ V L + L S + IR W N+ S
Sbjct: 337 WDLENGELXY-TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
++ T ++ S + + K + D +W E+ + TL+ HT + +R S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
L +++AD ++R WD DYS R F+ H T + ++ +++L S N + ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKSGATQMRFQPRLGRILAAAIE----NYISILD 708
+ +G A + K A Q+ G+ L AA+E +++ ILD
Sbjct: 419 LRSGKLVHANILKD-ADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 97/264 (36%), Gaps = 40/264 (15%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRTVRVW 624
G +L +G D+ +W + E H + D+ ++ + T S D T+ VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 625 DT-----------------------ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
ENP Y + GH +V ++ H +++ S
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENP-YFVGVLRGHXASVRTVSGHG---NIVVSGSY 288
Query: 662 NSEIRYWSINNGSCAGVFKSGATQMR---FQPRLGRILAAAIENYISILDVETQVCRLKL 718
++ + W + C + ++ + R ++A+ + I I D+E L
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Query: 719 QGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777
QGH V + S ++L S +D +R W S+ H + + F+ +
Sbjct: 349 QGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA----ITTFYVS 402
Query: 778 FPSLLVIGCYETLELWNMTENKTL 801
++LV G ++N+ K +
Sbjct: 403 -DNILVSGSENQFNIYNLRSGKLV 425
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
H + I D R AT S+D+T+++++ E + L T TGH V +D+ HP
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
+L SC + ++ W NG + V + +++ P G +L A+ + +S+
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
++ + + + H V+S W S +++ +D LV++W
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
S ++
Sbjct: 188 NSDAQ 192
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 607
PA+ + + + + + TGG D +W +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 608 SL---SRLATSSADRTVRVWDTEN 628
++ S A+ S DRT +W +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 93/204 (45%), Gaps = 9/204 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
VE S DG+ +G D + LW + HT+ + V FS ++ ++S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 618 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN-- 672
DRT+++W+T Y++ GH V + F P+ + + S + ++ W+++N
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 673 --GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 730
+ AG +G G + A+ ++ + +L + +L + +H++C+
Sbjct: 553 LRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610
Query: 731 NTSGEYLASVSDELVRVWSIGSGS 754
+ + +L + ++ +++W + S S
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKS 634
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V + SPDG L A+GG D +LW +LE ++ I + FSP+ L
Sbjct: 561 TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCA 619
Query: 615 SSADRTVRVWDTEN 628
++ + +++WD E+
Sbjct: 620 AT-EHGIKIWDLES 632
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 771
V + +L GH + V V ++ G++ S S D +R+W + +G S
Sbjct: 421 VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV---STRRFVGHTKDVLS 477
Query: 772 CVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAAS--TVNGMVASA 825
F ++ T++LWN T+S H VS + S T+ + SA
Sbjct: 478 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537
Query: 826 SHDKCVKIW 834
S DK VK+W
Sbjct: 538 SWDKTVKVW 546
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 742 DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYE-TLELWNMTEN- 798
D+ + +W + K + + TG+ F V + + G ++ L LW++
Sbjct: 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGV 463
Query: 799 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
T H K V S+A S N + SAS D+ +K+W
Sbjct: 464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/307 (19%), Positives = 121/307 (39%), Gaps = 28/307 (9%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+ KV S ++P+ + + D + ++W + ++ H W+ + F+P+ +A
Sbjct: 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 615 SSADRTVRVWDTE---NPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
D +++ + D ++ R TGH S + P +E L + + W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 669 SINNGSCAGV----FKSGATQMRFQPRLGRI-----LAAAIENYISILDVE-TQVCRLKL 718
+ G + F SG T + + ++ + + + + D+ T
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECI--------HELSCTGNKF 769
GH+ ++SV + G+ + SD+ R++ + +G + + +EL +
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305
Query: 770 HSCVFHPTFPSLLVIGCY--ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827
S F CY +TL L M N ++H+ +S L S+ + + S
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTL-LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364
Query: 828 DKCVKIW 834
DK +KIW
Sbjct: 365 DKNLKIW 371
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ S F P + +G D ++ F KST EHT+++ VR++P S A++
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 617 ADRTVRVWDTEN-------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
D T+ +++ + D SL+ HS +V L + P + S + I+ W+
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWN 267
Query: 670 INNGSCAGVFKSGATQMRFQPRLGRI------LAAAIENYISILDVETQVCRLKLQGHKN 723
+ G T++ Q +LG I ++ + +I+ ++ E GH
Sbjct: 268 VATLKVEKTIPVG-TRIEDQ-QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK 325
Query: 724 QVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGEC---IHELSCTGNK 768
+ ++ + G+ L S E + W I +G +H TG K
Sbjct: 326 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 607
T V S ++PDG L A+ G D VL+ T E+ H+ + + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 608 SLSRLATSSADRTVRVWD 625
+++A++SAD+T+++W+
Sbjct: 250 DGTKIASASADKTIKIWN 267
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 93/258 (36%), Gaps = 48/258 (18%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHST 641
S T EH+ T + SPS A+ VR+WDT + L+T F+G
Sbjct: 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG--- 104
Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRY-WSINNGSCAGVFKSGATQMR---FQP-RLGRIL 696
V + + + + + + + + G+ G A M F+P R RI+
Sbjct: 105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 164
Query: 697 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 756
+ + +N ++I + + H VHSV +N G AS +G G
Sbjct: 165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS------------TGGDG 212
Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 816
+ G K G +E L N+ AH V L S
Sbjct: 213 TIVLYNGVDGTK---------------TGVFEDDSLKNV---------AHSGSVFGLTWS 248
Query: 817 TVNGMVASASHDKCVKIW 834
+ASAS DK +KIW
Sbjct: 249 PDGTKIASASADKTIKIW 266
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLW-CTESFTVKST--LEEHTQWITDVRFSPSLSRL 612
+++ S FS +G L +K + + +F + T HT + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 613 ATSSADRTVRVWDTENP-DYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
AT S D +V VW+ P D+ + H+ ++V S+ + E + S +S I++W++
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWNV 609
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 116/272 (42%), Gaps = 18/272 (6%)
Query: 576 DKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634
++ +W +S +V + E + + ++ V++S S L+ + V ++D E+ LR
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLR 170
Query: 635 TFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRL 692
T GH V +S + H ++ ++R + G+ G S + ++
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDG 229
Query: 693 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVW 748
++ + +N + I D + + + H V +V W L + D+ + W
Sbjct: 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 749 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMTEN---KTLTL 803
+ +G++ + G++ S ++ P ++ + L +W+ + + K + +
Sbjct: 290 NAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345
Query: 804 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
AHD V A S ++++A+ D+ +K W+
Sbjct: 346 PAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+S+V + DG LA+GG+D +W S K T H + V + P S L
Sbjct: 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLA 276
Query: 615 S---SADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCS---CDNNSEIRY 667
+ + D+ + W N R T + + V SL + P ++++ + DNN I
Sbjct: 277 TGGGTMDKQIHFW---NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSI-- 331
Query: 668 WS 669
WS
Sbjct: 332 WS 333
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654
EH ++ V S ++ + S D ++VWD L ++ H+ V + P K+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKSGA-----TQMRFQPRLGRILAAAIEN-YISILD 708
+ SC ++ I W A A T + + P+ + EN +S++D
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 709 VETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVSDE 743
++ C L H V + ++ S +LAS+S++
Sbjct: 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 790 LELWNMTENKTLTLSA-----HDKLVSSLAASTVNGMVASASHDKCVKIW 834
+ELW + EN+TL +S HD +VS+++ + S S D C+K+W
Sbjct: 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 103/227 (45%), Gaps = 43/227 (18%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTVKSTL-------EEHTQWITDVRFSPSLSRL 612
+G+ + +GG D VL+ E+ +T K+ + H + V++ P + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 613 ATSSA-DRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRY 667
TSS+ D+T++VWDT +L+T TV S P +K L+ +++
Sbjct: 115 FTSSSFDKTLKVWDTN----TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 668 WSINNGSCAGVFKSGATQM---RFQPRLGRILA-AAIENYISILDV-------------- 709
+ +GSC+ + + ++ + PR ILA A+ ++ + + DV
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 710 --ETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-SDELVRVWSIGSG 753
++Q H +V+ +C+ + G +L +V +D +R+W+ +G
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT--QMRFQPRLGRIL 696
H +V ++ ++P + S + ++ W N A VF T P +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 697 AAAIENY---ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV--SDELVRVWSI- 750
A+ + + D+++ C LQGH+ ++ +V W+ +Y+ + +D V++W +
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 751 -----------GSGSKGECIHELSCTGN-KFHSCVFHPTFPSLLVIGCYETLELWNMTEN 798
+G K + + + N K + F LL +G + LWN + N
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN-SSN 276
Query: 799 KTLTLSAHDKLVSS 812
TL + K+ ++
Sbjct: 277 GENTLVNYGKVCNN 290
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 18/134 (13%)
Query: 558 VESCHFSPDGK---LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LA 613
V S H SP L+A G K L +S + L+ H Q I V +SP LA
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILA 203
Query: 614 TSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLD-FHPSKEDLLC---------SC 659
T+SAD V++WD L T H S V S + H K + LC +
Sbjct: 204 TASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263
Query: 660 DNNSEIRYWSINNG 673
++ +R W+ +NG
Sbjct: 264 GTDNRMRLWNSSNG 277
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
L H + +T V+++ L + S D + VW + N + L T GH+ T+ S+D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENY------I 704
+ + + S I+ W ++NG C +KS ++ F P G A ++N I
Sbjct: 87 KYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSI 144
Query: 705 SILDVETQVCRLKLQG------HKNQVHS-------VCWNTSGEYLAS 739
+I ++E +L HK H W+T G+Y+ +
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
++ +G LL + D A +W + + TL+ HT I + T SAD +++
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 623 VWDTEN 628
+WD N
Sbjct: 100 LWDVSN 105
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLW-CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
+S GK + G D K + + ++ +++ H + I+D++FSP L+ TSS D
Sbjct: 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 80/203 (39%), Gaps = 10/203 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATS 615
+ SC PDG L GG +W + T +K+ L + SP +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
+D + VWD N +R F GH+ +D L +N+ +R W + G
Sbjct: 160 CSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQ 217
Query: 676 AGV--FKSGATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCWNT 732
F S + + P G LA +E+ + +L V + +L H++ V S+ +
Sbjct: 218 LQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAY 275
Query: 733 SGEYLASVS-DELVRVWSIGSGS 754
G++ S D L+ W G+
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGA 298
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 555 TSKVESCH---FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
TS +C+ SPD K+ + D +W + T+ + HT + + S ++
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 612 LATSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655
L T D TVR WD E FT + + SL + P+ E L
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWL 239
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 745 VRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETLELWNM---TENK 799
V+VW I + +L C N SC P +L+V G TL +W++ T
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 800 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
L++ +LA S + + S D + +W
Sbjct: 134 KAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 7/172 (4%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624
DG +GG D +W V + H+ + V P + S D + +W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK 680
DT P + R F T S+ +HP K+D D + +I N A V
Sbjct: 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS 269
Query: 681 SGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWN 731
T + + LA+ E+ +++LD + L H++ V V W+
Sbjct: 270 QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWS 320
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDF-HPSKE 653
H I D + +RLAT S+DR+V+++D N L GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 654 DLLCSCDNNSEIRYWSINNGS 674
++L SC + ++ W NG+
Sbjct: 72 NILASCSYDRKVIIWREENGT 92
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 568 KLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSL----SRLATSSADRT 620
K A+GG D LW E + + LE H+ W+ DV ++PS+ S +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 621 VRVWDTEN 628
V +W ++
Sbjct: 240 VFIWTCDD 247
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 191
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 192 RGRNVL-SASLDGTIRLWECGTGTTIHTF 219
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 197 LSASLDGTIRLWE 209
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
++ R + E I +LD + R Q H +++ + + SGE L S S ++ +++WS
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 750 IGSGS 754
+ GS
Sbjct: 168 VKDGS 172
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHP 650
+ H IT ++F PS L +SS D +++W D NP RT GH TV +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAIID 188
Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++L S + IR W G+ F
Sbjct: 189 RGRNVL-SASLDGTIRLWECGTGTTIHTF 216
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
A S++ F P G+ L + D + +W + + TL H +TD+ +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 613 ATSSADRTVRVWD 625
++S D T+R+W+
Sbjct: 194 LSASLDGTIRLWE 206
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
++ R + E I +LD + R Q H +++ + + SGE L S S ++ +++WS
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 750 IGSGS 754
+ GS
Sbjct: 165 VKDGS 169
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 656
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 657 C-SCDNNSEI 665
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQW 599
G + + + +V ++PD + T G D+ A +W + T K TL +
Sbjct: 39 GNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98
Query: 600 ITDVRFSPSLSRLATSSADRTVRV--WDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLL 656
VR++P+ + A S R + + ++ EN + + +TV+SLD+HP+ L
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158
Query: 657 C-SCDNNSEI 665
SCD I
Sbjct: 159 AGSCDFKCRI 168
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 14/179 (7%)
Query: 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642
C E V T + + +F + + A + + T D ++ GH+
Sbjct: 24 CYEDVRVSQTTWDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAP 83
Query: 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR-FQPRLGRI------ 695
V+ + + P ++++ S + + W I +G + + R+G +
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 696 ----LAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLA-SVSDELVRV 747
L+A +N I + DV T L L H + ++SV W+ G + S D+ VRV
Sbjct: 144 QNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 14/179 (7%)
Query: 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642
C E V T + + +F + + A + + T D ++ GH+
Sbjct: 24 CYEDVRVSQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAP 83
Query: 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR-FQPRLGRI------ 695
V+ + + P ++++ S + + W I +G + + R+G +
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 696 ----LAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLA-SVSDELVRV 747
L+A +N I + DV T L L H + ++SV W+ G + S D+ VRV
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 561 CHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLAT 614
C S G L TG DK L C HT + D+ + P + + +A+
Sbjct: 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCG-----------HTAPVLDIAWCPHNDNVIAS 99
Query: 615 SSADRTVRVWDTENPDYSLR--------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
S D TV VW E PD L T GH+ V + +HP+ +++L S ++ I
Sbjct: 100 GSEDCTVMVW--EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL 157
Query: 667 YWSINNGS 674
W + G+
Sbjct: 158 VWDVGTGA 165
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 46/200 (23%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATSSADR 619
C S ++ +G DK A +W S L+ H + D + S S ++ T+SAD+
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
T+++W D ++TF+G +N +R+ ++ +
Sbjct: 166 TIKLWQN---DKVIKTFSGI---------------------HNDVVRHLAVVDD------ 195
Query: 680 KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 739
G ++ + + I ++D T +GH++ V+ + +G+ ++
Sbjct: 196 -------------GHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSC 242
Query: 740 VSDELVRVWSIGSGSKGECI 759
D VR+WS +GS + I
Sbjct: 243 GEDRTVRIWSKENGSLKQVI 262
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET----LE 791
+ASVS D VR+WS G ++ TG F + V + + LL+ G +T +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVY----TGQGFLNSVCYDSEKELLLFGGKDTXINGVP 87
Query: 792 LWNMT-ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
L+ + E+ TL H V SL S +G+V S S DK K+WK
Sbjct: 88 LFATSGEDPLYTLIGHQGNVCSL--SFQDGVVISGSWDKTAKVWK 130
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 598 QWITDVRFSPSLS-RLATSSA---DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK 652
Q ++ V + P S R+AT++ D ++ +WD N + L+T GH ++SLD+
Sbjct: 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT---QMRFQPRLGRILA-AAIENYISILD 708
E LL S ++ + W+ + F + + +F P + A A+ +N I +
Sbjct: 275 EHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334
Query: 709 VETQVCRLKLQ 719
++ L Q
Sbjct: 335 LQNLTNTLDEQ 345
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
+ N S+ F+ HS++V ++ F+ ++++L S NN EI W +N
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADR 619
CH D LL + G D +LW ES S W +F+P L A +S D
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 620 TVRVWDTEN 628
+ V +N
Sbjct: 329 KIEVQTLQN 337
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 299
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 300 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 331
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD---- 647
L H + +T V +P LAT+S D+TV++WD LR G ++ + SL
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD-------LRQVRGKASFLYSLPHRHP 298
Query: 648 -----FHPSKEDLLCSCDNNSEIRYWSINNGSC 675
F P LL + D SEIR +S + C
Sbjct: 299 VNAACFSPDGARLL-TTDQKSEIRVYSASQWDC 330
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 263 STKLLTTDQRNEIRVYS 279
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 596 HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSK 652
H +T F+P L ATSS D TV++WD N S H V + F+P+
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 653 EDLLCSCDNNSEIRYWS 669
L + D +EIR +S
Sbjct: 262 STKLLTTDQRNEIRVYS 278
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 190
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVS 811
+CI GN + FHP P+LL+ + L LWN+ + + + H V
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 201
Query: 812 SLAASTVNGMVASASHDKCVKIWK 835
S + + S D +K+W+
Sbjct: 202 SADYDLLGEKIMSCGMDHSLKLWR 225
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 149
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVS 811
+CI GN + FHP P+LL+ + L LWN+ + + + H V
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 812 SLAASTVNGMVASASHDKCVKIWK 835
S + + S D +K+W+
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLWR 184
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 154
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVS 811
+CI GN + FHP P+LL+ + L LWN+ + + + H V
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165
Query: 812 SLAASTVNGMVASASHDKCVKIWK 835
S + + S D +K+W+
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLWR 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVS 811
+CI GN + FHP P+LL+ + L LWN+ + + + H V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 812 SLAASTVNGMVASASHDKCVKIWK 835
S + + S D +K+W+
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
++ + GH + L FHP +LL S + +R W+I + +F
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF 153
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTL----SAHDKLVS 811
+CI GN + FHP P+LL+ + L LWN+ + + + H V
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 812 SLAASTVNGMVASASHDKCVKIWK 835
S + + S D +K+W+
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 612 LATSSADRTVRVWD---TENPDYSLRTFTGHST----TVMSLDFHPSKEDLLCSCDNNSE 664
+ T S D TV+VWD ++P ++ G + TV + + +E ++C+ +N +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 665 IRYWSINNGSC--AGVFKSGATQMRFQPR---LGRILAAAIENYISILDVETQ 712
I+ + + N + K+G + F + + +++A ++E + D+ TQ
Sbjct: 192 IKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
+AT D + +WD + H + + FHPS + L +C + + +W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SR 611
S V FSPD G+ + T G D+K + +S +E+ + + F+ S +
Sbjct: 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 266
Query: 612 LATSSADRTVRVWDT 626
AT AD T+RVWD
Sbjct: 267 FATVGADATIRVWDV 281
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 53/322 (16%)
Query: 549 QLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC--------TESFTVKSTLEEHTQ 598
Q +S V + FSP + L +G K ++W + VKS +
Sbjct: 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117
Query: 599 WITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654
I+D+ + RL R WD+ N SL +GHS + + S+
Sbjct: 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRPX 174
Query: 655 LLCSCDNNSEIRYWSINNGSCAGVFKSGATQ------------MRFQPRLGR-ILAAAIE 701
+ ++ + ++ FK A+ + F P G ++ +
Sbjct: 175 RSXTVGDDGSVVFYQ------GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228
Query: 702 NYISILDVETQVCRLKLQGHKNQVH----SVCWNTSGEYLASVSDELVRVWSIGSGSKGE 757
IS D ++ ++ + V ++ W S ++ +D +RVW + + +
Sbjct: 229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV---TTSK 285
Query: 758 CIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS 812
C+ + + GN+ V ++ + TL + + ++ L T+S H+K +++
Sbjct: 286 CVQKWTLDKQQLGNQ-QVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITA 344
Query: 813 LAASTVNGMVASASHDKCVKIW 834
L TVN ++ S S+D + W
Sbjct: 345 L---TVNPLI-SGSYDGRIXEW 362
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 717 KLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775
KL GH + + +N + + L S SD+ +R+W G+G+ C + S S V
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS------QSIVSA 295
Query: 776 PTFPSLLVIGCYE--TLELWNMTENKTLTLSAHD 807
VI C ++ LW++ +N L LS D
Sbjct: 296 SWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVD 329
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 718 LQGHKNQVHSVCWNTSGEYLASVSDELVRV-WSIGSGSKGECIHELSCTGNKFHSCVFHP 776
L H+ + SV WN G ++ S+ E V + W++ SG+ + EL TG + H
Sbjct: 145 LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHS 203
Query: 777 TFPSL------------LVIGCYETLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVA 823
SL ++ G + ++ +TE T L H +S L + N ++
Sbjct: 204 GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL 263
Query: 824 SASHDKCVKIW 834
SAS D ++IW
Sbjct: 264 SASDDGTLRIW 274
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 246 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 305
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 306 SLSFNDSGE-TLCSAGWDGKLRFWDV 330
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 242 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 300
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 301 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 334
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 16/86 (18%)
Query: 600 ITDVRFSPSLSRLAT---SSADRTVRVWDTEN---------PDYSLRTFTG---HSTTVM 644
I V+FSP S LA S++ + +++TE P +S + G HS+ VM
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295
Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSI 670
SL F+ S E LCS + ++R+W +
Sbjct: 296 SLSFNDSGE-TLCSAGWDGKLRFWDV 320
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAV----LWCTE------SFTV-----KSTLEE--H 596
+++ + S FSP G LLA HD + L+ TE S +V +++L E H
Sbjct: 232 NSNSIRSVKFSPQGSLLAIA-HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 290
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
+ W+ + F+ S L ++ D +R WD + +
Sbjct: 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 39/163 (23%)
Query: 606 SPSLSRL-ATSSADRTVRVWDTENPDYS---------LRTFTGHSTTVMSLDFHPSKEDL 655
SP R+ A++S D+TV++W+ E+PD L T ++ S+ F P+ L
Sbjct: 67 SPEYGRIIASASYDKTVKLWE-EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 125
Query: 656 LCSCDNN------------SEIRYWSINN----------GSCAGVFKSGATQMRFQPRLG 693
+C N S++R W++ + F RF P
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-- 183
Query: 694 RILAAAIENYISIL---DVETQVCRLKLQGHKNQVHSVCWNTS 733
++ +A+E I D + V KL GHK+ + S+ W S
Sbjct: 184 KLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAPS 225
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 39/163 (23%)
Query: 606 SPSLSRL-ATSSADRTVRVWDTENPDYS---------LRTFTGHSTTVMSLDFHPSKEDL 655
SP R+ A++S D+TV++W+ E+PD L T ++ S+ F P+ L
Sbjct: 67 SPEYGRIIASASYDKTVKLWE-EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 125
Query: 656 LCSCDNN------------SEIRYWSINN----------GSCAGVFKSGATQMRFQPRLG 693
+C N S++R W++ + F RF P
Sbjct: 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPE-- 183
Query: 694 RILAAAIENYISIL---DVETQVCRLKLQGHKNQVHSVCWNTS 733
++ +A+E I D + V KL GHK+ + S+ W S
Sbjct: 184 KLAVSALEQAIIYQRGKDGKLHVA-AKLPGHKSLIRSISWAPS 225
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 781 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSL--AASTVNGMVASASHDKCVKIW 834
+ C +T ++W+++ N+ + ++ HD V ++ + V + S DK +K W
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 563 FSPD---GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
FSP G L G W + T+ + HT + DV +S S++ T+S
Sbjct: 47 FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 618 DRTVRVWD 625
D+T ++WD
Sbjct: 107 DKTAKMWD 114
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 549 QLIPAS----TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604
Q IP + T V +S DG + T DK A +W S + +H + +
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-NQAIQIAQHDAPVKTIH 134
Query: 605 F--SPSLSRLATSSADRTVRVWDTE 627
+ +P+ S + T S D+T++ WDT
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 39/163 (23%)
Query: 606 SPSLSRL-ATSSADRTVRVWDTENPDYS---------LRTFTGHSTTVMSLDFHPSKEDL 655
SP R+ A++S D+TV++W+ E+PD L T ++ S+ F P+ L
Sbjct: 65 SPEYGRIIASASYDKTVKLWE-EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 123
Query: 656 LCSCDNN------------SEIRYWSINN----------GSCAGVFKSGATQMRFQPRLG 693
+C N S++R W++ + F RF P
Sbjct: 124 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-- 181
Query: 694 RILAAAIENYISIL---DVETQVCRLKLQGHKNQVHSVCWNTS 733
++ +A+E I D + V KL GHK+ + S+ W S
Sbjct: 182 KLAVSALEQAIIYQRGKDGKLHVAA-KLPGHKSLIRSISWAPS 223
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 15/68 (22%)
Query: 601 TDVRFSPSLSRLATSSADRTVRV---------WDTENPDYSLRTFTGHSTTVMSLDFHPS 651
T VR+SP+ + A S R + V W +++ LR+ T++SLD+HP+
Sbjct: 104 TFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS------TILSLDWHPN 157
Query: 652 KEDLLCSC 659
L C
Sbjct: 158 NVLLAAGC 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,475,020
Number of Sequences: 62578
Number of extensions: 798768
Number of successful extensions: 2780
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1686
Number of HSP's gapped (non-prelim): 460
length of query: 835
length of database: 14,973,337
effective HSP length: 107
effective length of query: 728
effective length of database: 8,277,491
effective search space: 6026013448
effective search space used: 6026013448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)