Query 003271
Match_columns 835
No_of_seqs 1181 out of 3052
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 20:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 3.8E-44 8.2E-49 371.6 26.5 306 505-835 126-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 3.6E-42 7.9E-47 356.9 25.8 287 546-835 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-40 3.1E-45 349.6 24.6 283 548-835 168-458 (459)
4 KOG0286 G-protein beta subunit 100.0 7.8E-38 1.7E-42 315.7 34.4 290 543-835 43-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 5.5E-38 1.2E-42 330.2 22.0 270 501-794 182-458 (459)
6 KOG0265 U5 snRNP-specific prot 100.0 1.3E-35 2.9E-40 300.8 28.6 287 546-833 38-334 (338)
7 KOG0279 G protein beta subunit 100.0 5.1E-34 1.1E-38 286.8 33.3 283 546-835 6-311 (315)
8 KOG0266 WD40 repeat-containing 100.0 2.1E-33 4.5E-38 322.6 41.1 284 548-835 151-452 (456)
9 cd00200 WD40 WD40 domain, foun 100.0 3.2E-33 7E-38 293.9 37.7 282 549-835 3-289 (289)
10 KOG0295 WD40 repeat-containing 100.0 5.7E-35 1.2E-39 302.6 23.7 288 544-835 97-404 (406)
11 KOG0318 WD40 repeat stress pro 100.0 3.7E-33 7.9E-38 300.3 37.5 337 494-835 59-558 (603)
12 KOG0318 WD40 repeat stress pro 100.0 2.2E-33 4.7E-38 302.0 35.7 305 508-835 162-600 (603)
13 KOG0285 Pleiotropic regulator 100.0 1.9E-34 4.1E-39 297.4 26.2 288 542-835 138-437 (460)
14 KOG0315 G-protein beta subunit 100.0 1.4E-33 3E-38 279.2 31.3 287 505-816 9-309 (311)
15 KOG0315 G-protein beta subunit 100.0 2.2E-33 4.7E-38 277.8 29.7 266 568-835 11-286 (311)
16 KOG0284 Polyadenylation factor 100.0 3.4E-35 7.4E-40 307.8 16.9 275 555-835 96-378 (464)
17 KOG0279 G protein beta subunit 100.0 5.8E-33 1.2E-37 279.3 29.6 272 505-796 27-313 (315)
18 KOG0273 Beta-transducin family 100.0 5.2E-33 1.1E-37 295.9 29.6 314 506-835 191-521 (524)
19 KOG0645 WD40 repeat protein [G 100.0 5.5E-32 1.2E-36 271.1 34.0 281 545-835 4-309 (312)
20 KOG0282 mRNA splicing factor [ 100.0 8.4E-34 1.8E-38 303.3 19.4 288 546-835 205-503 (503)
21 KOG0291 WD40-repeat-containing 100.0 9.6E-32 2.1E-36 299.2 36.3 310 502-835 273-610 (893)
22 KOG0293 WD40 repeat-containing 100.0 4.4E-33 9.4E-38 291.8 22.6 288 542-835 211-511 (519)
23 KOG0291 WD40-repeat-containing 100.0 3.3E-31 7.2E-36 294.9 38.7 314 507-835 109-506 (893)
24 KOG0296 Angio-associated migra 100.0 9.6E-32 2.1E-36 278.9 31.5 326 481-835 54-396 (399)
25 KOG0286 G-protein beta subunit 100.0 1.4E-31 3E-36 270.6 31.9 275 481-794 57-343 (343)
26 KOG0273 Beta-transducin family 100.0 2.7E-32 5.8E-37 290.6 27.4 280 548-835 172-480 (524)
27 KOG0263 Transcription initiati 100.0 6.3E-32 1.4E-36 304.3 28.1 274 547-825 370-703 (707)
28 PLN00181 protein SPA1-RELATED; 100.0 2.4E-30 5.3E-35 317.6 40.8 282 551-835 479-791 (793)
29 KOG0319 WD40-repeat-containing 100.0 8.6E-31 1.9E-35 291.9 31.3 288 544-835 312-617 (775)
30 KOG0263 Transcription initiati 100.0 2.5E-31 5.5E-36 299.4 27.0 252 497-753 381-651 (707)
31 KOG0319 WD40-repeat-containing 100.0 1.5E-30 3.2E-35 290.0 29.1 317 496-835 107-575 (775)
32 KOG0284 Polyadenylation factor 100.0 6E-32 1.3E-36 283.4 16.1 276 481-795 98-379 (464)
33 KOG0281 Beta-TrCP (transducin 100.0 8.4E-32 1.8E-36 276.5 15.2 269 548-835 190-475 (499)
34 KOG0295 WD40 repeat-containing 100.0 1.2E-30 2.6E-35 270.6 23.6 277 495-795 109-405 (406)
35 KOG0316 Conserved WD40 repeat- 100.0 8.6E-30 1.9E-34 250.4 26.2 279 546-834 8-296 (307)
36 KOG0276 Vesicle coat complex C 100.0 5E-30 1.1E-34 280.2 26.7 279 550-833 8-295 (794)
37 KOG0306 WD40-repeat-containing 100.0 1.8E-29 3.8E-34 281.1 30.6 308 506-834 77-577 (888)
38 KOG0306 WD40-repeat-containing 100.0 9.7E-30 2.1E-34 283.2 28.0 279 549-835 367-662 (888)
39 KOG0296 Angio-associated migra 100.0 2.4E-29 5.2E-34 261.1 27.2 283 547-835 56-354 (399)
40 KOG0643 Translation initiation 100.0 5.7E-29 1.2E-33 248.8 28.4 279 550-834 5-314 (327)
41 KOG0266 WD40 repeat-containing 100.0 7.2E-29 1.6E-33 285.1 31.9 278 497-796 162-454 (456)
42 KOG0276 Vesicle coat complex C 100.0 6.7E-29 1.4E-33 271.5 29.3 272 498-791 17-294 (794)
43 cd00200 WD40 WD40 domain, foun 100.0 7.8E-28 1.7E-32 252.9 36.0 265 506-794 21-289 (289)
44 KOG0278 Serine/threonine kinas 100.0 9.2E-30 2E-34 252.0 18.4 278 550-835 9-295 (334)
45 KOG0275 Conserved WD40 repeat- 100.0 4.3E-30 9.3E-35 261.6 16.5 278 553-835 211-507 (508)
46 KOG0281 Beta-TrCP (transducin 100.0 1.8E-30 3.8E-35 266.8 13.3 266 506-801 207-482 (499)
47 KOG0288 WD40 repeat protein Ti 100.0 1.7E-29 3.8E-34 265.5 17.2 280 548-835 168-459 (459)
48 KOG0265 U5 snRNP-specific prot 100.0 5.6E-28 1.2E-32 245.5 27.2 264 507-794 60-336 (338)
49 KOG1407 WD40 repeat protein [F 100.0 6.5E-28 1.4E-32 240.7 27.0 280 549-834 14-308 (313)
50 KOG1446 Histone H3 (Lys4) meth 100.0 3.9E-27 8.4E-32 241.8 33.3 282 546-834 5-300 (311)
51 KOG0292 Vesicle coat complex C 100.0 2.8E-28 6E-33 274.8 25.8 280 551-834 5-318 (1202)
52 KOG0645 WD40 repeat protein [G 100.0 3E-27 6.4E-32 237.2 29.8 268 506-796 27-311 (312)
53 KOG0285 Pleiotropic regulator 100.0 8.2E-28 1.8E-32 248.4 24.4 277 499-797 156-440 (460)
54 KOG0640 mRNA cleavage stimulat 100.0 6.2E-28 1.3E-32 245.2 22.7 286 546-835 103-424 (430)
55 KOG0313 Microtubule binding pr 100.0 2.9E-27 6.2E-32 246.7 26.7 276 553-835 103-416 (423)
56 PLN00181 protein SPA1-RELATED; 100.0 2.6E-26 5.7E-31 282.0 39.3 284 497-795 486-792 (793)
57 KOG0316 Conserved WD40 repeat- 100.0 3.3E-27 7.1E-32 232.3 24.5 266 500-790 23-294 (307)
58 KOG0313 Microtubule binding pr 100.0 5.8E-27 1.3E-31 244.4 27.0 268 504-796 113-418 (423)
59 KOG0277 Peroxisomal targeting 100.0 1.9E-27 4.1E-32 236.5 22.2 275 559-835 12-307 (311)
60 KOG0283 WD40 repeat-containing 100.0 3.2E-27 7E-32 268.6 26.2 246 545-796 256-576 (712)
61 KOG0282 mRNA splicing factor [ 100.0 5.4E-28 1.2E-32 259.0 18.6 274 497-794 217-503 (503)
62 KOG0268 Sof1-like rRNA process 100.0 2.5E-28 5.4E-33 253.0 15.4 278 547-835 58-343 (433)
63 KOG0310 Conserved WD40 repeat- 100.0 5.3E-27 1.1E-31 251.9 25.8 274 555-833 26-305 (487)
64 KOG0275 Conserved WD40 repeat- 100.0 8.1E-28 1.8E-32 245.0 17.0 271 507-794 226-507 (508)
65 KOG0772 Uncharacterized conser 100.0 5.6E-27 1.2E-31 251.8 24.3 289 544-834 156-484 (641)
66 KOG0293 WD40 repeat-containing 100.0 3.2E-27 6.9E-32 247.9 21.8 275 501-797 231-514 (519)
67 KOG0292 Vesicle coat complex C 100.0 2.1E-26 4.6E-31 259.7 29.3 271 501-796 16-321 (1202)
68 KOG0973 Histone transcription 100.0 1.9E-26 4.2E-31 268.0 29.5 279 552-834 10-352 (942)
69 KOG0274 Cdc4 and related F-box 100.0 2.8E-26 6.2E-31 264.0 30.5 268 553-835 206-480 (537)
70 PTZ00420 coronin; Provisional 100.0 2.4E-25 5.1E-30 257.3 37.4 247 573-819 50-318 (568)
71 KOG0278 Serine/threonine kinas 100.0 2.6E-27 5.6E-32 234.7 18.0 273 503-801 26-302 (334)
72 KOG0289 mRNA splicing factor [ 100.0 2.8E-26 6.1E-31 242.5 26.8 275 555-834 219-503 (506)
73 KOG0305 Anaphase promoting com 99.9 4.2E-26 9E-31 254.0 28.8 266 560-835 182-459 (484)
74 KOG0647 mRNA export protein (c 99.9 8.4E-26 1.8E-30 229.8 27.1 271 552-825 24-311 (347)
75 PTZ00421 coronin; Provisional 99.9 4E-25 8.7E-30 254.0 36.2 262 556-819 21-315 (493)
76 KOG0274 Cdc4 and related F-box 99.9 9.8E-26 2.1E-30 259.6 30.5 263 506-801 218-487 (537)
77 KOG0294 WD40 repeat-containing 99.9 3E-25 6.6E-30 226.9 27.9 292 509-816 4-306 (362)
78 KOG0973 Histone transcription 99.9 1.3E-25 2.9E-30 261.0 27.7 286 503-799 22-358 (942)
79 KOG0300 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 228.8 22.6 287 544-835 137-474 (481)
80 KOG0641 WD40 repeat protein [G 99.9 4.8E-24 1E-28 208.4 32.3 295 495-796 33-349 (350)
81 KOG0283 WD40 repeat-containing 99.9 1.5E-25 3.2E-30 255.1 25.1 241 589-835 258-574 (712)
82 KOG0310 Conserved WD40 repeat- 99.9 2.2E-25 4.8E-30 239.4 24.8 240 551-796 64-309 (487)
83 KOG0288 WD40 repeat protein Ti 99.9 2.2E-26 4.9E-31 242.1 16.4 264 505-793 186-458 (459)
84 KOG0308 Conserved WD40 repeat- 99.9 4.6E-26 1E-30 250.9 18.7 273 560-835 29-325 (735)
85 KOG0641 WD40 repeat protein [G 99.9 1.7E-23 3.7E-28 204.6 33.8 287 544-834 22-346 (350)
86 KOG1407 WD40 repeat protein [F 99.9 3.2E-25 6.9E-30 221.5 21.3 239 591-833 14-257 (313)
87 KOG2096 WD40 repeat protein [G 99.9 1.9E-24 4.1E-29 220.8 26.4 283 548-834 79-399 (420)
88 PTZ00421 coronin; Provisional 99.9 1.3E-23 2.8E-28 241.6 36.3 243 549-798 69-333 (493)
89 KOG0643 Translation initiation 99.9 7.4E-24 1.6E-28 212.3 27.8 273 502-796 18-317 (327)
90 KOG1036 Mitotic spindle checkp 99.9 5.1E-24 1.1E-28 217.8 27.0 270 553-827 11-294 (323)
91 KOG0640 mRNA cleavage stimulat 99.9 7.3E-25 1.6E-29 222.9 20.5 290 502-795 120-425 (430)
92 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.9E-23 1.5E-27 220.8 35.9 262 567-835 1-277 (300)
93 KOG0308 Conserved WD40 repeat- 99.9 8.4E-25 1.8E-29 241.0 20.7 315 504-835 35-391 (735)
94 KOG0301 Phospholipase A2-activ 99.9 6.5E-24 1.4E-28 235.7 27.2 274 545-834 4-285 (745)
95 KOG1539 WD repeat protein [Gen 99.9 7.6E-23 1.7E-27 231.1 35.5 307 508-834 174-645 (910)
96 KOG0277 Peroxisomal targeting 99.9 2.6E-24 5.5E-29 214.3 20.6 247 545-795 51-308 (311)
97 KOG0299 U3 snoRNP-associated p 99.9 1.1E-23 2.4E-28 224.8 26.1 278 548-831 135-450 (479)
98 KOG0299 U3 snoRNP-associated p 99.9 8.4E-24 1.8E-28 225.7 24.5 286 495-786 143-445 (479)
99 KOG0639 Transducin-like enhanc 99.9 1.3E-23 2.8E-28 225.0 25.1 275 553-834 417-701 (705)
100 KOG0772 Uncharacterized conser 99.9 6.7E-24 1.5E-28 228.3 23.0 283 493-793 166-484 (641)
101 KOG0305 Anaphase promoting com 99.9 1.7E-23 3.8E-28 233.1 26.8 237 555-798 217-463 (484)
102 PTZ00420 coronin; Provisional 99.9 8.3E-23 1.8E-27 236.2 33.4 227 547-778 66-318 (568)
103 KOG1408 WD40 repeat protein [F 99.9 1.8E-23 3.9E-28 231.3 25.5 314 505-835 335-711 (1080)
104 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.9E-22 1.7E-26 212.5 38.1 284 507-817 2-300 (300)
105 KOG0301 Phospholipase A2-activ 99.9 2.2E-23 4.7E-28 231.6 26.1 258 507-797 26-289 (745)
106 KOG1273 WD40 repeat protein [G 99.9 2.7E-23 5.8E-28 212.3 24.4 275 558-835 26-320 (405)
107 KOG0647 mRNA export protein (c 99.9 6.8E-23 1.5E-27 208.7 26.9 274 473-786 21-313 (347)
108 KOG0294 WD40 repeat-containing 99.9 5.4E-23 1.2E-27 210.5 26.1 257 570-835 4-279 (362)
109 KOG0289 mRNA splicing factor [ 99.9 5.6E-23 1.2E-27 217.6 25.5 269 506-795 231-505 (506)
110 KOG0268 Sof1-like rRNA process 99.9 6.3E-24 1.4E-28 220.5 16.0 265 507-799 80-348 (433)
111 KOG2055 WD40 repeat protein [G 99.9 8E-23 1.7E-27 218.1 24.5 281 554-835 212-510 (514)
112 KOG1063 RNA polymerase II elon 99.9 2.5E-22 5.4E-27 223.1 29.1 334 498-835 198-646 (764)
113 KOG0650 WD40 repeat nucleolar 99.9 7.7E-23 1.7E-27 223.5 24.1 289 541-834 386-732 (733)
114 KOG0264 Nucleosome remodeling 99.9 2.6E-22 5.6E-27 214.7 27.5 251 546-835 115-402 (422)
115 KOG1408 WD40 repeat protein [F 99.9 7.1E-23 1.5E-27 226.6 23.0 242 553-797 457-714 (1080)
116 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-21 2.3E-26 201.9 29.2 246 587-835 4-260 (311)
117 KOG1332 Vesicle coat complex C 99.9 6.8E-23 1.5E-27 203.2 18.6 246 551-796 7-286 (299)
118 KOG2106 Uncharacterized conser 99.9 2.2E-20 4.9E-25 200.9 36.2 294 536-835 226-624 (626)
119 KOG0269 WD40 repeat-containing 99.9 3E-22 6.4E-27 224.9 20.3 273 557-832 41-335 (839)
120 KOG1332 Vesicle coat complex C 99.9 2.6E-22 5.7E-27 199.0 17.6 241 594-835 8-284 (299)
121 KOG0646 WD40 repeat protein [G 99.9 5E-22 1.1E-26 212.6 21.0 238 555-795 81-349 (476)
122 KOG1274 WD40 repeat protein [G 99.9 4.2E-21 9.2E-26 219.4 28.6 274 552-833 10-296 (933)
123 KOG2445 Nuclear pore complex c 99.9 4E-21 8.8E-26 196.2 25.3 255 552-835 10-316 (361)
124 KOG0639 Transducin-like enhanc 99.9 2E-21 4.3E-26 208.3 24.1 234 555-795 465-703 (705)
125 KOG0267 Microtubule severing p 99.9 4.2E-23 9.1E-28 229.9 10.2 251 567-828 4-259 (825)
126 KOG1539 WD repeat protein [Gen 99.9 4.9E-20 1.1E-24 208.5 34.2 278 552-835 156-604 (910)
127 KOG0321 WD40 repeat-containing 99.9 1.4E-21 3E-26 215.4 21.1 274 560-835 54-389 (720)
128 KOG4283 Transcription-coupled 99.9 7.9E-21 1.7E-25 192.6 24.7 293 505-834 55-362 (397)
129 KOG0264 Nucleosome remodeling 99.9 3.8E-21 8.1E-26 205.9 23.4 249 502-797 133-405 (422)
130 KOG2055 WD40 repeat protein [G 99.9 4.4E-21 9.6E-26 204.8 23.6 286 473-796 207-512 (514)
131 KOG0267 Microtubule severing p 99.9 5.7E-23 1.2E-27 228.9 9.0 237 547-788 20-260 (825)
132 KOG2106 Uncharacterized conser 99.9 8.6E-20 1.9E-24 196.4 32.5 291 530-835 178-519 (626)
133 KOG1036 Mitotic spindle checkp 99.9 2.1E-20 4.6E-25 191.5 26.4 268 475-787 9-295 (323)
134 KOG1274 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 214.9 27.0 236 594-835 10-260 (933)
135 KOG0300 WD40 repeat-containing 99.9 5.7E-21 1.2E-25 194.9 20.5 256 569-835 126-426 (481)
136 KOG0646 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 201.9 24.2 256 573-835 13-305 (476)
137 KOG2048 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 201.8 32.6 277 548-833 18-315 (691)
138 KOG0321 WD40 repeat-containing 99.9 1.3E-20 2.8E-25 207.9 23.1 280 503-798 61-393 (720)
139 KOG1063 RNA polymerase II elon 99.9 1.4E-19 3E-24 201.4 27.2 312 506-835 159-600 (764)
140 KOG1034 Transcriptional repres 99.9 5.4E-20 1.2E-24 189.4 21.9 283 549-835 32-381 (385)
141 KOG2048 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 192.9 32.4 276 499-797 30-320 (691)
142 KOG4328 WD40 protein [Function 99.8 2.1E-19 4.5E-24 192.1 24.2 292 542-834 173-492 (498)
143 KOG0269 WD40 repeat-containing 99.8 1.2E-20 2.6E-25 212.0 15.1 232 505-753 99-342 (839)
144 KOG1009 Chromatin assembly com 99.8 3.5E-19 7.7E-24 188.1 24.9 295 508-833 28-368 (434)
145 COG2319 FOG: WD40 repeat [Gene 99.8 2.7E-17 5.9E-22 181.3 41.4 312 501-835 72-398 (466)
146 KOG1538 Uncharacterized conser 99.8 2E-19 4.3E-24 198.1 23.2 269 557-835 14-291 (1081)
147 KOG1273 WD40 repeat protein [G 99.8 2.8E-19 6E-24 183.1 22.1 268 504-796 33-322 (405)
148 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-19 5.7E-24 192.1 22.8 254 558-819 37-305 (673)
149 KOG0307 Vesicle coat complex C 99.8 2E-20 4.4E-25 218.8 15.5 241 556-799 65-330 (1049)
150 KOG2919 Guanine nucleotide-bin 99.8 4.6E-19 1E-23 182.1 22.5 266 558-828 52-361 (406)
151 KOG0270 WD40 repeat-containing 99.8 2.6E-19 5.7E-24 190.8 21.2 233 567-801 192-454 (463)
152 COG2319 FOG: WD40 repeat [Gene 99.8 6.2E-17 1.4E-21 178.5 40.9 283 545-835 145-440 (466)
153 KOG4283 Transcription-coupled 99.8 4.8E-19 1E-23 179.8 21.2 206 594-799 40-279 (397)
154 KOG1445 Tumor-specific antigen 99.8 7.6E-19 1.6E-23 192.6 23.6 114 722-835 627-748 (1012)
155 KOG0307 Vesicle coat complex C 99.8 4E-20 8.7E-25 216.4 13.1 272 560-834 11-324 (1049)
156 KOG2096 WD40 repeat protein [G 99.8 1.3E-18 2.8E-23 178.4 22.4 241 591-834 80-357 (420)
157 KOG0302 Ribosome Assembly prot 99.8 7.6E-19 1.6E-23 183.8 20.7 241 552-793 148-435 (440)
158 KOG4328 WD40 protein [Function 99.8 8.3E-19 1.8E-23 187.5 20.3 254 582-835 171-448 (498)
159 KOG4227 WD40 repeat protein [G 99.8 1.4E-18 3E-23 181.7 21.1 283 548-835 49-385 (609)
160 KOG4378 Nuclear protein COP1 [ 99.8 9.5E-19 2.1E-23 187.8 19.8 218 557-778 81-305 (673)
161 KOG0270 WD40 repeat-containing 99.8 1.7E-18 3.6E-23 184.8 19.8 250 503-753 189-451 (463)
162 KOG2445 Nuclear pore complex c 99.8 2.5E-17 5.5E-22 168.6 26.6 268 499-816 18-341 (361)
163 KOG0650 WD40 repeat nucleolar 99.8 2.9E-18 6.4E-23 188.0 20.3 241 589-834 392-677 (733)
164 KOG0322 G-protein beta subunit 99.8 1E-18 2.2E-23 175.4 14.8 283 547-835 6-321 (323)
165 KOG0302 Ribosome Assembly prot 99.8 1E-17 2.2E-22 175.4 21.7 236 594-830 148-432 (440)
166 PRK11028 6-phosphogluconolacto 99.8 7.1E-16 1.5E-20 170.5 36.5 287 509-815 5-327 (330)
167 KOG0642 Cell-cycle nuclear pro 99.8 2E-18 4.4E-23 188.9 15.5 257 545-806 284-572 (577)
168 PRK11028 6-phosphogluconolacto 99.8 3E-16 6.6E-21 173.4 33.2 264 570-835 5-302 (330)
169 KOG1188 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 173.3 18.4 264 568-835 41-344 (376)
170 KOG0642 Cell-cycle nuclear pro 99.8 8.7E-18 1.9E-22 184.0 17.4 255 497-765 297-572 (577)
171 KOG0644 Uncharacterized conser 99.8 2E-18 4.2E-23 194.9 11.2 272 547-834 182-465 (1113)
172 KOG2919 Guanine nucleotide-bin 99.8 2.1E-16 4.6E-21 162.7 24.4 272 507-787 62-361 (406)
173 KOG0303 Actin-binding protein 99.7 1.6E-16 3.4E-21 167.4 23.0 226 592-818 76-320 (472)
174 KOG1007 WD repeat protein TSSC 99.7 2.2E-16 4.7E-21 160.4 22.7 261 569-833 28-357 (370)
175 KOG1334 WD40 repeat protein [G 99.7 1.1E-17 2.4E-22 180.0 12.8 289 546-834 133-463 (559)
176 KOG1034 Transcriptional repres 99.7 2.1E-16 4.5E-21 163.2 20.1 240 553-796 87-383 (385)
177 KOG1517 Guanine nucleotide bin 99.7 5.8E-16 1.3E-20 179.0 25.1 278 555-835 1064-1379(1387)
178 KOG0290 Conserved WD40 repeat- 99.7 5.9E-16 1.3E-20 157.5 22.0 239 552-793 93-362 (364)
179 KOG1587 Cytoplasmic dynein int 99.7 1.7E-15 3.8E-20 173.8 27.5 256 577-835 222-514 (555)
180 KOG0303 Actin-binding protein 99.7 4.1E-16 8.9E-21 164.2 19.7 202 548-754 74-297 (472)
181 KOG1240 Protein kinase contain 99.7 2.5E-15 5.4E-20 176.5 26.7 289 544-835 1037-1431(1431)
182 KOG0649 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 146.9 25.3 266 557-834 12-313 (325)
183 KOG1188 WD40 repeat protein [G 99.7 7E-16 1.5E-20 160.2 18.7 272 505-796 39-346 (376)
184 KOG0649 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 147.3 23.0 227 599-834 12-271 (325)
185 KOG1963 WD40 repeat protein [G 99.7 9.8E-15 2.1E-19 167.7 28.4 280 552-835 202-536 (792)
186 PRK01742 tolB translocation pr 99.7 7.7E-15 1.7E-19 168.1 26.0 231 576-818 183-426 (429)
187 KOG1538 Uncharacterized conser 99.7 3.8E-15 8.3E-20 164.7 21.9 238 547-796 45-293 (1081)
188 KOG2110 Uncharacterized conser 99.7 1.7E-13 3.8E-18 144.0 31.2 231 555-797 5-249 (391)
189 KOG1524 WD40 repeat-containing 99.7 3.6E-15 7.9E-20 161.8 19.2 260 553-833 12-282 (737)
190 PF02239 Cytochrom_D1: Cytochr 99.7 1.6E-13 3.4E-18 153.3 32.3 284 546-835 27-345 (369)
191 KOG4227 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 150.6 23.5 282 499-795 61-386 (609)
192 KOG1523 Actin-related protein 99.6 2.1E-14 4.5E-19 148.3 22.8 280 553-835 8-360 (361)
193 KOG1587 Cytoplasmic dynein int 99.6 8.2E-15 1.8E-19 168.3 22.2 244 554-798 241-518 (555)
194 KOG1310 WD40 repeat protein [G 99.6 1.4E-15 3.1E-20 165.4 14.9 236 546-801 41-308 (758)
195 KOG2110 Uncharacterized conser 99.6 7.6E-14 1.7E-18 146.7 26.2 228 597-835 5-246 (391)
196 PRK01742 tolB translocation pr 99.6 1.6E-14 3.5E-19 165.5 23.3 220 549-777 197-426 (429)
197 KOG0290 Conserved WD40 repeat- 99.6 4.8E-14 1E-18 143.7 23.5 281 547-833 37-361 (364)
198 KOG2321 WD40 repeat protein [G 99.6 5E-14 1.1E-18 154.5 24.8 275 553-834 49-340 (703)
199 PRK03629 tolB translocation pr 99.6 1.6E-13 3.5E-18 157.1 30.1 232 577-817 179-427 (429)
200 KOG1272 WD40-repeat-containing 99.6 9.7E-16 2.1E-20 164.3 10.8 260 558-829 132-401 (545)
201 KOG1963 WD40 repeat protein [G 99.6 1.6E-13 3.5E-18 157.9 29.0 273 558-834 19-319 (792)
202 KOG0644 Uncharacterized conser 99.6 7.2E-16 1.6E-20 174.5 9.5 271 499-799 195-471 (1113)
203 KOG1007 WD repeat protein TSSC 99.6 4.3E-14 9.4E-19 143.8 21.1 246 548-796 56-361 (370)
204 KOG2139 WD40 repeat protein [G 99.6 1.8E-13 3.9E-18 143.2 25.4 275 556-834 99-428 (445)
205 KOG1517 Guanine nucleotide bin 99.6 8.3E-14 1.8E-18 161.4 23.6 283 500-799 1070-1384(1387)
206 PRK04922 tolB translocation pr 99.6 2.9E-13 6.2E-18 155.4 27.2 232 577-817 184-432 (433)
207 KOG2394 WD40 protein DMR-N9 [G 99.6 9.3E-14 2E-18 151.6 20.4 243 557-816 125-383 (636)
208 KOG0771 Prolactin regulatory e 99.6 3E-14 6.4E-19 152.2 16.3 192 559-752 148-355 (398)
209 PRK05137 tolB translocation pr 99.6 8.3E-13 1.8E-17 151.7 29.3 231 577-817 182-432 (435)
210 KOG2111 Uncharacterized conser 99.6 3.3E-12 7.2E-17 132.2 29.9 266 557-832 7-317 (346)
211 KOG4497 Uncharacterized conser 99.6 6.8E-13 1.5E-17 137.2 24.8 269 556-830 49-425 (447)
212 KOG4497 Uncharacterized conser 99.6 1.7E-13 3.6E-18 141.7 20.1 271 560-834 13-388 (447)
213 PF10282 Lactonase: Lactonase, 99.6 4.5E-11 9.7E-16 133.1 41.2 260 556-815 37-345 (345)
214 KOG1445 Tumor-specific antigen 99.6 2E-13 4.3E-18 150.6 21.2 235 564-800 588-848 (1012)
215 KOG1009 Chromatin assembly com 99.6 5.5E-13 1.2E-17 141.6 23.6 290 487-800 58-376 (434)
216 KOG3881 Uncharacterized conser 99.6 3E-13 6.5E-18 143.1 21.2 259 554-818 54-342 (412)
217 KOG1524 WD40 repeat-containing 99.6 6.8E-14 1.5E-18 152.1 16.3 205 568-793 76-283 (737)
218 PRK02889 tolB translocation pr 99.6 1.3E-12 2.9E-17 149.6 27.8 233 577-818 176-425 (427)
219 PRK03629 tolB translocation pr 99.5 5.8E-12 1.2E-16 144.3 32.0 203 620-830 180-396 (429)
220 KOG1523 Actin-related protein 99.5 9.4E-13 2E-17 136.2 21.8 223 595-818 8-260 (361)
221 PF10282 Lactonase: Lactonase, 99.5 6.3E-11 1.4E-15 131.9 38.1 265 570-835 2-320 (345)
222 KOG0771 Prolactin regulatory e 99.5 7.9E-13 1.7E-17 141.5 21.1 189 644-834 148-351 (398)
223 KOG2315 Predicted translation 99.5 4.1E-12 9E-17 140.0 27.0 268 556-835 35-388 (566)
224 PRK02889 tolB translocation pr 99.5 4.3E-12 9.3E-17 145.4 27.9 220 551-777 191-425 (427)
225 KOG2111 Uncharacterized conser 99.5 6.5E-12 1.4E-16 130.0 24.9 229 599-834 7-253 (346)
226 PRK04922 tolB translocation pr 99.5 3.4E-12 7.3E-17 146.6 25.4 218 550-776 198-432 (433)
227 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-12 4.3E-17 141.3 20.9 167 565-732 183-384 (636)
228 PF02239 Cytochrom_D1: Cytochr 99.5 3.3E-11 7.2E-16 134.7 31.4 259 570-835 9-300 (369)
229 TIGR02800 propeller_TolB tol-p 99.5 1.3E-11 2.8E-16 140.9 28.7 230 577-815 170-416 (417)
230 KOG1240 Protein kinase contain 99.5 4.7E-12 1E-16 149.4 24.2 249 582-835 1034-1332(1431)
231 PRK05137 tolB translocation pr 99.5 1.7E-11 3.7E-16 140.8 28.3 201 619-827 182-396 (435)
232 PRK00178 tolB translocation pr 99.5 2.8E-11 6.1E-16 138.9 29.6 231 578-817 180-427 (430)
233 KOG1354 Serine/threonine prote 99.5 7E-12 1.5E-16 130.6 21.8 276 554-834 24-431 (433)
234 KOG1272 WD40-repeat-containing 99.5 1.3E-13 2.7E-18 148.3 8.8 227 598-835 130-360 (545)
235 KOG3881 Uncharacterized conser 99.5 5E-12 1.1E-16 134.0 20.5 234 597-835 55-318 (412)
236 KOG0322 G-protein beta subunit 99.4 2.8E-12 6.1E-17 129.4 16.3 262 507-795 26-322 (323)
237 COG5354 Uncharacterized protei 99.4 1.1E-10 2.4E-15 127.4 28.8 271 556-835 72-393 (561)
238 KOG1409 Uncharacterized conser 99.4 7.5E-12 1.6E-16 130.5 18.5 249 543-796 12-270 (404)
239 PRK04792 tolB translocation pr 99.4 5.5E-11 1.2E-15 136.9 27.8 231 578-817 199-446 (448)
240 KOG1334 WD40 repeat protein [G 99.4 1.6E-12 3.5E-17 140.6 14.0 279 499-798 147-468 (559)
241 KOG2321 WD40 repeat protein [G 99.4 1.2E-11 2.6E-16 136.1 20.9 237 595-835 49-300 (703)
242 KOG2139 WD40 repeat protein [G 99.4 6.5E-11 1.4E-15 124.3 24.7 229 547-795 188-430 (445)
243 KOG4594 Sequence-specific sing 99.4 2.2E-13 4.8E-18 137.5 4.8 77 4-81 12-92 (354)
244 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.1E-09 2.4E-14 120.2 33.4 256 577-835 27-328 (352)
245 KOG1310 WD40 repeat protein [G 99.4 3.7E-12 8E-17 139.1 13.5 164 589-752 42-232 (758)
246 PF08662 eIF2A: Eukaryotic tra 99.4 3.9E-11 8.5E-16 122.3 20.2 108 721-835 58-177 (194)
247 COG2706 3-carboxymuconate cycl 99.4 4.1E-09 8.8E-14 111.9 35.4 264 553-816 37-345 (346)
248 PRK01029 tolB translocation pr 99.3 5.2E-10 1.1E-14 127.9 29.6 236 577-819 165-426 (428)
249 PRK00178 tolB translocation pr 99.3 2.9E-10 6.3E-15 130.5 27.1 220 549-777 192-428 (430)
250 PRK04792 tolB translocation pr 99.3 2.7E-10 5.8E-15 131.2 26.1 218 551-777 213-447 (448)
251 KOG0974 WD-repeat protein WDR6 99.3 3.9E-11 8.4E-16 140.6 18.5 262 556-835 8-286 (967)
252 TIGR02800 propeller_TolB tol-p 99.3 5.7E-10 1.2E-14 127.3 27.6 203 619-829 170-386 (417)
253 PF08662 eIF2A: Eukaryotic tra 99.3 1.6E-10 3.5E-15 117.8 19.9 149 601-752 9-180 (194)
254 PRK01029 tolB translocation pr 99.3 8.3E-10 1.8E-14 126.3 27.4 213 619-835 165-401 (428)
255 KOG4547 WD40 repeat-containing 99.3 5.1E-10 1.1E-14 124.6 24.5 202 565-769 3-239 (541)
256 TIGR03300 assembly_YfgL outer 99.3 5.5E-09 1.2E-13 117.8 33.5 252 566-835 104-377 (377)
257 KOG2314 Translation initiation 99.3 9.9E-10 2.1E-14 120.8 24.9 269 554-829 249-559 (698)
258 COG2706 3-carboxymuconate cycl 99.3 9.7E-09 2.1E-13 109.0 31.0 258 576-834 15-318 (346)
259 TIGR02658 TTQ_MADH_Hv methylam 99.2 5.1E-08 1.1E-12 107.2 36.4 232 563-804 53-338 (352)
260 KOG2041 WD40 repeat protein [G 99.2 1.2E-09 2.6E-14 122.6 23.3 274 554-833 13-333 (1189)
261 KOG2315 Predicted translation 99.2 4.8E-09 1E-13 116.2 27.1 213 596-817 164-410 (566)
262 KOG4190 Uncharacterized conser 99.2 7.5E-11 1.6E-15 128.6 12.4 279 546-833 726-1032(1034)
263 KOG1354 Serine/threonine prote 99.2 1.1E-09 2.3E-14 114.6 19.4 237 501-753 32-361 (433)
264 KOG0974 WD-repeat protein WDR6 99.2 1.3E-09 2.9E-14 128.0 21.9 145 505-673 144-290 (967)
265 KOG0280 Uncharacterized conser 99.2 9.7E-10 2.1E-14 113.0 17.1 197 557-753 123-335 (339)
266 TIGR03300 assembly_YfgL outer 99.2 3.5E-08 7.6E-13 111.3 30.9 250 567-835 65-336 (377)
267 COG5354 Uncharacterized protei 99.1 6.8E-09 1.5E-13 113.7 23.6 269 554-835 31-346 (561)
268 KOG2314 Translation initiation 99.1 1.2E-08 2.5E-13 112.6 25.5 268 559-835 214-523 (698)
269 KOG4547 WD40 repeat-containing 99.1 5.2E-09 1.1E-13 116.7 22.2 187 607-797 3-221 (541)
270 PLN02919 haloacid dehalogenase 99.1 5.5E-08 1.2E-12 122.3 33.9 235 559-800 571-892 (1057)
271 PRK04043 tolB translocation pr 99.1 6.1E-08 1.3E-12 110.5 30.9 226 577-814 169-418 (419)
272 PLN02919 haloacid dehalogenase 99.1 4.5E-08 9.8E-13 123.0 31.8 231 601-835 571-886 (1057)
273 COG4946 Uncharacterized protei 99.1 8.8E-08 1.9E-12 104.0 29.0 282 532-826 204-507 (668)
274 KOG0309 Conserved WD40 repeat- 99.1 9.1E-10 2E-14 124.2 14.5 276 555-834 24-336 (1081)
275 COG5170 CDC55 Serine/threonine 99.1 3E-09 6.5E-14 109.7 15.9 238 554-795 25-366 (460)
276 PF04762 IKI3: IKI3 family; I 99.1 3.4E-07 7.4E-12 113.2 36.5 279 553-835 73-454 (928)
277 KOG1912 WD40 repeat protein [G 99.0 9.2E-08 2E-12 109.1 27.5 210 542-752 42-305 (1062)
278 KOG1064 RAVE (regulator of V-A 99.0 8.9E-10 1.9E-14 134.3 12.0 188 503-719 2217-2407(2439)
279 PRK04043 tolB translocation pr 99.0 7.3E-08 1.6E-12 109.8 27.2 191 557-752 189-401 (419)
280 KOG2041 WD40 repeat protein [G 99.0 1.2E-07 2.7E-12 106.9 25.8 304 506-831 26-402 (1189)
281 KOG1064 RAVE (regulator of V-A 99.0 2.8E-09 6.1E-14 130.0 12.1 208 609-835 2180-2396(2439)
282 KOG1409 Uncharacterized conser 99.0 1.6E-08 3.4E-13 106.1 15.7 243 588-835 15-268 (404)
283 COG4946 Uncharacterized protei 99.0 8E-07 1.7E-11 96.7 29.0 169 566-741 331-507 (668)
284 KOG3914 WD repeat protein WDR4 98.9 9.3E-09 2E-13 110.1 14.1 163 502-680 70-232 (390)
285 KOG0280 Uncharacterized conser 98.9 1E-07 2.2E-12 98.4 19.7 240 555-795 69-332 (339)
286 PF08450 SGL: SMP-30/Gluconola 98.9 5.1E-06 1.1E-10 87.9 33.7 217 559-786 3-245 (246)
287 PF08450 SGL: SMP-30/Gluconola 98.9 3.3E-06 7.2E-11 89.3 31.9 213 602-824 4-242 (246)
288 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.6E-11 91.7 27.1 214 576-801 2-235 (238)
289 PRK11138 outer membrane biogen 98.9 1.4E-06 2.9E-11 99.1 29.5 253 567-835 120-392 (394)
290 KOG1832 HIV-1 Vpr-binding prot 98.9 2.5E-09 5.4E-14 122.5 6.1 263 544-826 1090-1378(1516)
291 KOG1912 WD40 repeat protein [G 98.8 2E-07 4.4E-12 106.3 21.0 238 554-797 14-305 (1062)
292 KOG0882 Cyclophilin-related pe 98.8 9.3E-09 2E-13 110.9 9.4 272 504-806 18-315 (558)
293 PF07433 DUF1513: Protein of u 98.8 3.1E-06 6.8E-11 90.3 28.4 242 558-827 7-276 (305)
294 KOG4532 WD40-like repeat conta 98.8 5.8E-07 1.3E-11 91.7 21.6 220 608-827 83-322 (344)
295 PF04762 IKI3: IKI3 family; I 98.8 2.4E-06 5.2E-11 105.9 31.6 274 556-834 22-376 (928)
296 KOG4190 Uncharacterized conser 98.8 1.1E-08 2.4E-13 112.0 9.5 205 590-801 728-953 (1034)
297 KOG0309 Conserved WD40 repeat- 98.7 3E-08 6.6E-13 112.2 9.9 205 548-752 107-340 (1081)
298 PRK11138 outer membrane biogen 98.7 2.9E-06 6.4E-11 96.3 25.0 253 567-835 69-351 (394)
299 PF00930 DPPIV_N: Dipeptidyl p 98.7 1E-05 2.2E-10 90.6 28.1 257 564-826 1-346 (353)
300 KOG4532 WD40-like repeat conta 98.7 3.6E-06 7.7E-11 86.1 21.5 229 567-800 84-335 (344)
301 KOG4714 Nucleoporin [Nuclear s 98.6 4.6E-07 1E-11 92.1 14.2 199 505-711 46-255 (319)
302 COG5170 CDC55 Serine/threonine 98.6 2.4E-07 5.2E-12 95.9 12.3 234 596-835 25-307 (460)
303 PF15492 Nbas_N: Neuroblastoma 98.6 1.8E-05 4E-10 82.3 25.6 225 561-801 3-264 (282)
304 KOG1645 RING-finger-containing 98.6 1.8E-06 4E-11 92.6 18.6 249 579-835 175-459 (463)
305 PF13360 PQQ_2: PQQ-like domai 98.6 1.1E-05 2.5E-10 84.2 24.5 209 618-835 2-228 (238)
306 KOG1832 HIV-1 Vpr-binding prot 98.6 3E-08 6.6E-13 113.9 3.7 200 587-801 1091-1296(1516)
307 KOG1920 IkappaB kinase complex 98.6 1.3E-05 2.8E-10 96.6 25.1 242 555-801 68-327 (1265)
308 PF15492 Nbas_N: Neuroblastoma 98.5 5.3E-05 1.1E-09 78.9 25.9 187 558-753 46-261 (282)
309 KOG4714 Nucleoporin [Nuclear s 98.5 1.1E-06 2.5E-11 89.3 13.0 238 558-835 39-316 (319)
310 KOG1645 RING-finger-containing 98.5 3.4E-06 7.4E-11 90.6 16.7 244 546-796 184-461 (463)
311 PF04053 Coatomer_WDAD: Coatom 98.5 1.1E-05 2.5E-10 91.9 22.1 222 595-834 30-259 (443)
312 PRK02888 nitrous-oxide reducta 98.5 2.3E-05 5.1E-10 90.7 24.3 255 565-826 139-450 (635)
313 KOG3914 WD repeat protein WDR4 98.5 1.9E-06 4.1E-11 92.7 14.3 157 558-719 65-232 (390)
314 PF06433 Me-amine-dh_H: Methyl 98.5 0.00011 2.4E-09 79.4 27.8 256 577-835 17-318 (342)
315 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00024 5.2E-09 72.8 28.0 256 566-835 62-349 (354)
316 cd00216 PQQ_DH Dehydrogenases 98.5 6.3E-05 1.4E-09 87.9 27.6 256 567-835 61-422 (488)
317 PF08513 LisH: LisH; InterPro 98.4 2E-07 4.3E-12 62.6 3.7 27 10-36 1-27 (27)
318 KOG1275 PAB-dependent poly(A) 98.4 5.8E-06 1.2E-10 96.5 17.3 260 483-750 45-341 (1118)
319 KOG1275 PAB-dependent poly(A) 98.4 6.7E-06 1.5E-10 96.0 17.7 175 655-835 149-340 (1118)
320 PF02897 Peptidase_S9_N: Proly 98.4 0.00071 1.5E-08 77.4 32.9 241 558-803 126-411 (414)
321 COG3391 Uncharacterized conser 98.4 0.00049 1.1E-08 77.8 30.9 248 579-833 13-279 (381)
322 PF14583 Pectate_lyase22: Olig 98.3 0.0011 2.4E-08 73.1 31.4 266 562-834 42-378 (386)
323 KOG2114 Vacuolar assembly/sort 98.3 9.1E-05 2E-09 86.6 23.8 205 604-813 30-262 (933)
324 KOG0882 Cyclophilin-related pe 98.3 2.6E-06 5.6E-11 92.5 10.3 205 595-801 7-236 (558)
325 PRK02888 nitrous-oxide reducta 98.3 0.00013 2.9E-09 84.6 24.7 182 648-835 200-402 (635)
326 KOG2695 WD40 repeat protein [G 98.3 1.7E-06 3.6E-11 91.2 8.3 159 657-816 228-401 (425)
327 KOG2695 WD40 repeat protein [G 98.3 2.1E-06 4.5E-11 90.5 8.9 157 560-720 216-386 (425)
328 KOG2066 Vacuolar assembly/sort 98.3 2.2E-05 4.8E-10 91.0 17.9 180 597-796 39-233 (846)
329 PF11768 DUF3312: Protein of u 98.3 0.00077 1.7E-08 76.7 29.8 90 744-835 237-327 (545)
330 KOG2066 Vacuolar assembly/sort 98.3 1.8E-05 3.9E-10 91.7 17.2 181 555-752 39-234 (846)
331 cd00216 PQQ_DH Dehydrogenases 98.3 0.00055 1.2E-08 80.0 30.0 224 568-801 111-429 (488)
332 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00053 1.1E-08 70.4 25.3 142 567-712 23-167 (354)
333 PF00400 WD40: WD domain, G-be 98.3 3.6E-06 7.8E-11 61.8 7.2 38 546-583 2-39 (39)
334 PF07433 DUF1513: Protein of u 98.3 0.00024 5.3E-09 76.1 23.6 191 642-835 6-245 (305)
335 PF00400 WD40: WD domain, G-be 98.2 3.9E-06 8.3E-11 61.6 6.5 39 587-625 1-39 (39)
336 KOG3621 WD40 repeat-containing 98.2 0.00018 3.9E-09 82.7 22.2 272 554-833 32-349 (726)
337 KOG3617 WD40 and TPR repeat-co 98.2 4.1E-05 9E-10 88.5 17.1 227 558-787 62-376 (1416)
338 KOG2114 Vacuolar assembly/sort 98.1 0.0004 8.7E-09 81.4 24.0 190 562-753 30-245 (933)
339 KOG1920 IkappaB kinase complex 98.1 0.00039 8.4E-09 84.3 24.4 227 596-834 67-319 (1265)
340 KOG3617 WD40 and TPR repeat-co 98.1 4.7E-05 1E-09 88.1 15.7 259 559-835 19-331 (1416)
341 COG0823 TolB Periplasmic compo 98.1 0.00033 7.2E-09 79.8 21.9 186 633-823 185-385 (425)
342 PF06433 Me-amine-dh_H: Methyl 98.1 0.0021 4.6E-08 69.7 26.8 236 560-804 40-328 (342)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0028 6.1E-08 74.6 30.2 184 567-754 69-336 (527)
344 PF04053 Coatomer_WDAD: Coatom 98.1 0.00051 1.1E-08 78.5 23.3 220 553-796 30-262 (443)
345 COG0823 TolB Periplasmic compo 98.1 0.00037 8.1E-09 79.4 21.7 195 587-788 182-391 (425)
346 COG3391 Uncharacterized conser 98.1 0.0012 2.5E-08 74.8 25.6 218 558-778 76-310 (381)
347 PF08596 Lgl_C: Lethal giant l 98.1 0.00084 1.8E-08 75.8 24.2 258 557-827 3-326 (395)
348 PF06977 SdiA-regulated: SdiA- 98.0 0.0031 6.8E-08 66.5 26.4 198 548-748 14-247 (248)
349 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.002 4.3E-08 72.2 25.9 227 555-786 42-347 (353)
350 KOG3621 WD40 repeat-containing 97.9 0.00056 1.2E-08 78.8 19.7 149 502-672 41-198 (726)
351 PF08596 Lgl_C: Lethal giant l 97.9 0.00066 1.4E-08 76.6 20.3 228 544-794 75-336 (395)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.023 4.9E-07 67.1 33.4 146 568-715 121-338 (527)
353 PF00780 CNH: CNH domain; Int 97.9 0.0079 1.7E-07 64.5 27.1 223 565-803 5-262 (275)
354 PF03178 CPSF_A: CPSF A subuni 97.9 0.0017 3.7E-08 71.6 21.8 209 620-833 3-261 (321)
355 KOG1008 Uncharacterized conser 97.8 8E-06 1.7E-10 92.3 2.3 197 555-752 56-276 (783)
356 PF06977 SdiA-regulated: SdiA- 97.8 0.0051 1.1E-07 64.9 23.0 197 635-834 16-247 (248)
357 PF14583 Pectate_lyase22: Olig 97.8 0.04 8.6E-07 61.1 30.3 267 504-793 46-378 (386)
358 PF03178 CPSF_A: CPSF A subuni 97.8 0.011 2.3E-07 65.3 26.5 212 577-793 2-262 (321)
359 KOG1008 Uncharacterized conser 97.8 8.4E-06 1.8E-10 92.1 1.6 196 598-796 57-275 (783)
360 PF11768 DUF3312: Protein of u 97.8 0.0028 6.1E-08 72.2 21.5 112 640-753 205-331 (545)
361 PF04841 Vps16_N: Vps16, N-ter 97.8 0.031 6.6E-07 63.9 30.3 190 578-779 62-272 (410)
362 PF00780 CNH: CNH domain; Int 97.7 0.011 2.3E-07 63.5 25.0 214 607-835 5-253 (275)
363 COG3386 Gluconolactonase [Carb 97.6 0.02 4.3E-07 62.5 24.7 217 603-827 30-276 (307)
364 PF02897 Peptidase_S9_N: Proly 97.6 0.033 7.2E-07 63.6 27.8 219 599-820 125-383 (414)
365 COG3386 Gluconolactonase [Carb 97.6 0.025 5.4E-07 61.8 24.4 219 560-788 29-277 (307)
366 KOG1897 Damage-specific DNA bi 97.5 0.16 3.4E-06 61.3 31.9 270 556-833 584-894 (1096)
367 PF05694 SBP56: 56kDa selenium 97.5 0.036 7.9E-07 61.9 24.6 219 566-786 86-393 (461)
368 PRK10115 protease 2; Provision 97.5 0.2 4.3E-06 61.1 33.3 236 558-801 129-399 (686)
369 PRK13616 lipoprotein LpqB; Pro 97.5 0.013 2.8E-07 69.7 22.5 210 576-792 328-564 (591)
370 PF08553 VID27: VID27 cytoplas 97.4 0.018 4E-07 69.6 23.4 140 609-751 493-647 (794)
371 PF04841 Vps16_N: Vps16, N-ter 97.4 0.04 8.8E-07 62.9 25.0 188 620-820 62-272 (410)
372 KOG4640 Anaphase-promoting com 97.4 0.00072 1.6E-08 77.0 10.0 95 555-650 20-115 (665)
373 COG3490 Uncharacterized protei 97.3 0.025 5.5E-07 59.2 19.2 228 560-794 72-346 (366)
374 PRK13616 lipoprotein LpqB; Pro 97.2 0.045 9.7E-07 65.2 22.8 185 641-832 350-563 (591)
375 PF15390 DUF4613: Domain of un 97.2 0.14 3E-06 58.8 25.1 118 556-673 57-188 (671)
376 KOG4499 Ca2+-binding protein R 97.1 0.11 2.4E-06 53.1 20.9 207 609-818 27-264 (310)
377 PF05096 Glu_cyclase_2: Glutam 97.1 0.39 8.5E-06 50.8 25.9 192 588-787 34-251 (264)
378 COG5276 Uncharacterized conser 97.1 0.57 1.2E-05 49.7 32.1 267 556-835 87-367 (370)
379 KOG2395 Protein involved in va 97.1 0.016 3.4E-07 65.2 15.8 134 692-828 345-492 (644)
380 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.91 2E-05 51.7 31.3 258 567-833 37-356 (418)
381 smart00667 LisH Lissencephaly 97.0 0.00094 2E-08 47.2 4.2 31 9-39 3-33 (34)
382 PHA02713 hypothetical protein; 97.0 0.038 8.3E-07 65.7 19.9 214 578-802 273-539 (557)
383 PRK10115 protease 2; Provision 97.0 0.48 1E-05 57.8 29.6 198 598-803 127-353 (686)
384 KOG1897 Damage-specific DNA bi 97.0 1.3 2.7E-05 54.0 31.4 269 555-833 629-938 (1096)
385 PF08553 VID27: VID27 cytoplas 97.0 0.012 2.5E-07 71.2 15.0 131 700-833 502-643 (794)
386 smart00320 WD40 WD40 repeats. 97.0 0.002 4.4E-08 44.7 5.5 37 547-583 4-40 (40)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.27 5.9E-06 55.7 24.7 88 560-649 6-117 (415)
388 smart00320 WD40 WD40 repeats. 96.9 0.0027 5.9E-08 44.0 5.9 39 587-625 2-40 (40)
389 KOG4441 Proteins containing BT 96.9 0.052 1.1E-06 64.6 19.5 229 566-802 284-552 (571)
390 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.037 8E-07 50.5 13.5 101 558-666 2-109 (111)
391 KOG4441 Proteins containing BT 96.8 0.05 1.1E-06 64.7 18.7 206 619-830 301-534 (571)
392 PF10647 Gmad1: Lipoprotein Lp 96.8 0.37 8.1E-06 51.3 23.3 189 642-831 25-231 (253)
393 PRK13684 Ycf48-like protein; P 96.8 1.3 2.8E-05 49.2 28.4 268 555-835 45-329 (334)
394 PF14870 PSII_BNR: Photosynthe 96.7 1.1 2.4E-05 48.8 26.2 266 554-834 15-301 (302)
395 COG3204 Uncharacterized protei 96.7 0.45 9.7E-06 50.6 21.9 160 551-711 81-264 (316)
396 KOG4640 Anaphase-promoting com 96.6 0.0078 1.7E-07 68.9 9.3 92 680-775 20-114 (665)
397 PHA02713 hypothetical protein; 96.6 0.13 2.8E-06 61.2 20.2 175 653-834 304-530 (557)
398 PF05096 Glu_cyclase_2: Glutam 96.5 1.5 3.3E-05 46.5 25.5 190 545-742 33-250 (264)
399 COG3490 Uncharacterized protei 96.4 0.25 5.3E-06 52.1 18.1 170 649-828 44-246 (366)
400 PF07995 GSDH: Glucose / Sorbo 96.4 2.1 4.5E-05 47.5 27.3 66 767-832 253-330 (331)
401 PF05694 SBP56: 56kDa selenium 96.3 2.6 5.5E-05 47.6 29.5 218 608-826 86-392 (461)
402 KOG2395 Protein involved in va 96.3 0.045 9.7E-07 61.7 12.8 152 563-751 341-500 (644)
403 TIGR03074 PQQ_membr_DH membran 96.3 1.5 3.3E-05 53.9 26.7 224 567-801 194-482 (764)
404 KOG2444 WD40 repeat protein [G 96.2 0.0052 1.1E-07 62.5 4.4 139 611-753 32-179 (238)
405 PF14870 PSII_BNR: Photosynthe 96.2 0.72 1.6E-05 50.3 21.2 201 541-748 89-301 (302)
406 KOG4499 Ca2+-binding protein R 96.1 0.56 1.2E-05 48.2 18.3 133 598-733 109-264 (310)
407 COG1520 FOG: WD40-like repeat 96.1 3.3 7.1E-05 46.6 28.6 193 564-764 66-278 (370)
408 TIGR03118 PEPCTERM_chp_1 conse 96.1 1.8 4E-05 46.4 22.5 202 558-763 25-288 (336)
409 COG4257 Vgb Streptogramin lyas 96.0 2.5 5.5E-05 44.6 23.2 248 558-816 64-325 (353)
410 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.26 5.6E-06 45.1 13.9 98 643-746 2-109 (111)
411 KOG2377 Uncharacterized conser 96.0 1.5 3.2E-05 49.1 22.0 119 554-674 65-188 (657)
412 PLN00033 photosystem II stabil 95.9 4.1 8.9E-05 46.3 34.6 146 685-834 243-396 (398)
413 PF02333 Phytase: Phytase; In 95.9 2.1 4.6E-05 47.9 23.5 185 566-753 67-292 (381)
414 COG3204 Uncharacterized protei 95.9 1.2 2.6E-05 47.4 20.3 158 593-752 81-264 (316)
415 KOG2079 Vacuolar assembly/sort 95.8 0.13 2.9E-06 62.4 14.4 101 566-670 98-202 (1206)
416 PHA03098 kelch-like protein; P 95.8 0.31 6.7E-06 57.8 17.6 157 653-813 343-528 (534)
417 KOG3630 Nuclear pore complex, 95.7 0.092 2E-06 64.0 12.5 142 599-741 102-262 (1405)
418 PF10214 Rrn6: RNA polymerase 95.7 4.3 9.4E-05 50.3 27.6 177 595-797 77-277 (765)
419 COG4257 Vgb Streptogramin lyas 95.6 2 4.3E-05 45.3 20.2 211 599-823 63-291 (353)
420 PF15390 DUF4613: Domain of un 95.6 0.33 7.1E-06 55.9 15.9 172 641-819 20-214 (671)
421 PHA03098 kelch-like protein; P 95.6 0.44 9.6E-06 56.4 18.2 183 566-753 294-513 (534)
422 KOG2444 WD40 repeat protein [G 95.5 0.028 6E-07 57.4 6.1 100 734-835 70-175 (238)
423 TIGR02604 Piru_Ver_Nterm putat 95.4 6.3 0.00014 44.3 25.9 140 556-698 14-201 (367)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 95.3 3.6 7.7E-05 46.9 22.9 71 683-753 310-400 (415)
425 PLN02153 epithiospecifier prot 95.3 1.4 3.1E-05 48.8 19.9 173 653-829 86-325 (341)
426 PRK13684 Ycf48-like protein; P 95.3 2 4.3E-05 47.7 20.8 148 597-750 172-330 (334)
427 KOG1916 Nuclear protein, conta 95.2 0.0083 1.8E-07 70.9 1.7 171 550-753 127-325 (1283)
428 KOG2079 Vacuolar assembly/sort 95.1 0.069 1.5E-06 64.8 8.8 95 692-789 99-198 (1206)
429 PF10647 Gmad1: Lipoprotein Lp 95.1 4.1 8.8E-05 43.3 21.5 138 599-741 25-184 (253)
430 PF10168 Nup88: Nuclear pore c 94.8 5.5 0.00012 48.7 24.0 93 598-711 85-180 (717)
431 TIGR02604 Piru_Ver_Nterm putat 94.7 0.85 1.8E-05 51.3 16.0 105 722-828 71-204 (367)
432 PF12234 Rav1p_C: RAVE protein 94.6 1.2 2.5E-05 53.1 17.0 126 543-671 17-156 (631)
433 TIGR03074 PQQ_membr_DH membran 94.6 3 6.5E-05 51.4 21.1 177 655-835 196-475 (764)
434 smart00036 CNH Domain found in 94.6 8.8 0.00019 42.0 29.2 231 566-806 12-280 (302)
435 COG5276 Uncharacterized conser 94.5 8 0.00017 41.4 27.8 226 558-795 131-368 (370)
436 PF03022 MRJP: Major royal jel 94.4 8.5 0.00018 41.8 22.4 163 664-826 35-254 (287)
437 PRK10350 hypothetical protein; 94.4 0.15 3.2E-06 46.6 7.1 30 68-97 21-51 (145)
438 PF10433 MMS1_N: Mono-function 94.4 14 0.0003 43.6 28.6 245 564-817 219-503 (504)
439 PF10168 Nup88: Nuclear pore c 94.4 2.8 6.1E-05 51.1 20.3 27 555-581 84-110 (717)
440 COG3823 Glutamine cyclotransfe 94.2 1.4 3.1E-05 44.6 14.2 173 608-785 55-247 (262)
441 PF12894 Apc4_WD40: Anaphase-p 94.1 0.14 3E-06 39.4 5.5 33 555-588 11-43 (47)
442 PHA02790 Kelch-like protein; P 94.1 1.8 3.8E-05 50.7 17.4 177 566-753 271-472 (480)
443 COG1520 FOG: WD40-like repeat 94.1 13 0.00027 41.9 28.1 185 611-801 70-273 (370)
444 PLN02193 nitrile-specifier pro 94.0 16 0.00034 42.7 29.0 169 653-828 176-387 (470)
445 COG3292 Predicted periplasmic 94.0 3.4 7.4E-05 47.7 18.3 266 555-833 164-443 (671)
446 PLN02153 epithiospecifier prot 93.9 11 0.00025 41.7 22.8 105 566-676 32-172 (341)
447 PF14761 HPS3_N: Hermansky-Pud 93.9 4 8.7E-05 41.9 17.0 56 568-624 29-92 (215)
448 TIGR03548 mutarot_permut cycli 93.8 6.4 0.00014 43.3 20.4 100 653-753 73-196 (323)
449 KOG2280 Vacuolar assembly/sort 93.6 9.8 0.00021 45.5 21.6 214 555-778 43-271 (829)
450 PF11498 Activator_LAG-3: Tran 93.5 0.021 4.6E-07 60.7 0.0 13 122-134 372-384 (468)
451 PHA02790 Kelch-like protein; P 93.5 3.1 6.7E-05 48.7 17.9 142 653-801 319-475 (480)
452 PLN02193 nitrile-specifier pro 93.3 10 0.00022 44.3 21.8 190 608-803 175-417 (470)
453 KOG1916 Nuclear protein, conta 93.2 0.02 4.3E-07 67.8 -0.8 118 558-676 186-328 (1283)
454 PF10214 Rrn6: RNA polymerase 93.2 29 0.00062 43.2 27.4 156 553-711 77-277 (765)
455 KOG3630 Nuclear pore complex, 93.0 0.74 1.6E-05 56.6 11.6 140 683-825 103-261 (1405)
456 PF12234 Rav1p_C: RAVE protein 92.9 2.7 5.8E-05 50.1 16.1 109 723-835 30-154 (631)
457 PLN00033 photosystem II stabil 92.9 20 0.00044 40.7 25.4 109 681-793 281-396 (398)
458 TIGR03548 mutarot_permut cycli 92.9 7.3 0.00016 42.8 19.0 108 566-676 72-199 (323)
459 PRK14131 N-acetylneuraminic ac 92.6 14 0.00029 41.8 21.1 14 663-676 189-202 (376)
460 PF14727 PHTB1_N: PTHB1 N-term 92.4 24 0.00052 40.4 29.1 147 505-670 36-203 (418)
461 PF12894 Apc4_WD40: Anaphase-p 92.2 0.42 9.1E-06 36.7 5.6 31 597-627 11-41 (47)
462 COG1770 PtrB Protease II [Amin 92.1 32 0.00069 41.0 24.1 198 599-801 130-353 (682)
463 PF02333 Phytase: Phytase; In 91.6 27 0.00059 39.3 22.8 180 653-835 68-288 (381)
464 TIGR03547 muta_rot_YjhT mutatr 91.5 26 0.00057 38.8 22.2 41 789-829 291-332 (346)
465 KOG2247 WD40 repeat-containing 91.4 0.024 5.2E-07 63.3 -2.8 139 684-829 38-180 (615)
466 PF10395 Utp8: Utp8 family; I 91.4 36 0.00077 41.0 22.7 120 679-801 128-264 (670)
467 KOG1896 mRNA cleavage and poly 91.4 50 0.0011 41.8 26.2 137 693-834 1047-1210(1366)
468 KOG2247 WD40 repeat-containing 91.2 0.056 1.2E-06 60.5 -0.3 146 600-748 37-185 (615)
469 PF14761 HPS3_N: Hermansky-Pud 91.1 6.9 0.00015 40.2 14.5 136 693-834 29-211 (215)
470 TIGR03547 muta_rot_YjhT mutatr 90.9 29 0.00064 38.4 21.6 64 566-631 17-97 (346)
471 PF14781 BBS2_N: Ciliary BBSom 90.9 6 0.00013 37.5 12.8 107 690-801 8-130 (136)
472 KOG2377 Uncharacterized conser 90.8 3.4 7.4E-05 46.4 12.8 103 721-825 65-171 (657)
473 KOG1983 Tomosyn and related SN 90.8 6.2 0.00013 50.1 17.0 227 556-800 36-268 (993)
474 PF10433 MMS1_N: Mono-function 90.7 39 0.00084 39.8 22.9 224 606-834 219-473 (504)
475 PF08728 CRT10: CRT10; InterP 90.7 5.8 0.00013 47.8 15.6 103 732-835 112-244 (717)
476 PF07569 Hira: TUP1-like enhan 90.7 1.5 3.3E-05 45.6 9.7 70 684-753 14-97 (219)
477 COG3823 Glutamine cyclotransfe 90.7 17 0.00037 37.1 16.4 169 566-740 55-247 (262)
478 PRK14131 N-acetylneuraminic ac 90.7 20 0.00043 40.5 19.6 39 790-828 314-353 (376)
479 TIGR03606 non_repeat_PQQ dehyd 90.6 38 0.00082 39.2 32.3 57 553-609 27-90 (454)
480 PF13449 Phytase-like: Esteras 90.3 33 0.00071 37.9 22.3 100 683-783 87-231 (326)
481 KOG4460 Nuclear pore complex, 90.3 6.5 0.00014 45.0 14.5 99 599-718 105-206 (741)
482 PF08801 Nucleoporin_N: Nup133 90.0 19 0.00042 41.2 19.1 30 768-797 191-220 (422)
483 TIGR03118 PEPCTERM_chp_1 conse 89.9 32 0.0007 37.2 24.9 215 599-817 24-307 (336)
484 COG5167 VID27 Protein involved 89.9 3.5 7.6E-05 46.9 12.0 135 691-828 478-624 (776)
485 PF05935 Arylsulfotrans: Aryls 89.6 48 0.001 38.8 24.4 141 575-721 126-312 (477)
486 PRK05560 DNA gyrase subunit A; 89.4 55 0.0012 40.9 23.4 229 607-835 496-770 (805)
487 KOG4369 RTK signaling protein 89.1 0.33 7.1E-06 59.2 3.7 6 280-285 2018-2023(2131)
488 PF14781 BBS2_N: Ciliary BBSom 89.1 12 0.00027 35.5 13.3 115 602-718 3-133 (136)
489 COG5167 VID27 Protein involved 89.0 6 0.00013 45.1 13.0 141 651-796 478-632 (776)
490 PF07569 Hira: TUP1-like enhan 88.8 2.4 5.2E-05 44.1 9.5 61 774-835 18-93 (219)
491 KOG2280 Vacuolar assembly/sort 88.4 13 0.00029 44.4 15.8 165 663-833 64-242 (829)
492 PF10395 Utp8: Utp8 family; I 88.3 67 0.0015 38.7 25.9 155 597-753 129-307 (670)
493 PF07250 Glyoxal_oxid_N: Glyox 88.1 5 0.00011 42.3 11.4 129 704-832 48-194 (243)
494 KOG1898 Splicing factor 3b, su 88.0 83 0.0018 39.5 32.0 163 665-833 855-1044(1205)
495 KOG1900 Nuclear pore complex, 87.8 4.6 0.0001 50.9 12.2 137 698-835 95-270 (1311)
496 COG1506 DAP2 Dipeptidyl aminop 87.5 75 0.0016 38.5 23.5 260 557-828 14-331 (620)
497 PF13449 Phytase-like: Esteras 87.5 28 0.00062 38.4 17.6 100 724-824 86-231 (326)
498 KOG1900 Nuclear pore complex, 87.0 4.7 0.0001 50.9 11.6 202 574-793 96-335 (1311)
499 COG5290 IkappaB kinase complex 87.0 23 0.0005 42.6 16.5 269 508-799 34-369 (1243)
500 PRK05560 DNA gyrase subunit A; 86.9 94 0.002 38.9 28.3 262 562-825 493-799 (805)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-44 Score=371.61 Aligned_cols=306 Identities=25% Similarity=0.389 Sum_probs=275.9
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
....+++|+-|.++++|+. .+-.+..+.++|..-|.|++|+|||+.||+|+.||.|++||.
T Consensus 126 ~g~~l~tGsGD~TvR~WD~-------------------~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDL-------------------DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCceEEecCCCceEEeecc-------------------CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 3378999999999999932 233457788999999999999999999999999999999999
Q ss_pred CCCeEE-EEeccCCCCeEEEEECC-----CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 585 ESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 585 ~t~~~i-~~l~~h~~~V~sv~fsp-----dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
++++.+ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+. ++..+.+|..+|+|+.|-- ..++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEe
Confidence 998766 78899999999999976 57899999999999999999765 5899999999999999984 458999
Q ss_pred EeCCCcEEEEECCCCeeeeEeecC---ceEEEE-----------ecCCC-------------------------EEEEEE
Q 003271 659 CDNNSEIRYWSINNGSCAGVFKSG---ATQMRF-----------QPRLG-------------------------RILAAA 699 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~f-----------sp~~~-------------------------~ll~~s 699 (835)
|+.|++|++|+...|++.+.++++ ++.++. .|.+. .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 999999999999999998888755 555543 34444 499999
Q ss_pred cCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 700 IENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 700 ~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
.|..+.+|+... .+++..+.+|...|..+.|+||++||++++ |..|++||-+++ +.+.++.+|-..|+.|+|+.|
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccC
Confidence 999999999865 458889999999999999999999999999 999999999999 889999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 778 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 778 g~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+.|++++.|.++++||+++.++. .+.+|.+.|.++.|+|||..+++|+.|+.++||.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999987 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-42 Score=356.91 Aligned_cols=287 Identities=24% Similarity=0.382 Sum_probs=264.0
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
++-..+.||.++|.|+.|+|+|..||+|+.|.++++||+.+..+..++++|...|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEE
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAA 698 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~----g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~ 698 (835)
..++...-+.+.+|...|++++|.|- ...++++++.||.|+|||+..+.++..+.++ ++|++|--+ ++++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 2347889999999999999999999888765 888888755 789999
Q ss_pred EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-----------CCCC-------------------------EEEEEe-
Q 003271 699 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 741 (835)
Q Consensus 699 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs-----------pdg~-------------------------~Lasgs- 741 (835)
+.|++|++|+...+.+...+.+|...|+.++.+ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999998876 3333 499999
Q ss_pred CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC
Q 003271 742 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 820 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~ 820 (835)
|.++.+|+-...+ +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|+.++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 7799999976542 678888999999999999999999999999999999999999988 7889999999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 003271 821 MVASASHDKCVKIWK 835 (835)
Q Consensus 821 ~LaSgs~DG~V~IWd 835 (835)
+|++|+.|.+++|||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=349.61 Aligned_cols=283 Identities=27% Similarity=0.437 Sum_probs=264.8
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEe
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWD 625 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWD 625 (835)
+..--+-+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..++||+.||+|++|+
T Consensus 168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3334477889999999999999999999999999999999999999999999999999996 66899999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCC
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg 702 (835)
+++.. ++..+.+|...|..++|+|+|+ +|.+++.|.+-++||++++..+.... .++.+++|.++|..+++|+.|.
T Consensus 248 ~~~e~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 248 LSQET-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred cCCCc-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 99754 5889999999999999999987 67799999999999999988775554 4599999999999999999999
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC-CCCE
Q 003271 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPS 780 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~ 780 (835)
.-+|||+++++++..+.+|...|.+|.|+|+|..|++|+ |++++|||++.. ..+..+..|.+-|+.|.|+| .|.+
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeE
Confidence 999999999999999999999999999999999999999 999999999987 67899999999999999998 7899
Q ss_pred EEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 781 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 781 L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|++++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.+|++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999988 7889999999999999999999999999999994
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.8e-38 Score=315.72 Aligned_cols=290 Identities=18% Similarity=0.323 Sum_probs=262.9
Q ss_pred ceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (835)
Q Consensus 543 ~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~ 622 (835)
..+...++|+||.++|+++.|++|.++|++++.||++.|||.-+...++.++-....|..++|+|.++++|.|+-|+.+.
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 34555689999999999999999999999999999999999999988888988999999999999999999999999999
Q ss_pred EEecCCC--C---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEec-CCC
Q 003271 623 VWDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQP-RLG 693 (835)
Q Consensus 623 IWDl~t~--~---~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp-~~~ 693 (835)
||++.+. + ...+.+.+|.+.+.|+.|.+|+ .|++++.|.++.+||++++..+..|.++ +.++.+.| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999865 2 2357789999999999999864 3558999999999999999999998755 88899999 899
Q ss_pred EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
.+++|+.|+..++||++.+.++..|.+|...|.+|+|.|+|.-+++|+ |++.++||++.... ..+.........|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeE
Confidence 999999999999999999999999999999999999999999999999 88999999998732 2223333445689999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 773 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|+..|++|++|..|.++.+||.-.++.+ .+.+|+..|+++..+|||..|+||+.|..|+||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999888877 8889999999999999999999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.5e-38 Score=330.21 Aligned_cols=270 Identities=26% Similarity=0.378 Sum_probs=250.6
Q ss_pred cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC--CCEEEEEeCCCe
Q 003271 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKK 578 (835)
Q Consensus 501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd--g~~Lasgs~Dg~ 578 (835)
.+...+..+++||.++.+++|..+ ....+.++.+|+..|.++.|+|. +..||+|+.||+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~-------------------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVP-------------------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecC-------------------CcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence 344455799999999999999332 23568889999999999999996 568999999999
Q ss_pred EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
|++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++.. +....+|...|.+++|+++|. ++++
T Consensus 243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~t 320 (459)
T KOG0272|consen 243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAAT 320 (459)
T ss_pred eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eeec
Confidence 99999999999999999999999999999999999999999999999999775 677889999999999999987 8899
Q ss_pred EeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CC
Q 003271 659 CDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SG 734 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-dg 734 (835)
|+.|..-+|||+++++++..+.++ |..+.|+|+|-.+++|+.|++++|||++...++..+.+|.+-|+.|+|+| .|
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 999999999999999999988765 88899999999999999999999999999999999999999999999998 78
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 735 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 735 ~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
.+|++++ |++++||..++. .++..+.+|.+.|.+|.+++++.+|++++.|.+|++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999 999999999888 88999999999999999999999999999999999995
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=300.79 Aligned_cols=287 Identities=24% Similarity=0.439 Sum_probs=261.4
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc-CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~-~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW 624 (835)
..+-.+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++ ...+-...+++|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 345567899999999999999999999999999999995 4556677889999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCC
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg 702 (835)
|+++++. .+.+.+|...|.+++-+..|..++++++.|+++++||+++..+++++ +..++++.|.-.+..+++|+-|+
T Consensus 118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 9999885 88899999999999977778889999999999999999999999988 56799999999999999999999
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ceEEEeecCC----CceEEEEEeC
Q 003271 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHP 776 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~-~~i~~l~~~~----~~V~sv~fsp 776 (835)
.|++||++.....+.+.+|...|+.+..+++|.++.+-+ |.+|++||++..... .++..+.++. .....|+|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999999999999999999999999999999 999999999875432 3466666553 3457789999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
+++++-+|+.|..+++||.....++ .+.+|.+.|+++.|+|...+|.+++.|++|++
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 9999999999999999999986665 89999999999999999999999999999986
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-34 Score=286.80 Aligned_cols=283 Identities=20% Similarity=0.336 Sum_probs=244.4
Q ss_pred EEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcC-----CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271 546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~-----t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg 619 (835)
....++++|++.|+.++..+. ...|++++.|.+|.+|++. .|..++.+++|+..|..+..++||.+.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345678999999999999986 4578999999999999864 4677899999999999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecC--CC
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPR--LG 693 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~--~~ 693 (835)
++++||+.+++ ..+.|.+|...|.+++|++++. -+++|+.|.+|++|++...-...... .-+.+++|+|+ ..
T Consensus 86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCc-EEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999985 5899999999999999999966 66799999999999998554443333 23899999999 67
Q ss_pred EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
.|+.++.|+.|++||+++.+....+.+|.+.++.+.++|||.++++|+ ||.+.+||++.+ +++..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 888999999999999999999999999999999999999999999999 999999999988 5666554 68899999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E----eccC-----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 773 VFHPTFPSLLVIGCYETLELWNMTENKTL-T----LSAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~----l~~h-----~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|+|+...|+.+ .+..|+|||++++.++ . ..+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999997655554 4456999999998876 1 1122 22356789999999999999999999994
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=322.59 Aligned_cols=284 Identities=30% Similarity=0.535 Sum_probs=255.2
Q ss_pred EEEecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271 548 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (835)
Q Consensus 548 i~~l~g-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW 624 (835)
+..+.+ |...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 455545 48999999999999999999999999999998877 777888999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcC
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~d 701 (835)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+.. .++.++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966656789999999999999999999 7899999999999999999999988874 48999999999999999999
Q ss_pred CcEEEEECCCCe--EEEEEcCCCCC--eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc---eEEEE
Q 003271 702 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 773 (835)
Q Consensus 702 g~I~IwDl~t~~--~i~~l~~h~~~--I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~---V~sv~ 773 (835)
+.|+|||+.++. ++..+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777776665 99999999999999999 889999999988 677777777664 44455
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003271 774 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 835 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-~~~V~~la~spdg~~LaSgs--~DG~V~IWd 835 (835)
+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+++++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6789999999999999999999987766 78889 89999999999999999998 789999995
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.2e-33 Score=293.91 Aligned_cols=282 Identities=32% Similarity=0.543 Sum_probs=253.1
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
+.+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45679999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.+. ...+..|...|.++.|++++ .++++++.|+.|++||+.+++....+. ..+.++.|+|++..+++++.++.|+
T Consensus 83 ~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GEC-VRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ccc-eEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 653 66777888899999999984 477788889999999999888777665 3488999999988777777799999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271 706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg 784 (835)
+||+++++.+..+..|...|.+++|++++..+++++ |+.|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999886 6666776788899999999998888877
Q ss_pred EcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 785 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 6668889999999999999999999999999997
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-35 Score=302.59 Aligned_cols=288 Identities=25% Similarity=0.467 Sum_probs=269.7
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
.+.+...+.+|..+|+.+-|.|+-.++++++.|++|++||..++++...+++|.+.|.+|+|+..|++|++++.|-.+++
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 33456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEc
Q 003271 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~ 700 (835)
||..+...+++...+|...|.+++|-|.|. .+++|+.|.+|+.|++.++.|++++.++ +..++.+.||..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 999976556888999999999999999986 6669999999999999999999999876 888999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC---------------CCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271 701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 764 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd---------------g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~ 764 (835)
|.+|++|-+.++.+...+..|..+|.|++|.|. +.++++++ |++|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999762 25888999 999999999999 99999999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|.+.|..++|+|.|+||+++..|++|++||+.++.++ .+..|+.-|+++.|+.+..+++||+-|-++++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999998 7789999999999999999999999999999995
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-33 Score=300.27 Aligned_cols=337 Identities=19% Similarity=0.366 Sum_probs=277.9
Q ss_pred CccccCccccCCCcEEEeccCCCCEEEeecCCC------------------------------CCCCcccccccccCCCc
Q 003271 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKGF 543 (835)
Q Consensus 494 ~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~------------------------------~~~~~~~~~~~~~~~g~ 543 (835)
.+......+.+...++++|...++|++|..... .++++++++.+.++++.
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 444555566666789999999999999965552 14677888888888887
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~ 622 (835)
...++ .||...|.+|+|-|...+ +++|+.|++|.+|+-...+...++..|...|.|++|+|||.+|++++.||.|.
T Consensus 139 SvGei---~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 139 SVGEI---TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred cccee---eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 76664 599999999999998775 99999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce----EEEEecCCCEE
Q 003271 623 VWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT----QMRFQPRLGRI 695 (835)
Q Consensus 623 IWDl~t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~----~l~fsp~~~~l 695 (835)
|||-.+++. +..+. +|.+.|.+++|+||+.. +++++.|.+++|||+.+.+++.++..+.. .+-.-...+.|
T Consensus 216 iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 216 IYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEcCCCccE-EEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 999998875 56665 89999999999999875 55999999999999999999998875422 12222226899
Q ss_pred EEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce--------EE------
Q 003271 696 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------IH------ 760 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~--------i~------ 760 (835)
++.+.+|.|.+++.....+...+.+|...|+++..++++++|++|+ ||.|.-||..++...+. +.
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 9999999999999999999999999999999999999999999999 99999999764321100 00
Q ss_pred --------------------------------------------------------------------------------
Q 003271 761 -------------------------------------------------------------------------------- 760 (835)
Q Consensus 761 -------------------------------------------------------------------------------- 760 (835)
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence
Q ss_pred ----------------------------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCe
Q 003271 761 ----------------------------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLV 810 (835)
Q Consensus 761 ----------------------------~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V 810 (835)
.+..|..+|++++|+||+.+|+++...+.|.+||+.+.+.. .+.-|...|
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 01123445666777777777777777777777777666654 445699999
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 811 SSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 811 ~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+++|+|+..+||||+-|-.|.||+
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEE
Confidence 9999999999999999999999995
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-33 Score=302.02 Aligned_cols=305 Identities=21% Similarity=0.350 Sum_probs=260.7
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~ 587 (835)
.+++|+.|..|..| .|.+|+-..+++.|..-|.|+.|+|||.++|+++.||+|.|||-.++
T Consensus 162 Ri~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 162 RIATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred EEEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 57788888888888 57778888889999999999999999999999999999999999999
Q ss_pred eEEEEec---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc---------------------------------
Q 003271 588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------------- 631 (835)
Q Consensus 588 ~~i~~l~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--------------------------------- 631 (835)
+.+..+. +|.+.|.++.|+||+..|+|++.|.+++|||+.+.+.
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 9999997 8999999999999999999999999999999976541
Q ss_pred ---------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-------------------------
Q 003271 632 ---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG------------------------- 677 (835)
Q Consensus 632 ---------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~------------------------- 677 (835)
++..+.+|...|+++..+++++ .|++|+.||.|.-||+.++..-+
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence 1335678999999999999985 66799999999999987653210
Q ss_pred ------Ee------------------------------------------e-----------cCceEEEEecCCCEEEEE
Q 003271 678 ------VF------------------------------------------K-----------SGATQMRFQPRLGRILAA 698 (835)
Q Consensus 678 ------~~------------------------------------------~-----------~~i~~l~fsp~~~~ll~~ 698 (835)
.+ . -...+++++|++..+++|
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 00 0 114567899999999999
Q ss_pred EcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271 699 AIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 699 s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs 775 (835)
+.|+.|+||.+.... ....+..|..+|++++|+||+.||++|. .+.|.+||+.+... .......|...|.+++|+
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWS 539 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeC
Confidence 999999999998754 3335566999999999999999999999 99999999998742 444556689999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCcE--EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 776 PTFPSLLVIGCYETLELWNMTENKT--LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 776 pdg~~L~sgs~dg~I~IwDl~~~~~--~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|+..++++|+-|-.|.||+++.... ....+|...|+.+.|- |...|++.+.|..|++|.
T Consensus 540 P~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred CCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence 9999999999999999999976543 3556899899999996 456899999999999995
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=297.37 Aligned_cols=288 Identities=20% Similarity=0.383 Sum_probs=264.1
Q ss_pred CceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q 003271 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (835)
Q Consensus 542 g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I 621 (835)
-.++...+++.+|.+-|.|+++.|...+|++|+.|++|+|||+.++++..++.+|-..|..+++++...||++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEE
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAA 698 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~ 698 (835)
++||++..+. ++.+.+|-+.|.|++.+|.-+ +|++|+.|.++++||+++...+..+.++ +..+.+.|.+..++++
T Consensus 218 KCwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 218 KCWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred EEEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 9999998774 899999999999999999854 7889999999999999999988888754 8888899999999999
Q ss_pred EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271 699 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778 (835)
Q Consensus 699 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg 778 (835)
+.|++|++||++.++....+..|...|.+++.+|....+++++.+.|+.|++..+ ..+..+.+|...|++++...|+
T Consensus 296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc
Confidence 9999999999999999999999999999999999999999999778999999988 6777799999999999998887
Q ss_pred CEEEEEEcCCeEEEEEcCCCcEEEe---------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 779 PSLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 779 ~~L~sgs~dg~I~IwDl~~~~~~~l---------~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++++|+..|.|.+||.+++-.... ...+..|++.+|...|..|++|..|++|++|+
T Consensus 373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 688999999999999998865511 12356799999999999999999999999995
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=279.18 Aligned_cols=287 Identities=22% Similarity=0.314 Sum_probs=249.9
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
..-++++++.|.+|++|- ..+..+.+++....+.|..+.+.||+++||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWq-------------------a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQ-------------------ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeee-------------------hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 456899999999999992 2333567788888899999999999999999885 68999999
Q ss_pred CCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 585 ~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
.+++ ++.++.+|+..|++|.|..+|++++||++||+++|||++... ......|.++|+++..+|+-.. |++|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQte-Lis~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTE-LISGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcce-EEeecCC
Confidence 8765 589999999999999999999999999999999999999844 3444457899999999998664 5599999
Q ss_pred CcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcC
Q 003271 663 SEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNT 732 (835)
Q Consensus 663 g~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~------~~i~~l~~h~~~I~sl~fsp 732 (835)
|.|++||+....+...+- ..+.++.+.|+|.+++++...|..++|++-+. +++.++..|...|..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 999999999886665543 45889999999999999999999999998753 56677889999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCe
Q 003271 733 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 810 (835)
Q Consensus 733 dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V 810 (835)
|++||++++ |.+++||+..+. .+.-..+.+|...++.|+|+.++.||++++.|+.+++||+..++.+ ...+|-...
T Consensus 226 d~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 999999999 999999999876 3556678889999999999999999999999999999999999977 677888887
Q ss_pred eEEEEe
Q 003271 811 SSLAAS 816 (835)
Q Consensus 811 ~~la~s 816 (835)
.|++..
T Consensus 304 vc~~ln 309 (311)
T KOG0315|consen 304 VCVALN 309 (311)
T ss_pred EEEEee
Confidence 777764
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.2e-33 Score=277.82 Aligned_cols=266 Identities=19% Similarity=0.392 Sum_probs=239.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeEEeecCCCCeEEE
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 646 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl 646 (835)
-+|++++.|.+|++|...+|.+..++.....-|..+.+.|+++.||+++.- .|++||+.++.. ++..+.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 479999999999999999999999998878899999999999999998765 699999998765 789999999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-CCC
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 723 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~~ 723 (835)
.|..+|+ .+++|++||+++|||++...+-+.+. .++.++..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999987 67799999999999999977766554 6799999999999999999999999999998877766543 456
Q ss_pred CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-
Q 003271 724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 798 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~---~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~- 798 (835)
.|.++...|||.+++++. .|..++|++-+.. ....+..+..|...+..|.++|++++|++++.|.+++||++++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999998 8899999997643 34567778899999999999999999999999999999999987
Q ss_pred cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 799 KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 799 ~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.. .+.+|...+++++||.||.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 222 7789999999999999999999999999999997
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=307.79 Aligned_cols=275 Identities=21% Similarity=0.438 Sum_probs=247.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
...|..+.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4569999999999999999999999999997776667778999999999999999999999999999999987543 34
Q ss_pred Eee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 635 TFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 635 ~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
.+. .|...|.+++|+|+. ..|++|++||+|+|||....+....+.++ +.++.|+|..+.|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 444 455999999999964 57789999999999999988877777655 8999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003271 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 788 (835)
Q Consensus 711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg 788 (835)
++.|+.++.+|+..|..+.|++++++|++++ |..+++||+++. +.+..+.+|...|+++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999976 7788889999999999999965 4667788899
Q ss_pred eEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 789 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 789 ~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999855555 4458999999999999999999999999999994
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-33 Score=279.25 Aligned_cols=272 Identities=16% Similarity=0.262 Sum_probs=235.1
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
....+.+++.|..+-+|....+ +......++.+.||...|..++.++||.+.++++.|+++++||+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 3568899999999999944443 12223457888999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec--CCCCeEEEEEcCCC-CcEEEEEeC
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSK-EDLLCSCDN 661 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~--h~~~V~sl~fsp~g-~~ll~sgs~ 661 (835)
.+++....|.+|...|.+++|++|.+.+++|+.|.+|++|++...- ..+... +.+-|.|+.|+|+. +.+|++++.
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence 9999999999999999999999999999999999999999998643 333332 37889999999985 668899999
Q ss_pred CCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271 662 NSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La 738 (835)
|++|++||+++.+....+.++ ++.+.++|||..++.|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+
T Consensus 171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEe
Confidence 999999999998888777654 8889999999999999999999999999999988776 889999999999999998
Q ss_pred EEeCCeEEEEEcCCCCCcceEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 739 SVSDELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 739 sgsDg~I~IwDl~t~~~~~~i~~l~~---------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
.+.+..|+|||+.+. .++.++.. ......+++|+++|..|+++-.|+.|++|.+.
T Consensus 250 ~at~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 250 AATATSIKIWDLESK---AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccCCceEEEeccch---hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 888888999999987 44444321 13345778999999999999999999999874
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-33 Score=295.94 Aligned_cols=314 Identities=19% Similarity=0.297 Sum_probs=269.1
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec----CCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP----ASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~----gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (835)
+.++++|+.|...++|...+. .+.......++.-..+. ..+..|++++|+.+|.+||+|..||.++|
T Consensus 191 ~~llasg~~~s~ari~~l~e~---------~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri 261 (524)
T KOG0273|consen 191 DGLLASGSGDSTARIWNLLEN---------SNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI 261 (524)
T ss_pred hhhhhccCCccceeeeeehhh---------ccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence 347889999999999944331 01111111111111111 23457999999999999999999999999
Q ss_pred EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (835)
Q Consensus 582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~ 661 (835)
|+. ++..+.++..|.++|.++.|+.+|.||++++.|+++.+||..++.. ...+..|..+-..|.|-.+. -|++++.
T Consensus 262 w~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~t 337 (524)
T KOG0273|consen 262 WNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSST 337 (524)
T ss_pred Eec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCC
Confidence 996 5678889999999999999999999999999999999999998764 67788888887888998653 5779999
Q ss_pred CCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC----
Q 003271 662 NSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG---- 734 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg---- 734 (835)
|+.|+++.+....++.++.+ .+.++.|+|.+..|++++.|++++||......+...+..|...|..+.|+|+|
T Consensus 338 d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccC
Confidence 99999999988888877764 48999999999999999999999999999999999999999999999999965
Q ss_pred -----CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCC
Q 003271 735 -----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK 808 (835)
Q Consensus 735 -----~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~ 808 (835)
..|++++ |++|++||+..+ .+++.+..|..+|++++|+|+++++++|+.||.|.||++.+++++....-.+
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 4677777 999999999998 8999999999999999999999999999999999999999999998888888
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 809 LVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 809 ~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|..++|+.+|.+|..+-.|+.|++-|
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 899999999999999999999998754
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=271.14 Aligned_cols=281 Identities=25% Similarity=0.442 Sum_probs=240.6
Q ss_pred eEEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCC---CeEEEEe-ccCCCCeEEEEECCCCCEEEEEECCC
Q 003271 545 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 619 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t---~~~i~~l-~~h~~~V~sv~fspdg~~Latgs~Dg 619 (835)
+..++.+.+|.+.|..++|+|- |..||+|+.|+.|+||+... ..+...+ .+|+..|.+|+|+|.|++|++||.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4567889999999999999998 88999999999999999884 4555555 47999999999999999999999999
Q ss_pred eEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEeec---CceEEEEecCC
Q 003271 620 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKS---GATQMRFQPRL 692 (835)
Q Consensus 620 ~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~~~~~~---~i~~l~fsp~~ 692 (835)
++.||.-..+. .++.++.+|...|.|++|+++|+ +|++|+.|+.|.||.+..+ ++...+.. .+..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999876554 35788999999999999999976 8889999999999999754 44555554 48889999999
Q ss_pred CEEEEEEcCCcEEEEECC---CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271 693 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 768 (835)
Q Consensus 693 ~~ll~~s~dg~I~IwDl~---t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~ 768 (835)
+.|+++++|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 4588999999999999999999999999999 999999986643 12236678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc------EE--EeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 003271 769 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 835 (835)
Q Consensus 769 V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~------~~--~l~~h~~~V~~la~spd-g~~LaSgs~DG~V~IWd 835 (835)
++.+.|. ...|++++.|+.|++|.....- .+ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 9999998 4469999999999999766431 11 34579999999999995 67999999999999994
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.4e-34 Score=303.30 Aligned_cols=288 Identities=20% Similarity=0.344 Sum_probs=251.8
Q ss_pred EEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
..+.++.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+.+|..|++++.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45788999999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc
Q 003271 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~ 700 (835)
||++++.+ +..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+. +.+..+.|-+++.++++.+.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999985 33333 345789999999998899999999999999999999887776 45888999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC--CceEEEEEeC
Q 003271 701 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 776 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv~fsp 776 (835)
|+.++||+.+.+..+..+.. +.....||..+|++.++++-+ |+.|.||.+...-.......+.+|. +.-..|.|+|
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998876654432 344567889999999999988 9999999976553333334455553 5567889999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 835 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg-~~LaSgs~DG~V~IWd 835 (835)
||.+|++|+.+|.+.+||.++-+.+ .+.+|...+..+.|+|.. ..+|||+.||.|++||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999888 888999999999999965 4899999999999997
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.6e-32 Score=299.19 Aligned_cols=310 Identities=21% Similarity=0.310 Sum_probs=269.2
Q ss_pred ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC-CeEE
Q 003271 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAV 580 (835)
Q Consensus 502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~ 580 (835)
+...-.++++|=..+...+| .-..+..++.+.-...+|..++|+..|.+||.|+.. |.+.
T Consensus 273 fH~~t~~lvvgFssG~f~Ly-------------------elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLY-------------------ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL 333 (893)
T ss_pred ccCCceEEEEEecCCeeEEE-------------------ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence 44455788888777777777 233456778888888899999999999999998754 7999
Q ss_pred EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
||+..+...+....+|...|++++++|||.+++||+.||.|+|||...+- |+.+|..|++.|+.+.|+..++ .+++.+
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssS 411 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSS 411 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCceEEEEEEecCC-EEEEee
Confidence 99999999999999999999999999999999999999999999999765 6999999999999999999976 666888
Q ss_pred CCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271 661 NNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 735 (835)
Q Consensus 661 ~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~ 735 (835)
-||+|+.||+...++.+++..+ ..+++..|.|..+++|+.|. .|.+|++.+|+.+-.+.||.++|.+++|+|.+.
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 9999999999999999998765 67899999999999999884 799999999999999999999999999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E-----------
Q 003271 736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T----------- 802 (835)
Q Consensus 736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~----------- 802 (835)
.|++++ |.+|++||+-... ..+.+ -.+...+..++|+|+|+.|++++.||.|.+||...+..+ .
T Consensus 492 ~LaS~SWDkTVRiW~if~s~--~~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR 568 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSSS--GTVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR 568 (893)
T ss_pred eEEeccccceEEEEEeeccC--ceeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence 999999 9999999997652 12223 335678999999999999999999999999999765433 0
Q ss_pred ---------eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 803 ---------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 803 ---------l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
-.+....++.|++++||++|++||....|+||+
T Consensus 569 ~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 569 KETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred cccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 112246789999999999999999999999986
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-33 Score=291.78 Aligned_cols=288 Identities=20% Similarity=0.327 Sum_probs=245.2
Q ss_pred CceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (835)
Q Consensus 542 g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D 618 (835)
..+..+..++..|++.|+-+.||++|+|||+++.|.+..+|.+.. .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456677889999999999999999999999999999999998753 45678999999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGR 694 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ 694 (835)
..+.+||+.++......-.+|...+.+++|.|||.. +++|+.|+.|..||+... ...... ..+.++++.+||.+
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcE
Confidence 999999999988644444456688999999999875 568999999999999843 333332 33889999999999
Q ss_pred EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc--eEE
Q 003271 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHS 771 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~--V~s 771 (835)
+++.+.|..|++|+.++...+..+. ...+|++++.+.+++++++.- +..|.+||+... +.+..+.+|... +..
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence 9999999999999999876665444 467899999999999988877 899999999865 666677776543 333
Q ss_pred EEEe-CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003271 772 CVFH-PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 835 (835)
Q Consensus 772 v~fs-pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg-~~LaSgs~DG~V~IWd 835 (835)
-+|- .+..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+|+||.
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 3454 45589999999999999999999988 889999999999999965 5899999999999994
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-31 Score=294.90 Aligned_cols=314 Identities=20% Similarity=0.334 Sum_probs=255.0
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
++++.| ....+.+|-.+..... .-.+|...+++.+|.+.|+++.|+.|.++|++|+.|..++||+++.
T Consensus 109 ~~fav~-~gn~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 109 KFFAVG-CGNLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG 176 (893)
T ss_pred cEEEEE-ecceeEEEecCcchhc-----------ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence 677766 4477888844433211 2346777889999999999999999999999999999999999987
Q ss_pred CeE--EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-----------------------CCc-----ee---
Q 003271 587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----------------------PDY-----SL--- 633 (835)
Q Consensus 587 ~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-----------------------~~~-----~~--- 633 (835)
.+- ...+.+|.+.|.++-|..+...++|.+.||.+.+|.... ++. ..
T Consensus 177 ~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~ 256 (893)
T KOG0291|consen 177 NKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT 256 (893)
T ss_pred ccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence 665 577889999999999999999999999999999998761 000 00
Q ss_pred --EEeecCCCC------------------------------------------eEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271 634 --RTFTGHSTT------------------------------------------VMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (835)
Q Consensus 634 --~~~~~h~~~------------------------------------------V~sl~fsp~g~~ll~sgs~Dg~I~iwD 669 (835)
..+...... |..+.|+..|+.+.+.|+.-|.+.||+
T Consensus 257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 001111133 444444445555555555556666777
Q ss_pred CCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeE
Q 003271 670 INNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV 745 (835)
Q Consensus 670 l~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I 745 (835)
..+..-+.... ..+.+++++|||..+++|+.||.|+|||..++-|+.+|..|.+.|+.++|+..|+.+++.+ ||+|
T Consensus 337 WqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 337 WQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred eeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence 66655544444 3488999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEcCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEE
Q 003271 746 RVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV 822 (835)
Q Consensus 746 ~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~L 822 (835)
+.||+... .+.+++.... ....+++..|.|..+++|+.|. .|+||++.+|+++ .+.+|+++|.+++|+|++..|
T Consensus 417 RAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 417 RAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred Eeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence 99999877 6777776543 4568889999999888888888 8999999999999 788999999999999999999
Q ss_pred EEEECCCcEEEeC
Q 003271 823 ASASHDKCVKIWK 835 (835)
Q Consensus 823 aSgs~DG~V~IWd 835 (835)
++++.|.+|++||
T Consensus 494 aS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 494 ASGSWDKTVRIWD 506 (893)
T ss_pred EeccccceEEEEE
Confidence 9999999999997
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.6e-32 Score=278.93 Aligned_cols=326 Identities=16% Similarity=0.199 Sum_probs=275.5
Q ss_pred CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (835)
Q Consensus 481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s 560 (835)
+.+.+.|..... .+-..++.+..+++++|+-|+..-+|....+ .....+.+|++.|+|
T Consensus 54 DdS~~tF~~H~~---svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~ 111 (399)
T KOG0296|consen 54 DDSLVTFDKHTD---SVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTC 111 (399)
T ss_pred ccceeehhhcCC---ceEEEEeCCCCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEE
Confidence 334444444333 2334445567899999999999999944433 135667899999999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC
Q 003271 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (835)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~ 640 (835)
+.|+.||.+||||+.+|.|+||...++.....+...-+.|.-+.|+|.+.+|+.|+.||.|.+|.+.+.. ..+.+.+|.
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~ 190 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHN 190 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCC
Confidence 9999999999999999999999999999998887667788899999999999999999999999999864 478999999
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 716 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~ 716 (835)
.++++-.|.|+|++ ++++..||+|++||+.++..+..+. ....++.++..+..++.|..++.+++....+++.+.
T Consensus 191 ~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 99999999999884 5589999999999999999888776 347888899999999999999999999999998887
Q ss_pred EEc--------CCCCCeEEEEE---cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271 717 KLQ--------GHKNQVHSVCW---NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 717 ~l~--------~h~~~I~sl~f---spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg 784 (835)
... .+...+.||.+ +..=.+.++|+ ||+|.|||+... .++..-.|...|..+.|.+ ..+|+++
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~ 344 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTA 344 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheee
Confidence 766 34444555554 44556777888 999999999875 3444556788899999999 7899999
Q ss_pred EcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 785 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.+|.|++||.++|.++ .+.+|...|.+++++|+.++++|++.|++.+||+
T Consensus 345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999999988 8889999999999999999999999999999985
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-31 Score=270.55 Aligned_cols=275 Identities=24% Similarity=0.389 Sum_probs=245.6
Q ss_pred CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (835)
Q Consensus 481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s 560 (835)
....+.|++++ +.++++|.|+.+-+|+ .++-.++..++-...-|..
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWD-------------------s~TtnK~haipl~s~WVMt 102 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWD-------------------SFTTNKVHAIPLPSSWVMT 102 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEEE-------------------cccccceeEEecCceeEEE
Confidence 45667777766 7899999999999993 3344556777778888999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCC------eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 561 CHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~------~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
|+|+|.|+++|+|+-|+...||++.+. ...+.+.+|++.+.|+.|.+| ..|+|+|.|.++.+||++++.. +.
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EE
Confidence 999999999999999999999999854 455778999999999999975 5899999999999999999875 88
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVET 711 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t 711 (835)
.|.+|.+.|.++++.|...+.+++|+-|+..++||++.+.++..|.++ |..++|.|+|..|++|+.|+..++||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 999999999999999955567889999999999999999999998754 99999999999999999999999999999
Q ss_pred CeEEEEEcC--CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271 712 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 712 ~~~i~~l~~--h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg 788 (835)
...+..+.. ...+|++++|+..|++|++|. |.++.|||.-.+ +.+..+.+|++.|.++..+|||.-+++|+.|.
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 888877763 345899999999999999988 899999999887 78889999999999999999999999999999
Q ss_pred eEEEEE
Q 003271 789 TLELWN 794 (835)
Q Consensus 789 ~I~IwD 794 (835)
.|+||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-32 Score=290.56 Aligned_cols=280 Identities=25% Similarity=0.442 Sum_probs=245.2
Q ss_pred EEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCC--CeEE--EEec----------cCCCCeEEEEECCCCCEE
Q 003271 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSRL 612 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t--~~~i--~~l~----------~h~~~V~sv~fspdg~~L 612 (835)
++.++ |..+|.+++|+|-.. +|++|+.|-..++|++.. .... ..++ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45555 999999999999665 899999999999999864 1111 1111 123579999999999999
Q ss_pred EEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEe
Q 003271 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQ 689 (835)
Q Consensus 613 atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fs 689 (835)
|+|++||.++||+.... .+.++..|.++|.++.|+.+|. +|++++.|+++.+||..++.....+... ...+.|-
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999998854 3788999999999999999987 5559999999999999999887766533 3557776
Q ss_pred cCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271 690 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 768 (835)
Q Consensus 690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~ 768 (835)
.+ ..+++.+.|+.|+|+-+....++.++.+|.++|.++.|+|.|.+|++++ |++++||..... .+++.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 65 6788999999999999999999999999999999999999999999999 999999998777 788899999999
Q ss_pred eEEEEEeCCCC---------EEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 769 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 769 V~sv~fspdg~---------~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|..+.|+|+++ .|++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+++|+|+.||.|+||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999764 5899999999999999999988 7779999999999999999999999999999995
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.3e-32 Score=304.25 Aligned_cols=274 Identities=23% Similarity=0.383 Sum_probs=238.1
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-------------------------------eEEEEecc
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEE 595 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-------------------------------~~i~~l~~ 595 (835)
.+.++......|+|+.|++|+.+||.|..|..|++|.+... ....++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 34444455567999999999999999999999999987521 12345678
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 003271 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (835)
Q Consensus 596 h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~ 675 (835)
|.++|..+.|+|+.++|+++|.|++||+|.+.+... +..+.+|..+|+++.|+|.| ++|++++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998764 77888999999999999996 5888999999999999999888
Q ss_pred eeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271 676 AGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 751 (835)
Q Consensus 676 ~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~ 751 (835)
.+.+-++ +.|+.|+|+..++++|+.|.+|++||+.++..++.|.||..+|.+++|+|+|++|++|+ |+.|+|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 8887654 88999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE------------------------E-EeccC
Q 003271 752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT------------------------L-TLSAH 806 (835)
Q Consensus 752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~------------------------~-~l~~h 806 (835)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-.. + .+..-
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 98 78888899999999999999999999999999999999853221 1 23334
Q ss_pred CCCeeEEEEeCCCCEEEEE
Q 003271 807 DKLVSSLAASTVNGMVASA 825 (835)
Q Consensus 807 ~~~V~~la~spdg~~LaSg 825 (835)
..+|.++.|....-.|+.|
T Consensus 685 ~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CceEEEEEEeccceeEEec
Confidence 4578888887765444444
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.4e-30 Score=317.63 Aligned_cols=282 Identities=18% Similarity=0.284 Sum_probs=238.1
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----e----EEEEeccCCCCeEEEEECCC-CCEEEEEECCCeE
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTV 621 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~----~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I 621 (835)
+..|.+.|++++|+++|++||+|+.|++|+||++... . ....+. +...|.+++|++. +.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122333 3467999999874 7899999999999
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEe-cCCCEEEEE
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQ-PRLGRILAA 698 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fs-p~~~~ll~~ 698 (835)
+|||+.++. .+..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+.. .+.++.|. +++..+++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999999765 47788899999999999985556888999999999999999888777653 47788885 568899999
Q ss_pred EcCCcEEEEECCCCe-EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CcceEEEeecCCCceEEEE
Q 003271 699 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 699 s~dg~I~IwDl~t~~-~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~---~~~~i~~l~~~~~~V~sv~ 773 (835)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|+|||++... ...++..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998765 567788899999999997 677888888 9999999997532 2356788899999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCCcEE--------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 774 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~IwDl~~~~~~--------------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1234556799999999999999999999999996
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.6e-31 Score=291.87 Aligned_cols=288 Identities=21% Similarity=0.324 Sum_probs=259.9
Q ss_pred eeEEEEEecCCCCCEEEEEE-eCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271 544 TFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~f-Spdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~ 622 (835)
++...+.+-|..+.|.+|+| .|+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|-+|+||+.|.+|+
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 34556677788999999997 457789999999999999999887766 7889999999999666778999999999999
Q ss_pred EEecCCCC---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---e---------EeecCceEEE
Q 003271 623 VWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---G---------VFKSGATQMR 687 (835)
Q Consensus 623 IWDl~t~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~---------~~~~~i~~l~ 687 (835)
+|.++++. .++....+|...|.+++++..+..+|++++.|++|++|++...+.. . .+...+.+++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 99885432 2456678999999999999988999999999999999999863221 1 1224599999
Q ss_pred EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC
Q 003271 688 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 766 (835)
Q Consensus 688 fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~ 766 (835)
++|++..+++|+.|.+.+||+++.......+.+|...|.||.|++....+++++ |++|+||.+.+. .|+.++.+|.
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~ 547 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHT 547 (775)
T ss_pred ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCcc
Confidence 999999999999999999999999999999999999999999999999999999 999999999998 8999999999
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 767 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..|..+.|-.++..|++++.||-|+||++++++|+ .+..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 99999999999999999999999999999999998 8899999999999999999999999999999995
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-31 Score=299.42 Aligned_cols=252 Identities=24% Similarity=0.433 Sum_probs=220.1
Q ss_pred ccCccccCCCcEEEeccCCCCEEEeecCCCC--------C-------CCcccccccccCCCceeEEEEEecCCCCCEEEE
Q 003271 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------D-------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (835)
Q Consensus 497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~--------~-------~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl 561 (835)
+....+.+...++|.|-.|..|++|-..... . ..+......+.. .-...+.+.||.++|+.+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~---~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDD---SSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcccc---CCceeEEeecCCCceeee
Confidence 4455566667799999999999999444211 0 011112222222 223455588999999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCC
Q 003271 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641 (835)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~ 641 (835)
.|+|+.++|++++.|++|++|++.+..++..+++|..+|+++.|+|.|-+|||++.|++.++|..+.. .+++.+.+|-+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghls 536 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLS 536 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999974 46999999999
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718 (835)
Q Consensus 642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l 718 (835)
.|.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.++ +.+++|+|+|.+|++|+.|+.|.+||+.+++.+..+
T Consensus 537 DV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 537 DVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred ccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 999999999965 7789999999999999999999999755 899999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271 719 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 719 ~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~ 753 (835)
.+|.+.|.++.|+.+|..|++++ |++|++||+...
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999 999999998754
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.5e-30 Score=290.00 Aligned_cols=317 Identities=19% Similarity=0.274 Sum_probs=264.2
Q ss_pred cccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC--EEEEE
Q 003271 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATG 573 (835)
Q Consensus 496 ~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~--~Lasg 573 (835)
++...++++...++++|+.|+.+++|..... .....++||.+.|.++.|.|+-. +|++|
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg 167 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKNG-------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASG 167 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeCC-------------------EEEEEecCCCceEEEEEeCCccchhheeec
Confidence 3345556677789999999999999944333 45788999999999999999765 48999
Q ss_pred eCCCeEEEEEcCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC----------------------
Q 003271 574 GHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------------------- 630 (835)
Q Consensus 574 s~Dg~I~VWd~~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~---------------------- 630 (835)
..|+.|++||+.+... +.++..|...|++++|++|+..+++++.|..|.|||+.+.+
T Consensus 168 ~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 168 ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG 247 (775)
T ss_pred CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence 9999999999985544 77788999999999999999999999999999999873111
Q ss_pred --------------------------------------------------------------------------------
Q 003271 631 -------------------------------------------------------------------------------- 630 (835)
Q Consensus 631 -------------------------------------------------------------------------------- 630 (835)
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence
Q ss_pred ------------------c----------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----e-
Q 003271 631 ------------------Y----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----G- 677 (835)
Q Consensus 631 ------------------~----------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~----~- 677 (835)
. ....+.+|...|.+++...+| .+|++|+.|.++++|.++++.+. .
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~ 406 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQ 406 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhh
Confidence 0 011345688888888855554 58999999999999988544322 1
Q ss_pred --EeecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE-----EE----EEcCCCCCeEEEEEcCCCCEEEEEe-CCe
Q 003271 678 --VFKSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-----RL----KLQGHKNQVHSVCWNTSGEYLASVS-DEL 744 (835)
Q Consensus 678 --~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~-----i~----~l~~h~~~I~sl~fspdg~~Lasgs-Dg~ 744 (835)
.+...+.+++++..+ ..|++++.|.++++|++...+. +. ....|...|.|++++|+..+|++|+ |.+
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 223457888886655 5677899999999999986211 11 2345999999999999999999999 999
Q ss_pred EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271 745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 823 (835)
Q Consensus 745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La 823 (835)
.+||++... ....++.+|...|+++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|+
T Consensus 487 aKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qli 563 (775)
T KOG0319|consen 487 AKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLI 563 (775)
T ss_pred eeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEE
Confidence 999999966 889999999999999999999999999999999999999999999 7889999999999999999999
Q ss_pred EEECCCcEEEeC
Q 003271 824 SASHDKCVKIWK 835 (835)
Q Consensus 824 Sgs~DG~V~IWd 835 (835)
+|+.||-|+||+
T Consensus 564 S~~adGliKlWn 575 (775)
T KOG0319|consen 564 SAGADGLIKLWN 575 (775)
T ss_pred eccCCCcEEEEe
Confidence 999999999996
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=6e-32 Score=283.45 Aligned_cols=276 Identities=23% Similarity=0.423 Sum_probs=237.0
Q ss_pred CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (835)
Q Consensus 481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s 560 (835)
....+.|.+++ +.|.+|+..+.+.+| .+..|.-..++.+|..+|.+
T Consensus 98 ~V~~v~WtPeG---------------RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~Vr~ 143 (464)
T KOG0284|consen 98 PVNVVRWTPEG---------------RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPVRT 143 (464)
T ss_pred ceeeEEEcCCC---------------ceeEeecccccEEEe-------------------cCceeeHHHHhhhhccccee
Confidence 34566777766 788999999999999 34555556678899999999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC
Q 003271 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (835)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h 639 (835)
+.|+++|.++++|+.+|.|++|+..-. .++.+.. |...|++++|+|+...|++++.||+|+|||....+. .+.+.+|
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GH 221 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGH 221 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccC
Confidence 999999999999999999999997543 3444444 558999999999999999999999999999987664 6778999
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 716 (835)
Q Consensus 640 ~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~ 716 (835)
.-.|.+++|+|.. .+|++++.|..|++||.+++.|+.++. ..|..+.|++++++|++++.|..+++||+++.+.+.
T Consensus 222 gwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 222 GWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF 300 (464)
T ss_pred CCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence 9999999999995 488899999999999999999987654 458899999999999999999999999999999999
Q ss_pred EEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 717 KLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 717 ~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
.+.+|...|+++.|+|-. .+|++|+ ||.|..|.+...+ .....-..|...|++++|+|-|..|++|+.|.++++|.
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999999999999965 4556666 9999999998442 22223346889999999999999999999999999997
Q ss_pred c
Q 003271 795 M 795 (835)
Q Consensus 795 l 795 (835)
-
T Consensus 379 r 379 (464)
T KOG0284|consen 379 R 379 (464)
T ss_pred c
Confidence 4
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=8.4e-32 Score=276.48 Aligned_cols=269 Identities=22% Similarity=0.387 Sum_probs=233.5
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
+..-......|+|+.+. ...+++|..|.+|+|||..+..+...+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.
T Consensus 190 inc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 190 INCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred ecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence 33334456779999995 4579999999999999999999999999999999999994 5699999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEee---cCceEEEEecCCCEEEEEEcC
Q 003271 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK---SGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~---~~i~~l~fsp~~~~ll~~s~d 701 (835)
+++. +.++.+|...|..+.|+. .++++|+.|.+|.+||+.....+ +.+. ..+..+.|+ .+++++++.|
T Consensus 266 tge~-l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD 339 (499)
T KOG0281|consen 266 TGEP-LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD 339 (499)
T ss_pred CCch-hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence 9874 889999999999999984 48889999999999999876532 2232 336666665 4599999999
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~ 780 (835)
.+|++|++.+.+++.++.+|...|-|+.+ .|+++++|+ |.+|++||+..+ .|+..+.+|..-|.++.|. .+.
T Consensus 340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cce
Confidence 99999999999999999999999998886 589999999 999999999998 8999999999999999994 557
Q ss_pred EEEEEcCCeEEEEEcCCCc---------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 781 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 781 L~sgs~dg~I~IwDl~~~~---------~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|++|+.||+|+|||+..+. ++ .+..|.+.|..+.|. ...|++++.|.+|.|||
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 9999999999999997654 22 567899999999985 56799999999999997
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=270.55 Aligned_cols=277 Identities=24% Similarity=0.436 Sum_probs=247.2
Q ss_pred ccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 003271 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (835)
Q Consensus 495 ~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs 574 (835)
.++..+.+.+...++++++.|.+|++|+...+ ...+.++||++.|.+|+|+..|++||+++
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEecC
Confidence 34445556667788999999999999944332 33667899999999999999999999999
Q ss_pred CCCeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 575 HDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 575 ~Dg~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
.|-.+.+||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++. ++.++.+|..-|..+..+.||.
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCee
Confidence 999999999987 67788888999999999999999999999999999999999875 6999999999999999999975
Q ss_pred cEEEEEeCCCcEEEEECCCCeeee---EeecCceEEEEecCC---------------CEEEEEEcCCcEEEEECCCCeEE
Q 003271 654 DLLCSCDNNSEIRYWSINNGSCAG---VFKSGATQMRFQPRL---------------GRILAAAIENYISILDVETQVCR 715 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s~~~~~---~~~~~i~~l~fsp~~---------------~~ll~~s~dg~I~IwDl~t~~~i 715 (835)
++++|+.|.+|++|-+.++.|.. .+...+.+++|-|.. ..+.+++.|++|++||+.++.++
T Consensus 249 -i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 249 -IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred -EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 99999999999999999986544 444557788876641 37888999999999999999999
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 716 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
.++.+|.+.|..++|+|.|+||+++. |++++|||+++. .|.+.+..|..-++++.|+.+.+++++|+-|-++++|.
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 99999999999999999999999999 889999999998 89999999999999999999999999999999999997
Q ss_pred c
Q 003271 795 M 795 (835)
Q Consensus 795 l 795 (835)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.6e-30 Score=250.44 Aligned_cols=279 Identities=18% Similarity=0.337 Sum_probs=241.2
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
.+.+.+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEee---cCceEEEEecCCCEEEEEEc
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK---SGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~--~~~~~~~---~~i~~l~fsp~~~~ll~~s~ 700 (835)
+.+++. .+.+.+|...|+.+.|+.+. .++++|+.|..+++||.++. +++..+. .++.++.+. +..|++|+.
T Consensus 88 V~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV 163 (307)
T ss_pred cccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence 999885 89999999999999999885 58899999999999999865 3444443 456666554 568999999
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCce--EEEEEeCC
Q 003271 701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPT 777 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V--~sv~fspd 777 (835)
||+++.||++.+.....+. ..+|+|++|+++++.+++++ |++|++.|-.++ +.+..+.+|.+.- ..|++...
T Consensus 164 DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred CCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence 9999999999998776664 45899999999999999998 999999999998 7777888876543 45678888
Q ss_pred CCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC-eeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 778 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 778 g~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~-V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
..++++|+.||.|++||+.+...+ .+..|... |.+++++|.-..|+++.. +.+.+|
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 889999999999999999999888 56666666 789999998777777654 344455
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5e-30 Score=280.22 Aligned_cols=279 Identities=22% Similarity=0.411 Sum_probs=254.6
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
.+..|+..|.|+.|+|...+++++-..|.|.|||.++...++.+.-...+|.+..|-...+++++|+.|..|+||+..+.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 44568999999999999999999999999999999999999999988999999999999999999999999999999998
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeecC---ceEEEEecCC-CEEEEEEcCCcE
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKSG---ATQMRFQPRL-GRILAAAIENYI 704 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~~---i~~l~fsp~~-~~ll~~s~dg~I 704 (835)
+. +..|..|.+.|.||+.||... +++++++|-.|++||.+.. .|..+|.++ +.+++|.|.+ +.+++++.|++|
T Consensus 88 ek-V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 88 EK-VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred ee-eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 86 899999999999999999976 5669999999999999865 567777766 8899999975 678899999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCC--CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg--~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
+||.+....+..++++|...|.|+++-+.| .||++|+ |.+|+|||..+. .|+.++.+|...|..+.|+|.-+.|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcEE
Confidence 999999999999999999999999998755 6899999 789999999988 8999999999999999999999999
Q ss_pred EEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 782 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
++|+.||+|+||+..+.+.. .+.-.-..|+||+-.+.++.++.|.++|.|.|
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999988876 45555678999999998889999999888754
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=281.11 Aligned_cols=308 Identities=21% Similarity=0.277 Sum_probs=258.2
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
--.++.|..|+.|++|....+ ....++.||...|+++.|+..|..|++|+.|+.|.|||+-
T Consensus 77 ~l~lAVGYaDGsVqif~~~s~-------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 77 ILLLAVGYADGSVQIFSLESE-------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV 137 (888)
T ss_pred cceEEEEecCceEEeeccCCC-------------------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec
Confidence 356799999999999922211 3466788999999999999999999999999999999998
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-----------------------------------
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------------------- 630 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~----------------------------------- 630 (835)
...-...+.+|.+.|+...|..+.++|++.+.|+.|++||+++..
T Consensus 138 ~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 138 GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence 878888888888888888888777888888888888888874211
Q ss_pred --------------------------------------------------------------------------------
Q 003271 631 -------------------------------------------------------------------------------- 630 (835)
Q Consensus 631 -------------------------------------------------------------------------------- 630 (835)
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence
Q ss_pred -------------------------------------c--------------e---------------eEEeecCCCCeE
Q 003271 631 -------------------------------------Y--------------S---------------LRTFTGHSTTVM 644 (835)
Q Consensus 631 -------------------------------------~--------------~---------------~~~~~~h~~~V~ 644 (835)
. . ...+.+|...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 0 0 012345777888
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~ 723 (835)
+++++.+. .++++ +..+.|++|+..+.+|++++.+. +.+..|.|.+.++++|...|.+.+||+.+...+.++..|.+
T Consensus 378 sl~vS~d~-~~~~S-ga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg 455 (888)
T KOG0306|consen 378 SLCVSSDS-ILLAS-GAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG 455 (888)
T ss_pred EEEeecCc-eeeee-cCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence 88888773 24444 44789999999999999999876 67788999999999999999999999999999989999999
Q ss_pred CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-----cceEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-----GECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-----~~~i~----~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
.|.+++.+||++.+++++ |.+|++||+.--.. .+.+. ..-.-...|.++.++||+++|+++--|.+|+||
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 999999999999999999 99999999753211 11110 111235789999999999999999999999999
Q ss_pred EcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 794 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 794 Dl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
-+++-+.. .+.+|.-+|.||.++||+++++|||.|.+|+||
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 99998876 899999999999999999999999999999999
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.7e-30 Score=283.18 Aligned_cols=279 Identities=20% Similarity=0.384 Sum_probs=253.1
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
..+.||...|.++++|.|...+++|+ .+.|+||+.++.++++++.. +.+.+..|.|.++++++|...|.+.|||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 35679999999999999988888776 57899999999999999964 4899999999999999999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Cee----------eeEeecCceEEEEecCCC
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC----------AGVFKSGATQMRFQPRLG 693 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-----~~~----------~~~~~~~i~~l~fsp~~~ 693 (835)
... +.+...|.+.|++++.+|++.. +++|+.|.+|++||..- +.. .-.+...+.++.++|++.
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 764 6777799999999999999875 55999999999999742 111 112345699999999999
Q ss_pred EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
+++++--|++|+||-+.+-+....+.||.-+|.|+..+||++.+++|+ |..|+||-+.-| .|-..+.+|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999888 8999999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 773 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|.|....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.++++++.|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999998887776 8899999999999999999999999999999995
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=261.14 Aligned_cols=283 Identities=19% Similarity=0.248 Sum_probs=246.1
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
.+..+..|++.|++|+.+|+.++++||+.|....||++.++.....+.+|.+.|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCc
Q 003271 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~ 703 (835)
.++.. ...+...-..|.-+.|||.+. +|++|+.||.|.+|.+.+....+.+.++ +++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98875 445545667889999999754 8889999999999999997777777654 777789999999999999999
Q ss_pred EEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--------cCCC---ceE
Q 003271 704 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTGN---KFH 770 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--------~~~~---~V~ 770 (835)
|++|+..++.++..+.. ......++.++..+..++.|+ ++.+++.+..++ +.+.... .+.. .|-
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 99999999999988874 334677889999999999998 889998888777 4444433 2233 344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 771 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++.++..-+..++|+-||+|.|||+...++.....|...|..+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 45556666788999999999999999999999999999999999998 78999999999999997
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.7e-29 Score=248.80 Aligned_cols=279 Identities=19% Similarity=0.248 Sum_probs=238.2
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
.+.||..+|+-+.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+||..+.+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEEECCC-------CeeeeEee---cCceEEEEecCCCEE
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINN-------GSCAGVFK---SGATQMRFQPRLGRI 695 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs----~Dg~I~iwDl~s-------~~~~~~~~---~~i~~l~fsp~~~~l 695 (835)
+. +..+. ...+|..+.|+++|+.++++.. ..+.|.++|++. .++...+. ..++.+.|.|.+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 85 44444 5678999999999886665542 357899999983 34444444 448888999999999
Q ss_pred EEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 696 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++ |.+-++||+.+. .++.++.. ..+|++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999997 44555577999999999999999999999 999999999987 67777664 67899999
Q ss_pred EeCCCCEEEEEEcCCeEEE--EEcCCCc-------------EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 774 FHPTFPSLLVIGCYETLEL--WNMTENK-------------TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~I--wDl~~~~-------------~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
++|...+++.|+.....-| =+.+.++ .-.+.+|-++|++++|+|+|+..++|+.||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999998888877653333 2233332 12678999999999999999999999999999984
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.2e-29 Score=285.06 Aligned_cols=278 Identities=27% Similarity=0.432 Sum_probs=240.0
Q ss_pred ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC
Q 003271 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (835)
Q Consensus 497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D 576 (835)
+....+....+++++++.|+.+++|......+ ...+.+.+|...|.+++|+||++++++++.|
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEecCC
Confidence 33344555557899999999999995422210 2344558999999999999999999999999
Q ss_pred CeEEEEEc-CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271 577 KKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 577 g~I~VWd~-~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l 655 (835)
++|+|||+ ..+..++++++|...|++++|+|+++++++|+.|++|+|||+++++ +++.+.+|...|.+++|++++. +
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~ 302 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-L 302 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-E
Confidence 99999999 5668999999999999999999999999999999999999999855 5899999999999999999987 5
Q ss_pred EEEEeCCCcEEEEECCCCe--eeeEee----c-CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCe---
Q 003271 656 LCSCDNNSEIRYWSINNGS--CAGVFK----S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV--- 725 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~~--~~~~~~----~-~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I--- 725 (835)
+++++.|+.|++||+.++. ++..+. . .+..+.|+|++.++++++.|+.+++||+..+.++..+.+|...+
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI 382 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence 6677889999999999998 444443 2 46889999999999999999999999999999999999988753
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEEcC
Q 003271 726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 796 (835)
Q Consensus 726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs--~dg~I~IwDl~ 796 (835)
.+..+++.+.++++++ |+.|++||+.++ ..+..+.+| ...+..+.+++...++++++ .|+.|++|...
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 3445578999999999 999999999986 677778888 88899999999999999998 67899999754
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.7e-29 Score=271.48 Aligned_cols=272 Identities=21% Similarity=0.288 Sum_probs=244.4
Q ss_pred cCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (835)
Q Consensus 498 ~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg 577 (835)
-++.+.+.+.++.++-..+.|.+|.. .+-..++.+.-..-+|.++.|-...+++++|+.|.
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWny-------------------etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~ 77 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNY-------------------ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDM 77 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEec-------------------ccceeeeeeeecccchhhheeeeccceEEEecCCc
Confidence 34556777889999999999999933 23345666777778899999999999999999999
Q ss_pred eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 003271 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 657 (835)
.|+||+..+++.++.++.|.+.|.||+.+|.-.+++|+|.|-+|++||.+..-.+..++.+|...|++++|+|....-++
T Consensus 78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred eEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence 99999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCC--CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 003271 658 SCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 732 (835)
Q Consensus 658 sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~--~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp 732 (835)
+++-|++|++|.+.+..+..++.+ ++.++.+-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 999999999999999888887775 49999998865 4899999999999999999999999999999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271 733 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 791 (835)
Q Consensus 733 dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~ 791 (835)
.-.+|++|+ ||+|+||+..+- +...++.-....+++++-.+.+..+++|...|.|.
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred CCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 999999999 999999998876 55666777788999999999888888887777554
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=7.8e-28 Score=252.90 Aligned_cols=265 Identities=30% Similarity=0.539 Sum_probs=234.0
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..++++++.|+.+.+|...... ....+..|...|.++.|++++++|++++.||.|++||+.
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3688999999999999443221 345667899999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+. ...+..|...|.+++|+|++. ++++++.|+.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcE
Confidence 9888888989999999999999988899888899999999996553 666778999999999999854 67677779999
Q ss_pred EEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 666 RYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
++||+++++.+..+. ..+.++.|++++..+++++.++.|++||+++++.+..+..|...+.+++|++++.++++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 999999887776665 3588999999999999999999999999999998888878999999999999999999999
Q ss_pred CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 742 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
|+.|++||+.++ ..+..+..|...+.+++|++++.+|++++.|+.|++|+
T Consensus 240 ~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999876 66777778888999999999999999999999999996
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9.2e-30 Score=252.01 Aligned_cols=278 Identities=21% Similarity=0.264 Sum_probs=247.3
Q ss_pred EecCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 550 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
+..||+.+|..++||| +|-+|++++.|+.=.+-+-+++.-+.+|.+|.+.|++..++.+...-++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 3469999999999986 8889999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEeecCceEEEEecCCCEEEEEEcCC
Q 003271 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKSGATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----~~~~~~~i~~l~fsp~~~~ll~~s~dg 702 (835)
.++.. +..+. |..-|.+++|+.|.++ |++|+.+..++|||++..+. +.-..++|..+.|......|++.+.|+
T Consensus 89 ~tgde-lhsf~-hkhivk~~af~~ds~~-lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VTGDE-LHSFE-HKHIVKAVAFSQDSNY-LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhh-hhhhh-hhheeeeEEecccchh-hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98875 55554 7888999999999764 55999999999999987543 233446689999999999999999999
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~ 782 (835)
.|++||.+++..+.++. ...+|+++.++++|++|..+..+.|++||..+- ..+..+.. ...|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence 99999999999999887 678999999999999999888889999999886 55555543 56788999999999999
Q ss_pred EEEcCCeEEEEEcCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 783 VIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 783 sgs~dg~I~IwDl~~~~~~~--l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|+.|..++.||..++..+. ..+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 99999999999999999883 379999999999999999999999999999993
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.3e-30 Score=261.59 Aligned_cols=278 Identities=23% Similarity=0.362 Sum_probs=244.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec--------cCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~--------~h~~~V~sv~fspdg~~Latgs~Dg~I~IW 624 (835)
+...-+.|..|||||.||++|+.||.|.|||..+|+..+.++ -+...|.|+.|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445568999999999999999999999999999998775543 478899999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcC
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~d 701 (835)
.+.++.+..+.-..|...|+|+.|+.|+..++ +++.|.++++.-+++|++++.+.++ ++...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99999864444458999999999999987665 8999999999999999999999876 7788999999999999999
Q ss_pred CcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEee---cCCCceEEEEE
Q 003271 702 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVF 774 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~---~~~~~V~sv~f 774 (835)
|+|++|+..+.+|+.+|+. ...+|.++...|.+ ..+++|. .++|+|.++.. ..++++. ..++.+.+++.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 45578888777754 5566666 88999999864 3555554 34567889999
Q ss_pred eCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 775 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 775 spdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|.|.++++.+.|+.++.|.+.+|++. .+.-|+..|..++-+|..++||+-+.||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999987 7788999999999999999999999999999996
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=266.79 Aligned_cols=266 Identities=20% Similarity=0.391 Sum_probs=227.9
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
+..+++|..|.+|++|+.. .....+.+.||++.|.|+.|. .+.|++|+.|.+|+|||++
T Consensus 207 D~kiVSGlrDnTikiWD~n-------------------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKN-------------------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred chhhhcccccCceEEeccc-------------------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence 3678999999999999332 234567788999999999995 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg 663 (835)
+++++.++-+|.+.|..+.|+. .+++|++.|.+|.|||+..+.. +.+.+.+|...|..+.|+.. ++++++.|.
T Consensus 266 tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDR 340 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDR 340 (499)
T ss_pred CCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCc
Confidence 9999999999999999999974 4999999999999999987653 34678899999999999843 888999999
Q ss_pred cEEEEECCCCeeeeEeecCceEEE-EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 664 EIRYWSINNGSCAGVFKSGATQMR-FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~~~i~~l~-fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
+|++|++.++++++++.++-..++ ....+..+++|+.|++|++||++.|.++..++||+.-|.|+.|+ .+.|++|.
T Consensus 341 TikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY 418 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAY 418 (499)
T ss_pred eEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccc
Confidence 999999999999999987755544 34456778889999999999999999999999999999999995 56688888
Q ss_pred CCeEEEEEcCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 742 DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~------~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
||+|+|||+..+... .|+..+..|.+.|..+.|. ...|++++.|.+|.|||..++...
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 999999999876432 3667777889999999994 457999999999999999876554
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=265.49 Aligned_cols=280 Identities=20% Similarity=0.355 Sum_probs=242.9
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
...+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 44577899999999999998899999999999999987666 6788888899999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCc
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~ 703 (835)
++.... ..++.+|.+.|+++.|.-.... +++|+.|.+|++||+.+..|.+++-.. +..|+.. ...++++..|++
T Consensus 248 vd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 248 VDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK 323 (459)
T ss_pred ccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence 998764 7899999999999999876443 789999999999999999998876544 3344443 566788889999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC----CCceEEEEEeCCC
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF 778 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~----~~~V~sv~fspdg 778 (835)
|++||+++..++.....+. .|+++..+.++..|.+++ |+++.++|+++. .....+... ...++.+.|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999988655 999999999999999999 999999999997 455554432 2347889999999
Q ss_pred CEEEEEEcCCeEEEEEcCCCcEE-Eecc-CC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 779 PSLLVIGCYETLELWNMTENKTL-TLSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 779 ~~L~sgs~dg~I~IwDl~~~~~~-~l~~-h~-~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|+++|+.||.|+||++.++++. .+.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999987 3332 22 3699999999999999999999999994
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=5.6e-28 Score=245.47 Aligned_cols=264 Identities=20% Similarity=0.354 Sum_probs=228.3
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
.++++|+.|..|-+|...++.+ .+-.+++|+++|..+.|.+|+..|++++.|++|+.||+++
T Consensus 60 s~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred CeEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 6899999999999995444422 2456679999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
++.++.+++|...|..+.-+.-| .++.+++.|++++|||+++... ++++. ..-.++++.|...+..++ +|+-|+.|
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~i 198 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDI 198 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEeccccccee-eccccCce
Confidence 99999999999999999854444 4677889999999999997553 44443 356799999998877655 88999999
Q ss_pred EEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCC----CeEEEEEcCCCC----CeEEEEEcCCC
Q 003271 666 RYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHKN----QVHSVCWNTSG 734 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t----~~~i~~l~~h~~----~I~sl~fspdg 734 (835)
++||++.......+.++ |+.+..+++|.++++-+.|.++++||++. .+++..+.+|.. ....++|+|++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 99999999999888755 89999999999999999999999999984 356777777543 44578999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 735 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 735 ~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
+++.+|+ |..+++||.... .++..+.+|.+.|+++.|+|..++|.+++.|.+|++=.
T Consensus 279 ~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9999999 999999999876 78999999999999999999999999999999998743
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.5e-28 Score=240.69 Aligned_cols=280 Identities=18% Similarity=0.264 Sum_probs=245.1
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEe
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD 625 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~--~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWD 625 (835)
+.+.+|..+|.+++|+.+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567999999999999999999999999999999998776554 34689999999999884 67899999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCCc
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~ 703 (835)
++.++. ........+ -.-+.|+|+|+ .++.++.|..|.+.|.++.+..... +..+..++|+-+++.++.....|.
T Consensus 94 ~r~~k~-~~~i~~~~e-ni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKC-TARIETKGE-NINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcE-EEEeeccCc-ceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998875 333332333 34578999987 4557888999999999998877554 456888999977777777777799
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~ 782 (835)
|.|......+++..+..|.....||.|+|+|+|+++|+ |..+.+||+... .|++.+..+..+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999876 88899999999999999999999999
Q ss_pred EEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC---------CcEEEe
Q 003271 783 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 834 (835)
Q Consensus 783 sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D---------G~V~IW 834 (835)
+++.|..|-|=++++|..+....++++...++|+|...+||-+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988865 567765
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.9e-27 Score=241.84 Aligned_cols=282 Identities=21% Similarity=0.295 Sum_probs=239.4
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 623 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~--Dg~I~I 623 (835)
+..+.++.-.+.|+++.|+++|.+|++++.|..|+|||..+++.++++..+.-.|..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344555667788999999999999999999999999999999999999988889999999887777777776 889999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-CceEEEEecCCCEEEEEEcCC
Q 003271 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-GATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-~i~~l~fsp~~~~ll~~s~dg 702 (835)
.++.++++ ++.+.||...|.+|+.+|-++ .+++++.|++|++||++..+|...+.. +...++|+|.|-.++++...+
T Consensus 85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence 99999886 999999999999999999975 677999999999999999888877764 456778999988888888878
Q ss_pred cEEEEECCCC--eEEEEEc---CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc---eEEEE
Q 003271 703 YISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 773 (835)
Q Consensus 703 ~I~IwDl~t~--~~i~~l~---~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~---V~sv~ 773 (835)
.|++||++.- .+..++. +.....+.+.|+|||++|+.++ .+.+++.|.-+| ..+.++..+... ...++
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeEE
Confidence 9999999853 3333333 3467889999999999999888 889999999988 456666554433 37889
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 774 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~-h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
|.|++.+|++|+.||+|.+|++++++.+ .+.+ +...+.++.|+|...++++++ ..+.+|
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 9999999999999999999999999887 5666 789999999999877777765 467777
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.8e-28 Score=274.78 Aligned_cols=280 Identities=21% Similarity=0.375 Sum_probs=247.3
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~ 630 (835)
+...+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...+|++|+.|..|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEE
Q 003271 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISIL 707 (835)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~Iw 707 (835)
++.++.+|-+.|..+.|++.-. .|+++++|-+|+||+..+.+|+..+.++ +.|..|+|..+.+++++.|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 5889999999999999999876 5559999999999999999999999877 7888899999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271 708 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 757 (835)
Q Consensus 708 Dl~t~-----------------------------~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~ 757 (835)
|+..- ...+.+.||...|.-++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 98521 11245678999999999999999999999 88999999976532 3
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 758 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 758 ~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+...+.+ ++....+..+.++.+|..+++++|- |+-+.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEE
Confidence 56677899999999999999999999999999999999998888 5555567899999999998887665 5555554
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3e-27 Score=237.23 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=218.2
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEe-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l-~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
..++++++.|..|++|...+ +.++.....+ .+|+..|.+++|+|.|++||+|+.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 45899999999999993332 1224444444 479999999999999999999999999999976
Q ss_pred C--CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 585 ~--t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
. +++++.++++|...|.|++|+++|++|||++.|+.|-||.+.... .+...+..|...|..+.|+|.. .+|++++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEec
Confidence 5 467889999999999999999999999999999999999998543 3567889999999999999984 4899999
Q ss_pred CCCcEEEEECCC---CeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 003271 661 NNSEIRYWSINN---GSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 734 (835)
Q Consensus 661 ~Dg~I~iwDl~s---~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg 734 (835)
.|.+|++|+-.. -.++..+.++ +.+++|++.|..+++++.|++|+||-..+.-. .-|...++.+.|. +
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~-~- 243 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD-N- 243 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec-c-
Confidence 999999998872 3566666644 78899999999999999999999998663211 1278899999998 4
Q ss_pred CEEEEEe-CCeEEEEEcCCCCC---cc-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEEcC
Q 003271 735 EYLASVS-DELVRVWSIGSGSK---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 735 ~~Lasgs-Dg~I~IwDl~t~~~---~~-~i~~l~~~~~~V~sv~fspd-g~~L~sgs~dg~I~IwDl~ 796 (835)
..|++++ |+.|++|....... .. ....-..|...|+++.|.|. ...|++++.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4566666 99999998764311 11 12234568889999999995 6789999999999999874
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=8.2e-28 Score=248.44 Aligned_cols=277 Identities=18% Similarity=0.291 Sum_probs=238.5
Q ss_pred CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003271 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (835)
Q Consensus 499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~ 578 (835)
+.++++.+.++++|+.|+++++|+...+ ....++.||...|..+++|+-..||++++.|+.
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 5566788899999999999999944333 345678899999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
|+.||++..+.++.+.+|-..|.|++.+|.-..|+||+.|.+++|||+++.. .+..+.+|..+|..+.+.|.+.. +++
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-vit 294 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-VIT 294 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-eEE
Confidence 9999999999999999999999999999999999999999999999999865 58999999999999999987664 559
Q ss_pred EeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271 659 CDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 735 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~ 735 (835)
|+.|++|++||++.++....+.. .+.+++.+|....+++++. ..|+-|++..+..+..+.+|...|.++..+.||-
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-ccceeccCCccchhhccccccceeeeeeeccCce
Confidence 99999999999999988776654 4888999998776666655 5689999999999999999999999999988887
Q ss_pred EEEEEeCCeEEEEEcCCCCCcceEEEeec-----CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 736 YLASVSDELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 736 ~LasgsDg~I~IwDl~t~~~~~~i~~l~~-----~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
+++.+..|.+.+||.+++.......+... ....|.+.+|...+..|+++..|.+|++|.-++
T Consensus 374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 66555588999999999854333333221 245689999999999999999999999997544
No 54
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.2e-28 Score=245.19 Aligned_cols=286 Identities=24% Similarity=0.387 Sum_probs=240.2
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC------------------CeEEEEeccCCCCeEEEEECC
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP 607 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~i~~l~~h~~~V~sv~fsp 607 (835)
.|...+..|..++.+.+|++||.++|+|+.|..|+|.|++. --.++++..|.+.|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 35566789999999999999999999999999999999861 135678889999999999999
Q ss_pred CCCEEEEEECCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------e
Q 003271 608 SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------K 680 (835)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~ 680 (835)
...+|++|+.|++|++||+...... .........+|.+|.|+|.|+ +++.|..-.++++||+++..|.... .
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999999999999864321 111223456899999999988 5557887889999999998876543 3
Q ss_pred cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-CC-CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271 681 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 757 (835)
Q Consensus 681 ~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~-~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~ 757 (835)
+.++++.+++.++..++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..|++|.+.++ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 5699999999999999999999999999999999988764 44 5789999999999999988 999999999998 7
Q ss_pred eEEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271 758 CIHELSCTGN-----KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 758 ~i~~l~~~~~-----~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG 829 (835)
++.++.+.+. --+...|+....+++.-... +.+.-||.++...+ .-.+|.+.+..+.-+|.+..+++|++|-
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 7877765421 12445677778887776654 58999999988766 3459999999999999999999999999
Q ss_pred cEEEeC
Q 003271 830 CVKIWK 835 (835)
Q Consensus 830 ~V~IWd 835 (835)
++++|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999993
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.9e-27 Score=246.68 Aligned_cols=276 Identities=22% Similarity=0.333 Sum_probs=234.1
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~ 629 (835)
-|.+-|.++... +++|++|++||.++|||. .|+.+..+.+|.++|.+++|.-. ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 477888888877 679999999999999996 57889999999999998888543 335999999999999999876
Q ss_pred Cce---eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------------------------eeeEee-
Q 003271 630 DYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------------------------CAGVFK- 680 (835)
Q Consensus 630 ~~~---~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-------------------------~~~~~~- 680 (835)
... +....+|...|.+++..+++. .+++|+.|..|.||+..+.. .+..+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 542 234459999999999999976 77799999999999932210 111122
Q ss_pred --cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271 681 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 757 (835)
Q Consensus 681 --~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~ 757 (835)
..+..+.|++ ...+++++.|.+|+.||+.++.++..+. ....+.|+..+|..++|++|+ |..|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 3477888988 6889999999999999999999988887 467899999999999999999 9999999999987767
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEEcCCCc-EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 758 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 758 ~i~~l~~~~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl~~~~-~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
....+.+|.+.|.+|.|+|...+ |++++.|+++++||+++.+ .+ .+.+|.+.|.++.|. ++.+|++|+.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 88899999999999999998765 6778889999999999877 44 888999999999996 56799999999999997
Q ss_pred C
Q 003271 835 K 835 (835)
Q Consensus 835 d 835 (835)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 56
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.6e-26 Score=282.04 Aligned_cols=284 Identities=14% Similarity=0.226 Sum_probs=223.9
Q ss_pred ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeC
Q 003271 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGH 575 (835)
Q Consensus 497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~ 575 (835)
+....++..+.++++|+.|+.|++|........ + .... ..+..+. +...|.+++|++ ++.+||+++.
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeC
Confidence 344555666789999999999999954321000 0 0000 0112222 346799999987 4789999999
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ 654 (835)
||+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|+|||+.++.. +..+..+ ..|.++.|++....
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCC
Confidence 99999999999999999999999999999997 789999999999999999987653 5555544 67999999765556
Q ss_pred EEEEEeCCCcEEEEECCCCe-eeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC------CeEEEEEcCCCCC
Q 003271 655 LLCSCDNNSEIRYWSINNGS-CAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQ 724 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~-~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t------~~~i~~l~~h~~~ 724 (835)
++++|+.|+.|++||+++.+ .+..+. ..+..+.|. ++..+++++.|+.|++||++. ..++..+.+|...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 88899999999999998765 333333 458889997 678999999999999999974 3567889999999
Q ss_pred eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 725 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 725 I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~--------i--~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
+.+++|++++.+|++|+ |+.|+||+......... + .....+...|.+++|++++..|++++.+|.|+||
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999999999 99999999865421100 0 0112345679999999999999999999999999
Q ss_pred Ec
Q 003271 794 NM 795 (835)
Q Consensus 794 Dl 795 (835)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 96
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=232.34 Aligned_cols=266 Identities=22% Similarity=0.288 Sum_probs=231.5
Q ss_pred ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (835)
Q Consensus 500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (835)
..+....++..+.+.|.+|++|.... ...++++.+|...|..++.+.|...|++|+.|+.|
T Consensus 23 vryN~dGnY~ltcGsdrtvrLWNp~r-------------------g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 23 VRYNVDGNYCLTCGSDRTVRLWNPLR-------------------GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred EEEccCCCEEEEcCCCceEEeecccc-------------------cceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 33444557888889999999993322 24688899999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
.+||+++|+.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.. .++.++....+.|.+|... ++.|++
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIva 160 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVA 160 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEe
Confidence 999999999999999999999999999999999999999999999998654 3567788888999999987 447889
Q ss_pred EeCCCcEEEEECCCCeeeeE-eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeE--EEEEcCCCC
Q 003271 659 CDNNSEIRYWSINNGSCAGV-FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGE 735 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~-~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~--sl~fspdg~ 735 (835)
|+.||+++.||++.|..... +..+++++.|+++++..++++.|+.+++.|-.+++.+..+++|.+.-. .++++....
T Consensus 161 GS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 161 GSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred eccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 99999999999999987654 456799999999999999999999999999999999999999876543 457777888
Q ss_pred EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeE
Q 003271 736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETL 790 (835)
Q Consensus 736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~-V~sv~fspdg~~L~sgs~dg~I 790 (835)
.+++|+ ||.|++||+... ..+..+..+... +.++.++|.-..++++...+.+
T Consensus 241 hV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred eEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence 999999 999999999887 677778777777 8999999998888877765543
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=5.8e-27 Score=244.39 Aligned_cols=268 Identities=21% Similarity=0.346 Sum_probs=227.0
Q ss_pred CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC---EEEEEeCCCeEE
Q 003271 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAV 580 (835)
Q Consensus 504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~---~Lasgs~Dg~I~ 580 (835)
...+++.+|++|+.+++|.. .......+.||+++|.+++|..... .|++++.|.+++
T Consensus 113 ~~~~~IltgsYDg~~riWd~--------------------~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIWDL--------------------KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred ccCceEEEeecCCeeEEEec--------------------CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 34789999999999999932 2245778899999999888865333 599999999999
Q ss_pred EEEcCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC------------------------Cce
Q 003271 581 LWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYS 632 (835)
Q Consensus 581 VWd~~t~~~i----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~------------------------~~~ 632 (835)
+|..+.++.. ....+|...|-+|...+++..+++|+.|.+|.||+..+. +.+
T Consensus 173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred EEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 9988876543 344599999999999999999999999999999993211 124
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
+..+.+|..+|.++.|++. ..+++++.|.+|+.||+.++.++..+.+. ..++.++|....|++|+.|..|++||.+
T Consensus 253 ~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPR 330 (423)
T ss_pred eEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCC
Confidence 5678899999999999984 47889999999999999999988777654 8899999999999999999999999999
Q ss_pred CC---eEEEEEcCCCCCeEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 711 TQ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 711 t~---~~i~~l~~h~~~I~sl~fspdg~~-Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
++ -....+.+|.+.|.++.|+|...+ |++++ |+++++||+++.. ..+..+.+|...|.++.|... ..|++|+
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSGG 407 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSGG 407 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEecc
Confidence 75 455688899999999999997765 55566 9999999999873 488899999999999999754 4699999
Q ss_pred cCCeEEEEEcC
Q 003271 786 CYETLELWNMT 796 (835)
Q Consensus 786 ~dg~I~IwDl~ 796 (835)
.|.+|+|+...
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 99999998643
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-27 Score=236.53 Aligned_cols=275 Identities=21% Similarity=0.374 Sum_probs=227.8
Q ss_pred EEEEEeC--CCCEE-EEE-----eCCCeEEEEEcCCCeEEEEec--cCCCCeEEEEECCC-CCEEEEEECCCeEEEEecC
Q 003271 559 ESCHFSP--DGKLL-ATG-----GHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 559 ~sl~fSp--dg~~L-asg-----s~Dg~I~VWd~~t~~~i~~l~--~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~ 627 (835)
+++.||| ++++. |++ ...|++.|.++...+-+..+. .-.+.+.+|+|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788888 34332 222 136889999986444333332 34578999999996 5688999999999999988
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCC-CEEEEEEcCCc
Q 003271 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRL-GRILAAAIENY 703 (835)
Q Consensus 628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~-~~ll~~s~dg~ 703 (835)
....++..++.|...|.++.|++..+..+++++.|++|++|+......+.++.++ |....|+|.. +.++.++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 8888899999999999999999988888999999999999999999999999876 6667899975 66777888999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CE
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PS 780 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~ 780 (835)
+++||++..-....+..|...|.|+.|+.-. ..|++++ |+.|++||++.-+ ..+.++.+|+-.|..+.|+|.. ..
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence 9999999765555588899999999999854 5666777 9999999999875 5788899999999999999976 46
Q ss_pred EEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003271 781 LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 835 (835)
Q Consensus 781 L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~IWd 835 (835)
|++++.|-+++|||....... +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 778888889999998855533 6667888999999998 556999999999999996
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-27 Score=268.57 Aligned_cols=246 Identities=21% Similarity=0.325 Sum_probs=202.5
Q ss_pred eEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-------------------------------------
Q 003271 545 FTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------------------------- 586 (835)
Q Consensus 545 ~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------------------------------------- 586 (835)
......+. +|.+.|+|+.||+||+|||+||.|+.|+||.+..
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 34445566 9999999999999999999999999999997543
Q ss_pred -----------------------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe
Q 003271 587 -----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (835)
Q Consensus 587 -----------------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V 643 (835)
.+++..+.+|.+.|.+|.|+.+ .+|++++.|.+|++|++.... ++..|. |.+.|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfV 412 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFV 412 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCee
Confidence 0112334689999999999976 589999999999999999655 577776 99999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-
Q 003271 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG- 720 (835)
Q Consensus 644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~- 720 (835)
+||+|+|.++++|++|+-||.|+||++...+.+.-.. .-|++++|.|+|...++|+.+|.+++|+....+....+.-
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999999989999999999999999999887765443 4599999999999999999999999999998766554321
Q ss_pred -C------CCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCe
Q 003271 721 -H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYET 789 (835)
Q Consensus 721 -h------~~~I~sl~fspdg--~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv~fspdg~~L~sgs~dg~ 789 (835)
| ...|+.+.|.|.. ++|++..|..|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 1 2279999998754 3666666999999999776 5555555433 33466789999999999999999
Q ss_pred EEEEEcC
Q 003271 790 LELWNMT 796 (835)
Q Consensus 790 I~IwDl~ 796 (835)
|+||++.
T Consensus 570 VYiW~~~ 576 (712)
T KOG0283|consen 570 VYIWKND 576 (712)
T ss_pred EEEEeCC
Confidence 9999973
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=5.4e-28 Score=258.95 Aligned_cols=274 Identities=18% Similarity=0.306 Sum_probs=233.5
Q ss_pred ccCccccC-CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeC
Q 003271 497 SAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (835)
Q Consensus 497 s~~~~~~~-~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~ 575 (835)
++...+-. ...++.+++.|+.|++|..-++ ...++++.+|..+|.+++|+.+|..+++++.
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 33444444 5679999999999999944332 2468889999999999999999999999999
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ 654 (835)
|+.|++||+++|+++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++. +..+..|-+.|..+.|-+++..
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCce
Confidence 9999999999999999885 34578999999998 8899999999999999999874 7888899999999999999875
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCC---eEEEEEcCCC--CCe
Q 003271 655 LLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQGHK--NQV 725 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~--~~I 725 (835)
+++.++|+.++||+.+....+..+. ....++..+|.++++++-+.|+.|.+|.+... .....+++|. +.-
T Consensus 357 -FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 357 -FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred -EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 5588889999999999877665443 33678999999999999999999999987643 2334566765 345
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003271 726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN 794 (835)
Q Consensus 726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwD 794 (835)
..|.|||||.+|++|+ ||.+.+||.++. +.+..+..|...+..+.|+|.. ..+++++.+|.|++||
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTT---KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhh---hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 6789999999999999 999999999988 7888899999999999999976 4688899999999996
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-28 Score=252.99 Aligned_cols=278 Identities=17% Similarity=0.310 Sum_probs=235.1
Q ss_pred EEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
-+..+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 456778999999999999976 6799999999999999999999999999999999999976 6899999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEE-cC
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAA-IE 701 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s-~d 701 (835)
++.+ +++++.+ .+.+..|+-+..+ ..+++|+. .|.|||.....++..+.- .+.++.|+|....|++++ .|
T Consensus 136 ~~~~--p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDGP--PLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccCC--cceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 8864 4566554 3556777766553 47778865 789999988888877763 378999999887666655 89
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~ 780 (835)
+.|.+||++...++..+. -...-..|||+|.+..+++++ |..++.||++... ..+....+|.+.|.++.|+|.|..
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence 999999999998887665 345567899999777777787 8999999999764 577778899999999999999999
Q ss_pred EEEEEcCCeEEEEEcCCCcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 781 LLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 781 L~sgs~dg~I~IwDl~~~~~~~l~--~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+++|+.|.+|+||.++.+....+. .--..|.|+.|+.|.++|++|++|+.|++|+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999887765322 2335699999999999999999999999996
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.3e-27 Score=251.87 Aligned_cols=274 Identities=19% Similarity=0.281 Sum_probs=240.4
Q ss_pred CCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 555 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
.+.|.+++|+|...+ +|+.+ .-.|.||+..+....+++....+.|++++|..||++|++|...|.|+|||+.+ +..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 457999999996554 44443 46899999999888888888889999999999999999999999999999554 5568
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCC-EEEEEEcCCcEEEEEC
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLG-RILAAAIENYISILDV 709 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~-~ll~~s~dg~I~IwDl 709 (835)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++ +.+.+|+|..+ .+++|++||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998865455544 88999999866 6778999999999999
Q ss_pred CCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271 710 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 710 ~t~-~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg 788 (835)
+.. ..+.++. |..+|..+++-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999999773 45555556899999999999999999999999
Q ss_pred eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 789 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 789 ~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.|++||+.+.+.+.-....++|.+|+++|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999998877778899999999999999999999998754
No 64
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.1e-28 Score=245.02 Aligned_cols=271 Identities=20% Similarity=0.338 Sum_probs=233.2
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
.++++||.|+-|++|....+...+ ...+..-..+--|.++|.|++||.|...||+|+.||.|+||.+.+
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred ceEeeccccceeeeehhccchhhh-----------hhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 799999999999999665553322 222222334456788999999999999999999999999999999
Q ss_pred CeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 587 FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 587 ~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
|.+++.|. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+++. ++.+.+|.+.|+...|.++|.+++ +++.||+|
T Consensus 295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtv 372 (508)
T KOG0275|consen 295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SASSDGTV 372 (508)
T ss_pred chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-EecCCccE
Confidence 99999996 8999999999999999999999999999999999875 899999999999999999988555 89999999
Q ss_pred EEEECCCCeeeeEeecC-----ceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCCCE
Q 003271 666 RYWSINNGSCAGVFKSG-----ATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEY 736 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~~~-----i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg~~ 736 (835)
++|+.++.+|+.+|+.. +..+..-|.+ ..++++...++|+|.++. +..++.+.. ..+...+++.+|.|.+
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcE
Confidence 99999999999988743 5666666654 678888888999999986 566666653 3456778889999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
+++.+ |+.+++|.+.++ ..-+++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 452 iYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99988 999999999998 77788888999999999999999999999999999995
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.6e-27 Score=251.85 Aligned_cols=289 Identities=17% Similarity=0.249 Sum_probs=232.7
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe----EEEEe-ccCCCCeEEEEECCCCCEEEEEECC
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTL-EEHTQWITDVRFSPSLSRLATSSAD 618 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~----~i~~l-~~h~~~V~sv~fspdg~~Latgs~D 618 (835)
+......+++|+..|.++++.|.|-.|++|+.|.+|++||+.... ..+.+ ......|.++.|++.+..|++.+..
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 344566789999999999999999999999999999999986432 12222 2234479999999999999999888
Q ss_pred CeEEEEecCCCCce-----------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEee------
Q 003271 619 RTVRVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK------ 680 (835)
Q Consensus 619 g~I~IWDl~t~~~~-----------~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~------ 680 (835)
..++|+|-+..... +...++|...++|.+|+|..+..|++|+.||++++||++..+ .+.+++
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 89999997643321 123568999999999999999999999999999999997654 333333
Q ss_pred --cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EE-EEEcCCCC--CeEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003271 681 --SGATQMRFQPRLGRILAAAIENYISILDVETQV--CR-LKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGS 752 (835)
Q Consensus 681 --~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i-~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t 752 (835)
..++.++|++++..|++|+.||.|.+|+..... +. +.-..|.. .|+||.|++||++|++-+ |+++++||++.
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 337889999999999999999999999986542 22 22345776 899999999999999988 99999999998
Q ss_pred CCCcceEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271 753 GSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 823 (835)
Q Consensus 753 ~~~~~~i~~l~~--~~~~V~sv~fspdg~~L~sgs~------dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La 823 (835)
.+ +++....+ ....-+.|+|+|+.+.|++|+. .+.+++||..+...+ ++.-....|..+.|+|.=+.|+
T Consensus 396 ~k--kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 396 FK--KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cc--cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 75 44444433 3445688999999999999875 358999999888877 5555577899999999988899
Q ss_pred EEECCCcEEEe
Q 003271 824 SASHDKCVKIW 834 (835)
Q Consensus 824 Sgs~DG~V~IW 834 (835)
.|+.||+++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-27 Score=247.94 Aligned_cols=275 Identities=20% Similarity=0.313 Sum_probs=231.2
Q ss_pred cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (835)
Q Consensus 501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (835)
.+.....++|+++.|.+.-+|....+ ..+...+++.+|..+|..+.||||.++|++|+.|..+.
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d----------------~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYD----------------VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecC----------------cceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 34444589999999999999943322 12667889999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEE
Q 003271 581 LWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 581 VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~s 658 (835)
+||+.++.....+. +|...+.+++|.|||..+++|+.|++|..||++... +....+- ...|.+++..+||+.++++
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEE
Confidence 99999999987774 346789999999999999999999999999998643 3333332 2569999999999977755
Q ss_pred EeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC--eEEEEEcC-C
Q 003271 659 CDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--VHSVCWNT-S 733 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~--I~sl~fsp-d 733 (835)
+ .|..|++|+.++......+ ..++++++++.++.++++.-.+..|.+||++....+..+.||... |..-||.- +
T Consensus 373 ~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 373 T-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred e-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence 5 6999999999887666444 356999999999999999999999999999988888899988754 33445644 4
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCC
Q 003271 734 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 797 (835)
Q Consensus 734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~ 797 (835)
..++++|+ |+.|+||+..++ +.+.++.+|...|++++|+|..+ .+++++.||+|+||....
T Consensus 452 ~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 58999999 999999999998 89999999999999999999775 578889999999997653
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.1e-26 Score=259.68 Aligned_cols=271 Identities=21% Similarity=0.385 Sum_probs=230.6
Q ss_pred cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (835)
Q Consensus 501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (835)
++.+...++.++-..+.|.+|+.. -...+..+.+|.++|..++|+|+..++++|+.|.+|+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYR-------------------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYR-------------------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhh-------------------hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence 456666789999999999999331 1234556789999999999999999999999999999
Q ss_pred EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
||+.++.+++.++.+|-+.|..+.|++.-.+|+++|.|-+|+||+..+.+ ++..+.+|+..|+|..|+|.. .++++++
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptE-DlIVSaS 154 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTE-DLIVSAS 154 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCcc-ceEEEec
Confidence 99999999999999999999999999999999999999999999999866 599999999999999999985 4888999
Q ss_pred CCCcEEEEECCCCeee-----------------------------eEee---cCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271 661 NNSEIRYWSINNGSCA-----------------------------GVFK---SGATQMRFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 661 ~Dg~I~iwDl~s~~~~-----------------------------~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwD 708 (835)
-|-+|++||+..-+.. ..+. -++.-++|+|.-..|++|+.|..|++|.
T Consensus 155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr 234 (1202)
T KOG0292|consen 155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 234 (1202)
T ss_pred ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence 9999999998532110 1111 2377889999999999999999999999
Q ss_pred CCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 709 VETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 709 l~t~~--~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
+...+ .+.+..+|.+.|.|+-|+|..++|++.+ |++|+|||+... ..+.++.......+.++.+|..+ |++++
T Consensus 235 mnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lN-LfAAg 310 (1202)
T KOG0292|consen 235 MNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELN-LFAAG 310 (1202)
T ss_pred eccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcc-eeeee
Confidence 87543 3556789999999999999999999998 999999999877 78888888889999999999998 45555
Q ss_pred cCCeEEEEEcC
Q 003271 786 CYETLELWNMT 796 (835)
Q Consensus 786 ~dg~I~IwDl~ 796 (835)
.|+.+.||.++
T Consensus 311 HDsGm~VFkle 321 (1202)
T KOG0292|consen 311 HDSGMIVFKLE 321 (1202)
T ss_pred cCCceEEEEEc
Confidence 55556666654
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.9e-26 Score=267.97 Aligned_cols=279 Identities=20% Similarity=0.299 Sum_probs=236.6
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEEcCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEEC
Q 003271 552 PASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~ 617 (835)
..+...|.+++.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||.+||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34566799999999999999999 999999998642 2344566789999999999999999999999
Q ss_pred CCeEEEEecCC----CC-------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee
Q 003271 618 DRTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (835)
Q Consensus 618 Dg~I~IWDl~t----~~-------------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~ 680 (835)
|+.|.||+... .. .++..+.+|...|..++|+|++. ++++++.|++|.+||..+.+++..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeee
Confidence 99999999872 00 24677889999999999999865 88899999999999999999888887
Q ss_pred cC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCCCEEEEEe--CC---eEE
Q 003271 681 SG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVS--DE---LVR 746 (835)
Q Consensus 681 ~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h------~~~I~sl~fspdg~~Lasgs--Dg---~I~ 746 (835)
++ +..+.|+|-|.+|++-+.|++|+||++.+..+.+.+.++ ...+..+.|+|||.+|++.. .+ ++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 55 889999999999999999999999998887777776653 33578899999999999876 33 788
Q ss_pred EEEcCCCCCcceEEEeecCCCceEEEEEeCC-----CC------------EEEEEEcCCeEEEEEcCCCcEEE--eccCC
Q 003271 747 VWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FP------------SLLVIGCYETLELWNMTENKTLT--LSAHD 807 (835)
Q Consensus 747 IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd-----g~------------~L~sgs~dg~I~IwDl~~~~~~~--l~~h~ 807 (835)
|.+-.+. +.-..+-+|..++.++.|+|. .. .+++|+.|++|.||.....+++. ..-..
T Consensus 249 IieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 249 IIERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence 8887665 667788899999999999873 11 57888999999999997777662 22345
Q ss_pred CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 808 KLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 808 ~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
..|.+++|+|||-.|+.|+.||+|.+.
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 789999999999999999999999875
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.8e-26 Score=264.02 Aligned_cols=268 Identities=25% Similarity=0.437 Sum_probs=237.6
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~-l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~ 631 (835)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 467778899998 45899999999999999999999988 99999999999998778899999999999999988876
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwD 708 (835)
+...+.+|.+.|.++...+. ++++|+.|.+|++|++.++.++..+.++ |.++.++ ++.+++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 58999999999999998744 7788999999999999999999888743 6666666 89999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 709 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 709 l~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
+.++++++.+.+|...|.++.+... .++++|+ |++|++||+++.. +|+.++.+|...+..+.+ .+.+|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 7888888 9999999998864 688999999988866655 56689999999
Q ss_pred CeEEEEEcCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 788 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 788 g~I~IwDl~~~~~~-~l~~-h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++|++||..+++++ .+.+ |...|..+++. ...+++++.||++++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 5555 56888888876 46789999999999997
No 70
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.4e-25 Score=257.26 Aligned_cols=247 Identities=16% Similarity=0.212 Sum_probs=199.9
Q ss_pred EeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCc-------eeEEeecCCCCeE
Q 003271 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 644 (835)
Q Consensus 573 gs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~-------~~~~~~~h~~~V~ 644 (835)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888899999999999999997 78999999999999999976431 2346788999999
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 722 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~ 722 (835)
+++|+|++..++++++.|+.|++||+++++.+..+. ..+.+++|++++..|++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988765553 458999999999999999999999999999999999999998
Q ss_pred CCeEEE-----EEcCCCCEEEEEe-CC----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271 723 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 792 (835)
Q Consensus 723 ~~I~sl-----~fspdg~~Lasgs-Dg----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I 792 (835)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 3458888888877 53 7999999964322222233333344444444566888999999999999
Q ss_pred EEcCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003271 793 WNMTENKTLTL--SAHDKLVSSLAASTVN 819 (835)
Q Consensus 793 wDl~~~~~~~l--~~h~~~V~~la~spdg 819 (835)
|++..+....+ ..+..++.+++|.|+.
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999965
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.6e-27 Score=234.72 Aligned_cols=273 Identities=19% Similarity=0.219 Sum_probs=236.1
Q ss_pred cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (835)
Q Consensus 503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (835)
.+..-|+.+++.|+.--+- .|.+..-+.++.||.+.|++.+++.+....|+++.|-+.+||
T Consensus 26 tp~g~flisa~kd~~pmlr-------------------~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred CCCceEEEEeccCCCchhc-------------------cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 4455677777776553322 233445578899999999999999999899999999999999
Q ss_pred EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 583 d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
|.-++..+.++ .|...|.+++|+.|.++|+||+.+..++|||+...+.+...+.+|.+.|..+.|+...+.+| +..+|
T Consensus 87 ~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd 164 (334)
T KOG0278|consen 87 DAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADD 164 (334)
T ss_pred hhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccC
Confidence 99999999998 48889999999999999999999999999999999888899999999999999998766454 66889
Q ss_pred CcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271 663 SEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 663 g~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg 740 (835)
++||+||.++++.+..+. .+++++.++++|. +++.+..+.|.+||..+...++.++ -...|.+...+|+..++++|
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaG 242 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAG 242 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEec
Confidence 999999999999987764 6799999999965 5566677899999999999888877 56789999999999988888
Q ss_pred e-CCeEEEEEcCCCCCcceEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 741 S-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 741 s-Dg~I~IwDl~t~~~~~~i~~-l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
+ |..++.||+.++ ..+.. ..+|.++|.++.|+|+|...++|+.||+|+||.+..++..
T Consensus 243 ged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 8 999999999999 44545 4889999999999999999999999999999998766544
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.8e-26 Score=242.46 Aligned_cols=275 Identities=24% Similarity=0.367 Sum_probs=241.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
...|+++...+....+++|+.|..+.++|......+..+++|...|+.+.|+++...+++++.|..|+||...... +..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Ccc
Confidence 3458888888887799999999999999999999999999999999999999999999999999999999998766 366
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----CceEEEEecCCCEEEEEEcCCcEEEEEC
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----GATQMRFQPRLGRILAAAIENYISILDV 709 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~i~~l~fsp~~~~ll~~s~dg~I~IwDl 709 (835)
....|..+|+.+..+|.|++ |++++.|+++.+.|++++.++..... .+++.+|+|||..|.+|+.|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 77789999999999999885 45889999999999999998877654 3889999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcC
Q 003271 710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 710 ~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~d 787 (835)
.....+..|.+|.++|..+.|+.+|.||++++ |+.|++||++..+ .+.++.. ....+.++.|.+.|.+|++++.+
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeecce
Confidence 99999999999999999999999999999999 7789999999874 3333332 23479999999999999999877
Q ss_pred CeEEEEEcCCCc--EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 788 ETLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 788 g~I~IwDl~~~~--~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
=.|++++-.+.. ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 777777755443 33 566788899999999999999999999999886
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-26 Score=253.97 Aligned_cols=266 Identities=22% Similarity=0.387 Sum_probs=230.5
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec-
Q 003271 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 638 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~- 638 (835)
-++|+. ...||+|. ...|++|+..+++.......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS 258 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence 357773 44677665 46899999999987766666689999999999999999999999999999998765 666666
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQMRFQPRLGRILAAAIENYISILDVETQVC 714 (835)
Q Consensus 639 h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~ 714 (835)
|...|.+++|. ..++.+|+.|+.|.++|++..+.... +...++.+.|++++.+++.|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999999 34888999999999999998765443 345589999999999999999999999999998999
Q ss_pred EEEEcCCCCCeEEEEEcCC-CCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003271 715 RLKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE 788 (835)
Q Consensus 715 i~~l~~h~~~I~sl~fspd-g~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~--dg 788 (835)
...+..|...|..++|+|- ..+||+|+ |++|++||..++ ..+..+. ....|+++.|++..+.|+++-. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999999999994 56777766 999999999988 5665554 4788999999999988887655 45
Q ss_pred eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 789 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 789 ~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.4e-26 Score=229.79 Aligned_cols=271 Identities=18% Similarity=0.298 Sum_probs=224.2
Q ss_pred cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 552 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 552 ~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~i-~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
..-.+.|.+++||| ...+|++|+.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 45667899999999 555677999999999999976 3433 44567999999999999999999999999999999999
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISIL 707 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~Iw 707 (835)
+. +..+..|..+|.++.|-+... .+|++|+.|++|++||++....+..+..+-.+.+.+-....+++++.+..|.+|
T Consensus 104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY 181 (347)
T ss_pred CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence 85 678888999999999987533 478999999999999999999998888777777766677889999999999999
Q ss_pred ECCCCeEEEE-Ec-CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC---------CceEEEEEe
Q 003271 708 DVETQVCRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCVFH 775 (835)
Q Consensus 708 Dl~t~~~i~~-l~-~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~---------~~V~sv~fs 775 (835)
+++.+..... .. ..+-.++||+...|....+.|+ +|.+.|..+..+.. +.-.++++|. ..|++++|+
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEee
Confidence 9987643322 11 2344678998888888778888 99999999987643 3444555554 247889999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003271 776 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 825 (835)
Q Consensus 776 pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSg 825 (835)
|....|+++++||++.+||-.....+ ....|..+|++.+|+.+|.++|-+
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999999999998876655 567899999999999999987754
No 75
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4e-25 Score=253.99 Aligned_cols=262 Identities=15% Similarity=0.218 Sum_probs=208.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE-------------EEeccCCCCeEEEEECC-CCCEEEEEECCCeE
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 621 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i-------------~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I 621 (835)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 44566666777666777777777777775443322 13678999999999999 78899999999999
Q ss_pred EEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCC
Q 003271 622 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRL 692 (835)
Q Consensus 622 ~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~ 692 (835)
+|||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+. ..+.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 24567889999999999999877789999999999999999998877765 348999999999
Q ss_pred CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC-eEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCcceEEEeec-C
Q 003271 693 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 765 (835)
Q Consensus 693 ~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-I~sl~fspdg~~Lasgs-----Dg~I~IwDl~t~~~~~~i~~l~~-~ 765 (835)
..|++++.|+.|+|||+++++.+..+.+|... +..+.|.+++..|++++ |+.|++||+++.. ..+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--~p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--SPYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--CceeEeccCC
Confidence 99999999999999999999999999888765 45678888877777643 6899999998764 23333332 2
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003271 766 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 819 (835)
Q Consensus 766 ~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l--~~h~~~V~~la~spdg 819 (835)
...+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+...+..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34566678999999999888 599999999999887633 3455678888888753
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.8e-26 Score=259.58 Aligned_cols=263 Identities=23% Similarity=0.416 Sum_probs=230.8
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEE-ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~-l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
++++.+|+.|.++++| +......+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus 218 ~~~~~~~s~~~tl~~~-------------------~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~ 278 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLW-------------------DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC 278 (537)
T ss_pred cCeEEecCCCceeEEe-------------------ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence 6889999999999999 2233344555 9999999999999987889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
.++.+..++.+|.+.|.++...+ .++++|+.|.+|+||++.++. ++..+.+|.+.|.++.++ ..++++|+.|++
T Consensus 279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGT 352 (537)
T ss_pred CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCce
Confidence 99999999999999999998854 488889999999999999876 488888899999999998 348889999999
Q ss_pred EEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271 665 IRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasg 740 (835)
|++||+.++++++.+.++ +.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+.++.+ .+++|+++
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~ 429 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS 429 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec
Confidence 999999999999999876 566655554 89999999999999999999 999999999998866654 57788888
Q ss_pred e-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 741 S-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 741 s-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
+ |++|++||..++ .++..+.+ +...|..+++. ...+++++.++.+++||+++++..
T Consensus 430 ~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 430 SADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccEEEeecccC---ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 8 999999999998 78888887 56788888776 467999999999999999999877
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3e-25 Score=226.89 Aligned_cols=292 Identities=18% Similarity=0.284 Sum_probs=233.9
Q ss_pred EEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe
Q 003271 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (835)
Q Consensus 509 l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~ 588 (835)
+.+|++...|--|......++ ......+++.....+..|.+.|+|++.+ +.|+|+|+.|-+|+|||+.+.+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 456777777777722222111 1122346677788899999999999995 8899999999999999999999
Q ss_pred EEEEeccCCCCeEEEEECCCCC--EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 589 ~i~~l~~h~~~V~sv~fspdg~--~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
.+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+...- .++..+.+|...|+.++++|.++ +.++.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 9999999999999999999765 8999999999999999976 46899999999999999999987 666888899999
Q ss_pred EEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCe
Q 003271 667 YWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 744 (835)
Q Consensus 667 iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~ 744 (835)
.||+-.|+.....+ ...+.+.|+|.|.+++++.. +.|-||.+++......+. ....+.|+.|...+.+++.+.|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEW 230 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCce
Confidence 99999887665544 44667999999998888776 568899888766655554 336688888865555554444899
Q ss_pred EEEEEcCCCCCcceEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEEcCCC-----cEEEeccCCCCeeEEEEe
Q 003271 745 VRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 816 (835)
Q Consensus 745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f--spdg~~L~sgs~dg~I~IwDl~~~-----~~~~l~~h~~~V~~la~s 816 (835)
|++||..+. .+...+.+|...|-.+.+ .|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 231 i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 231 ISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred EEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 999999886 788999999999999985 567889999999999999999876 334444446677777653
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.3e-25 Score=261.04 Aligned_cols=286 Identities=21% Similarity=0.301 Sum_probs=232.3
Q ss_pred cCCCcEEEecc--CCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271 503 TDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (835)
Q Consensus 503 ~~~~~~l~tGs--~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (835)
.+....+++|+ .|+.+++|....-. +.........-..+.....|.+.|+|+.|++||++||+|+.|+.|.
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred cCCceeEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 44446788999 99999999221111 0011111112345677889999999999999999999999999999
Q ss_pred EEEcCC------------------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC
Q 003271 581 LWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (835)
Q Consensus 581 VWd~~t------------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~ 642 (835)
||.... ++.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+. ..+..+.+|.+.
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSL 173 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeeccccc
Confidence 998662 3467888999999999999999999999999999999999998 568999999999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEEEEc----CCcEEEEEC
Q 003271 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILAAAI----ENYISILDV 709 (835)
Q Consensus 643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~~s~----dg~I~IwDl 709 (835)
|..+.|+|-|+ +|++-++|++|+||++.+..+.+.+.. ....+.|+|+|.+|++... ...+.|++-
T Consensus 174 VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 174 VKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 99999999987 777999999999999887666665542 2667889999999998654 246889999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCC-------------CC----EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271 710 ETQVCRLKLQGHKNQVHSVCWNTS-------------GE----YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 771 (835)
Q Consensus 710 ~t~~~i~~l~~h~~~I~sl~fspd-------------g~----~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s 771 (835)
.+.+.-..+.||..++.++.|+|. .. .+|+|+ |++|.||.....++...++.+ ....|..
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~D 330 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVD 330 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceee
Confidence 999999999999999999999871 11 456677 999999999776443333333 3578999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 772 CVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 772 v~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
++|+|||..|++++.||+|.++.++..+
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999999999999999999987654
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=228.85 Aligned_cols=287 Identities=19% Similarity=0.318 Sum_probs=244.7
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++..+.+|.+.|.+|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45677888999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred Eec------CC---------------------------------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 624 WDT------EN---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 624 WDl------~t---------------------------------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
|.. .. -..++..+.+|...|.+..|...+. -+++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecccc
Confidence 962 10 0124567889999999999998876 4569999999
Q ss_pred EEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271 665 IRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasg 740 (835)
..+||+++++.+..+.++ .+.++-+|....+++.+.|.+.++||.+.. ..+..|.+|...|+++.|..+.+ +++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 999999999999888755 677788999899999999999999999854 55678999999999999987665 5566
Q ss_pred e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEe-----ccCCCCeeEEE
Q 003271 741 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL-----SAHDKLVSSLA 814 (835)
Q Consensus 741 s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l-----~~h~~~V~~la 814 (835)
+ |.+|+|||+++.. ..+.++. ...+++.++++..++.|+.--.+..|++||++...+..+ .+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 6 8899999999874 3444444 367889999999999888888888999999998876643 48999999999
Q ss_pred EeCCCC--EEEEEECCCcEEEeC
Q 003271 815 ASTVNG--MVASASHDKCVKIWK 835 (835)
Q Consensus 815 ~spdg~--~LaSgs~DG~V~IWd 835 (835)
|..+-. -|++|+.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 986543 588999999998885
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.8e-24 Score=208.39 Aligned_cols=295 Identities=18% Similarity=0.255 Sum_probs=238.5
Q ss_pred ccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 003271 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG 574 (835)
Q Consensus 495 ~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs 574 (835)
-++..+.+.+...+.++||...+.++-..++-.+.+. ..+..+..+....+.-+.|.+.|+|.+|+|+|.+|++|+
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 3455667777889999999999999975554433321 112223344556677789999999999999999999999
Q ss_pred CCCeEEEEEcCC--CeE---EEEeccCCCCeEEEEECCC----CCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeE
Q 003271 575 HDKKAVLWCTES--FTV---KSTLEEHTQWITDVRFSPS----LSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVM 644 (835)
Q Consensus 575 ~Dg~I~VWd~~t--~~~---i~~l~~h~~~V~sv~fspd----g~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~ 644 (835)
.|++|++.-.+. ... -..+.-|.+.|.+++|..+ +.+|++++. |..|++-|...+.. +..+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEE
Confidence 999999975543 222 2456679999999999654 556777654 66777778777664 889999999998
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAAIENYISILDVETQVC 714 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~ 714 (835)
++- +-+ ..++++|+.|.+|++||++-..++.++. ..+..+++.|.|..+++|-.|....+||++.++.
T Consensus 188 aly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 188 ALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 873 333 4589999999999999999998887764 2378899999999999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271 715 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 792 (835)
Q Consensus 715 i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I 792 (835)
+..+..|...|.|+.|+|...|+++|+ |..|++-|+...-. ...+.....|...+..|.|+|..-.+++.+.|.++.+
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 999999999999999999999999999 99999999875321 2345566789999999999999999999999999999
Q ss_pred EEcC
Q 003271 793 WNMT 796 (835)
Q Consensus 793 wDl~ 796 (835)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=255.06 Aligned_cols=241 Identities=19% Similarity=0.353 Sum_probs=199.1
Q ss_pred EEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC--------------------------------CC-----
Q 003271 589 VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD----- 630 (835)
Q Consensus 589 ~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t--------------------------------~~----- 630 (835)
....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. ..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334555 8999999999999999999999999999998754 00
Q ss_pred ----------------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEE
Q 003271 631 ----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQM 686 (835)
Q Consensus 631 ----------------------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l 686 (835)
.++..+.+|.+.|.+|.|+.+ ++|++++.|.+|++|++...+|+++|... |+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 124457889999999999976 47779999999999999999999998755 9999
Q ss_pred EEecC-CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe--
Q 003271 687 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-- 762 (835)
Q Consensus 687 ~fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l-- 762 (835)
+|+|. +++|++|+.|+.|+||++...+.+.-.. -..-|+++||.|||++.+.|+ +|.+++|+....+ .....
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk---~~~~~~I 491 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK---LVSDFHI 491 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCe---EEEeeeE
Confidence 99995 5789999999999999999887776555 448899999999999999999 9999999998763 22221
Q ss_pred ec------CCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCCcEE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEE
Q 003271 763 SC------TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 763 ~~------~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~--~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
.. ....|+.+.|.|... .|++.+.|..|+|||.++..++ .+.++.. .-....|+.||++|+++++|..|+
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 11 123799999997654 5999999999999999888776 5554432 234567889999999999999999
Q ss_pred EeC
Q 003271 833 IWK 835 (835)
Q Consensus 833 IWd 835 (835)
||+
T Consensus 572 iW~ 574 (712)
T KOG0283|consen 572 IWK 574 (712)
T ss_pred EEe
Confidence 996
No 82
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=239.44 Aligned_cols=240 Identities=19% Similarity=0.266 Sum_probs=207.6
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCC
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~ 629 (835)
+.--.+.|++++|-.||++||+|+..|.|+|||..+...+..+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 3344567999999999999999999999999998776777889999999999999995 667888999999999999987
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEee--cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK--SGATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
.. ...+.+|++.|.|.+|+|-..+++++|+.||.|++||++.. ..+..+. .++..+.+-|.|..|++++ .+.|+|
T Consensus 144 ~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 144 YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV 221 (487)
T ss_pred EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence 64 66889999999999999999999999999999999999987 5566665 4588999999987776655 478999
Q ss_pred EECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271 707 LDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 707 wDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg 784 (835)
||+-++ +.+..+..|...|+|+++..++..|++++ |+.|+|||+.+- +.++.+. -.++|.+++.+|++..+++|
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEe
Confidence 999965 55555556999999999999999999999 999999997765 6777766 47889999999999999999
Q ss_pred EcCCeEEEEEcC
Q 003271 785 GCYETLELWNMT 796 (835)
Q Consensus 785 s~dg~I~IwDl~ 796 (835)
..+|.+.+-+..
T Consensus 298 msnGlv~~rr~~ 309 (487)
T KOG0310|consen 298 MSNGLVSIRRRE 309 (487)
T ss_pred cccceeeeehhh
Confidence 999988776443
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=242.15 Aligned_cols=264 Identities=21% Similarity=0.352 Sum_probs=223.9
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
....+++|+.|..|++|..... ....+.++.|..+.|+++.|.++++++++++.|+.+++|++
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3357799999999999933222 23456778899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
+......++.+|.+.|+++.|......+++|+.|.+|++||+....+ .+++. ..+.+..|+.. ...+++|-.|+.
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l-~~S~cnDI~~~---~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-SKTVL-PGSQCNDIVCS---ISDVISGHFDKK 323 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-ecccc-ccccccceEec---ceeeeecccccc
Confidence 99999999999999999999998877799999999999999998543 44333 22445666655 336779999999
Q ss_pred EEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCCCEEE
Q 003271 665 IRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLA 738 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~fspdg~~La 738 (835)
|++||+++..++..... .++++..++++..+++++.|..+.++|+++......+.. .....+.++|||++.|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 99999999999888764 499999999999999999999999999999988877754 234588899999999999
Q ss_pred EEe-CCeEEEEEcCCCCCcceEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 739 SVS-DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 739 sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~--~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
+|+ ||.|+||++.++ ++...+..... .|++++|+|.|..+++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999 999999999998 55555554444 59999999999999999999999999
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.6e-26 Score=250.89 Aligned_cols=273 Identities=23% Similarity=0.427 Sum_probs=234.3
Q ss_pred EEEEe-CCCCEEEEEeCCCeEEEEEcCCCe------EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-c
Q 003271 560 SCHFS-PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y 631 (835)
Q Consensus 560 sl~fS-pdg~~Lasgs~Dg~I~VWd~~t~~------~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~ 631 (835)
++..+ |.++||++||.||.|++|++.... .+.+++.|.++|.+++...+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33443 367789999999999999875322 367788999999999999999999999999999999998764 5
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee--eeEe------------ecCceEEEEecCCCEEEE
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVF------------KSGATQMRFQPRLGRILA 697 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~--~~~~------------~~~i~~l~fsp~~~~ll~ 697 (835)
+..++..|.+.|.|+++-...+.++++|+-|+.|.+||++++.. +..+ +.++.+++.++.+..|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 68889999999999999444467999999999999999998732 2222 134788899999988999
Q ss_pred EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp 776 (835)
|+.++.+++||.++.+.+..+.+|...|.++..++||+.+++++ ||+|++||+... +|+.++..|...|+++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 99999999999999999999999999999999999999999988 999999999887 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCC-cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 777 TFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~-~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+-.++++|+.|+.|+.=|+.+. ++..+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999884 4445556667888888776555557778899998884
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-23 Score=204.60 Aligned_cols=287 Identities=18% Similarity=0.256 Sum_probs=235.4
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC------C---------eEEEEeccCCCCeEEEEECCC
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSPS 608 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~---------~~i~~l~~h~~~V~sv~fspd 608 (835)
.|..+.++ ..+..|.+++|+|.|.+.++|+..++++|.-... + -..+.-+.|.+.|+|++|+|+
T Consensus 22 ~f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 22 HFEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred ceEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 34455555 4456799999999999999999999998874321 1 112334679999999999999
Q ss_pred CCEEEEEECCCeEEEEecCCCCc----eeEEeecCCCCeEEEEEcCC---CCcEEEEEe-CCCcEEEEECCCCeeeeEee
Q 003271 609 LSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVFK 680 (835)
Q Consensus 609 g~~Latgs~Dg~I~IWDl~t~~~----~~~~~~~h~~~V~sl~fsp~---g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~~ 680 (835)
|.+|++|+.|.+|++.-...... .-..+..|.+.|..++|..+ +..++++++ .|..|++-|...+.....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999999999987664332 23567789999999999753 345666654 57788888998888888777
Q ss_pred cCceEE--EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003271 681 SGATQM--RFQPRLGRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSI 750 (835)
Q Consensus 681 ~~i~~l--~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl 750 (835)
++...+ -++.++-.+++|+.|.+|++||++-..++..+.. ..+.|.+++..|.|++|++|. |....+||+
T Consensus 181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 653322 2566778899999999999999999888877653 235789999999999999999 999999999
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc-----EEEeccCCCCeeEEEEeCCCCEEEEE
Q 003271 751 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVASA 825 (835)
Q Consensus 751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~-----~~~l~~h~~~V~~la~spdg~~LaSg 825 (835)
+.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+...- .+....|.+.+..+.|+|..--+++.
T Consensus 261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 998 8999999999999999999999999999999999999986532 34667899999999999999889999
Q ss_pred ECCCcEEEe
Q 003271 826 SHDKCVKIW 834 (835)
Q Consensus 826 s~DG~V~IW 834 (835)
+.|.++.+|
T Consensus 338 sadkt~tlw 346 (350)
T KOG0641|consen 338 SADKTATLW 346 (350)
T ss_pred cCcceEEEe
Confidence 999999999
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=221.53 Aligned_cols=239 Identities=24% Similarity=0.364 Sum_probs=213.0
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (835)
Q Consensus 591 ~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD 669 (835)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+... ....+|.+.|-.++|+|....++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4566899999999999999999999999999999998764322 456789999999999999899999999999999999
Q ss_pred CCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEE
Q 003271 670 INNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 746 (835)
Q Consensus 670 l~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~ 746 (835)
++.++++..+. .+...+.|+|+|++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++... .|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999987765 556778999999999999999999999999988777665 556788889988777776666 79999
Q ss_pred EEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003271 747 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 825 (835)
Q Consensus 747 IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSg 825 (835)
|...... +.+.++..|.....++.|+|+|+++++|+.|..+.+||+.+.-++ .+..++-+|..|+|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9999866 889999999999999999999999999999999999999998887 677899999999999999999999
Q ss_pred ECCCcEEE
Q 003271 826 SHDKCVKI 833 (835)
Q Consensus 826 s~DG~V~I 833 (835)
+.|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988755
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=220.84 Aligned_cols=283 Identities=19% Similarity=0.286 Sum_probs=214.2
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEe--ccCCCCeEEEEECCCCCEEEEE-ECCCeEE
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLATS-SADRTVR 622 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l--~~h~~~V~sv~fspdg~~Latg-s~Dg~I~ 622 (835)
+..+++|.+.|+|++|+.||++||+++.|+.|+||+++..... +.+ .-.-+.-+.++|.||.+-+++. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578899999999999999999999999999999999874321 111 1122356789999997655554 4456899
Q ss_pred EEecCCC---Ccee--------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEE
Q 003271 623 VWDTENP---DYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRF 688 (835)
Q Consensus 623 IWDl~t~---~~~~--------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~f 688 (835)
+|.+... .... .....|...|..+-.... ..+|++++.|..|.+|+++ |..+..+.. .....++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 9987532 2111 122345566666666555 4578899999999999999 777776654 3667889
Q ss_pred ecCCCEEEEEEcCCcEEEEECC---CC-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC----CC
Q 003271 689 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK 755 (835)
Q Consensus 689 sp~~~~ll~~s~dg~I~IwDl~---t~-----~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~----~~ 755 (835)
+|+|.++++++..-.|++|.+- .+ ..+..+++|...|..++|+++.+.+++.+ ||+++|||+.-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999874 22 34567889999999999999999999999 999999997532 11
Q ss_pred cceEEE----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271 756 GECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 756 ~~~i~~----l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG 829 (835)
.+.+.+ +...+.....+.++|.|..|+++ ....|.+|..++++.. ....|...|.+|+|+++|++++||+ |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 222222 22334555689999999966554 4458999999998877 3457999999999999999999987 56
Q ss_pred cEEEe
Q 003271 830 CVKIW 834 (835)
Q Consensus 830 ~V~IW 834 (835)
.++++
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 67664
No 88
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.3e-23 Score=241.58 Aligned_cols=243 Identities=18% Similarity=0.267 Sum_probs=189.4
Q ss_pred EEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEECCC
Q 003271 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg 619 (835)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. +.+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34679999999999999 8899999999999999999764 3567888999999999999985 6999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCEE
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRI 695 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~l 695 (835)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+ ...+.|.++++.+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999876 4677888999999999999976 7779999999999999999888776543 3467788988888
Q ss_pred EEEE----cCCcEEEEECCCCe-EEEEEcC-CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec-CC
Q 003271 696 LAAA----IENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 766 (835)
Q Consensus 696 l~~s----~dg~I~IwDl~t~~-~i~~l~~-h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~-~~ 766 (835)
++++ .|+.|++||+++.. ++..... +...+....|++++.+|++++ |+.|++||+.++ ..+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~---~~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE---RLTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC---ceEEEeeccCC
Confidence 8765 36899999998754 3333332 334566678899999888776 899999999987 34433322 34
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271 767 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~ 798 (835)
..+..++|.|... +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888888532 11122224455655443
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=7.4e-24 Score=212.31 Aligned_cols=273 Identities=17% Similarity=0.159 Sum_probs=226.0
Q ss_pred ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (835)
Q Consensus 502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (835)
+.....+|.+.+.|..+.+|.+.++ ..+.++.||++.|+||+.+.+.++|++|+.|.++++
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~nG-------------------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLNG-------------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecCC-------------------ceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 3334479999999999999966554 346788999999999999999999999999999999
Q ss_pred EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-----CCeEEEEecCCC------CceeEEeecCCCCeEEEEEcC
Q 003271 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENP------DYSLRTFTGHSTTVMSLDFHP 650 (835)
Q Consensus 582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~------~~~~~~~~~h~~~V~sl~fsp 650 (835)
||+++|+.+..++ ...+|..+.|+++|++++.+.. .+.|.++|+... +.++..+..+.+.++.+.|.|
T Consensus 79 WDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 79 WDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred EEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 9999999999986 5678999999999998887755 368999999832 234667777889999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeee----EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeE
Q 003271 651 SKEDLLCSCDNNSEIRYWSINNGSCAG----VFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726 (835)
Q Consensus 651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~----~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~ 726 (835)
-++ .|++|..||.|.+||++++..+. .+...|+.++++++..++++++.|..-++||.++.++++++. ...+|.
T Consensus 158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN 235 (327)
T KOG0643|consen 158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN 235 (327)
T ss_pred cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence 977 56699999999999999985543 234569999999999999999999999999999999999988 678999
Q ss_pred EEEEcCCCCEEEEEe-CC--eEEEEEcCCCCC---------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 727 SVCWNTSGEYLASVS-DE--LVRVWSIGSGSK---------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 727 sl~fspdg~~Lasgs-Dg--~I~IwDl~t~~~---------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
+.+++|-...++.|+ .. .|.--+.+.++. .+.+..+.+|-++|++++|+|+|+..++|+.||.|++..
T Consensus 236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 999999888777766 22 233333333311 145667889999999999999999999999999999875
Q ss_pred cC
Q 003271 795 MT 796 (835)
Q Consensus 795 l~ 796 (835)
.+
T Consensus 316 Fd 317 (327)
T KOG0643|consen 316 FD 317 (327)
T ss_pred ec
Confidence 54
No 90
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.1e-24 Score=217.85 Aligned_cols=270 Identities=19% Similarity=0.274 Sum_probs=220.5
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 632 (835)
.-.+.|.++.|+|.+..|+++++||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~-- 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN-- 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence 34667999999999999999999999999999988666666 4899999999987 4689999999999999999876
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCC
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ 712 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~ 712 (835)
...+..|...|.||.+++... .+++|+.|++|++||.+.......+..+-...+.+-.++.|++|+.+..|.+||+++.
T Consensus 87 ~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred ceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 466778999999999997644 6779999999999999986666666655455566777899999999999999999986
Q ss_pred eEEEEEc--CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-CcceEEEeecCC---------CceEEEEEeCCCC
Q 003271 713 VCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTFP 779 (835)
Q Consensus 713 ~~i~~l~--~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~-~~~~i~~l~~~~---------~~V~sv~fspdg~ 779 (835)
....... ..+..++||++.|++.-+++++ ||.|.+=.+.... .......+++|. .+|++++|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 5544222 2455789999999888788888 9988876665541 112333455553 4689999999999
Q ss_pred EEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 780 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 780 ~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
.|++|+.||.|.+||+...+.+ .+...+..|..++|+.+|..||.++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999988877 55566778999999999999999873
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=7.3e-25 Score=222.91 Aligned_cols=290 Identities=13% Similarity=0.221 Sum_probs=230.2
Q ss_pred ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (835)
Q Consensus 502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (835)
+.....++++|+.|..|+++....--... .......-+.......++++..|.++|+++.|+|....|++|+.|++|++
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 33444799999999999999544211110 11111111222223568899999999999999999999999999999999
Q ss_pred EEcCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE--eecCCCCeEEEEEcCCCCcEEE
Q 003271 582 WCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHPSKEDLLC 657 (835)
Q Consensus 582 Wd~~t~~~i~~l~--~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~--~~~h~~~V~sl~fsp~g~~ll~ 657 (835)
||...-...+.++ ....+|.+|.|+|.|.+|++|..-.++++||+.+-.+.+.. -..|.+.|+++.+++.++ +.+
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYv 277 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYV 277 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEE
Confidence 9987644332222 34568999999999999999999999999999986643222 246889999999999976 778
Q ss_pred EEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----CCeEE
Q 003271 658 SCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHS 727 (835)
Q Consensus 658 sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~I~s 727 (835)
+++.||.|++||--+++|+.++. ..+++..|..+++++++.+.|..+++|.+.+++++..+.+-. ..-+.
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 99999999999999999998875 348889999999999999999999999999999999887632 12234
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 728 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 728 l~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
..|+....|++.-. .+.+..||.++... ....-.+|.+.+..+.-+|.++-+++++.|-.+++|--
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhh--hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 56888888888877 67899999998743 22233478999999999999999999999999999964
No 92
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=6.9e-23 Score=220.78 Aligned_cols=262 Identities=13% Similarity=0.113 Sum_probs=205.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s 645 (835)
+.++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+++. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 35788999999999999999999888876544 6789999999876 5667889999999998664 44444443 3567
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCC
Q 003271 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 722 (835)
Q Consensus 646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~ 722 (835)
++|+|+++.++++++.++.|++||+.+.+.+..+.. .+..++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 899999987777777899999999999888777753 367899999999999888765 57788999887766544 23
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003271 723 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 792 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~-------~~~V~sv~fspdg~~L~sg-s~dg~I~I 792 (835)
..+.+++|++++.+|++++ ++.|++||+.++ +++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886554 889999999987 444433321 1123568899999987665 45668999
Q ss_pred EEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 003271 793 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 835 (835)
Q Consensus 793 wDl~~~~~~~l~~h~~~V~~la~spdg~~LaSg-s~DG~V~IWd 835 (835)
||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554556689999999999998876 4689999997
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.4e-25 Score=241.04 Aligned_cols=315 Identities=15% Similarity=0.227 Sum_probs=253.9
Q ss_pred CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (835)
Q Consensus 504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (835)
...+++.+|+.|+.|++|....+... +.-.....+..|.+-|..+....+++.|++++.|.+|++|+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 34568999999999999944333211 01113567789999999999999999999999999999999
Q ss_pred cCCC--eEEEEeccCCCCeEEEEE-CCCCCEEEEEECCCeEEEEecCCCCc---------eeEEee-cCCCCeEEEEEcC
Q 003271 584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP 650 (835)
Q Consensus 584 ~~t~--~~i~~l~~h~~~V~sv~f-spdg~~Latgs~Dg~I~IWDl~t~~~---------~~~~~~-~h~~~V~sl~fsp 650 (835)
.... -++.++..|.+.|.|+++ .++...+|+|+.|+.|.|||++++.. ....+. ++...|++++-++
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 9877 577889999999999999 78889999999999999999996622 122233 7889999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEE
Q 003271 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 727 (835)
Q Consensus 651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~s 727 (835)
.+ .+|++|+..+.|++||.++.+.+..+.++ +.++..+.+|..+++++.||+|++||+...+|+.++..|...|.+
T Consensus 182 t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 182 TG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred cc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 87 58889999999999999999888777755 888999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE----
Q 003271 728 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---- 802 (835)
Q Consensus 728 l~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~---- 802 (835)
+..+|+-..+++|+ |+.|+.-|+++...... +.....+|..+..+....-+.+++.|+.|+-|...-...+.
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl---ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~ 337 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL---ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGD 337 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheE---eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCC
Confidence 99999999999999 99999999998632222 22345667777777666667888999999999764321110
Q ss_pred ---------------------eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 803 ---------------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 803 ---------------------l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.......|...++-.|.++++|=...|.+.+||
T Consensus 338 ~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 338 LDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 001112233444556778999999999999997
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=6.5e-24 Score=235.74 Aligned_cols=274 Identities=16% Similarity=0.275 Sum_probs=230.7
Q ss_pred eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEeccCCCCeEE-EEECC-CCCEEEEEECCCe
Q 003271 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRT 620 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l~~h~~~V~s-v~fsp-dg~~Latgs~Dg~ 620 (835)
+..-+.+.+|...|..+++.+.. .+++++.||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 34556789999999999887554 8999999999999997655544 556778888887 88876 4456999999999
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEE
Q 003271 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILA 697 (835)
Q Consensus 621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~ 697 (835)
|.+|...... ++.++.+|...|+|++...++. +++|+.|.++++|-+.. +...+. ..+..+..-|.+ .+++
T Consensus 83 i~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred EEEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEe
Confidence 9999999765 5899999999999999877654 77999999999998753 333343 447888888886 8999
Q ss_pred EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
|+.|..|++|.- ++.+.+|.+|...|+.+++-+++.+|.++.||.|++|++ ++ +++.+..+|...|+++....+
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~ 230 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALS 230 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCC
Confidence 999999999987 778899999999999999999988777666999999999 44 799999999999999998888
Q ss_pred CCEEEEEEcCCeEEEEEcCCCcEEEeccCCC-CeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 778 FPSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 778 g~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~-~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
+..|++++.|++++||+.. ++.....|.. .|+++.+-++|. |++||.||.|+||
T Consensus 231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 8899999999999999987 6665555554 899999888775 6778899999998
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=7.6e-23 Score=231.06 Aligned_cols=307 Identities=16% Similarity=0.276 Sum_probs=245.9
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~ 587 (835)
-+..|+.++.+.+|.... -+.+.+++++...|+++.=+|-=..+|.|..+|+|.|++++.+
T Consensus 174 KIvvGs~~G~lql~Nvrt-------------------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRT-------------------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred eEEEeecCCcEEEEEecc-------------------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence 345677777777773322 2568888999999999999998789999999999999999999
Q ss_pred eEEEEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 588 TVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 588 ~~i~~l~~h~~~V~sv~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
+.+.+++...+.|+++.|..||+. +++|+..|.+.+||++..+........|.+.|..+.|.+.. .++++.+.|+.++
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLK 313 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCcee
Confidence 999999855699999999999875 56666679999999997765444455676667776666653 3566666666555
Q ss_pred EEECCCCe-----------------eee----------------------------------------------------
Q 003271 667 YWSINNGS-----------------CAG---------------------------------------------------- 677 (835)
Q Consensus 667 iwDl~s~~-----------------~~~---------------------------------------------------- 677 (835)
+|=.+++. +++
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 54322100 000
Q ss_pred --------------------------------------------Ee--------ecCceEEEEecCCCEEEEEEcCCcEE
Q 003271 678 --------------------------------------------VF--------KSGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 678 --------------------------------------------~~--------~~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.+ ...+++++.++.|++.+.|...|.|.
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 00 02266788999999999999999999
Q ss_pred EEECCCCeEEEEE---cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-------------------------
Q 003271 706 ILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------------------------- 756 (835)
Q Consensus 706 IwDl~t~~~i~~l---~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~------------------------- 756 (835)
+|++.+|.....+ ..|..+|+.++.+.-++.+++++ +|.+++||+......
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9999999988888 47999999999999899898888 999999998764200
Q ss_pred -------------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEE
Q 003271 757 -------------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 823 (835)
Q Consensus 757 -------------~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~La 823 (835)
+.++.+.+|.+.|++++|+|||++|++++.|++|++||+.++.++-...-+.+++.+.|+|+|.+||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA 633 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence 1122356799999999999999999999999999999999999997777788999999999999999
Q ss_pred EEECC-CcEEEe
Q 003271 824 SASHD-KCVKIW 834 (835)
Q Consensus 824 Sgs~D-G~V~IW 834 (835)
|+..| .-|++|
T Consensus 634 T~Hvd~~gIylW 645 (910)
T KOG1539|consen 634 TVHVDQNGIYLW 645 (910)
T ss_pred EEEecCceEEEE
Confidence 99988 569999
No 96
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.6e-24 Score=214.29 Aligned_cols=247 Identities=20% Similarity=0.296 Sum_probs=204.0
Q ss_pred eEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcC-CCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeE
Q 003271 545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTV 621 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I 621 (835)
+.+...+.. .+.+..++|+++. ..+++++.||+++|||+. ..+++..+++|...|.++.|++. ...++++|.|++|
T Consensus 51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 344444433 4569999999954 578889999999999964 34678899999999999999984 6678899999999
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCC-CEEEE
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRL-GRILA 697 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~-~~ll~ 697 (835)
++|+...+. .+.++.+|...|....|+|....++++++.|+.+++||++.......+. ..+.+..|+... ..+++
T Consensus 130 KLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T 208 (311)
T KOG0277|consen 130 KLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT 208 (311)
T ss_pred EeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence 999998765 4899999999999999999999999999999999999998643332243 457788887755 55777
Q ss_pred EEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEE
Q 003271 698 AAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 774 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f 774 (835)
++.|+.|++||++.- .++..+.+|.-.|+.|.|+|.. .+|++++ |=+++|||..... .++.+...|..-+..+.|
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDW 286 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecccc
Confidence 888999999999974 6778889999999999999965 5777888 9999999998653 466677788888999999
Q ss_pred eCC-CCEEEEEEcCCeEEEEEc
Q 003271 775 HPT-FPSLLVIGCYETLELWNM 795 (835)
Q Consensus 775 spd-g~~L~sgs~dg~I~IwDl 795 (835)
++- ...++.++-|+.++||+-
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 874 567899999999999983
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=224.77 Aligned_cols=278 Identities=19% Similarity=0.298 Sum_probs=224.0
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE----EE---e-----------ccCCCCeEEEEECCCC
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST---L-----------EEHTQWITDVRFSPSL 609 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i----~~---l-----------~~h~~~V~sv~fspdg 609 (835)
+..+..|.-+|+||+++||++++++++.|++|.-|++.+++.. .+ + +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 7788899999999999999999999999999999998877633 11 0 2688899999999999
Q ss_pred CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEE
Q 003271 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQM 686 (835)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l 686 (835)
+||++|+.|..|.||+..+... +..+.+|.+.|.+++|-... .-+++++.|+.|++|++.....+.++- ..+..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998764 78899999999999998654 456688999999999999877665554 346677
Q ss_pred EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-c-
Q 003271 687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-C- 764 (835)
Q Consensus 687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-~- 764 (835)
.....+..+-+++.|.++++|++. .+....+.+|.+.+-|++|-.+..++..+.+|.|.+|++-.. +++++.. .
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK---kplf~~~~AH 368 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKK---KPLFTSRLAH 368 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeeccc---CceeEeeccc
Confidence 766676777778899999999994 445556778999999999987666554444999999999876 3333321 1
Q ss_pred ----------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc----EEEeccCCCCeeEEEEeCCCCEEEEE-ECCC
Q 003271 765 ----------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA-SHDK 829 (835)
Q Consensus 765 ----------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~----~~~l~~h~~~V~~la~spdg~~LaSg-s~DG 829 (835)
+...|++++..|....+++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|+.|++| +...
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence 11378999999999999999999999999998882 33333467889999999999955554 4443
Q ss_pred cE
Q 003271 830 CV 831 (835)
Q Consensus 830 ~V 831 (835)
.+
T Consensus 449 Rl 450 (479)
T KOG0299|consen 449 RL 450 (479)
T ss_pred cc
Confidence 33
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.4e-24 Score=225.72 Aligned_cols=286 Identities=20% Similarity=0.277 Sum_probs=225.5
Q ss_pred ccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccC-CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEE
Q 003271 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG-KGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (835)
Q Consensus 495 ~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~-~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasg 573 (835)
+++....+.+.+.++.+++.|++|--|....+.+.+....+..... .+..+.+-. ++|...|.+++.|+||+|||+|
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEec
Confidence 3344445566668899999999999996655544322222210001 222333222 4999999999999999999999
Q ss_pred eCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 574 s~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
+.|..|.||+..+.+.+..+.+|.+.|.+++|......|++++.|++|++|+++...+ +.++.+|.+.|..|.....+
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~re- 298 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSRE- 298 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhccc-
Confidence 9999999999999999999999999999999998888999999999999999998765 78899999999999988764
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-----------
Q 003271 654 DLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----------- 720 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~----------- 720 (835)
.++.+|+.|+++++|++.....+... .+.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+...
T Consensus 299 R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 299 RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence 47778889999999999543322222 234777777655 8899999999999999999888876541
Q ss_pred -CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271 721 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786 (835)
Q Consensus 721 -h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~ 786 (835)
+..+|++|+..|...++++|+ +|.|++|-+..+.. ...+..+. -.+.|++++|+++|++|++|..
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence 223899999999999999999 99999999988732 34455555 5678999999999997777754
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.3e-23 Score=224.97 Aligned_cols=275 Identities=18% Similarity=0.265 Sum_probs=232.6
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---eEEEEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~i~~l~--~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
.|..-|.++.+|...++++||+. |.|+|||+... ..+..+. .....|.++.+.|||+.|++|++-.+|.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68888999999999999999985 88999998642 3333332 245689999999999999999999999999998
Q ss_pred CCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCc
Q 003271 628 NPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 628 t~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~ 703 (835)
.....++ .+....-..+.++.+||.+ +.++|..||.|.|||+.+...++.|.+ ++.||.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7764332 2333334577899999976 666788899999999999999999875 4899999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~ 782 (835)
|+.||+++++.+.... ..+.|.++.++|.+.+|++|- ++.|.|...... ..+.+.-|...|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987765544 567899999999999999999 788888876654 3445667899999999999999999
Q ss_pred EEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 783 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 783 sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
+.+.|+.+..|.+.-|..+.-....+.|.++.++.|.++||||+.|+...||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999998888666778899999999999999999999887776
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=6.7e-24 Score=228.30 Aligned_cols=283 Identities=15% Similarity=0.221 Sum_probs=221.9
Q ss_pred CCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEE
Q 003271 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (835)
Q Consensus 493 g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Las 572 (835)
|+..++...++.....+++|++|.+|+.|+-..-... -..|+.+. +.....|.++.|++.|..|++
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQ--PCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccC--cccccccceeeecCCCCeEEE
Confidence 5566777778888899999999999999954433111 11122222 234456999999999999888
Q ss_pred EeCCCeEEEEEcCCCeEEEEe------------ccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEee--
Q 003271 573 GGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (835)
Q Consensus 573 gs~Dg~I~VWd~~t~~~i~~l------------~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~-- 637 (835)
.+....++|+|-+........ ++|...++|.+|+|+ ...|+|++.||+++|||+...+..+..+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 888889999998765554433 579999999999997 45799999999999999987665444433
Q ss_pred ---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEe----e--cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271 638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVF----K--SGATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 638 ---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~----~--~~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
+..-+++.++|+++++. |++|..||.|.+|+..+.... ..+ . ..++++.|+++|++|++-+.|+.+++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23457899999999884 778888999999998543322 111 1 25999999999999999999999999
Q ss_pred EECCCC-eEEEEEcCC--CCCeEEEEEcCCCCEEEEEe-------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271 707 LDVETQ-VCRLKLQGH--KNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776 (835)
Q Consensus 707 wDl~t~-~~i~~l~~h--~~~I~sl~fspdg~~Lasgs-------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp 776 (835)
||++.. +++....+- ..+-+.++|+|+.++|++|+ .+.+.+||..+. ..+..+......|..|.|+|
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecc
Confidence 999975 555555442 34567899999999999986 247999999887 67778877889999999999
Q ss_pred CCCEEEEEEcCCeEEEE
Q 003271 777 TFPSLLVIGCYETLELW 793 (835)
Q Consensus 777 dg~~L~sgs~dg~I~Iw 793 (835)
.-+.|++++.||.++||
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 99999999999999887
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-23 Score=233.11 Aligned_cols=237 Identities=21% Similarity=0.319 Sum_probs=209.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|++......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999988 99999999997 6689999999999999999877655
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCC-EEEEEE--cCCcEEEE
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLG-RILAAA--IENYISIL 707 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~-~ll~~s--~dg~I~Iw 707 (835)
..+.+|...|..+.|++++. .+++|+.|+.|.|||.........+ ...+..++|+|-.. .|++|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 7889999999999999666555444 45699999999764 455543 58999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271 708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 708 Dl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg 784 (835)
|..++..+..+. ....|.+|.|++..+-|+++. ++.|.||++.+. ..+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999988876 578899999999987666654 779999999886 7888999999999999999999999999
Q ss_pred EcCCeEEEEEcCCC
Q 003271 785 GCYETLELWNMTEN 798 (835)
Q Consensus 785 s~dg~I~IwDl~~~ 798 (835)
+.|.++++|++-+.
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
No 102
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=8.3e-23 Score=236.18 Aligned_cols=227 Identities=17% Similarity=0.220 Sum_probs=175.3
Q ss_pred EEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCe--------EEEEeccCCCCeEEEEECCCCCE-EEEEE
Q 003271 547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS 616 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~--------~i~~l~~h~~~V~sv~fspdg~~-Latgs 616 (835)
.+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|.+|+|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 56778899999999999996 7899999999999999997542 34567889999999999998875 57899
Q ss_pred CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceE-----EEE
Q 003271 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQ-----MRF 688 (835)
Q Consensus 617 ~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~-----l~f 688 (835)
.|++|+|||+.++.. ...+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+..+.++ +.. ..|
T Consensus 146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999998764 34443 567899999999987 6677888999999999999988777644 212 234
Q ss_pred ecCCCEEEEEEcCC----cEEEEECCC-CeEEEEEc--CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEE
Q 003271 689 QPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 760 (835)
Q Consensus 689 sp~~~~ll~~s~dg----~I~IwDl~t-~~~i~~l~--~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~ 760 (835)
+++++++++++.++ .|+|||++. ..++..+. .+.+.+......++|.++++|+ |+.|++|++..+. ...+.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN 301 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence 58889999988774 799999995 45555443 2333344444455688888887 9999999998752 12233
Q ss_pred EeecCCCceEEEEEeCCC
Q 003271 761 ELSCTGNKFHSCVFHPTF 778 (835)
Q Consensus 761 ~l~~~~~~V~sv~fspdg 778 (835)
.+. +..++..++|.|..
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 55678889999974
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=231.29 Aligned_cols=314 Identities=15% Similarity=0.203 Sum_probs=240.4
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC-----------CCEEEEE
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATG 573 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd-----------g~~Lasg 573 (835)
....+.+.-.|..+.+|+..+-... + ....+--|...|+.+.--|- ...++++
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kv----g------------k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKV----G------------KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccc----c------------ceeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 3356777778999999966554221 1 22333345555665554431 1258899
Q ss_pred eCCCeEEEEEcCCCeEEEE-------------e------------------------ccCCCCeEEEEECCCCCEEEEEE
Q 003271 574 GHDKKAVLWCTESFTVKST-------------L------------------------EEHTQWITDVRFSPSLSRLATSS 616 (835)
Q Consensus 574 s~Dg~I~VWd~~t~~~i~~-------------l------------------------~~h~~~V~sv~fspdg~~Latgs 616 (835)
+.|++|++||++.+..-.. . ......|.+++.+|++.+|++|.
T Consensus 399 SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred cCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 9999999999875211000 0 01334699999999999999999
Q ss_pred CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-eeeeEee---cCceEEEEec
Q 003271 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-SCAGVFK---SGATQMRFQP 690 (835)
Q Consensus 617 ~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~---~~i~~l~fsp 690 (835)
.-|+++||++.+.++ ......|...|.|+.|+.. +..+|++++.|..|.+||+... ..+.++. ..|+++.|..
T Consensus 479 r~GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~ 557 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC 557 (1080)
T ss_pred ccCceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence 999999999998765 6677889999999999853 4568999999999999999653 3444444 4589999988
Q ss_pred CC--CEEEEEEcCCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe
Q 003271 691 RL--GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 762 (835)
Q Consensus 691 ~~--~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l 762 (835)
.| ...++++.|..|.+--.........|.. ....++.++..|..+++++++ |..|+|||+.+++..+.++--
T Consensus 558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 87 5678888888776543332111122221 235688999999999999999 999999999999544444444
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 763 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 763 ~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..|.+....+...|.|.||++.+.|.+|.+||..+++++ ...+|...|+.+.|.+|.++|++.+.||.|.||+
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 567788999999999999999999999999999999999 8889999999999999999999999999999995
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=7.9e-22 Score=212.52 Aligned_cols=284 Identities=14% Similarity=0.124 Sum_probs=209.5
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEcC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~ 585 (835)
.++++++.|+.+.+|..... ..+..+.+|.. +.+++|+|+++.+ ++++.++.|++||..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 46788889999999943221 12344445543 6789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
+++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+... +..+. +...+.+++|+|++..++++...+..
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 9988877765544 5678999999877655 5689999999987553 44443 23457889999998755544433346
Q ss_pred EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEcCCC-----C--CeEEEEEcCCC
Q 003271 665 IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSG 734 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~-----~--~I~sl~fspdg 734 (835)
+.+||..+++...... .....+.|++++..+++++ .++.|++||+++++.+..+..+. . ....++|+|++
T Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred EEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 7788999887765443 3467789999999887665 58999999999988776654221 1 23468899999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEeccCCCCee
Q 003271 735 EYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVS 811 (835)
Q Consensus 735 ~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h~~~V~ 811 (835)
++++++. ++.|.+||+.++ +.+..+. +...+.+++|+|++.+|++++ .++.|.+||+.+++++.........+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 294 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPW 294 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccc
Confidence 9865543 778999999876 4444332 345788999999999998875 58899999999999874444557778
Q ss_pred EEEEeC
Q 003271 812 SLAAST 817 (835)
Q Consensus 812 ~la~sp 817 (835)
.|+++|
T Consensus 295 ~~~~~~ 300 (300)
T TIGR03866 295 GVVVRP 300 (300)
T ss_pred eeEeCC
Confidence 888865
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.2e-23 Score=231.59 Aligned_cols=258 Identities=19% Similarity=0.322 Sum_probs=223.4
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE-EEEeC-CCCEEEEEeCCCeEEEEEc
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s-l~fSp-dg~~Lasgs~Dg~I~VWd~ 584 (835)
..+.++|.|+++++|.. ++..+.+...+.+|.+-|.+ ++|.+ ++-.|++|+.|++|.+|..
T Consensus 26 ~~i~s~sRd~t~~vw~~-----------------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAK-----------------KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eEEeecCCCCceeeeec-----------------cCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 46889999999999922 34455666778889998888 88886 5556999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
....++.++++|...|+|+....++. +++||+|.+++||.+..- ...+.+|...|+++.+.|++ .+++|+.|++
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l---~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt 162 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL---VYSLQGHTASVWAVASLPEN--TYVTGSADKT 162 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh---hcccCCcchheeeeeecCCC--cEEeccCcce
Confidence 99999999999999999999888877 999999999999988753 45589999999999999986 5779999999
Q ss_pred EEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271 665 IRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs 741 (835)
|++|.- ++++++|.++ +..+++-++ ..|++++.||.|+.|++ +++++..+.+|.+.|+++....++..+++++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 999986 6778888776 667777776 56889999999999999 7899999999999999999777777788877
Q ss_pred -CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 742 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 742 -Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
|++++||+.. +|...+......|+++.+-++|+ |++|++||.|+||..+.
T Consensus 239 EDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 239 EDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999999875 67777877788999999999988 89999999999998764
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=212.25 Aligned_cols=275 Identities=20% Similarity=0.312 Sum_probs=221.0
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~ 637 (835)
-.||.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. +..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999999884 44444
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-------ecCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-------KSGATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 638 ~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
..++|+.+.|+|...+.++++-.+..-.+.++..++....- .....+..|.+.|+++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 57899999999987777766665665666666543222111 1123445689999999999999999999999
Q ss_pred CCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------CcceEEEee--cCCCceEEEEEeCCCCE
Q 003271 711 TQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 711 t~~~i~~l~~h~-~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~------~~~~i~~l~--~~~~~V~sv~fspdg~~ 780 (835)
+.+++..++-.. ..|..+.++-.|++|+.-+ |..|+.|++..-. ..+..+.+. .....-.+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999998887655 7899999999999999887 9999999987321 111111111 12334578999999999
Q ss_pred EEEEEcCC-eEEEEEcCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 781 LLVIGCYE-TLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 781 L~sgs~dg-~I~IwDl~~~~~~~-l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+++++... .++||....|.+++ +.+.+ ....++.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 98888543 89999999999884 45555 567889999988888887 788999993
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.8e-23 Score=208.69 Aligned_cols=274 Identities=18% Similarity=0.256 Sum_probs=214.1
Q ss_pred CcccCCCCCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec
Q 003271 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (835)
Q Consensus 473 ~~~~~~s~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~ 552 (835)
....++.++.+.+.|++.. +.+++.||.|++||+|........ . -+...
T Consensus 21 ev~~pP~DsIS~l~FSP~~--------------~~~~~A~SWD~tVR~wevq~~g~~----------------~-~ka~~ 69 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQA--------------DNLLAAGSWDGTVRIWEVQNSGQL----------------V-PKAQQ 69 (347)
T ss_pred ecCCCcccchheeEecccc--------------CceEEecccCCceEEEEEecCCcc----------------c-chhhh
Confidence 4555556677888888822 468889999999999955443111 0 13456
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEECCCeEEEEecCCCC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~--~Latgs~Dg~I~IWDl~t~~ 630 (835)
.|.++|.+++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+... .|+|||+|++|+.||.+...
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 899999999999999999999999999999999985 456678999999999988655 89999999999999999765
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eE----eecCceEEEEecCCCEEEEEEcCCcEE
Q 003271 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GV----FKSGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~----~~~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
. +..+. ..+.|++++.-. .+++.+..+..|.+|+++++... +. ++-.+.+++...+....+.|+.+|.+.
T Consensus 149 p-v~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 P-VATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred e-eeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 3 44433 456788877653 37778888999999999765432 22 334488999999988889999999999
Q ss_pred EEECCCC--eEEEEEcCCC---------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 706 ILDVETQ--VCRLKLQGHK---------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 706 IwDl~t~--~~i~~l~~h~---------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
|..+..+ +.-..|+.|. ..|.+|+|+|....|++.+ ||++.+||-... ..+.+...+..+|+++.
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCS 300 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeE
Confidence 9988875 3344455454 2577899999766666655 999999998766 56777788999999999
Q ss_pred EeCCCCEEEEEEc
Q 003271 774 FHPTFPSLLVIGC 786 (835)
Q Consensus 774 fspdg~~L~sgs~ 786 (835)
|+.+|.+++.+..
T Consensus 301 fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 301 FNRNGSIFAYALG 313 (347)
T ss_pred ecCCCCEEEEEee
Confidence 9999998776654
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.4e-23 Score=210.48 Aligned_cols=257 Identities=18% Similarity=0.305 Sum_probs=208.0
Q ss_pred EEEEeCCCeEEEEEcCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271 570 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (835)
Q Consensus 570 Lasgs~Dg~I~VWd~~t------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~ 637 (835)
|++|+....|.-+++.. ...+..+..|.+.|++++. ++.++|+|+.|.+|+|||+..... +..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-lg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-LGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-hccee
Confidence 56666666666665431 2235667889999999999 588999999999999999997654 77888
Q ss_pred cCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271 638 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQV 713 (835)
Q Consensus 638 ~h~~~V~sl~fsp~g~-~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~ 713 (835)
.|.+.|+++.|.+... .-|++|+.||.|.+|+....+++..++.+ ++.++++|.++..++.+.|+.++.|++-+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999998642 23559999999999999999988888744 9999999999999999999999999999887
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 714 ~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
.-..+. -....+.|.|+|.|.+++.+....|-||.+.+. ....++.. ...+.++.|. ++..|++|+.++.|.+|
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhhc-cccceeeeec-CCceEEEecCCceEEEe
Confidence 665554 233445599999999999999888999999876 33333322 2446666665 45679999999999999
Q ss_pred EcCCCcEE-EeccCCCCeeEEEEe--CCCCEEEEEECCCcEEEeC
Q 003271 794 NMTENKTL-TLSAHDKLVSSLAAS--TVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 794 Dl~~~~~~-~l~~h~~~V~~la~s--pdg~~LaSgs~DG~V~IWd 835 (835)
|.++..+. .+.+|+..|.++.+- |++.+|+|++.||.|+|||
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99987776 778999999999853 4677999999999999997
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=217.59 Aligned_cols=269 Identities=17% Similarity=0.203 Sum_probs=227.9
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..++.+|+.|.++.+|+-+ .-..+.+++||...|+.+.|+++...+++++.|..|+||...
T Consensus 231 ~~~ilTGG~d~~av~~d~~-------------------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKP-------------------SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVP 291 (506)
T ss_pred CCcceecCCCCceEEEecc-------------------hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccc
Confidence 3678999999999999322 224467889999999999999999999999999999999998
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
.......+..|.++|+.+..+|.|.||++++.|++..+.|++++........ ...-.+++++|||||- +|.+|..|+.
T Consensus 292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~ 370 (506)
T KOG0289|consen 292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV 370 (506)
T ss_pred cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence 8888888889999999999999999999999999999999999875322222 1234589999999975 8889999999
Q ss_pred EEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEE
Q 003271 665 IRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasg 740 (835)
|+|||+.+...+..|. +++..+.|+.+|-++++++.|+.|++||++..+...++.. ....+.+++|+..|.||+.+
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 9999999998887776 4599999999999999999999999999998887776653 33479999999999999998
Q ss_pred e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 741 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 741 s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
+ |=.|++++-.+. ...++..+..|.+..+.+.|.....++++++.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccc-cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 6 556666664442 34677788888889999999999999999999999888764
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.3e-24 Score=220.47 Aligned_cols=265 Identities=16% Similarity=0.238 Sum_probs=220.9
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
..+++|+.||.|++|.. ..-.++.++.+|.+.|..|+++. ..+++++.|++|+.|.++.
T Consensus 80 s~~aSGs~DG~VkiWnl-------------------sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNL-------------------SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hhhhccccCceEEEEeh-------------------hhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 56799999999999932 22245778899999999999987 6788999999999998765
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
..+.++.+ ...+..|.-+..+..++||+.+ |.|||..... ++..+.-....|.++.|+|....+|++|+.|+.|.
T Consensus 139 -~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 139 -PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred -Ccceeeec-cccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 46666643 4557778777778889998865 9999997544 57777777788999999999999999999999999
Q ss_pred EEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C
Q 003271 667 YWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 742 (835)
Q Consensus 667 iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D 742 (835)
+||++.+..++.+. .....++|+|..-.++++..|..++.||++.. +++..+.+|.+.|.++.|+|.|.-+++|+ |
T Consensus 214 LyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred EEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 99999998887654 45788999998788888999999999999975 66778889999999999999999999999 9
Q ss_pred CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 743 g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
.+|+||.++.+......++- .-..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus 294 ksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 294 KSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99999999887443333322 23568999999999999999999999999876544
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8e-23 Score=218.06 Aligned_cols=281 Identities=17% Similarity=0.254 Sum_probs=233.3
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCC
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~ 630 (835)
..+.|+||.|+|...+|++++.|++++||-++ ....+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 35789999999999999999999999999775 3455666666778999999999999 89999999999999999876
Q ss_pred ce-eEEeecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271 631 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 631 ~~-~~~~~~h~-~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
.. +....++. ..+..+.++++++ +|+..+..|.|.+....+++.+..++ +.+..++|+.++..|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22333333 3567788899977 66788889999999999999988776 55999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC---CCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271 707 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 707 wDl~t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~---~~~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
||++...+++.+....+ .-+++|.+.++.||++|+ .|.|.|||..+. ...+++..+..-...|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999998874222 235678889999999999 889999997653 3346777777778899999999999998
Q ss_pred EEEEcC--CeEEEEEcCCCcEEE-e---ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 782 LVIGCY--ETLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 782 ~sgs~d--g~I~IwDl~~~~~~~-l---~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.++.. ..+++-.+.+..+.. + ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 888764 589999988877662 2 23345799999999999999999999999995
No 112
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.5e-22 Score=223.08 Aligned_cols=334 Identities=21% Similarity=0.280 Sum_probs=246.9
Q ss_pred cCccccCCCcEEEeccCCCCEEEee-cCCC-CCCCcccccccccCCCceeE---EE-------EEecCCCCCEEEEEEeC
Q 003271 498 APNQLTDMDRFVDDGSLDDNVESFL-SPDD-ADPRDRVGRSAEVGKGFTFT---EF-------QLIPASTSKVESCHFSP 565 (835)
Q Consensus 498 ~~~~~~~~~~~l~tGs~D~~i~~~l-s~~~-~~~~~~~~~~~~~~~g~~~~---~i-------~~l~gH~~~V~sl~fSp 565 (835)
....+.+.+-+++++|-|..||+|. ...+ .+...+........+...+. ++ ..+.||.+-|+++.|+|
T Consensus 198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p 277 (764)
T KOG1063|consen 198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP 277 (764)
T ss_pred hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc
Confidence 3444445678999999999999992 2222 22111111111111122221 11 34559999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCe--EE-----EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEe
Q 003271 566 DGKLLATGGHDKKAVLWCTESFT--VK-----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF 636 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~--~i-----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~ 636 (835)
++..|++++.|+++.||..++.. -+ ....+.....+...|+|++..+++-+..|..++|....... ....+
T Consensus 278 ~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 278 EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence 99999999999999999876542 11 22233455688999999999999999999999999443222 23557
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEe------ecCceEEEEecCCCEEEEEEcCCcEEEEEC
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF------KSGATQMRFQPRLGRILAAAIENYISILDV 709 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl 709 (835)
.+|.+.|.+++|+|.|+ ++.+.+.|-+-|+|-.-..+ .-+.+ ....+|++|-+..-.++.|..+..+++|+.
T Consensus 358 SGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred ccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence 89999999999999998 55588889999998665111 11221 234778888776566777777778888854
Q ss_pred CC-------------------------------------------CeE--------------------------------
Q 003271 710 ET-------------------------------------------QVC-------------------------------- 714 (835)
Q Consensus 710 ~t-------------------------------------------~~~-------------------------------- 714 (835)
.. +..
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 20 000
Q ss_pred -EEEEcCCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 715 -RLKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 715 -i~~l~~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
+.++.||...|++++.+|++++++++. . ..|++|+..+- ..+..+..|.-.|+.++|+||+++|++++.|
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 122347888999999999999999987 2 27999999876 5666889999999999999999999999999
Q ss_pred CeEEEEEcCCCcEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 788 ETLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 788 g~I~IwDl~~~~~~-----~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.++.+|........ ....|...|+++.|+|++++++|++.|++|+||.
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 99999998554432 4678999999999999999999999999999994
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.7e-23 Score=223.49 Aligned_cols=289 Identities=18% Similarity=0.231 Sum_probs=233.5
Q ss_pred CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEECC
Q 003271 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSAD 618 (835)
Q Consensus 541 ~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~--~Latgs~D 618 (835)
..|+..+...++||++.|.||...|.|.+|++|+.||+|+||.+.++.++.++. ..+.|.||+|+|.+. .||++ .+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~ 463 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VG 463 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ec
Confidence 346667778899999999999999999999999999999999999999998885 456899999999754 34443 33
Q ss_pred CeEEEEecCCC------------------------------------CceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-
Q 003271 619 RTVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN- 661 (835)
Q Consensus 619 g~I~IWDl~t~------------------------------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~- 661 (835)
..+.|.+..-+ ..-++....|...|..+.||..|.++..++..
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 33444432111 11134555688999999999999977665543
Q ss_pred -CCcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEE
Q 003271 662 -NSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 737 (835)
Q Consensus 662 -Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~L 737 (835)
...|.|+++...+....| ++.+.++.|+|...++++++. ..|+|||+...+.++.+......|.+++.+|.|..|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 357899999876655444 466899999999888887765 789999999988888877778899999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC------CC-cEE---EeccC
Q 003271 738 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT------EN-KTL---TLSAH 806 (835)
Q Consensus 738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~------~~-~~~---~l~~h 806 (835)
+.++ |+.+..||+.-.. +...++..|...+++|+||+..+.+++|+.||++.||.-. .+ .++ .+.+|
T Consensus 623 i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 9999 9999999998654 5777888899999999999999999999999999888521 12 222 56788
Q ss_pred CCC----eeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 807 DKL----VSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 807 ~~~----V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
... |.++.|+|.-.+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 765 8999999999999999999999999
No 114
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=2.6e-22 Score=214.72 Aligned_cols=251 Identities=19% Similarity=0.350 Sum_probs=205.5
Q ss_pred EEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCe----------EEEEeccCCCCeEEEEECCC-CCEEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPS-LSRLA 613 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~----------~i~~l~~h~~~V~sv~fspd-g~~La 613 (835)
.++...-.|.+.|+.+.+-|.. .++|+++..+.|.|||..+.. +-.++.+|...-++++|++. .-+|+
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 3455556799999999999955 467778889999999986421 22377899998889999985 45799
Q ss_pred EEECCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEE
Q 003271 614 TSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR 687 (835)
Q Consensus 614 tgs~Dg~I~IWDl~t~~~------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~ 687 (835)
+++.|+.|++||+..... +...+.+|...|..++|++....+|+++++|+.+.|||++++.
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------- 261 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------- 261 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-------------
Confidence 999999999999975432 3567889999999999999989999999999999999988521
Q ss_pred EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecC
Q 003271 688 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCT 765 (835)
Q Consensus 688 fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~ 765 (835)
.++.....+|...|.|++|+|-+ .+||+|+ |++|++||+|+.. .+++++.+|
T Consensus 262 ------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H 315 (422)
T KOG0264|consen 262 ------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGH 315 (422)
T ss_pred ------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCC
Confidence 22334455699999999999955 5667777 9999999999875 589999999
Q ss_pred CCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCc---------------EEEeccCCCCeeEEEEeCCCC-EEEEEECC
Q 003271 766 GNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENK---------------TLTLSAHDKLVSSLAASTVNG-MVASASHD 828 (835)
Q Consensus 766 ~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~---------------~~~l~~h~~~V~~la~spdg~-~LaSgs~D 828 (835)
...|..|.|+|.. ..|++++.|+.+.|||+..-. ++...+|...|..+.|+|+.. .|++++.|
T Consensus 316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 9999999999976 567778889999999985311 135668999999999999887 67888999
Q ss_pred CcEEEeC
Q 003271 829 KCVKIWK 835 (835)
Q Consensus 829 G~V~IWd 835 (835)
+.+.||+
T Consensus 396 N~LqIW~ 402 (422)
T KOG0264|consen 396 NILQIWQ 402 (422)
T ss_pred ceEEEee
Confidence 9999995
No 115
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=7.1e-23 Score=226.57 Aligned_cols=242 Identities=22% Similarity=0.354 Sum_probs=211.9
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~ 629 (835)
+....|.|++.+|+|++||+|..-|+++||++.+.+....++.|...|.|+.|+.. .++|++++.|..|.|||+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 44567999999999999999999999999999999999999999999999999863 578999999999999999987
Q ss_pred CceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEe--------ecCceEEEEecCCCEEEEEEc
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVF--------KSGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~--------~~~i~~l~fsp~~~~ll~~s~ 700 (835)
-..+.++.+|...|+++.|.-.| +.-+++|+.|+.|.+--..+......| +..+..+++.|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 76788999999999999998765 345679999998875433321111111 234778999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271 701 ENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp 776 (835)
|..|+|||+.+++.++.|++ |.+....+...|.|.||++.. |.++.+||+.++ +|+....+|...|+.+.|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecc
Confidence 99999999999999999986 667788899999999999877 999999999999 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCC
Q 003271 777 TFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~ 797 (835)
|-++|++++.||.|.||.+..
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999854
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-21 Score=201.89 Aligned_cols=246 Identities=19% Similarity=0.282 Sum_probs=201.9
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-CCCcE
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 665 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I 665 (835)
.+..+.+......|.++.|+++|.+|++++.|.+|+|||..+++. ++++..+.-.|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556666778999999999999999999999999999998875 7777777778888888776555554332 48899
Q ss_pred EEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 666 RYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
++.++.+.+.++.|.++ |..++.+|-++.+++++.|++|++||++..++...+... .-..++|+|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence 99999999999999877 889999999999999999999999999988887766533 334578999999999998
Q ss_pred CCeEEEEEcCCCCCc-ceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC---eeEEEE
Q 003271 742 DELVRVWSIGSGSKG-ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLAA 815 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~-~~i~~l~-~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~---V~~la~ 815 (835)
.+.|++||++.-... .....+. ......+.+.|+|+|++|+.++..+.+++.|.-+|.+. .+..+... -...+|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 449999999986331 2222222 44677899999999999999999999999999999877 44444322 257789
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003271 816 STVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 816 spdg~~LaSgs~DG~V~IWd 835 (835)
+||+++|++|+.||+|.+|+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCCcEEEEecCCCcEEEEE
Confidence 99999999999999999996
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.8e-23 Score=203.16 Aligned_cols=246 Identities=20% Similarity=0.278 Sum_probs=203.0
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---eEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWD 625 (835)
-..|.+.|..+...--|+.|||++.|++|+||.+.+. .++.+|.+|.++|+.++|.. -|.+||++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999889999999999999999998753 57889999999999999965 599999999999999999
Q ss_pred cCCCCce-eEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCC------eeeeEeecCceEEEEecC---C--
Q 003271 626 TENPDYS-LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG------SCAGVFKSGATQMRFQPR---L-- 692 (835)
Q Consensus 626 l~t~~~~-~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~------~~~~~~~~~i~~l~fsp~---~-- 692 (835)
-.++... ...+..|...|++++|.|.+ ..+|++++.||.|.|.+.+.. +....+.-++++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 9887542 35567899999999999975 346778889999999998764 223344566899999887 3
Q ss_pred ---------CEEEEEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCC----CEEEEEe-CCeEEEEEcCCCCCc
Q 003271 693 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG 756 (835)
Q Consensus 693 ---------~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg----~~Lasgs-Dg~I~IwDl~t~~~~ 756 (835)
..|++|+.|+.|+||+...+ ....++.+|...|+.++|.|.- .+|++|+ ||+|.||..+.....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 56999999999999999875 3344588999999999999964 5789999 999999988743222
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
-....+......+..+.|+..|..|++++.|+.|.+|.-.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2333344456789999999999999999999999999754
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=2.2e-20 Score=200.89 Aligned_cols=294 Identities=18% Similarity=0.291 Sum_probs=232.2
Q ss_pred ccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE
Q 003271 536 SAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614 (835)
Q Consensus 536 ~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat 614 (835)
.|....+..++....++.+. .-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+|-
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS- 303 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS- 303 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-
Confidence 34455555555666666554 5699999999985 67999999999999999888887779999999999999986555
Q ss_pred EECCCeEEEEecCCCC----------------------c-----------------eeEEeecCCCCeEEEEEcCCCCcE
Q 003271 615 SSADRTVRVWDTENPD----------------------Y-----------------SLRTFTGHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 615 gs~Dg~I~IWDl~t~~----------------------~-----------------~~~~~~~h~~~V~sl~fsp~g~~l 655 (835)
|+.|..|..||-.-.+ . ......+|......++.+|+.+ .
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q 382 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-Q 382 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-h
Confidence 9999999999832100 0 0012345788889999999865 6
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271 656 LCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 735 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~ 735 (835)
+++|+.|+.+++|+-...+..+.+..+..++.|+|.+ .+++|+..|...+.|.++...+..-.. ..+++++.|+|+|.
T Consensus 383 ~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred eeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence 6799999999999954455556677889999999998 999999999999999999666655554 88999999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc---------------
Q 003271 736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------- 799 (835)
Q Consensus 736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--------------- 799 (835)
+|+.|+ |+.|+||.+..... +....-.++..+|+.+.|++|+.+|.+-+.|-.|..|....-+
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTC 539 (626)
T ss_pred EEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEE
Confidence 999999 99999999987643 2222334455899999999999998888888888888432100
Q ss_pred -------------------------------------------------EEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271 800 -------------------------------------------------TLTLSAHDKLVSSLAASTVNGMVASASHDKC 830 (835)
Q Consensus 800 -------------------------------------------------~~~l~~h~~~V~~la~spdg~~LaSgs~DG~ 830 (835)
.....+|.+.|++++|..+..+|++.+.|.+
T Consensus 540 ~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~S 619 (626)
T KOG2106|consen 540 TLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTS 619 (626)
T ss_pred EEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCce
Confidence 0134468888999999998888888889999
Q ss_pred EEEeC
Q 003271 831 VKIWK 835 (835)
Q Consensus 831 V~IWd 835 (835)
|..|+
T Consensus 620 i~qW~ 624 (626)
T KOG2106|consen 620 IMQWR 624 (626)
T ss_pred EEEEE
Confidence 99996
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3e-22 Score=224.89 Aligned_cols=273 Identities=20% Similarity=0.379 Sum_probs=214.1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----eEEEEeccC---CCCeEEEEECC-CCCEEEEEECCCeEEEEecCC
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEH---TQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~i~~l~~h---~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t 628 (835)
.+.+|...++-.-|+.++. ..++||.+... ++...++.. ...+.+|+|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3556677788777887775 46778866532 222222211 12455688875 467999999999999999986
Q ss_pred --CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCC-EEEEEEcCC
Q 003271 629 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLG-RILAAAIEN 702 (835)
Q Consensus 629 --~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~-~ll~~s~dg 702 (835)
....+..|..|...|.+++|++...++|++|+.||+|++||++..+...++.+ .+..+.|+|... .|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 23345678899999999999999999999999999999999998887776654 488999999764 555666679
Q ss_pred cEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271 703 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 703 ~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~ 780 (835)
.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+ |+.|+|||+.+... ..++++. ...+|.++.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999965 67778889999999999999999999999 99999999987543 3444443 3678999999999876
Q ss_pred EEEEEc---CCeEEEEEcCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEE
Q 003271 781 LLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 832 (835)
Q Consensus 781 L~sgs~---dg~I~IwDl~~~~~~--~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~ 832 (835)
.++.+. |-.|+|||++..-+- .+..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 555443 559999999876543 7889999999999975 445889999999864
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.6e-22 Score=199.04 Aligned_cols=241 Identities=23% Similarity=0.394 Sum_probs=199.8
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEEC
Q 003271 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI 670 (835)
Q Consensus 594 ~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl 670 (835)
..|.+.|.++...--|++|+|++.|++|+|+.+++.. ..+..+.+|.++|..++|. |.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4689999998888889999999999999999998765 5678999999999999995 555669999999999999999
Q ss_pred CCCeeee-----EeecCceEEEEecCC--CEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCC---C---
Q 003271 671 NNGSCAG-----VFKSGATQMRFQPRL--GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 734 (835)
Q Consensus 671 ~s~~~~~-----~~~~~i~~l~fsp~~--~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspd---g--- 734 (835)
..+.-.+ .+...+++++|.|.+ -.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 9885433 234668999998874 56788999999999988754 333455679999999999986 4
Q ss_pred --------CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEEcCCC---
Q 003271 735 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 798 (835)
Q Consensus 735 --------~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg----~~L~sgs~dg~I~IwDl~~~--- 798 (835)
+.|++|+ |..|+||+..++ ....-.++.+|...|..++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4588887 999999999886 334445689999999999999974 57999999999999987522
Q ss_pred -cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 799 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 799 -~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+...+......+..+.|+..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223445678899999999999999999999999995
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5e-22 Score=212.65 Aligned_cols=238 Identities=22% Similarity=0.276 Sum_probs=202.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC------
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------ 628 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t------ 628 (835)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+-|+.+|+||+.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 56799999999999999998999999999999999999999999999999999999999999999999998642
Q ss_pred --CCceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCc
Q 003271 629 --PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 629 --~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~ 703 (835)
...+++.+..|.-+|+++...+.+ +..+++++.|.+|++||+..+..+..+. ..+.+++++|.+..+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 224578899999999999987753 4468899999999999999999887654 55899999999999999999999
Q ss_pred EEEEECCCC----------------eEEEEEcCCCC--CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271 704 ISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 764 (835)
Q Consensus 704 I~IwDl~t~----------------~~i~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~ 764 (835)
|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ ||.|+|||+.+. .+++++..
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~~ 317 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQT 317 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHhh
Confidence 999887532 34556778888 999999999999999999 999999999887 78888776
Q ss_pred CCCceEEEEEeCCCCEEEEEEcC-CeEEEEEc
Q 003271 765 TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM 795 (835)
Q Consensus 765 ~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl 795 (835)
..++|+.+.+.|-.+.++.+... ..+-.|++
T Consensus 318 ~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 318 SKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred hccccceeEeeccccceecccccCccCCchHh
Confidence 78899999997765544443222 24444443
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.2e-21 Score=219.41 Aligned_cols=274 Identities=14% Similarity=0.228 Sum_probs=216.4
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~ 630 (835)
.+|+...+.|+|.++|++|++++.||.|++|+...- +.-.++..+...|.+++.. +.+|++|+.+++|.+|.+.++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 478999999999999999999999999999987665 4444454478888888875 4599999999999999998876
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAIENYISIL 707 (835)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~Iw 707 (835)
. -..+....-++.+++|+-+|+ .++.|+.|-.|++.++.+......+ ++++.++.|+|.+++|++.+.||.|+||
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 334555667899999999977 6668888999999999877655554 5679999999999999999999999999
Q ss_pred ECCCCeEEEEEcCC--------CCCeEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271 708 DVETQVCRLKLQGH--------KNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778 (835)
Q Consensus 708 Dl~t~~~i~~l~~h--------~~~I~sl~fspdg-~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg 778 (835)
|+.++.+...+.+- ...+..++|+|+| .+++.+.|+.|++|+..+......+ ....+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-cccccccceEEEEEcCCC
Confidence 99998877766531 3456678999995 5555555999999999887432222 223344559999999999
Q ss_pred CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 779 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 779 ~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.||++++.+|.|.|||+++... ......|++++|.|+...|-.-..-|+..+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998322 333567999999999886655544554433
No 123
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4e-21 Score=196.20 Aligned_cols=255 Identities=20% Similarity=0.323 Sum_probs=197.0
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC----CCeEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 003271 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~----t~~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWD 625 (835)
.+|.+-|.|+.|...|+.+|+|+.|++|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|++|.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 5799999999999999999999999999999954 4567778889999999999965 389999999999999997
Q ss_pred cCCCC--------ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEE
Q 003271 626 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRIL 696 (835)
Q Consensus 626 l~t~~--------~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll 696 (835)
-.... ....++....+.|++|.|.|.. ...+++++.||.||||+.-..-.+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL-------------------- 149 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL-------------------- 149 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc--------------------
Confidence 52111 1234566677889999999863 235778889999999987543221
Q ss_pred EEEcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEEcCCCC-CcceEEEeec
Q 003271 697 AAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 764 (835)
Q Consensus 697 ~~s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspd---g~~LasgsDg------~I~IwDl~t~~-~~~~i~~l~~ 764 (835)
.-|.+...- .+.....+..+..|+.|++. ..+|++|+|. .++||...... +...+.++..
T Consensus 150 --------s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 150 --------SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred --------ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 112211100 00011125667789999874 4678888865 89999987664 4567778889
Q ss_pred CCCceEEEEEeCC----CCEEEEEEcCCeEEEEEcCCCc--------------------EE-EeccCCCCeeEEEEeCCC
Q 003271 765 TGNKFHSCVFHPT----FPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 819 (835)
Q Consensus 765 ~~~~V~sv~fspd----g~~L~sgs~dg~I~IwDl~~~~--------------------~~-~l~~h~~~V~~la~spdg 819 (835)
|..+|+.++|.|+ ...|++++.|| |+||++.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999996 34688999999 9999987311 11 467899999999999999
Q ss_pred CEEEEEECCCcEEEeC
Q 003271 820 GMVASASHDKCVKIWK 835 (835)
Q Consensus 820 ~~LaSgs~DG~V~IWd 835 (835)
.+|++.|+||.||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999995
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2e-21 Score=208.33 Aligned_cols=234 Identities=19% Similarity=0.353 Sum_probs=200.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 632 (835)
.+-|.+|.+.|||+.|++|+.-.+|.|||+..... ...+....-..++++.+||.+..++++.||.|.|||+.+.. .
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence 45699999999999999999999999999975443 34444444567889999999999999999999999999765 5
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--EeecCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKSGATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
++.|.+|.+.+.||+++++|. -|.+|+-|.+|+.||+++++.+. .|...|.++.++|.+.++++|-.++.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 899999999999999999987 45699999999999999988764 456779999999999999999999999998876
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003271 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 789 (835)
Q Consensus 711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~ 789 (835)
..+ .+.+.-|.+.|.++.|.+.|+++++.+ |+.+..|...-+ ..+.... ....|.+|.++.+.++|++|+.|..
T Consensus 623 kp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 623 KPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred Ccc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence 543 345556999999999999999999988 999999998877 4555444 3678999999999999999999988
Q ss_pred EEEEEc
Q 003271 790 LELWNM 795 (835)
Q Consensus 790 I~IwDl 795 (835)
-.||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888765
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.2e-23 Score=229.92 Aligned_cols=251 Identities=22% Similarity=0.375 Sum_probs=221.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl 646 (835)
+.+++.+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.+|
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 33455555666788888654 446888888988877789999999999999999987664 56689999999999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~ 723 (835)
.|++. +.+|++|+.+|+|++||++..+.++++.++ +..+.|+|.+.+++.++.|..+.+||++...|.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 458889999999999999999988877654 88899999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-
Q 003271 724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 801 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~- 801 (835)
.|.++.|+|+|++++.++ |.+++|||+..+ +.+.+|..|...+.++.|+|..-.++.|+.|++|++||+++-+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 799999999888 888999999999999999999999999999999999999988887
Q ss_pred EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271 802 TLSAHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 802 ~l~~h~~~V~~la~spdg~~LaSgs~D 828 (835)
........|.+++|++++..+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 455557889999999999998888754
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=4.9e-20 Score=208.54 Aligned_cols=278 Identities=19% Similarity=0.306 Sum_probs=219.6
Q ss_pred cCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
+...+.|+++. +|.. +.++.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+++..+
T Consensus 156 ~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 156 KVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred eccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence 33333477764 4433 34888999999999999999999999999999999999998889999999999999999987
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEE
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
+. +..+....+.|++++|..||+.++++++..|.+.+||++..+...... +.+....|.+....+++++.|+.++
T Consensus 235 ki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 235 KI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred cE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 74 677775569999999999999999999999999999999887665443 3355555555555555555555444
Q ss_pred EE--ECCCC-----------------------------------------------------------------------
Q 003271 706 IL--DVETQ----------------------------------------------------------------------- 712 (835)
Q Consensus 706 Iw--Dl~t~----------------------------------------------------------------------- 712 (835)
+| |...+
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 33 31000
Q ss_pred ---------------------------------------eE-EEEEcCCC------CCeEEEEEcCCCCEEEEEe-CCeE
Q 003271 713 ---------------------------------------VC-RLKLQGHK------NQVHSVCWNTSGEYLASVS-DELV 745 (835)
Q Consensus 713 ---------------------------------------~~-i~~l~~h~------~~I~sl~fspdg~~Lasgs-Dg~I 745 (835)
.. .+.+ .+. ..+++++.+++|++.+.|+ .|.|
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 00 0000 111 4578899999999999988 9999
Q ss_pred EEEEcCCCCCcceEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE----------------------
Q 003271 746 RVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT---------------------- 800 (835)
Q Consensus 746 ~IwDl~t~~~~~~i~~l---~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~---------------------- 800 (835)
.+|++.++ .....+ ..|..+|+.++....++.+++++.+|.+++||..+...
T Consensus 473 d~fNmQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 473 DRFNMQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL 549 (910)
T ss_pred EEEEcccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence 99999988 444445 57899999999999999999999999999999866431
Q ss_pred -------------------E-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 801 -------------------L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 801 -------------------~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+ .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 2356999999999999999999999999999998
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=215.39 Aligned_cols=274 Identities=23% Similarity=0.334 Sum_probs=209.5
Q ss_pred EEEEeC---CCCEEEEEeCCCeEEEEEcCCCeEE------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271 560 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 560 sl~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~i------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~ 630 (835)
++.|++ ....|+.+.+||.|.++|....... .....|...|.++.|.|....|++++.|.++++||+.+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356665 3457999999999999998754332 4456799999999999987899999999999999999876
Q ss_pred ceeE--EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----------eEee------------------
Q 003271 631 YSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----------GVFK------------------ 680 (835)
Q Consensus 631 ~~~~--~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~----------~~~~------------------ 680 (835)
. .. .+.+|...|.+++|.|.+..+||+|+.||.|.|||++....- ..++
T Consensus 134 l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 134 L-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred e-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 4 43 489999999999999999999999999999999999743200 0000
Q ss_pred --cCceE---EEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEE--------cCC---CCCeEEEEEcCCCCEEEEEe-C
Q 003271 681 --SGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-D 742 (835)
Q Consensus 681 --~~i~~---l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l--------~~h---~~~I~sl~fspdg~~Lasgs-D 742 (835)
..+.. +.+..|...|++++. |+.|+|||+++....... ..| ...+.+++.+..|.+|++.+ |
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 11222 445667788888776 999999999976554332 223 33577888888888877665 9
Q ss_pred CeEEEEEcCCCCCcceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCC
Q 003271 743 ELVRVWSIGSGSKGECIHELSCTGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV 818 (835)
Q Consensus 743 g~I~IwDl~t~~~~~~i~~l~~~~~~--V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spd 818 (835)
+.|++|++.+... ..+..+.++... ...-..+|++.+|++|+.|...++|.+..-..- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 9999999987532 333333333222 223356899999999999999999999876643 77899999999999984
Q ss_pred C-CEEEEEECCCcEEEeC
Q 003271 819 N-GMVASASHDKCVKIWK 835 (835)
Q Consensus 819 g-~~LaSgs~DG~V~IWd 835 (835)
. .-+++|++|-+++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 3 3577889999999996
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=7.9e-21 Score=192.65 Aligned_cols=293 Identities=20% Similarity=0.321 Sum_probs=218.3
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCC--cccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEE
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPR--DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~--~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~V 581 (835)
..+++.+|+.|+.|.+|+.....+-. ..+.+. ........-.+|.-.|.++.|-| |.-.+.+++.|.+++|
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~------~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKV 128 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH------KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKV 128 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceehe------eeeccccCCccceeeeeeeEEeeecCceeecccccceEEE
Confidence 35799999999999999665543221 111110 00011112347888999999999 6668899999999999
Q ss_pred EEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 582 WCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 582 Wd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
||+.+......|+ .++.|++-+++|- ..++|+|..|-.|++.|+.++.+ .+++.+|...|.++.|+|..+.+|++
T Consensus 129 WDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLat 206 (397)
T KOG4283|consen 129 WDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLAT 206 (397)
T ss_pred eecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEe
Confidence 9999998888875 5678999999983 44677888888999999999885 89999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCCC
Q 003271 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGE 735 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~fspdg~ 735 (835)
|+.||.|++||++... |.+++.|...++ .+..-..|.+.|..++|..++.
T Consensus 207 gsaDg~irlWDiRras---------------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 207 GSADGAIRLWDIRRAS---------------------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred cCCCceEEEEEeeccc---------------------------ceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 9999999999998531 222333333221 1222345899999999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC
Q 003271 736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL 809 (835)
Q Consensus 736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~----~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~ 809 (835)
++++++ |..+++|+..++.....-..-..|.. .+. +. +-+...++..-.++.+.++++-++..+ .+..|-..
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~ 337 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR 337 (397)
T ss_pred hhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence 999998 99999999988753211111111111 111 22 334444555555689999999888877 67789899
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 810 VSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 810 V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
|.|.++-|+-....+|..|+.|..|
T Consensus 338 i~c~~~~~~fq~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 338 INCAAYRPDFEQCFTGDMNGNIYMW 362 (397)
T ss_pred eeEEeecCchhhhhccccCCccccc
Confidence 9999999998899999999999988
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=3.8e-21 Score=205.86 Aligned_cols=249 Identities=19% Similarity=0.330 Sum_probs=200.3
Q ss_pred ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEE
Q 003271 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAV 580 (835)
Q Consensus 502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~ 580 (835)
+.....+|++++..+.+-+|+...........+ .+.+-..+.+|.+.-++++|++... .|++|+.|++|+
T Consensus 133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~ 203 (422)
T KOG0264|consen 133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC 203 (422)
T ss_pred CCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence 445567899999999999996655543322221 3445567889999899999999543 789999999999
Q ss_pred EEEcCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCC-CCceeEEeecCCCCeEEEEEcCC
Q 003271 581 LWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPS 651 (835)
Q Consensus 581 VWd~~t~-------~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t-~~~~~~~~~~h~~~V~sl~fsp~ 651 (835)
+||+... .....+.+|...|.+++|++- ..+|++++.|+.+.|||+++ ...+.....+|...|.|++|+|-
T Consensus 204 lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 204 LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred EEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence 9998643 234677899999999999994 66889999999999999996 33346778899999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 731 (835)
Q Consensus 652 g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs 731 (835)
+..+|++|+.|++|++||+++.+ .+++++.+|...|.+|.|+
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~--------------------------------------~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLN--------------------------------------KPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred CCceEEeccCCCcEEEeechhcc--------------------------------------cCceeccCCCcceEEEEeC
Confidence 99999999999999999998632 2567788899999999999
Q ss_pred CCCC-EEEEEe-CCeEEEEEcCCCC-----------CcceEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEEcCC
Q 003271 732 TSGE-YLASVS-DELVRVWSIGSGS-----------KGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTE 797 (835)
Q Consensus 732 pdg~-~Lasgs-Dg~I~IwDl~t~~-----------~~~~i~~l~~~~~~V~sv~fspdg~~L~-sgs~dg~I~IwDl~~ 797 (835)
|... .|++++ |+.+.|||+..-. ..+.+....+|...|..+.|+|..++++ +++.|+.+.||.+..
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9765 455555 9999999997532 2345677889999999999999998754 566778999999864
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.4e-21 Score=204.84 Aligned_cols=286 Identities=15% Similarity=0.230 Sum_probs=226.4
Q ss_pred CcccCCCCCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec
Q 003271 473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (835)
Q Consensus 473 ~~~~~~s~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~ 552 (835)
+..++.....+.+.|.+.. .++.+++.|+++++|-. +|..-..+..+.
T Consensus 207 Na~~ps~~~I~sv~FHp~~---------------plllvaG~d~~lrifqv-----------------DGk~N~~lqS~~ 254 (514)
T KOG2055|consen 207 NAAHPSHGGITSVQFHPTA---------------PLLLVAGLDGTLRIFQV-----------------DGKVNPKLQSIH 254 (514)
T ss_pred ccCCcCcCCceEEEecCCC---------------ceEEEecCCCcEEEEEe-----------------cCccChhheeee
Confidence 3334444455566665544 68899999999999922 122223455566
Q ss_pred CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEE--EEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 553 ASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i--~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
-...+|.+++|.|+|. .+++++....+++||+.+.+.. ..+.++. ..+.....++++.+|+..+..|.|.|....+
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 6677899999999999 8999999999999999987654 3334444 3577888999999999999999999999988
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec----CceEEEEecCCCEEEEEEcCCcE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----GATQMRFQPRLGRILAAAIENYI 704 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----~i~~l~fsp~~~~ll~~s~dg~I 704 (835)
+.. +..++ -.+.|..++|+.+++.++++ +.+|.|++||++...+++.+.. +.+.+|.++++.++++|+..|.|
T Consensus 335 ~el-i~s~K-ieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 335 KEL-ITSFK-IEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred hhh-hheee-eccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence 764 44444 45789999999998766655 4588999999999999988863 25678888999999999999999
Q ss_pred EEEECCC------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEe---ecCCCceEEE
Q 003271 705 SILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL---SCTGNKFHSC 772 (835)
Q Consensus 705 ~IwDl~t------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l---~~~~~~V~sv 772 (835)
.|||.++ .+++..+..-...|+++.|++|..+|+.++ ++.+++-.+.+. .....+ ...-+.|+|+
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEE
Confidence 9999763 467777777788999999999999999988 678999988776 233333 3344678999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 773 VFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
+|+|.+.++++|..+|.|.+|.+.
T Consensus 489 aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 489 AFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EecCCCceEEeecCCCceeeEeec
Confidence 999999999999999999999874
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.7e-23 Score=228.86 Aligned_cols=237 Identities=26% Similarity=0.422 Sum_probs=215.4
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
+.+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||+
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 34455689999999999778899999999999999999888888889999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCc
Q 003271 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~ 703 (835)
+..+. ++++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.++++ +..++|+|+|.+++.++.|..
T Consensus 100 eeAk~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 100 EEAKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 98764 889999999999999999987 5589999999999999998899888865 677889999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~ 782 (835)
++|||+..++....|..|...+.++.|+|..-+++.|+ |++|++||+++. ..+.........|.+.+|+|++..++
T Consensus 178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeee
Confidence 99999999999999999999999999999999999999 999999999876 67777777788999999999999877
Q ss_pred EEEcCC
Q 003271 783 VIGCYE 788 (835)
Q Consensus 783 sgs~dg 788 (835)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 776553
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=8.6e-20 Score=196.44 Aligned_cols=291 Identities=13% Similarity=0.164 Sum_probs=222.4
Q ss_pred CcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEE---eccC-CCCeEEEEE
Q 003271 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST---LEEH-TQWITDVRF 605 (835)
Q Consensus 530 ~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~---l~~h-~~~V~sv~f 605 (835)
.+.+..+|+|.++....+++ .....|..+.|+|.+.-|++....+.+.+|+.+.+.+.++ ++.+ ...|.|++|
T Consensus 178 ~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred CccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 34455566666665555554 4566799999999766555555578999999998776644 3333 367999999
Q ss_pred CCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----------
Q 003271 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---------- 675 (835)
Q Consensus 606 spdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---------- 675 (835)
.++|. ++||..+|.|.||+..+.+.....+ .|.+.|.+++...+|. |++|+.|..|..||-.-.+.
T Consensus 255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 255 LENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred cCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcC
Confidence 99875 7899999999999998766544444 9999999999998875 44699999999999321110
Q ss_pred -eeE---------------------ee-----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC
Q 003271 676 -AGV---------------------FK-----------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 722 (835)
Q Consensus 676 -~~~---------------------~~-----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~ 722 (835)
++. +. .....++.+|+.+.+++++.|+.+++|+ ..+.+.... ..
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence 000 00 1244577888899999999999999999 344444333 45
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.++.|+.|+|.| .|+.|. .|...|.|.++. ..+..... ..+++++.|+|+|.+|++|+.|+.|+||.+..+...
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 788999999999 888888 999999999885 44444444 889999999999999999999999999998765432
Q ss_pred --Ee-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 802 --TL-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 802 --~l-~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+. ..|..+|+.+.|++|+++|.+-+.|-.|..|+
T Consensus 483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 483 YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 22 23448999999999999999999999999984
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.1e-20 Score=191.46 Aligned_cols=268 Identities=16% Similarity=0.251 Sum_probs=207.9
Q ss_pred ccCCCCCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCC
Q 003271 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (835)
Q Consensus 475 ~~~~s~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH 554 (835)
..++....+.+.|++.+ ..|..++.|+.+++|..... +.+..-.|
T Consensus 9 ~npP~d~IS~v~f~~~~---------------~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~ 53 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSS---------------SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKH 53 (323)
T ss_pred CCCChhceeeEEEcCcC---------------CcEEEEeccCcEEEEeccch--------------------hhhhheec
Confidence 33344455666666433 56677889999999933222 22333468
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
..+|.+|+|.++ ..+++|+.||.|+++|+.++... .+..|...|.||.+++....+++|++|++|++||..... ...
T Consensus 54 ~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~ 130 (323)
T KOG1036|consen 54 GAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVG 130 (323)
T ss_pred CCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccc
Confidence 899999999974 57889999999999999987655 455799999999999988899999999999999998633 233
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EeecCceEEEEecCCCEEEEEEcCCcEEEEEC
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKSGATQMRFQPRLGRILAAAIENYISILDV 709 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~-----~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl 709 (835)
.+. ....|.|+....+ .|+.|..|..|.+||+++..... .++-.+.++++.|++.-+++++.||.|.+=.+
T Consensus 131 ~~d-~~kkVy~~~v~g~---~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 131 TFD-QGKKVYCMDVSGN---RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF 206 (323)
T ss_pred ccc-cCceEEEEeccCC---EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence 333 3348999887733 56677789999999999865443 34455899999999899999999999998777
Q ss_pred CCC----eEEEEEcCCC---------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271 710 ETQ----VCRLKLQGHK---------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 710 ~t~----~~i~~l~~h~---------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs 775 (835)
+.. .....|+.|. .+|.+++|+|-...|++|+ ||.|.+||+.+. +.+..+......|.+++|+
T Consensus 207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsfs 283 (323)
T KOG1036|consen 207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSFS 283 (323)
T ss_pred CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEec
Confidence 655 3444555553 3789999999988899988 999999999887 5666666667789999999
Q ss_pred CCCCEEEEEEcC
Q 003271 776 PTFPSLLVIGCY 787 (835)
Q Consensus 776 pdg~~L~sgs~d 787 (835)
.+|..|+++++.
T Consensus 284 ~dG~~LAia~sy 295 (323)
T KOG1036|consen 284 MDGSLLAIASSY 295 (323)
T ss_pred cCCCeEEEEech
Confidence 999999998863
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=214.94 Aligned_cols=236 Identities=17% Similarity=0.255 Sum_probs=202.1
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 003271 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (835)
Q Consensus 594 ~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~ 673 (835)
..|+...+.|+|.|+|.+|++++.||.|++|+.......-.++..+...|.+++.... .|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence 3688889999999999999999999999999987652223334447788888887643 6779999999999999876
Q ss_pred e---eeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003271 674 S---CAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749 (835)
Q Consensus 674 ~---~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwD 749 (835)
+ .+..|..++.+++|+.+|.++++|+.|-.|++.++.+......+.+|..+|.+|.|+|.+.+|++.+ ||.|+|||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 5 5677888999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred cCCCCCcceEEEeec-------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE---EeccCCCCeeEEEEeCC
Q 003271 750 IGSGSKGECIHELSC-------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTV 818 (835)
Q Consensus 750 l~t~~~~~~i~~l~~-------~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l~~h~~~V~~la~spd 818 (835)
+.++. +.+++.. . ...+..++|+|++..+++.+.|+.|++|+..++... ....|...+.++.|+|+
T Consensus 167 ~~~~~---~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 167 LQDGI---LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred cccch---hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 99873 3333221 1 345677899999999999999999999999998865 33345556999999999
Q ss_pred CCEEEEEECCCcEEEeC
Q 003271 819 NGMVASASHDKCVKIWK 835 (835)
Q Consensus 819 g~~LaSgs~DG~V~IWd 835 (835)
|+|||+++.||.|.|||
T Consensus 244 G~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWN 260 (933)
T ss_pred CcEEeeeccCCcEEEEe
Confidence 99999999999999997
No 135
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.7e-21 Score=194.92 Aligned_cols=256 Identities=20% Similarity=0.311 Sum_probs=212.1
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEE
Q 003271 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~f 648 (835)
.|++.-.+++++ ..+++.+.+|.+.|+.++......++.+++.|.+.+||.++++.+ +..+.+|.+.|++|.|
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-L~~Y~GH~GSVNsikf 198 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-LATYTGHTGSVNSIKF 198 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-eeeecccccceeeEEe
Confidence 345555555532 245677889999999999988778999999999999999999874 8999999999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEE------CCCC--------e--------------------------eeeEeec---CceE
Q 003271 649 HPSKEDLLCSCDNNSEIRYWS------INNG--------S--------------------------CAGVFKS---GATQ 685 (835)
Q Consensus 649 sp~g~~ll~sgs~Dg~I~iwD------l~s~--------~--------------------------~~~~~~~---~i~~ 685 (835)
++.+. ++++++.|++..||. +... + .+..+.+ .+.+
T Consensus 199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99865 788999999999997 2110 0 0011111 1444
Q ss_pred EEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271 686 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 764 (835)
Q Consensus 686 l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~ 764 (835)
..|-..+..+++++.|.+..+||+++++.+..+.+|...++.++-+|..+++++.+ |.+.++||++.. ...+..|.+
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQG 355 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQG 355 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecc
Confidence 55777789999999999999999999999999999999999999999999999999 999999999843 467788999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~-~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|...|+++.|..+.+ +++|+.|.+|+|||+++... +......++++.++++..+.+|+.--++..|++||
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 999999999998876 89999999999999988664 45556678899999998777888888888899987
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=201.86 Aligned_cols=256 Identities=13% Similarity=0.183 Sum_probs=204.0
Q ss_pred EeCC-CeEEEEEcCCCeEEEEeccCCC-CeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 003271 573 GGHD-KKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (835)
Q Consensus 573 gs~D-g~I~VWd~~t~~~i~~l~~h~~-~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs 649 (835)
++.| ..+.+||+.+|.....+++... .-.++..- .+.+++++.. ...|.+|.+..... ...+..-.++|.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~-~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ-VVQYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh-hhhhcccccceeeeecC
Confidence 3344 4599999999999888876522 11112111 2356666644 45899999986554 23344466889999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECC---------CCeEEEE
Q 003271 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 717 (835)
Q Consensus 650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~---------t~~~i~~ 717 (835)
|.|. +++.|+..|.|++|.+.+|..+..+..+ ++++.|+-++.+|++++.||.|.+|++- +-++++.
T Consensus 91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9976 5557778999999999999998887654 9999999999999999999999999764 3467888
Q ss_pred EcCCCCCeEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 718 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 718 l~~h~~~I~sl~fspd--g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
|..|.-+|+.+...+. ..+|++++ |.++++||+..+ ..+.++. ....+.+|+.+|-++.+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 9999999999988665 46788888 999999999988 5555554 467899999999999999999999999988
Q ss_pred cCCCc-----------------EEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 795 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 795 l~~~~-----------------~~~l~~h~~--~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.... ...+.+|.+ .|+|++++.||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 75432 125678888 999999999999999999999999997
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=201.80 Aligned_cols=277 Identities=18% Similarity=0.234 Sum_probs=227.4
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-eEEEEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
.+.+.-...+|.|++|+.+.+.||.+-.||.|.||++... -+...+.++. ..|.+++|+ ++..|++.+.+|.|.-||
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD 96 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence 3444455678999999999999999999999999999764 3445566554 579999999 556788889999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----ecCceEEEEecCCCEEEEEEc
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KSGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----~~~i~~l~fsp~~~~ll~~s~ 700 (835)
+.+.+. +..+....+.|++++.+|.+. .++.|++||.++++++..++..... ++.+.++.|++++..++.|+.
T Consensus 97 l~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 97 LHTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 998764 666777788999999999975 6667778998889998887765433 366899999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEc--------CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271 701 ENYISILDVETQVCRLKLQ--------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 771 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~--------~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s 771 (835)
||.|++||+.++..++... ....-|.+|.|-.++. |++|. .|+|.+||...+ ..+..+..|...|.+
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLA 250 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcceeE
Confidence 9999999999987776221 1233577788876665 45555 999999999888 788889999999999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcCCCcE--E---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 772 CVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 772 v~fspdg~~L~sgs~dg~I~IwDl~~~~~--~---~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
++..+++.++++++.|+.|.-|...+++. + ....|...|.+++..++ .|++|+.|..+.|
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 99999999999999999999888877643 2 44578899999999876 8999999998865
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.3e-20 Score=207.86 Aligned_cols=280 Identities=15% Similarity=0.218 Sum_probs=207.7
Q ss_pred cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (835)
Q Consensus 503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (835)
...+.+++.+..|+.|.+|....-.. + ..-..++....|.+.|..+.|.|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~f------r-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVF------R-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhc------c-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 55678999999999999993322210 0 1111245566899999999999966789999999999999
Q ss_pred EcCCCeEEEE--eccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCc--------------------------ee
Q 003271 583 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL 633 (835)
Q Consensus 583 d~~t~~~i~~--l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~--------------------------~~ 633 (835)
|+++.+++.. +.+|.+.|.+++|.+. ...|++|+.||.|.|||+..... .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999988866 8899999999999995 56899999999999999863320 01
Q ss_pred EEeecCCCCeEE---EEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEe--------------ecCceEEEEecCCCEE
Q 003271 634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVF--------------KSGATQMRFQPRLGRI 695 (835)
Q Consensus 634 ~~~~~h~~~V~s---l~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~~--------------~~~i~~l~fsp~~~~l 695 (835)
+....+...|.+ +.+..|.. .|++++. |+.|+|||+++..+.... ..++.++..+..|.++
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 122234444444 44445544 4556655 999999999876544321 1346778888889999
Q ss_pred EEEEcCCcEEEEECCCC--eEEEEEcCCCCCe--EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 696 LAAAIENYISILDVETQ--VCRLKLQGHKNQV--HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I--~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
++.+.|+.|++|++.+. .++..+.++...- ..-+.+|++.+|++|+ |...++|.+.+.. .....+.+|.-.|+
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVT 364 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEE
Confidence 99999999999999864 3444454433221 1234689999999999 9999999998864 45556778999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEEcCCC
Q 003271 771 SCVFHPTF-PSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 771 sv~fspdg-~~L~sgs~dg~I~IwDl~~~ 798 (835)
+++|.|.. .-+++++.|..++||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998754 23777788999999999654
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=1.4e-19 Score=201.43 Aligned_cols=312 Identities=18% Similarity=0.270 Sum_probs=237.2
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC---EEEEEeCCCeEEEE
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLW 582 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~---~Lasgs~Dg~I~VW 582 (835)
.-++++|+.+..+.++-.. ...|..+..+.||.+-|.+++|..-+. +||+++.|..|+||
T Consensus 159 ~~lla~Ggs~~~v~~~s~~-----------------~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW 221 (764)
T KOG1063|consen 159 TFLLACGGSKFVVDLYSSS-----------------ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIW 221 (764)
T ss_pred cEEEEecCcceEEEEeccC-----------------CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEE
Confidence 3477888888888887221 125778889999999999999987544 79999999999999
Q ss_pred EcCCCe---------------------EE----------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271 583 CTESFT---------------------VK----------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (835)
Q Consensus 583 d~~t~~---------------------~i----------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~ 631 (835)
.+.-+. .. ..+.+|.+.|+++.|+|.+..|++++.|.++.||..++...
T Consensus 222 ~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG 301 (764)
T KOG1063|consen 222 RIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG 301 (764)
T ss_pred EEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccc
Confidence 753211 11 11248999999999999999999999999999998876532
Q ss_pred e------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-ee--eEee---cCceEEEEecCCCEEEEEE
Q 003271 632 S------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA--GVFK---SGATQMRFQPRLGRILAAA 699 (835)
Q Consensus 632 ~------~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~--~~~~---~~i~~l~fsp~~~~ll~~s 699 (835)
. +-...+........-|+|+++ ++++-+..|..++|...... .. ..+. .++..+.|+|.|.++++++
T Consensus 302 iWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs 380 (764)
T KOG1063|consen 302 IWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS 380 (764)
T ss_pred eEEEEEEeecccccccceeeEEEcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec
Confidence 1 122233445678889999976 56677789999999943321 11 1222 4589999999999999999
Q ss_pred cCCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC----------------------
Q 003271 700 IENYISILDVET----QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS---------------------- 752 (835)
Q Consensus 700 ~dg~I~IwDl~t----~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t---------------------- 752 (835)
.|-+-++|-.-. ...+..-.-|...++|++|-+....+++|. +..+|+|+...
T Consensus 381 ~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 381 LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD 460 (764)
T ss_pred cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence 999999986541 223333345889999999988655666666 67889997531
Q ss_pred ---------------------CCC------------------------------cceEEEeecCCCceEEEEEeCCCCEE
Q 003271 753 ---------------------GSK------------------------------GECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 753 ---------------------~~~------------------------------~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
+.. ...++.+.+|+..|++++.+|+++.+
T Consensus 461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnli 540 (764)
T KOG1063|consen 461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLI 540 (764)
T ss_pred ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEE
Confidence 000 00011345788999999999999999
Q ss_pred EEEEcCC-----eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 782 LVIGCYE-----TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 782 ~sgs~dg-----~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++++... .|++|+..+.... .+.+|.-.|+.|+||||+++|+++|.|.++.+|+
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 9988754 7999999888776 6999999999999999999999999999999995
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.4e-20 Score=189.42 Aligned_cols=283 Identities=19% Similarity=0.341 Sum_probs=218.3
Q ss_pred EEecCCCCCEEEEEEeC----C-CCEEEEEeCCCeEEEEEcCCCe---EEEEe--ccCCCCeEEEEECCC----CCEEEE
Q 003271 549 QLIPASTSKVESCHFSP----D-GKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT 614 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSp----d-g~~Lasgs~Dg~I~VWd~~t~~---~i~~l--~~h~~~V~sv~fspd----g~~Lat 614 (835)
+....|+.+|..++|++ + -..+|+++ ...|.+|.....- .+..+ ..|......++|+-+ ..+||+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34567899999999985 2 23466655 4678899875432 23333 247778888999764 347899
Q ss_pred EECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee------cCceEEEE
Q 003271 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------SGATQMRF 688 (835)
Q Consensus 615 gs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------~~i~~l~f 688 (835)
|+.-|.|+|.|+.++.. ...+.+|...|..|.|+|+...++++++.|..|++|++.+..|+..+. ..+.++.|
T Consensus 111 ~G~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999998764 788999999999999999999999999999999999999999998885 34899999
Q ss_pred ecCCCEEEEEEcCCcEEEEECCCCeEEE----------------------------EEcCCCCCeEEEEEcCCCCEEEEE
Q 003271 689 QPRLGRILAAAIENYISILDVETQVCRL----------------------------KLQGHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 689 sp~~~~ll~~s~dg~I~IwDl~t~~~i~----------------------------~l~~h~~~I~sl~fspdg~~Lasg 740 (835)
++++.+|++++.|..|.+|++...+... +-.-|...|.|+.|. |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998321100 111255666666665 5788887
Q ss_pred e-CCeEEEEEcCC-C----------CCcceEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEEcCCCcEE---Ee
Q 003271 741 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 803 (835)
Q Consensus 741 s-Dg~I~IwDl~t-~----------~~~~~i~~l~~~~~~V~sv--~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l 803 (835)
+ ++.|..|.... . .....+.++......|+.+ +|.|-.+.|+.|...|.|++||++..+.. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 99999998721 1 1122344455555556555 55677899999999999999999887653 22
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 804 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 804 --~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
......|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 23356799999999999999999999999997
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-18 Score=192.91 Aligned_cols=276 Identities=14% Similarity=0.183 Sum_probs=221.3
Q ss_pred CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecC-CCCCEEEEEEeCCCCEEEEEeCCC
Q 003271 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDK 577 (835)
Q Consensus 499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~g-H~~~V~sl~fSpdg~~Lasgs~Dg 577 (835)
+.++...++.+|.+..|++|++|..... +-...++.+ ....|.+++|++ +..|++.+.+|
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg 90 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSG 90 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCc
Confidence 3344455577999999999999944332 122333444 457899999995 45778888899
Q ss_pred eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEE
Q 003271 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLL 656 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll 656 (835)
.|.-||+.+++.+..+....+.|++++.+|.+..++.|++||.+..+++..+.... +.+...++.|.+++|+|++. -+
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i 169 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KI 169 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EE
Confidence 99999999999999999999999999999999999999999988888887765433 34455668999999999976 45
Q ss_pred EEEeCCCcEEEEECCCCeeeeEee-------cC----ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCe
Q 003271 657 CSCDNNSEIRYWSINNGSCAGVFK-------SG----ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 725 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s~~~~~~~~-------~~----i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I 725 (835)
++|+.||.|++||..++..+..+. .. +.++.|- ..+.|++|...|.|.+||...+..+..+..|...|
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adV 248 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADV 248 (691)
T ss_pred EecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcce
Confidence 699999999999999988776332 11 4445555 45789999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
.|++..+++.++++++ |+.|.-|...+... .........|...|.+++..++ .|++|+.|..+.+-....
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999999888888 99988888877643 2233345678889999999888 799999999888876554
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=2.1e-19 Score=192.10 Aligned_cols=292 Identities=18% Similarity=0.264 Sum_probs=213.3
Q ss_pred CceeEEEEEecCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCC----CeEEEEeccCCCCeEEEEECCC-CCEEEE
Q 003271 542 GFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLAT 614 (835)
Q Consensus 542 g~~~~~i~~l~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t----~~~i~~l~~h~~~V~sv~fspd-g~~Lat 614 (835)
...+.+...++-|.+.|+|++|+|.. +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+|. ...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 44556677788899999999999954 4789999999999999952 2345667789999999999994 568999
Q ss_pred EECCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEeecCceEEEEe
Q 003271 615 SSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKSGATQMRFQ 689 (835)
Q Consensus 615 gs~Dg~I~IWDl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----~~~~~~~i~~l~fs 689 (835)
.|+||+|++-|++..... +.........+.++.|+.+...++ .++.=|...+||++++.. +...+-.|..++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999875421 122222445567788887766555 565566999999987654 23334569999999
Q ss_pred cCCC-EEEEEEcCCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-CCcceEEEe
Q 003271 690 PRLG-RILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHEL 762 (835)
Q Consensus 690 p~~~-~ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~-~~~~~i~~l 762 (835)
|-.. ++++++.|++++|||++.-. ++.....|...|.+++|||.+-.|++.+ |+.|+|||..-- .......++
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 9875 46678889999999998532 2344556999999999999876677776 999999998411 011122222
Q ss_pred e---cCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC-CCeeE-EEEeCCCC-EEEEEECCCcEEE
Q 003271 763 S---CTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNG-MVASASHDKCVKI 833 (835)
Q Consensus 763 ~---~~~~--~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~~V~~-la~spdg~-~LaSgs~DG~V~I 833 (835)
. .+.. ......|.|+..+|+++-.-..|-|||-+.++.+ .+.... ..|.+ ..|+|-+. +++.++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 1 1111 2345689999999999999999999999888855 433332 24544 47999887 4455556788988
Q ss_pred e
Q 003271 834 W 834 (835)
Q Consensus 834 W 834 (835)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-20 Score=212.02 Aligned_cols=232 Identities=18% Similarity=0.366 Sum_probs=190.8
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWC 583 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd 583 (835)
.+++|++.+..+.|.+|..... ..-..+..+..|+..|.+++|++.. .+|++|+.||+|++||
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 3578999999999999943221 1112355678999999999999854 5799999999999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 584 TESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 584 ~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
+...+-..++.+..+.|.+|+|+|. +.+|+++.+.|.+.+||++....+...+..|.++|.|+.|+|+ ..+|++|+.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence 9999888888889999999999994 7889999999999999999988888999999999999999996 5589999999
Q ss_pred CcEEEEECCCCeee--eEee--cCceEEEEecCCCEEEEEE---cCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcC-C
Q 003271 663 SEIRYWSINNGSCA--GVFK--SGATQMRFQPRLGRILAAA---IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-S 733 (835)
Q Consensus 663 g~I~iwDl~s~~~~--~~~~--~~i~~l~fsp~~~~ll~~s---~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fsp-d 733 (835)
+.|+|||+.+.+.. .++. .++.++.|-|...+.++.+ .|-.|+|||++.. -+...+..|...++.++|.. |
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence 99999999865432 3333 5689999999987765544 3678999999876 55667888999999999965 4
Q ss_pred CCEEEEEe-CCeEEEEEcCCC
Q 003271 734 GEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 734 g~~Lasgs-Dg~I~IwDl~t~ 753 (835)
-..+.+++ |++|..-.+++.
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 55677777 888776666554
No 144
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=3.5e-19 Score=188.05 Aligned_cols=295 Identities=19% Similarity=0.276 Sum_probs=211.0
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 585 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-- 585 (835)
++++|+.|..|++|....+..+. .+....-...+..|...|++|.|+|+|.+||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 89999999999999444443221 124566677889999999999999999999999999999999654
Q ss_pred ------C--------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC
Q 003271 586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (835)
Q Consensus 586 ------t--------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~ 651 (835)
+ +...+.+.+|...|..++|+|++.++++++-|..+++||+..+.. ...+.+|...|..++|.|-
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence 2 445677889999999999999999999999999999999998874 7888999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003271 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 730 (835)
Q Consensus 652 g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f 730 (835)
+. ++++-+.|...+.+++.....+..+... ....++.... ....++|.-++. ..-...++|
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e--------~~s~rLfhDeTl---------ksFFrRlsf 238 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE--------GKSTRLFHDETL---------KSFFRRLSF 238 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC--------cceeeeeecCch---------hhhhhhccc
Confidence 66 5557777887777777655444333210 0001111110 112222222221 123456788
Q ss_pred cCCCCEEEEEe-----CC-----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC-----------------CCEEEE
Q 003271 731 NTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----------------FPSLLV 783 (835)
Q Consensus 731 spdg~~Lasgs-----Dg-----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd-----------------g~~L~s 783 (835)
+|+|.+|++.+ ++ ..++|+-... ...+..+.+....+..+.|+|- .+.+++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 89998888653 23 3355554322 2344455555555555555441 234566
Q ss_pred EEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 784 IGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 784 gs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
....+.|+|||..+-+.+ .-.-|-..|++++|++||..|+..+.||.+-+
T Consensus 317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 666779999999998776 34468899999999999999999999997543
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2.7e-17 Score=181.31 Aligned_cols=312 Identities=27% Similarity=0.437 Sum_probs=237.2
Q ss_pred cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEE-eCCCC-EEEEEeC-C
Q 003271 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-D 576 (835)
Q Consensus 501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~f-Spdg~-~Lasgs~-D 576 (835)
.+......+..++.|+.+.+|...... ..+..+.++. ..+..+.+ ++++. +++..+. |
T Consensus 72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 133 (466)
T COG2319 72 AFSPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence 344555777888889999999443331 2334444433 36777777 78887 5555444 9
Q ss_pred CeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271 577 KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 577 g~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ 654 (835)
+.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcce
Confidence 9999999998 8888899999999999999999998888885 9999999999744 47778889999999999998875
Q ss_pred EEEEEeCCCcEEEEECCCCeeee-EeecCceE-E-EEecCCCEEEEEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEE
Q 003271 655 LLCSCDNNSEIRYWSINNGSCAG-VFKSGATQ-M-RFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 730 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~~~~-~~~~~i~~-l-~fsp~~~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~f 730 (835)
++++++.|+.|++||...+.... .+..+... + .|++++..+++++.|+.+++||+..... +..+.+|...|.++.|
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 292 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence 66666899999999998777776 45544332 2 7999988888899999999999997654 4444678899999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--cCCCceEEEEEeCCCCEEEEE-EcCCeEEEEEcCCCcEEEeccC
Q 003271 731 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVI-GCYETLELWNMTENKTLTLSAH 806 (835)
Q Consensus 731 spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~~~~~V~sv~fspdg~~L~sg-s~dg~I~IwDl~~~~~~~l~~h 806 (835)
.|++..+++++ |+.+.+||+.+. ....... .|...+..+.|.+++..++.+ ..|+.+.+|++...........
T Consensus 293 ~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 369 (466)
T COG2319 293 SPDGKLLASGSSDGTVRLWDLETG---KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369 (466)
T ss_pred CCCCCEEEEeeCCCcEEEEEcCCC---ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC
Confidence 99888888877 888999988876 3333333 666678899884332556666 5778899999988873333233
Q ss_pred CCCeeEEEEeCCCCEEEE-EECCCcEEEeC
Q 003271 807 DKLVSSLAASTVNGMVAS-ASHDKCVKIWK 835 (835)
Q Consensus 807 ~~~V~~la~spdg~~LaS-gs~DG~V~IWd 835 (835)
...+..+.+.+ ...++. +..++.+.+|+
T Consensus 370 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 370 HSNVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred CceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 33388899988 544444 68899999996
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2e-19 Score=198.08 Aligned_cols=269 Identities=18% Similarity=0.276 Sum_probs=212.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
.|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|+||+|+.||+.+++|+.|..|.||+-.-.. +. .
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~L-k 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--IL-K 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--ee-e
Confidence 699999999999887775 4689999999999999999999999999999999999999999999999876433 22 2
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 715 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i 715 (835)
..|.+.|.|+.|+|-.. .+++|+ =...-+|........ ......+.+.+|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 35899999999999855 666776 345678887654332 223355788899999999999999999999865433332
Q ss_pred EE--EcCCCCCeEEEEEcCCC-----CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 716 LK--LQGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 716 ~~--l~~h~~~I~sl~fspdg-----~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
.. -.+..++|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-..-+-...++.+.++|.++++|+.|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 22 22477899999999863 4566666 66777777654 2333333344566789999999999999999
Q ss_pred CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 788 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 788 g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.+.+|.-+.-.+-++......|+.++..|++.+++.|+.||+|-.|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999755444446667788999999999999999999999997664
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.8e-19 Score=183.08 Aligned_cols=268 Identities=16% Similarity=0.256 Sum_probs=203.2
Q ss_pred CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (835)
Q Consensus 504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (835)
.-..+++.|+.|+.|.+|+ -.++..-+.+.+|..+|+|++||+||+.|+|++.|..|.+||
T Consensus 33 ~~G~~lAvGc~nG~vvI~D-------------------~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYD-------------------FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred cCcceeeeeccCCcEEEEE-------------------ccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 3447999999999999992 233445567889999999999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeec---CCCCeEEEEEcCCCCcEEEEE
Q 003271 584 TESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 584 ~~t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~---h~~~V~sl~fsp~g~~ll~sg 659 (835)
+..+.+++.+. ...+|+.+.|+|... .+++.-.+..-.+-++..+...+..... .+....+..|++.|+ ++++|
T Consensus 94 l~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitG 171 (405)
T KOG1273|consen 94 LLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITG 171 (405)
T ss_pred ccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEe
Confidence 99999998885 678999999999533 3333334444555666543321111110 111223345788877 56689
Q ss_pred eCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCC-------eE--EEEEcC--CCCC
Q 003271 660 DNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--HKNQ 724 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-------~~--i~~l~~--h~~~ 724 (835)
...|.+.++|..+.+++..++ ..+..+.++..+..|++-+.|..|+.|+++.- ++ .+++.. ....
T Consensus 172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999999999999999998776 34788899999999999999999999998731 11 111111 1234
Q ss_pred eEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 725 VHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 725 I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
-.+++|+.+|.|+++++ -..++||.-..| ..++.+.+.. .....+.|+|-.+.|++. ..|.|+||...
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 56899999999999998 569999999888 6777777766 667889999999877777 77899999864
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-19 Score=192.07 Aligned_cols=254 Identities=19% Similarity=0.244 Sum_probs=199.8
Q ss_pred EEEEEEeCCCCE-EEEEeCCCeEEEEEcCCC--eE--EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESF--TV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (835)
Q Consensus 558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~--~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 632 (835)
|.+++|+....+ +++.+.|..|++|.-... +. +....+ +.-.||+......++++|+..++|+|||+.. +.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~ 113 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLI 113 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHH-HHH
Confidence 899999986642 344567889999964322 22 222222 2445555555568999999999999999994 556
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCEEE-EEEcCCcEEEE
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRIL-AAAIENYISIL 707 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll-~~s~dg~I~Iw 707 (835)
.+.+.+|.+.|+++.|+.... +|++++..|.|.|..+.++.....|..+ +.-+.|++..+.++ +++.+|.|.+|
T Consensus 114 hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred hhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 889999999999999998754 7789999999999999998877777644 55788999877655 56677999999
Q ss_pred ECCCCeEEEEE-cCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271 708 DVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 708 Dl~t~~~i~~l-~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg 784 (835)
|+....++..+ ..|..+...|||+|... +|++.+ |..|.+||++......++. ...+...++|.++|.+|++|
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEee
Confidence 99988777655 45999999999999765 555556 9999999999763333332 35688999999999999999
Q ss_pred EcCCeEEEEEcCCCcE-E-EeccCCCCeeEEEEeCCC
Q 003271 785 GCYETLELWNMTENKT-L-TLSAHDKLVSSLAASTVN 819 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~-~-~l~~h~~~V~~la~spdg 819 (835)
...|.|..||++..+. + .+.+|...|++++|-+.-
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999987663 3 777999999999998764
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2e-20 Score=218.84 Aligned_cols=241 Identities=19% Similarity=0.347 Sum_probs=200.6
Q ss_pred CCEEEEEEeCCCCE----EEEEeCCCeEEEEEcCCC------eEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEE
Q 003271 556 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 624 (835)
Q Consensus 556 ~~V~sl~fSpdg~~----Lasgs~Dg~I~VWd~~t~------~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IW 624 (835)
.+.+.++|.+.|.. ||.|..||.|.+||.... ..+.++..|++.|..+.|++... +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45778999887665 888999999999998652 34466778999999999999754 99999999999999
Q ss_pred ecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----CceEEEEecCCC-EEEE
Q 003271 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----GATQMRFQPRLG-RILA 697 (835)
Q Consensus 625 Dl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~i~~l~fsp~~~-~ll~ 697 (835)
|+.+.+..... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+.. .+..+.|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99986643332 2224578999999998889999999999999999998877766543 366899999974 4566
Q ss_pred EEcC---CcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271 698 AAIE---NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 771 (835)
Q Consensus 698 ~s~d---g~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s 771 (835)
++.| -.|.+||++.- .++..+.+|...|.++.|++.+ ++|++++ |+.|.+|+.+++ +.+.++....+.+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 6655 36999999854 6677788999999999999976 7888887 999999999998 889999888999999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEEcCCCc
Q 003271 772 CVFHPTFP-SLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 772 v~fspdg~-~L~sgs~dg~I~IwDl~~~~ 799 (835)
+.|+|..+ .+++++.||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999987 67788889999999987655
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=4.6e-19 Score=182.08 Aligned_cols=266 Identities=18% Similarity=0.297 Sum_probs=206.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCC------------eEEEEec-cCCCCeEEEEEC-------CCCCEEEEEEC
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 617 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~------------~~i~~l~-~h~~~V~sv~fs-------pdg~~Latgs~ 617 (835)
...+.|+|||..|++-+.|..+.+|++..- +...+++ .....|.+.+|. |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 557899999999999999999999987421 1111111 234568888886 56789999999
Q ss_pred CCeEEEEecCCCCceeEEee--cCCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeeeEe----------ec
Q 003271 618 DRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVF----------KS 681 (835)
Q Consensus 618 Dg~I~IWDl~t~~~~~~~~~--~h~~---~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl-~s~~~~~~~----------~~ 681 (835)
|.-|++||.-+++. ...+. .|-. ...+++|+|||..++ ++...+|++||+ +.|...... .+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998875 22222 2333 356899999998766 455889999999 555422111 23
Q ss_pred CceEEEEecCCC-EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcce
Q 003271 682 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 758 (835)
Q Consensus 682 ~i~~l~fsp~~~-~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~ 758 (835)
-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+ |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 378899999765 788888999999999999999999999999999999999999999999 8899999999753 44
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEEcCC-Cc-EEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271 759 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NK-TLTLSAHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 759 i~~l~~~~~---~V~sv~fspdg~~L~sgs~dg~I~IwDl~~-~~-~~~l~~h~~~V~~la~spdg~~LaSgs~D 828 (835)
+..+..|.. .-.-+...|++.+|++|+.+|.|++||+++ +. +..+..|...|+.++++|--.++++++..
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 455554443 233445578999999999999999999988 55 44777899999999999998888887643
No 151
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.6e-19 Score=190.85 Aligned_cols=233 Identities=19% Similarity=0.357 Sum_probs=184.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCe---EEEE------------------eccCCCCeEEEEECCC-CCEEEEEECCCeEEEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 624 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~---~i~~------------------l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IW 624 (835)
|+|+|.|+.|..|.|||+.-.. +... -.+|++.|.++.|+.. ...||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6799999999999999975211 1111 2369999999999876 5689999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEeecCceEEEEecCCC-EEEEEEc
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKSGATQMRFQPRLG-RILAAAI 700 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~~~~~~~i~~l~fsp~~~-~ll~~s~ 700 (835)
|+.+++. ..++..|...|.++.|+|....++++|+.|++|.+.|.+.. .....+.+.+..++|.+... .+++++.
T Consensus 272 D~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 9999874 78888899999999999999999999999999999999943 33455678899999999875 4666677
Q ss_pred CCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 701 ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 701 dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
||.|+-+|++.. +++.++..|..+|.+|+++..- .++++++ |+.|++|++..... ..+......-+...|.++.|+
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCC
Confidence 899999999975 9999999999999999998865 4556666 99999999976432 223322222344677788888
Q ss_pred CCEE-EEEEcCCeEEEEEcCCCcEE
Q 003271 778 FPSL-LVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 778 g~~L-~sgs~dg~I~IwDl~~~~~~ 801 (835)
-.++ ++|+..+.++|||+.+...+
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEecCccceEEEeecccChhH
Confidence 7654 45555667999999876644
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=6.2e-17 Score=178.45 Aligned_cols=283 Identities=29% Similarity=0.464 Sum_probs=226.7
Q ss_pred eEEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEE
Q 003271 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 622 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~ 622 (835)
......+..|...|.+++|++++.++++++. |+.+++|++.+++.+..+.+|...|.+++|+|++. .+++++.|+.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 3556778899999999999999999888885 99999999999899999999999999999999988 555559999999
Q ss_pred EEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEe---ecCceEEEEecCCCEEEE
Q 003271 623 VWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF---KSGATQMRFQPRLGRILA 697 (835)
Q Consensus 623 IWDl~t~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~---~~~i~~l~fsp~~~~ll~ 697 (835)
+||...+.. +. .+..|...+ ...|++++ .++++++.|+.+++|++..... +..+ ...+.++.|.|++..+++
T Consensus 225 ~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 225 LWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred EEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 998885553 44 678888775 44899998 4666899999999999987654 4333 345888899998888888
Q ss_pred EEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 698 AAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~Lasg-s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
++.|+.+.+||..+........ .|...+..+.|.+++..++.+ . |+.+.+|++.... ....... ...+..+.
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~~ 377 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEG-HSNVLSVS 377 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecC-CceEEEEE
Confidence 8889889999999887766665 788889999994333556655 4 8899999998873 2222222 22288888
Q ss_pred EeCCCCEEEE-EEcCCeEEEEEcCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 774 FHPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 774 fspdg~~L~s-gs~dg~I~IwDl~~~~~~~l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.+ ...++. +..++.+.+|+............. ..+..+.+++++..+++++.++.+++|+
T Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 378 FSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred ECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 888 533443 577889999999998887555444 8899999999999999999999999995
No 153
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4.8e-19 Score=179.77 Aligned_cols=206 Identities=19% Similarity=0.325 Sum_probs=168.1
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCC------ce--------eEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 594 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YS--------LRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 594 ~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~------~~--------~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
..|.+.|.++...+ .|+++++|+.||.|.|||+.+.. .. .....+|.-.|.++.|.|-..-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999987 58999999999999999997543 00 11224577889999999988889999
Q ss_pred EeCCCcEEEEECCCCeeeeEee--cCceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271 659 CDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd 733 (835)
++.|.++++||.++......|+ +.+..-+++|-. -.+++|..+-.|++.|+.++.+.+.+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 9999999999999988877665 447777777753 34666777889999999999999999999999999999998
Q ss_pred CCEEE-EEe-CCeEEEEEcCCCC------------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 734 GEYLA-SVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 734 g~~La-sgs-Dg~I~IwDl~t~~------------~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
.++++ +|+ ||.|++||++... ....+..-..|.+.|..++|..++.++++++.|..+++|+...|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 87765 455 9999999998642 111222234567889999999999999999999999999998775
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=7.6e-19 Score=192.65 Aligned_cols=114 Identities=24% Similarity=0.405 Sum_probs=98.1
Q ss_pred CCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003271 722 KNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN 794 (835)
Q Consensus 722 ~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwD 794 (835)
...|+.+.|+| |...|++++ ||.|++|.+..+.. ...-..+..|...|+++.|+|-. ..|++++.|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45789999998 456677666 99999999987542 23455678899999999999954 6788899999999999
Q ss_pred cCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 795 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 795 l~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.+.+.. .+.+|.+.|.+++|+|||+.+++.|.||+|+||+
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9998876 8999999999999999999999999999999985
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4e-20 Score=216.39 Aligned_cols=272 Identities=21% Similarity=0.309 Sum_probs=214.4
Q ss_pred EEEEeCCCC-EEEEEe----------CCCeEEEEEcCC--C----eEEEEeccCCCCeEEEEECCCCCE----EEEEECC
Q 003271 560 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 618 (835)
Q Consensus 560 sl~fSpdg~-~Lasgs----------~Dg~I~VWd~~t--~----~~i~~l~~h~~~V~sv~fspdg~~----Latgs~D 618 (835)
.++|+|++. ++|+|. .+.++.||.+.. . +.+..+. -....++++|.+.+.. |+.|.+|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999886 566543 245566665432 2 2233332 2346789999987665 8899999
Q ss_pred CeEEEEecCCC-----CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----ecCceEEEE
Q 003271 619 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KSGATQMRF 688 (835)
Q Consensus 619 g~I~IWDl~t~-----~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----~~~i~~l~f 688 (835)
|.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||+++.+.-... ...|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997652 12456778899999999999999999999999999999999885544333 356999999
Q ss_pred ecCCCEEEE-EEcCCcEEEEECCCCeEEEEEcCCCC--CeEEEEEcCCCC-EEEEEe--CC--eEEEEEcCCCCCcceEE
Q 003271 689 QPRLGRILA-AAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 760 (835)
Q Consensus 689 sp~~~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~--~I~sl~fspdg~-~Lasgs--Dg--~I~IwDl~t~~~~~~i~ 760 (835)
+..-.++++ ++.+|.+.|||++..+.+..+..+.. .+..+.|+|++. .|++++ |+ .|.+||+|... ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 987766555 55668999999999988888876655 467899999873 444444 33 89999998764 5667
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003271 761 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 834 (835)
Q Consensus 761 ~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~-~LaSgs~DG~V~IW 834 (835)
++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++++ .+....+.+..+.|+|... .|++++.||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 778999999999999977 88999999999999999999998 6767788999999999776 88889999999987
No 156
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=178.37 Aligned_cols=241 Identities=17% Similarity=0.262 Sum_probs=183.1
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 591 ~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~----~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
..+++|.+.|++++|+.||++|+|++.|++|+||+++.-.. +++.-. .-+..+.+.|.||-+.+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999986331 112111 1235678999999999999998888999
Q ss_pred EEECCCCe---eee------------EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271 667 YWSINNGS---CAG------------VFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 731 (835)
Q Consensus 667 iwDl~s~~---~~~------------~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs 731 (835)
+|.+...+ ... .....+..+-....+.+|++++.|..|.+||++ ++.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99875432 111 111224445566667889999999999999999 88888777666677788999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCC-----CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-------
Q 003271 732 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------- 798 (835)
Q Consensus 732 pdg~~Lasgs-Dg~I~IwDl~t~~-----~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~------- 798 (835)
|+|++|++++ .-.|+||.+--.+ ....+..+.+|...|..++|+++...+++.+.||+++|||++-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999999 8889999975332 23466788999999999999999999999999999999997521
Q ss_pred cEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 799 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 799 ~~~-----~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
+.+ .+.+..+....++++|.|..|+.+. ...+++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 122 1222334455899999999887654 3345554
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=7.6e-19 Score=183.76 Aligned_cols=241 Identities=18% Similarity=0.375 Sum_probs=183.9
Q ss_pred cCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcC----------------CCeEEEEeccCCCCeEEEEECCC-CCEE
Q 003271 552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL 612 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~----------------t~~~i~~l~~h~~~V~sv~fspd-g~~L 612 (835)
.+|.+.|.-+.-++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=+.++|+|- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4677778777777644 466667788999999863 24567888999999999999993 3358
Q ss_pred EEEECCCeEEEEecCCCCcee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eee--eEeecCceE
Q 003271 613 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCA--GVFKSGATQ 685 (835)
Q Consensus 613 atgs~Dg~I~IWDl~t~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~--~~~~~~i~~ 685 (835)
++|..-+.|++|...++...+ ..+.+|+..|..|+|+|..+.+|++|+.||+|+|||++.+ .++ +.+.+.+..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888899999998876543 5577899999999999999999999999999999999987 232 334466999
Q ss_pred EEEecCCCEEEEEEcCCcEEEEECCC---CeEEEEEcCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcce--
Q 003271 686 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGEC-- 758 (835)
Q Consensus 686 l~fsp~~~~ll~~s~dg~I~IwDl~t---~~~i~~l~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~-- 758 (835)
+.|+.....|++|+.||.++|||++. +.++..|+-|..+|++|.|+|... .|++++ |..|.|||+......+.
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999999899999999999999985 578889999999999999998543 344444 99999999975432110
Q ss_pred -------------EEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 003271 759 -------------IHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW 793 (835)
Q Consensus 759 -------------i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~Iw 793 (835)
+..+.-....+..+.|++.-+ +|++.+.|| +.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 111111234567788888765 445555555 4444
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=8.3e-19 Score=187.53 Aligned_cols=254 Identities=17% Similarity=0.250 Sum_probs=199.6
Q ss_pred EEcCCCeEEEEeccCCCCeEEEEECCCC--CEEEEEECCCeEEEEecCC---CCceeEEeecCCCCeEEEEEcCCCCcEE
Q 003271 582 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (835)
Q Consensus 582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t---~~~~~~~~~~h~~~V~sl~fsp~g~~ll 656 (835)
+|+.+......++-+.+.|++++|+|.. +++++|+.-|.|-+||+.+ ...-+..+..|..+|.+|.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4444555556677789999999999964 5888999999999999952 2223567888999999999999988888
Q ss_pred EEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEE
Q 003271 657 CSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 730 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~f 730 (835)
++.+.||+|++-|++.......+. .....+.|+.+...++++..-|.+.+||++++.. ...+.-|...|.+|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 999999999999998764332222 3366677888888888888888999999998654 5566678899999999
Q ss_pred cCCC-CEEEEEe-CCeEEEEEcCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC----CCcEEEe
Q 003271 731 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 803 (835)
Q Consensus 731 spdg-~~Lasgs-Dg~I~IwDl~t~~~~~-~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~----~~~~~~l 803 (835)
+|-. .+|++++ |++++|||++.-.... .+.....|...|.++.|+|.+-.|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9966 5677777 9999999999754433 345556689999999999999889999999999999984 2233333
Q ss_pred ccCCC------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 804 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 804 ~~h~~------~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..|.. ......|.|+..+|++|-.-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 34432 244568999999999999888888775
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.4e-18 Score=181.70 Aligned_cols=283 Identities=16% Similarity=0.231 Sum_probs=211.6
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC------CeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCe
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 620 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~ 620 (835)
.+.+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|....++|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 345679999999999999999999999999999999853 34554443 35589999999999999999999999
Q ss_pred EEEEecCCCCceeEEee--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------eeeEeecCceEEEEecCC
Q 003271 621 VRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVFKSGATQMRFQPRL 692 (835)
Q Consensus 621 I~IWDl~t~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~------~~~~~~~~i~~l~fsp~~ 692 (835)
|.+.|+++... +..+. ...+.|+.+..+|. .+++++.+.++.|.+||++... |..........+.|+|..
T Consensus 129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999998653 33332 12348999999999 4577888999999999998654 122223446778899987
Q ss_pred CE-EEEEEcCCcEEEEECCCCe-EEEEEc---C---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee
Q 003271 693 GR-ILAAAIENYISILDVETQV-CRLKLQ---G---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 763 (835)
Q Consensus 693 ~~-ll~~s~dg~I~IwDl~t~~-~i~~l~---~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~ 763 (835)
.. |++.+..+.+.+||++... .+.... + ....-.++.|+|+|..|.+.- ...-.+||+.+.. ..+..+.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D 284 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSD 284 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEecc
Confidence 55 4556667899999998653 222211 1 122346788999999888777 4456678887642 2222332
Q ss_pred cC------CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC------------------------CcEEEeccCCCCeeEE
Q 003271 764 CT------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSL 813 (835)
Q Consensus 764 ~~------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~------------------------~~~~~l~~h~~~V~~l 813 (835)
.. ...+.+|+|..+.. +++|+.+=.|++|.+.. +....+.+|.+.++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11 23466778877765 88888888999998732 1233678999999999
Q ss_pred EEeCCCCEEEEEECCCcEEEeC
Q 003271 814 AASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 814 a~spdg~~LaSgs~DG~V~IWd 835 (835)
.|++...+|++.+..+.++||.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 9999999999999999999994
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=9.5e-19 Score=187.84 Aligned_cols=218 Identities=17% Similarity=0.264 Sum_probs=184.1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
.-+|++......|+++|+..++|+|||+....+.+.+++|...|++|.++....|||+++..|.|.|..+.++.. ...|
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f 159 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTF 159 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccce
Confidence 345555555568999999999999999998778888999999999999999999999999999999999998764 3334
Q ss_pred ecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEEEEecCCCE-EEEEEcCCcEEEEECC
Q 003271 637 TGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQMRFQPRLGR-ILAAAIENYISILDVE 710 (835)
Q Consensus 637 ~~h-~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l~fsp~~~~-ll~~s~dg~I~IwDl~ 710 (835)
... ...|.-+.|++..+.+|.+++++|.|.+||+.....+.. +..+...|+|+|.... |++.+.|..|++||++
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 333 456779999999999999999999999999987766544 3466888999998754 5567899999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778 (835)
Q Consensus 711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg 778 (835)
.......+. -..+...++|.++|.+|++|. .|.|+.||++..+ .++..+..|...|++++|-+.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 877666665 467899999999999999999 9999999999864 5777888899999999998764
No 161
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.7e-18 Score=184.81 Aligned_cols=250 Identities=18% Similarity=0.263 Sum_probs=185.5
Q ss_pred cCCCcEEEeccCCCCEEEeec--CCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeE
Q 003271 503 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA 579 (835)
Q Consensus 503 ~~~~~~l~tGs~D~~i~~~ls--~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I 579 (835)
.+..+++|.|..|..|++|.. .+...+...+++.....+...-..-..-.+|++.|.+++|+..- ..||+|+.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 445679999999999999932 22233333333222211111111222345899999999998754 479999999999
Q ss_pred EEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 580 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.....-..+ ...+.|..++|.|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999995 7799999999999999999644322222 245789999999999989999
Q ss_pred EeCCCcEEEEECCCC-eeeeEee---cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE--EEEEcCCCCCeEEEEEc
Q 003271 659 CDNNSEIRYWSINNG-SCAGVFK---SGATQMRFQPRL-GRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWN 731 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~-~~~~~~~---~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~fs 731 (835)
+..||+|+-+|++.. +++..++ .+|.+++++... +.+++++.|+.|++|++..... +..-.-.-+...|.++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999875 7776665 569999988865 5677788899999999875433 22111112346677778
Q ss_pred CCCCEE-EEEe-CCeEEEEEcCCC
Q 003271 732 TSGEYL-ASVS-DELVRVWSIGSG 753 (835)
Q Consensus 732 pdg~~L-asgs-Dg~I~IwDl~t~ 753 (835)
|+-.++ +.|+ .+.++|||+.+.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 876544 4444 668999999876
No 162
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.5e-17 Score=168.60 Aligned_cols=268 Identities=20% Similarity=0.274 Sum_probs=187.2
Q ss_pred CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCC
Q 003271 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD 576 (835)
Q Consensus 499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~D 576 (835)
.+.++...+.+++++.|..+++|.+.++ ..++......+.|.+.|..|.|.+ -|..+|+++.|
T Consensus 18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 18 DVSFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred eeeecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence 3445677799999999999999965333 345666777889999999999976 58899999999
Q ss_pred CeEEEEEcC---------CCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCceeE-----------
Q 003271 577 KKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR----------- 634 (835)
Q Consensus 577 g~I~VWd~~---------t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~~~~----------- 634 (835)
++|.||.-. ......++......|++|.|.|. |-.|++++.||+||||+..+......
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 999999641 23345677778889999999995 77899999999999999765432111
Q ss_pred -EeecCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271 635 -TFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVET 711 (835)
Q Consensus 635 -~~~~h~~~V~sl~fsp~g--~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t 711 (835)
....+..+..|+.|+|.. ..+|+.|+.+. +..-+.++||....
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~----------------------------------a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDED----------------------------------APHLNKVKIYEYNE 208 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccC----------------------------------CccccceEEEEecC
Confidence 111234445555555431 12333333210 00003455554332
Q ss_pred ----CeEEEEEcCCCCCeEEEEEcCC----CCEEEEEe-CCeEEEEEcCCCC-----------------CcceEEEeecC
Q 003271 712 ----QVCRLKLQGHKNQVHSVCWNTS----GEYLASVS-DELVRVWSIGSGS-----------------KGECIHELSCT 765 (835)
Q Consensus 712 ----~~~i~~l~~h~~~I~sl~fspd----g~~Lasgs-Dg~I~IwDl~t~~-----------------~~~~i~~l~~~ 765 (835)
...+.++.+|..+|+.|+|.|+ -..|++++ || |+||.++... ..+.+..+..|
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 2344566789999999999995 35677777 88 9999987411 23456678899
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC---CcEEEeccCCCCeeEEEEe
Q 003271 766 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE---NKTLTLSAHDKLVSSLAAS 816 (835)
Q Consensus 766 ~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~---~~~~~l~~h~~~V~~la~s 816 (835)
.+.|+.+.|+-.|..|.+.+.||.|++|...- .++......++.|....|+
T Consensus 288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~ 341 (361)
T KOG2445|consen 288 NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS 341 (361)
T ss_pred CCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence 99999999999999999999999999997643 3344333344444444444
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.9e-18 Score=187.96 Aligned_cols=241 Identities=19% Similarity=0.268 Sum_probs=196.6
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003271 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (835)
Q Consensus 589 ~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iw 668 (835)
+-..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.+...+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 4456789999999999999999999999999999999999885 55444 346899999999876655555444445554
Q ss_pred ECCCCe---------------------------------------e-eeEeecCceEEEEecCCCEEEEEEcC---CcEE
Q 003271 669 SINNGS---------------------------------------C-AGVFKSGATQMRFQPRLGRILAAAIE---NYIS 705 (835)
Q Consensus 669 Dl~s~~---------------------------------------~-~~~~~~~i~~l~fsp~~~~ll~~s~d---g~I~ 705 (835)
+..-|. + +......+..+.|+..|++|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 432220 0 01112347889999999999998865 4689
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
|+++.......-|....+.|.++.|+|...+|++++-..|+|||+... ..+..+......|.+++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999987766666666678899999999999999999999999999876 66666666778899999999999999999
Q ss_pred cCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 786 CYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 786 ~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.|+.+..||+.-.... ++..|...|++++|++.-.++++|+.||++.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999999766433 788999999999999999999999999999886
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1e-18 Score=175.43 Aligned_cols=283 Identities=19% Similarity=0.212 Sum_probs=200.7
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
++..+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+......++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4677889999999999998875 8899999999999999988888887 67788999998887 5788889999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCC-----CC---cEEEEEeCCC-cEEEEECCCCeeeeEee-------cCceEEEEe
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPS-----KE---DLLCSCDNNS-EIRYWSINNGSCAGVFK-------SGATQMRFQ 689 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~-----g~---~ll~sgs~Dg-~I~iwDl~s~~~~~~~~-------~~i~~l~fs 689 (835)
+..... ...|.-.++++.|++. .+ .+++.-+... .+.+-|......+...+ +.+.+..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986443 2234444555555542 11 1111111000 11112221111111111 223343322
Q ss_pred cC-CC--EEEEEEcCCcEEEEECCCCeEEE----------EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271 690 PR-LG--RILAAAIENYISILDVETQVCRL----------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 755 (835)
Q Consensus 690 p~-~~--~ll~~s~dg~I~IwDl~t~~~i~----------~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~ 755 (835)
.. +. .+++|..+|.|.+||+.++..+. ....|..+|.++.|.+.-..=++++ +..+..|++.....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 22 22 35566678999999999874433 3345889999999986544444555 77888998865421
Q ss_pred -cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 756 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 756 -~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
...-.++......|..+.+-||++.+++++.|+.|+||+.++...+ .+..|.+.|.+++|+|+..++|+++.|++|-+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 1222233344567888999999999999999999999999999988 78899999999999999999999999999999
Q ss_pred eC
Q 003271 834 WK 835 (835)
Q Consensus 834 Wd 835 (835)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 165
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=1e-17 Score=175.38 Aligned_cols=236 Identities=23% Similarity=0.335 Sum_probs=185.4
Q ss_pred ccCCCCeEEEEECCCC--CEEEEEECCCeEEEEecCC---------------CCceeEEeecCCCCeEEEEEcCCCCcEE
Q 003271 594 EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (835)
Q Consensus 594 ~~h~~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t---------------~~~~~~~~~~h~~~V~sl~fsp~g~~ll 656 (835)
..|.+.|.-+...+-+ .+.++=+..|.|.|||+.. ...++.++.+|...=+.|+|+|-..-.+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577778877776643 4556667789999999852 1235678889999999999999655557
Q ss_pred EEEeCCCcEEEEECCCCeee------eEeecCceEEEEecCC-CEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeE
Q 003271 657 CSCDNNSEIRYWSINNGSCA------GVFKSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 726 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s~~~~------~~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~ 726 (835)
++|+--+.|++|...++... ......+..++|+|.. +.|++|+.|+.|+|||++.+ .++. .+.|.+.|.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 78888889999999886533 1233458889999976 56777889999999999987 3443 377999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcE----
Q 003271 727 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 800 (835)
Q Consensus 727 sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~---- 800 (835)
.|.|+....+|++|+ ||+++|||++..+....+..++.|..+|+++.|+|.. ..|++++.|..|.|||+....-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999988999999 9999999999988778999999999999999999965 5677888899999999853221
Q ss_pred -------------EEeccC--CCCeeEEEEeCCC-CEEEEEECCCc
Q 003271 801 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKC 830 (835)
Q Consensus 801 -------------~~l~~h--~~~V~~la~spdg-~~LaSgs~DG~ 830 (835)
..+.-| ...|..+.|++.- .+|++.+.||.
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 022334 4568889999854 48888888884
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=7.1e-16 Score=170.50 Aligned_cols=287 Identities=11% Similarity=0.123 Sum_probs=192.4
Q ss_pred EEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEcC-C
Q 003271 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-S 586 (835)
Q Consensus 509 l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~-t 586 (835)
.++...|+.|.+|..... -.+..+..+. +.+....++++|++++|++++ .++.|.+|+++ +
T Consensus 5 y~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE----------------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD 67 (330)
T ss_pred EEEcCCCCCEEEEEECCC----------------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence 344467888999844211 1223344443 235577899999999987765 57899999986 3
Q ss_pred CeE--EEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCce---eEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 587 ~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~---~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
++. +.... ..+....++|+|++++|++++. ++.|.+|++++.... +..+ .+.....+++++|+++.+++++.
T Consensus 68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeC
Confidence 432 23322 3345678999999999988875 789999999753321 2222 23345678899999998888888
Q ss_pred CCCcEEEEECCCCeeee-------Ee--ecCceEEEEecCCCEEEEEEc-CCcEEEEECCC--C--eEEEEEcCC-----
Q 003271 661 NNSEIRYWSINNGSCAG-------VF--KSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH----- 721 (835)
Q Consensus 661 ~Dg~I~iwDl~s~~~~~-------~~--~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t--~--~~i~~l~~h----- 721 (835)
.++.|.+||+.+...+. .. ..+...+.|+|++++++++.. ++.|.+||+.. + +.+..+..+
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 88999999997633221 11 133578999999999988887 89999999973 2 333333221
Q ss_pred -CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271 722 -KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 796 (835)
Q Consensus 722 -~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~ 796 (835)
......+.++|++++|+++. ++.|.+|++..... .+.+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus 226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 12234688999999999886 78999999965421 123333332 235567899999999998886 7799999874
Q ss_pred --CCcEEE--eccCCCCeeEEEE
Q 003271 797 --ENKTLT--LSAHDKLVSSLAA 815 (835)
Q Consensus 797 --~~~~~~--l~~h~~~V~~la~ 815 (835)
++.... .........+++|
T Consensus 305 ~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 305 GETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCCCcEEEccccccCCCceEEEE
Confidence 444332 1122344555554
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2e-18 Score=188.91 Aligned_cols=257 Identities=19% Similarity=0.293 Sum_probs=198.2
Q ss_pred eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--------CCeEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003271 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--------t~~~i~~l~~h~~~V~sv~fspdg~~Latgs 616 (835)
|..-.++..|.+.|..++|.+....|++++.||+|++|++. ..+.+.+|.+|.++|.|+++.+++.++++|+
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg 363 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG 363 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence 33444788999999999999999999999999999999982 2467789999999999999999999999999
Q ss_pred CCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cC--
Q 003271 617 ADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SG-- 682 (835)
Q Consensus 617 ~Dg~I~IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~-- 682 (835)
.||+|++|++.. .......+.||.+.|+.++++.... .|++|+.||+++.|+...... .+|. ..
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999996542 1233467899999999999999855 567999999999999976655 2332 11
Q ss_pred ceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC-------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271 683 ATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 683 i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~-------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~ 753 (835)
...+.+.... ...++...-+.-.+++.+....+..+.. ....+.-+.++|.+.+.+++. |+.|+++|..++
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence 2333333322 1222222233444445554444443332 123467788999998888888 999999999998
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h 806 (835)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++ ....|
T Consensus 522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 888999999999999999999999999999999999999877765 33344
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=3e-16 Score=173.43 Aligned_cols=264 Identities=9% Similarity=0.180 Sum_probs=183.1
Q ss_pred EEEEeCCCeEEEEEcCC-Ce--EEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCC-CCceeEEeecCCCCeE
Q 003271 570 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM 644 (835)
Q Consensus 570 Lasgs~Dg~I~VWd~~t-~~--~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t-~~~~~~~~~~h~~~V~ 644 (835)
+++...|+.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446789999999964 33 445554 345677899999999987765 478899999973 3321111122334577
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCC-e---eeeEee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEE-
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNG-S---CAGVFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 716 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~---~~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~- 716 (835)
.++|+|+++.+++++..++.|.+|++.+. . .+..+. .+...++++|+++++++++. ++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 89999999988877777999999999742 2 222222 23567889999999987775 5899999998632221
Q ss_pred ------EEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCcceEEEeecC------CCceEEEEEeCCCCEE
Q 003271 717 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL 781 (835)
Q Consensus 717 ------~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~~------~~~V~sv~fspdg~~L 781 (835)
.+. .......+.|+|+|++++++. ++.|.+||+... ...+.+..+... ......+.++|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 234567899999999998877 789999999742 122334443321 1123468899999999
Q ss_pred EEEEc-CCeEEEEEcCCCc-EEEeccC---CCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 003271 782 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 835 (835)
Q Consensus 782 ~sgs~-dg~I~IwDl~~~~-~~~l~~h---~~~V~~la~spdg~~LaSgs~-DG~V~IWd 835 (835)
+++.. ++.|.+|++.... ...+..+ ......++|+|+|++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 6799999986432 2222222 235678999999999887775 88999984
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=173.27 Aligned_cols=264 Identities=16% Similarity=0.298 Sum_probs=191.8
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEecCCCCc-eeEEeecCC-CCe
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 643 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~-~~V 643 (835)
..+|++...|.|++||..++..+..+++|...+..++|.. ....+.+|+.||+|++||++.... ....+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688899999999999999999999999999999999977 467899999999999999997654 234455555 456
Q ss_pred EEEEEcCCCCcEEEEEe----CCCcEEEEECCCCee-eeEe----ecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCe
Q 003271 644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVF----KSGATQMRFQPRL-GRILAAAIENYISILDVETQV 713 (835)
Q Consensus 644 ~sl~fsp~g~~ll~sgs----~Dg~I~iwDl~s~~~-~~~~----~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~ 713 (835)
.|++..-. +.++++|. .+..|.+||++.... ++.+ ...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 45777764 467899999998765 4433 4569999999986 678889999999999998542
Q ss_pred ---EEEEEcCCCCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCcceEEEeecC------------CCceEEEEEeC
Q 003271 714 ---CRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 776 (835)
Q Consensus 714 ---~i~~l~~h~~~I~sl~fspdg--~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~------------~~~V~sv~fsp 776 (835)
.+.....|...|.++.|..++ ++.+.....+..+|+++.+.. ...+... -..+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 233344578889999999887 544444499999999988742 1111111 11222222233
Q ss_pred CCCEEEEEEc-CCeEEEEEcC---CCcEE----Eec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 777 TFPSLLVIGC-YETLELWNMT---ENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 777 dg~~L~sgs~-dg~I~IwDl~---~~~~~----~l~-~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+...+++++. .++..++-+. ++... .+. +|...|+++.|...+.+++||+.||.|.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4445555554 5555555433 33322 344 4778899999998899999999999999995
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.7e-18 Score=183.98 Aligned_cols=255 Identities=18% Similarity=0.193 Sum_probs=194.8
Q ss_pred ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC
Q 003271 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (835)
Q Consensus 497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D 576 (835)
+....+...+..+++++.|+.+++|..... .......+..+.++++|.++|.|+++.+++..+++|+.|
T Consensus 297 ir~l~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred hhhhhcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 345567788899999999999999955331 223456778899999999999999999999999999999
Q ss_pred CeEEEEEcCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271 577 KKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (835)
Q Consensus 577 g~I~VWd~~t----------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl 646 (835)
|+|+.|++.. ......+.+|++.|+.++++.....|++++.||+|++|+......+........+...++
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV 445 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence 9999995531 123467789999999999999988999999999999999886554222222222344566
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 716 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~ 716 (835)
++......+.++...-+.--+++++....+..+. ..+..+.++|.....+++..|+.|+++|..++..++
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 6654432233333333333344444444444443 226678889999999999999999999999999999
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC
Q 003271 717 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 765 (835)
Q Consensus 717 ~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~ 765 (835)
....|...++++++.|+|-+|.+++ |+.|++|.+... .|+.....|
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~~ 572 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTAH 572 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccch---heeeccccc
Confidence 9999999999999999999999999 999999998765 555555444
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=2e-18 Score=194.90 Aligned_cols=272 Identities=19% Similarity=0.315 Sum_probs=215.0
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
.++.+.+|.+.|+|+.|...|.++++|+.|..|+||..++..+...+.+|.+.|++++.+.+..++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-----e--ecCceEEEEecCCCEEEEEE
Q 003271 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----F--KSGATQMRFQPRLGRILAAA 699 (835)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-----~--~~~i~~l~fsp~~~~ll~~s 699 (835)
.++. ++..+.+|++.|++|+|+|-. +.+.||++++||.+-...+.. + +.-+..+.|...+..+++++
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9866 588899999999999999863 677899999999982111111 1 12255666777788888999
Q ss_pred cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 700 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 700 ~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
.|+.-..|....... +...+.-+.++.+- .+.++.- +..+++|++.++ ...+.+.+|...+..+.++|-
T Consensus 336 ~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred CCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCC
Confidence 988877776643211 22222222222222 3334443 789999999998 778888899999999999998
Q ss_pred CCEE-EEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 778 FPSL-LVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 778 g~~L-~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
...+ ..++.||.+.|||+-.+..+ ...+| +.+.+.+|++||..++....-|.+.|.
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 7655 46788999999999988876 33454 556678999999988887777777764
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=2.1e-16 Score=162.68 Aligned_cols=272 Identities=18% Similarity=0.253 Sum_probs=198.8
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEe-------CCCCEEEEEeCCCeE
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS-------PDGKLLATGGHDKKA 579 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fS-------pdg~~Lasgs~Dg~I 579 (835)
..+.+-+.|..+.+|..+.+....+.-+.. .... ...++.. ....|+..+|- |+..++|+.+.|.-|
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~~~~~-~~~~---~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKADGPL-NFSK---HLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCCCCcc-cccc---ceeEEec--cCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 466777889999999444432222211100 0000 1112222 23458888876 577899999999999
Q ss_pred EEEEcCCCeEEEEecc--CCC---CeEEEEECCCCCEEEEEECCCeEEEEecC-CCCc-eeEEee-----cCCCCeEEEE
Q 003271 580 VLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDTE-NPDY-SLRTFT-----GHSTTVMSLD 647 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~--h~~---~V~sv~fspdg~~Latgs~Dg~I~IWDl~-t~~~-~~~~~~-----~h~~~V~sl~ 647 (835)
++||.-+|+....+.. |-+ ...+++|+|||..|++| ....|+|+|+. .+.. .+.... +..+.|.|++
T Consensus 136 h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 136 HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 9999999998877754 333 34689999999999877 66789999994 3332 122222 2367899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEc-CCcEEEEECCC-CeEEEEEcCCC
Q 003271 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAI-ENYISILDVET-QVCRLKLQGHK 722 (835)
Q Consensus 648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t-~~~i~~l~~h~ 722 (835)
|+|.....++.++....+-||.-.....+..+ .++|+.++|.++|+.|++|+. +..|..||++. ..++..+..|.
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence 99998888999999999999988877776655 466999999999999999986 68999999996 45666777665
Q ss_pred C-CeEE--EEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 723 N-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 723 ~-~I~s--l~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
. .-.. ....|++++|++|+ ||.|++||+.... ..+..+..+...++.++++|--+.+++++..
T Consensus 295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cCccceEEEecCCCCceeeccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeeccCc
Confidence 5 2223 44578999999998 9999999998742 4566677788899999999998766666554
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1.6e-16 Score=167.36 Aligned_cols=226 Identities=14% Similarity=0.268 Sum_probs=181.3
Q ss_pred EeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 592 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 592 ~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
.+.+|+++|.+++|+| +...||+||+|.+|.||.+..+. .++..+.+|...|-.+.|+|.-.++|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3468999999999999 46789999999999999987543 3467889999999999999999999999999999
Q ss_pred EEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe
Q 003271 665 IRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs 741 (835)
|.+||+.+++.+..+..+ +.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.+|-
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 999999999988777643 88999999999999999999999999999999988877765 344567888898666664
Q ss_pred ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEE----EeccCCCCeeE
Q 003271 742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSS 812 (835)
Q Consensus 742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~----~l~~h~~~V~~ 812 (835)
+..+-+||-.+........++.. .+.|.---|.++...|+.++ .|+.|+.|.+...... .......+=..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 66999999887765555555554 55677777889988877666 4789999999877633 22223334455
Q ss_pred EEEeCC
Q 003271 813 LAASTV 818 (835)
Q Consensus 813 la~spd 818 (835)
|.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555554
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.2e-16 Score=160.38 Aligned_cols=261 Identities=20% Similarity=0.286 Sum_probs=193.2
Q ss_pred EEEEEe----CCCeEEEEEcCCCe--E-EEEeccCCCCeEEEEECCC-CCEEEEEECC-------CeEEEEecCCCCce-
Q 003271 569 LLATGG----HDKKAVLWCTESFT--V-KSTLEEHTQWITDVRFSPS-LSRLATSSAD-------RTVRVWDTENPDYS- 632 (835)
Q Consensus 569 ~Lasgs----~Dg~I~VWd~~t~~--~-i~~l~~h~~~V~sv~fspd-g~~Latgs~D-------g~I~IWDl~t~~~~- 632 (835)
.|++|. .|+.|.+.+++... + .+.|..|.+.|+.++-+|. .++|+|+..| -.+.||.+......
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 344554 46778777766432 2 2556778899999999995 5556665442 25789998754321
Q ss_pred -------eEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee--------cCceEEEEec-CCCE
Q 003271 633 -------LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK--------SGATQMRFQP-RLGR 694 (835)
Q Consensus 633 -------~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~--------~~i~~l~fsp-~~~~ 694 (835)
+..+. .+-+.|.|+.|.|++..+++. .|..|.+|++..+.. +..+. ...++-+|+| ..+.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 12222 345689999999998766533 389999999987765 33332 2255667888 4456
Q ss_pred EEEEEcCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271 695 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 771 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s 771 (835)
-++...|+++..||+++..+...+. .|...|..+.|+|+.. +|++|+ ||.|+|||.+..+ ..+.++.+|...|++
T Consensus 186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWA 263 (370)
T ss_pred eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEE
Confidence 6677788999999999987777665 4888999999999875 456666 8999999999764 688899999999999
Q ss_pred EEEeCCC-CEEEEEEcCCeEEEEEcCC------------------------------CcEEEeccCCCCeeEEEEeCCCC
Q 003271 772 CVFHPTF-PSLLVIGCYETLELWNMTE------------------------------NKTLTLSAHDKLVSSLAASTVNG 820 (835)
Q Consensus 772 v~fspdg-~~L~sgs~dg~I~IwDl~~------------------------------~~~~~l~~h~~~V~~la~spdg~ 820 (835)
+.|+|.. ..|++++.|..|.+|.... +.+.++..|++.|++++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9999975 5677888898999987521 11225668999999999998666
Q ss_pred -EEEEEECCCcEEE
Q 003271 821 -MVASASHDKCVKI 833 (835)
Q Consensus 821 -~LaSgs~DG~V~I 833 (835)
+||+-++||+|.|
T Consensus 344 WiFASLSYDGRviI 357 (370)
T KOG1007|consen 344 WIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccCceEEe
Confidence 6788899999876
No 175
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=180.03 Aligned_cols=289 Identities=20% Similarity=0.294 Sum_probs=226.1
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECCC--CCEEEEEECCCeEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS--LSRLATSSADRTVR 622 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fspd--g~~Latgs~Dg~I~ 622 (835)
.....|..|.+.|..|.|+..|..|++|+.|..|.+||...++.+..+ .+|...|.-..|.|. ...+++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 445678899999999999999999999999999999999988877666 579889988889884 56799999999999
Q ss_pred EEecCCCCcee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCceEEEEecC
Q 003271 623 VWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGATQMRFQPR 691 (835)
Q Consensus 623 IWDl~t~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~ 691 (835)
+=.+....++. ..+..|.++|..++..|+..+-|.+|+.|+.+.-+|++.+.....+. .....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 98877655433 45667999999999999999999999999999999998775443332 23567888887
Q ss_pred CC-EEEEEEcCCcEEEEECCCCe------EEEEEcC------CCCCeEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCC--
Q 003271 692 LG-RILAAAIENYISILDVETQV------CRLKLQG------HKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK-- 755 (835)
Q Consensus 692 ~~-~ll~~s~dg~I~IwDl~t~~------~i~~l~~------h~~~I~sl~fspdg-~~LasgsDg~I~IwDl~t~~~-- 755 (835)
.. .+++++.|-.+++||.+.-. .+..+.. ..-.|+|++|+.++ .+|++-.|-.|++|.-..+..
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 75 67888899999999987532 1233322 34579999999655 566666688999995433211
Q ss_pred c-------ceEEE-eecCCC--ceEEEE-EeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271 756 G-------ECIHE-LSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 823 (835)
Q Consensus 756 ~-------~~i~~-l~~~~~--~V~sv~-fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La 823 (835)
. ..+.. +++|.+ .|..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+-...|+||.=+|--.+||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 0 11222 556654 355554 5688899999999999999999999988 3444445899999999999999
Q ss_pred EEECCCcEEEe
Q 003271 824 SASHDKCVKIW 834 (835)
Q Consensus 824 Sgs~DG~V~IW 834 (835)
+++-|..||||
T Consensus 453 sSGid~DVKIW 463 (559)
T KOG1334|consen 453 SSGIDHDVKIW 463 (559)
T ss_pred ccCCccceeee
Confidence 99999999999
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=2.1e-16 Score=163.20 Aligned_cols=240 Identities=20% Similarity=0.304 Sum_probs=182.9
Q ss_pred CCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecC
Q 003271 553 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 553 gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~ 627 (835)
.|....+.|+|+-| ..+||+|+.-|.|+|.|+.++++...+.+|...|..|.|+|+ ..+|+++|.|..|++||+.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46677888888764 347999999999999999999999999999999999999997 5689999999999999999
Q ss_pred CCCceeEEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---------------eec--------
Q 003271 628 NPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---------------FKS-------- 681 (835)
Q Consensus 628 t~~~~~~~~---~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~---------------~~~-------- 681 (835)
+..+ +..+ .+|.+.|.+++|++++. .|++|+.|..|++|++...+.... |..
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8764 5444 57999999999999988 777999999999999984322111 100
Q ss_pred --------CceEEEEecCCCEEEEEEcCCcEEEEECC-CC-------------eEEEEEcCCCCCeEEE--EEcCCCCEE
Q 003271 682 --------GATQMRFQPRLGRILAAAIENYISILDVE-TQ-------------VCRLKLQGHKNQVHSV--CWNTSGEYL 737 (835)
Q Consensus 682 --------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~-------------~~i~~l~~h~~~I~sl--~fspdg~~L 737 (835)
.+.|+.|- |+++++-+.++.|..|... -. ..+..+.-....|.-+ +|++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01122222 4678888889999999772 11 1222333334445544 556778999
Q ss_pred EEEe-CCeEEEEEcCCCCCcce-EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 738 ASVS-DELVRVWSIGSGSKGEC-IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 738 asgs-Dg~I~IwDl~t~~~~~~-i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
+.|. .|.|++||++......+ ..........|...+|+.|+..|+..+.|+.|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999 99999999998755322 22223345678999999999999999999999999853
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=5.8e-16 Score=178.98 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=205.6
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccC---CCCeEEEEECC--CCCEEEEEECCCeEEEEecCCC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h---~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~ 629 (835)
...-..+.|+|=...++++...-.|+|||.+.++....|..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 334567888888888999987789999999999998777544 34688888865 5678999999999999974322
Q ss_pred C----ceeEEee-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEE-ecCCC
Q 003271 630 D----YSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRF-QPRLG 693 (835)
Q Consensus 630 ~----~~~~~~~-------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~f-sp~~~ 693 (835)
. ..+..+. +..+.-.-++|.....+++++|+ -..|+|||.....++..+..+ ++.+.- ...|+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 1 1121111 11122245677777676776665 789999999988888776643 344432 23368
Q ss_pred EEEEEEcCCcEEEEECCCC---eEEEEEcCCCCC--eEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCcceEEEeecC-
Q 003271 694 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT- 765 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~--I~sl~fspdg~~-Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~- 765 (835)
.+++|..||.|++||.+.. ..+.....|... |..+.+.+.|.- |++++ ||.|++||++.... ....++..|
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999864 345667778877 999999887654 88888 99999999998522 222233332
Q ss_pred --CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 766 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 766 --~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-------h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++..+++..|+..+.|++|+. +.|+||++.......+.. ..+.+.|++|+|-.-++|+|+.|.+|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998888888 999999998766543322 235689999999998999999999999983
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=5.9e-16 Score=157.46 Aligned_cols=239 Identities=19% Similarity=0.330 Sum_probs=178.8
Q ss_pred cCCCCCEEEEEEeCCCC-----EEEEEeCCCeEEEEEcCC--CeEE--EEe-----ccCCCCeEEEEECC-CCCEEEEEE
Q 003271 552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 616 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~-----~Lasgs~Dg~I~VWd~~t--~~~i--~~l-----~~h~~~V~sv~fsp-dg~~Latgs 616 (835)
..|.-+++.+-|.|+.. +||+++ ..+++|.+.. .+.. ..+ ..+..++++..|+. +.++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999763 466654 4899998873 2211 111 34677999999987 678999999
Q ss_pred CCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee------cCceEEEE
Q 003271 617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------SGATQMRF 688 (835)
Q Consensus 617 ~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------~~i~~l~f 688 (835)
-|-++.|||++++. .....+..|..+|..|+|...+..+|++++.||.||+||++..+....+- .+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999862 34677889999999999999889999999999999999999876544432 23556778
Q ss_pred ecCCC-EEEEEEcC-CcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCC---cceEE
Q 003271 689 QPRLG-RILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---GECIH 760 (835)
Q Consensus 689 sp~~~-~ll~~s~d-g~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~---~~~i~ 760 (835)
++.+- ++++...| ..|.|.|++.. .++..+.+|...|..++|.|.. ..|++++ |..+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 77664 44444444 68999999964 7788999999999999999964 6777777 78999999976422 12233
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 761 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 761 ~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
.+. .+..|+.+.|++..+--++...++++.|.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 333 57789999999765434444444455543
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.7e-15 Score=173.82 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=188.3
Q ss_pred CeEEEEEcCCC-eEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCce-----eEEeecCCCCeEEEEEc
Q 003271 577 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS-----LRTFTGHSTTVMSLDFH 649 (835)
Q Consensus 577 g~I~VWd~~t~-~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~-----~~~~~~h~~~V~sl~fs 649 (835)
+.+.||+++.. .+...+ .....|.|++|+|. ..+|+.|+.+|.|.+||+...... -.....|..+|..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999875 344444 35678999999994 678888999999999999876542 12345688999999997
Q ss_pred CCCCc-EEEEEeCCCcEEEEECCCCeeee--------E-------eecCceEEEEecCC-CEEEEEEcCCcEEEEECCCC
Q 003271 650 PSKED-LLCSCDNNSEIRYWSINNGSCAG--------V-------FKSGATQMRFQPRL-GRILAAAIENYISILDVETQ 712 (835)
Q Consensus 650 p~g~~-ll~sgs~Dg~I~iwDl~s~~~~~--------~-------~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~ 712 (835)
.+... -|++++.||.|..|+++.-.... . -...++++.|.+.. ..+++|+.+|.|+.-.-...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65332 35577789999999987543311 0 01347788888865 56888888899887433321
Q ss_pred ---e-----EEEEEcCCCCCeEEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE-
Q 003271 713 ---V-----CRLKLQGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL- 782 (835)
Q Consensus 713 ---~-----~i~~l~~h~~~I~sl~fspdg~~L-asgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~- 782 (835)
. ....+..|.++|+++.++|-+..+ .+++|-+|+||..... ...+..+..+...+++++|+|..+.++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--CCcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 122455688999999999977544 4445999999997732 156667777778899999999987655
Q ss_pred EEEcCCeEEEEEcCCCcE---EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 783 VIGCYETLELWNMTENKT---LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 783 sgs~dg~I~IwDl~~~~~---~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++..+|.|.|||+..... ....-+....+.+.|++.|++|++|...|+|++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 455589999999865442 24444566778888999999999999999999985
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=4.1e-16 Score=164.19 Aligned_cols=202 Identities=20% Similarity=0.326 Sum_probs=162.7
Q ss_pred EEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEECC
Q 003271 548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSAD 618 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~i~~l~~h~~~V~sv~fspd-g~~Latgs~D 618 (835)
.-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|+|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 335679999999999999 5568999999999999998643 456788999999999999996 5689999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGR 694 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ 694 (835)
.+|.|||+.++.. +..+. |.+-|++++|+.+|. ++++.+.|+.|+|||.++++.+..-.++ ...+.|-.++.
T Consensus 154 n~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 9999999999885 34444 999999999999987 7779999999999999999988765432 45566777777
Q ss_pred EEEEEc----CCcEEEEECCCCeE---EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC
Q 003271 695 ILAAAI----ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS 754 (835)
Q Consensus 695 ll~~s~----dg~I~IwDl~t~~~---i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~ 754 (835)
+++.+. +..+-+||...-+. ...+. ..+.|.---|++|..+|+.++ |+.|+.|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 554443 57899998875432 23333 455676667889999888887 9999999998763
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=2.5e-15 Score=176.47 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=207.8
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-------~~~i~~l~~h~~~V~sv~fspdg~~Latg 615 (835)
....+..+..|...|..++.+++. .++++|+.||+|+||+... .+...++......+.++.+.+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 445678888999999999988755 8999999999999999753 22334444456789999999999999999
Q ss_pred ECCCeEEEEecCCCCc------eeEEeecCC-C-CeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEee-----c
Q 003271 616 SADRTVRVWDTENPDY------SLRTFTGHS-T-TVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK-----S 681 (835)
Q Consensus 616 s~Dg~I~IWDl~t~~~------~~~~~~~h~-~-~V~sl~fsp~g~-~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~ 681 (835)
+.||.|++.+++.... ..+....+. + .|..-+|..... .+++.+...+.|..||+++......++ +
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999886221 111122222 2 233334443333 377788888999999999876655443 3
Q ss_pred CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCC---CCEEEEEe---CCeEEEEEcCCCC
Q 003271 682 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGS 754 (835)
Q Consensus 682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspd---g~~Lasgs---Dg~I~IwDl~t~~ 754 (835)
-+++++.+|.+.+++.|+..|.+.+||++-+.++.... ++..+|..++.+|- ....++++ .+.|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 49999999999999999999999999999988887665 34567777776653 34555544 5699999999873
Q ss_pred CcceEEEeec-------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--------------
Q 003271 755 KGECIHELSC-------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------------- 801 (835)
Q Consensus 755 ~~~~i~~l~~-------------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------------- 801 (835)
. -..+.. +......+++...+.++++|+.|..|+.||....+..
T Consensus 1277 ~---~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1277 R---QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred c---eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence 2 222211 1122344566666778999999999999997432100
Q ss_pred -------------------------------------------EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003271 802 -------------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 835 (835)
Q Consensus 802 -------------------------------------------~l~~h~~~V~~la~spdg-~~LaSgs~DG~V~IWd 835 (835)
....|.+.|++|++.... .+|++++.||.|+||+
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 012366778888876543 4899999999999996
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.7e-15 Score=146.90 Aligned_cols=266 Identities=15% Similarity=0.173 Sum_probs=190.7
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
.|.+-+|+|.+++|++|..+|.|.++.+++ ...+....+|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 477788999999999999999999998753 234455588999999999983 4677665 599999987
Q ss_pred CCCCcee-------EEeecC-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecC
Q 003271 627 ENPDYSL-------RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPR 691 (835)
Q Consensus 627 ~t~~~~~-------~~~~~h-----~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~ 691 (835)
....... ....-| -..|+++-..|..+.++.+| .|+.++.||+++|+..+.++++ +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432210 011112 24688999999877777666 5999999999999999999877 566666566
Q ss_pred CCEEEEEEcCCcEEEEECCCCeEEEEEcCC----------CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEE
Q 003271 692 LGRILAAAIENYISILDVETQVCRLKLQGH----------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 692 ~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h----------~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~ 761 (835)
...+++|+.||++++||.++.+++..+... ...|.+++ -+..++++|....+.+|.+++. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence 788999999999999999999998876531 22455555 4677898888889999999987 34433
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003271 762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW 834 (835)
Q Consensus 762 l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spd-g~~LaSgs~DG~V~IW 834 (835)
+. -...+..|.|..+ .+++++....|.-|.+..--...........+...|+.. -++|-.++....+.|+
T Consensus 243 fp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Ee-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33 2456777888655 577777777899888765333333333333444444432 2455566666677665
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7e-16 Score=160.24 Aligned_cols=272 Identities=15% Similarity=0.191 Sum_probs=195.1
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 582 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~VW 582 (835)
.+..++++...+.|++|.. ..+ ..+..+++|...+..+.|.. ....+.+|+.||+|++|
T Consensus 39 ~e~~vav~lSngsv~lyd~----------------~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDK----------------GTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cceeEEEEecCCeEEEEec----------------cch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 4578899999999999922 122 23445567777788888876 45679999999999999
Q ss_pred EcCCCeEEEE--eccCC-CCeEEEEECCCCCEEEEEEC----CCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCc
Q 003271 583 CTESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 583 d~~t~~~i~~--l~~h~-~~V~sv~fspdg~~Latgs~----Dg~I~IWDl~t~~~~~~-~~~~h~~~V~sl~fsp~g~~ 654 (835)
|+++...... +..|. .+..|++.+.++..+++|.. |-.|.+||++.....++ ....|.+.|+++.|+|...+
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 9988665533 34555 46677777777888888754 67899999998776443 45679999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCee----eeEee--cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----
Q 003271 655 LLCSCDNNSEIRYWSINNGSC----AGVFK--SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK----- 722 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~~----~~~~~--~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~----- 722 (835)
+|++|+.||.|.+||++.... +.++. ..|..+.|..++ +.|.+.+......+|+++.+.+...+....
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 999999999999999976532 23333 447888888775 578999999999999999887665543211
Q ss_pred --------CCeEEEEEcCCCCE-EEEEe-CCeEEEEEcC---CCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003271 723 --------NQVHSVCWNTSGEY-LASVS-DELVRVWSIG---SGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 723 --------~~I~sl~fspdg~~-Lasgs-Dg~I~IwDl~---t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg 788 (835)
.-|.+.+ ..++.+ ++.++ -+...++-+. ++.....+..+.+ |...|.++.|.-.+.++++|+.||
T Consensus 260 ~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG 338 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG 338 (376)
T ss_pred HHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCc
Confidence 1122221 122333 33344 4455555433 3333344444554 667788999998999999999999
Q ss_pred eEEEEEcC
Q 003271 789 TLELWNMT 796 (835)
Q Consensus 789 ~I~IwDl~ 796 (835)
.|.+|...
T Consensus 339 ~l~~Wk~~ 346 (376)
T KOG1188|consen 339 LLQAWKVE 346 (376)
T ss_pred eEEEEecC
Confidence 99999863
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.1e-15 Score=147.25 Aligned_cols=227 Identities=19% Similarity=0.215 Sum_probs=167.3
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271 599 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD 669 (835)
.|..-+|+|.+++|++|..+|.|.++.+.+ ++..+..+.+|.++|+.++|+.+ ++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEEEee
Confidence 466678999999999999999999998753 23345566899999999999933 565776 69999998
Q ss_pred CCCCeeee------Ee---------e-cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271 670 INNGSCAG------VF---------K-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733 (835)
Q Consensus 670 l~s~~~~~------~~---------~-~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd 733 (835)
.+...... .. . ..+..+-..|..+-++.++.|+.++.||+++++....+.+|...|+++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 76432210 00 1 34788899999999999999999999999999999999999999999998444
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCcceEEEeec------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc
Q 003271 734 GEYLASVS-DELVRVWSIGSGSKGECIHELSC------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 805 (835)
Q Consensus 734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~------~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~ 805 (835)
..-|++|+ ||+++|||.++.+....+...+. + +..|-+++. +..++++|+ ...+.+|+++..++..+..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 44455666 99999999999843333322211 1 223444444 444565554 4589999999999987777
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 806 HDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 806 h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
-...|..+.|.. +.+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeee
Confidence 778888888864 346666655555444
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9.8e-15 Score=167.72 Aligned_cols=280 Identities=17% Similarity=0.286 Sum_probs=209.7
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC----CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
..|.-.++|.++||+++++|+|..||.|.||.--. ......+.=|.+.|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35666799999999999999999999999996322 12335667799999999999999999999999999999999
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--------------cCceEEEEecCCC
Q 003271 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------SGATQMRFQPRLG 693 (835)
Q Consensus 628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--------------~~i~~l~fsp~~~ 693 (835)
+++ ...+..-.++|..+.++|+++.+. .+..|..|.+....+.+....+. +-.+.++++|.-+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 987 466777788999999999987544 55569999998875544332221 2256788999888
Q ss_pred EEEEEEcCCcEEEEECCCCeEEEEEcC-----C------CCCeEEEEEcCCCCEEEEEe---------CC--eEEEEEcC
Q 003271 694 RILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG 751 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h------~~~I~sl~fspdg~~Lasgs---------Dg--~I~IwDl~ 751 (835)
.++..+..+.|.+||+-+.+.+..+.. + .-.++.++.+..|.++++.. || .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 888899999999999998776655431 2 22467777788899998874 22 68899877
Q ss_pred CCCCcceEEE--eecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEEcCCCc----------EE-EeccCCCCeeEEEEe
Q 003271 752 SGSKGECIHE--LSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS 816 (835)
Q Consensus 752 t~~~~~~i~~--l~~~~~~V~sv~fsp-dg~-~L~sgs~dg~I~IwDl~~~~----------~~-~l~~h~~~V~~la~s 816 (835)
.....-.+.+ ...|+..+...++.+ ... .+++++.||.++||-+.+.+ +. .-.-|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 6543222222 335666655555543 333 78999999999999883322 22 122478999999999
Q ss_pred CCCCEEEEEECCCcEEEeC
Q 003271 817 TVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 817 pdg~~LaSgs~DG~V~IWd 835 (835)
.||.+ ++++.|++|.|||
T Consensus 519 ~dGsl-la~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSL-LAVSFDDTITIWD 536 (792)
T ss_pred CCCcE-EEEecCCEEEEec
Confidence 99964 5566788999997
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.7e-15 Score=168.10 Aligned_cols=231 Identities=16% Similarity=0.113 Sum_probs=162.5
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g 652 (835)
+..|.|||.+... ...+..|...+.+++|+|||+.|+.++.+ ..|++||+.++.. ..+........+++|+|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccCceeECCCC
Confidence 4689999987655 45666788899999999999999988754 3699999987653 1222222334578999999
Q ss_pred CcEEEEEeCCCcEE--EEECCCCeeeeEee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCC--CeEEEEEcCCCCCe
Q 003271 653 EDLLCSCDNNSEIR--YWSINNGSCAGVFK--SGATQMRFQPRLGRILAAA-IENYISILDVET--QVCRLKLQGHKNQV 725 (835)
Q Consensus 653 ~~ll~sgs~Dg~I~--iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t--~~~i~~l~~h~~~I 725 (835)
+.++++.+.+|.+. +||+.+++...... ..+....|+|++..+++++ .++.+.||++.. +.. ..+ .+..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~-- 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG-- 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--
Confidence 98887777788655 45666665443322 3367899999999887766 467777776643 322 222 3433
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc---CCCcEEE
Q 003271 726 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTLT 802 (835)
Q Consensus 726 ~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl---~~~~~~~ 802 (835)
.++.|+|||++|+..+...+.+||+.++. ... +... .....+.|+|++++|++++.++.+.+|++ .......
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~---~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGS---TEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCC---eEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 46789999999988884556779998873 221 1111 12356789999999999999987777664 3334446
Q ss_pred eccCCCCeeEEEEeCC
Q 003271 803 LSAHDKLVSSLAASTV 818 (835)
Q Consensus 803 l~~h~~~V~~la~spd 818 (835)
+..|.+.+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7788888999999984
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=3.8e-15 Score=164.67 Aligned_cols=238 Identities=16% Similarity=0.219 Sum_probs=182.6
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
...++++|.+.|+|++|+.||+.+|+|+.|+.|.||+..-...+ .+ .|.+.|.|+.|+|-...|++++-.. .-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence 46778999999999999999999999999999999986432222 23 5999999999999999999987653 678887
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCC-----CEEE
Q 003271 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRL-----GRIL 696 (835)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~-----~~ll 696 (835)
+.... ... .....|.+.+|..||. +++.|-.+|+|.+-+-...+.+..-. .++.+++|+|.. ..+.
T Consensus 122 ~qK~V--~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQKSV--SKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhhH--Hhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 75432 111 1235688999999986 66788889999998765433333322 458999999975 4566
Q ss_pred EEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271 697 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 697 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs 775 (835)
+.....++.+|.+.. +.+..-..-.-...|+.+.++|.|+..|+ |+.+.+|.-. + ..+.++......|+.+...
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 677777777777653 33332222344567899999999999888 9999999643 2 5666777778899999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcC
Q 003271 776 PTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 776 pdg~~L~sgs~dg~I~IwDl~ 796 (835)
|++.++++|+.||+|..|++.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999974
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.7e-13 Score=143.99 Aligned_cols=231 Identities=16% Similarity=0.231 Sum_probs=172.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--eEEEEecCCCCce
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS 632 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~ 632 (835)
...|..+.|+.|...|..|+.|| .++|+.+..............|..+-|+. .++|..+.+. .++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence 44577888999999999999887 67888776554333333334566666654 4666665543 589999886553
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC------ceEEEEecCCCEEEEEE--cCCcE
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG------ATQMRFQPRLGRILAAA--IENYI 704 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~------i~~l~fsp~~~~ll~~s--~dg~I 704 (835)
+..+ ....+|.++.++.+ .++++-. ..|+|||+++.+.++++... +..+.++..+.+++.-+ ..|.|
T Consensus 81 ICe~-~fpt~IL~VrmNr~---RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEI-FFPTSILAVRMNRK---RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEE-ecCCceEEEEEccc---eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 2222 24568999999854 3445543 34999999999998877532 34444444445666533 35899
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecC--CCceEEEEEeCCCCE
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 780 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fspdg~~ 780 (835)
.+||+.+-+.+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++ ..+.+++.. ...|.+++|+|++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 45 7999999988 666666543 345789999999999
Q ss_pred EEEEEcCCeEEEEEcCC
Q 003271 781 LLVIGCYETLELWNMTE 797 (835)
Q Consensus 781 L~sgs~dg~I~IwDl~~ 797 (835)
|.+.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.6e-15 Score=161.85 Aligned_cols=260 Identities=17% Similarity=0.243 Sum_probs=190.5
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEE-CC-------CCCEEEEEECCCeEEEE
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 624 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~f-sp-------dg~~Latgs~Dg~I~IW 624 (835)
-|...|.||.|+.+...+.+++ |..+.+|...+......+....+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778999998877666665 555655544333333333222232222222 11 23578889999999988
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEeecCceEEEEecCCCEEEEEEcCC
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKSGATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~--~~~~~~~~~i~~l~fsp~~~~ll~~s~dg 702 (835)
+-.. + ..+....|.+.|.|-.|+|+|.-++ +.++||.|++|.-... ..+......+.|++|.|+.+.++.+. .+
T Consensus 91 ~k~~-r-VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKSA-R-VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred cccc-h-hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 7553 2 3567788999999999999988554 8889999999986532 12233456799999999988776654 47
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
.++|-.+.-...+...+.|.+-|.++.|++..++|++|+ |-..+|||-.. ..+..-..|..+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cce
Confidence 788888887777888899999999999999999999999 88999999654 466677788999999999999 433
Q ss_pred EEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 782 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
+++ +.+++++ .....+.|..++||+||..+++|+..|.|.+
T Consensus 242 ~v~-S~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LLW-SYNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eeeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 333 3334442 1244578999999999999999999987754
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.6e-13 Score=153.29 Aligned_cols=284 Identities=17% Similarity=0.175 Sum_probs=184.2
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 624 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IW 624 (835)
..+..+......-..+.|++||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.|.|+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence 4455555544434457899999999999999999999999999999997654 467899999999998776 58999999
Q ss_pred ecCCCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEee--cCceEEEEecCCC
Q 003271 625 DTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--SGATQMRFQPRLG 693 (835)
Q Consensus 625 Dl~t~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~~--~~i~~l~fsp~~~ 693 (835)
|..+.+. +..+.. ....+..|..++.+..++++--+.+.|.+.|....+.+ ..+. .......|+|++.
T Consensus 106 D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 106 DAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp ETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred ccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 9998764 444332 23467888888887767766666789999998765433 3333 2367789999999
Q ss_pred EEEEEEc-CCcEEEEECCCCeEEEEEcC----CCCCeEEEE-------Ec--CCCCEE-EEEeCCeEEEEEcCCCCCcce
Q 003271 694 RILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDELVRVWSIGSGSKGEC 758 (835)
Q Consensus 694 ~ll~~s~-dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~-------fs--pdg~~L-asgsDg~I~IwDl~t~~~~~~ 758 (835)
+++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+.+. ...+.+.+.+||..+. +.
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kv 261 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KV 261 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eE
Confidence 9888664 68999999999988776542 444444332 21 122222 2222445556776665 78
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEEcCCCcEEEeccC--CCCeeEEEEeCCCCEEEEEECCC--c
Q 003271 759 IHELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTLTLSAH--DKLVSSLAASTVNGMVASASHDK--C 830 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~~L~sg---s-~dg~I~IwDl~~~~~~~l~~h--~~~V~~la~spdg~~LaSgs~DG--~ 830 (835)
+.++...+.. ..+..+|+++++++. + ..+.|.++|..+.+.+..... ...+..+.|+++|+.+..+..|+ .
T Consensus 262 v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 262 VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence 8888877666 888899999999998 3 346999999999987644332 23499999999999666555443 6
Q ss_pred EEEeC
Q 003271 831 VKIWK 835 (835)
Q Consensus 831 V~IWd 835 (835)
|.|||
T Consensus 341 i~v~D 345 (369)
T PF02239_consen 341 IVVYD 345 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98886
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.1e-14 Score=150.57 Aligned_cols=282 Identities=14% Similarity=0.155 Sum_probs=211.4
Q ss_pred CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDK 577 (835)
Q Consensus 499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg 577 (835)
...+...++++++|+.|..+++|..... +... +.+++.... .|...|.|++|....++|++|+.++
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~----------~~~k---~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDEL----------MVRK---TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHH----------Hhhc---CCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 4445556799999999999999932211 1111 112233333 4568999999999999999999999
Q ss_pred eEEEEEcCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce--eEEeecCCCCeEEEEEcCCCC
Q 003271 578 KAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~--h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~--~~~~~~h~~~V~sl~fsp~g~ 653 (835)
+|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||+...... ............++.|+|...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999988877742 2348999999999999999999999999999865432 233344556788999999999
Q ss_pred cEEEEEeCCCcEEEEECCCCeee-e------Eeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE-EEEcCCC
Q 003271 654 DLLCSCDNNSEIRYWSINNGSCA-G------VFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHK 722 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s~~~~-~------~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i-~~l~~h~ 722 (835)
.+|++.+..+-+.+||++..... . .+.. .-..+.|+|.|+.+++.-....-.+||+-+.++. ..+. |.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N 286 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HN 286 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CC
Confidence 99999999999999999865321 1 1111 1356789999999998888777888998875543 3333 32
Q ss_pred -------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------------------cceEEEeecCCCceEEEEE
Q 003271 723 -------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCVF 774 (835)
Q Consensus 723 -------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~--------------------~~~i~~l~~~~~~V~sv~f 774 (835)
..+.+++|..|-. +++|+ +=.|++|.+..... ...+..+.+|...++.+.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 2466788865544 88888 45899999853210 1234467899999999999
Q ss_pred eCCCCEEEEEEcCCeEEEEEc
Q 003271 775 HPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 775 spdg~~L~sgs~dg~I~IwDl 795 (835)
+|....|++.+....++||.-
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cCCcceEeccchhhheecccc
Confidence 999999999999999999964
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.65 E-value=2.1e-14 Score=148.29 Aligned_cols=280 Identities=16% Similarity=0.227 Sum_probs=200.8
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
--..+|+|.+|++|+..+|++.....|.||.... .+..+++..|...|++|+|+|..+.|++++.|..-+||....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3456899999999999999999999999998764 4577899999999999999999999999999999999998433
Q ss_pred -Cc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------eeeEeecCceEEEEecCCCEEEEEEc
Q 003271 630 -DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------CAGVFKSGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 630 -~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-------~~~~~~~~i~~l~fsp~~~~ll~~s~ 700 (835)
+. +...+..++..++++.|+|.++ .|++|+....|.||-.+... ..+.++..+.++.|+|++-.+++|+.
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 32 3455667889999999999965 67788888888888776543 22345567999999999999999999
Q ss_pred CCcEEEEECC-----C-------------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271 701 ENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 701 dg~I~IwDl~-----t-------------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~ 761 (835)
|+..+||..- . +..+..+....+.|..+.|+|+|..|+-.+ |..|.+-|...... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hccc
Confidence 9999988542 1 122233334567899999999999999888 99999999876531 2333
Q ss_pred eecCCCceEEEEEeCC----------CCEEEEEEcCCeEEE-EEcC--CCc-----------------------EE--Ee
Q 003271 762 LSCTGNKFHSCVFHPT----------FPSLLVIGCYETLEL-WNMT--ENK-----------------------TL--TL 803 (835)
Q Consensus 762 l~~~~~~V~sv~fspd----------g~~L~sgs~dg~I~I-wDl~--~~~-----------------------~~--~l 803 (835)
+....-+..++.|-.+ ++.+++.+.++.+.. =++. .+. .. ..
T Consensus 245 ~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~s~s~~lt~a~~kF~~~d~k~~~~~~~~~~~ 324 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKASSSSPLTSAWRKFLGMDRKGRTENDRSARW 324 (361)
T ss_pred hhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccccCCchhHHHHHHHhcccccccccccccccc
Confidence 3333355555555433 344455554541111 1111 100 00 11
Q ss_pred ccCCCCeeEEEEeCCCC----EEEEEECCCcEEEeC
Q 003271 804 SAHDKLVSSLAASTVNG----MVASASHDKCVKIWK 835 (835)
Q Consensus 804 ~~h~~~V~~la~spdg~----~LaSgs~DG~V~IWd 835 (835)
..|...|+.|+....+. .+-+++.||.|.|||
T Consensus 325 ~~h~N~i~~l~~~~~~~~~i~~f~t~g~Dg~~viw~ 360 (361)
T KOG1523|consen 325 GAHQNCITSLRPFAGGKGKITKFSTSGLDGKLVIWD 360 (361)
T ss_pred hHhHhhhhhhhecccCCcceEEEEecCccceEEEec
Confidence 34666676666443222 567888999999997
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=8.2e-15 Score=168.31 Aligned_cols=244 Identities=18% Similarity=0.225 Sum_probs=186.4
Q ss_pred CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeE--E----EEeccCCCCeEEEEECCCC--CEEEEEECCCeEEEE
Q 003271 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--K----STLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 624 (835)
Q Consensus 554 H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~--i----~~l~~h~~~V~sv~fspdg--~~Latgs~Dg~I~IW 624 (835)
....|+|++|+| +..+||.|+.+|.|.+||+..+.. . .....|..+|+.+.|..+. .-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456799999999 566788899999999999987654 2 2224689999999997754 449999999999999
Q ss_pred ecCCCCceeEE-----ee------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----------eEeecC
Q 003271 625 DTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----------GVFKSG 682 (835)
Q Consensus 625 Dl~t~~~~~~~-----~~------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-----------~~~~~~ 682 (835)
+++.-..+... .. .-...++++.|.+...+.++.|+++|.|..-+....+.- ..+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 88743321111 11 123468899999988889999999999987443322111 122355
Q ss_pred ceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCcceE
Q 003271 683 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECI 759 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~fspdg~~-Lasgs-Dg~I~IwDl~t~~~~~~i 759 (835)
+..+.++|-+..++..+.|-+|+||... ...++..+..+...|++++|||.... ++++. ||.|.|||+..... ..+
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 8889999998888887779999999998 67788888888888999999998754 44455 99999999987543 344
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271 760 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 760 ~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~ 798 (835)
.+........+.+.|++.|+.|++|...|.|.+|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444667778888999999999999999999999643
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=165.40 Aligned_cols=236 Identities=17% Similarity=0.257 Sum_probs=171.3
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECC--CCCEEEEEECCCeEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~ 622 (835)
.....+.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+++++|+.|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345678899999999999999999999999999999999988888776 58999999999998 467899999999999
Q ss_pred EEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEe------------e
Q 003271 623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVF------------K 680 (835)
Q Consensus 623 IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~------------~ 680 (835)
++|+.. .....+.+..|...|..|+..|++.+.+.++++||+|+-+|++..... ... .
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985 223456778899999999999999899999999999999999864221 111 1
Q ss_pred cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC-----CCCCeEEEE-EcCCCCEEEEEeCCeEEEEEcCCC
Q 003271 681 SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVC-WNTSGEYLASVSDELVRVWSIGSG 753 (835)
Q Consensus 681 ~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h~~~I~sl~-fspdg~~LasgsDg~I~IwDl~t~ 753 (835)
....++.++|.. .+|++|+.|-..++||.+.......-.+ ......|+. |+|.+- ...+|.+..
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~~------ 271 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLDR------ 271 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCccccccc------
Confidence 236788899976 4577788899999999643211100000 011112221 222211 000111100
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
....++-+.|+|+|..|++.-....|+++|+..++..
T Consensus 272 -----------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 272 -----------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -----------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0123566789999988888888889999999877643
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=7.6e-14 Score=146.66 Aligned_cols=228 Identities=14% Similarity=0.186 Sum_probs=174.0
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCe
Q 003271 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 674 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--g~I~iwDl~s~~ 674 (835)
...+..+.|+.+...|..|+.|| .++|+.+....+.. .......|..+-|+.. +++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34677788999999999999998 68888876443111 1122334556667643 44444433 459999999887
Q ss_pred eeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCCCEEEEEe---CCeEE
Q 003271 675 CAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 746 (835)
Q Consensus 675 ~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg~~Lasgs---Dg~I~ 746 (835)
.+..+ ...+.++.++. +.++++-.+ .|+|||+++-+.++++.. +...+.++.+++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 66554 45566666664 456665554 499999999998887764 445566777777778998754 68999
Q ss_pred EEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-EeccC--CCCeeEEEEeCCCCEE
Q 003271 747 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 822 (835)
Q Consensus 747 IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h--~~~V~~la~spdg~~L 822 (835)
|||+.+- ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.++..+ .+... ...|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999887 78888899999999999999999999999999 6899999999877 34322 3568999999999999
Q ss_pred EEEECCCcEEEeC
Q 003271 823 ASASHDKCVKIWK 835 (835)
Q Consensus 823 aSgs~DG~V~IWd 835 (835)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.6e-14 Score=165.50 Aligned_cols=220 Identities=16% Similarity=0.182 Sum_probs=158.6
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEE
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~--i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~ 622 (835)
+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ..+++|+|||+.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence 3456788889999999999999887654 3699999988754 3334333 44789999999888765 678766
Q ss_pred EE--ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeecCceEEEEecCCCEEEEEE
Q 003271 623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKSGATQMRFQPRLGRILAAA 699 (835)
Q Consensus 623 IW--Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~~i~~l~fsp~~~~ll~~s 699 (835)
|| |+.++. ...+..+...+.+..|+|+|+.+++++..++.+.||++... .....+........|+|+++.+++++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMIN 351 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEc
Confidence 65 555443 45566677778899999999988878777888888876432 21222222124577999999998887
Q ss_pred cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 700 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 700 ~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
.+ .+.+||+.++........+ ...++.|+|+|++|++++ ++.+.+|++... ....+..+..+.+.+..++|+|-
T Consensus 352 ~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 352 GD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence 75 4666999988655333222 345788999999999988 887787776431 11567777777888889999985
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=4.8e-14 Score=143.69 Aligned_cols=281 Identities=15% Similarity=0.217 Sum_probs=200.4
Q ss_pred EEEEecCCCCCEEEEEEeC--C-CCEEEEEeC----CCeEEEEEc--CCCeEEEEe-ccCCCCeEEEEECCCCC-----E
Q 003271 547 EFQLIPASTSKVESCHFSP--D-GKLLATGGH----DKKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLS-----R 611 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSp--d-g~~Lasgs~----Dg~I~VWd~--~t~~~i~~l-~~h~~~V~sv~fspdg~-----~ 611 (835)
++..+..+ -.++++.|+. + ..+||.|+. .++|.|..+ ++++.+..- ..|.-+++.+.|.|+.. +
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 34444443 3588899984 3 336888873 456666644 345544222 36889999999999753 4
Q ss_pred EEEEECCCeEEEEecCCCCcee--------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee------ee
Q 003271 612 LATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------AG 677 (835)
Q Consensus 612 Latgs~Dg~I~IWDl~t~~~~~--------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~------~~ 677 (835)
|||++ ..+|+|.+...+..+ ..-..+..++++++|+.-..+++.+++-|-++.|||++++.. +.
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 55543 479999988432111 123456789999999988888999999999999999998622 22
Q ss_pred EeecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCC-CEEEEEe--CCeEEEEEc
Q 003271 678 VFKSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSG-EYLASVS--DELVRVWSI 750 (835)
Q Consensus 678 ~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg-~~Lasgs--Dg~I~IwDl 750 (835)
.+..++..++|...+ +.|++++.||.|++||++..+....+.. ...+...++|++.. +|+++.. ...|.|.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 234569999999865 5577788999999999997654433322 24678889998854 6777766 458999999
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcE------EEeccCCCCeeEEEEeCC-CCEE
Q 003271 751 GSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT------LTLSAHDKLVSSLAASTV-NGMV 822 (835)
Q Consensus 751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~------~~l~~h~~~V~~la~spd-g~~L 822 (835)
+... ..+.++..|...|+.++|.|.. ..|++++.|..+.|||+...-. +.....++.|+.|.|++. ...|
T Consensus 274 R~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 274 RVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred cCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence 9764 6788999999999999999975 5678888888999999965322 222346788999999964 4566
Q ss_pred EEEECCCcEEE
Q 003271 823 ASASHDKCVKI 833 (835)
Q Consensus 823 aSgs~DG~V~I 833 (835)
+.+. ++++.|
T Consensus 352 ai~~-~kklei 361 (364)
T KOG0290|consen 352 AICF-GKKLEI 361 (364)
T ss_pred EEEe-cCeeeE
Confidence 6654 444433
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5e-14 Score=154.55 Aligned_cols=275 Identities=14% Similarity=0.167 Sum_probs=202.1
Q ss_pred CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271 553 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~ 631 (835)
+|....+.|..+|||+| +|+|..--.|+|||+....+...-.-....|.-.-++.|-..++.-..|.+|-+..--...+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 57777899999999998 56677788999999988766544433345566666666766666667788887664432111
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwD 708 (835)
.++ -...-..++++.-.-.+++.| ....|+-++++.|..+..+. +++.++.+++..+.|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 122334566664444455444 46789999999999887775 5588999999999999999999999999
Q ss_pred CCCCeEEEEEc------CCCC-----CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271 709 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776 (835)
Q Consensus 709 l~t~~~i~~l~------~h~~-----~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp 776 (835)
.++...+..+. .|.+ .|+++.|+.+|-.+++|+ +|.|.|||+++..+ .+..-....-+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence 99876655543 2333 499999999999999998 99999999998742 2333334456788899977
Q ss_pred CCCE-EEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 777 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 777 dg~~-L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.+.. .++......++|||-.+|+..........|+.+|+-|++.+++++-.++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6433 333344458999999999999777777889999999999999999888766543
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.6e-13 Score=157.08 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=168.7
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|++||+.+++. ..+......+..+.|+|+|+
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 37899998765443 34456678999999999999887653 35799999987652 33333344456789999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeE
Q 003271 654 DLLCSCDNNS--EIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 726 (835)
Q Consensus 654 ~ll~sgs~Dg--~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~ 726 (835)
.++++.+.+| .|++||+.+++...... ..+....|+|+++.|+.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766565 59999999887655443 346788999999999887764 3 4666677766543 3333444566
Q ss_pred EEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCc
Q 003271 727 SVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 799 (835)
Q Consensus 727 sl~fspdg~~Lasgs--D--g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~ 799 (835)
+.+|+|||++|+..+ + ..|++||+.++. ...+.. ........|+|||++|+.++.++ .+++++++...
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999998766 3 368899998763 222222 12334678999999999999876 47888987777
Q ss_pred EEEeccCCCCeeEEEEeC
Q 003271 800 TLTLSAHDKLVSSLAAST 817 (835)
Q Consensus 800 ~~~l~~h~~~V~~la~sp 817 (835)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777888889999999987
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=9.7e-16 Score=164.30 Aligned_cols=260 Identities=16% Similarity=0.258 Sum_probs=209.0
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~ 637 (835)
-+.+.|+.+|++|+.|+..|.|-.+|..++++...+. -...|.++.|..+..+||++ ....++|||-..- .++++.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeehh
Confidence 4568999999999999999999999999999988885 34679999999888888877 4568999997642 367776
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVC 714 (835)
Q Consensus 638 ~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~ 714 (835)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+. +.+..++-+|-+..+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 55 56899999998 6789999999999999999999987765 4477788899988888999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 715 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 715 i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
+..+..|.++|.+|++.++|+|+++.+ |..|+|||++.. ..++++.. ......+++|..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 999889999999999999999999999 999999999987 44455444 4566778888776 5666666789999
Q ss_pred E-cCCCc--E-EEecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003271 794 N-MTENK--T-LTLSA--HDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 794 D-l~~~~--~-~~l~~--h~~~V~~la~spdg~~LaSgs~DG 829 (835)
. .-.+. . ..... ..+.|.++.|.|-...|-.|-..|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 33211 1 11222 245889999988766665554443
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.6e-13 Score=157.89 Aligned_cols=273 Identities=21% Similarity=0.227 Sum_probs=195.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC---CEEEEEECCCeEEEEecCCCCceeE
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg---~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
-..-.||+|+++++... +..|.||.+.++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+.. ++
T Consensus 19 ~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lk 96 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LK 96 (792)
T ss_pred ecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EE
Confidence 33456999999888776 5789999999999999999999999999998864 4788999999999999998764 55
Q ss_pred EeecCCCCeEEEEEcCC---CCcEEEEEeCCC------------cEEEEECCCCeee-eEe-ecC--ceEEEEecCCCEE
Q 003271 635 TFTGHSTTVMSLDFHPS---KEDLLCSCDNNS------------EIRYWSINNGSCA-GVF-KSG--ATQMRFQPRLGRI 695 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~---g~~ll~sgs~Dg------------~I~iwDl~s~~~~-~~~-~~~--i~~l~fsp~~~~l 695 (835)
++..+ .+|..+.+.|. ....+..+..|. .++-+.+.+.... ..+ +.. ..++.+++.+. +
T Consensus 97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge-~ 174 (792)
T KOG1963|consen 97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE-F 174 (792)
T ss_pred EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce-E
Confidence 55433 34444444221 011111121121 1111211111000 000 011 35566666644 4
Q ss_pred EEEEcCCcEEEEECCCCeEEEE----EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC-CCCcceEEEeecCCCce
Q 003271 696 LAAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKF 769 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~~~i~~----l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t-~~~~~~i~~l~~~~~~V 769 (835)
.....+..+.+|+..+...... -..|...++|++++|++++++++. ||.|.+|.--. .........+.-|...|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 4555567788888877541111 123667789999999999999999 99999996443 22334556677789999
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.+++|+++|.+|++|+.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 99999999999999999999999999999977778888999999999999999999999988763
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.62 E-value=7.2e-16 Score=174.46 Aligned_cols=271 Identities=19% Similarity=0.225 Sum_probs=204.7
Q ss_pred CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003271 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (835)
Q Consensus 499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~ 578 (835)
...++...+++.+|+.|..+++|-.. +..+....+||.+.|+.++.+.+..++++++.|..
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~e-------------------t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSME-------------------TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred eeeeccccceEeecCccceeeeeecc-------------------chhhhccCCCCccccchhccchhhhhhhhcccCce
Confidence 45577788999999999999999322 22345677899999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC-CCC-ceeEEee-cCCCCeEEEEEcCCCCcE
Q 003271 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-YSLRTFT-GHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~-t~~-~~~~~~~-~h~~~V~sl~fsp~g~~l 655 (835)
|+||.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+ ... ++-+... ....-+.++-|...+. -
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~ 330 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-R 330 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-c
Confidence 9999999999999999999999999999974 67889999999987 111 0001111 1224466666766655 4
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecC-CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 003271 656 LCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 734 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg 734 (835)
+.+++.|+.-..|.+....+.... ..-+.++.+ ..+.+++-.+-.+.+|++.++...+.+.+|...+..+.++|-+
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred cccccCCcccccchhhHhhhhccc---eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 569999999888877543221110 000111111 1345556667889999999999999999999999999999977
Q ss_pred CEEEE-Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 735 EYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 735 ~~Las-gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
..++- .+ ||...|||+-.+. .+..+......+...+|+++|..++....-|.++|.....++
T Consensus 408 ~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred cHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 66654 33 9999999998884 333333446788899999999999999999999999876554
No 203
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.62 E-value=4.3e-14 Score=143.82 Aligned_cols=246 Identities=17% Similarity=0.288 Sum_probs=181.2
Q ss_pred EEEecCCCCCEEEEEEeC-CCCEEEEEeCC-------CeEEEEEcCC---------CeEEEEec-cCCCCeEEEEECCCC
Q 003271 548 FQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSL 609 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSp-dg~~Lasgs~D-------g~I~VWd~~t---------~~~i~~l~-~h~~~V~sv~fspdg 609 (835)
-+++..|.+.|+.++-+| |.++|+++..+ ..+.||.+.. .+++..+. .+-+.|.||.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 345678999999999999 45566666542 3578998753 33444443 456689999999999
Q ss_pred CEEEEEECCCeEEEEecCCCCceeEEe-----ecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEeec-
Q 003271 610 SRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS- 681 (835)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~-----~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~- 681 (835)
..|++-. |..|.+|++.........+ .++....++-+|+| +++ .+++ ..|+++..||+++.++...+..
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t-t~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT-TSDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE-eCCCcEEEEEccchhhhcchhhh
Confidence 9888775 8889999998776533222 23456678889998 444 3333 3489999999999887776652
Q ss_pred C---ceEEEEecCCCEE-EEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCC
Q 003271 682 G---ATQMRFQPRLGRI-LAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 682 ~---i~~l~fsp~~~~l-l~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~ 754 (835)
+ +..+.|+|+..++ ++++.||.|+|||.+. ..++..+.+|...|.+|.|+|.. .+|++++ |..|.+|...+-.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 2 7888999997665 4566789999999985 57788999999999999999965 4555665 9999999754321
Q ss_pred ---------------------C-----cceEEEeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEEcC
Q 003271 755 ---------------------K-----GECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMT 796 (835)
Q Consensus 755 ---------------------~-----~~~i~~l~~~~~~V~sv~fspdg~~L~s-gs~dg~I~IwDl~ 796 (835)
+ ...+.++..|...|++++|+.-.+++++ -+.||.|.|=.+.
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 1134467789999999999998887654 5778888776554
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.8e-13 Score=143.18 Aligned_cols=275 Identities=15% Similarity=0.246 Sum_probs=190.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCc--
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 631 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~-- 631 (835)
-.+..++|++.-..+|++..|-.|++||-.. ++...++. ....|+|++|.|. ++.|++|+..| |+||..+....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4578899999766789999999999999776 44445543 3457999999996 45677777655 99998753221
Q ss_pred -----------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEE
Q 003271 632 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILA 697 (835)
Q Consensus 632 -----------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~ 697 (835)
.+....+| .+|+++.|.+||..++-+.-.|..|.|||..++.++.... ++++-+.|+|++.++++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 12233445 6899999999988666555568899999999988765542 55888999999999999
Q ss_pred EEcCCcEEEEE-CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc------------ceEEEee-
Q 003271 698 AAIENYISILD-VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG------------ECIHELS- 763 (835)
Q Consensus 698 ~s~dg~I~IwD-l~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~------------~~i~~l~- 763 (835)
++.|+..++|. .++.....-..+ .+.|...+|+|+|++|.....+.-++|.+....+. ..+..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 99999999994 444544444443 45899999999999988887666666665432110 0111111
Q ss_pred ----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEEcCCCcEEEec--c--CCCCeeEEEEeC---CCC
Q 003271 764 ----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VNG 820 (835)
Q Consensus 764 ----~----~~~~V~sv~fspdg~~L~sgs~dg--------~I~IwDl~~~~~~~l~--~--h~~~V~~la~sp---dg~ 820 (835)
. -.+.+.+++|.|.|.+|++.-..+ .|.+||....-.+.+. + .......|+|+| ++.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 1 146788999999999999986654 4777887766555332 1 111244556665 344
Q ss_pred EEEEEECCCcEEEe
Q 003271 821 MVASASHDKCVKIW 834 (835)
Q Consensus 821 ~LaSgs~DG~V~IW 834 (835)
+|..+=..|.|.-|
T Consensus 415 lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRY 428 (445)
T ss_pred EEEEEeccCceEee
Confidence 55555556665543
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=8.3e-14 Score=161.45 Aligned_cols=283 Identities=14% Similarity=0.209 Sum_probs=195.2
Q ss_pred ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCC
Q 003271 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDK 577 (835)
Q Consensus 500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg 577 (835)
..+...+..+++......|.+|..... ..+..+..-......|+.+.+-. |..+|++|+.||
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~----------------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKG----------------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccC----------------ceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence 344555667777666677777744333 22222222223445689998866 556899999999
Q ss_pred eEEEEEc-----CCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271 578 KAVLWCT-----ESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (835)
Q Consensus 578 ~I~VWd~-----~t~~~i~~l~~-------h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s 645 (835)
.|+||+- ++.+.+..+.+ ..+.=.-+.|.....+|++++.-..|+|||......+.....+....|++
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence 9999963 22344433321 11111345677766677777778899999999876655555666677888
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEee---c--CceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEE-
Q 003271 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK---S--GATQMRFQPRL-GRILAAAIENYISILDVETQVCR- 715 (835)
Q Consensus 646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~---~--~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i- 715 (835)
+.-+-....++++|-.||.|++||.+.... +...+ . +|..+.+.+.| +.+++|+.+|.|++||++.....
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 877766667999999999999999986432 22222 2 27788888865 45999999999999999974221
Q ss_pred -EEEcCC---CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEE----eecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 716 -LKLQGH---KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 716 -~~l~~h---~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~----l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
..+..| .+.++++..++...++++|+.+.|+||++..... ..+.. +....+.+.+++|||....+++|..|
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence 222222 2358999999999999999999999999875421 11111 11123567999999999999999999
Q ss_pred CeEEEEEcCCCc
Q 003271 788 ETLELWNMTENK 799 (835)
Q Consensus 788 g~I~IwDl~~~~ 799 (835)
..|.||......
T Consensus 1373 s~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1373 STVSIYSCEKPR 1384 (1387)
T ss_pred ceEEEeecCCcC
Confidence 999999876543
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.9e-13 Score=155.42 Aligned_cols=232 Identities=16% Similarity=0.094 Sum_probs=167.1
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
..|.+||..... ...+..+...+.+.+|+||++.|+.++.+ ..|++||+.++.. ..+..+.....++.|+|+|+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 468999986543 44555677789999999999999988753 4699999987653 33444455566889999999
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEc-CC--cEEEEECCCCeEEEEEcCCCCCeE
Q 003271 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 726 (835)
Q Consensus 654 ~ll~sgs~Dg--~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~I~ 726 (835)
.++++.+.++ .|++||+.+++....... .....+|+|++..+++++. ++ .|+++|+.++...... .+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence 8887776666 599999998875443322 2457899999999888774 34 4777788776543322 2334455
Q ss_pred EEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEcCCCc
Q 003271 727 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENK 799 (835)
Q Consensus 727 sl~fspdg~~Lasgs-D-g--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl~~~~ 799 (835)
.++|+|+|++|+..+ + + .|.+||+.++. .. .+. +......+.|+|+|++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCC---eE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998775 3 2 69999997763 22 222 22234567999999998887764 378899997766
Q ss_pred EEEeccCCCCeeEEEEeC
Q 003271 800 TLTLSAHDKLVSSLAAST 817 (835)
Q Consensus 800 ~~~l~~h~~~V~~la~sp 817 (835)
...+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777788888886
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=9.3e-14 Score=151.55 Aligned_cols=243 Identities=15% Similarity=0.181 Sum_probs=164.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE----EEEeccCCCCeEEEEE-----CCCCCEEEEEECCCeEEEEecC
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRF-----SPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----i~~l~~h~~~V~sv~f-----spdg~~Latgs~Dg~I~IWDl~ 627 (835)
.+....++-.|++|+..-. ..+++|+...+.. +....-.....+|-+| .+++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 4555666667777765432 4688888764321 1111111122334444 2456678888888999998876
Q ss_pred CCCcee---EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce--EEEEecCCCEEEEEEcCC
Q 003271 628 NPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT--QMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 628 t~~~~~---~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~--~l~fsp~~~~ll~~s~dg 702 (835)
..+... ....-....|+|+.|.|.++.+++..-.+|.+++||..- ..+.+ +....+++..+.+...-+
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeeec
Confidence 532211 111123478999999999888999999999999999831 11211 222233444443332211
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
. .+..++..+.--...|..++|+|||++|++.+ ||.++|||+.+. +.+...+.--+...||+|+|||++|
T Consensus 277 k------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 277 K------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred c------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccEE
Confidence 1 11133333333455899999999999999999 999999999886 4454555556789999999999999
Q ss_pred EEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEe
Q 003271 782 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 816 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~s 816 (835)
++|+.|.-|.||.+.+.+++ .-.+|.++|..++|.
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999999999999998 667999999999998
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3e-14 Score=152.25 Aligned_cols=192 Identities=22% Similarity=0.242 Sum_probs=152.0
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe--
Q 003271 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-- 636 (835)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~-- 636 (835)
.+++|+.+|..|++|+.||++|||+......+.....|...|.++.|+|||++|++.+.| ..+||++.++.. +...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 789999999999999999999999988888888888899999999999999999999999 899999998843 3222
Q ss_pred ecCCCCeEEEEEcCCC---Cc-EEEEEeCCCcEEEEECCCCee---ee---Ee--ecCceEEEEecCCCEEEEEEcCCcE
Q 003271 637 TGHSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGSC---AG---VF--KSGATQMRFQPRLGRILAAAIENYI 704 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g---~~-ll~sgs~Dg~I~iwDl~s~~~---~~---~~--~~~i~~l~fsp~~~~ll~~s~dg~I 704 (835)
...+..+..+.|..++ .. +++.-...+.|+.||+...+. .+ .. ...+++++++.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 2233445667777664 22 233334456677776643221 11 11 2358999999999999999999999
Q ss_pred EEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003271 705 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 752 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t 752 (835)
.|++..+-+.+..++ .|...|+.+.|+|+.+++++.+ |..+.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999988777665 4999999999999999999987 88888887654
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.3e-13 Score=151.73 Aligned_cols=231 Identities=13% Similarity=0.145 Sum_probs=167.6
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
..|.+||.+.. ....+..|...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+...+.+.+|+|+|+
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 47888998554 44556678889999999999999888764 46899999987653 44555667788999999999
Q ss_pred cEEEEEeCCCc--EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeE
Q 003271 654 DLLCSCDNNSE--IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVH 726 (835)
Q Consensus 654 ~ll~sgs~Dg~--I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~ 726 (835)
.++++.+.++. |++||+.++....... .......|+|++..++..+.. ..|+++|+..+.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776665 8888998876654333 225668999999998887743 368888987765543 333455667
Q ss_pred EEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEEcC
Q 003271 727 SVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 796 (835)
Q Consensus 727 sl~fspdg~~Lasgs-D---g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d------g~I~IwDl~ 796 (835)
...|+|+|++|+... + ..|.+||+..+. ...+.. ...+..+.|+|+|+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 268888875542 222222 2346778999999998876653 268888988
Q ss_pred CCcEEEeccCCCCeeEEEEeC
Q 003271 797 ENKTLTLSAHDKLVSSLAAST 817 (835)
Q Consensus 797 ~~~~~~l~~h~~~V~~la~sp 817 (835)
++....+. ..+.+...+|+|
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSP 432 (435)
T ss_pred CCceEEcc-CCCCccCcccCC
Confidence 77665544 355677788876
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=3.3e-12 Score=132.19 Aligned_cols=266 Identities=15% Similarity=0.209 Sum_probs=177.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EECC------CeEEEEecCCC
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD------RTVRVWDTENP 629 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat-gs~D------g~I~IWDl~t~ 629 (835)
...+++|+.|...+++|..+| .+||+++..+.......+.+.+.-+..--..++|+. |+.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 355699999998998887654 899999876554333333333222222223345544 3332 4799999443
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEeec-----CceEEEEecCCCEEEE-EEcCC
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKS-----GATQMRFQPRLGRILA-AAIEN 702 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~~~~~~-----~i~~l~fsp~~~~ll~-~s~dg 702 (835)
+.++..+. ...+|.+|.+.++ .+++.- .+.|++|... +.+.++.+.. +..+++-......|+. |..-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 33344444 5678999999976 344333 7899999987 4555555542 2223332222233333 23459
Q ss_pred cEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecC--CCceEEEEEeC
Q 003271 703 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHP 776 (835)
Q Consensus 703 ~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fsp 776 (835)
.|.|.|+...+. ...+..|.+.|.|++.+-+|..||+++ .| .|||||..++ ..+.++... ...|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987655 467788999999999999999999999 66 7999999998 666666543 45799999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCc---E-----------E-E----------eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 777 TFPSLLVIGCYETLELWNMTENK---T-----------L-T----------LSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~---~-----------~-~----------l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
+..+|++++..|+|.||.++... . + + +.-..+...-++|..+...++..+.||..
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 99999999999999999886522 1 0 0 11113344556676665566666777764
Q ss_pred E
Q 003271 832 K 832 (835)
Q Consensus 832 ~ 832 (835)
+
T Consensus 317 ~ 317 (346)
T KOG2111|consen 317 Y 317 (346)
T ss_pred E
Confidence 3
No 211
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=6.8e-13 Score=137.20 Aligned_cols=269 Identities=14% Similarity=0.192 Sum_probs=199.8
Q ss_pred CCEEEEEEeCCCCEEEE-EeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEecCCCCcee
Q 003271 556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Las-gs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
+.|.-+.|..|..++++ ...|+.|.+|++.-.+-...+......+.+++|+|||+. |.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 45778899988877655 467889999999988888889888899999999999965 5566779999999999866433
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeC-----------------------------------CCcEEEEECCCCeee--
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCA-- 676 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~-----------------------------------Dg~I~iwDl~s~~~~-- 676 (835)
.... +..+..++|+|+|....+..-. +..+.+||.--.-.+
T Consensus 129 ~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 LPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred eccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 2222 3456888899998744332211 223445554322221
Q ss_pred eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE--------------------------------------
Q 003271 677 GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-------------------------------------- 718 (835)
Q Consensus 677 ~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l-------------------------------------- 718 (835)
.....++..+.|+|.+..+++|+.|+.++|.+--+.+....+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 222356888999999999999999998887654322211100
Q ss_pred ----------------------c------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEEcCCCCCcceEEEeecCCC
Q 003271 719 ----------------------Q------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 719 ----------------------~------~h~~~I~sl~fspdg~~LasgsDg---~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
+ ...-.+.-++|++|..|+++-.|. .+-+||+... .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 0 011235568999999999998754 8999999875 3334444577
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~ 830 (835)
+|....|+|..+.|+++.....+++|......++......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988888877777789999999999999999998864
No 212
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=1.7e-13 Score=141.68 Aligned_cols=271 Identities=15% Similarity=0.224 Sum_probs=193.5
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEeec
Q 003271 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~~ 638 (835)
-++|||+|+++|+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++ ....|+.|.+|++...+. ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 37899999999999854 888888888766544432 35677888988876655 456688999999998776 455566
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--EeecCceEEEEecCCCEEEEEEcCC--------------
Q 003271 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKSGATQMRFQPRLGRILAAAIEN-------------- 702 (835)
Q Consensus 639 h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~~~i~~l~fsp~~~~ll~~s~dg-------------- 702 (835)
....+.+++|+|+|++++.+...+-.|.+|.+.+.+... --+..+..++|+++|.+.+.++.-.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 678899999999999999999999999999998876643 2345577788888887766654321
Q ss_pred ----------------------cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----
Q 003271 703 ----------------------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---- 755 (835)
Q Consensus 703 ----------------------~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~---- 755 (835)
.+.+||.--.-.+..+. -.-.+..+.|+|.+++|+.|+ |+.++|.+--+-+.
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 13333322111111121 235688899999999999999 98888865321100
Q ss_pred -------------------------------------------c----------ceEEEee------cCCCceEEEEEeC
Q 003271 756 -------------------------------------------G----------ECIHELS------CTGNKFHSCVFHP 776 (835)
Q Consensus 756 -------------------------------------------~----------~~i~~l~------~~~~~V~sv~fsp 776 (835)
. ..++.++ ...-.+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 0000111 1123456789999
Q ss_pred CCCEEEEEEcC--CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 777 TFPSLLVIGCY--ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 777 dg~~L~sgs~d--g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
|..++++-.+. +.+.+||+...++..+.....+|....|+|....|+.+....++++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99877776554 48999999998887666667789999999988888888777788888
No 213
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=4.5e-11 Score=133.14 Aligned_cols=260 Identities=12% Similarity=0.138 Sum_probs=180.9
Q ss_pred CCEEEEEEeCCCCEEEEEeC----CCeEEEEEcCCC--e--EEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEec
Q 003271 556 SKVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~----Dg~I~VWd~~t~--~--~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl 626 (835)
.....++++|++++|+++.. ++.|..|++... + .+............++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34667899999999999876 578999987653 3 33444434455678999999999999986 899999999
Q ss_pred CCCCceeEE--ee-----------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eee--Eee----cCceE
Q 003271 627 ENPDYSLRT--FT-----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG--VFK----SGATQ 685 (835)
Q Consensus 627 ~t~~~~~~~--~~-----------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~--~~~--~~~----~~i~~ 685 (835)
......... .. .......++.|+|+++.++++.-....|++|++.... ... .+. .+...
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 875322221 11 1235578999999999888777667789999997654 322 222 34788
Q ss_pred EEEecCCCEEEEEEc-CCcEEEEECC--CCe--EEEEEcC------CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003271 686 MRFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS 752 (835)
Q Consensus 686 l~fsp~~~~ll~~s~-dg~I~IwDl~--t~~--~i~~l~~------h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t 752 (835)
++|+|+++++++... ++.|.+|++. ++. .+..+.. .......|+++|||++|+++. ++.|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 999999999888776 5789999888 442 2222221 122578899999999999887 77999999943
Q ss_pred -CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEc--CCCcEEEec--cCCCCeeEEEE
Q 003271 753 -GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 815 (835)
Q Consensus 753 -~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl--~~~~~~~l~--~h~~~V~~la~ 815 (835)
......+..+...+.....++++|+|++|+++..+ +.|.+|++ .++.+.... ..-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 23345666666666778999999999999998865 58888876 566655322 23345566665
No 214
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.56 E-value=2e-13 Score=150.60 Aligned_cols=235 Identities=15% Similarity=0.237 Sum_probs=168.5
Q ss_pred eCCCCEEEE--EeCCCeEEEEEcCC-CeEE----EEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCc----
Q 003271 564 SPDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY---- 631 (835)
Q Consensus 564 Spdg~~Las--gs~Dg~I~VWd~~t-~~~i----~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~---- 631 (835)
+.+.+++|+ .+..|.|-||++.. |++- -.+ .....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 334555554 45578999999864 2221 122 1345799999999 678999999999999999976542
Q ss_pred --eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEE
Q 003271 632 --SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 632 --~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
+...+..|...|+++.|+|-...++++++.|-+|++||+.+.+....+.+ .|..++|+|+|..+++.+.||.|++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 34678899999999999998888999999999999999999887766654 4999999999999999999999999
Q ss_pred EECCCCe-EEEEEcCC-CCCeEEEEEcCCCCEEEEEe-CC----eEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCC
Q 003271 707 LDVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTF 778 (835)
Q Consensus 707 wDl~t~~-~i~~l~~h-~~~I~sl~fspdg~~Lasgs-Dg----~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg 778 (835)
|..++.+ .++.-.+. ...--.|.|.-+|+++++.+ |. .|.+||..+-.. ..+.+... ....+.--.+.+|.
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCC
Confidence 9998764 34333321 12334678888999988876 54 788998766431 12222111 11112222455565
Q ss_pred CEE-EEEEcCCeEEEEEcCCCcE
Q 003271 779 PSL-LVIGCYETLELWNMTENKT 800 (835)
Q Consensus 779 ~~L-~sgs~dg~I~IwDl~~~~~ 800 (835)
..| ++|-.|..|++|.+-....
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCc
Confidence 544 4555677999999865543
No 215
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=5.5e-13 Score=141.58 Aligned_cols=290 Identities=13% Similarity=0.119 Sum_probs=188.9
Q ss_pred EecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC
Q 003271 487 FGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD 566 (835)
Q Consensus 487 ~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd 566 (835)
.+.-+.+..++....+.+...++++|+.++.+-+|...+.... ..+.........+...+.+.+|...|+.++|++|
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 3333445566666777777789999999999999955542111 0011111123446778889999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC-eEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMS 645 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~-V~s 645 (835)
+.++++++.|..+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+++.+..... ...|... ...
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~m~~ 210 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDIMPA 210 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeEeee
Confidence 99999999999999999999999999999999999999999999999999998777777654331 1111100 001
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc----C-----CcEEEEECCC-CeEE
Q 003271 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI----E-----NYISILDVET-QVCR 715 (835)
Q Consensus 646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~----d-----g~I~IwDl~t-~~~i 715 (835)
..+.+. .....++|.=++. +.-...++|+|+|..+++.+. + +..++|+-.. .++.
T Consensus 211 ~~~~~~---------e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~ 275 (434)
T KOG1009|consen 211 KAFNER---------EGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA 275 (434)
T ss_pred cccCCC---------CcceeeeeecCch------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce
Confidence 111110 1112222222211 122445667777766665432 1 2234444332 2333
Q ss_pred EEEcCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 716 LKLQGHKNQVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 716 ~~l~~h~~~I~sl~fsp------------------dg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
..+.....++..+.|+| .+..++.++.+.|+|||..+.....+ .-..|...++.++|+++
T Consensus 276 ~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~--v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 276 ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAV--VDNIHYSAITDIAWSDD 353 (434)
T ss_pred eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEE--EeeeeeeeecceeecCC
Confidence 44444444444444433 34456666788999999988643223 33457889999999999
Q ss_pred CCEEEEEEcCCeEEEEEcCCCcE
Q 003271 778 FPSLLVIGCYETLELWNMTENKT 800 (835)
Q Consensus 778 g~~L~sgs~dg~I~IwDl~~~~~ 800 (835)
|.+|++.+.||...+..++..++
T Consensus 354 g~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 354 GSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred CcEEEEeccCCceEEEEEcchhc
Confidence 99999999999777666655543
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3e-13 Score=143.10 Aligned_cols=259 Identities=15% Similarity=0.210 Sum_probs=199.1
Q ss_pred CCCCEEEEEEeCCCC--EEEEEeCCCeEEEEEcCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 554 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 554 H~~~V~sl~fSpdg~--~Lasgs~Dg~I~VWd~~t~~~i~~l------~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
....|++++|.-|++ .|...+.|..+..+++....+...+ ......|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345688888877665 3444446777777777766554332 3455667766664 33788889999999999
Q ss_pred cCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEee------------cCceEEEE
Q 003271 626 TENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFK------------SGATQMRF 688 (835)
Q Consensus 626 l~t~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--g~I~iwDl~s~~~~~~~~------------~~i~~l~f 688 (835)
+..+.. .+..+..+ ..+..+.-++...+++++|+.. ..+.+||++..+.+..-+ .-++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 985441 12333323 5677788888888899999998 899999999886554332 22667888
Q ss_pred ecC--CCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE-ee
Q 003271 689 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LS 763 (835)
Q Consensus 689 sp~--~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~-l~ 763 (835)
-+. ...|++++.-+.|++||.+.+ +++..|.-...+|+++...|++++|+++. -+.+..||++.+ +.+.. +.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k 287 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK 287 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence 887 788999999999999999976 67778877889999999999999999999 899999999998 44433 77
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCC
Q 003271 764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 818 (835)
Q Consensus 764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spd 818 (835)
+..+.|.++..+|.+++|++++-|..|+|+|+.+.+++........+++|-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7889999999999999999999999999999999777644444556777776543
No 217
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.55 E-value=6.8e-14 Score=152.12 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=162.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEE
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~ 647 (835)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-.|+|||.-|+|+++||.|++|.-.. ....++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4678888899999987 46778888999999999999999999999999999999998653 22344555667899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC
Q 003271 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 724 (835)
Q Consensus 648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~ 724 (835)
|.|+.+.++++.+ +.+.|=.+.....+...+ +-+.++.|++..+.+++|+.|-..+|||.. |..+..-..|..+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988887664 456555555444443333 348899999999999999999999999986 5666666779999
Q ss_pred eEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 725 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 725 I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
|++++|.|+ +.++.++-+++++=. ...+.|..++|++||..+++|+..|.|.+=
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 666667666666222 134678899999999999999999865543
No 218
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=149.57 Aligned_cols=233 Identities=14% Similarity=0.057 Sum_probs=158.4
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++.. ..+......+.+..|+|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 467777774 34444555677889999999999999887753 3599999987753 33343445667899999999
Q ss_pred cEEEEEeCCCcEEEE--ECCCCeeeeEee--cCceEEEEecCCCEEEEEEc-CCcEEEE--ECCCCeEEEEEcCCCCCeE
Q 003271 654 DLLCSCDNNSEIRYW--SINNGSCAGVFK--SGATQMRFQPRLGRILAAAI-ENYISIL--DVETQVCRLKLQGHKNQVH 726 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iw--Dl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~Iw--Dl~t~~~i~~l~~h~~~I~ 726 (835)
.++++.+.++...+| |+..+....... .......|+|++..++..+. ++...|| ++.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888888878875555 455444322221 23566789999999887664 3444444 55555433222 2233345
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCc
Q 003271 727 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 799 (835)
Q Consensus 727 sl~fspdg~~Lasgs-Dg---~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~ 799 (835)
...|+|||++|+..+ ++ .|++||+.++.. ..+.. ......+.|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 678999999998776 33 699999987632 22222 22346789999999998888665 57777875544
Q ss_pred EEEeccCCCCeeEEEEeCC
Q 003271 800 TLTLSAHDKLVSSLAASTV 818 (835)
Q Consensus 800 ~~~l~~h~~~V~~la~spd 818 (835)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888899873
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=5.8e-12 Score=144.30 Aligned_cols=203 Identities=14% Similarity=0.163 Sum_probs=147.5
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeee--eEeecCceEEEEecCCCEE
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCA--GVFKSGATQMRFQPRLGRI 695 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs--~Dg~I~iwDl~s~~~~--~~~~~~i~~l~fsp~~~~l 695 (835)
.|.+||.+... .+.+..+...+.+.+|+|+|+.++++.. .+..|++||+.+++.. ..+......+.|+|++..|
T Consensus 180 ~l~~~d~dg~~--~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCC--CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 68899988544 3445556778999999999987776543 2457999999887543 3445556788999999988
Q ss_pred EEEEc-CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCc
Q 003271 696 LAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNK 768 (835)
Q Consensus 696 l~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~ 768 (835)
+.... ++ .|++||+.+++.... ..+...+....|+|||+.|+..+ ++ .|+++|+.++. ...+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ 332 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence 87643 44 599999998866544 33455678899999999988777 33 45555666542 2233334445
Q ss_pred eEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271 769 FHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830 (835)
Q Consensus 769 V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~ 830 (835)
.....|+|+|++|+..+.++ .|++||+.++....+... .......|+|||++|+.++.|+.
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 66789999999998876543 689999998887655432 23457889999999999988765
No 220
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.53 E-value=9.4e-13 Score=136.16 Aligned_cols=223 Identities=18% Similarity=0.266 Sum_probs=174.6
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-
Q 003271 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN- 671 (835)
Q Consensus 595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~- 671 (835)
....+|+|.+|++|...+|++.....|.||...... ...+++..|...|++|+|.|..+. |++|+.|..-++|...
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc-eeEccCCCCccccccCC
Confidence 345789999999999999999999999999988765 356889999999999999999764 5699999999999994
Q ss_pred CCee-----eeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE----EEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 672 NGSC-----AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 672 s~~~-----~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i----~~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
.++- +..+....+++.|+|.++.|++++....|.||-.+....- +.-+.+.+.|.++.|+|++-+|++|+
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 3332 3445677999999999999999999999999887754321 22334678899999999999999999
Q ss_pred CCeEEEEEcCC-----CC----------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--EEEec
Q 003271 742 DELVRVWSIGS-----GS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLTLS 804 (835)
Q Consensus 742 Dg~I~IwDl~t-----~~----------~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--~~~l~ 804 (835)
|+..+||..-- .. .+..+.++....+.+..+.|+|+|..|+-.+.|+.|.+-|..... +....
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 99999987421 10 112334454667889999999999999999999999999987764 22333
Q ss_pred cCCCCeeEEEEeCC
Q 003271 805 AHDKLVSSLAASTV 818 (835)
Q Consensus 805 ~h~~~V~~la~spd 818 (835)
...-+..++.|-.+
T Consensus 247 ~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 247 TAQLPLLSVSWISE 260 (361)
T ss_pred hccCCceeeEeecC
Confidence 22355666666543
No 221
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=6.3e-11 Score=131.93 Aligned_cols=265 Identities=14% Similarity=0.181 Sum_probs=182.1
Q ss_pred EEEEeCC----CeEEEEEc--CCCeEE--EEeccCCCCeEEEEECCCCCEEEEEEC----CCeEEEEecCCC--Cc-eeE
Q 003271 570 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENP--DY-SLR 634 (835)
Q Consensus 570 Lasgs~D----g~I~VWd~--~t~~~i--~~l~~h~~~V~sv~fspdg~~Latgs~----Dg~I~IWDl~t~--~~-~~~ 634 (835)
+++|+.+ +.|++|++ +++++. ..+ ........++++|++++|+++.. ++.|..|++... .. .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556655 68998887 455543 222 23345677899999999999987 479999998875 22 122
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE---e-------------ecCceEEEEecCCCEEEE
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---F-------------KSGATQMRFQPRLGRILA 697 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~---~-------------~~~i~~l~fsp~~~~ll~ 697 (835)
...........++++|+++.++++...+|.|.++++.. +..... + ..+..++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 23324456678999999998888888899999999987 443322 1 133678999999999998
Q ss_pred EEcC-CcEEEEECCCCe--E--EEEEc-CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CcceEEEeecC---
Q 003271 698 AAIE-NYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT--- 765 (835)
Q Consensus 698 ~s~d-g~I~IwDl~t~~--~--i~~l~-~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~-~~~~i~~l~~~--- 765 (835)
.... ..|.+|++.... . ...+. ......+.++|+|+++++++.. ++.|.+|++.... ....+..+...
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 8764 689999997654 2 12222 3556788999999999998887 8899999998321 22233333221
Q ss_pred ---CCceEEEEEeCCCCEEEEEEcC-CeEEEEEcC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271 766 ---GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 835 (835)
Q Consensus 766 ---~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~--~~~~~---~l~~h~~~V~~la~spdg~~LaSgs-~DG~V~IWd 835 (835)
......++++|++++|+++... +.|.+|+++ ++++. .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1257889999999999988764 589999993 34443 2333345589999999999988887 566788874
No 222
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=7.9e-13 Score=141.46 Aligned_cols=189 Identities=14% Similarity=0.102 Sum_probs=147.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC
Q 003271 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 720 (835)
Q Consensus 644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~---~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~ 720 (835)
.+++|+.+|. .+++++.||++|+|+..+...+.. ....|.++.|+|++..|++.+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6788998866 788999999999999766554433 33669999999999999999999 999999999977665552
Q ss_pred --CCCCeEEEEEcCCC---CEEEEEe---CCeEEEEEcCCCCCcc--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003271 721 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 790 (835)
Q Consensus 721 --h~~~I~sl~fspdg---~~Lasgs---Dg~I~IwDl~t~~~~~--~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I 790 (835)
....+..+.|+.|+ .++++.. .+.|+.||+....... ...........|.+++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 33456677888776 4444333 4577787776543211 222223345679999999999999999999999
Q ss_pred EEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 791 ELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 791 ~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.|++..+.+++ ....|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 99999998887 445899999999999999999998888876653
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.1e-12 Score=140.01 Aligned_cols=268 Identities=18% Similarity=0.294 Sum_probs=182.6
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-----ECC-----CeEEEEe
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWD 625 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-----s~D-----g~I~IWD 625 (835)
.++..++++++|+++|.+. +..|+|++..+.+.+.+...- .++++.|+|.+.+|.|= ..+ -.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477889999999888775 578999999888655444333 78999999999998762 112 3477999
Q ss_pred cCCCCceeEEe----------------------------------------ecCCCCeEEEEEcCCCC-cEEEE-----E
Q 003271 626 TENPDYSLRTF----------------------------------------TGHSTTVMSLDFHPSKE-DLLCS-----C 659 (835)
Q Consensus 626 l~t~~~~~~~~----------------------------------------~~h~~~V~sl~fsp~g~-~ll~s-----g 659 (835)
++++. ....+ .-|...|..+.++|... ..+++ .
T Consensus 112 vet~~-~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 112 VETGV-QRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred eccce-ehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 88732 11111 11344566666666522 22222 2
Q ss_pred eCCCcEEEEECCCCee------eeEeecCceEEEEecCCCEEEE-EEc--C---------CcEEEEECCCCeEEEEEcCC
Q 003271 660 DNNSEIRYWSINNGSC------AGVFKSGATQMRFQPRLGRILA-AAI--E---------NYISILDVETQVCRLKLQGH 721 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~~------~~~~~~~i~~l~fsp~~~~ll~-~s~--d---------g~I~IwDl~t~~~i~~l~~h 721 (835)
+.-+.|+||....... ..-|+..-..+.|++.+.-|++ ++. | ..++++++....++..+. .
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k 269 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-K 269 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-C
Confidence 3344677776652211 1123344556677777655443 222 2 358888888556666555 5
Q ss_pred CCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEc
Q 003271 722 KNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNM 795 (835)
Q Consensus 722 ~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl 795 (835)
.++|++++|+++++-++++. -..+.|||++.. .+.. ...++-+++-|+|.|++|+.+|.+ |.|.|||+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 78999999999998777765 669999998653 4444 346778899999999999999886 59999999
Q ss_pred CCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC------CCcEEEeC
Q 003271 796 TENKTLTLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 835 (835)
Q Consensus 796 ~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~------DG~V~IWd 835 (835)
.+.+++......+ -+-+.|+|||.+|+|++. |+.++||+
T Consensus 344 ~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 344 PNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred cchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 9988774433332 345789999999998874 78899995
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.3e-12 Score=145.37 Aligned_cols=220 Identities=17% Similarity=0.184 Sum_probs=150.8
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEec
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT 626 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl 626 (835)
+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34667789999999999999887643 359999999887643 333445667899999998876 5677887777765
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEe-ec-CceEEEEecCCCEEEEEEcCC
Q 003271 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVF-KS-GATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl--~s~~~~~~~-~~-~i~~l~fsp~~~~ll~~s~dg 702 (835)
+........+..+...+....|+|+|+.+++++..++...+|.+ .+++..... .+ ......|+|+|++++..+.++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 43222245555566666778999999988877665666666654 444433222 22 244678999999998877654
Q ss_pred ---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271 703 ---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 703 ---~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs 775 (835)
.|++||+.+++...... ......+.|+|||++|+..+ .+ .+++.++. + .....+..+.+.+...+|+
T Consensus 350 g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ws 423 (427)
T PRK02889 350 GAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSWG 423 (427)
T ss_pred CcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCccC
Confidence 59999998876543332 23446789999999988877 33 46666663 3 3344444455667777887
Q ss_pred CC
Q 003271 776 PT 777 (835)
Q Consensus 776 pd 777 (835)
|-
T Consensus 424 p~ 425 (427)
T PRK02889 424 PF 425 (427)
T ss_pred CC
Confidence 64
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=6.5e-12 Score=130.02 Aligned_cols=229 Identities=13% Similarity=0.178 Sum_probs=166.1
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECC
Q 003271 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 671 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~ 671 (835)
...+++|+.|...+++|..+| .+||+++.-+... +.+....-.+..+-|- .+.+.+.|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999998777 8999988533211 1111111222233232 23455555543 479999977
Q ss_pred CCeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEEEcC--CCCCeEEEEEcCCCCEEEEEe--CCe
Q 003271 672 NGSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL 744 (835)
Q Consensus 672 s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~--h~~~I~sl~fspdg~~Lasgs--Dg~ 744 (835)
..+++.++ ..+|..+.+.++ .++.-.++.|+||... +.+.++.+.. ....+.+++-..+..+|+.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77777655 477889988876 4455567899999987 4455555443 234455565555666777766 789
Q ss_pred EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-Eec--cCCCCeeEEEEeCCCC
Q 003271 745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 820 (835)
Q Consensus 745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~--~h~~~V~~la~spdg~ 820 (835)
|.|-|+...... .-..+..|...|.+++++-+|..|++++..| -|+|||..+++.+ .+. .....|.+|+|||+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876321 3466788999999999999999999999999 6899999999987 333 2346799999999999
Q ss_pred EEEEEECCCcEEEe
Q 003271 821 MVASASHDKCVKIW 834 (835)
Q Consensus 821 ~LaSgs~DG~V~IW 834 (835)
+||++|+-|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=3.4e-12 Score=146.58 Aligned_cols=218 Identities=19% Similarity=0.191 Sum_probs=153.7
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCC--eEEE
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV 623 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg--~I~I 623 (835)
.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+| .|++
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 344677789999999999999887643 469999998876543 333445566889999998775 445555 5999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEee-c-CceEEEEecCCCEEEEEE
Q 003271 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFK-S-GATQMRFQPRLGRILAAA 699 (835)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~--I~iwDl~s~~~~~~~~-~-~i~~l~fsp~~~~ll~~s 699 (835)
||+.++. ...+..+......++|+|+++.++++...+|. |+++|+.+++...... + .....+|+|++++++..+
T Consensus 277 ~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 277 MDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence 9998765 44555565566788999999988877766655 7777877765443322 2 244689999999998876
Q ss_pred cCC---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 700 IEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 700 ~dg---~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D-g--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
.++ .|.+||+.++... .+. +......+.|+|||++|+..+ + + .|+++++... ....+..+.+.+...
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p 428 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREP 428 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCC
Confidence 543 6999999887655 333 333455679999999888776 2 2 6777877543 334444445566677
Q ss_pred EEeC
Q 003271 773 VFHP 776 (835)
Q Consensus 773 ~fsp 776 (835)
+|+|
T Consensus 429 ~wsp 432 (433)
T PRK04922 429 AWSP 432 (433)
T ss_pred ccCC
Confidence 7776
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=2e-12 Score=141.29 Aligned_cols=167 Identities=17% Similarity=0.264 Sum_probs=129.9
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEec----cCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCC---------
Q 003271 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD--------- 630 (835)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~----~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~--------- 630 (835)
+++--|+.|-..|.|.+.|....+..+.+. -....|+||.|-|. ...++++-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567888888999998876532222121 13468999999995 4566677789999999763110
Q ss_pred ------------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEe
Q 003271 631 ------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQ 689 (835)
Q Consensus 631 ------------------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fs 689 (835)
.++..+..-.+.|..++|+|||. .|++.+.||.++|||..+.+.+..+ -++..|++|+
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 11122222345789999999987 6678889999999999988776544 4789999999
Q ss_pred cCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 003271 690 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 732 (835)
Q Consensus 690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp 732 (835)
|||++|++|++|.-|.||.+...+.+..-.+|+++|..|+|+|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999997
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=3.3e-11 Score=134.67 Aligned_cols=259 Identities=10% Similarity=0.049 Sum_probs=170.6
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 003271 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (835)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs 649 (835)
+++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceEEEc
Confidence 34556789999999999999999976555445578999999999999999999999999874 555543 3457889999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEeec----------CceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEE-EE
Q 003271 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----------GATQMRFQPRLGRILAAAIE-NYISILDVETQVCR-LK 717 (835)
Q Consensus 650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----------~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i-~~ 717 (835)
++|+++++++..++.+.++|.++.+.++.+.. .+..+..++....+++.-.| +.|.+.|......+ ..
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 99999999999999999999999998887753 24566778888877777665 88999998765332 23
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec----CCCceEEEEEeCC----------CCEE
Q 003271 718 LQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------FPSL 781 (835)
Q Consensus 718 l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~----~~~~V~sv~fspd----------g~~L 781 (835)
............|+|+++|++++. ++.|.++|..+. +.+..+.. |...+..+ .+|. +...
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence 333556788899999999988876 779999999886 33333321 22222222 2222 2233
Q ss_pred EEEEcCCeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEE----ECCCcEEEeC
Q 003271 782 LVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 835 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSg----s~DG~V~IWd 835 (835)
++.-..+.+.+||....+.+. +...... .-+..+|++++|... ...+.|.|+|
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 333333456678888888884 4444444 778889999999987 3446788775
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.48 E-value=1.3e-11 Score=140.92 Aligned_cols=230 Identities=17% Similarity=0.130 Sum_probs=160.1
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
..|.++|..... ...+..+...+.+.+|+||+++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 468888876444 34455567789999999999999887754 4799999987653 33444556677899999998
Q ss_pred cEEEEEeCCC--cEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeE
Q 003271 654 DLLCSCDNNS--EIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 726 (835)
Q Consensus 654 ~ll~sgs~Dg--~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~ 726 (835)
.++++.+.++ .|++||+.++....... .......|+|++..|++++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 59999998775443322 224467899999988877653 3 6888898877644 3333556677
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCc
Q 003271 727 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 799 (835)
Q Consensus 727 sl~fspdg~~Lasgs-Dg---~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~ 799 (835)
.+.|+|+|++|+.++ ++ .|.+||+.++. . ..+.. ........|+|++++|+.++.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~---~-~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG---E-RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCC---e-EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 78899987752 1 22222 12334568999999998887765 56777765554
Q ss_pred EEEeccCCCCeeEEEE
Q 003271 800 TLTLSAHDKLVSSLAA 815 (835)
Q Consensus 800 ~~~l~~h~~~V~~la~ 815 (835)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4445444555555555
No 230
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.47 E-value=4.7e-12 Score=149.40 Aligned_cols=249 Identities=17% Similarity=0.232 Sum_probs=172.9
Q ss_pred EEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCc
Q 003271 582 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~------~~~~~~~h~~~V~sl~fsp~g~~ 654 (835)
|+. .|..+..+..|...|..++.++.. .+|+|||.||+|+|||...-.. +..++......+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 578888999999999999988764 9999999999999999864221 12344446788999999998775
Q ss_pred EEEEEeCCCcEEEEECCCCee-------eeEee----cCc-eEEEEecC-CC-EEEEEEcCCcEEEEECCCCeEEEEEc-
Q 003271 655 LLCSCDNNSEIRYWSINNGSC-------AGVFK----SGA-TQMRFQPR-LG-RILAAAIENYISILDVETQVCRLKLQ- 719 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~~-------~~~~~----~~i-~~l~fsp~-~~-~ll~~s~dg~I~IwDl~t~~~i~~l~- 719 (835)
++ .++.||.|++.+++-.+. .+..+ +.+ ...+|... .. .++.++..+.|..||++.......++
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 54 568899999999976211 11111 112 22223222 23 56777778999999999876655444
Q ss_pred -CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-cCCCceEEEEEeCCCC---EEEEEEc--CCeEE
Q 003271 720 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFP---SLLVIGC--YETLE 791 (835)
Q Consensus 720 -~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-~~~~~V~sv~fspdg~---~L~sgs~--dg~I~ 791 (835)
...+.|++++.+|.+.+++.|+ .|.+.+||++-+ ..+..+. .+..++..+..+|..+ ..++++. .+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 2457899999999999999999 899999999987 4444433 3346677776666443 4554444 56899
Q ss_pred EEEcCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 792 LWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 792 IwDl~~~~~~~-l~~h-------------------~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|++.++.+.. +... .-.....++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 99999886542 1111 11122233334456899999999999998
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.7e-11 Score=140.83 Aligned_cols=201 Identities=13% Similarity=0.189 Sum_probs=145.9
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCeeee--EeecCceEEEEecCCCE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAG--VFKSGATQMRFQPRLGR 694 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~--Dg~I~iwDl~s~~~~~--~~~~~i~~l~fsp~~~~ 694 (835)
..|.+||.+... .+.+..|...+.+..|+|+|+.++++... +..|++||+.+++... .+.+.+...+|+|+|+.
T Consensus 182 ~~l~~~d~dg~~--~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGAN--VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCC--cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 378888886543 46677788899999999999877766543 4689999998886543 23455678899999998
Q ss_pred EEEE-EcCC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCC
Q 003271 695 ILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 695 ll~~-s~dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
++.. +.++ .|++||+.++... .+..+.....+..|+|||+.|+..+ ++ .|++||+.++. ...+.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCC
Confidence 7654 4444 4888899887654 4555666677899999999988877 33 68888876652 233333345
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 768 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
.+....|+|+|+.|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence 567789999999998877543 6889998766544332 3345778999999998876654
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.8e-11 Score=138.91 Aligned_cols=231 Identities=16% Similarity=0.055 Sum_probs=161.3
Q ss_pred eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ 654 (835)
.|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+ ..|.+||+.++.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477888875544 4455677789999999999998877654 3699999987653 333334445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeEE
Q 003271 655 LLCSCDNNS--EIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 727 (835)
Q Consensus 655 ll~sgs~Dg--~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~s 727 (835)
++++.+.++ .|++||+.+++...... .......|+|+++.++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 68889998876544332 235567899999988877653 358888888776543222 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcE
Q 003271 728 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 800 (835)
Q Consensus 728 l~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~ 800 (835)
..|+|+|++|+..+ ++ .|.+||+.++.. ..+.. ........|+|+|+.|+..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~----~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV----RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE----EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 688899887632 22221 11223568999999998877653 688888876665
Q ss_pred EEeccCCCCeeEEEEeC
Q 003271 801 LTLSAHDKLVSSLAAST 817 (835)
Q Consensus 801 ~~l~~h~~~V~~la~sp 817 (835)
..+..+.+.+...+|+|
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56656667788888876
No 233
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=7e-12 Score=130.60 Aligned_cols=276 Identities=17% Similarity=0.310 Sum_probs=187.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-----EEEEeccCC------------CCeEEEEECCCC--CEEEE
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLAT 614 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~i~~l~~h~------------~~V~sv~fspdg--~~Lat 614 (835)
..+-|.+|.|..+|.+||+|..+|.|.+|.-+... ....+..|. ..|..|+|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568999999999999999999999999643221 233333332 458899998864 46777
Q ss_pred EECCCeEEEEecCCCCce----------------------------------eEE-eecCCCCeEEEEEcCCCCcEEEEE
Q 003271 615 SSADRTVRVWDTENPDYS----------------------------------LRT-FTGHSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 615 gs~Dg~I~IWDl~t~~~~----------------------------------~~~-~~~h~~~V~sl~fsp~g~~ll~sg 659 (835)
...|.+|++|.+...... .+. -..|.-.|.+|.++.|...++ ++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence 889999999987643210 111 134777899999999977555 54
Q ss_pred eCCCcEEEEECCCCe-eeeEe--e--------cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE----EEEE-----
Q 003271 660 DNNSEIRYWSINNGS-CAGVF--K--------SGATQMRFQPRL-GRILAAAIENYISILDVETQVC----RLKL----- 718 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~-~~~~~--~--------~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~----i~~l----- 718 (835)
+|-.|.+|+++-.. +.... + .-+++..|+|.. +.++..+..|.|++.|++.... ...+
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 48899999986432 22211 1 227788899975 5566677789999999984311 1111
Q ss_pred -------cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC------------Cc---eEEEEEeC
Q 003271 719 -------QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NK---FHSCVFHP 776 (835)
Q Consensus 719 -------~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~------------~~---V~sv~fsp 776 (835)
.+--..|..+.|+++|+|+++-.--+|++||+.... +.+.++..|. .. -..|+|+.
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 112246788999999999998887899999996543 3333433332 11 25688999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE--Ee--------------------ccC-------------CCCeeEEEEeCCCCE
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL--TL--------------------SAH-------------DKLVSSLAASTVNGM 821 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~--~l--------------------~~h-------------~~~V~~la~spdg~~ 821 (835)
++.++++|+..+.+++|++..|... ++ .+. ...|...+|+|..+.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence 9999999999999999996544321 00 000 112456689999888
Q ss_pred EEEEECCCcEEEe
Q 003271 822 VASASHDKCVKIW 834 (835)
Q Consensus 822 LaSgs~DG~V~IW 834 (835)
||.+... .++||
T Consensus 420 ia~aatn-nlyif 431 (433)
T KOG1354|consen 420 IAVAATN-NLYIF 431 (433)
T ss_pred eeeeecC-ceEEe
Confidence 8887655 45554
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=1.3e-13 Score=148.30 Aligned_cols=227 Identities=15% Similarity=0.188 Sum_probs=185.1
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~ 677 (835)
-.-+.+.|+.+|++|+.|+..|.|..+|..+... ..-..-...|.++.|..+.. +|+++ ....++|||-. |..++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDNN-GTELH 204 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchH-HHHhh-hhceEEEecCC-CcEEe
Confidence 3456789999999999999999999999998764 33333456788999987644 45444 47789999976 66666
Q ss_pred Eee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271 678 VFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 678 ~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~ 754 (835)
+++ ..+..+.|-|..-.|++++..|.+...|+.+|+.+..+....+.+..++-+|-+-.+-+|. .|+|.+|.....
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk- 283 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK- 283 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-
Confidence 666 4588899999877788888889999999999999999888888999999999999898888 999999998877
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
+.+..+-+|.++|.++++.++|.|+++++.|..|+|||++.-..+ ++.. ......++||..| +++++....|.|
T Consensus 284 --ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 --EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred --chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 677778899999999999999999999999999999999887654 3332 4567788888666 444555567999
Q ss_pred eC
Q 003271 834 WK 835 (835)
Q Consensus 834 Wd 835 (835)
|.
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 84
No 235
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=5e-12 Score=133.98 Aligned_cols=234 Identities=16% Similarity=0.180 Sum_probs=177.7
Q ss_pred CCCeEEEEECCCC--CEEEEEECCCeEEEEecCCCCcee-----EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271 597 TQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (835)
Q Consensus 597 ~~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t~~~~~-----~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD 669 (835)
...|..++|.-++ ..|+..+.|..+..+.+......- ........+|..+..... .|++|..+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg---~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG---TLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC---EEEEEecCCcEEEEe
Confidence 3467777776553 345555466667777766544311 133445566777766532 566888899999999
Q ss_pred CCCCe-----eeeEe-ecCceEEEEecCCCEEEE-EEcC--CcEEEEECCCCeEEEEEcCC---------CCCeEEEEEc
Q 003271 670 INNGS-----CAGVF-KSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCWN 731 (835)
Q Consensus 670 l~s~~-----~~~~~-~~~i~~l~fsp~~~~ll~-~s~d--g~I~IwDl~t~~~i~~l~~h---------~~~I~sl~fs 731 (835)
.+.+. .+..- ..+...+.-++...+|++ |+.. +.+.|||++..+.+..-+.- .-+++++.|-
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 98433 22221 234666777776666665 7777 88999999988766654432 2356788888
Q ss_pred CC--CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccC
Q 003271 732 TS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAH 806 (835)
Q Consensus 732 pd--g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h 806 (835)
+. ...|++++ -+.|++||.+... +++..+.....++.++...|++++|+++...+.|..||++.++.. .+.+.
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 87 78888888 9999999999764 677778878899999999999999999999999999999999988 47889
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 807 DKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 807 ~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+.|++|..+|...+|++||-|..|||+|
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEee
Confidence 99999999999999999999999999997
No 236
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.44 E-value=2.8e-12 Score=129.44 Aligned_cols=262 Identities=16% Similarity=0.213 Sum_probs=177.6
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
.++..|..-+.|.+|...... ....++ .|...|+.+...|+ ..|.+-+.|+.+.+|++.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r-------------------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTER-------------------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred hhhhcccccceEEEEEeecCc-------------------cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 347789999999999544432 223344 56777899988887 467888899999999998
Q ss_pred CCeEEEEeccCCCCeEEEEECCC-----CC----EEEEEECCC-eEEEEecCCCCceeEE----eecCCCCeEEEEEcC-
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPS-----LS----RLATSSADR-TVRVWDTENPDYSLRT----FTGHSTTVMSLDFHP- 650 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspd-----g~----~Latgs~Dg-~I~IWDl~t~~~~~~~----~~~h~~~V~sl~fsp- 650 (835)
....+.. |.-.+.++-|++. ++ .++.-+... .+.+-|..... .+.. -....+.++|..+.-
T Consensus 86 ~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 86 YSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred CcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccc
Confidence 7554422 3344455555432 11 111111100 01111211110 0111 112345677777543
Q ss_pred -CCCcEEEEEeCCCcEEEEECCCCeeeeE-------------eecCceEEEEecCCCEEEEEEcCCcEEEEECCCC--eE
Q 003271 651 -SKEDLLCSCDNNSEIRYWSINNGSCAGV-------------FKSGATQMRFQPRLGRILAAAIENYISILDVETQ--VC 714 (835)
Q Consensus 651 -~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-------------~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~--~~ 714 (835)
....++++|.++|.|.+||+.++..+.. ++.++.++.|.+.-+.=+.++.+..+..|.+... .+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 2344677888999999999998743332 2345788888877666777888888888888643 21
Q ss_pred --EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271 715 --RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 791 (835)
Q Consensus 715 --i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~ 791 (835)
...+.-..-.|..+.+-||++++++++ |+.||||..++. ..+..+..|...|.+++|+|+...+++++.|..|.
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 122222345688889999999999999 999999999998 77788888999999999999999999999999999
Q ss_pred EEEc
Q 003271 792 LWNM 795 (835)
Q Consensus 792 IwDl 795 (835)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.42 E-value=1.1e-10 Score=127.42 Aligned_cols=271 Identities=17% Similarity=0.246 Sum_probs=195.2
Q ss_pred CCEEEEEEeCCCCEEEEEeCC---------------CeEEEEEcCCCeEEEEeccCCCC--eE-EEEECCCCCEEEEEEC
Q 003271 556 SKVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 617 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~D---------------g~I~VWd~~t~~~i~~l~~h~~~--V~-sv~fspdg~~Latgs~ 617 (835)
..|..+.|+|.++||.+-... ..+.|||+.++.++..+..-..+ .+ -+.|+.+.+++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 349999999999999986543 35999999999999999876665 55 68898888776655 3
Q ss_pred CCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCc-EEEE-----EeCCCcEEEEECCCCeeeeE---eecCceEEE
Q 003271 618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGV---FKSGATQMR 687 (835)
Q Consensus 618 Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~-ll~s-----gs~Dg~I~iwDl~s~~~~~~---~~~~i~~l~ 687 (835)
...++|+++ ++......+..- ...|....|+|.+++ .||. ...++.+++|.+..++.+.. ++..-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 346999997 433222222221 256888899987432 2332 35678999999987665543 446677889
Q ss_pred EecCCCEEEEEEc-----------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003271 688 FQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 753 (835)
Q Consensus 688 fsp~~~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~ 753 (835)
|.+.|+++++-.. +..++++++....+.... +..++|..++|.|.++.+++++ +-.+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence 9999998776432 356888888855444443 5688999999999988777665 779999999875
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE----
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS---- 826 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs---- 826 (835)
. .+......-+.+.|+|.++++++++.++ .|.+||......+.-.-......-+.|+||+.++.+..
T Consensus 309 ----l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 ----L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ----e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 2 2233455667789999999999988875 89999988776553222223345568999999887764
Q ss_pred --CCCcEEEeC
Q 003271 827 --HDKCVKIWK 835 (835)
Q Consensus 827 --~DG~V~IWd 835 (835)
.|..|+|||
T Consensus 383 ~~~Dn~i~l~~ 393 (561)
T COG5354 383 LRVDNSIKLWD 393 (561)
T ss_pred cccCcceEEEE
Confidence 478899996
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=7.5e-12 Score=130.55 Aligned_cols=249 Identities=17% Similarity=0.274 Sum_probs=191.9
Q ss_pred ceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-cCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCe
Q 003271 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT 620 (835)
Q Consensus 543 ~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd-~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~ 620 (835)
+.+..+..++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 33445667889999999999999888899999999999994 44555544442 24567899999999999999999999
Q ss_pred EEEEecCCC---CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEE
Q 003271 621 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRI 695 (835)
Q Consensus 621 I~IWDl~t~---~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~l 695 (835)
+.-+.+... -...+.+..|...|..+.|+-..+ .+++++.|..+.---.+.+..+..+ ....+.+.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 998876532 223567788999999999987755 5667887877765555555544332 222333333322 56
Q ss_pred EEEEcCCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 696 LAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 696 l~~s~dg~I~IwDl~--t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
++|...|.|.+..+. .-..+.++.+|...+.+++|.+....|.+|. |..|.+||+.... ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 667777777776554 4567889999999999999999999999998 9999999997653 4667788899999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 773 VFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
...+.-+.+++++.||.|.+||++
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEecc
Confidence 998888899999999999999984
No 239
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.5e-11 Score=136.91 Aligned_cols=231 Identities=15% Similarity=0.097 Sum_probs=157.0
Q ss_pred eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-C--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-g--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ 654 (835)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++. ..+...........|+|+|+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 577778765443 3455567789999999999988876543 2 588899987653 223323334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeEE
Q 003271 655 LLCSCDNNSE--IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 727 (835)
Q Consensus 655 ll~sgs~Dg~--I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~s 727 (835)
++++.+.++. |++||+.+++...... .......|+|++..++..+.. ..|+++|+.+++..... .+......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 8888988776544332 235678899999988877642 35777888877654322 12233445
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcE
Q 003271 728 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 800 (835)
Q Consensus 728 l~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~ 800 (835)
.+|+|||++|+..+ ++ .|.++|+.++.. ..+... .......|+|+|+.|+..+.++ .|++++.+....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 34 566678776631 122211 1223458999999988877654 588888865555
Q ss_pred EEeccCCCCeeEEEEeC
Q 003271 801 LTLSAHDKLVSSLAAST 817 (835)
Q Consensus 801 ~~l~~h~~~V~~la~sp 817 (835)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=140.62 Aligned_cols=279 Identities=15% Similarity=0.181 Sum_probs=211.7
Q ss_pred CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCC
Q 003271 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD 576 (835)
Q Consensus 499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~D 576 (835)
.+.+......+++||.|..|.+|.+.... .......+|...|.--.|-| +..-|++++.|
T Consensus 147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 147 TVHFNQRGDVLASGSDDLQVVVWDWVSGS------------------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred eeeecccCceeeccCccceEEeehhhccC------------------cccccccccccchhhhhccCCCCCcCceecccc
Confidence 44455566799999999999999443331 12333468998898888888 34569999999
Q ss_pred CeEEEEEcCC-CeE--EEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCce--eEEeecCCC---CeEEEE
Q 003271 577 KKAVLWCTES-FTV--KSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS--LRTFTGHST---TVMSLD 647 (835)
Q Consensus 577 g~I~VWd~~t-~~~--i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~--~~~~~~h~~---~V~sl~ 647 (835)
|.|++=.+.. +.+ ...+..|.+.|..++.-|+. ..|.+++.|+.|.-+|+...... +.....+.. ...+|+
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9999987643 322 35567799999999999974 46899999999999998865421 122223333 567899
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeee------e---------EeecCceEEEEecCCCEEEEEEcCCcEEEEECCC-
Q 003271 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCA------G---------VFKSGATQMRFQPRLGRILAAAIENYISILDVET- 711 (835)
Q Consensus 648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~------~---------~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t- 711 (835)
.+|...+.+++++.|-.+++||.+.-... . .....|++++|+.++..+++...|-.|++|.-.-
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 99998889999999999999998753211 1 1224599999999999999999999999995432
Q ss_pred -C----------eEEEE-EcCCCC--CeEEEEE-cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271 712 -Q----------VCRLK-LQGHKN--QVHSVCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 712 -~----------~~i~~-l~~h~~--~I~sl~f-spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs 775 (835)
+ ..+.. +++|.. .|.++-| -|...|+++|+ -|.|.||+-.++ +.+..+.+....|+|+.-+
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpH 445 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPH 445 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCC
Confidence 2 12223 677765 4667754 68889999999 569999999887 6777777777789999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCC
Q 003271 776 PTFPSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 776 pdg~~L~sgs~dg~I~IwDl~~~ 798 (835)
|.-+.|++++-|..|+||.-.+.
T Consensus 446 P~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 446 PHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred CCCchhhccCCccceeeecCCcc
Confidence 99999999999999999987443
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.2e-11 Score=136.10 Aligned_cols=237 Identities=15% Similarity=0.197 Sum_probs=170.0
Q ss_pred cCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCCeEEEE-EcCCCCcEEEEEeCCCcEEEEECCC
Q 003271 595 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINN 672 (835)
Q Consensus 595 ~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~-fsp~g~~ll~sgs~Dg~I~iwDl~s 672 (835)
+|....+.|..+|||.|+ +||.+.-.|+|||+.+-. +..-......|..+. .+.|-... |.--.|.+|-+...-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~-v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKS-VFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhh-eEeecCceeeehhhcC
Confidence 477888999999999985 566678899999998644 333333333444333 33332222 2333466776554332
Q ss_pred CeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271 673 GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 751 (835)
Q Consensus 673 ~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~ 751 (835)
......++.....++++.-.--|++++....|+-++++.|..+..+......+++|..++...+|++|+ +|.|.+||.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 222233344455666666556688888888999999999999988887889999999999999999999 9999999999
Q ss_pred CCCCcceEE---EeecCCC-----ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCC--CeeEEEEeCC--C
Q 003271 752 SGSKGECIH---ELSCTGN-----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK--LVSSLAASTV--N 819 (835)
Q Consensus 752 t~~~~~~i~---~l~~~~~-----~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~--~V~~la~spd--g 819 (835)
+......+. .+..+.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+.+....|.. +|..+.|.+. .
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 874322221 1122223 49999999999999999999999999999999997777754 6888888765 3
Q ss_pred CEEEEEECCCcEEEeC
Q 003271 820 GMVASASHDKCVKIWK 835 (835)
Q Consensus 820 ~~LaSgs~DG~V~IWd 835 (835)
..|+|. +...++|||
T Consensus 286 ~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWD 300 (703)
T ss_pred ceEEec-chHHhhhcc
Confidence 456654 456799997
No 242
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=6.5e-11 Score=124.27 Aligned_cols=229 Identities=17% Similarity=0.224 Sum_probs=143.7
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
.+...++| ..|+++.|.+||..|++++. |..|.|||.+++..+......-+.++-+.|+||+.+|+.+..|+..++|+
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 34455677 78999999999999999874 67899999999887765545567899999999999999999999999997
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEE-EEEcCCcE
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRIL-AAAIENYI 704 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll-~~s~dg~I 704 (835)
........+... ..+.|...+|+|+|..++++++..-.| |.+.- ......+. .++.....
T Consensus 267 e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f----------------~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 267 ENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRL--YSLTF----------------DGEDSVFLRPQSIKRVL 327 (445)
T ss_pred hcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceE--EEEee----------------cCCCccccCcccceeee
Confidence 664443333333 345899999999999999998754443 33321 11100000 11111222
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg---------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs 775 (835)
.+-|+..-....--.-..+++.+++|+|.|.||++.-.+ .|.+||.+.....+....-...+.....++|+
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~ 407 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFG 407 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEee
Confidence 233332111000001135678999999999999987622 46667766542111111001112224445555
Q ss_pred C---CCCEEEEEEcCCeEEEEEc
Q 003271 776 P---TFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 776 p---dg~~L~sgs~dg~I~IwDl 795 (835)
| ++++|.++=+.|.|.-|++
T Consensus 408 pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 408 PLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ecccCCcEEEEEeccCceEeeee
Confidence 4 4556666666666666654
No 243
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.39 E-value=2.2e-13 Score=137.53 Aligned_cols=77 Identities=32% Similarity=0.750 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhhHHHHHHHhhhhccc----ccchhhhhhh
Q 003271 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI 79 (835)
Q Consensus 4 ~~~~~~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eww~~Fwdif~a~~~~----~~s~~~~~yi 79 (835)
++-.|+++|..||||||++-|..++|+.|+.|..+..+ +.+-.+-+||.+|||||||+|+|...+ .||..+..|.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56679999999999999999999999999999887766 556677799999999999999995544 4666666655
Q ss_pred HH
Q 003271 80 ES 81 (835)
Q Consensus 80 q~ 81 (835)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 43
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=1.1e-09 Score=120.19 Aligned_cols=256 Identities=12% Similarity=0.069 Sum_probs=170.4
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC----------CCeEEEEecCCCCceeEEeecC-------
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 639 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~~~~~~~h------- 639 (835)
+.|.|.|..+++.+..+.....+- .+ ++||++.|+++.. +..|.|||+.+.+. +..+..-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998886544433 34 9999998888766 78999999999875 3333321
Q ss_pred CCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCC-CeEE-E
Q 003271 640 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVET-QVCR-L 716 (835)
Q Consensus 640 ~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i-~ 716 (835)
......++++|+|+.++++--. +..|.++|+.+++.+..+..+.....+-.....+.+.|.||......+.+ ++.. .
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 1233478899999988776644 89999999999999988875433333322223333445565555543332 2211 1
Q ss_pred E---EcCCCCCeE-EEEEcC-CCCEEEEEeCCeEEEEEcCCCCC--cceEEEeec-------CCCceEEEEEeCCCCEEE
Q 003271 717 K---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSK--GECIHELSC-------TGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 717 ~---l~~h~~~I~-sl~fsp-dg~~LasgsDg~I~IwDl~t~~~--~~~i~~l~~-------~~~~V~sv~fspdg~~L~ 782 (835)
. +.+...++. .-.|.+ +|++++....|.|.+.|+..... ...+..+.. ....+.-++++++++.++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 111001110 003345 88888888899999999755321 112222111 123334499999999999
Q ss_pred EEE----------cCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003271 783 VIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 835 (835)
Q Consensus 783 sgs----------~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~IWd 835 (835)
+.. ..+.|.++|..+++.+....-...+..|++++|++ +|++.+ .++.|.|+|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 854 22489999999999996655567899999999999 777666 577788875
No 245
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=3.7e-12 Score=139.15 Aligned_cols=164 Identities=17% Similarity=0.272 Sum_probs=128.1
Q ss_pred EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEE
Q 003271 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY 667 (835)
Q Consensus 589 ~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~i 667 (835)
....+.+|.+.|.|+.|+.+|.+|++||.|-.+.|||.-..+.....-.+|...|.++.|.|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345788999999999999999999999999999999999777656677899999999999984 5668899999999999
Q ss_pred EECCCCe----------eeeEee---cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEE-------E---EEcCCCC
Q 003271 668 WSINNGS----------CAGVFK---SGATQMRFQPRL-GRILAAAIENYISILDVETQVCR-------L---KLQGHKN 723 (835)
Q Consensus 668 wDl~s~~----------~~~~~~---~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i-------~---~l~~h~~ 723 (835)
||+...+ ....+. ..+..++..|.+ ..+.+++.||.|+-||++....- . .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9998522 222222 337778888888 77889999999999999863211 1 1111123
Q ss_pred CeEEEEEcCCC-CEEEEEe-CCeEEEEEcCC
Q 003271 724 QVHSVCWNTSG-EYLASVS-DELVRVWSIGS 752 (835)
Q Consensus 724 ~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t 752 (835)
...|+.++|.. .+|++|+ |-..++||.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 56788999865 5666676 88999999653
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=3.9e-11 Score=122.26 Aligned_cols=108 Identities=20% Similarity=0.417 Sum_probs=88.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 003271 721 HKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWN 794 (835)
Q Consensus 721 h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwD 794 (835)
..++|.+++|+|+|+.++++. +..|.+||++. ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999876653 67999999962 5555554 5678899999999999998854 5799999
Q ss_pred cCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC------CCcEEEeC
Q 003271 795 MTENKTLTLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 835 (835)
Q Consensus 795 l~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~------DG~V~IWd 835 (835)
+++.+.+....|.. ++.++|+|||++|+++.. |..++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99988887766654 789999999999998874 78889985
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=4.1e-09 Score=111.88 Aligned_cols=264 Identities=13% Similarity=0.098 Sum_probs=184.6
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCC--CeEE--EEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEE
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t--~~~i--~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IW 624 (835)
.+.+.++-++|+++.++|.++-.+ |.|..|.++. |++. ........+-+.|++++++++|+++.+ -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 455678899999999999887654 7788777764 4443 222222233478999999999999876 4799999
Q ss_pred ecCCCCcee--EEeecCCCC----------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----e--cCceEE
Q 003271 625 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----K--SGATQM 686 (835)
Q Consensus 625 Dl~t~~~~~--~~~~~h~~~----------V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~--~~i~~l 686 (835)
-+.+..... .....|.+. +.+..+.|+++++++..-.--.|.+|++..++....- + .+...+
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 986533211 123335444 8899999998866655545568999999977654322 2 458899
Q ss_pred EEecCCCEEEEEEc-CCcEEEEECCCC-eEEEEEcC---------CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003271 687 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 753 (835)
Q Consensus 687 ~fsp~~~~ll~~s~-dg~I~IwDl~t~-~~i~~l~~---------h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~ 753 (835)
.|+|++++.++.++ +++|.+|..... ..+..+.. ...+...|..++||++|+++. .+.|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999887775 799999998863 22222211 234677899999999999998 558999988765
Q ss_pred CC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEc--CCCcEEEe--ccCCCCeeEEEEe
Q 003271 754 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS 816 (835)
Q Consensus 754 ~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl--~~~~~~~l--~~h~~~V~~la~s 816 (835)
.. ...+.....++.....+.|++++++|+++..++ .|.+|.. .+|++..+ ........||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 32 334444455566688999999999999999876 6777755 45655432 2344455666664
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=5.2e-10 Score=127.94 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=157.6
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCE--E-EEEECCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~--L-atgs~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~ 651 (835)
+.|.+.|.+.+... .+......+.+-+|+|||+. + ++...+| .|.+.++.++.. ..+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 36777777665443 34445566778899999875 2 3444443 577778887653 334444555667899999
Q ss_pred CCcEEEEEeCCC----cEEEEECCCC---eeeeEee---cCceEEEEecCCCEEEEEEc-CCc--EEEEECCC-CeEEEE
Q 003271 652 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFK---SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 717 (835)
Q Consensus 652 g~~ll~sgs~Dg----~I~iwDl~s~---~~~~~~~---~~i~~l~fsp~~~~ll~~s~-dg~--I~IwDl~t-~~~i~~ 717 (835)
|+.++++.+.+| .+.+|++..+ +...... ......+|+|+|..|+..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775444 3344676653 3222232 22457899999998887764 554 55555542 233444
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003271 718 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 790 (835)
Q Consensus 718 l~~h~~~I~sl~fspdg~~Lasgs--D--g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I 790 (835)
+..+...+....|+|||+.|+..+ + ..|.+||+.++. . ..+......+....|+|+|+.|+..+.+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---D-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---e-EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 544556678899999999998776 2 379999998873 2 2233233456788999999988876543 379
Q ss_pred EEEEcCCCcEEEeccCCCCeeEEEEeCCC
Q 003271 791 ELWNMTENKTLTLSAHDKLVSSLAASTVN 819 (835)
Q Consensus 791 ~IwDl~~~~~~~l~~h~~~V~~la~spdg 819 (835)
++||+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998887666666777888898743
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.9e-10 Score=130.52 Aligned_cols=220 Identities=16% Similarity=0.161 Sum_probs=150.0
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EECCC--eEE
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 622 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat-gs~Dg--~I~ 622 (835)
+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.+| .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3344667789999999999998876643 369999998886543 3333445667899999998874 44455 688
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEee-c-CceEEEEecCCCEEEEE
Q 003271 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-S-GATQMRFQPRLGRILAA 698 (835)
Q Consensus 623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~-~-~i~~l~fsp~~~~ll~~ 698 (835)
+||+.++. ...+..+........|+|+++.++++...++ .|+++|+.+++...... . ......|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666777899999998887765554 57788888776543322 2 23456899999999887
Q ss_pred EcCC---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271 699 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 771 (835)
Q Consensus 699 s~dg---~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~s 771 (835)
..++ .|.++|+.++....... ........|+|+|+.|+..+ ++ .|+++++... ....+..+.+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 7542 58889998876543222 22233568999999998776 33 5677777433 22334344455666
Q ss_pred EEEeCC
Q 003271 772 CVFHPT 777 (835)
Q Consensus 772 v~fspd 777 (835)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 777763
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.7e-10 Score=131.21 Aligned_cols=218 Identities=18% Similarity=0.201 Sum_probs=146.1
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EECCCe--EEEE
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW 624 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat-gs~Dg~--I~IW 624 (835)
+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+.....+|+|||+.|+. .+.++. |++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 33456678899999999998876543 258899998876532 2222334457899999997765 456664 7777
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEe-ecC-ceEEEEecCCCEEEEEEc
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVF-KSG-ATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~-~~~-i~~l~fsp~~~~ll~~s~ 700 (835)
|+.++. ...+..+...+...+|+|+++.++++...++ .|+++|+.+++..... ... ....+|+|++++++..+.
T Consensus 292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence 887655 4455556566778899999998887776554 4777788777654432 222 345689999999888765
Q ss_pred C-C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 701 E-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 701 d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
+ + .|.++|+.++.... +... .......|+|+|+.|+..+ ++ .+++++... .....+..+.+.+...+
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~ 443 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPA 443 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCc
Confidence 4 3 46678888876543 2222 1223458999999888766 34 477777643 34444544555667778
Q ss_pred EeCC
Q 003271 774 FHPT 777 (835)
Q Consensus 774 fspd 777 (835)
|+|-
T Consensus 444 Wsp~ 447 (448)
T PRK04792 444 WSPF 447 (448)
T ss_pred cCCC
Confidence 8763
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=3.9e-11 Score=140.56 Aligned_cols=262 Identities=16% Similarity=0.251 Sum_probs=182.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe------ccCC--CCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l------~~h~--~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
+++++..+-. +||++|. .-.|.+||+..+..+..+ ..|. +.+. -.+.+++++..-+.+.+=+..
T Consensus 8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~ 79 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEAS 79 (967)
T ss_pred ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchh
Confidence 4455555544 4666554 457999999887765443 2341 0010 123455555544434333222
Q ss_pred CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-------EEEEecCCCEEEEEEc
Q 003271 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-------QMRFQPRLGRILAAAI 700 (835)
Q Consensus 628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-------~l~fsp~~~~ll~~s~ 700 (835)
... ...+. ..|....+..+.. .++....+..+.+||...+.....+.+.-. -+.++++.=++++|+.
T Consensus 80 ~~~--~~~~s---~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 80 NQI--IERFS---DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred hhh--hhhcc---ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence 111 12222 2233334444434 455566688999999988877665554322 2234555567888888
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271 701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~ 779 (835)
-+.|.+|+......-..+.+|.+.|.++.|+.||+++++++ |.++++|++.+.+... ...-+|...|+.++|+|+
T Consensus 154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--
Confidence 89999999884444446889999999999999999999999 8899999999984322 356689999999999999
Q ss_pred EEEEEEcCCeEEEEEcCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 780 SLLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 780 ~L~sgs~dg~I~IwDl~~~~~~~l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|++++.|-+.++|+.+...+..+..|. ..|..++..++...++|++.||.+++|+
T Consensus 230 ~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 8999999999999987666665666775 5699999999999999999999999996
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=5.7e-10 Score=127.34 Aligned_cols=203 Identities=15% Similarity=0.194 Sum_probs=145.5
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeE--eecCceEEEEecCCCE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV--FKSGATQMRFQPRLGR 694 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--g~I~iwDl~s~~~~~~--~~~~i~~l~fsp~~~~ 694 (835)
..|.++|..... .+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++.... +......++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 455666777899999999999877665433 4799999998765433 3344667899999998
Q ss_pred EEEEE-cC--CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCC
Q 003271 695 ILAAA-IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 695 ll~~s-~d--g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
|++.. .+ ..|++||+.++.... +..+........|+|+|+.|+.++ ++ .|+++|+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 87654 33 359999998775433 333445556789999999888766 33 68888887652 233444456
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271 768 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG 829 (835)
.+..+.|+|++++|+.++.++ .|++||+.++....+... ......+|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988766544433 2345678999999888777654
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.30 E-value=1.6e-10 Score=117.75 Aligned_cols=149 Identities=13% Similarity=0.295 Sum_probs=111.5
Q ss_pred EEEEECCCCCEEEEEEC----------CCeEEEEecCCCCceeEEeec-CCCCeEEEEEcCCCCcEEEE-EeCCCcEEEE
Q 003271 601 TDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYW 668 (835)
Q Consensus 601 ~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~~~~~~~-h~~~V~sl~fsp~g~~ll~s-gs~Dg~I~iw 668 (835)
..+.|+++|.+|++-.. -+...||.++........+.- ..++|.+++|+|+++.+++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788999887765433 234666666544433444432 34579999999999877544 5567899999
Q ss_pred ECCCCeeeeEee-cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---
Q 003271 669 SINNGSCAGVFK-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--- 741 (835)
Q Consensus 669 Dl~s~~~~~~~~-~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--- 741 (835)
|++ ++.+..+. .....+.|+|+|+++++++.+ |.|.+||+++.+.+..+. | ..++.++|+|+|++|+++.
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 457889999999999998754 679999999988887775 3 3478999999999999875
Q ss_pred ----CCeEEEEEcCC
Q 003271 742 ----DELVRVWSIGS 752 (835)
Q Consensus 742 ----Dg~I~IwDl~t 752 (835)
|+.++||++..
T Consensus 166 r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQG 180 (194)
T ss_pred ceeccccEEEEEecC
Confidence 56889999853
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=8.3e-10 Score=126.32 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=139.8
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc--EEEEEeCCC--cEEEEECCCCeee--eEeecCceEEEEecCC
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCA--GVFKSGATQMRFQPRL 692 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~--ll~sgs~Dg--~I~iwDl~s~~~~--~~~~~~i~~l~fsp~~ 692 (835)
..|.+.|.+... .+.+......+.+-.|+|||+. ++++...++ .|++.++..++.. ..+.+.....+|+|+|
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 357777776543 3445555566778899999976 333454443 6888899877543 3345566778999999
Q ss_pred CEEEEEEc-CC----cEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCcceEE
Q 003271 693 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIH 760 (835)
Q Consensus 693 ~~ll~~s~-dg----~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~--I~IwDl~t~~~~~~i~ 760 (835)
+.|+..+. +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++. |+++++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99887764 22 3444676642 33333332333456789999999888776 564 4444543221 2233
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-C--CcEEEe
Q 003271 761 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 834 (835)
Q Consensus 761 ~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~-D--G~V~IW 834 (835)
.+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+....|+|||+.|+.... + ..|++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 344444567788999999999887654 3799999999988766655556788999999997775443 2 345555
Q ss_pred C
Q 003271 835 K 835 (835)
Q Consensus 835 d 835 (835)
|
T Consensus 401 d 401 (428)
T PRK01029 401 S 401 (428)
T ss_pred E
Confidence 3
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=5.1e-10 Score=124.65 Aligned_cols=202 Identities=17% Similarity=0.261 Sum_probs=155.7
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEecc---CCCCeEEEEEC------C--------------CCCEEEEEECCCeE
Q 003271 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 621 (835)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~---h~~~V~sv~fs------p--------------dg~~Latgs~Dg~I 621 (835)
|-..|+|....||.++||++.+++....+.. -++..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456899999999999999999887766532 23344455542 1 33467888889999
Q ss_pred EEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEE
Q 003271 622 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILA 697 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~ 697 (835)
.+|++..++...+.. ..|.+.|.++.++.+- .+|.+++.|+.+.+|+......++.+++. +..++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999887533333 4689999999988764 47889999999999999999988888754 888999999998888
Q ss_pred EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC-----CCEEEEEe--CCeEEEEEcCCC-CCcceEEEeecCCCce
Q 003271 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKF 769 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd-----g~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~~~~~V 769 (835)
++ +.|.+||+++++.+..|.+|.++|.++.|-.+ |.++.++. +..+.+|-+... +.......+....-++
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv 239 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPV 239 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCe
Confidence 76 68999999999999999999999999999776 78888776 667888877653 2223333444434333
No 256
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=5.5e-09 Score=117.77 Aligned_cols=252 Identities=11% Similarity=0.036 Sum_probs=160.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEE-EEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe-
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV- 643 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~s-v~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V- 643 (835)
++..+++++.++.|+.+|..+++.+....... .+.+ ... .+..++.++.++.|..||..+++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~ 179 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT 179 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence 46678888899999999999999887664332 2222 112 245677788899999999998875 33222211111
Q ss_pred ----EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc----------eEEE--EecCCCEEEEEEcCCcEEEE
Q 003271 644 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA----------TQMR--FQPRLGRILAAAIENYISIL 707 (835)
Q Consensus 644 ----~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i----------~~l~--fsp~~~~ll~~s~dg~I~Iw 707 (835)
.+..+. + . .++.+..++.+..+|.++++.+....... ..+. ..-.++.+++++.++.++.|
T Consensus 180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL 256 (377)
T ss_pred ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence 111122 2 2 45677778999999999998765432110 0000 01135788889999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEE
Q 003271 708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 708 Dl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs 785 (835)
|..+++.+..... . ....... ++..|++++ +|.|..+|..++ +.+...... .....+... .+..|++++
T Consensus 257 d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~~~ 327 (377)
T TIGR03300 257 DLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVVGD 327 (377)
T ss_pred ECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEEEe
Confidence 9999988776652 1 1222222 345566666 999999999887 444333211 112222222 356899999
Q ss_pred cCCeEEEEEcCCCcEE-EeccCCCCe-eEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 786 CYETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 786 ~dg~I~IwDl~~~~~~-~l~~h~~~V-~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+|.|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|+.|.
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 9999999999999988 444444333 333333 3 3588889999998763
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=9.9e-10 Score=120.85 Aligned_cols=269 Identities=13% Similarity=0.185 Sum_probs=183.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEEcCCCeEEEEeccC--CCCeE-EEEECCCCCEEEEEECCC
Q 003271 554 STSKVESCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEH--TQWIT-DVRFSPSLSRLATSSADR 619 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~-----------Dg~I~VWd~~t~~~i~~l~~h--~~~V~-sv~fspdg~~Latgs~Dg 619 (835)
|.+ |.-+.|||..+||+|-+. ...++|||+.+|...+.+... ...++ -+.||.|++++|--..|
T Consensus 249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 444 888999999999999652 257999999999998887652 22333 46899999999877664
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEee---cCceEEEEecC
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK---SGATQMRFQPR 691 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~ 691 (835)
.|.||+..+-. .+....-.-..|....|+|.+. +|+-=. .-..+.+-.+.++..+++-. ..-..+.|..+
T Consensus 327 sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~ 404 (698)
T KOG2314|consen 327 SISIYETPSFM-LLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS 404 (698)
T ss_pred eEEEEecCcee-eecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC
Confidence 69999877522 1222222335688899999865 443221 12356666666666555433 33455678888
Q ss_pred CCEEEEEEc-------C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcC-CCCCc
Q 003271 692 LGRILAAAI-------E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKG 756 (835)
Q Consensus 692 ~~~ll~~s~-------d---g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~-t~~~~ 756 (835)
|++|++-.. . ..+.|+.++..........-...|...+|.|.|..+++-+ ..++.+|.+. +....
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence 887776432 1 2355666665443333333567889999999998877655 3489999988 44444
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEEcCCCc--EEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK--TLTLSAHDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~---dg~I~IwDl~~~~--~~~l~~h~~~V~~la~spdg~~LaSgs~DG 829 (835)
..+..+.. ...+.+.|+|.|+++++++- .|.+.+||+.-.. .+....|. ..+.+.|.|.|+|++|++.-.
T Consensus 485 ~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 485 SLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 45555543 56788999999999988754 5699999998533 33444553 457899999999999998643
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=9.7e-09 Score=109.05 Aligned_cols=258 Identities=11% Similarity=0.139 Sum_probs=181.4
Q ss_pred CCeEEEEEcCCC--eEE-EEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEe---ecCCCCeEEE
Q 003271 576 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTF---TGHSTTVMSL 646 (835)
Q Consensus 576 Dg~I~VWd~~t~--~~i-~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~---~~h~~~V~sl 646 (835)
+.-|++|++++. +.. ..+-.+.+.++-++|+|+.++|+++-.+ |.|..|.++.....+..+ .....+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998742 211 1223466778999999999999988654 778888887532212222 1122344889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE---ee------------cCceEEEEecCCCEEEEEEcC-CcEEEEEC
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK------------SGATQMRFQPRLGRILAAAIE-NYISILDV 709 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~---~~------------~~i~~l~fsp~~~~ll~~s~d-g~I~IwDl 709 (835)
+++++++.++++....|.|.++-+.. |..... +. .++....+.|+++++++.... ..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998888888889999999965 432211 11 226778899999999988764 78999999
Q ss_pred CCCeEEE----EEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCcceEEEeec------CCCceEEEEEeC
Q 003271 710 ETQVCRL----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHP 776 (835)
Q Consensus 710 ~t~~~i~----~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~------~~~~V~sv~fsp 776 (835)
..+.... .+ ......+.|.|+|++++.++.. +++|.+|.+... ...+.+..+.. .......+.+++
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 9765432 22 2456678999999999999888 999999999874 22233333322 235577889999
Q ss_pred CCCEEEEEEcC-CeEEEEEcCC--CcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC-cEEEe
Q 003271 777 TFPSLLVIGCY-ETLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 834 (835)
Q Consensus 777 dg~~L~sgs~d-g~I~IwDl~~--~~~~---~l~~h~~~V~~la~spdg~~LaSgs~DG-~V~IW 834 (835)
+|++|+++... ..|.+|.+.. +++. ....+....+.+.|++.+++|+++..|+ .|.+|
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99999888764 3788887754 3332 3334555589999999999999888654 56665
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=5.1e-08 Score=107.23 Aligned_cols=232 Identities=12% Similarity=0.144 Sum_probs=148.0
Q ss_pred EeCCCCEEEEEeC----------CCeEEEEEcCCCeEEEEeccCC-------CCeEEEEECCCCCEEEEEEC--CCeEEE
Q 003271 563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRTVRV 623 (835)
Q Consensus 563 fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~i~~l~~h~-------~~V~sv~fspdg~~Latgs~--Dg~I~I 623 (835)
+||||+.|+++.. +..|.|||+.+++.+..+.... .....++++|||++|++... +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877655 7899999999999998886422 23347899999999998763 689999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Ceee-e---EeecC---c-eEEEEec-CCC
Q 003271 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-G---VFKSG---A-TQMRFQP-RLG 693 (835)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~-~---~~~~~---i-~~l~fsp-~~~ 693 (835)
+|+.+++. +..+.- .+...-...+++ .+++ .| .||......+.+ ++.. . .+... + ..-.|.+ ++.
T Consensus 133 vD~~~~kv-v~ei~v-p~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDV-PDCYHIFPTAND-TFFM-HC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeC-CCCcEEEEecCC-ccEE-Ee-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998775 333332 112222222222 1111 12 244444333322 1111 1 11110 0 0114456 555
Q ss_pred EEEEEEcCCcEEEEECCCC-----eEEEEEcC-------CCCCeEEEEEcCCCCEEEEEe-----------CCeEEEEEc
Q 003271 694 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI 750 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~-----~~i~~l~~-------h~~~I~sl~fspdg~~Lasgs-----------Dg~I~IwDl 750 (835)
.+++... |.|++.|+... .....+.. ..+.+.-++++++++.++... .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 5555444 99999996432 22222211 233444599999998888742 258999999
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEec
Q 003271 751 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS 804 (835)
Q Consensus 751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l~ 804 (835)
.+. +.+..+.. +..+..++++||++ .|++.. .++.|.++|..+++.+...
T Consensus 287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 887 66666654 56899999999999 787777 4678999999999887443
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.2e-09 Score=122.60 Aligned_cols=274 Identities=15% Similarity=0.204 Sum_probs=196.6
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---------------eEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---------------~~i~~l~~h~~~V~sv~fspdg~~Latgs~D 618 (835)
......|++|+....|+|+|+.||.++|..+.+. ..-.++.+|.+.|.-+.|+.+...|-|+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4456899999999999999999999999976532 1225678999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEeec-CceEEEEecCCCEE
Q 003271 619 RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKS-GATQMRFQPRLGRI 695 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~~-~i~~l~fsp~~~~l 695 (835)
|.|.||-+-.+..+...+ ....+.|.+++|..+|. -++....||.|.+=.++..+.- +.+++ ....+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999988776533222 23456789999999987 4557778999888777654432 22332 25678899999999
Q ss_pred EEEEcCCcEEEEECCCC-------eEEEE----EcCCCCCeEEEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271 696 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 755 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~-------~~i~~----l~~h~~~I~sl~fs--------pdg~~Lasgs-Dg~I~IwDl~t~~~ 755 (835)
+.+-..|.+.+||.... .+... +......|..++|. |+...|+.+. .|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99989999999998642 12111 22233456777774 4667788887 78888776554432
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 756 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 756 ~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---------~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
...+ ..+-.+..+.|+++|..|++++.+. .|.+|..-....-++......|++++|-..|-.++.+
T Consensus 252 Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 2222 2246788999999999999998753 5666654433334667777889999997766555544
Q ss_pred CCCcEEE
Q 003271 827 HDKCVKI 833 (835)
Q Consensus 827 ~DG~V~I 833 (835)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 3555543
No 261
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.8e-09 Score=116.20 Aligned_cols=213 Identities=10% Similarity=0.160 Sum_probs=143.3
Q ss_pred CCCCeEEEEECCCCC--EEEE-----EECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEe--CC--
Q 003271 596 HTQWITDVRFSPSLS--RLAT-----SSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NN-- 662 (835)
Q Consensus 596 h~~~V~sv~fspdg~--~Lat-----gs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs--~D-- 662 (835)
|...|+.+.++|.+. .||+ .+.-..|+||.+..... .+..-.-....-..+.|++.|.-+|+..+ -|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 566788888887632 3333 23446788887762211 11111111223345678877776665443 22
Q ss_pred -------CcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEE--cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271 663 -------SEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWN 731 (835)
Q Consensus 663 -------g~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s--~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs 731 (835)
.++++.++...++.-.+ .++|.++.|++++..++++. .-..+.|||++ +.++..+ ..++-.++-|+
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn 320 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN 320 (566)
T ss_pred CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC
Confidence 37888888855554444 37799999999998776644 45789999997 4455555 45677899999
Q ss_pred CCCCEEEEEe----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEEcCCCcEE
Q 003271 732 TSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL 801 (835)
Q Consensus 732 pdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~------dg~I~IwDl~~~~~~ 801 (835)
|.|++|+.++ -|.|.|||+.+. +++..+... ..+-+.|+|||.+|++++. |+.++||++....+.
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccch---hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 9999999887 579999999886 677666643 3466899999999999987 568999998665443
Q ss_pred EeccCCCCeeEEEEeC
Q 003271 802 TLSAHDKLVSSLAAST 817 (835)
Q Consensus 802 ~l~~h~~~V~~la~sp 817 (835)
.. ........++|-|
T Consensus 396 ~~-~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 396 EK-MFKSELLQVEWRP 410 (566)
T ss_pred hh-hhhHhHhheeeee
Confidence 21 1122566777765
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=7.5e-11 Score=128.64 Aligned_cols=279 Identities=15% Similarity=0.214 Sum_probs=194.6
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D 618 (835)
-....+.||..+|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|-.+.++++++ |
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 34567789999999998877888899999999999998753 34667888999999999999998887764 7
Q ss_pred CeEEEEecCCCCceeEE----eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--------cCceEE
Q 003271 619 RTVRVWDTENPDYSLRT----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------SGATQM 686 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~----~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--------~~i~~l 686 (835)
|.|.+||.--++..... ..+..+.|.|+.- -+...+++.|+...+|+++|.+..+.+..++ .-+.++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 88999997655431111 1122234444431 1334456666889999999999987766554 227789
Q ss_pred EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEE-EEcCCCCCcceEEEeec
Q 003271 687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSC 764 (835)
Q Consensus 687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~I-wDl~t~~~~~~i~~l~~ 764 (835)
++.+.|++++++-..|.|.+.|.++++.+..+.........++ .|....|+... |.++.| |..-.+ ......+.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kp 958 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKP 958 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence 9999999999999999999999999998887765554444444 35556666655 888888 876554 22222222
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC-CC------cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT-EN------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~-~~------~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
...+... .-.-|+.|++......+.+|--. .. ..++.....+..++++.-|-+.-++.|...|.|.+
T Consensus 959 ppepahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 959 PPEPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCcchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2222111 12235667777777778887421 11 11223345677888888887777888888888875
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-09 Score=114.57 Aligned_cols=237 Identities=16% Similarity=0.279 Sum_probs=163.9
Q ss_pred cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCC------------CCCEEEEEEeCCCC
Q 003271 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK 568 (835)
Q Consensus 501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH------------~~~V~sl~fSpdg~ 568 (835)
.++....++++|..+|.|.+|-......+ .+.....+..| ..+|..+.|.+++.
T Consensus 32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 32 EFDHYGERLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred EeecccceEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 34445589999999999999933222111 12222222233 24688999998765
Q ss_pred --EEEEEeCCCeEEEEEcCCCeEE-----------------------------------EEe-ccCCCCeEEEEECCCCC
Q 003271 569 --LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRFSPSLS 610 (835)
Q Consensus 569 --~Lasgs~Dg~I~VWd~~t~~~i-----------------------------------~~l-~~h~~~V~sv~fspdg~ 610 (835)
.++..+.|++|++|.+...... +.+ ..|+.-|.+|.++.|..
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E 177 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE 177 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence 4667778999999976431110 111 25888899999999998
Q ss_pred EEEEEECCCeEEEEecCCCCceeEE--eecC-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----eEe
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRT--FTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVF 679 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~--~~~h-----~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~----~~~ 679 (835)
.++++ .|-.|.+|+++-...+... ++.+ ..-|++..|+|..-.+++-.+..|+|++.|++..... +.+
T Consensus 178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 88887 5778999998754433322 2222 2458899999988888888888999999999843211 111
Q ss_pred ---------------ecCceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEEEcCCCC------------C---eEEE
Q 003271 680 ---------------KSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------Q---VHSV 728 (835)
Q Consensus 680 ---------------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~------------~---I~sl 728 (835)
-..+..+.|+..|+++++-.. -+|++||+. ..+++.++.-|.. . -..+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 134788999999998876443 789999994 4566665554431 2 2457
Q ss_pred EEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271 729 CWNTSGEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 729 ~fspdg~~Lasgs-Dg~I~IwDl~t~ 753 (835)
+|+.++.++.+|+ .+.+++|++..+
T Consensus 336 ~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 336 SWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred EEcCCcceEecccccceEEEecCCCC
Confidence 8999999999999 889999997655
No 264
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1.3e-09 Score=127.95 Aligned_cols=145 Identities=22% Similarity=0.374 Sum_probs=120.0
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
.+=++++|+.-+.+-+|....+..+ + .+.||.+.|.++.|+.||+++++.+.|.++++|++
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p------------------~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKP------------------I-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI 204 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCc------------------c-eecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence 3457888888899999955422111 1 57899999999999999999999999999999999
Q ss_pred CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEeCC
Q 003271 585 ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 585 ~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~sgs~D 662 (835)
++.+... +.-+|+..|+.++|.|+ .++|++.|.++++|+.+... +..+.+|. ..|..++..++ ..++++++.|
T Consensus 205 ~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~D 279 (967)
T KOG0974|consen 205 DSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGND 279 (967)
T ss_pred ccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCC-ceEEEeeccC
Confidence 9988775 66689999999999998 99999999999999776533 45777775 46888888776 5688899999
Q ss_pred CcEEEEECCCC
Q 003271 663 SEIRYWSINNG 673 (835)
Q Consensus 663 g~I~iwDl~s~ 673 (835)
+.+++||+...
T Consensus 280 s~lk~~~l~~r 290 (967)
T KOG0974|consen 280 STLKLWDLNGR 290 (967)
T ss_pred cchhhhhhhcc
Confidence 99999998653
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.17 E-value=9.7e-10 Score=112.96 Aligned_cols=197 Identities=20% Similarity=0.261 Sum_probs=149.7
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCce-
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS- 632 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~--~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~- 632 (835)
...++.|++.+.-++++..+|.+.+-+.....+.. .++.|.-.++...|+. +.+++++|+.|+.+..||++.++..
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35678899999999999999999966655555444 7899999999999976 3578999999999999999954433
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE--eecCceEEEEecCCC-EEEEEEcCCcEEEEE
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV--FKSGATQMRFQPRLG-RILAAAIENYISILD 708 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~--~~~~i~~l~fsp~~~-~ll~~s~dg~I~IwD 708 (835)
......|...|.+|.-+|....++++|+.|-.|++||.++ ++.+.. ..+++..+..+|... .+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 3446779999999999998888999999999999999984 555543 347789999888643 455566666677777
Q ss_pred CCCC--e---EEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEE-EEEcCCC
Q 003271 709 VETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 753 (835)
Q Consensus 709 l~t~--~---~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~-IwDl~t~ 753 (835)
...+ + .....+.|.+-+..-.|.....+|++|+ |..++ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 7653 2 3344556777777777765567888887 77755 7765444
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=3.5e-08 Score=111.29 Aligned_cols=250 Identities=13% Similarity=0.082 Sum_probs=159.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl 646 (835)
+..|++++.++.|..+|..+++.+..+.........+.. ++..+++++.++.|..+|..+++...+ ... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR-AKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee-ecc-CceeecC
Confidence 558888888999999999999998776544432223333 466888888999999999998875332 221 2222221
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceE--------EEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQ--------MRFQPRLGRILAAAIENYISILDVETQVCRLKL 718 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~--------l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l 718 (835)
... .+. .++.+..++.|+.||.++++.+..+...... ..+ .++.++++..++.+..+|.++++.+...
T Consensus 141 p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 123 3445667999999999999987766533211 111 2357788888899999999999877654
Q ss_pred cCCC----CC------e-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271 719 QGHK----NQ------V-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786 (835)
Q Consensus 719 ~~h~----~~------I-~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~ 786 (835)
.... .. + .+..+ .+..+++++ ++.++.||..++ +.+..... ....... ..+..|++++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECC
Confidence 3110 00 1 01111 234555555 999999999887 44433331 1112222 24567889999
Q ss_pred CCeEEEEEcCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 787 YETLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 787 dg~I~IwDl~~~~~~~-l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|.|+.+|..+++.+- ..... ..+..... .+..|++++.||.|++||
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999999998762 21211 12223233 356888899999998875
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.15 E-value=6.8e-09 Score=113.70 Aligned_cols=269 Identities=17% Similarity=0.193 Sum_probs=186.9
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--------------
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 619 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg-------------- 619 (835)
-.-++..++|||.|.+|++.... .|.+|....+..+..+. | ..|..+.|+|.+++|.|=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 34568889999999999987654 59999988877665553 4 4599999999999999976533
Q ss_pred -eEEEEecCCCCceeEEeecCCCC--eE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEee-cCceEEEEec
Q 003271 620 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFK-SGATQMRFQP 690 (835)
Q Consensus 620 -~I~IWDl~t~~~~~~~~~~h~~~--V~-sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----~~~~~-~~i~~l~fsp 690 (835)
.+.|||+.++.. +..+..-..+ .+ -+.|+-+..+.+-. ....++|+++ ++.. .+.++ .++....|+|
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999998764 6666655544 44 56777775543323 2457999997 3322 22333 5688888888
Q ss_pred CCCE--EEEE-----EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe------------CCeEEEEEcC
Q 003271 691 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 751 (835)
Q Consensus 691 ~~~~--ll~~-----s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs------------Dg~I~IwDl~ 751 (835)
.++. |++- ...+.++||.+..+..+....-....-..+.|.+.|++|++-. +..++|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 7533 3332 2357899999987766554332222334688999998877532 2468888887
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-
Q 003271 752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 828 (835)
Q Consensus 752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~--dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D- 828 (835)
.. .+.......++|..++|.|.++.+++++. .-.+.++|++.+ +.....+..=+.+.|+|.+++++.++-|
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 43 22222255789999999999988777763 458999999888 4444555566778889999988887765
Q ss_pred --CcEEEeC
Q 003271 829 --KCVKIWK 835 (835)
Q Consensus 829 --G~V~IWd 835 (835)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 4677775
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.2e-08 Score=112.56 Aligned_cols=268 Identities=17% Similarity=0.225 Sum_probs=184.7
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-----------CCeEEEEecC
Q 003271 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 627 (835)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-----------Dg~I~IWDl~ 627 (835)
+-+.|||.|.||+|--.- -|.+|--++...+..+. |.+ |.-+.|||+.+||+|-+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 458999999999998654 48999888887777773 654 889999999999999754 2579999999
Q ss_pred CCCceeEEeec--CCCCe-EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--Eee-cCceEEEEecCCCEEEEEEcC
Q 003271 628 NPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK-SGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 628 t~~~~~~~~~~--h~~~V-~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~-~~i~~l~fsp~~~~ll~~s~d 701 (835)
++.. .+.+.. ....+ .-+.|+.|++++..-. ...|.||+..+...+. .++ .+|....|+|.+..|+.-+..
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9875 455443 22222 3467898877444333 4689999988754432 222 568888999998877765532
Q ss_pred -----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEEcCCCCCcceEEEeecC
Q 003271 702 -----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSCT 765 (835)
Q Consensus 702 -----g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg-----------~I~IwDl~t~~~~~~i~~l~~~ 765 (835)
..+.+..+.++..+++..-+.-.=..+.|-.+|.||+.--|. .+.|+.++.... .+.. -..
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~-vel 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEV-VEL 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Ccee-eec
Confidence 357788888777776655444334457888999999865421 456666665422 2222 223
Q ss_pred CCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCC-CcEEEe--ccCCCCeeEEEEeCCCCEEEEEE---CCCcEEEeC
Q 003271 766 GNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTE-NKTLTL--SAHDKLVSSLAASTVNGMVASAS---HDKCVKIWK 835 (835)
Q Consensus 766 ~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~-~~~~~l--~~h~~~V~~la~spdg~~LaSgs---~DG~V~IWd 835 (835)
...|...+|.|.|..+++.+... ++.+|.+++ .....+ .-.....+.+.|+|.|++++.+. ..|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 56789999999998888776653 899998873 222211 11225568899999999888765 356677665
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=5.2e-09 Score=116.74 Aligned_cols=187 Identities=18% Similarity=0.294 Sum_probs=147.3
Q ss_pred CCCCEEEEEECCCeEEEEecCCCCceeEEe--ecCCCCeEEEEE------cC-------------CCCcEEEEEeCCCcE
Q 003271 607 PSLSRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDF------HP-------------SKEDLLCSCDNNSEI 665 (835)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~--~~h~~~V~sl~f------sp-------------~g~~ll~sgs~Dg~I 665 (835)
|...++|....||.++|||...++...... ..-.+...+..| +| .+..+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 446789999999999999998776422111 112233334443 22 224567788889999
Q ss_pred EEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271 666 RYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg 740 (835)
.+|++..++....+. +.+.++.++.+-+.|.+++.|+.+..|+......++.+......+.++|.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887776 447888888888999999999999999999999999999989999999999999988876
Q ss_pred eCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEEcCC
Q 003271 741 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 797 (835)
Q Consensus 741 sDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd-----g~~L~sgs~-dg~I~IwDl~~ 797 (835)
+ +.|++||++++ +.+..+.+|.++|.++.|..+ |.+++++.. +..|.+|-+..
T Consensus 163 s-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 4 67999999998 899999999999999999877 666665544 44677776544
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=5.5e-08 Score=122.27 Aligned_cols=235 Identities=13% Similarity=0.164 Sum_probs=161.0
Q ss_pred EEEEEeCC-CCEEEEEeCCCeEEEEEcCCCeEEEEecc-C-------------CCCeEEEEECCCCCEEEEEEC-CCeEE
Q 003271 559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE-H-------------TQWITDVRFSPSLSRLATSSA-DRTVR 622 (835)
Q Consensus 559 ~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h-------------~~~V~sv~fspdg~~Latgs~-Dg~I~ 622 (835)
..++++++ +.++++-...+.|++||... ..+..+.+ . -.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788874 56677777788999999764 44433322 1 123578999998887666654 57899
Q ss_pred EEecCCCCceeEEeecC-----------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----
Q 003271 623 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----- 680 (835)
Q Consensus 623 IWDl~t~~~~~~~~~~h-----------------~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----- 680 (835)
++|+.++. +.++.+. -.....++|+|++..++++...++.|++||..++.......
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987654 3333211 11346799999767788888889999999998775432110
Q ss_pred ------------cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcC-------------C--------CCCeE
Q 003271 681 ------------SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 726 (835)
Q Consensus 681 ------------~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~-------------h--------~~~I~ 726 (835)
.....++++|+++.++++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12446899999986666654 58999999987653221100 0 11245
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--------------CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271 727 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------------TGNKFHSCVFHPTFPSLLVIGCYETLE 791 (835)
Q Consensus 727 sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--------------~~~~V~sv~fspdg~~L~sgs~dg~I~ 791 (835)
+++++++|.++++.. ++.|++||..++ ... .+.+ .-.....++++++|+.+++-+.++.|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg---~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATK---RVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCC---eEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 889999998777776 889999999876 222 2211 123577899999999777777788999
Q ss_pred EEEcCCCcE
Q 003271 792 LWNMTENKT 800 (835)
Q Consensus 792 IwDl~~~~~ 800 (835)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988764
No 271
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=6.1e-08 Score=110.47 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=149.3
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~-Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g 652 (835)
..|.+-|.+......... .. .+....|+|||+. ++..+.+ ..|+++|+.+++. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 355555654443332332 33 7788999999984 6654443 4689999987653 3444455667778899999
Q ss_pred CcEEEEEeCC--CcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCe
Q 003271 653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 725 (835)
Q Consensus 653 ~~ll~sgs~D--g~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I 725 (835)
+.++++.+.+ ..|+++|+.+++........ .....|+|+|+.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777655 46888898877654433322 3456899999988887753 2 688889988776443321 111
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003271 726 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 792 (835)
Q Consensus 726 ~sl~fspdg~~Lasgs-D-------g--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~I 792 (835)
...|+|||++|+... . + .|.+.|+.++. ...+... .......|+|||+.|+..+.++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999998776 2 2 67888887763 2233322 2233588999999888877654 5888
Q ss_pred EEcCCCcEEEeccCCCCeeEEE
Q 003271 793 WNMTENKTLTLSAHDKLVSSLA 814 (835)
Q Consensus 793 wDl~~~~~~~l~~h~~~V~~la 814 (835)
+++.......+....+.|...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8888776666655555554433
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=4.5e-08 Score=122.99 Aligned_cols=231 Identities=11% Similarity=0.116 Sum_probs=156.4
Q ss_pred EEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeec--------------CCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 601 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--------------HSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 601 ~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~--------------h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
..++++++ +.++++-+.++.|++||... .. +..+.. .-.....|+++++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788875 55667767788999999864 32 222221 112357899998877666665567889
Q ss_pred EEEECCCCeeeeEee-------------------cCceEEEEecCCCEEEEE-EcCCcEEEEECCCCeEEEEEcCC----
Q 003271 666 RYWSINNGSCAGVFK-------------------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGH---- 721 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~-------------------~~i~~l~fsp~~~~ll~~-s~dg~I~IwDl~t~~~i~~l~~h---- 721 (835)
+++|+.++....... .....++++|+++.++++ +.++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999998765432211 123568999965555554 557899999998775432 2111
Q ss_pred -----------CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEE-----------Eeec--------CCCce
Q 003271 722 -----------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNKF 769 (835)
Q Consensus 722 -----------~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~-----------~l~~--------~~~~V 769 (835)
-.....|+|+|++..|+++. ++.|++||+.++.. ..+. .+.. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12345799999998666555 78999999987531 1110 0000 01134
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccC--------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h--------------~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.+++|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 6889999998777777788999999998887654332 13578899999999999988999999996
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.10 E-value=8.8e-08 Score=103.95 Aligned_cols=282 Identities=14% Similarity=0.103 Sum_probs=187.5
Q ss_pred ccccccccCC-CceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC-CCeEEEEeccCCCC--eEEEEECC
Q 003271 532 RVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQW--ITDVRFSP 607 (835)
Q Consensus 532 ~~~~~~~~~~-g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h~~~--V~sv~fsp 607 (835)
..+.+|-... +.+|..+..+.+| |+|-.+-. ++..+....||.=.||+++ .|+- ++.|+.. -.+=..+.
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~---vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkD---lrrHTnFtdYY~R~~ns 276 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGN---VSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKD---LRRHTNFTDYYPRNANS 276 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCC---cCCceEEc-ceEEEEecccCccceEEeccCCch---hhhcCCchhccccccCC
Confidence 3445554443 4488888888888 43333332 3344445566665666543 2222 2234331 12333456
Q ss_pred CCCEEEEEECCCeEEEEecCCCCceeEEee-----cC--C---CCeEEEE-EcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 003271 608 SLSRLATSSADRTVRVWDTENPDYSLRTFT-----GH--S---TTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (835)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~-----~h--~---~~V~sl~-fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~ 676 (835)
||+.++.. ..|.|.+||.++.......+. .. . .+..-+. |++....+++..+ .|...+.+...+-.+
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE
Confidence 88877664 567899999887653211111 00 0 1111111 3443344555555 677888877766555
Q ss_pred eEe-ecCceEEEEecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271 677 GVF-KSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 677 ~~~-~~~i~~l~fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~ 753 (835)
..- +.++.-..+..+...++.|..|| .+-|||.++++... +...-+.|.++..+++|++++++. ...|.++|+.++
T Consensus 355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence 443 35577777888888899999998 89999999887554 444678899999999999999988 559999999998
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg----~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
. ....-....+-|+.+.|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus 434 n---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 434 N---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred C---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3 2222233457799999999999999988777 89999999999986666666667789999999776544
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=9.1e-10 Score=124.22 Aligned_cols=276 Identities=18% Similarity=0.312 Sum_probs=193.0
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeccCCC--CeEEEEECCC--CCEEEEEECCCeEEEEecCCC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQ--WITDVRFSPS--LSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h~~--~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~ 629 (835)
.+.+.++.++|.|+-+|.++.-| +.+-|++. +....-+. |.. .|-++.|++. -.+-++......-.||++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 34588899999999999988766 44556543 33333332 322 4667888875 334444445556778987643
Q ss_pred --CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeE---eecCceEEEEecCCCEEEEEEcCCc
Q 003271 630 --DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGV---FKSGATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 630 --~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~---~~~~i~~l~fsp~~~~ll~~s~dg~ 703 (835)
......+.+|...|+.+-|+|....++++|+.|-.+..||+++... +.. .......+.|+.....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 2334567889999999999999999999999999999999998643 333 2356888999999999999999999
Q ss_pred EEEEECCCC-eEEEEEcCCCCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271 704 ISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 704 I~IwDl~t~-~~i~~l~~h~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~ 780 (835)
|.+||++.+ .++..+++|...|..+.|..- ...+.+++ |++|+.||...... .-........+|+.-.+.|-|.-
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCce
Confidence 999999976 677888999999999988653 23344455 99999999876532 11122233556777777776543
Q ss_pred EEEEEc--CCeEEEE---------EcCCCc-E-EEeccCCCCeeEEEEeCCCC----------EEEEEECCCcEEEe
Q 003271 781 LLVIGC--YETLELW---------NMTENK-T-LTLSAHDKLVSSLAASTVNG----------MVASASHDKCVKIW 834 (835)
Q Consensus 781 L~sgs~--dg~I~Iw---------Dl~~~~-~-~~l~~h~~~V~~la~spdg~----------~LaSgs~DG~V~IW 834 (835)
.++--. +..+.++ ++.++. . .++.+|.+.|..+-|-..+. .|+|-+.|..+++|
T Consensus 260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 332211 1133333 333322 2 37889999988776643221 79999999999999
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=3e-09 Score=109.72 Aligned_cols=238 Identities=17% Similarity=0.316 Sum_probs=163.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-----eEEEEeccCC------------CCeEEEEECCCC--CEEEE
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHT------------QWITDVRFSPSL--SRLAT 614 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----~~i~~l~~h~------------~~V~sv~fspdg--~~Lat 614 (835)
..+.|+++.|...|.||++|...|.|.+|.-+.. +....+.+|. ..|..|.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4567999999999999999999999999975532 2223344443 357888887653 35777
Q ss_pred EECCCeEEEEecCCCC-----------------------------------------ceeEEe-ecCCCCeEEEEEcCCC
Q 003271 615 SSADRTVRVWDTENPD-----------------------------------------YSLRTF-TGHSTTVMSLDFHPSK 652 (835)
Q Consensus 615 gs~Dg~I~IWDl~t~~-----------------------------------------~~~~~~-~~h~~~V~sl~fsp~g 652 (835)
.+.|.+|++|.+.... .+.+.+ ..|.-.|.++.|..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7799999999875431 001112 3567778899999886
Q ss_pred CcEEEEEeCCCcEEEEECCCCee-ee--Eee--------cCceEEEEecCCC-EEEEEEcCCcEEEEECCCCeE------
Q 003271 653 EDLLCSCDNNSEIRYWSINNGSC-AG--VFK--------SGATQMRFQPRLG-RILAAAIENYISILDVETQVC------ 714 (835)
Q Consensus 653 ~~ll~sgs~Dg~I~iwDl~s~~~-~~--~~~--------~~i~~l~fsp~~~-~ll~~s~dg~I~IwDl~t~~~------ 714 (835)
..++ ++ .|-.|.+|++..... .. .++ .-+++..|+|... .+...+..|.|++.|++....
T Consensus 185 et~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 6444 44 478999999864321 11 111 2277788999754 455667789999999983211
Q ss_pred E----------EEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC------------Cce---
Q 003271 715 R----------LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF--- 769 (835)
Q Consensus 715 i----------~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~------------~~V--- 769 (835)
+ .-+.+-...|..+.|+++|+||++-+--+|+|||++..+ .++.++..|. ..|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 1 111223457888999999999998888899999998764 4565553332 122
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 770 HSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
..|.|+.+...+++|+.....-||-+
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEEecCCcccccccccccceeeecc
Confidence 45778888888888888777666653
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=3.4e-07 Score=113.22 Aligned_cols=279 Identities=15% Similarity=0.209 Sum_probs=183.6
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEE----EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC-
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 627 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW----d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~- 627 (835)
...+.|.++.|-++..-|+.+..+|.|.++ +..+... .....-...|.+++||||...|+.++.+++|.+-+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 445789999999999999999999999999 5544322 2222345789999999999999999999888776421
Q ss_pred -----------C-C----------Ccee------------------------EEeecCCCCeEEEEEcCCCCcEEEEEe-
Q 003271 628 -----------N-P----------DYSL------------------------RTFTGHSTTVMSLDFHPSKEDLLCSCD- 660 (835)
Q Consensus 628 -----------t-~----------~~~~------------------------~~~~~h~~~V~sl~fsp~g~~ll~sgs- 660 (835)
. + ++.. ..+. +.+.-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 0 0 0000 0011 3334567889999986665553
Q ss_pred -C---CCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc---CCcEEEEECCC---CeEEEEEcCCCCCeEE
Q 003271 661 -N---NSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI---ENYISILDVET---QVCRLKLQGHKNQVHS 727 (835)
Q Consensus 661 -~---Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~---dg~I~IwDl~t---~~~i~~l~~h~~~I~s 727 (835)
. -..|+||+-+ |....+.. +--..++|.|.|+.|++.-. ...|.+|.-+. ++....+......|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 2589999987 54433322 22567899999998887765 23455665432 2222223235668999
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEc----CCC---
Q 003271 728 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN--- 798 (835)
Q Consensus 728 l~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl----~~~--- 798 (835)
+.|++|+.+|+....+.|.+|-..+.. .....++... ...+..+.|+|.... |.+.+.++.+.+++. ..+
T Consensus 310 l~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 999999999999886669999887652 1222333322 233455899997654 555555565544432 211
Q ss_pred -------------cEE----------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 799 -------------KTL----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 799 -------------~~~----------------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..+ ........|.+++|++++..+++-..||.|.+|+
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 111 0112356799999999998899999999999884
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=9.2e-08 Score=109.05 Aligned_cols=210 Identities=14% Similarity=0.175 Sum_probs=152.6
Q ss_pred CceeEEEEEecCCCCCEEEEEEeCC------C------CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC--
Q 003271 542 GFTFTEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-- 607 (835)
Q Consensus 542 g~~~~~i~~l~gH~~~V~sl~fSpd------g------~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp-- 607 (835)
...+..+..+..|...|+.+.|.|- + -+||++...|.|.|||...+..+..+..|.++|.+++|.+
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence 3455667888899999999999873 1 2578888899999999999999999999999999999976
Q ss_pred -CC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CeeeeE
Q 003271 608 -SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGV 678 (835)
Q Consensus 608 -dg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-------~~~~~~ 678 (835)
+. ..|++-....+|.+|+..++.. +..+........|+.+.|-...-++.-+..|.|.+.+.-. ++....
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI 200 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI 200 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence 34 4666667778999999999886 4444444456778999886544455555567666665421 111110
Q ss_pred ee--------------------cC--------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003271 679 FK--------------------SG--------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 730 (835)
Q Consensus 679 ~~--------------------~~--------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f 730 (835)
-. .+ ...++|+|.-+.++.......+.|+|++-..++..+.-..+.+.-+.|
T Consensus 201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~v 280 (1062)
T KOG1912|consen 201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDV 280 (1062)
T ss_pred ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEe
Confidence 00 00 123568888888888899999999999988888776656666666777
Q ss_pred cCCC--CEEEEEe-CCeEEEEEcCC
Q 003271 731 NTSG--EYLASVS-DELVRVWSIGS 752 (835)
Q Consensus 731 spdg--~~Lasgs-Dg~I~IwDl~t 752 (835)
-|++ ..|++.. ||.+.+|-.+.
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeec
Confidence 7765 5677776 99888886543
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.04 E-value=8.9e-10 Score=134.27 Aligned_cols=188 Identities=23% Similarity=0.322 Sum_probs=149.9
Q ss_pred cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (835)
Q Consensus 503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (835)
...+.+..+|+-|+.+++| +++.+......++.-. ..|+.+.|+..|..+..+..||.+.+|
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~----------------~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMF----------------EWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred CCCCceEEecCCCceEEEE----------------eccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeec
Confidence 4456788899999999998 3444445555544433 789999999999999999999999999
Q ss_pred EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE---CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 583 d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs---~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg 659 (835)
.+. .+.....+.|.....+++|-. ..+++++ .++.+.+||..-..........|...++++++.|. ..++++|
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~-~qllisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK-HQLLISG 2354 (2439)
T ss_pred ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc-ceEEEec
Confidence 987 567777888999999999975 6777764 46899999975443322333889999999999998 4588899
Q ss_pred eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc
Q 003271 660 DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 719 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~ 719 (835)
+.+|.|++||++..+.++.+.. ++ ...++++++..|.|+||++.....++.+.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999998888777765 34 55789999999999999999876666654
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=7.3e-08 Score=109.81 Aligned_cols=191 Identities=10% Similarity=0.083 Sum_probs=131.5
Q ss_pred CEEEEEEeCCCCE-EEEEeC---CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECC--CeEEEEecCCC
Q 003271 557 KVESCHFSPDGKL-LATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SAD--RTVRVWDTENP 629 (835)
Q Consensus 557 ~V~sl~fSpdg~~-Lasgs~---Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~D--g~I~IWDl~t~ 629 (835)
.+....|+|||+. ++..+. +..|+++|+.+++...... ..+.+....|+|||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6788999999984 665443 3569999998887655443 55566778899999877654 333 46888888766
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcC------
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE------ 701 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~d------ 701 (835)
. .+.+..+........|+|||+.++++.+..+ .|+++|+.+++.......+.....|+|+|+.++.....
T Consensus 268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence 5 3444444443445689999998888876554 68888888877644433332345899999999887754
Q ss_pred ---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCC
Q 003271 702 ---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGS 752 (835)
Q Consensus 702 ---g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t 752 (835)
..|.++|+.++.... +... .......|+|||+.|+..+ .+ .+.++++..
T Consensus 346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 368888998876543 3322 2333688999999887766 23 466666654
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.2e-07 Score=106.88 Aligned_cols=304 Identities=11% Similarity=0.185 Sum_probs=189.6
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
++++++|+.|+.+++.-...+.+.....+ ......+..-.++.||...|.-+.|+.....|-+...+|.|.||-+-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 48999999999999983322222111111 11123344556889999999999999999999999999999999887
Q ss_pred CCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--------------------------------
Q 003271 586 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-------------------------------- 631 (835)
Q Consensus 586 t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-------------------------------- 631 (835)
.+.-.... ......|.+++|+.||..++..-.||.|.|=.++.++.
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h 181 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH 181 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence 66533222 12445788999999999988888888776544432210
Q ss_pred ---------------e-e---EEeecCCCCeEEEEEc--------CCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--
Q 003271 632 ---------------S-L---RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-- 682 (835)
Q Consensus 632 ---------------~-~---~~~~~h~~~V~sl~fs--------p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-- 682 (835)
+ + ..+......|..+.|. |+ ...++.|..+|.+.+-.-.+......+..+
T Consensus 182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~ 260 (1189)
T KOG2041|consen 182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK 260 (1189)
T ss_pred EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence 0 0 0011112234455553 23 346667777777776655443333333333
Q ss_pred ceEEEEecCCCEEEEEEcCC---------cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271 683 ATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 753 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~ 753 (835)
+....|+++|..+++++.+. .|.+|. .-|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++..
T Consensus 261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred eecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 66788999999999887642 344443 34677778887889999999999998999888999999998765
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
- ....+. . .+.|.-.++-+ -.-.|.+||..+.+.. +...| ..+++|..+--.|++-.+||.|
T Consensus 340 y---kWgy~e---~---TvVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 340 Y---KWGYIE---E---TVVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred c---eEEEee---e---EEEEEEccCCC----cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCCC
Confidence 2 111111 0 11111000000 0116889998877644 33333 3455666555556665666554
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=2.8e-09 Score=130.03 Aligned_cols=208 Identities=15% Similarity=0.233 Sum_probs=162.8
Q ss_pred CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCce
Q 003271 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGAT 684 (835)
Q Consensus 609 g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~ 684 (835)
+..+..+..++.+.-|..+... .....+-..|.++.-+|... +.++|+.||.|++|....+..+..+. ..++
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3444445556666666655433 23344556788888888866 55599999999999998888877765 3477
Q ss_pred EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcceEE
Q 003271 685 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH 760 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~ 760 (835)
.+.|+..|+.+.++..||.+.+|.+. .++......|....+.+.|-. ..+++.+ ++.+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 88999999999999999999999998 667777778999999998876 4455543 5699999987654445666
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 761 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 761 ~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+|.+.++++++.|....|++|+.+|.|++||++..+.. .+.. ++ ...+|++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999877665 2222 44 567999999999999995
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.95 E-value=1.6e-08 Score=106.08 Aligned_cols=243 Identities=12% Similarity=0.218 Sum_probs=172.2
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 588 ~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
..+..+++|.+.|++...-|...-+++.+.|.+++||--.+ +.+-......-..+++++.+.++.. .|+.|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence 34567889999999999989888899999999999996443 3332233334567889999998854 666888889998
Q ss_pred EEECCCC----eeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 003271 667 YWSINNG----SCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 739 (835)
Q Consensus 667 iwDl~s~----~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las 739 (835)
-+.+... ...+.. .+.+..+.|+-....+++.+.|..+.---.+.+..+..+. .....+++.+.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEe
Confidence 8876432 222222 2457778888888888888888766544444433221111 0011111111111 3334
Q ss_pred Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--EEEeccCCCCeeEEEEe
Q 003271 740 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLTLSAHDKLVSSLAAS 816 (835)
Q Consensus 740 gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--~~~l~~h~~~V~~la~s 816 (835)
|. .|.|.+..+.... ...+.++.+|...+.+++|.+....|+++..|..|.+||+-.++ ...+.+|.+.|..+...
T Consensus 171 Gd~~gqvt~lr~~~~~-~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNG-CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecC-CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 44 5555555443321 26788899999999999999999999999999999999986655 44788999999999988
Q ss_pred CCCCEEEEEECCCcEEEeC
Q 003271 817 TVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 817 pdg~~LaSgs~DG~V~IWd 835 (835)
+.-+.+++++.||.|.+|+
T Consensus 250 ~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhheeeeeccCCCeEEEEe
Confidence 8888999999999999996
No 283
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.95 E-value=8e-07 Score=96.71 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=131.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC-eEEEEecCCCCceeEEeecCCCCeE
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM 644 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg-~I~IWDl~t~~~~~~~~~~h~~~V~ 644 (835)
+|.+++..+. |.+.|.+...+-.+.. +|...|.-..+..+++-++.|..|| .+-|||.++++ ++.+...-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceE
Confidence 6788888874 7788877665554433 5777899999988888999999999 99999999865 466666778899
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCC----cEEEEECCCCeEEEE
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLK 717 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg----~I~IwDl~t~~~i~~ 717 (835)
++..+++|+.++ .+.....|.++|+.++.....-+ +-++.+.|+|++.+++.+--+| .|++||+..++....
T Consensus 406 av~vs~dGK~~v-vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 406 AVKVSPDGKKVV-VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEEcCCCcEEE-EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 999999988544 66668899999999987654443 3389999999999999877665 699999998876654
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEe
Q 003271 718 LQGHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 718 l~~h~~~I~sl~fspdg~~Lasgs 741 (835)
.. ....=.+-+|.|++++|..-+
T Consensus 485 TT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 485 TT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cC-CcccccCcccCCCCcEEEEEe
Confidence 43 334445678999999887654
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.95 E-value=9.3e-09 Score=110.08 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=116.1
Q ss_pred ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (835)
Q Consensus 502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (835)
..+..++++++..++...+|+...... +..+.....+......|..+..+.........+....+.+
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 355567888888888777774433322 1222333334444444555554443333333455566777
Q ss_pred EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (835)
Q Consensus 582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~ 661 (835)
|....+..... -+|-.-+++|+|+||+++|+|+..|..|+|-.+...........||...|..++..++ +.|++++.
T Consensus 137 ~s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sG 213 (390)
T KOG3914|consen 137 LSADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSG 213 (390)
T ss_pred ecccccCcchh-hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCC
Confidence 77666555544 4899999999999999999999999999999887655444566789999999999876 45779999
Q ss_pred CCcEEEEECCCCeeeeEee
Q 003271 662 NSEIRYWSINNGSCAGVFK 680 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~~~~~ 680 (835)
|++|++||+.+++++.++.
T Consensus 214 D~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCcEEEEecccCCcccccc
Confidence 9999999999999987765
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.92 E-value=1e-07 Score=98.36 Aligned_cols=240 Identities=13% Similarity=0.117 Sum_probs=161.9
Q ss_pred CCCEEEEEEeC---CCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCC------CeEEEEECCCCCEEEEEECCCeEEEE
Q 003271 555 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WITDVRFSPSLSRLATSSADRTVRVW 624 (835)
Q Consensus 555 ~~~V~sl~fSp---dg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~------~V~sv~fspdg~~Latgs~Dg~I~IW 624 (835)
+..+..+.|.. +|. .|+-+..+|.|.+|..........+.+-.. ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 44566677754 455 466677789999997765444444433211 24578899989999999999999865
Q ss_pred ecCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Ceee----eEeecCceEEEEecC-CCEEEE
Q 003271 625 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA----GVFKSGATQMRFQPR-LGRILA 697 (835)
Q Consensus 625 Dl~t~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~----~~~~~~i~~l~fsp~-~~~ll~ 697 (835)
+...... .+..++.|.-+++...|+....+++++|++|+.+..||++. ++.+ +....++.++.-+|. ..+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 5544332 13478899999999999988888999999999999999993 3333 233466777776654 568999
Q ss_pred EEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCc--ceEEEeecCCCceEEE
Q 003271 698 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC 772 (835)
Q Consensus 698 ~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg--~~LasgsDg~I~IwDl~t~~~~--~~i~~l~~~~~~V~sv 772 (835)
|+.|..|++||.+. ++++..-. -.+.|..++++|.- .+|++|--+-.+|.+...+... ......+.|.+-+..-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999994 55555433 45789999999853 4455555444677776654321 1333445555555566
Q ss_pred EEeCCCCEEEEEEc-CCeEE-EEEc
Q 003271 773 VFHPTFPSLLVIGC-YETLE-LWNM 795 (835)
Q Consensus 773 ~fspdg~~L~sgs~-dg~I~-IwDl 795 (835)
.|.....+|++++. |..|+ +|-.
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ccccccceeeeeeccccceeeeeee
Confidence 66444456777654 33433 5543
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=5.1e-06 Score=87.94 Aligned_cols=217 Identities=15% Similarity=0.176 Sum_probs=144.7
Q ss_pred EEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEEC-CCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 559 ~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fs-pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
.+++|.+ ++.++++-...+.|+.|+..+++..... ... ...+++. +++ .|+.+..++ +.++|+.+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence 3678998 7777777777899999999887665322 222 6677777 564 555555555 5666988775422111
Q ss_pred e---c-CCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEE-cC
Q 003271 637 T---G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAA-IE 701 (835)
Q Consensus 637 ~---~-h~~~V~sl~fsp~g~~ll~sgs~D--------g~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~d 701 (835)
. . .....+.+++.++|+ ++++.... |.|+.++.. ++...... .....++|+|+++.|+++. ..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 1 345678999999987 55555433 568888888 55443333 3367899999999887665 46
Q ss_pred CcEEEEECCC--C-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 702 NYISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 702 g~I~IwDl~t--~-----~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
+.|..|++.. . +....+....+....++++.+|++.++.. .+.|.++|.. + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 8899999853 2 11222332233478899999999888776 8899999987 5 56666666666899999
Q ss_pred Ee-CCCCEEEEEEc
Q 003271 774 FH-PTFPSLLVIGC 786 (835)
Q Consensus 774 fs-pdg~~L~sgs~ 786 (835)
|. ++.+.|++.+.
T Consensus 232 fgg~~~~~L~vTta 245 (246)
T PF08450_consen 232 FGGPDGKTLYVTTA 245 (246)
T ss_dssp EESTTSSEEEEEEB
T ss_pred EECCCCCEEEEEeC
Confidence 94 67777777653
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=3.3e-06 Score=89.34 Aligned_cols=213 Identities=7% Similarity=0.017 Sum_probs=140.0
Q ss_pred EEEECC-CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeEe
Q 003271 602 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (835)
Q Consensus 602 sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~ 679 (835)
+++|.+ ++.++++-...+.|+.|+..++.. ..+... . ...+.+. ++ ..++ .+.. +.+.++|+.+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~-~-~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLP-G-PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESS-S-EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecC-C-CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEEe
Confidence 678988 666777766789999999987653 222222 2 6777777 55 4454 4443 45666699988665443
Q ss_pred ec--------CceEEEEecCCCEEEEEEcC--------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--
Q 003271 680 KS--------GATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-- 741 (835)
Q Consensus 680 ~~--------~i~~l~fsp~~~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-- 741 (835)
.. ....+++.++|+.+++.... |.|+.++.. ++...... .-.....|+|+|+++.|+.+.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence 32 26779999998866655533 558888887 55444433 345678999999999887665
Q ss_pred CCeEEEEEcCCCCC-c---ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEe
Q 003271 742 DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 816 (835)
Q Consensus 742 Dg~I~IwDl~t~~~-~---~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~s 816 (835)
.+.|..|++..... . ..+..+.......-.+++..+|+..++....+.|.++|.+ ++.+ .+.-....+++++|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 77999999875422 1 1222233333358889999999877777778899999988 6665 343334589999995
Q ss_pred -CCCCEEEE
Q 003271 817 -TVNGMVAS 824 (835)
Q Consensus 817 -pdg~~LaS 824 (835)
++.+.|+.
T Consensus 234 g~~~~~L~v 242 (246)
T PF08450_consen 234 GPDGKTLYV 242 (246)
T ss_dssp STTSSEEEE
T ss_pred CCCCCEEEE
Confidence 56554443
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.88 E-value=1.2e-06 Score=91.72 Aligned_cols=214 Identities=12% Similarity=0.021 Sum_probs=137.9
Q ss_pred CCeEEEEEcCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 576 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h--~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
+|.|..||..+++.+....-- .....+. ..+++.++++++.++.|..||..+++. +..+.. ...+....... +.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~-~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVD-GG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEE-TT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeec-cc
Confidence 689999999999999877531 1222211 223566788889999999999998875 333332 22221111222 23
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEe-ecC------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC--
Q 003271 654 DLLCSCDNNSEIRYWSINNGSCAGVF-KSG------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-- 724 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~-~~~------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-- 724 (835)
.+ +.+..++.|+.+|..+++.+..+ ... .........++.++++..++.|..+|+++++.+.........
T Consensus 78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cc-ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 34 45556889999999999998874 321 122333344788999999999999999999998887654322
Q ss_pred --------eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 725 --------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 725 --------I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
+.+-....++ .++.++ ++.+..+|+.++ +.+.... ...+.. .....+..|++++.++.|.+||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 1222233345 555555 775444499988 4333222 222222 24567788888889999999999
Q ss_pred CCCcEE
Q 003271 796 TENKTL 801 (835)
Q Consensus 796 ~~~~~~ 801 (835)
.+++.+
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 999875
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.87 E-value=1.4e-06 Score=99.09 Aligned_cols=253 Identities=11% Similarity=0.014 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC----
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT---- 642 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~---- 642 (835)
+..|+.++.++.|+.+|.++|+.+............... .+..+++++.++.|..+|..+++............
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 456777888999999999999988776543321111122 23467778889999999999988533322111000
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc----------eEEEEec--CCCEEEEEEcCCcEEEEECC
Q 003271 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA----------TQMRFQP--RLGRILAAAIENYISILDVE 710 (835)
Q Consensus 643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i----------~~l~fsp--~~~~ll~~s~dg~I~IwDl~ 710 (835)
..+-... +. .++.++.++.+..+|..+++.+....... ..+..+| .++.+++++.++.++.+|..
T Consensus 198 ~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 0011111 12 34456678999999999988765543110 0011112 35788888899999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcCC
Q 003271 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~dg 788 (835)
+++.+....- .....+.. .+..|+.++ ++.|..+|..++ +.+-..... .....+..+ .+..|++++.+|
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG---~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G 345 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGG---VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG 345 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCC---cEEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence 9988766542 11112222 344555555 999999999887 333222111 111222222 245789999999
Q ss_pred eEEEEEcCCCcEE-EeccCCCCee-EEEEeCCCCEEEEEECCCcEEEeC
Q 003271 789 TLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 789 ~I~IwDl~~~~~~-~l~~h~~~V~-~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|+++|..+++.+ ...-....+. ...+. +..|+.++.||.|+.++
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 9999999999987 3322222232 22332 45788889999988764
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.5e-09 Score=122.55 Aligned_cols=263 Identities=14% Similarity=0.188 Sum_probs=184.9
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--eE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 621 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--~I 621 (835)
.|+.+++++.|+...+|++|+.+.++|++|+..|.|++|++.+|........|...|+.|.-+.||..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4667888899999999999999999999999999999999999999999999999999999999999887765533 57
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-------CceEEEEecCCCE
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-------GATQMRFQPRLGR 694 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-------~i~~l~fsp~~~~ 694 (835)
.+|++.+-....+.|. .-.++.|+......+ .|.......+||+.++..+.++-. .-.+..|+|++..
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999886444445544 345777876533223 344446788999999877655321 2456779999877
Q ss_pred EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEE
Q 003271 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 774 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f 774 (835)
++- || .+||++..+.++.|......+ .-.|+|.|.-++.-+ .|||+++. +.++.... -.-+.+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHH---HHHhcCcc--ccceEEEe
Confidence 763 33 589999988888776544222 336899998887754 58999987 44444332 22356677
Q ss_pred eCCCCEEEEEEc-----C------------CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 775 HPTFPSLLVIGC-----Y------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 775 spdg~~L~sgs~-----d------------g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
+..|..++..-. + ...+-||....+.+........|.++|-.+...+++.--
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence 777775554330 0 134444555555554445556677777777666665543
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=2e-07 Score=106.34 Aligned_cols=238 Identities=15% Similarity=0.209 Sum_probs=171.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC------C------CEEEEEECCCeE
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS------L------SRLATSSADRTV 621 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd------g------~~Latgs~Dg~I 621 (835)
|...-.++.|+|.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|.|.|- . -+|+++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33346788999987 7888875 57899999999999999999999999999872 1 256777778999
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcC---CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCC-CE
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRL-GR 694 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp---~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~-~~ 694 (835)
.+||...... +..+..|.++|..++|.+ +.++++++-.....|.+|+..+|+....+... ..++.++|-+ .+
T Consensus 92 il~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 9999997664 667788889999999976 34467777777889999999999988766533 4567777754 55
Q ss_pred EEEEEcCCcEEEEECCC-------CeEEEEEcCCCC------------C-------------eEEEEEcCCCCEEEEEe-
Q 003271 695 ILAAAIENYISILDVET-------QVCRLKLQGHKN------------Q-------------VHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~------------~-------------I~sl~fspdg~~Lasgs- 741 (835)
+.+.+..|.+.+.+.-. ++....-..|.. . ...++|+|.-+.++...
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 66666677776665431 222222222222 0 01245677655444444
Q ss_pred CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEEcCC
Q 003271 742 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg--~~L~sgs~dg~I~IwDl~~ 797 (835)
...+.|+|++-. .++.......+.+.-+.+-|+. ..|++.-.+|.+.||-.+.
T Consensus 251 prellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 251 PRELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 888999999876 6676666666666666666654 5799999999999996544
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=9.3e-09 Score=110.93 Aligned_cols=272 Identities=16% Similarity=0.121 Sum_probs=178.4
Q ss_pred CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEE
Q 003271 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (835)
Q Consensus 504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VW 582 (835)
....++.+++.|+.++.|-.. ...-..-++.+..|-+.|.+++.+-||.++.+++. |..++++
T Consensus 18 tka~fiiqASlDGh~KFWkKs----------------~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKS----------------RISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ehhheEEeeecchhhhhcCCC----------------CccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 345789999999999999110 01223345667889999999999999999999777 9999999
Q ss_pred EcCCCeEEEEecc--CCCCeEEEEECCC-C-CEEEEE-ECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEE
Q 003271 583 CTESFTVKSTLEE--HTQWITDVRFSPS-L-SRLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLL 656 (835)
Q Consensus 583 d~~t~~~i~~l~~--h~~~V~sv~fspd-g-~~Latg-s~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll 656 (835)
|+++...+.-++. -.+.+.++ .++. - ..|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++ .+
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SA 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ce
Confidence 9988766543322 22222221 2221 1 133333 357899999977554333 34456899999999999977 56
Q ss_pred EEEeCCCcEEEEECCC------CeeeeEe------------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271 657 CSCDNNSEIRYWSINN------GSCAGVF------------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s------~~~~~~~------------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l 718 (835)
++....|.|..|.... .+....+ +....++.|+|++..+.+.+.|..|++++.++++.+..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 6888899999999873 1111111 244788999999999999999999999999999888776
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 719 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 719 ~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
......-.+. +... +.+-++.-+.....-+++..++ ..-..++|...+++|+.++--| |+++++.+
T Consensus 240 DE~~t~~~~q---~ks~---------y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 240 DEVLTDAQYQ---PKSP---------YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred hccchhhhhc---cccc---------cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 5322211111 1111 1111111111111112222222 3346678999999998887764 88889988
Q ss_pred CcEEEeccC
Q 003271 798 NKTLTLSAH 806 (835)
Q Consensus 798 ~~~~~l~~h 806 (835)
+.+.++.+.
T Consensus 307 n~v~ri~gk 315 (558)
T KOG0882|consen 307 NTVVRILGK 315 (558)
T ss_pred CeEEEEecc
Confidence 887765543
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.84 E-value=3.1e-06 Score=90.29 Aligned_cols=242 Identities=14% Similarity=0.128 Sum_probs=163.3
Q ss_pred EEEEEEeC-CCCEEEEEeCCC-eEEEEEcCCCeEEEEeccCCCCe--EEEEECCCCCEEEEEEC-----CCeEEEEecCC
Q 003271 558 VESCHFSP-DGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTEN 628 (835)
Q Consensus 558 V~sl~fSp-dg~~Lasgs~Dg-~I~VWd~~t~~~i~~l~~h~~~V--~sv~fspdg~~Latgs~-----Dg~I~IWDl~t 628 (835)
...++.+| ++..++.+-.-| ...+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34578888 555677776655 47889999999887775433322 14679999999999754 48999999995
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCC--CEEEEEEcCCcEEE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRL--GRILAAAIENYISI 706 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~--~~ll~~s~dg~I~I 706 (835)
.-..+..+..|.-....+.+.|+++.+++.-+ -|. -+|+. ..+=..+.+..+.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG---GI~---------------------Thpd~GR~kLNl~tM~psL~~ 142 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANG---GIE---------------------THPDSGRAKLNLDTMQPSLVY 142 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcC---CCc---------------------cCcccCceecChhhcCCceEE
Confidence 44456778888777888999999976665432 221 01111 11223344566777
Q ss_pred EECCCCeEEEE--E--cCCCCCeEEEEEcCCCCEEEEEe-CC-------eEEEEEcCCCCCcceEE----EeecCCCceE
Q 003271 707 LDVETQVCRLK--L--QGHKNQVHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIH----ELSCTGNKFH 770 (835)
Q Consensus 707 wDl~t~~~i~~--l--~~h~~~I~sl~fspdg~~Lasgs-Dg-------~I~IwDl~t~~~~~~i~----~l~~~~~~V~ 770 (835)
.|..+++.+.. + ..|...|..+++.++|..++..- .+ .|.+++.... ...+. ....-...+-
T Consensus 143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~g 220 (305)
T PF07433_consen 143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIG 220 (305)
T ss_pred EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceE
Confidence 88888877765 4 23778899999999999888775 33 3455544331 11111 0123357899
Q ss_pred EEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 771 SCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 771 sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
+|++++++..+++++--| .+.+||..+++++....- ..+..++..+++ +++|.+.
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence 999999999887777654 999999999998855433 345667766655 6666554
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.84 E-value=5.8e-07 Score=91.71 Aligned_cols=220 Identities=8% Similarity=0.003 Sum_probs=150.3
Q ss_pred CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCce
Q 003271 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGAT 684 (835)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~ 684 (835)
...+|+.|+..|...+|...+..........|...|+-+.=.-+.+.-+..++.|.++++.++.-+...... .....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999999998776555555555544322211222333446777888888887654332222 23377
Q ss_pred EEEEecCCCEEEEEEcCCcEEEEECCCC-eEE-E-EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc--e
Q 003271 685 QMRFQPRLGRILAAAIENYISILDVETQ-VCR-L-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--C 758 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i-~-~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~--~ 758 (835)
++.+++++.+.++.+....|..|.+... +.+ . ........-.+..|+.....+|++. ||++.|||++...... .
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 8899999999999999999999988753 222 2 2233445567889999999999999 9999999999763211 1
Q ss_pred EEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEEcCCCcEE--------EeccCCC-CeeEEEEeCCCCEEEEEEC
Q 003271 759 IHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTENKTL--------TLSAHDK-LVSSLAASTVNGMVASASH 827 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~--~L~sgs~dg~I~IwDl~~~~~~--------~l~~h~~-~V~~la~spdg~~LaSgs~ 827 (835)
-.+-..|.+.+..|.|++.|. .|+..-.-+.+.+.|+++++-. ....|.. .|..-.|+.++..+.+.+.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 223345789999999998774 4566656679999999988744 1223333 3778888877765555544
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=2.4e-06 Score=105.87 Aligned_cols=274 Identities=11% Similarity=0.138 Sum_probs=174.1
Q ss_pred CCEEEEEEeCCCCEEEEEeC--CC--eEEEEEcCCC---eEEEEec-----cCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 556 SKVESCHFSPDGKLLATGGH--DK--KAVLWCTESF---TVKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~--Dg--~I~VWd~~t~---~~i~~l~-----~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
..+...+|......++++.. .. .|.+...... +.+..+. ...+.|.++.|.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35677777776554433332 22 2333322221 2333432 34568999999999999999999999999
Q ss_pred E----ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---------------CCeee--------
Q 003271 624 W----DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---------------NGSCA-------- 676 (835)
Q Consensus 624 W----Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---------------s~~~~-------- 676 (835)
+ +..+.. +.....-...|.+++|+||.+ +++..+.+++|.+-+.. ..+.+
T Consensus 102 ~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe 178 (928)
T PF04762_consen 102 VREDPDPDEDE--IEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE 178 (928)
T ss_pred EEccCCCCCce--eEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence 9 555433 444455567899999999987 45455556766663311 00000
Q ss_pred eE---------------------------eecCceEEEEecCCCEEEEEEc---C---CcEEEEECCCCeEEEEEcCCCC
Q 003271 677 GV---------------------------FKSGATQMRFQPRLGRILAAAI---E---NYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 677 ~~---------------------------~~~~i~~l~fsp~~~~ll~~s~---d---g~I~IwDl~t~~~i~~l~~h~~ 723 (835)
.. .......++|-.||.++++.+. . ..|+||+-+ |......+.-.+
T Consensus 179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g 257 (928)
T PF04762_consen 179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG 257 (928)
T ss_pred CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC
Confidence 00 1113456789999999998875 2 468899876 554444443334
Q ss_pred CeEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 724 QVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs--D--g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
--.+++|-|.|.+|++.. . ..|.+|.-+.-...+....+......|..+.|++++..|++...+ .|.+|-..+..
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYH 336 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYH 336 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCE
Confidence 445789999999999887 2 367777654433333333333456789999999999999887755 49999998877
Q ss_pred EE---Eec-cCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003271 800 TL---TLS-AHDKLVSSLAASTVNG-MVASASHDKCVKIW 834 (835)
Q Consensus 800 ~~---~l~-~h~~~V~~la~spdg~-~LaSgs~DG~V~IW 834 (835)
.. .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 54 222 2334456699999654 56666665666543
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.1e-08 Score=111.96 Aligned_cols=205 Identities=14% Similarity=0.264 Sum_probs=148.4
Q ss_pred EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (835)
Q Consensus 590 i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg 663 (835)
+..+.+|...|..++--.+.+.+++++.|++|++|.++... .+..++..|+.+|.++.|..+.+ .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35678999999998887788899999999999999987432 24567889999999999998754 45565 89
Q ss_pred cEEEEECCCCeeeeEee-----cCceEEEEec--CCCEEEEE-EcCCcEEEEECCCCeEEEEEc-----CCCCCeEEEEE
Q 003271 664 EIRYWSINNGSCAGVFK-----SGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 730 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~-----~~i~~l~fsp--~~~~ll~~-s~dg~I~IwDl~t~~~i~~l~-----~h~~~I~sl~f 730 (835)
.|.+||.--++.+.... +....+..-+ +...++++ +.+.+|+++|.+..+.+..++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776654221 2233333333 23344454 567899999999876655443 34456889999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EEcCCCcEE
Q 003271 731 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKTL 801 (835)
Q Consensus 731 spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I-wDl~~~~~~ 801 (835)
.+.|+.++++- .|.|.+.|.+++ +.+..+.........++ .|....|+....|.++.+ |...++...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 99999999887 999999999998 56665554333333332 355566777778888888 876665543
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.74 E-value=3e-08 Score=112.21 Aligned_cols=205 Identities=20% Similarity=0.274 Sum_probs=147.2
Q ss_pred EEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~-~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
...+.+|...|+.+-|.+.. ..|++++.|..|..||+.+.. .+..+..-......|+|+.....+++.+....|+|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 44577999999999999854 478999999999999998643 4444444445567899988655666667778899999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eE--eecCceEEEEecCCCEEEEEE--
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GV--FKSGATQMRFQPRLGRILAAA-- 699 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~--~~~~i~~l~fsp~~~~ll~~s-- 699 (835)
++.+..++..+++|...|..++|.......+.+++.|++|++||..+.... +. -+.++..-++.|-+.-.++--
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 999998899999999999999998765667789999999999998754322 21 123344455555543332221
Q ss_pred ---------cCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC----------CEEEEEe-CCeEEEEEcCC
Q 003271 700 ---------IENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 752 (835)
Q Consensus 700 ---------~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg----------~~Lasgs-Dg~I~IwDl~t 752 (835)
.++....|++.+ .++++.|.||...|....|-..+ --|++=+ |..+++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 122222333333 47889999999988777663321 2467777 99999998764
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.70 E-value=2.9e-06 Score=96.35 Aligned_cols=253 Identities=8% Similarity=0.058 Sum_probs=152.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC----------CeE-EEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~----------~V~-sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.++.|..+|.++++.+........ .+. .+.. ++..++.++.++.+..+|.++++...+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~- 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ- 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc-
Confidence 45777778889999999999998866543220 000 1111 345777888999999999998885332
Q ss_pred eecCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEE----Eec--CCCEEEEEEcCCcEEEEE
Q 003271 636 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR----FQP--RLGRILAAAIENYISILD 708 (835)
Q Consensus 636 ~~~h~~~V~s-l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~----fsp--~~~~ll~~s~dg~I~IwD 708 (835)
.... ..+.+ ..+. + . .++.+..++.|+.+|.++++.+..+......+. .+| .++.+++++.++.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 2222 22221 1222 2 3 444567789999999999998877654321110 011 245688888899999999
Q ss_pred CCCCeEEEEEcCCC----C---CeEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271 709 VETQVCRLKLQGHK----N---QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778 (835)
Q Consensus 709 l~t~~~i~~l~~h~----~---~I~sl~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg 778 (835)
..+++.+....... . ....+..+| .+..+++++ ++.+..+|..++ +.+-.... .....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG---~~~W~~~~--~~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG---QIVWKREY--GSVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC---CEEEeecC--CCccCcE--EEC
Confidence 99988776543110 0 011111122 233454455 999999999988 33332221 1111222 245
Q ss_pred CEEEEEEcCCeEEEEEcCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 779 PSLLVIGCYETLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 779 ~~L~sgs~dg~I~IwDl~~~~~~~-l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..|++++.++.|..+|..+++.+- ..... ....+..+. +.+|+.++.||.|++.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence 678899999999999999998762 21111 112222222 45677778888877654
No 299
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.68 E-value=1e-05 Score=90.55 Aligned_cols=257 Identities=14% Similarity=0.118 Sum_probs=154.5
Q ss_pred eCCCCEEEEEe---------CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 564 Spdg~~Lasgs---------~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877642 246789999999776644433 67789999999999999885 57899999876643222
Q ss_pred Eeec-------C---------CCCeEEEEEcCCCCcEEEEEeCCCc----------------------------------
Q 003271 635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSE---------------------------------- 664 (835)
Q Consensus 635 ~~~~-------h---------~~~V~sl~fsp~g~~ll~sgs~Dg~---------------------------------- 664 (835)
+..+ - -+.-..+-|+|+++.+++.--++..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2222 0 1223567899999887765544443
Q ss_pred -EEEEECCCCeeeeEe-e-------cCceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEEEcC-CCCCe---E
Q 003271 665 -IRYWSINNGSCAGVF-K-------SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H 726 (835)
Q Consensus 665 -I~iwDl~s~~~~~~~-~-------~~i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~l~~-h~~~I---~ 726 (835)
+.++|+.+++....- . .-+..+.|.+++..+++.-.+ -.+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 333444444332111 1 115677888888855554433 2477778877644333321 22332 2
Q ss_pred EEEEc-CCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEc
Q 003271 727 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 795 (835)
Q Consensus 727 sl~fs-pdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~d-----g~I~IwDl 795 (835)
.+.|. +++..++..+ +| .|++++...+ ....+......|.. +.|++++..|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 45554 6665555544 77 6666666654 34455555666744 6788888877766553 26777788
Q ss_pred C-CCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 796 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 796 ~-~~~~~~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
. .+....+.........+.|||++++++-.+
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 777777665554446999999999777544
No 300
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=3.6e-06 Score=86.08 Aligned_cols=229 Identities=14% Similarity=0.075 Sum_probs=149.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEE-EEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCC--CC
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHS--TT 642 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i-~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~--~~ 642 (835)
..+||.|+..|...+|...+.+.. .....|...|+-+.=..+ ...+..++.|.++++.+++.+... +..|. -.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---~~~h~~~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---FAVHNQNLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc---ceeeccccc
Confidence 448999999999999999865543 334445554433322222 335777889999999988754421 11222 33
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 716 (835)
Q Consensus 643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~--~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~ 716 (835)
+.++.++++++ +.++.++...|.+|.+.... .++... .+..+..|+.....++++..||.+.|||++......
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 88999999977 55566667889999886532 222222 346678899999999999999999999999653322
Q ss_pred -----EEcCCCCCeEEEEEcCCCC--EEEEEe-CCeEEEEEcCCCCCcceEEEee-----cCCCceEEEEEeCCCCEEEE
Q 003271 717 -----KLQGHKNQVHSVCWNTSGE--YLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 717 -----~l~~h~~~I~sl~fspdg~--~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-----~~~~~V~sv~fspdg~~L~s 783 (835)
.-..|.+.+..+.|++.|. +|+... -+.+.|.|+++......+.... .....|....|+.++..+.+
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 2234889999999998663 333333 6789999999985544333221 11233667777777776666
Q ss_pred EEcCCeEEEEEcCCCcE
Q 003271 784 IGCYETLELWNMTENKT 800 (835)
Q Consensus 784 gs~dg~I~IwDl~~~~~ 800 (835)
.+.+ .+.-|++.....
T Consensus 320 ~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 320 KNEL-QGAEYNILSRSR 335 (344)
T ss_pred ccch-hhheeeccccce
Confidence 6554 344555544433
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=4.6e-07 Score=92.10 Aligned_cols=199 Identities=12% Similarity=0.171 Sum_probs=125.1
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
.+..++++..+..+.++ ..++.+....|....+ ...++++..|.++-.+-+.+--+..++++..||.+.+++.
T Consensus 46 ~~~~lf~~e~~~~~ss~-----g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 46 AEYILFTGETSSQIISL-----GKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred hhheeecccchhheeee-----ccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 34566777777777766 2222233333333322 3345555566666556666666778999999999999998
Q ss_pred CCCeE-EEEeccCCCCeEEEEECCCCCEEEEEEC-----CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 585 ~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
+.... ...+..-...-.+.++...++.|.++.. -+..++|++...+....... ....|.+++-+|.-.+++++
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEE
Confidence 75211 1111111111122233334444444321 23466777765443222222 22349999999998999999
Q ss_pred EeCCCcEEEEECCCCeee----eEeecCceEEEEecCC-CEEEEEEcCCcEEEEECCC
Q 003271 659 CDNNSEIRYWSINNGSCA----GVFKSGATQMRFQPRL-GRILAAAIENYISILDVET 711 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~----~~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t 711 (835)
|+.||.+-+||.+..... ...+.++..+.|+|.. ..|++++.||.+.-||..+
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999987432 2345678899999964 6899999999999999875
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.65 E-value=2.4e-07 Score=95.94 Aligned_cols=234 Identities=18% Similarity=0.289 Sum_probs=147.9
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce----eEEeecCC------------CCeEEEEEcCC-CCcEEEE
Q 003271 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 658 (835)
Q Consensus 596 h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~----~~~~~~h~------------~~V~sl~fsp~-g~~ll~s 658 (835)
..+.|++|.|...|.+|++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +..-+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999986654321 12234443 35777887654 3444556
Q ss_pred EeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEE---------cCCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003271 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLKLQGHKNQVHSVC 729 (835)
Q Consensus 659 gs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s---------~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~ 729 (835)
.+.|.+|++|.+.............+.-.-+|-++-+.+.. .|..|..+ .+...-..|...|.++.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence 67799999999975432211111111111122221111100 00011110 11111235888899999
Q ss_pred EcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEE--
Q 003271 730 WNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-- 801 (835)
Q Consensus 730 fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~-----~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-- 801 (835)
|+.|...++++.|=.|.+|++.-......+..+..|. ..|++..|+|.. ..+...+..|.|++-|++...+.
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9999999999889999999987654333444444443 457888999975 44556677889999999843211
Q ss_pred -------Ee--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 802 -------TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 802 -------~l--------~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+ .+-...|.++.|+++|++|++-+. -+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 122356889999999999998765 4899997
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.63 E-value=1.8e-05 Score=82.25 Aligned_cols=225 Identities=17% Similarity=0.187 Sum_probs=132.5
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCC--eEEEEeccC---CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 561 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~i~~l~~h---~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
++.+.||++||+.- |..|.|=..++. .++.+.... ...=.-++|+||+.+||.+...|+|++||+..... ..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL--FV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee--EE
Confidence 56788999888765 677777655431 222222222 22346799999999999999999999999985332 22
Q ss_pred ee-------cCCCCeEEEEEcCCC-----CcEEEEEeCCCcEEEEECCC-----CeeeeEe------ecCceEEEEecCC
Q 003271 636 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVF------KSGATQMRFQPRL 692 (835)
Q Consensus 636 ~~-------~h~~~V~sl~fsp~g-----~~ll~sgs~Dg~I~iwDl~s-----~~~~~~~------~~~i~~l~fsp~~ 692 (835)
+. .-...|..+.|.+.. ...|+.-..+|.++-|-+.. ....+.+ +.++.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 11 123456777776532 22344555678777776532 2333333 3469999999999
Q ss_pred CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEE--EEEe-CC------eEEEEEcCCCCCcceEEEee
Q 003271 693 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL--ASVS-DE------LVRVWSIGSGSKGECIHELS 763 (835)
Q Consensus 693 ~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~L--asgs-Dg------~I~IwDl~t~~~~~~i~~l~ 763 (835)
+.|++|+....= ++. -......+++-..-.+..+. ++.. |+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 998888764320 000 00011122222211111111 0111 11 1123333221 1222223
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.....|..+..+|||..|++...+|.|.+|++..-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 35678999999999999999999999999999876655
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.8e-06 Score=92.57 Aligned_cols=249 Identities=14% Similarity=0.146 Sum_probs=148.6
Q ss_pred EEEEEcCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 003271 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (835)
Q Consensus 579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 657 (835)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++.. ++..+..+ ..+++++|+-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 66777667776677778889999999999866 78889999999999999865 46666666 78999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeee-Ee-----ecCceEEE------EecCCCEEEEEEcCCcEEEEECC----CCeEEEEEcCC
Q 003271 658 SCDNNSEIRYWSINNGSCAG-VF-----KSGATQMR------FQPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 721 (835)
Q Consensus 658 sgs~Dg~I~iwDl~s~~~~~-~~-----~~~i~~l~------fsp~~~~ll~~s~dg~I~IwDl~----t~~~i~~l~~h 721 (835)
+|..+|.|.|||++..+-.. .+ ..++..++ ..+.++.+++...+ +..|++. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998754321 11 12233322 33445555555443 2233332 222222222 2
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CC---eEE---E-EEcCCCCCcceEEEeecC-CCce------EEEEEeCCCCEEEEEE
Q 003271 722 KNQVHSVCWNTSGEYLASVS--DE---LVR---V-WSIGSGSKGECIHELSCT-GNKF------HSCVFHPTFPSLLVIG 785 (835)
Q Consensus 722 ~~~I~sl~fspdg~~Lasgs--Dg---~I~---I-wDl~t~~~~~~i~~l~~~-~~~V------~sv~fspdg~~L~sgs 785 (835)
.+...++.+.+..+.++... +. .++ . -|..++. .....-..+ +.+- ..+.-.++..+|+..+
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG 407 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc--eeeeecccccCCcccccccccceeccccccEEEEec
Confidence 33444445544334443332 11 111 1 1111111 000111111 1110 1122234455555444
Q ss_pred c-CCeEEEEEcCCCcEEEeccCCCCeeEEEEeC-CC-CEEEEEECCCcEEEeC
Q 003271 786 C-YETLELWNMTENKTLTLSAHDKLVSSLAAST-VN-GMVASASHDKCVKIWK 835 (835)
Q Consensus 786 ~-dg~I~IwDl~~~~~~~l~~h~~~V~~la~sp-dg-~~LaSgs~DG~V~IWd 835 (835)
. .+.+.+||..+.+++.......+|.+++... ++ .+|++-. |..++||+
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred CCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 4 3489999999999986666678898888654 33 3666554 55788764
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.61 E-value=1.1e-05 Score=84.24 Aligned_cols=209 Identities=12% Similarity=0.047 Sum_probs=131.4
Q ss_pred CCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCE
Q 003271 618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGR 694 (835)
Q Consensus 618 Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ 694 (835)
+|+|..||..+++.....-... .....+..+ +++. .+++++.++.|+.||..+|+.+..+... +... ....++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeecccc
Confidence 6889999998887643332211 122222222 2334 3445678999999999999988776632 2222 2445678
Q ss_pred EEEEEcCCcEEEEECCCCeEEEEE-cCCC---CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-
Q 003271 695 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 768 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~i~~l-~~h~---~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~- 768 (835)
+++++.++.|+.+|..+++.+... .... ..........++..++++. ++.|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888999999999999998884 3221 1122222333377777777 999999999998 555555443322
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 769 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 769 ---------V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222344 78888888854444999999663 2223334332 346677888888999999886
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=3e-08 Score=113.90 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=150.1
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-cE
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 665 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-~I 665 (835)
.+..++|..|+...+|++|+-+.++|++|+..|.|++|++.++.. ...+.+|.+.|+.+.-+.+|...+.+++... ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 455667788999999999999999999999999999999999875 6778899999999999999987776666555 67
Q ss_pred EEEECCC-CeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE-cC---CCCCeEEEEEcCCCCEEEEE
Q 003271 666 RYWSINN-GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 666 ~iwDl~s-~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l-~~---h~~~I~sl~fspdg~~Lasg 740 (835)
.+|++.+ +...+.| .+..++.|+.....-+.|+......+||+.++.+..++ .+ ....-.++.|+|+.++|+-
T Consensus 1170 aLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred HHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence 7899865 3333333 34567778777666677777788999999998766553 22 2223367889999887763
Q ss_pred eCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 741 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 741 sDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
|| .+||++.. ..|+.+.... ....-.|+|.|..+++-+ .|||+++-+.+
T Consensus 1248 -dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 -DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred -Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 44 58999887 5555554332 223347999999888754 68999887655
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.56 E-value=1.3e-05 Score=96.55 Aligned_cols=242 Identities=12% Similarity=0.143 Sum_probs=150.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
.+.|.++.|..+..-++.+..+|.|.+.|.++.... ....-...|.+++|+||...++..+.++++.+-+..=.-...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 367999999999999999999999999988875433 2233457899999999999999999888877654321000001
Q ss_pred Eee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEeecCceEEEEecCCCEEEEEEc----C-Cc
Q 003271 635 TFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFKSGATQMRFQPRLGRILAAAI----E-NY 703 (835)
Q Consensus 635 ~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~~~i~~l~fsp~~~~ll~~s~----d-g~ 703 (835)
.+. ...+....+-|-.....+ -|+ .|.....+....+.. .....+-+.+.|--+|.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 110 011222233333221111 111 121111111111110 012344667899999888888442 3 78
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~ 779 (835)
|+|||-+ +..-..-.....--.+++|-|.|..+++.. |+.|.+|.-+.-........+......+..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 433222222334456899999999998864 66799998665433344434444445589999999999
Q ss_pred EEEEE---EcCCeEEEEEcCCCcEE
Q 003271 780 SLLVI---GCYETLELWNMTENKTL 801 (835)
Q Consensus 780 ~L~sg---s~dg~I~IwDl~~~~~~ 801 (835)
.|++. .....|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 88884 33446999998876644
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.53 E-value=5.3e-05 Score=78.89 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=110.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-------CCCCeEEEEECCC------CCEEEEEECCCeEEEE
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW 624 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-------h~~~V~sv~fspd------g~~Latgs~Dg~I~IW 624 (835)
=.-++||||+.+||.+...|+|+|||+.... +..+.. -...|..+.|.+- ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 4568999999999999999999999987533 333322 2345667777542 2256677788888888
Q ss_pred ecCCC---Cc-eeEEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEE--
Q 003271 625 DTENP---DY-SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRI-- 695 (835)
Q Consensus 625 Dl~t~---~~-~~~~~---~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~l-- 695 (835)
-+..+ +. ....+ ..+...|.++.|+|..+.++++|.....-.. ......++++-++-.+..+.
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~--------s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM--------SKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc--------ccccccCceEEEEcCCCCcEEE
Confidence 76432 11 12222 2346789999999997655655544332100 01111222222222111111
Q ss_pred EEEEcCCc------EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271 696 LAAAIENY------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 696 l~~s~dg~------I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~ 753 (835)
++...|+. ..+|.+-+.+...........|..+..+|||.+|++.. +|.|.+|++.+-
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 11111111 12233222222222223567899999999999999999 999999999876
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=1.1e-06 Score=89.29 Aligned_cols=238 Identities=12% Similarity=0.161 Sum_probs=133.2
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE------------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i------------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
|+.+.|+.+ ..|+++..++.+..+....+.++ +.+..|.++-.+-+.+--+..++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555556543 35666666666655544333322 22323433333333333466789999999999998
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEE
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.+......+........-.+.++...++ ++.++ .+-.|+.. +..+
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~----~~g~~n~~------------------------------d~~~ 162 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSG----GCGNWNAQ------------------------------DNFY 162 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecC----CcceEeec------------------------------ccee
Confidence 8752111111111001111111222222 12111 12222221 3445
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEE
Q 003271 706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLL 782 (835)
Q Consensus 706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las-gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~ 782 (835)
+|+++..+....-......|+++|-+|.-..+++ |+ ||.+.+||.+... .....+..|+.+++.+-|+|.. ..|+
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCCchhee
Confidence 5555533222211112234889999887655544 45 8999999999873 4566778899999999999964 6799
Q ss_pred EEEcCCeEEEEEcCCCcEE---------------------E----eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 783 VIGCYETLELWNMTENKTL---------------------T----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 783 sgs~dg~I~IwDl~~~~~~---------------------~----l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+++.||.+.-||..+.-+- . +......|+++. --|..|++|++-+.|++++
T Consensus 241 t~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD--V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 241 TCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD--VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeee--ccCceEEeccccceEEEec
Confidence 9999999999998742211 0 001111233333 3477899999999998874
No 310
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.4e-06 Score=90.58 Aligned_cols=244 Identities=14% Similarity=0.139 Sum_probs=150.4
Q ss_pred EEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRV 623 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~I 623 (835)
.....+.+|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..| ..+++++|.-|. .+|+.|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33457788999999999999877 7888999999999999999999888877 789999998864 56777788999999
Q ss_pred EecCCCCceeEEeec--CCCCeEEEEEcCCC-----CcEEEEEeCCCcEEEEECCCC----eeeeEee--cCceEEEEec
Q 003271 624 WDTENPDYSLRTFTG--HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINNG----SCAGVFK--SGATQMRFQP 690 (835)
Q Consensus 624 WDl~t~~~~~~~~~~--h~~~V~sl~fsp~g-----~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~--~~i~~l~fsp 690 (835)
||++..+..+..+.+ ...+|..|+.-+.+ ..+++.... .+..|++.-. .++..+. +...++.+++
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 999977654444433 23455555443321 123333332 3455665422 1222222 2244455556
Q ss_pred CCCEEEEEEcCC-------cEE-EEECCCCeEEEEEcC-C-CCCe------EEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003271 691 RLGRILAAAIEN-------YIS-ILDVETQVCRLKLQG-H-KNQV------HSVCWNTSGEYLASVS--DELVRVWSIGS 752 (835)
Q Consensus 691 ~~~~ll~~s~dg-------~I~-IwDl~t~~~i~~l~~-h-~~~I------~sl~fspdg~~Lasgs--Dg~I~IwDl~t 752 (835)
..+++++....+ .|- -.|..++..+..... + .+.- ..+.-.++.++|+..+ .+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 556766655431 111 123334444432221 1 1111 1122235567776655 45999999998
Q ss_pred CCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEEcC
Q 003271 753 GSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 753 ~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs~dg~I~IwDl~ 796 (835)
. +.+.++... .+|..++... ++.-++..-.|..++||..+
T Consensus 421 ~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 421 F---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred h---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 7 666666543 6777776543 44445555566678887654
No 311
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.50 E-value=1.1e-05 Score=91.90 Aligned_cols=222 Identities=12% Similarity=0.136 Sum_probs=126.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 003271 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (835)
Q Consensus 595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~ 674 (835)
...-....+.++|++++++++ .||...||.....+ ... .+.-..++|.+.++ +++-.....|.++.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 344567899999999999884 57778888743322 111 13345678888543 5566668889997433333
Q ss_pred eeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC-
Q 003271 675 CAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG- 753 (835)
Q Consensus 675 ~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~- 753 (835)
....+..+...-.+.. |. ++....++.|.+||+.+++.+..+.. ..|..|.|+++|.+++..++..+.|++....
T Consensus 101 ~~k~i~~~~~~~~If~-G~-LL~~~~~~~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG-GN-LLGVKSSDFICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp TT-----SS-EEEEE--SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred cceEEcCCcccceEEc-Cc-EEEEECCCCEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 3334444433333333 44 45555556899999999999999873 3489999999999999999888888876532
Q ss_pred -------CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 754 -------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 754 -------~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
.....+..+......|.+.+|..+ .++..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|+...
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID 251 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence 001133344433678899999877 44444444 7776 56677666655567788888888778899999
Q ss_pred CCCcEEEe
Q 003271 827 HDKCVKIW 834 (835)
Q Consensus 827 ~DG~V~IW 834 (835)
.|+.|..+
T Consensus 252 r~~~v~~~ 259 (443)
T PF04053_consen 252 RDGNVISY 259 (443)
T ss_dssp TT--EEEE
T ss_pred CCCCEEEE
Confidence 99888765
No 312
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.49 E-value=2.3e-05 Score=90.71 Aligned_cols=255 Identities=11% Similarity=0.084 Sum_probs=149.8
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCeEEEEecc-CCCCeEEEE-------------------ECCCCCEEEE-EECCCeEE
Q 003271 565 PDGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVR-------------------FSPSLSRLAT-SSADRTVR 622 (835)
Q Consensus 565 pdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~-------------------fspdg~~Lat-gs~Dg~I~ 622 (835)
.||+||+.-.. ...|-..+++..++-..++- ....+..++ +.+||+.+.. .-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888888764 55677777776655443321 111222222 3345544422 22345677
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEE
Q 003271 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAA 699 (835)
Q Consensus 623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs---~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s 699 (835)
+.|.++.+.......+ .....++++++++.+++++. ...++..-+..+...+..+.-. ....+.++|++.++
T Consensus 219 vID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-~iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-RIEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-HHHHhhhCCCEEEE--
Confidence 7777765432232222 24466788999887777762 2234444444332222222111 01134456676665
Q ss_pred cCCcEEEEECCC----C-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------cceEEEee
Q 003271 700 IENYISILDVET----Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------GECIHELS 763 (835)
Q Consensus 700 ~dg~I~IwDl~t----~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~---------~~~i~~l~ 763 (835)
.++.|.++|.++ + ..+..+. -....+.+.++|||+++++++ +.+|.|+|+.+.+. ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999998 3 4444443 567788999999999999888 88999999987531 01223333
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC----------CcEE-EeccC-----CCCeeEEEEeCCCCEEEEEE
Q 003271 764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAH-----DKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~----------~~~~-~l~~h-----~~~V~~la~spdg~~LaSgs 826 (835)
. +......+|.++|....+.--|..|..||+.. ..++ ++.-| ......=.-.+||++|++.+
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 2 44456678999998777777899999999876 2333 23222 22222222367888888765
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.49 E-value=1.9e-06 Score=92.71 Aligned_cols=157 Identities=10% Similarity=0.125 Sum_probs=108.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----eEEEEeccCCCCeEEEEECCCCCEEEEE---ECCCeEEEEecCCCC
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATS---SADRTVRVWDTENPD 630 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~i~~l~~h~~~V~sv~fspdg~~Latg---s~Dg~I~IWDl~t~~ 630 (835)
+..+.+++++++||++..++...++++... +++.... -...-+++.|..+...+..+ +....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 455667888999999988888777776543 2332222 12223444454444444444 3445566666554
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
.+.+...+|-+-++.|+|+||+. +|++++.|..|++-....-..+..+- .-+..+++.++ ..|++++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 33577789999999999999975 77799999999998776655554443 22777777665 55899999999999
Q ss_pred EECCCCeEEEEEc
Q 003271 707 LDVETQVCRLKLQ 719 (835)
Q Consensus 707 wDl~t~~~i~~l~ 719 (835)
||+++++.+..+.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999999886553
No 314
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.48 E-value=0.00011 Score=79.43 Aligned_cols=256 Identities=11% Similarity=0.129 Sum_probs=162.1
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC----------CCeEEEEecCCCCceeEEeecC--C----
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 640 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~~~~~~~h--~---- 640 (835)
+.|+|+|.++++.+..+.. +..-.+..+|+++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877753 33445778999999887643 4479999998865322211111 1
Q ss_pred CCeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEE-
Q 003271 641 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLK- 717 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~- 717 (835)
.....+.++.+++.+++.- +---.|.|.|+...+.+..+..+-+...+-.....+.+.|.||.+..+.+. .++...+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 1233467788887666543 334579999999999999888776555554444678899999999998887 4444322
Q ss_pred ---EcCCCCCeE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC----------CCceEEEEEeCCCCEEE
Q 003271 718 ---LQGHKNQVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 718 ---l~~h~~~I~-sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~----------~~~V~sv~fspdg~~L~ 782 (835)
|.....++. .-.+...+..++..+ +|.|+-.|+.... ......+... .+...-+++++....|+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 222222222 334444444444445 9999999987653 1222222211 12234467887776666
Q ss_pred EEEcC--------C--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003271 783 VIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 835 (835)
Q Consensus 783 sgs~d--------g--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~IWd 835 (835)
+.-.. + .|.+||+.+++.+....-+..+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 64321 1 78899999999985544456788999999877 665544 578999986
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=0.00024 Score=72.77 Aligned_cols=256 Identities=11% Similarity=0.083 Sum_probs=135.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s 645 (835)
-|++++.|+..|.+++.+.++|+....+.....-=......+++..+..++.|++.+..|..+... +...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence 467899999999999999999987766643322112234566888999999999999999998664 3333333233333
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEe--ecCce--EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc
Q 003271 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVF--KSGAT--QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 719 (835)
Q Consensus 646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~--~~~i~--~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~ 719 (835)
-++.|-...++ .+...|.|.--..+.+... ..+ ..++. .++. +..+..++.||.+.-+| ..++.+..+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 44455223333 3444566665555554221 111 11211 1222 23466667777777777 5566666544
Q ss_pred CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEEcCCCCCcceEEEeecCCCceEEEEEe-C---CCCEEEEE
Q 003271 720 GHKNQVHS-VCWN-TSGEYLASVSDE---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-P---TFPSLLVI 784 (835)
Q Consensus 720 ~h~~~I~s-l~fs-pdg~~LasgsDg---------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs-p---dg~~L~sg 784 (835)
..++|.. -+-+ |....|..+.++ .-.+|...++ ...+...... ..+.++ + ..++|..+
T Consensus 216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYLSPK---LRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEeCcc---cceeccCCCCcchhhhhhh
Confidence 2333321 1111 332333333322 2335555544 1111111100 011111 1 13457778
Q ss_pred EcCCeEEEEEcCCCcEEEeccCCCCe---eEEEE------eC--CCCEEEEEECCCcEEEeC
Q 003271 785 GCYETLELWNMTENKTLTLSAHDKLV---SSLAA------ST--VNGMVASASHDKCVKIWK 835 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~~~l~~h~~~V---~~la~------sp--dg~~LaSgs~DG~V~IWd 835 (835)
+.||++.|.-++.. +.....|.+.+ ..+.+ +| -+..|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence 88999888844322 22223333322 22211 12 024577888999999987
No 316
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.46 E-value=6.3e-05 Score=87.88 Aligned_cols=256 Identities=10% Similarity=0.079 Sum_probs=149.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC------CeE--EEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~------~V~--sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~ 638 (835)
+..+++++.++.|+.+|..+++.+..+..... .+. .+.+. ++..++.++.++.|+.+|.++++...+ +..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK-FGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee-ecC
Confidence 33566777789999999999998877643322 010 11111 225788888999999999999885333 221
Q ss_pred CCCC-----e-EEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCeeeeEeecCc--------------------
Q 003271 639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKSGA-------------------- 683 (835)
Q Consensus 639 h~~~-----V-~sl~fsp~g~~ll~sgs---------~Dg~I~iwDl~s~~~~~~~~~~i-------------------- 683 (835)
.... + .+..+.. . +++.++ .++.|+.+|..+++.+..+....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 1110 1 1112221 2 333332 36889999999999887664310
Q ss_pred ----eEEEEecCCCEEEEEEcCC------------------cEEEEECCCCeEEEEEcCCCCCeE------EEEEc----
Q 003271 684 ----TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQVH------SVCWN---- 731 (835)
Q Consensus 684 ----~~l~fsp~~~~ll~~s~dg------------------~I~IwDl~t~~~i~~l~~h~~~I~------sl~fs---- 731 (835)
....+.+.++.+++++.++ .|.-+|+++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 1234555678888887665 799999999999988652111110 01111
Q ss_pred CCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 003271 732 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 789 (835)
Q Consensus 732 pdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg------------------s~dg~ 789 (835)
-++. ++++++ +|.+..+|..++ +.+-..... ...++.+| ..++++ ..+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG---~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTG---KLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCC---cEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 2333 466666 999999999998 444333211 11123333 233332 23578
Q ss_pred EEEEEcCCCcEEEeccCC---------CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 790 LELWNMTENKTLTLSAHD---------KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 790 I~IwDl~~~~~~~l~~h~---------~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|.-+|+.+++.+-..... .....-...-.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 999999999887222111 1111111112456788888899888764
No 317
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.45 E-value=2e-07 Score=62.59 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhc
Q 003271 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (835)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~ 36 (835)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=5.8e-06 Score=96.49 Aligned_cols=260 Identities=17% Similarity=0.222 Sum_probs=170.5
Q ss_pred eEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCC-CCCCCcccc------cccccCCCceeEEEEEecC-C
Q 003271 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVG------RSAEVGKGFTFTEFQLIPA-S 554 (835)
Q Consensus 483 s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~-~~~~~~~~~------~~~~~~~g~~~~~i~~l~g-H 554 (835)
+.+.+.....| .+++..++.++.++-.|+..+.+..++... ....+-.+- +......+...-....++. -
T Consensus 45 ~~L~~~~~~~G--~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~i~~ls~~alr~~~ 122 (1118)
T KOG1275|consen 45 AELISVGASYG--TVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESGIFTLSKTALRATT 122 (1118)
T ss_pred cceeeeccccc--cccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhhheeeeHHHhhhhh
Confidence 44444444444 677888888999888999988888874432 111111110 1111111110000011100 0
Q ss_pred CCCEEEEEE---e---------CCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271 555 TSKVESCHF---S---------PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (835)
Q Consensus 555 ~~~V~sl~f---S---------pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~ 622 (835)
...+....| + -++..++.|+.-..+..+|+.+.+..+...-....|+-++. +++++++|...|+|.
T Consensus 123 r~gl~~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~ 200 (1118)
T KOG1275|consen 123 RQGLPVFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVF 200 (1118)
T ss_pred ccCceeecccCCCHHHHHHHhccCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEE
Confidence 001111111 1 13456777888888999999998887776555545655554 678999999999999
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEee--cCceEEEEecC
Q 003271 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFK--SGATQMRFQPR 691 (835)
Q Consensus 623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~---------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~ 691 (835)
+-|..+.+. ++++..|.+.|.+++.. |+ ++++|+. |..|+|||++..+.+..+. .+..-+.|+|.
T Consensus 201 LrD~~s~~~-iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps 276 (1118)
T KOG1275|consen 201 LRDPNSFET-IHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS 276 (1118)
T ss_pred eecCCcCce-eeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc
Confidence 999998764 89999999999988876 33 6667764 4568999999877665443 23455677776
Q ss_pred C-CEEEEEEcCCcEEEEE---CCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003271 692 L-GRILAAAIENYISILD---VETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 750 (835)
Q Consensus 692 ~-~~ll~~s~dg~I~IwD---l~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl 750 (835)
- ..+++++..|.+.+.| +.+. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus 277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 4 5677788889999999 4333 23344444556699999999999999999 999999973
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=6.7e-06 Score=95.95 Aligned_cols=175 Identities=12% Similarity=0.168 Sum_probs=129.5
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEeecCc-eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271 655 LLCSCDNNSEIRYWSINNGSCAGVFKSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i-~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd 733 (835)
.++.|+....+..+|+++.+..+...... .+.....++..+++|...|+|.+-|.++.+.++++..|.+.|..+. -.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~ 226 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQ 226 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--cc
Confidence 45567777788899999888776655332 2233344567888999999999999999999999999999997665 46
Q ss_pred CCEEEEEe----------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEc---CCCc
Q 003271 734 GEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TENK 799 (835)
Q Consensus 734 g~~Lasgs----------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl---~~~~ 799 (835)
|+.|++|+ |..|+|||++.... +..+..+.+ ..-+.|+|.- ..+++++..|...+.|. .+..
T Consensus 227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred CCeEEEeecccccccccccchhhhhhhhhhhc---cCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 88888876 33689999998733 333222222 2556788865 46888899999999983 3322
Q ss_pred --EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 800 --TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 800 --~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
...+......+..+++++++..++.|..+|.|.+|-
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 123334455699999999999999999999999993
No 320
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.37 E-value=0.00071 Score=77.38 Aligned_cols=241 Identities=15% Similarity=0.099 Sum_probs=138.8
Q ss_pred EEEEEEeCCCCEEEEE-eCC----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC-----------eE
Q 003271 558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (835)
Q Consensus 558 V~sl~fSpdg~~Lasg-s~D----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg-----------~I 621 (835)
+..+++||||++||.+ +.. ..|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998865 333 359999999998775321111 122399999988877665443 37
Q ss_pred EEEecCCCCce-eEEeecCCCC--eEEEEEcCCCCcEEEEEeCC---CcEEEEECCCC-----eeeeEee--cCceEEEE
Q 003271 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFK--SGATQMRF 688 (835)
Q Consensus 622 ~IWDl~t~~~~-~~~~~~h~~~--V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~-----~~~~~~~--~~i~~l~f 688 (835)
++|++.+.... ...+...... ...+..+++++.+++..... ..|++.|+..+ ....... ..+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 3344443333 56888999999888766544 35888888874 2222222 22222222
Q ss_pred ecCCCEEEEEEc----CCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcc
Q 003271 689 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 757 (835)
Q Consensus 689 sp~~~~ll~~s~----dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~ 757 (835)
+. ++.+++.+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|++|++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 22 555555443 3578788888664 2334444555433333334455566554 55 8999999822 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCcEEEe
Q 003271 758 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 803 (835)
Q Consensus 758 ~i~~l~~-~~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l 803 (835)
....+.. ..+.|..+...++++.+...-.+ .+|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 3333332 23445666656666554443332 3899999999887644
No 321
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00049 Score=77.83 Aligned_cols=248 Identities=11% Similarity=0.129 Sum_probs=171.8
Q ss_pred EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEE
Q 003271 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLL 656 (835)
Q Consensus 579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll 656 (835)
+.+++..+......+..+. ....+.+.+++..+.... ....+.+.+... .. ......-. ..-..+++++.+..++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~-~~~~~~~g~~~p~~i~v~~~~~~vy 89 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NT-VTQSLSVGGVYPAGVAVNPAGNKVY 89 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ce-eeeeccCCCccccceeeCCCCCeEE
Confidence 6677766666665554443 556778888885544443 333455555442 21 12211111 3456788899988888
Q ss_pred EEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEc---CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271 657 CSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWN 731 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~---dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs 731 (835)
+....+..|.+.|..+.+....... ....++++++++.++++.. ++.+.+.|..+.+.+.....-..+ ..++++
T Consensus 90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~ 168 (381)
T COG3391 90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD 168 (381)
T ss_pred EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC
Confidence 8888889999999888887776653 3678999999999888877 689999999998888775433334 889999
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCCCCcceEE-E---eecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEE
Q 003271 732 TSGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLT 802 (835)
Q Consensus 732 pdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~-~---l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~ 802 (835)
|+|..++.+. ++.|.++|.... .... . ..........+.+.+++.++++..... .+.+.|..++....
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~---~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGN---SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCc---ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 9999887777 889999997665 2221 1 122344567889999999887776654 99999999988875
Q ss_pred ec-cCCC-CeeEEEEeCCCCEEEEEECC-CcEEE
Q 003271 803 LS-AHDK-LVSSLAASTVNGMVASASHD-KCVKI 833 (835)
Q Consensus 803 l~-~h~~-~V~~la~spdg~~LaSgs~D-G~V~I 833 (835)
.. .-.. ....+.++|+|+.+...... +.|.+
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 42 2222 56778899999987776433 44443
No 322
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.33 E-value=0.0011 Score=73.14 Aligned_cols=266 Identities=14% Similarity=0.098 Sum_probs=136.8
Q ss_pred EEeCCCCEEEEEe-CCC--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271 562 HFSPDGKLLATGG-HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 562 ~fSpdg~~Lasgs-~Dg--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~ 638 (835)
+|.+||+.|+.++ .|| .+.+.|+++++......+-........++++.+.|+-......|+-.|+.+.+. ...+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 6788997655554 454 566778888877755543323333566788888887766667899999998764 344554
Q ss_pred CCCCeEEEEEc--CCCCcEEEEEeC----------------------CCcEEEEECCCCeeeeEeecC--ceEEEEecCC
Q 003271 639 HSTTVMSLDFH--PSKEDLLCSCDN----------------------NSEIRYWSINNGSCAGVFKSG--ATQMRFQPRL 692 (835)
Q Consensus 639 h~~~V~sl~fs--p~g~~ll~sgs~----------------------Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~ 692 (835)
....+-...|. .++. .++..-. ...|...|+.+++....+... +..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 55555445553 3333 3332211 135677788888876666654 6889999998
Q ss_pred CEEEEEEcCCc-----EEEEECCC-CeEEEEEcCCC--CCeEEEEEcCCCCEEEEEe---C---CeEEEEEcCCCCCcce
Q 003271 693 GRILAAAIENY-----ISILDVET-QVCRLKLQGHK--NQVHSVCWNTSGEYLASVS---D---ELVRVWSIGSGSKGEC 758 (835)
Q Consensus 693 ~~ll~~s~dg~-----I~IwDl~t-~~~i~~l~~h~--~~I~sl~fspdg~~Lasgs---D---g~I~IwDl~t~~~~~~ 758 (835)
..+++-|.+|- -+||-+++ +.....+..+. ..+..=-|.+||..|.--+ . ..|.-+|+.++.. ..
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence 88888776541 25554442 33333333332 2344457899998776533 2 2677778877632 11
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEEcCCCcEEEeccCCC-----------Cee
Q 003271 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK-----------LVS 811 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg----------------~I~IwDl~~~~~~~l~~h~~-----------~V~ 811 (835)
+... ....-+-.++++..++-=+.|. -|+++++..+....+..|.. .=.
T Consensus 279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2111 1334455578888554433331 56778888877654444421 124
Q ss_pred EEEEeCCCCEEE-EEECCCcEEEe
Q 003271 812 SLAASTVNGMVA-SASHDKCVKIW 834 (835)
Q Consensus 812 ~la~spdg~~La-Sgs~DG~V~IW 834 (835)
...|+||+++|+ ++..+|...||
T Consensus 355 hp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCccCCCCCEEEEECCCCCCccEE
Confidence 678999999665 55567776665
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=9.1e-05 Score=86.58 Aligned_cols=205 Identities=15% Similarity=0.255 Sum_probs=139.6
Q ss_pred EECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 003271 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 673 (835)
Q Consensus 604 ~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~----- 673 (835)
+|++.+..++.|+.+|.|.+++-.- ..++.+..+...|...-|.-++..++++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3677888999999999888876442 224666666666444445555556776766554 5899999643
Q ss_pred -eee---eEee-------cCceEEEEecCCCEEEEEEcCCcEEEEECC--C--CeEEEEEcCCCCCeEEEEEcCCCCE-E
Q 003271 674 -SCA---GVFK-------SGATQMRFQPRLGRILAAAIENYISILDVE--T--QVCRLKLQGHKNQVHSVCWNTSGEY-L 737 (835)
Q Consensus 674 -~~~---~~~~-------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~--t--~~~i~~l~~h~~~I~sl~fspdg~~-L 737 (835)
.++ +.+. .++++++++.+-..+++|-.+|.|..+.-+ . +...........+|+.+.+..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 1221 347889999998999999999999998432 1 2222222235679999999998877 4
Q ss_pred EEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE-EEec-cCCCCeeEE
Q 003271 738 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLS-AHDKLVSSL 813 (835)
Q Consensus 738 asgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~-~~l~-~h~~~V~~l 813 (835)
++++...|.+|.+... . .....+..++..+.|..+++....+++++. ..|++|+...... ..+. +|...+..+
T Consensus 188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 5555788999999843 2 345557788889999999887664555544 4799999876553 3555 666554433
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.6e-06 Score=92.47 Aligned_cols=205 Identities=15% Similarity=0.158 Sum_probs=146.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC--CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECC
Q 003271 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN 671 (835)
Q Consensus 595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~ 671 (835)
-|.+.|+.+... ..+++++++.||.++.|.-.. +...+..+..|...|.+++.+-++ .++++.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 477777776544 457999999999999997653 223345667788889999988885 47778666 9999999998
Q ss_pred CCeeeeEeecC--ceEEEEecCCC----EEEEEE-cCCcEEEEECCCCe-EEE-EEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 672 NGSCAGVFKSG--ATQMRFQPRLG----RILAAA-IENYISILDVETQV-CRL-KLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 672 s~~~~~~~~~~--i~~l~fsp~~~----~ll~~s-~dg~I~IwDl~t~~-~i~-~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
+-..+..++.. ...+.|....+ .+++.. .++.|.|+|-...- ... .-.-|..+|.++.+++.+..+++..
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 87665444322 12222322222 344433 46899999987543 222 3334999999999999999999888
Q ss_pred CCeEEEEEcCCC-CC-----------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 742 DELVRVWSIGSG-SK-----------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 742 Dg~I~IwDl~t~-~~-----------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.|.|..|..... .. ...+..+........++.|+|++..+.+.+.|..|++++..+++++
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 899999988731 00 0111122334567789999999999999999999999999988754
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.31 E-value=0.00013 Score=84.62 Aligned_cols=182 Identities=8% Similarity=-0.048 Sum_probs=117.9
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC----CcEEEEECCCCeEEEEEcCC
Q 003271 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQGH 721 (835)
Q Consensus 648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~~i~~l~~h 721 (835)
+.|+|+.+..+.-..+.+.+.|..+.+....+. .....+.++++++++++.+.+ ..+...+..+...+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni- 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI- 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch-
Confidence 344555444444455677888888777666554 335668899999999888742 2344444433222222211
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCC--CcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCC
Q 003271 722 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 798 (835)
Q Consensus 722 ~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~--~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~ 798 (835)
..+ -.+.++|++... .++.|.++|.++.. ....+..+ .-......|.++|||+++++++. +.+|.|+|+.+.
T Consensus 279 -~~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 279 -ARI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred -HHH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 001 133457887665 46789999998710 01233333 35677899999999999988877 669999999875
Q ss_pred cE------------EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 799 KT------------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 799 ~~------------~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+. +....-.......+|.++|..+.|.--|..|..||
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 52 22222234456788999999888888999999996
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=1.7e-06 Score=91.22 Aligned_cols=159 Identities=13% Similarity=0.165 Sum_probs=120.3
Q ss_pred EEEeCCCcEEEEECCCCeeee-EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCC-----eEEEEEcCCCCCeEEEEE
Q 003271 657 CSCDNNSEIRYWSINNGSCAG-VFKSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCW 730 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s~~~~~-~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~I~sl~f 730 (835)
++.+.+-.|.+-|++++..-. ..++.+..+.|.-.++.++.|+..|.|..+|++.. .+...+. |.+.|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence 445557788889998875432 23466888889988999999999999999999864 4555555 8999999977
Q ss_pred cC-CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-
Q 003271 731 NT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA- 805 (835)
Q Consensus 731 sp-dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s--v~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~- 805 (835)
-. ++.+|.+.+ +|+|++||++.-+..+.+..+.+|-+.-.- +.+++....|++++.|-..+||.++.+.++....
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 66 677787777 999999999987544558888888655433 3456777889999999999999999999884332
Q ss_pred ----CCCCeeEEEEe
Q 003271 806 ----HDKLVSSLAAS 816 (835)
Q Consensus 806 ----h~~~V~~la~s 816 (835)
.+..+.+++|.
T Consensus 387 ~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 387 PYSASEVDIPSVAFD 401 (425)
T ss_pred CCccccccccceehh
Confidence 23345566654
No 327
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=2.1e-06 Score=90.53 Aligned_cols=157 Identities=15% Similarity=0.218 Sum_probs=120.3
Q ss_pred EEEEeCC--CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC----Ccee
Q 003271 560 SCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSL 633 (835)
Q Consensus 560 sl~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~----~~~~ 633 (835)
.|+|+-+ |-. ++.+.+-.|-+-|++++..- .|. ..+.|.++.|.-.+.+++.|+..|.|.++|++.. ..+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3456542 323 45556778889999886543 332 5677999999988899999999999999999865 3333
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEeecCceEEE-----EecCCCEEEEEEcCCcEE
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKSGATQMR-----FQPRLGRILAAAIENYIS 705 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~~~i~~l~-----fsp~~~~ll~~s~dg~I~ 705 (835)
..+ -|.+.|+++.........+.+.+.+|+|++||++--++ +..+.+++...+ +.+..+.+++++.|...+
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 443 48899999988774455677888899999999988777 778887766544 566778899999999999
Q ss_pred EEECCCCeEEEEEcC
Q 003271 706 ILDVETQVCRLKLQG 720 (835)
Q Consensus 706 IwDl~t~~~i~~l~~ 720 (835)
||.++.+..+.++.-
T Consensus 372 iWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPF 386 (425)
T ss_pred EEecccCceeeccCC
Confidence 999999988877653
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=2.2e-05 Score=90.96 Aligned_cols=180 Identities=14% Similarity=0.207 Sum_probs=126.0
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 003271 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~ 676 (835)
.+.++|++++ +++|+.|+.+|.|++++....- .....|... .-+|+ ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 4567777775 5689999999999999987432 333344433 44555 7789999999999999877655
Q ss_pred --eEeecCceEEEEecC-----CCEEEEEEcCCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 003271 677 --GVFKSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 747 (835)
Q Consensus 677 --~~~~~~i~~l~fsp~-----~~~ll~~s~dg~I~IwDl~t--~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~I 747 (835)
..|+.++.+++++|+ .+.+++|+.-| +.++.-+= .+....+....++|.+++|. |++|+-++|--|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 456678999999998 47788888888 77765431 11112344567899999996 78999999878999
Q ss_pred EEcCCCCCcceEEEeecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 748 WSIGSGSKGECIHELSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 748 wDl~t~~~~~~i~~l~~~~~------~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
||+.+. ..+..+..... -...+.|.++.+ ++.|...+|+|..++
T Consensus 184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK 233 (846)
T ss_pred Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence 999887 33333332222 234567776654 444555578888776
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=0.00077 Score=76.73 Aligned_cols=90 Identities=10% Similarity=0.079 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCcceEE-EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEE
Q 003271 744 LVRVWSIGSGSKGECIH-ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 822 (835)
Q Consensus 744 ~I~IwDl~t~~~~~~i~-~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~L 822 (835)
.-.+|++...+. .++. +--.....+.+++++|+...++.|+.||.|.+||...+..... .+.-.++.++|+|+|.+|
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEE
Confidence 346677765432 2322 2234577899999999999999999999999999987754433 455678999999999999
Q ss_pred EEEECCCcEEEeC
Q 003271 823 ASASHDKCVKIWK 835 (835)
Q Consensus 823 aSgs~DG~V~IWd 835 (835)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999998
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.8e-05 Score=91.69 Aligned_cols=181 Identities=15% Similarity=0.177 Sum_probs=128.0
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|... ..+|.+++||+.||+|.|..+.+.+. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888886 6699999999999999876432 333345443 56799999999999999999888764 23
Q ss_pred EeecCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEECCC---Ce--eeeEeecCceEEEEecCCCEEEEEEcCCcEE
Q 003271 635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINN---GS--CAGVFKSGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~----g~~ll~sgs~Dg~I~iwDl~s---~~--~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.+ ....++.+|+++|+ ....+++|+..| +.++.-+- .. ......+.+.++.|.. .+++-..|-.|+
T Consensus 108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWANDDGVK 182 (846)
T ss_pred eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEecCCCcE
Confidence 23 24578999999998 123466888777 77765421 11 2233456788888874 377777778899
Q ss_pred EEECCCCeEEEEEcCCCCC------eEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003271 706 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS 752 (835)
Q Consensus 706 IwDl~t~~~i~~l~~h~~~------I~sl~fspdg~~LasgsDg~I~IwDl~t 752 (835)
|||+.+...+..+...... ...++|.++.+ |+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence 9999998888776643332 23578876655 5556666788888873
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.29 E-value=0.00055 Score=80.03 Aligned_cols=224 Identities=14% Similarity=0.113 Sum_probs=132.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-----eE-EEEECCCCCEEEEEE---------CCCeEEEEecCCCCce
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----IT-DVRFSPSLSRLATSS---------ADRTVRVWDTENPDYS 632 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-----V~-sv~fspdg~~Latgs---------~Dg~I~IWDl~t~~~~ 632 (835)
..++.++.++.|+.+|.++++.+..+...... |. ...+. +..++.++ .++.|..+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57778888999999999999999777543321 11 11222 24455553 3688999999988754
Q ss_pred eEEeecCCC-------------------Ce-EEEEEcCCCCcEEEEEeCCC------------------cEEEEECCCCe
Q 003271 633 LRTFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGS 674 (835)
Q Consensus 633 ~~~~~~h~~-------------------~V-~sl~fsp~g~~ll~sgs~Dg------------------~I~iwDl~s~~ 674 (835)
.+....... .| ....+.+.+. +++.++.++ .|.-+|.++++
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 333221110 01 1233444444 444554444 79999999999
Q ss_pred eeeEeecCce---------EEEEe----cCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271 675 CAGVFKSGAT---------QMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738 (835)
Q Consensus 675 ~~~~~~~~i~---------~l~fs----p~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La 738 (835)
.+..+..... ...+. -++. .+++++.+|.++.+|.++++.+...... ...+..+| +..++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv 343 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYL 343 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEE
Confidence 8877652210 01111 1232 5777888999999999999988765421 11122333 22222
Q ss_pred E-----------------E-eCCeEEEEEcCCCCCcceEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271 739 S-----------------V-SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLEL 792 (835)
Q Consensus 739 s-----------------g-sDg~I~IwDl~t~~~~~~i~~l~~~~--------~~V~sv~fspdg~~L~sgs~dg~I~I 792 (835)
. . .+|.|..+|+.++ +.+-...... .........-.+..|++++.+|.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence 1 1 1567888888887 3333332220 11111111224567999999999999
Q ss_pred EEcCCCcEE
Q 003271 793 WNMTENKTL 801 (835)
Q Consensus 793 wDl~~~~~~ 801 (835)
+|.++++.+
T Consensus 421 ld~~tG~~l 429 (488)
T cd00216 421 FDATTGKEL 429 (488)
T ss_pred EECCCCcee
Confidence 999999988
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.28 E-value=0.00053 Score=70.36 Aligned_cols=142 Identities=10% Similarity=-0.021 Sum_probs=97.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl 646 (835)
..+++.|+..+.+.-.|..+|+.+..-. -...|.+-+.- -|++++.|++.|.+++.+..++...........-.+. .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence 4578889999999999999998875532 22333332222 4678999999999999999998753333222222222 2
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCC
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQ 712 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~ 712 (835)
...+++. +++.++.|++.+..|.++..++...+.+ ...-++.+....|+++...|.|.-...++.
T Consensus 100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2345544 8889999999999999999999887744 223446665566777777776665555543
No 333
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=3.6e-06 Score=61.78 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.0
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (835)
+.+..+.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.26 E-value=0.00024 Score=76.06 Aligned_cols=191 Identities=12% Similarity=0.108 Sum_probs=135.8
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCeeeeEeecC-----ceEEEEecCCCEEEEEEcC-----CcEEEEECC
Q 003271 642 TVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKSG-----ATQMRFQPRLGRILAAAIE-----NYISILDVE 710 (835)
Q Consensus 642 ~V~sl~fsp~g~~ll~sgs~Dg-~I~iwDl~s~~~~~~~~~~-----i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~ 710 (835)
....++.+|.....++.+-.-| ...+||..+++....+..+ .-.-+|+++|.+|++.-.| |.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 4557888997777787777666 4678999999988776543 4467899999999987653 789999999
Q ss_pred -CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEEcCCCCCcceEEE--e--ecCC
Q 003271 711 -TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-------------------LVRVWSIGSGSKGECIHE--L--SCTG 766 (835)
Q Consensus 711 -t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg-------------------~I~IwDl~t~~~~~~i~~--l--~~~~ 766 (835)
+...+..+..|.-.-..+.+.|||+.|+++..| .+.+.|..++ +.+.. + ..|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence 668888888888888899999999877766422 2344455555 33333 3 3366
Q ss_pred CceEEEEEeCCCCEEEEEEcCC-------eEEEEEcCCCc-EEE-----eccCCCCeeEEEEeCCCCEEEEE-ECCCcEE
Q 003271 767 NKFHSCVFHPTFPSLLVIGCYE-------TLELWNMTENK-TLT-----LSAHDKLVSSLAASTVNGMVASA-SHDKCVK 832 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~dg-------~I~IwDl~~~~-~~~-----l~~h~~~V~~la~spdg~~LaSg-s~DG~V~ 832 (835)
..|.-+++.++|..++..-..+ -|.+++....- .+. ...-...|-+|+++.++.++++. -.-+.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 7899999999998665554433 34555443321 111 22345789999999999877544 4677899
Q ss_pred EeC
Q 003271 833 IWK 835 (835)
Q Consensus 833 IWd 835 (835)
+||
T Consensus 243 ~~d 245 (305)
T PF07433_consen 243 VWD 245 (305)
T ss_pred EEE
Confidence 995
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.22 E-value=3.9e-06 Score=61.63 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.0
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00018 Score=82.73 Aligned_cols=272 Identities=11% Similarity=0.105 Sum_probs=151.0
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~-l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 632 (835)
|...|.--+++..+++|+.|+.-|.|++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 344455566777889999999999999999877654432 2234455666778888888999999999999987753321
Q ss_pred e-----EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-----eeeEeecCceEEEEecCCCEEEEEEcCC
Q 003271 633 L-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKSGATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 633 ~-----~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-----~~~~~~~~i~~l~fsp~~~~ll~~s~dg 702 (835)
. ..-..|...|++++|++++.. +++|+..|.|.+-.+.... ....+......+.++.-..++++++.-.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 1 112337789999999999874 5599999999998887621 1111122222333343445555544433
Q ss_pred cEEEEECCCCeEEEEEcC-CCC-CeEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCcceEEEe--------------
Q 003271 703 YISILDVETQVCRLKLQG-HKN-QVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHEL-------------- 762 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~-h~~-~I~sl~fspd----g~~LasgsDg~I~IwDl~t~~~~~~i~~l-------------- 762 (835)
. .+++.+.++....-+. -++ .-...||.|. ..-.+.|+--..|+|..+-.. ..+.+.
T Consensus 191 ~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p~i 267 (726)
T KOG3621|consen 191 C-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAPEI 267 (726)
T ss_pred h-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCCcc
Confidence 2 2334433221110000 111 1234455543 233333442235677654321 111111
Q ss_pred --ec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 763 --SC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 763 --~~-------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
.. +.-....+.+-.++ .+++-+.-| |+|+|..+..++........|.+++.+ ++-|+.-..
T Consensus 268 ~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~~ 343 (726)
T KOG3621|consen 268 PIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLNL 343 (726)
T ss_pred cCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEec
Confidence 00 00011112222222 344444444 999999888887666555667666644 444555556
Q ss_pred CCcEEE
Q 003271 828 DKCVKI 833 (835)
Q Consensus 828 DG~V~I 833 (835)
||.+++
T Consensus 344 d~~l~~ 349 (726)
T KOG3621|consen 344 DRGLKV 349 (726)
T ss_pred CCceeE
Confidence 665544
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=4.1e-05 Score=88.53 Aligned_cols=227 Identities=15% Similarity=0.109 Sum_probs=137.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEe
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF 636 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~ 636 (835)
++++||+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..++|+..-|.|.+|..+--. .....+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 6679999998889999899999999999888877788899999999999999999999999999999876211 000000
Q ss_pred ecCC--CCe--EEEE----------------------------E-------------cCCCCcEEEEEeCCCcEEEEECC
Q 003271 637 TGHS--TTV--MSLD----------------------------F-------------HPSKEDLLCSCDNNSEIRYWSIN 671 (835)
Q Consensus 637 ~~h~--~~V--~sl~----------------------------f-------------sp~g~~ll~sgs~Dg~I~iwDl~ 671 (835)
..|. ..+ .|.. | .|+| ..++.++.+|+|+..|-.
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcCC
Confidence 0000 000 0111 1 1233 355567778888877754
Q ss_pred CCeeeeEeecCc-eEEEEecCCCEEEEEEcCCcEEEEECC-CC--------------------------------eEEEE
Q 003271 672 NGSCAGVFKSGA-TQMRFQPRLGRILAAAIENYISILDVE-TQ--------------------------------VCRLK 717 (835)
Q Consensus 672 s~~~~~~~~~~i-~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~--------------------------------~~i~~ 717 (835)
+++....+.+. ..+-|.+....+++...+-.+.+|-+. +| .....
T Consensus 221 -g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg 299 (1416)
T KOG3617|consen 221 -GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG 299 (1416)
T ss_pred -CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh
Confidence 44444444221 122233333333333333222222111 10 00011
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC----CCcceEEE---eecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SKGECIHE---LSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 718 l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~----~~~~~i~~---l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
+. ....+.|+|++..+..|+.|. .|.+.+|--... .+..-... .....+.|..|.|.|-.+.+++-+..
T Consensus 300 ~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~ 376 (1416)
T KOG3617|consen 300 LE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE 376 (1416)
T ss_pred hh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence 11 345789999999998998888 889999953322 11122222 23345779999999876655554443
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0004 Score=81.38 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=132.1
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-eEEEEECCCCCEEEEEECCC-----eEEEEecCCCC-----
Q 003271 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD----- 630 (835)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-V~sv~fspdg~~Latgs~Dg-----~I~IWDl~t~~----- 630 (835)
+|++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+....+..+|++.+.|+ .|+|||++.-+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 45677889999999999988873 45566777777776 44444443446888877765 59999987431
Q ss_pred cee---EEee----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----Ce-e--eeEeecCceEEEEecCCCEEE
Q 003271 631 YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GS-C--AGVFKSGATQMRFQPRLGRIL 696 (835)
Q Consensus 631 ~~~---~~~~----~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s----~~-~--~~~~~~~i~~l~fsp~~~~ll 696 (835)
.++ +.+. ....++.+++++.+ -..+|.|-.+|.|.++.-+- +. . ....+.+++.+++..++..++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 122 2222 13467888998887 44777888899999885321 11 1 112236699999999988856
Q ss_pred EEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271 697 AAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 753 (835)
Q Consensus 697 ~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~ 753 (835)
.+.....|.+|.+....+ ...+..|...+.|..+++...-++++++..|.+||....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 666667889998885443 344677888999999987666577777788999998754
No 339
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.14 E-value=0.00039 Score=84.25 Aligned_cols=227 Identities=14% Similarity=0.192 Sum_probs=134.2
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 003271 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (835)
Q Consensus 596 h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~ 675 (835)
..+.|.++.|..+..-++.+..+|.|.+-|..+.. +.....-...|.+++|+||.. +++..+.+.++.+- ..+...
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~m-T~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFM-TKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEE-eccccc
Confidence 34689999999999999999999999999888755 344444567899999999977 44455545555543 222222
Q ss_pred eeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe-----EEE-----EEcCCCCCeEEEEEcCCCCEEEEEe----
Q 003271 676 AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRL-----KLQGHKNQVHSVCWNTSGEYLASVS---- 741 (835)
Q Consensus 676 ~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~-----~i~-----~l~~h~~~I~sl~fspdg~~Lasgs---- 741 (835)
+...... ..-.+. +.++.++....=.-|.-..++ .+. ....-.+.-++|+|--||.|+++..
T Consensus 143 i~E~~L~---~d~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 143 IAEKPLD---ADDERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred hhccccc---cccccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence 2111100 000011 112222222211111111110 000 0000122235689999999999843
Q ss_pred -C-CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEEcCCCc---EE-EeccCCCCeeE
Q 003271 742 -D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK---TL-TLSAHDKLVSS 812 (835)
Q Consensus 742 -D-g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~---dg~I~IwDl~~~~---~~-~l~~h~~~V~~ 812 (835)
+ ..|+|||.. + ..-..-....+--.+++|-|.|..+++... ++.|.+|.-+.-+ .. ........|..
T Consensus 219 ~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred CCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 4 699999976 3 121222222344568899999998888755 4479999855432 22 33344445999
Q ss_pred EEEeCCCCEEEE---EECCCcEEEe
Q 003271 813 LAASTVNGMVAS---ASHDKCVKIW 834 (835)
Q Consensus 813 la~spdg~~LaS---gs~DG~V~IW 834 (835)
++|+.++.+|+. ......|++|
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEE
Confidence 999999998887 4444459998
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.13 E-value=4.7e-05 Score=88.06 Aligned_cols=259 Identities=10% Similarity=0.082 Sum_probs=147.9
Q ss_pred EEEEEeCCCCEEEEEe----CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 559 ESCHFSPDGKLLATGG----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 559 ~sl~fSpdg~~Lasgs----~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
+-..|+|...+||+++ ..|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+. -.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 3457899888888876 357888883 5665443321 222356799999988899998899999999887553 44
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-------eecCc--eEEEEecCCC------EEEEEE
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-------FKSGA--TQMRFQPRLG------RILAAA 699 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-------~~~~i--~~l~fsp~~~------~ll~~s 699 (835)
....|..+|..+.|+++|. .+++++.-|.|.+|.......+.. +...+ .+.+.++++. ..++.+
T Consensus 96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 5567999999999999987 667999999999998763222211 11222 3344455532 122333
Q ss_pred cCCcEE-EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 700 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 700 ~dg~I~-IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
.+..+- .++.+......... | .-.|+|..++.+. +|+|+-.|-.. .+......... ..+.|.+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS~--vQmLf~~~ 240 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDSE--VQMLFMGY 240 (1416)
T ss_pred chhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccch--HHHHHhcc
Confidence 333222 22222111111111 1 1135666666666 88888777433 22222211110 11223332
Q ss_pred CCEEEEEEcCCeEEEEEc-CCCc---------------------------EE---Ee--ccCCCCeeEEEEeCCCCEEEE
Q 003271 778 FPSLLVIGCYETLELWNM-TENK---------------------------TL---TL--SAHDKLVSSLAASTVNGMVAS 824 (835)
Q Consensus 778 g~~L~sgs~dg~I~IwDl-~~~~---------------------------~~---~l--~~h~~~V~~la~spdg~~LaS 824 (835)
..-|++...+-++.+|-+ .+|. ++ .. ......++|++++..+..|+.
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 222222222222222211 1110 01 00 112456999999999999999
Q ss_pred EECCCcEEEeC
Q 003271 825 ASHDKCVKIWK 835 (835)
Q Consensus 825 gs~DG~V~IWd 835 (835)
|...|.|.+|.
T Consensus 321 gt~~gnv~~w~ 331 (1416)
T KOG3617|consen 321 GTKEGNVTIWL 331 (1416)
T ss_pred cccCCcEEEee
Confidence 99999999994
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00033 Score=79.80 Aligned_cols=186 Identities=12% Similarity=0.205 Sum_probs=120.5
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEc-CC--cE
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAI-EN--YI 704 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~-dg--~I 704 (835)
...+......+..-+|+|++..+.+..-.. ..++++|+++++..... .+.....+|+|+|.+++.+.. |+ .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 444554556677788999988766554332 35999999988765544 455777889999998887665 44 57
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~ 780 (835)
+++|+..+.... +....+.-..-.|+|||++|+..+ .| .|.++|...... ..+......-..-.|+|+|++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 788888776433 443333334678999999999988 44 566777666522 233323333337789999999
Q ss_pred EEEEEcC-C--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEE
Q 003271 781 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA 823 (835)
Q Consensus 781 L~sgs~d-g--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~La 823 (835)
|+..+.. | .|.+.|+.++.......+......-+|.++++.|.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM 385 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence 9888854 3 47777776666343333333344445555555443
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.09 E-value=0.0021 Score=69.73 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=143.2
Q ss_pred EEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEEC--CCe
Q 003271 560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT 620 (835)
Q Consensus 560 sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h~~-------~V~sv~fspdg~~Latgs~--Dg~ 620 (835)
.+.++||++.++++. ..-.|.+||..+......+.-... ....+.++.|++++++... --.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 367899999888743 345799999999988775532221 2234677888888777643 356
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEee----cC----ceEEEEecC
Q 003271 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK----SG----ATQMRFQPR 691 (835)
Q Consensus 621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~~~~~----~~----i~~l~fsp~ 691 (835)
|.|.|+...+. +..+.. . -|.-..|.++.-|.+-+.||.+....+. .|+...... .. ...-++...
T Consensus 120 VtVVDl~~~kv-v~ei~~-P---GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKV-VGEIDT-P---GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEE-EEEEEG-T---SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCce-eeeecC-C---CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88888887664 333331 1 1222334443445566669999998887 455542221 11 223345556
Q ss_pred CCEEEEEEcCCcEEEEECCCCeEEE--EEcCC----------CCCeEEEEEcCCCCEEEEEe----CC-------eEEEE
Q 003271 692 LGRILAAAIENYISILDVETQVCRL--KLQGH----------KNQVHSVCWNTSGEYLASVS----DE-------LVRVW 748 (835)
Q Consensus 692 ~~~ll~~s~dg~I~IwDl~t~~~i~--~l~~h----------~~~I~sl~fspdg~~Lasgs----Dg-------~I~Iw 748 (835)
++.++..+.+|.|+-.|+....... .+.-- .+...-+++++....|++.. ++ .|-+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 6788888999999999988654322 22110 11222366766554444332 21 68888
Q ss_pred EcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEec
Q 003271 749 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS 804 (835)
Q Consensus 749 Dl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l~ 804 (835)
|+.+. +.+..+.. ...+.++.++.+.. .|++.+ .++.|.+||..+++.+...
T Consensus 275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 88887 66666654 34577899988775 565555 4689999999999988443
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.09 E-value=0.0028 Score=74.63 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=113.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeE---E-------EEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~---s-------v~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.++.|+-+|..+++.+..+.... ..+. + +++ .+..++.++.|+.|..+|..+++.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778899999999999887764321 1111 1 122 2346777888999999999998864332
Q ss_pred eec-CC--CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecCc-----------------------
Q 003271 636 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSGA----------------------- 683 (835)
Q Consensus 636 ~~~-h~--~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~i----------------------- 683 (835)
-.. +. ..+.+ -.+. + ..+++..+ .+|.|..+|.++++.+..+....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 221 11 01111 1111 2 33443322 36899999999998876543110
Q ss_pred ------------eEEEEecCCCEEEEEEcC-----C-----------cEEEEECCCCeEEEEEcCCCCCeE---------
Q 003271 684 ------------TQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQVH--------- 726 (835)
Q Consensus 684 ------------~~l~fsp~~~~ll~~s~d-----g-----------~I~IwDl~t~~~i~~l~~h~~~I~--------- 726 (835)
..+.+.+..+.++.+..+ + .|.-.|+++++.+..+......+.
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 123667777777776622 2 678889999999888765222221
Q ss_pred EEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003271 727 SVCWNTSGE---YLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 727 sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~ 754 (835)
-+.+..+|+ .++.+. +|.++++|.++++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 122334665 666666 9999999999884
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.00051 Score=78.54 Aligned_cols=220 Identities=12% Similarity=0.156 Sum_probs=121.4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE-ecCCCCc
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY 631 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW-Dl~t~~~ 631 (835)
...-....+.++|+|+++++++ ||...||.....+.... +.-..++|...+ .+|+-...+.|.|+ +++...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence 4444578899999999998854 78888998655554432 334567898854 57777778889996 443222
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
...+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++.+++..+. ..++|++..
T Consensus 102 -~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~-~~i~il~~~ 173 (443)
T PF04053_consen 102 -VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK-DSIYILKYN 173 (443)
T ss_dssp -T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred -ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC-CeEEEEEec
Confidence 112221 123444432 55 443444 458999999999999999866 699999999888888765 467776554
Q ss_pred CC-----------eEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271 711 TQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779 (835)
Q Consensus 711 t~-----------~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~ 779 (835)
.. .....+......|.+.+|..+ -+|++... .|+. +..+ ....+..-..++.-+.+.+...
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~~ 245 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNG----ETGIIAHLDKPLYLLGYLPKEN 245 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETT----EEEEEEE-SS--EEEEEETTTT
T ss_pred chhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcC----CcceEEEcCCceEEEEEEccCC
Confidence 33 012222222568899999877 44443335 7776 3333 2223333356777788888777
Q ss_pred EEEEEEcCCeEEEEEcC
Q 003271 780 SLLVIGCYETLELWNMT 796 (835)
Q Consensus 780 ~L~sgs~dg~I~IwDl~ 796 (835)
.++....++.|..+.+.
T Consensus 246 ~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 246 RLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-TT--EEEEE--
T ss_pred EEEEEECCCCEEEEEEC
Confidence 88888888888888764
No 345
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00037 Score=79.38 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=124.9
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEEC---C-CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---D-g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
+.....+..-...+..-+|+|++..++..+. . ..+.++|+.++.... .......-..-.|+|+|+.++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCCCCCEEEEEECCC
Confidence 4444455445566777889999887655432 2 358999999876422 111333445578999999999998888
Q ss_pred Cc--EEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271 663 SE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 735 (835)
Q Consensus 663 g~--I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~ 735 (835)
|. |+++|+..+...+.. .+....-.|+|+|.+++..+.. | .|.++|.+...... +......-..-.|+|||+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCC
Confidence 75 666677766533311 1234466799999999888764 3 47777887765533 222233333778999999
Q ss_pred EEEEEe--CCe--EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271 736 YLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 736 ~Lasgs--Dg~--I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg 788 (835)
+|+..+ +|. |.++|+.++.. +..+. .......-.|.++++.++..+..+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 999888 564 77777766632 22222 233334557788888776665544
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0012 Score=74.76 Aligned_cols=218 Identities=13% Similarity=0.106 Sum_probs=153.0
Q ss_pred EEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCcee
Q 003271 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (835)
Q Consensus 558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~~~ 633 (835)
-.++++++++.. +++...++.|.+.|..+.+....+.--. ....++|+++++.++++.. +++|.+.|..+.+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 346788888874 4555556899999988877776664332 5678999999988777765 6888888888877544
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-E----e--ecCceEEEEecCCCEEEEEEcC---Cc
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V----F--KSGATQMRFQPRLGRILAAAIE---NY 703 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~-~----~--~~~i~~l~fsp~~~~ll~~s~d---g~ 703 (835)
. ...-..+ ..+++.|++..++++-..++.|.+.|........ . . ......+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3332234 8899999999888777789999999988776663 1 1 1235678899999987777665 58
Q ss_pred EEEEECCCCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271 704 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg 778 (835)
+.+.|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999998877665222222 566789999999998886 5799999988863222222222223345556655543
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.06 E-value=0.00084 Score=75.79 Aligned_cols=258 Identities=14% Similarity=0.095 Sum_probs=137.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC---CC---
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD--- 630 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t---~~--- 630 (835)
.|+.+.|+++..-|++|...|.|.||.....+... ......-....|.+- ...++.-.|-|+.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 48999999999999999999999999875433221 000011111222110 00111122333321 11
Q ss_pred --ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----------cCceEEEEec-----CC
Q 003271 631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------SGATQMRFQP-----RL 692 (835)
Q Consensus 631 --~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----------~~i~~l~fsp-----~~ 692 (835)
.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-. ..++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 2233444557899999998664 88899999999999999887765421 2255666652 22
Q ss_pred ---CEEEEEEcCCcEEEEECCC---CeE----EEEEcCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 003271 693 ---GRILAAAIENYISILDVET---QVC----RLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 740 (835)
Q Consensus 693 ---~~ll~~s~dg~I~IwDl~t---~~~----i~~l~~h~~~I~sl~-fspd---------------------g~~Lasg 740 (835)
-.+++|+..|.+.+|.+.- +.. ......+.+.|..++ |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 3588889999999997751 211 122224666776665 3221 1267778
Q ss_pred eCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe-----CCCCEEEEEEcCCeEEEEEcCCCcEE-Eecc----CCCCe
Q 003271 741 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-----PTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 810 (835)
Q Consensus 741 sDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs-----pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~----h~~~V 810 (835)
++..++|+...+. +..+...........+++- ..+..|++...+|.|++|.+..-+.+ ...- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 8999999998876 4444444222233344452 35677888999999999999988776 2222 22345
Q ss_pred eEEEEeCCCCEEEEEEC
Q 003271 811 SSLAASTVNGMVASASH 827 (835)
Q Consensus 811 ~~la~spdg~~LaSgs~ 827 (835)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 66777888887665543
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.04 E-value=0.0031 Score=66.51 Aligned_cols=198 Identities=14% Similarity=0.203 Sum_probs=115.6
Q ss_pred EEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
-+.+.+-...|..++|+|+.. ++++....+.|..++. +++.+.++.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 456677777799999999755 6666777888888886 47777776433 35678899988887777665689999999
Q ss_pred cCCCCce--e---EEe-----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---CeeeeE-----------eec
Q 003271 626 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGV-----------FKS 681 (835)
Q Consensus 626 l~t~~~~--~---~~~-----~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s---~~~~~~-----------~~~ 681 (835)
+...... . ..+ ..++..+..++|++.++.++++. ...-..+|.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence 8443211 1 111 13456689999999988777665 344455555543 111111 113
Q ss_pred CceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003271 682 GATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 748 (835)
Q Consensus 682 ~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~---------~~I~sl~fspdg~~LasgsDg~I~Iw 748 (835)
....+.++|..+.+++-+.. ..|.++| .+++.+..+.-.. ...-.|+|.++|++.+++--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 47789999998888877764 6788888 5666655443221 24678999999987776666666655
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.01 E-value=0.002 Score=72.19 Aligned_cols=227 Identities=18% Similarity=0.191 Sum_probs=132.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-cc-------C---------CCCeEEEEECCCCCEEEEEEC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE-------H---------TQWITDVRFSPSLSRLATSSA 617 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~-------h---------~~~V~sv~fspdg~~Latgs~ 617 (835)
...+....|||||+.||... ++.|.+++..++...... .+ - -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999886 689999998877544222 11 0 112356889999999988654
Q ss_pred C-Ce-----------------------------------EEEEecCCCCcee-EEe---ecCCCCeEEEEEcCCCCcEEE
Q 003271 618 D-RT-----------------------------------VRVWDTENPDYSL-RTF---TGHSTTVMSLDFHPSKEDLLC 657 (835)
Q Consensus 618 D-g~-----------------------------------I~IWDl~t~~~~~-~~~---~~h~~~V~sl~fsp~g~~ll~ 657 (835)
| .. +.|+|+.+++... ... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 11 2334444433211 111 123345778888888773443
Q ss_pred EE-eCC---CcEEEEECCCCeeeeEee-------cCceEEEEe-cCCCEEEEEE-cCC--cEEEEECCCCeEEEEEcCCC
Q 003271 658 SC-DNN---SEIRYWSINNGSCAGVFK-------SGATQMRFQ-PRLGRILAAA-IEN--YISILDVETQVCRLKLQGHK 722 (835)
Q Consensus 658 sg-s~D---g~I~iwDl~s~~~~~~~~-------~~i~~l~fs-p~~~~ll~~s-~dg--~I~IwDl~t~~~i~~l~~h~ 722 (835)
.- ..+ ..+.++|..++.+...+. .......+. +++..++..+ .+| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 33 332 256777887765543332 113355555 6666655544 455 5677777777644 555455
Q ss_pred CCeEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271 723 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786 (835)
Q Consensus 723 ~~I~s-l~fspdg~~Lasgs--Dg----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~ 786 (835)
-.|.. +.|++++..|+..+ ++ .|+..++..+ ..+..+.+.......+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56754 67888877666544 22 5666666612 344555554444479999999998876554
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.00056 Score=78.76 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=99.9
Q ss_pred ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (835)
Q Consensus 502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (835)
++..+.+++.|+.-+.+.+|....+..- .....+-.+.+..++++++..++|.|+..|.|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 4556789999999999999944433111 1111124455777788999989999999999999
Q ss_pred EEcCCCe-----EEEEe-ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC---ceeEEeecCCCCeEEEEEcCCC
Q 003271 582 WCTESFT-----VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSK 652 (835)
Q Consensus 582 Wd~~t~~-----~i~~l-~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~sl~fsp~g 652 (835)
+-+.... .+..+ +.|...|+|++|++++..|++|...|.|.+-.++... .....+....+.|.-|++...
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~- 181 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS- 181 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc-
Confidence 9776422 11222 2378899999999999999999999999998887621 112344445677888877633
Q ss_pred CcEEEEEeCCCcEEEEECCC
Q 003271 653 EDLLCSCDNNSEIRYWSINN 672 (835)
Q Consensus 653 ~~ll~sgs~Dg~I~iwDl~s 672 (835)
+++++... ...+++++.
T Consensus 182 -~LLVStl~--r~~Lc~tE~ 198 (726)
T KOG3621|consen 182 -YLLVSTLT--RCILCQTEA 198 (726)
T ss_pred -eehHhhhh--hhheeecch
Confidence 35544432 233455543
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.93 E-value=0.00066 Score=76.64 Aligned_cols=228 Identities=17% Similarity=0.162 Sum_probs=118.4
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--cc------CCCCeEEEEECC-----CC-
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l--~~------h~~~V~sv~fsp-----dg- 609 (835)
.|.+...+....++|++++.|.=| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999888877552 22 344688888862 22
Q ss_pred --CEEEEEECCCeEEEEecCC-CC--ceeEE---eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec
Q 003271 610 --SRLATSSADRTVRVWDTEN-PD--YSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS 681 (835)
Q Consensus 610 --~~Latgs~Dg~I~IWDl~t-~~--~~~~~---~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~ 681 (835)
-+|++|...|.+.+|.+.- .. ..+.. ...+.++|.. |..+|..+++.......
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS 214 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence 4688888999999998752 11 11100 0112222222 22334444432211100
Q ss_pred CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-----CCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271 682 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----TSGEYLASVS-DELVRVWSIGSGSK 755 (835)
Q Consensus 682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs-----pdg~~Lasgs-Dg~I~IwDl~t~~~ 755 (835)
....+.-...-..+++.+.+..++++...+.+..++..........+++- ..+..|++-. +|.|++|.+..-
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-- 292 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-- 292 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence 00000000001235666778899999999887776655332333344552 2455566555 999999999886
Q ss_pred cceEEEeecCC----CceEEEEEeCCCCEEEEEEcCC--eEEEEE
Q 003271 756 GECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYE--TLELWN 794 (835)
Q Consensus 756 ~~~i~~l~~~~----~~V~sv~fspdg~~L~sgs~dg--~I~IwD 794 (835)
+.+..+.... ..+..++++++|..++..+... .+.+|.
T Consensus 293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred -hHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 5555544422 2345667789998666665443 344443
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.91 E-value=0.023 Score=67.05 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=87.8
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEecc--CCC--CeEE-EEECCCCCEEEEEE------CCCeEEEEecCCCCceeEEe
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~--h~~--~V~s-v~fspdg~~Latgs------~Dg~I~IWDl~t~~~~~~~~ 636 (835)
..|+.++.|+.|...|.++++.+..... +.. .+++ ..+. ++ .|+++. .+|.|..+|.++++...+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 4677788899999999999999876542 111 1211 1111 34 455543 26899999999887533322
Q ss_pred ecCC------------------------------CCeE-EEEEcCCCCcEEEEEeC----CC-----------cEEEEEC
Q 003271 637 TGHS------------------------------TTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSI 670 (835)
Q Consensus 637 ~~h~------------------------------~~V~-sl~fsp~g~~ll~sgs~----Dg-----------~I~iwDl 670 (835)
.... ..+. .+.+.+..+.+++..+. ++ .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1111 1111 34566664434333222 12 6778899
Q ss_pred CCCeeeeEeecC----------c--eEEEEecCCC---EEEEEEcCCcEEEEECCCCeEE
Q 003271 671 NNGSCAGVFKSG----------A--TQMRFQPRLG---RILAAAIENYISILDVETQVCR 715 (835)
Q Consensus 671 ~s~~~~~~~~~~----------i--~~l~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i 715 (835)
++|+....+..- . .-+.+..+++ .++.+..+|.++++|-++++.+
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 999988766421 1 1122334555 5667888999999999999876
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.89 E-value=0.0079 Score=64.54 Aligned_cols=223 Identities=14% Similarity=0.149 Sum_probs=127.4
Q ss_pred CCCCEEEEEeCCCeEEEEEcC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE--------
Q 003271 565 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 635 (835)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~-------- 635 (835)
..++.|+.|+.+| |.+++.. ..+..... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899999888 9999983 33333333 233499999999877776664 599999998754322110
Q ss_pred -----eecCCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEECCCC-----eeeeEee--cCceEEEEecCCCEEEEEEcC
Q 003271 636 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFK--SGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 636 -----~~~h~~~V~sl~--fsp~g~~ll~sgs~Dg~I~iwDl~s~-----~~~~~~~--~~i~~l~fsp~~~~ll~~s~d 701 (835)
.......+..++ -...+...++.+. ...|.+|..... +..+.+. ..+..++|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223344444 1223333444333 558888877553 3444444 457778887 55666666 4
Q ss_pred CcEEEEECCCCeEEEEEcCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCce
Q 003271 702 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 769 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~~h------------~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V 769 (835)
+...++|+.++.....+... ..++..+.. +++.+|++ .|..-.+.|.... ... ...+.- ...+
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEEc-CCch
Confidence 55888899876554433211 122333333 44566654 4444444454332 111 112221 2244
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEe
Q 003271 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 803 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l 803 (835)
.++++ ..++|++.+. +.|.||++.+++++..
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 55555 3456777666 5599999999988743
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.86 E-value=0.0017 Score=71.58 Aligned_cols=209 Identities=13% Similarity=0.061 Sum_probs=116.7
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEE---cCC---CCcEEEEEeC----------CCcEEEEECCCC-----eee--
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-----SCA-- 676 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~f---sp~---g~~ll~sgs~----------Dg~I~iwDl~s~-----~~~-- 676 (835)
.|++.|..+....-.........+.+++. ..+ ...+++.|.. .|.|.++++... +..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57777776655322111222334444433 322 1445555532 288999999884 222
Q ss_pred --eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe-EEEEE-cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271 677 --GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 751 (835)
Q Consensus 677 --~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~-~i~~l-~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~ 751 (835)
..+++++.+++.. +++ ++++.++.|.+|++...+ ....- ......+.++... +.+|++|. ...|.++.+.
T Consensus 83 ~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2234567776655 556 455556999999998776 43322 2233466666654 55888888 6667766554
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC-------C--cEE--EeccCCCCeeEE---EEeC
Q 003271 752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---AAST 817 (835)
Q Consensus 752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~-------~--~~~--~l~~h~~~V~~l---a~sp 817 (835)
.....-....-......++++.|-+++..++++..+|.|.++.... + +.. ........|+++ ++.+
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence 4211011222233455688888886667999999999999998763 2 222 233445677777 4444
Q ss_pred C--C------CEEEEEECCCcEEE
Q 003271 818 V--N------GMVASASHDKCVKI 833 (835)
Q Consensus 818 d--g------~~LaSgs~DG~V~I 833 (835)
. + ..++.++.+|.|.+
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cCCCCcccccceEEEEecCCEEEE
Confidence 1 2 24888889998863
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.81 E-value=8e-06 Score=92.27 Aligned_cols=197 Identities=13% Similarity=0.126 Sum_probs=127.7
Q ss_pred CCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCCCeE--EEEeccCCCCeEEEEECC-CCCEEEEEE----CCCeEEEEe
Q 003271 555 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD 625 (835)
Q Consensus 555 ~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~--i~~l~~h~~~V~sv~fsp-dg~~Latgs----~Dg~I~IWD 625 (835)
...+.|+++.-+. ..+++|..+|.|.+-.+....- .....+|....++++|++ |.++||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3457788776644 4688999999999987754221 234567888999999998 556777763 256899999
Q ss_pred cCCCC----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeec-CceEEEEecCCCEEEEEE
Q 003271 626 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKS-GATQMRFQPRLGRILAAA 699 (835)
Q Consensus 626 l~t~~----~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~-~i~~l~fsp~~~~ll~~s 699 (835)
+.+.- .......+......+++|..+ ..++.+|.....|.++|++.. .....+.. -+..+.+.|-....++..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 98651 111112223455678899855 557778988899999999832 22222222 355667777444455666
Q ss_pred cCCcEEEEEC-CCCe-EEEEEcCC----CCCeEEEEEcCCCC-EEEEEe--CCeEEEEEcCC
Q 003271 700 IENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 752 (835)
Q Consensus 700 ~dg~I~IwDl-~t~~-~i~~l~~h----~~~I~sl~fspdg~-~Lasgs--Dg~I~IwDl~t 752 (835)
.||.|.+||. ++-+ ++..+... ...+..++|+|... .+++.. .++|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6999999993 3322 22222211 22488999999643 344444 56999999864
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.81 E-value=0.0051 Score=64.91 Aligned_cols=197 Identities=12% Similarity=0.173 Sum_probs=111.3
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
.+.+-...+..|+|+|+.+.++++....+.|..++.. ++.++.+. +....|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3444556699999999988899999999999999975 77777765 336778887665444433347889999884
Q ss_pred CC------eEEEEEc-----CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC--CCCcceEEE------eecCCCceE
Q 003271 711 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHE------LSCTGNKFH 770 (835)
Q Consensus 711 t~------~~i~~l~-----~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t--~~~~~~i~~------l~~~~~~V~ 770 (835)
.. .....+. .++..+-.++|++.+..|+++. ..-..||.+.. ......+.. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 21 1111121 2455689999999877776666 55566666654 111111111 112334578
Q ss_pred EEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEE---Eecc--C-----CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 771 SCVFHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 771 sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~---~l~~--h-----~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.+.++|....|++-+.. ..|.++| .+|+++ .+.. | -...-.|+|.++|++.++ +.-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 99999987666666554 5888899 556654 2322 1 124678999999975555 455555554
No 357
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.79 E-value=0.04 Score=61.13 Aligned_cols=267 Identities=14% Similarity=0.184 Sum_probs=133.9
Q ss_pred CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLW 582 (835)
Q Consensus 504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (835)
+...+|..+..|+.-.+|+..-. ++ ++..|..+. .......++++.+.|+....+..|+..
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~--------------t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLA--------------TG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcc--------------cC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEE
Confidence 34578888888888887722111 11 222222222 222346677888888777667789999
Q ss_pred EcCCCeEEEEeccCCCCeEEEEEC--CCCCEEEEEEC----------------------CCeEEEEecCCCCceeEEeec
Q 003271 583 CTESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA----------------------DRTVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 583 d~~t~~~i~~l~~h~~~V~sv~fs--pdg~~Latgs~----------------------Dg~I~IWDl~t~~~~~~~~~~ 638 (835)
|+++.+....+......+-...|. .|+..++-.-. ...|...|+.+++ .+.+..
T Consensus 108 dL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~ 185 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFE 185 (386)
T ss_dssp ETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEE
T ss_pred ECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEe
Confidence 999988776666666666556664 45655543311 2335555666655 445544
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeC---CC-cEEEEECCC-CeeeeEe-e----cCceEEEEecCCCEEEEEEc-----CCc
Q 003271 639 HSTTVMSLDFHPSKEDLLCSCDN---NS-EIRYWSINN-GSCAGVF-K----SGATQMRFQPRLGRILAAAI-----ENY 703 (835)
Q Consensus 639 h~~~V~sl~fsp~g~~ll~sgs~---Dg-~I~iwDl~s-~~~~~~~-~----~~i~~l~fsp~~~~ll~~s~-----dg~ 703 (835)
....+..+.|+|....+|+.|-+ +. .-+||-+++ +...+.+ . ..+..--|.++|..|..-+. +..
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 56678889999988888888743 22 124555432 2222221 1 12455569999988776543 335
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC----------------eEEEEEcCCCCCcceEEE-----
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----------------LVRVWSIGSGSKGECIHE----- 761 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg----------------~I~IwDl~t~~~~~~i~~----- 761 (835)
|.-+|+.+++...... ......+-.++||++++.-+ |. .|+++++..+... .+..
T Consensus 266 i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw 342 (386)
T PF14583_consen 266 IAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSW 342 (386)
T ss_dssp EEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-----
T ss_pred EEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcc
Confidence 7778888876543322 12344555678999887644 42 4566777654211 1111
Q ss_pred --eecCCC-ceEEEEEeCCCCEEEEEEc-CCeEEEE
Q 003271 762 --LSCTGN-KFHSCVFHPTFPSLLVIGC-YETLELW 793 (835)
Q Consensus 762 --l~~~~~-~V~sv~fspdg~~L~sgs~-dg~I~Iw 793 (835)
+.++.. .=....|+||+++|+..+. .|...||
T Consensus 343 ~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 343 KVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred eeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 111111 1245789999998877665 4544444
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.011 Score=65.28 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=124.5
Q ss_pred CeEEEEEcCCCeEEEEeccC-CCCeEE---EEECCC----CCEEEEEEC----------CCeEEEEecCCC-----Ccee
Q 003271 577 KKAVLWCTESFTVKSTLEEH-TQWITD---VRFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL 633 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h-~~~V~s---v~fspd----g~~Latgs~----------Dg~I~IWDl~t~-----~~~~ 633 (835)
..|++.|..+.+.+.++.-. ...+++ +.|..+ ..+|++|.. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888888777655322 223444 334432 467777653 289999999984 2222
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeE--eecCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGV--FKSGATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~--~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
.......++|++++-. +..++++. ++.|++|++...+ .... +......+.....++++++|.....|.++...
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 2234457889999877 33455444 5899999998777 4433 33444555555557899999988888877443
Q ss_pred C-CeEEEEE--cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-----C---CcceEEEeecCCCceEEE---EEe
Q 003271 711 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-----S---KGECIHELSCTGNKFHSC---VFH 775 (835)
Q Consensus 711 t-~~~i~~l--~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~-----~---~~~~i~~l~~~~~~V~sv---~fs 775 (835)
. ...+..+ ......+++++|-.+++.++++. +|.|.++..... . ....+..+. .+..|+++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 2 2212222 22456688898886667777777 999999988631 1 111222232 34566666 444
Q ss_pred C--CC------CEEEEEEcCCeEEEE
Q 003271 776 P--TF------PSLLVIGCYETLELW 793 (835)
Q Consensus 776 p--dg------~~L~sgs~dg~I~Iw 793 (835)
| .+ ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 22 248888899987743
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.78 E-value=8.4e-06 Score=92.10 Aligned_cols=196 Identities=18% Similarity=0.267 Sum_probs=134.2
Q ss_pred CCeEEEEECCCC--CEEEEEECCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEEEC
Q 003271 598 QWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI 670 (835)
Q Consensus 598 ~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs----~Dg~I~iwDl 670 (835)
..+.|+++..+. .++++|..+|.|.+-.+...... .....++....++++|++-...++++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456677665543 47888999999999988765443 4556678889999999987666776663 4668999999
Q ss_pred CCCee--e--eEe----ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CCCEEEEEe
Q 003271 671 NNGSC--A--GVF----KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS 741 (835)
Q Consensus 671 ~s~~~--~--~~~----~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs 741 (835)
.++-. . ..+ ..+..+++|..+.+.+++|.....+.++|++......... .+..+..+..+| .+.|+++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hhhhcccceecCCCCCceeccc
Confidence 87621 1 112 2346688888888888889888999999998432221111 344567788888 788998888
Q ss_pred CCeEEEEE-cCCCCCcceEEEeecC----CCceEEEEEeCCCCE-EEEEEcC-CeEEEEEcC
Q 003271 742 DELVRVWS-IGSGSKGECIHELSCT----GNKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 796 (835)
Q Consensus 742 Dg~I~IwD-l~t~~~~~~i~~l~~~----~~~V~sv~fspdg~~-L~sgs~d-g~I~IwDl~ 796 (835)
||.|.+|| .+.-+ ..+..+... ...+..++|+|...- +++...| ++|++||+.
T Consensus 216 dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999999 43322 122222212 234889999997643 4444444 489999974
No 360
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.77 E-value=0.0028 Score=72.23 Aligned_cols=112 Identities=10% Similarity=0.158 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCcEEEEE----eCCCc----EEEEECCCCeee--e--E--eecCceEEEEecCCCEEEEEEcCCcEE
Q 003271 640 STTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSCA--G--V--FKSGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 640 ~~~V~sl~fsp~g~~ll~sg----s~Dg~----I~iwDl~s~~~~--~--~--~~~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.....++.|+-...+.+.+. +.+|. ..+|++...+.. . . +++.+.+.+++|+...++.|+.||.|.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456777776555555443 23343 345666544322 1 1 235689999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271 706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~ 753 (835)
+||...+..... ...-..+.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 285 LyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999987744433 2455678899999999999999 799999998754
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.031 Score=63.88 Aligned_cols=190 Identities=12% Similarity=0.072 Sum_probs=101.7
Q ss_pred eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-c----eeEEeecCCCCeEEEEEcCCC
Q 003271 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y----SLRTFTGHSTTVMSLDFHPSK 652 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~----~~~~~~~h~~~V~sl~fsp~g 652 (835)
.|.||+.. |+.+.++.-..+.|.++.|+.+. .|++...||.+++||+.... . .+....-....|....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 58999864 55665554444899999998864 55566799999999986322 0 011111111122222333233
Q ss_pred CcEEEEEeCCCcEEEEECCCCe-eeeEe---ecCce----------EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271 653 EDLLCSCDNNSEIRYWSINNGS-CAGVF---KSGAT----------QMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718 (835)
Q Consensus 653 ~~ll~sgs~Dg~I~iwDl~s~~-~~~~~---~~~i~----------~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l 718 (835)
+++. ..++.|++.+-.... ..+.+ ..... ...++.+....+....++.+.+.+...... +
T Consensus 140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 2222 224444444322211 11111 10000 022344444445555555555444332211 1
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCC
Q 003271 719 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP 779 (835)
Q Consensus 719 ~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~ 779 (835)
. ..+++..++.||+|++||.-. +|.+.|.+..-. +.+.++... ......+.|.-+..
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 1 246899999999999999988 789888876544 444444443 34566777776643
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.74 E-value=0.011 Score=63.54 Aligned_cols=214 Identities=14% Similarity=0.131 Sum_probs=122.1
Q ss_pred CCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee---------
Q 003271 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------- 677 (835)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--------- 677 (835)
..++.|+.|+.+| |.+|++.......... +...|..+...++-+.+++-+ |+.++++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577899999998 9999994333322322 233499999998866555554 5999999987644333
Q ss_pred ------Eee--cCceEEE--EecCCCEEEEEEcCCcEEEEECCCC-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEeC
Q 003271 678 ------VFK--SGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD 742 (835)
Q Consensus 678 ------~~~--~~i~~l~--fsp~~~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~I~sl~fspdg~~LasgsD 742 (835)
.+. .++...+ -...+...++......|.+|..... .....+. -...+.+++|. +..|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 111 1222222 2234555666666778888877653 3445554 45788899998 667887877
Q ss_pred CeEEEEEcCCCCCcceEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCee
Q 003271 743 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS 811 (835)
Q Consensus 743 g~I~IwDl~t~~~~~~i~~l~~~----------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~ 811 (835)
+...+.|+.++.. ..+...... ..++..+. .+++.+|++. +..-.+.|....... ....-...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchh
Confidence 7799999997633 222211111 12232333 3345555542 333333344332211 1111123556
Q ss_pred EEEEeCCCCEEEEEECCCcEEEeC
Q 003271 812 SLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 812 ~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+++. ..+|+..+.+ .|.||+
T Consensus 233 ~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEE--CCEEEEECCC-EEEEEE
Confidence 66664 4577766654 488774
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.02 Score=62.50 Aligned_cols=217 Identities=11% Similarity=0.064 Sum_probs=130.5
Q ss_pred EEECCCCCE-EEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-
Q 003271 603 VRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK- 680 (835)
Q Consensus 603 v~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~- 680 (835)
..|.++... +++--..+.|.-|+..++.. ..+. +...+.++.....+. .|+++ +.-+++++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEecc
Confidence 346666553 44444567888888886653 3333 223344444444433 44455 3456777776655533221
Q ss_pred -------cCceEEEEecCCCEEEEEEc-----------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 681 -------SGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 681 -------~~i~~l~fsp~~~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
.....+.+.|+|...+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 22557788888776665433 133555554 4556666665556667899999998888777
Q ss_pred -CCeEEEEEcCC--CCCc--ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-EeccCCCCeeEEE
Q 003271 742 -DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLA 814 (835)
Q Consensus 742 -Dg~I~IwDl~t--~~~~--~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h~~~V~~la 814 (835)
.+.|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 57888888762 2111 11222333456677788888888665555554 99999998 6666 4444447788888
Q ss_pred EeC-CCC-EEEEEEC
Q 003271 815 AST-VNG-MVASASH 827 (835)
Q Consensus 815 ~sp-dg~-~LaSgs~ 827 (835)
|-- +.+ +++|+..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 864 334 4444433
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.60 E-value=0.033 Score=63.62 Aligned_cols=219 Identities=12% Similarity=0.083 Sum_probs=124.9
Q ss_pred CeEEEEECCCCCEEEEE-ECCC----eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC----------C
Q 003271 599 WITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 663 (835)
Q Consensus 599 ~V~sv~fspdg~~Latg-s~Dg----~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D----------g 663 (835)
.+..++++|++++||.+ +..| .|+|+|+.+++.....+... ....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999988866 3333 69999999986533333321 123499999988888776433 2
Q ss_pred cEEEEECCCCeee--eEee--cC---ceEEEEecCCCEEEEEEcC----CcEEEEECCCC-----eEEEEEcCCCCCeEE
Q 003271 664 EIRYWSINNGSCA--GVFK--SG---ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS 727 (835)
Q Consensus 664 ~I~iwDl~s~~~~--~~~~--~~---i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~-----~~i~~l~~h~~~I~s 727 (835)
.|++|.+.+.... ..+. .. ...+..++++.++++.... ..+++.|+..+ ...............
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888765432 3332 22 3467889999998876653 35888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEe----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcC-CCc
Q 003271 728 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENK 799 (835)
Q Consensus 728 l~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~-~~~ 799 (835)
+... .+.+++... .+.|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4433 444444443 45788888887643223335555555444344444555666655543 89999999 554
Q ss_pred EEEecc-CCCCeeEEEEeCCCC
Q 003271 800 TLTLSA-HDKLVSSLAASTVNG 820 (835)
Q Consensus 800 ~~~l~~-h~~~V~~la~spdg~ 820 (835)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 234455555455544
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.025 Score=61.76 Aligned_cols=219 Identities=12% Similarity=0.120 Sum_probs=133.7
Q ss_pred EEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee-
Q 003271 560 SCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (835)
Q Consensus 560 sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~- 637 (835)
+-.|.++.. ++.+--..+.|.-|+..+++... +. +.+.+.++.....+..|+++. . -+.+++.+++.. +..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~-~t~~~~ 103 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGK-ITLLAE 103 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCce-eEEecc
Confidence 345666666 44555567889999988664432 22 333445555554555566553 3 367777765443 11111
Q ss_pred ---c-CCCCeEEEEEcCCCCcEEEEEe-----C-----CCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEc
Q 003271 638 ---G-HSTTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 638 ---~-h~~~V~sl~fsp~g~~ll~sgs-----~-----Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~ 700 (835)
+ .....+.+.+.|+|...+-+-+ . -|.|+.+|. .+..++.+.. -.+.++|+|+++.++++..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 1245667888899874443333 1 134555554 3555544444 2567999999998888877
Q ss_pred C-CcEEEEECCC------Ce-EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 701 E-NYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 701 d-g~I~IwDl~t------~~-~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
. +.|+-|++.. +. ....+..+.+..-.++...+|.+.+++. +| .|.+|+.. + +.+..+......++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCc
Confidence 5 7888887752 11 1222333456677788888999886544 44 99999987 5 67777777667788
Q ss_pred EEEEe-CCCCEEEEEEcCC
Q 003271 771 SCVFH-PTFPSLLVIGCYE 788 (835)
Q Consensus 771 sv~fs-pdg~~L~sgs~dg 788 (835)
+++|- ++.+.|++.+...
T Consensus 259 ~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 259 NPAFGGPDLNTLYITSARS 277 (307)
T ss_pred cceEeCCCcCEEEEEecCC
Confidence 88884 4556666665543
No 366
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.53 E-value=0.16 Score=61.33 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=154.6
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEE--cCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd--~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~ 631 (835)
..|.-..|-.|..+|.++..||.+.-|- ..++..-..- .-...++.--.|+..++.-+.+..|.-..+|.-+. +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 3466666766788999999999987664 4454433221 22345666667776655555555666666665542 32
Q ss_pred eeEEeecCCCCeEEEE-Ec-CCCCcEEEEEeCCCcEEEEECCCCeee--eEee--cCceEEEEecCCCEEEEEEc-----
Q 003271 632 SLRTFTGHSTTVMSLD-FH-PSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--SGATQMRFQPRLGRILAAAI----- 700 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~-fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~~--~~i~~l~fsp~~~~ll~~s~----- 700 (835)
+...+.- ..+..++ |+ +.....++++. .+.+++.-+..-..+ +++. .....+++.+..-.+.+.+.
T Consensus 663 v~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 2222111 1111111 22 22233444444 566777766543222 2232 34566777764444444332
Q ss_pred ------C---CcEEEEECCCCeEEEEEcC-CCC---CeEEEEEcCC-CCEEEEEe-----------CCeEEEEEcCCCCC
Q 003271 701 ------E---NYISILDVETQVCRLKLQG-HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSK 755 (835)
Q Consensus 701 ------d---g~I~IwDl~t~~~i~~l~~-h~~---~I~sl~fspd-g~~Lasgs-----------Dg~I~IwDl~t~~~ 755 (835)
+ ..++++|-.+.+.+...+- ... .|.++.|..| +.++++|+ .|.|.||.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 1367777777666554331 112 3445558777 77777764 25788888877544
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 756 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 756 ~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.+.+++....+ .+.++..- +|+ +.++-...|++|++.+.+.+ .-..|...+..+...-.+..|+.|..=++|.+
T Consensus 820 L~~v~e~~v~G-av~aL~~f-ngk--llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKG-AVYALVEF-NGK--LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeecc-ceeehhhh-CCe--EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 45555544433 33333321 344 44455668999999988666 44577788888988888888998886666544
No 367
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.49 E-value=0.036 Score=61.90 Aligned_cols=219 Identities=11% Similarity=0.126 Sum_probs=108.4
Q ss_pred CCCEEEEEe-CCCeEEEEEcCC----CeEEEEecc---CC----CCeEEEEECCCCCEEEEEEC------CCeEEEEecC
Q 003271 566 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 627 (835)
Q Consensus 566 dg~~Lasgs-~Dg~I~VWd~~t----~~~i~~l~~---h~----~~V~sv~fspdg~~Latgs~------Dg~I~IWDl~ 627 (835)
+.++|+..+ .++.|+|+|+.+ -++.++++. +. ..-..+..-|+|.+++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 778999999873 455566643 11 12233445578888888632 2467788877
Q ss_pred CCCceeEEeecC---CCCeEEEEEcCCCCcEEEEEeC--------------------CCcEEEEECCCCeeeeEeecC--
Q 003271 628 NPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKSG-- 682 (835)
Q Consensus 628 t~~~~~~~~~~h---~~~V~sl~fsp~g~~ll~sgs~--------------------Dg~I~iwDl~s~~~~~~~~~~-- 682 (835)
+.+. ....... ...-+.+-|.|..+ +++|... ..++.+||+.+.+.+.++..+
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6443 3333221 23345677778644 5555532 348999999999999988754
Q ss_pred ---ceEEEEe--cCCCEEEEEE-cCCcEEEEEC-CCCe----EEEEEcCC-----------------CCCeEEEEEcCCC
Q 003271 683 ---ATQMRFQ--PRLGRILAAA-IENYISILDV-ETQV----CRLKLQGH-----------------KNQVHSVCWNTSG 734 (835)
Q Consensus 683 ---i~~l~fs--p~~~~ll~~s-~dg~I~IwDl-~t~~----~i~~l~~h-----------------~~~I~sl~fspdg 734 (835)
...++|. |+..+-++++ ....|..|-- +.++ .+..+... ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 3345554 4455544444 3444544433 3332 22222210 2457899999999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCcceEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003271 735 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC 786 (835)
Q Consensus 735 ~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~----------------~~V~sv~fspdg~~L~sgs~ 786 (835)
++|+.+. +|.|+.||+......+.+..+...+ +....+..|.||+.|+++.+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 9999999999876666665543211 23467888999999888764
No 368
>PRK10115 protease 2; Provisional
Probab=97.47 E-value=0.2 Score=61.15 Aligned_cols=236 Identities=10% Similarity=0.015 Sum_probs=121.6
Q ss_pred EEEEEEeCCCCEEEEEeC-----CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC------CeEEEEec
Q 003271 558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 626 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~-----Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D------g~I~IWDl 626 (835)
+..+.|+|||++|+.+.. ...|++.|+.+++.+...-.... ..++|.+|++.|+.+..+ ..|+++++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 667889999998887643 23588889988864322211211 469999998876665442 36888888
Q ss_pred CCCCc-eeEEeecCCCCeE-EEEEcCCCCcEEEEEe--CCCcEEEEECC--CCeeeeEee--cCceEEEEecCCCEEEEE
Q 003271 627 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFK--SGATQMRFQPRLGRILAA 698 (835)
Q Consensus 627 ~t~~~-~~~~~~~h~~~V~-sl~fsp~g~~ll~sgs--~Dg~I~iwDl~--s~~~~~~~~--~~i~~l~fsp~~~~ll~~ 698 (835)
.++.. ....+........ .+..+.+++.+++.+. .++.+.+|+.. .+.....+. ..+.. .+...++.+++.
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-SLDHYQHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-EEEeCCCEEEEE
Confidence 87721 2233433333333 3333447676665443 34678999853 333222222 22221 222223555554
Q ss_pred EcC----CcEEEEECCCCeEEEEEcCC-C-CCeEEEEEcCCCCEEEEEe-CCe--EEEEEcCCCCCcceEEEee-cCCCc
Q 003271 699 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK 768 (835)
Q Consensus 699 s~d----g~I~IwDl~t~~~i~~l~~h-~-~~I~sl~fspdg~~Lasgs-Dg~--I~IwDl~t~~~~~~i~~l~-~~~~~ 768 (835)
+.. ..|...++........+..+ . ..|..+.+.. +.++++.. ++. |.+++..++ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 442 23444455421111223334 2 3677888873 33344444 664 445554322 223332 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEEcCCCcEE
Q 003271 769 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 801 (835)
Q Consensus 769 V~sv~fs--pdg~-~L~sgs~d---g~I~IwDl~~~~~~ 801 (835)
+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 3444 34444332 48999998877644
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.46 E-value=0.013 Score=69.66 Aligned_cols=210 Identities=13% Similarity=0.135 Sum_probs=115.7
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE------CCC--eEEEEecCCCCceeEEeecCCCCeEEEE
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs------~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~ 647 (835)
+|.+.-.+-.....+.-..+....+.+.+++|+|..++... .|. .|.+++.. ........+ .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence 56555544322222222223334678999999999887665 244 45555543 222222332 2378889
Q ss_pred EcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEE---EECCCCe
Q 003271 648 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISI---LDVETQV 713 (835)
Q Consensus 648 fsp~g~~ll~sgs-----------~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~I---wDl~t~~ 713 (835)
|+|+|+.+.+... ..+.+.+.++..++....+...+..+.|+|+|..++... ++.|++ .....+.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999775554432 224555556665554445566799999999999988876 577777 4444454
Q ss_pred EEE----EEc-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271 714 CRL----KLQ-GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 714 ~i~----~l~-~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg 788 (835)
... .+. +-...+.++.|..++.+++...++...+|.+.-.........-......+..++-+++ .|+++..++
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 111 122 2233468899999999765544443334443322111111011112445666666653 466666666
Q ss_pred eEEE
Q 003271 789 TLEL 792 (835)
Q Consensus 789 ~I~I 792 (835)
.+.+
T Consensus 561 ~~~l 564 (591)
T PRK13616 561 VLQL 564 (591)
T ss_pred eEEe
Confidence 4443
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.45 E-value=0.018 Score=69.59 Aligned_cols=140 Identities=9% Similarity=0.081 Sum_probs=95.6
Q ss_pred CCEEEEE-ECCCeEEEEecCCCCceeEEeecCCCC-eEEEEEcC-----CCCcEEEEEeCCCcEEEEECCCCe--eee--
Q 003271 609 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG-- 677 (835)
Q Consensus 609 g~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~h~~~-V~sl~fsp-----~g~~ll~sgs~Dg~I~iwDl~s~~--~~~-- 677 (835)
.++|+.. .....|+-.|++.++. +..+..|... |..++-.. +.... +.|-.+..|..||.+-.. ++.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~t-flGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQT-FLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCce-EEEECCCceEEeccCCCCCceeecc
Confidence 3444443 3457889999999885 6666666543 55554321 12223 356678899999998632 321
Q ss_pred --Eee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271 678 --VFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 751 (835)
Q Consensus 678 --~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~ 751 (835)
.+. ....|++-+. .++|++|+.+|.|++||--..+....+.+-..+|.+|+.+.||++|++.++..|.+++..
T Consensus 571 ~k~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ccccccCCCceEEEecC-CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 111 2245555444 588999999999999995444444456677899999999999999999999999998863
No 371
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.42 E-value=0.04 Score=62.90 Aligned_cols=188 Identities=9% Similarity=0.068 Sum_probs=97.3
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEE----Eec
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMR----FQP 690 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~----fsp 690 (835)
.|+||+..... +..+.-..+.|.++.|..+. .++ .-..||.+++||+.... ...+. ..+.... +..
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 36677665432 22222222789999998864 344 44569999999997333 11111 1111110 112
Q ss_pred CCCEEEEEEcCCcEEEEECCCCe-EEEEEc---CCCC------CeE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce
Q 003271 691 RLGRILAAAIENYISILDVETQV-CRLKLQ---GHKN------QVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 758 (835)
Q Consensus 691 ~~~~ll~~s~dg~I~IwDl~t~~-~i~~l~---~h~~------~I~-sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~ 758 (835)
..+ +++.+.++.+++..--... ....+. .... .+. ...++.+....+... ++.+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 123 4444455555554332221 111111 0000 000 022334444444433 445554443221
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec--cCCCCeeEEEEeCCCC
Q 003271 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNG 820 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~--~h~~~V~~la~spdg~ 820 (835)
..+. ..+++..+++||++++|+.-..+|.+.|.+.+-.+.+... .-......|.|.-++.
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 2468999999999999999999999999987666555222 2235667777776544
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00072 Score=77.03 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=79.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeE-EEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~-sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
.-.|.-+.|+|.-.++|++..+|.|.++.+. ...+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3458889999999999999999999999988 788888887888887 99999999999999999999999999887533
Q ss_pred EEeecCCCCeEEEEEcC
Q 003271 634 RTFTGHSTTVMSLDFHP 650 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp 650 (835)
.....-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 33333445677777763
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.025 Score=59.22 Aligned_cols=228 Identities=12% Similarity=0.102 Sum_probs=136.1
Q ss_pred EEEEeCCCC-EEEEEeCCCe-EEEEEcCCCeEEEEeccCCC--CeEEEEECCCCCEEEEEECC-----CeEEEEecCCCC
Q 003271 560 SCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (835)
Q Consensus 560 sl~fSpdg~-~Lasgs~Dg~-I~VWd~~t~~~i~~l~~h~~--~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~ 630 (835)
.|+|+|.-. -++.+-.-|+ ..++|........++...++ .--.=.|++||.+|+..-.| |.|-|||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 477777543 3555555444 57888887766555432221 11123599999999887544 789999999765
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEe------CCC-----------cEEEEECCCCeeeeEee-------cCceEE
Q 003271 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------NNS-----------EIRYWSINNGSCAGVFK-------SGATQM 686 (835)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs------~Dg-----------~I~iwDl~s~~~~~~~~-------~~i~~l 686 (835)
..+-.+..|.-....+.|.+||+.+++..+ .-| .+.+.|..++..+.... ..+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 556778888888889999999987766543 111 33444544555443332 236677
Q ss_pred EEecCCCEEEEEEcCCc-----EEEEECCCCeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003271 687 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS 752 (835)
Q Consensus 687 ~fsp~~~~ll~~s~dg~-----I~IwDl~t~~~i~~l~-------~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t 752 (835)
+..+++..++.+-..|. ..+=-...++.+.-+. .....|-+|+.+.+..+++..+ .+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 77777665554443331 1111112223322222 1234677888887777777777 55889999999
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 753 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 753 ~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
+ ..+.... -.-++-.-+...-+++.+.+|.|.++.
T Consensus 312 G---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 G---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred C---cEEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 8 3333211 111222333444478888888888874
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.19 E-value=0.045 Score=65.19 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----CC--CcEEEEECCCCeeeeEee-cCceEEEEecCCCEEEEEEcC-----------
Q 003271 641 TTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFK-SGATQMRFQPRLGRILAAAIE----------- 701 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs-----~D--g~I~iwDl~s~~~~~~~~-~~i~~l~fsp~~~~ll~~s~d----------- 701 (835)
..+.+.+++|+|+.++++.. .| ..|++++..... ..... .....-.|+|+++.+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 46788999999998877762 23 356666653222 22222 236778899998877776532
Q ss_pred -CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcc-eE---EEeec-CCCceEEEEEe
Q 003271 702 -NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE-CI---HELSC-TGNKFHSCVFH 775 (835)
Q Consensus 702 -g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~-~i---~~l~~-~~~~V~sv~fs 775 (835)
+.+++.+++.++... .....|..+.|+|||..|+...++.|+|--+....... .+ ..+.. ....+.++.|.
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 234444444433322 23567999999999999998888888773332211111 11 12222 23346889999
Q ss_pred CCCCEEEEEEcCC--eEEEEEcCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 776 PTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 776 pdg~~L~sgs~dg--~I~IwDl~~~~~~~l~~--h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
.++.. +++..++ .|+..++.......+.. ....+..|+-++. .|+....+|.+.
T Consensus 506 ~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 506 TGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 99984 4555554 34444555433222222 3566777777653 355555666443
No 375
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.19 E-value=0.14 Score=58.79 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=80.8
Q ss_pred CCEEEEEEeCC----CCEEEEEeCCCeEEEEEcC-----CCeEEEEec-cC--CCC--eEEEEECCCCCEEEEEECCCeE
Q 003271 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EH--TQW--ITDVRFSPSLSRLATSSADRTV 621 (835)
Q Consensus 556 ~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~-----t~~~i~~l~-~h--~~~--V~sv~fspdg~~Latgs~Dg~I 621 (835)
..|..++|.|- ...|++....+.|.||-+. ..+.+..-. .. .-+ -..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 34899999984 3345556678899999764 223221111 11 112 2357799998888877766666
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~ 673 (835)
.++++......++.-....+.|.|.+|..||..++++.+..=.-++||-...
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 6777765554454444566889999999999999888887778889997544
No 376
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.10 E-value=0.11 Score=53.09 Aligned_cols=207 Identities=12% Similarity=0.103 Sum_probs=111.8
Q ss_pred CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC-C-CcEEEEEeCCCcEEEEECCC--CeeeeEee----
Q 003271 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-K-EDLLCSCDNNSEIRYWSINN--GSCAGVFK---- 680 (835)
Q Consensus 609 g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~-g-~~ll~sgs~Dg~I~iwDl~s--~~~~~~~~---- 680 (835)
+.++.+--..+.|+-||+.....-...+.+. ++.++.+--. + ..+.+.++..-.|.-||... .+..+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 3445554456777779988765422333322 2333333221 1 23455555555566687432 22333311
Q ss_pred ----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC--------CCeEEEEEcCCCCEEEEEe--CCeEE
Q 003271 681 ----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--------NQVHSVCWNTSGEYLASVS--DELVR 746 (835)
Q Consensus 681 ----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--------~~I~sl~fspdg~~Lasgs--Dg~I~ 746 (835)
.....-..+|+|++ +.|.....-.++....+....-+.+|. .--..++|+.+.+.+.... +-+|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 22455567888887 455432111122222222222222222 2334678988877766655 66887
Q ss_pred EEE--cCCCCC--cceEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeC
Q 003271 747 VWS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 817 (835)
Q Consensus 747 IwD--l~t~~~--~~~i~~l~~----~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~sp 817 (835)
-|| ..++.. .+.+..++. ..-..-.+++..+|...+++-..++|..+|..+|+.+ .+.-....|+++||--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 788 444421 233333332 1112233455667777777777779999999999988 5555678899999974
Q ss_pred C
Q 003271 818 V 818 (835)
Q Consensus 818 d 818 (835)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 3
No 377
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.09 E-value=0.39 Score=50.80 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=122.7
Q ss_pred eEEEEecc-CCCCeEEEEECCCCCEEEEEECCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 588 ~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
+.+.++.. .......+.|..++.++-+.+.-| .|+.+|+.+++..........-.-..++... +.++.-.-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 44555542 223456788877787777777665 7999999998754333333333444555553 356667778999
Q ss_pred EEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC-----CCCeEEEEEcCCCCEE
Q 003271 665 IRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL 737 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-----~~~I~sl~fspdg~~L 737 (835)
..+||..+.+.+..+.-. -..++ .++..|+.......|+++|..+.+....+.-. -..+..+.|. +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 999999999988887643 33444 66788888888899999999887766655421 2345566765 56555
Q ss_pred EEEe-CCeEEEEEcCCCCCcceEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003271 738 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~---------------~~~~V~sv~fspdg~~L~sgs~d 787 (835)
|-.- ...|...|..++ .++..+.. .....+.|+++|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 5554 778888999888 44444321 13568999999998888877754
No 378
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.57 Score=49.70 Aligned_cols=267 Identities=10% Similarity=0.054 Sum_probs=145.0
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE---EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i---~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 632 (835)
+-+..+.++ ++++..+..+.-++|+|+.+...- ..+. -.+.-.++.. .|++..++..|.-+.++|+.++..+
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 335566666 457777888888999999765433 2222 1133444444 5789998887777889999887653
Q ss_pred e--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEeec--CceEEEEecCCCEEEEEEcCCcEE
Q 003271 633 L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKS--GATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 633 ~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
. ..+......-..++++ |+ ..+.+..|+-+.+.|+..... +..... .+..+..++ ++.+....+..+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vvy~egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVVYDEGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEEcccceE
Confidence 3 2333334444667776 33 444566788999999976533 333332 344444444 4555556666788
Q ss_pred EEECCCCeEEEEEcC-CCCCeEEE-EEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271 706 ILDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 706 IwDl~t~~~i~~l~~-h~~~I~sl-~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~ 782 (835)
+.|..+.+....+.. ....+.++ .+.-.+++..... +.-+-+.|+.+.........+...+.....+... +.++.
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~y 314 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNY 314 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeE
Confidence 888876653333221 12223233 2233455555555 5566777776653323333333222233333322 23333
Q ss_pred EEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 783 VIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 783 sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+..+ ...+.+....+-. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus 315 iadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 315 IADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred eccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 33333 3334444333222 1112222233344444456788888999999885
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.016 Score=65.22 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=94.1
Q ss_pred CCEEEE-EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEEcCCCCCcceEEEe
Q 003271 692 LGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHEL 762 (835)
Q Consensus 692 ~~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~--------~LasgsDg~I~IwDl~t~~~~~~i~~l 762 (835)
.+.|+. +.....++-.|++.|+.+....-+.. |.-+.+.|+.+ .|+.-++..|.-||.+-.... .+...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~ 422 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV 422 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee
Confidence 344443 44457899999999999998886655 77777777653 466666889999999854321 22222
Q ss_pred ec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271 763 SC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 763 ~~----~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~D 828 (835)
.. ......|++-..+| +|++|+.+|.|++||-...... .+.+...+|..|..+.+|++|++.|..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 22 23445566655555 6999999999999997332222 677888999999999999988876643
No 380
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.04 E-value=0.91 Score=51.67 Aligned_cols=258 Identities=14% Similarity=0.150 Sum_probs=144.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCe-----EEEEeccCCCCeEEEEECC-----CCCEEEEEECCCeEEEEecCCCC------
Q 003271 567 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD------ 630 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~-----~i~~l~~h~~~V~sv~fsp-----dg~~Latgs~Dg~I~IWDl~t~~------ 630 (835)
...|++|+.+|.++||+..... .+... .-..+|..|..-. +...||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 3579999999999999875432 22121 2456788777542 2234444 566788888873211
Q ss_pred --ceeEEeecCCC--CeEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEc
Q 003271 631 --YSLRTFTGHST--TVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 631 --~~~~~~~~h~~--~V~sl~fsp----~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~ 700 (835)
..+.....|.- ....+++-| .++.+++.-+-||.+.+|+-+.....+.+..- ...++|.+..+.|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 22333333432 233333332 33678999999999999998866544444432 456888898899999999
Q ss_pred CCcEEEEECCCC--------------------e---EEEEEcCCCCCeEEE---EEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003271 701 ENYISILDVETQ--------------------V---CRLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSGS 754 (835)
Q Consensus 701 dg~I~IwDl~t~--------------------~---~i~~l~~h~~~I~sl---~fspdg~~LasgsDg~I~IwDl~t~~ 754 (835)
+..|..|....- + +-.++. -...+..+ .++.....|++-+...+.+.+-. +
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G- 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G- 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-
Confidence 888888854210 0 011111 12233333 33334445555666667777653 2
Q ss_pred CcceEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEE---EeCCCCEEEE
Q 003271 755 KGECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVAS 824 (835)
Q Consensus 755 ~~~~i~~l~~~~~~V~sv~fsp----dg---~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la---~spdg~~LaS 824 (835)
..+..+.+.. .+...+.|.- ++ ..+++++.++.+.||.=.+-..-....| ...+|. |..-...|++
T Consensus 272 ~l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~--~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 SLRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPH--VPVALSVANFNGLKGLIVS 347 (418)
T ss_pred eEEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCC--CCEEEEecccCCCCceEEE
Confidence 2223333322 2222222221 22 2488999999999996333222211112 222333 2233458888
Q ss_pred EECCCcEEE
Q 003271 825 ASHDKCVKI 833 (835)
Q Consensus 825 gs~DG~V~I 833 (835)
-+.||.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 888888765
No 381
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.04 E-value=0.00094 Score=47.16 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 003271 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (835)
Q Consensus 9 ~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~ 39 (835)
+..|+..|++||.+.|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4579999999999999999999999998765
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.00 E-value=0.038 Score=65.71 Aligned_cols=214 Identities=7% Similarity=0.017 Sum_probs=106.9
Q ss_pred eEEEEEcCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEECC------CeEEEEecCCCCceeEEeec---CCCCeEEE
Q 003271 578 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLRTFTG---HSTTVMSL 646 (835)
Q Consensus 578 ~I~VWd~~t~~~i~--~l~~h~~~V~sv~fspdg~~Latgs~D------g~I~IWDl~t~~~~~~~~~~---h~~~V~sl 646 (835)
.+..||..+.+-.. .+...... .+++. -++.+++.|+.+ ..+..||..+... ..... ..... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence 56778877654332 22111111 12222 256677777754 3577888877643 11111 11111 22
Q ss_pred EEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeE--eecCceE-EEEecCCCEEEEEEcC-----------------
Q 003271 647 DFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGV--FKSGATQ-MRFQPRLGRILAAAIE----------------- 701 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~~~--~~~~i~~-l~fsp~~~~ll~~s~d----------------- 701 (835)
+.. ++.+++.|+.++ .+..||..+.+.... +..+... ....-++..+++|+.+
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 222 245777777654 488899887654332 2211111 1122244555555543
Q ss_pred ------CcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCcceEEEeecCC
Q 003271 702 ------NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCTG 766 (835)
Q Consensus 702 ------g~I~IwDl~t~~~i--~~l~~h~~~I~sl~fspdg~~Lasgs-D------g~I~IwDl~t~~~~~~i~~l~~~~ 766 (835)
..+..||.++.+-. ..+...... .+++. -++++.+.|+ + ..|..||..+......+..+....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 24777888765432 222111111 12222 3455555555 3 246789888721223333333333
Q ss_pred CceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEEE
Q 003271 767 NKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLT 802 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~ 802 (835)
.....+++ ++...++|+.++ .+..||..+.+...
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 33333333 667777888787 78899998887663
No 383
>PRK10115 protease 2; Provisional
Probab=96.99 E-value=0.48 Score=57.82 Aligned_cols=198 Identities=9% Similarity=0.018 Sum_probs=105.4
Q ss_pred CCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 003271 598 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 667 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~i 667 (835)
-.+..+.|+||+++|+.+... ..|++.|+.++......+.+- -..++|.++++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778899999988876432 368889998775322222221 14699999988888776533 37888
Q ss_pred EECCCC--eeeeEeec--C-ce-EEEEecCCCEEEEEEc---CCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 668 WSINNG--SCAGVFKS--G-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 668 wDl~s~--~~~~~~~~--~-i~-~l~fsp~~~~ll~~s~---dg~I~IwDl~--t~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
+++.++ +....+.. . .. .+..+.++.++++.+. ++.+.+++.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 999887 33333332 1 22 2233447777666554 3578888853 3332222221222222222 223333
Q ss_pred EEEEe-C-C--eEEEEEcCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEEEe
Q 003271 737 LASVS-D-E--LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 803 (835)
Q Consensus 737 Lasgs-D-g--~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l 803 (835)
++... + . .|...++... .....+..+ ...+..+.+..+ ..+++...++ .|++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 2 2 3444444421 112233333 236777777732 3344444455 566667655544443
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.98 E-value=1.3 Score=54.02 Aligned_cols=269 Identities=11% Similarity=0.063 Sum_probs=150.6
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCc-
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY- 631 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~- 631 (835)
+.++.--.|+..++.-+.+..|.-..+|... ++.+.+--.-+..-.-+.|+.+ ...|+++. .+.+++.-++.-..
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL 706 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc
Confidence 3445555566555444444456666666543 3333221111111111223332 33455554 45577777664322
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--------------CcEEEEECCCCeeeeEeec-------CceEEEEec
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------------SEIRYWSINNGSCAGVFKS-------GATQMRFQP 690 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--------------g~I~iwDl~s~~~~~~~~~-------~i~~l~fsp 690 (835)
.+++.. -......+++.+... ++.+.+.. ..++++|-++.+.+..++. .+.+..|..
T Consensus 707 ~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~ 784 (1096)
T KOG1897|consen 707 HIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTD 784 (1096)
T ss_pred ceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecC
Confidence 234433 334566677776432 33222211 2467788777776655442 244445777
Q ss_pred C-CCEEEEEEc----------CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcc
Q 003271 691 R-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE 757 (835)
Q Consensus 691 ~-~~~ll~~s~----------dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~ 757 (835)
+ +.++++|+. .|.|.+|.......+..... -.+.+.+++.. +|++|| +-...|++|++.+. +
T Consensus 785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA-~In~~vrLye~t~~---~ 859 (1096)
T KOG1897|consen 785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA-GINQSVRLYEWTTE---R 859 (1096)
T ss_pred CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-ecCcEEEEEEcccc---c
Confidence 7 566666663 37788887766332222211 23444444432 455444 44778999999887 5
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 758 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 758 ~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I--wDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.++.-..+...+..+...-.+..|++|..-+.|.+ |+-..+... .-..+..+++++.+-.+.. ++.+..+|.+++
T Consensus 860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFT 938 (1096)
T ss_pred eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EEeecccccEEE
Confidence 55555667788889999999999999998885555 555555455 3346778888888865554 444556666654
No 385
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.96 E-value=0.012 Score=71.19 Aligned_cols=131 Identities=9% Similarity=0.081 Sum_probs=92.5
Q ss_pred cCCcEEEEECCCCeEEEEEcCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEEcCCCCCcceEEE---eecCCCce
Q 003271 700 IENYISILDVETQVCRLKLQGHKNQ-VHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHE---LSCTGNKF 769 (835)
Q Consensus 700 ~dg~I~IwDl~t~~~i~~l~~h~~~-I~sl~fsp------dg~~LasgsDg~I~IwDl~t~~~~~~i~~---l~~~~~~V 769 (835)
..+.|+-.|++.|+.+..+..|... |..++-.. ....++.-++..|..||.|-... +++.. .......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccccCCCc
Confidence 3578999999999999999877654 55554321 23455555688999999987531 23321 11234567
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.|++-+.+| +||+|+.+|.|++||-...... .+.+-..+|.+|..+.||++|++.|.. .|.|
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlL 643 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLL 643 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEE
Confidence 777777777 5999999999999995433322 556778999999999999988877643 4444
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.96 E-value=0.002 Score=44.69 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (835)
.+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566678999999999999999999999999999996
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.92 E-value=0.27 Score=55.71 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=56.3
Q ss_pred EEEEeCCCCEEEEEeCCCeEEE---EEcC-----CCeEEEEec---cCC--CCeEEEEEC-----------CCCCEEEEE
Q 003271 560 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFS-----------PSLSRLATS 615 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~V---Wd~~-----t~~~i~~l~---~h~--~~V~sv~fs-----------pdg~~Latg 615 (835)
+++.+|++++||.+..+..|.+ |+.. ......... .+. ..|+++.|- +|...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999987776665 5431 122222211 122 567777664 346789999
Q ss_pred ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 003271 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (835)
Q Consensus 616 s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs 649 (835)
..+|.|++|... +.. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence 999999999875 333 33333466777777664
No 388
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.92 E-value=0.0027 Score=44.01 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.5
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
++.+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778999999999999999999999999999996
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.88 E-value=0.052 Score=64.58 Aligned_cols=229 Identities=12% Similarity=0.085 Sum_probs=118.5
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECC------CeEEEEecCCCCce
Q 003271 566 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (835)
Q Consensus 566 dg~~Lasgs~D------g~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~D------g~I~IWDl~t~~~~ 632 (835)
.+.+++.||.+ ..|..||..+........- +...-.++++. ++.++++|+.| .++.+||..++...
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34456666665 3677888877643322211 22223344444 45788889888 36788888876631
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEee--cCceEEE-EecCCCEEEEEEcC---
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFK--SGATQMR-FQPRLGRILAAAIE--- 701 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~~~~~--~~i~~l~-fsp~~~~ll~~s~d--- 701 (835)
....-...-..+....-+..+.+.|+.|| .|..||..+.+....-. ....... ..-++..+++|+.+
T Consensus 363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 11111111111111122356888888886 47778887765433221 1222222 23344555566644
Q ss_pred ---CcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 702 ---NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 702 ---g~I~IwDl~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs-Dg-----~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
..+..||..++.-.. .+..-... ..++. -++.+.+.|+ |+ +|..||..+..- ..+.........+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCCceeecCCccccccc-ceEEE-ECCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence 357788887764432 22211111 12333 2455556665 55 478888877521 22221222222222
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEE
Q 003271 771 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLT 802 (835)
Q Consensus 771 sv~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~ 802 (835)
.+. -++...++|+.|+ +|..||..+.+...
T Consensus 518 ~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 518 VVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred EEE--ECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 222 2455666777665 78888887777653
No 390
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.82 E-value=0.037 Score=50.48 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=67.6
Q ss_pred EEEEEEeC---CC-CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 558 V~sl~fSp---dg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
|+++++.. || +.|++|+.|..|+||+-+ +.+..+..+ +.|++++-... ..|+.+..+|+|-+|+-.... .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCccee--e
Confidence 66666654 43 469999999999999855 566666544 55777776655 679999999999999865422 2
Q ss_pred EEeecCCCCeEEEEEcC---CCCcEEEEEeCCCcEE
Q 003271 634 RTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIR 666 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp---~g~~ll~sgs~Dg~I~ 666 (835)
+.-. +..+.++.+.. +|..-|++|-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 23366665543 4445566787788764
No 391
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.81 E-value=0.05 Score=64.69 Aligned_cols=206 Identities=10% Similarity=0.041 Sum_probs=106.5
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEee--cCceEEEE-e
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFK--SGATQMRF-Q 689 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~s~~~~~~~~--~~i~~l~f-s 689 (835)
..|..||..++......-........++++.. +.++++|+.| ..+..||..+.+....-+ ..-..... .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence 35777887766432111111223344555553 3688888888 367889988776443211 11111222 2
Q ss_pred cCCCEEEEEEcCC-----cEEEEECCCCeEEEEEcCCCCCeEEE-EEcCCCCEEEEEe-CC------eEEEEEcCCCCCc
Q 003271 690 PRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DE------LVRVWSIGSGSKG 756 (835)
Q Consensus 690 p~~~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~h~~~I~sl-~fspdg~~Lasgs-Dg------~I~IwDl~t~~~~ 756 (835)
-+|...++|+.|| .|..||..+.+-...-. ......+. ...-+|.+.++|+ ++ +|..||..++.-
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W- 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW- 456 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-
Confidence 2345566677765 47788887653322111 11112221 1223566666666 43 688888877621
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEEeccCCCCeeEEEE-eCCCCEEEEEECCCc
Q 003271 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKC 830 (835)
Q Consensus 757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~~~V~~la~-spdg~~LaSgs~DG~ 830 (835)
..+........... ++ .-++...++||.++ +|..||..+.+...+..-......+.. .-++.+.+.|+.||.
T Consensus 457 ~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 457 TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred eecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 12222221111222 22 22555666677665 588999999887755432222222211 225677888888874
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.78 E-value=0.37 Score=51.27 Aligned_cols=189 Identities=10% Similarity=0.018 Sum_probs=107.6
Q ss_pred CeEEEEEcCCCCcEEEEE--eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEE-CCCCeEE-EE
Q 003271 642 TVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILD-VETQVCR-LK 717 (835)
Q Consensus 642 ~V~sl~fsp~g~~ll~sg--s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwD-l~t~~~i-~~ 717 (835)
.+.+.++++++..+.+.. .....++++...................|++++...++...+....++. ...+... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998777766 3344555555443222222223577788999966666666566666663 3333221 12
Q ss_pred EcC--CCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 718 LQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 718 l~~--h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~------~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
+.. ....|..+.++|||..++... ++.|.|--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 122899999999999888776 567777766533222 11222223356889999999998777766
Q ss_pred cCCe-EEE-EEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 786 CYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 786 ~dg~-I~I-wDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
..+. +.. +....+....+..-...+..++...+...++.. .++.|
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t-~~~~~ 231 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT-DDGGV 231 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE-CCCcE
Confidence 6552 333 444444433332333333344444444443333 34433
No 393
>PRK13684 Ycf48-like protein; Provisional
Probab=96.77 E-value=1.3 Score=49.22 Aligned_cols=268 Identities=7% Similarity=0.000 Sum_probs=131.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe----ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l----~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~ 630 (835)
...+++|+|..+.+-+++|. ++.|.. ..+.++.-... ......+.++.|..+ ..+++ +..+. ||...++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCCC
Confidence 55799999986666666664 454332 11222222211 112334778888654 34444 45554 33333332
Q ss_pred ceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEecCCCEEEEEEcCCc
Q 003271 631 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 631 ~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fsp~~~~ll~~s~dg~ 703 (835)
....... ........+.....+ .+++++ ..|.|.. ..+.++.-..+ ...+..+.+.+++. +++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~g-~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPG-TAEMAT-NVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCC-cceeee-ccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCce
Confidence 2122211 011112222222222 233333 3343322 11222221111 23467788888754 445555565
Q ss_pred EEEE-ECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEE
Q 003271 704 ISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 704 I~Iw-Dl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L 781 (835)
+..- |-....-..........++++.+.+++..++++..|.+++=....+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5432 2221111112223456789999999999888887886653233333221211110 11224578889998776 5
Q ss_pred EEEEcCCeEEEEEcCCCcEE-Ee---ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 782 LVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~~~~-~l---~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++++.+|.|.. ....++.- .. ..-....+.+.|..+++.++ .+..|.|..|+
T Consensus 274 ~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 66666776653 44544433 22 12224577888877666655 55678877664
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.68 E-value=1.1 Score=48.77 Aligned_cols=266 Identities=9% Similarity=0.065 Sum_probs=122.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc-CCCeEEEEe--ccC---CCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~-~t~~~i~~l--~~h---~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
-...+.+|.|..+..-+++|. .+.| +.. +.|+.-... ... .-...+|.|..+ ..+++ +..+ +.+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC
Confidence 345799999996565566654 4543 333 222221111 111 124667888643 34444 4455 3333333
Q ss_pred CCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEEEEecCCCEEEEEEc
Q 003271 628 NPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 628 t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l~fsp~~~~ll~~s~ 700 (835)
.+.. ...+. .-......+....++ ..++++ ..|.|+. ..+.++.-.. ..+.+..+..++++.+++++..
T Consensus 89 gG~t-W~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 89 GGKT-WERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp TTSS--EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred CCCC-cEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 3332 22221 122333444444333 233333 3444332 2222322111 1244667777888877776655
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEE----EeecCCCceEEEEEeC
Q 003271 701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH----ELSCTGNKFHSCVFHP 776 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~----~l~~~~~~V~sv~fsp 776 (835)
...+.-||--...-...-......|.++.|.+++.+.+.+..|.|++=+..... .... .+......+..++|.+
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecC
Confidence 555567776533222222235678999999999988887778888887722110 1111 1222344588999998
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEEEec----cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~~l~----~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
++. +.+++..|.| +...+.++.-... .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus 243 ~~~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 243 PNE-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp SS--EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CCC-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 876 5555556644 3455666544222 3345688899876655555 4578887665
No 395
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.45 Score=50.61 Aligned_cols=160 Identities=14% Similarity=0.195 Sum_probs=107.7
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
+.+-...|.++.|+|+.+.|++......-.||=..+|..+.++.-. -.....|.|.-++.++++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455555999999999999998888888888888889998887421 123456788888888888777888988887765
Q ss_pred Ccee---------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-ee------------eEeecCceEEE
Q 003271 630 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA------------GVFKSGATQMR 687 (835)
Q Consensus 630 ~~~~---------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~------------~~~~~~i~~l~ 687 (835)
...+ ......+.....++|.|..+.+++ +-+..-+.||.+.... .+ ..+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3221 111222566889999999776664 4445666666654332 11 11224477788
Q ss_pred EecCCCEEEEEEcC-CcEEEEECCC
Q 003271 688 FQPRLGRILAAAIE-NYISILDVET 711 (835)
Q Consensus 688 fsp~~~~ll~~s~d-g~I~IwDl~t 711 (835)
|++..+.+++-+.+ +.+.-.|...
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCC
Confidence 88877777776654 5566666653
No 396
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0078 Score=68.92 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=73.6
Q ss_pred ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271 680 KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 757 (835)
Q Consensus 680 ~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~-sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~ 757 (835)
...+..+.|+|.-..++.+..+|.|.++.+. ...+.++.-|...++ ++||.|||++|++|- ||+|++.|+.++ .
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~---~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG---G 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC---C
Confidence 3557778899999999999999999999988 777888876777777 999999999999998 999999999987 3
Q ss_pred eEEE-eecCCCceEEEEEe
Q 003271 758 CIHE-LSCTGNKFHSCVFH 775 (835)
Q Consensus 758 ~i~~-l~~~~~~V~sv~fs 775 (835)
.+.. .......|.++.|.
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 3333 22234556666665
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.60 E-value=0.13 Score=61.20 Aligned_cols=175 Identities=7% Similarity=-0.052 Sum_probs=86.2
Q ss_pred CcEEEEEeCC------CcEEEEECCCCeeeeEe--ecC-ceEEEEecCCCEEEEEEcCC-----cEEEEECCCCeEEE--
Q 003271 653 EDLLCSCDNN------SEIRYWSINNGSCAGVF--KSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL-- 716 (835)
Q Consensus 653 ~~ll~sgs~D------g~I~iwDl~s~~~~~~~--~~~-i~~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~~~i~-- 716 (835)
+.+++.|+.+ ..+..||..+......- ..+ .......-++..+++|+.++ .+..||..+.+-..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4577777643 35788998876543211 111 11122233455556666543 48889988654322
Q ss_pred EEcCCCCCeEEEEEcCCCCEEEEEe-CC-----------------------eEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 717 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 717 ~l~~h~~~I~sl~fspdg~~Lasgs-Dg-----------------------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
.+.........+. -+|.+.+.|+ ++ .|..||..+..- ..+..+... .....
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~~~--r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFWTG--TIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCCcc--cccCc
Confidence 1111111111222 2566666665 42 477788776521 111111111 11111
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEEcCC-CcEEEec---cCCCCeeEEEEeCCCCEEEEEECCC--cEEEe
Q 003271 773 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLS---AHDKLVSSLAASTVNGMVASASHDK--CVKIW 834 (835)
Q Consensus 773 ~fspdg~~L~sgs~d------g~I~IwDl~~-~~~~~l~---~h~~~V~~la~spdg~~LaSgs~DG--~V~IW 834 (835)
+..-++...++|+.+ ..|..||..+ .+..... ...... +++. -++++.++||.|| .|..|
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~-~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTIL-HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEE-ECCEEEEEeeecceeehhhc
Confidence 222345555556543 2578899987 5655322 222222 2222 2688899999888 44444
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.48 E-value=1.5 Score=46.47 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=113.1
Q ss_pred eEEEEEecCCCCC-EEEEEEeCCCCEEEEEeCCC--eEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEECCCe
Q 003271 545 FTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRT 620 (835)
Q Consensus 545 ~~~i~~l~gH~~~-V~sl~fSpdg~~Lasgs~Dg--~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~ 620 (835)
+..+..++..... .-.+.|..+|.++-+.+.-| .|+.+|+++++......-.. -.--.|+...| +++...=.++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCe
Confidence 3444444433333 34677877888888887666 78999999998875553222 12233444433 33344446789
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------CceEEEEecCC
Q 003271 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------GATQMRFQPRL 692 (835)
Q Consensus 621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------~i~~l~fsp~~ 692 (835)
+.+||..+-+. +..+. ....=+.++. ++..++.| +....|+++|..+.+..+.+.. .+..+.+. +
T Consensus 112 ~f~yd~~tl~~-~~~~~-y~~EGWGLt~--dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~ 184 (264)
T PF05096_consen 112 GFVYDPNTLKK-IGTFP-YPGEGWGLTS--DGKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--N 184 (264)
T ss_dssp EEEEETTTTEE-EEEEE--SSS--EEEE--CSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--T
T ss_pred EEEEccccceE-EEEEe-cCCcceEEEc--CCCEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--c
Confidence 99999987653 44443 2345567763 45556544 4477899999988877665541 24445555 3
Q ss_pred CEEEEEE-cCCcEEEEECCCCeEEEEEcC------------C---CCCeEEEEEcCCCCEEEEEeC
Q 003271 693 GRILAAA-IENYISILDVETQVCRLKLQG------------H---KNQVHSVCWNTSGEYLASVSD 742 (835)
Q Consensus 693 ~~ll~~s-~dg~I~IwDl~t~~~i~~l~~------------h---~~~I~sl~fspdg~~LasgsD 742 (835)
+.+++-- ....|...|..+|+++..+.- + ..-...|+|+|....|...+.
T Consensus 185 G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 185 GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5555544 467899999999998876531 1 245789999987766665553
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.25 Score=52.08 Aligned_cols=170 Identities=14% Similarity=0.146 Sum_probs=109.2
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEE-cCC-cEEEEECCCCeEEEEEcCCCC--C
Q 003271 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAA-IEN-YISILDVETQVCRLKLQGHKN--Q 724 (835)
Q Consensus 649 sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s-~dg-~I~IwDl~t~~~i~~l~~h~~--~ 724 (835)
..++.+.+++.+.+|.|..- ..+......++++|....-++.. .-| ...+||.........+...+. .
T Consensus 44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf 115 (366)
T COG3490 44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF 115 (366)
T ss_pred ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence 45555555555555544211 11233456677888765544433 333 467888887655544432221 1
Q ss_pred eEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------
Q 003271 725 VHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----------- 787 (835)
Q Consensus 725 I~sl~fspdg~~Lasgs------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d----------- 787 (835)
.-.=+|++||.+|++.. -|.|-|||.+.+ ...+-++..|+-....+.|.+||+.++++...
T Consensus 116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~ 193 (366)
T COG3490 116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE 193 (366)
T ss_pred ecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence 22347999999999876 258999999854 36778888899999999999999988887541
Q ss_pred -------CeEEEEEcCCCcEE---Eec--cCCCCeeEEEEeCCCCEEEEEECC
Q 003271 788 -------ETLELWNMTENKTL---TLS--AHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 788 -------g~I~IwDl~~~~~~---~l~--~h~~~V~~la~spdg~~LaSgs~D 828 (835)
-++.+.|..++.++ ++. .+.-.|..++..+||..++.|-..
T Consensus 194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 14555565566555 233 355678899999988877665443
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.44 E-value=2.1 Score=47.53 Aligned_cols=66 Identities=8% Similarity=-0.009 Sum_probs=41.1
Q ss_pred CceEEEEEeCC-------CCEEEEEEcCCeEEEEEcCCCcEE----Ee-ccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 767 NKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TL-SAHDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 767 ~~V~sv~fspd-------g~~L~sgs~dg~I~IwDl~~~~~~----~l-~~h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
..+..+.|... +.++++.-..+.|...+++++..+ .+ ......+..|++.|||.++++.+.+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 45666666543 334444444558888888755332 22 23445899999999999999888888875
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.35 E-value=2.6 Score=47.65 Aligned_cols=218 Identities=9% Similarity=0.046 Sum_probs=103.9
Q ss_pred CCCEEEEEE-CCCeEEEEecCCCC-c--eeEEeec---CC----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEEC
Q 003271 608 SLSRLATSS-ADRTVRVWDTENPD-Y--SLRTFTG---HS----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSI 670 (835)
Q Consensus 608 dg~~Latgs-~Dg~I~IWDl~t~~-~--~~~~~~~---h~----~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl 670 (835)
+.++|+..+ ..+.|+|.|+.+.. . ..+++.. +. .....+...|+|+ +++++- .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456777776 57889999998432 1 1222221 10 1223344457765 555542 2356888888
Q ss_pred CCCeeeeEeecC------ceEEEEecCCCEEEEEEc--------------------CCcEEEEECCCCeEEEEEcCCCC-
Q 003271 671 NNGSCAGVFKSG------ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 723 (835)
Q Consensus 671 ~s~~~~~~~~~~------i~~l~fsp~~~~ll~~s~--------------------dg~I~IwDl~t~~~i~~l~~h~~- 723 (835)
++.+.......+ ...+-|.|..+.+++... ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 887777666532 456778888888777542 34699999999999988874332
Q ss_pred -CeEEEEE--cCCCCEEEEEe--CCeEEEEEcCCCCCc--ceEEEeecC-----------------CCceEEEEEeCCCC
Q 003271 724 -QVHSVCW--NTSGEYLASVS--DELVRVWSIGSGSKG--ECIHELSCT-----------------GNKFHSCVFHPTFP 779 (835)
Q Consensus 724 -~I~sl~f--spdg~~Lasgs--Dg~I~IwDl~t~~~~--~~i~~l~~~-----------------~~~V~sv~fspdg~ 779 (835)
....|.| .|+..+-++++ ...|..|--...... +.+..+... ..-|+.+.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 2445666 45555555554 555555544222111 122222111 24578999999999
Q ss_pred EEEEEEc-CCeEEEEEcCCCcEEEe-----cc---------------CCCCeeEEEEeCCCCEEEEEE
Q 003271 780 SLLVIGC-YETLELWNMTENKTLTL-----SA---------------HDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 780 ~L~sgs~-dg~I~IwDl~~~~~~~l-----~~---------------h~~~V~~la~spdg~~LaSgs 826 (835)
+|++++. +|.|+.||+.....-++ .+ -.+...-|..|.||+.|...+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 67999999987432111 11 112346678888998766543
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.045 Score=61.72 Aligned_cols=152 Identities=14% Similarity=0.187 Sum_probs=96.6
Q ss_pred EeCCCCEE-EEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC-------EEEEEECCCeEEEEecCCCCceeE
Q 003271 563 FSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 563 fSpdg~~L-asgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~-------~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
...+..+| .++..-..|+--|++.|+.+...+-|.+ |.-+.+.|+.+ .-+.|-.|..|+-||.+-....
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-- 417 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-- 417 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--
Confidence 33444544 4455667788889999999999987776 77778887643 2234555666777776522210
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVC 714 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~ 714 (835)
-++|... +. +.++ ....|.+ ....++|++|+.+|.|++||--....
T Consensus 418 ----------kl~~~q~-kq-y~~k---------------------~nFsc~a-TT~sG~IvvgS~~GdIRLYdri~~~A 463 (644)
T KOG2395|consen 418 ----------KLAVVQS-KQ-YSTK---------------------NNFSCFA-TTESGYIVVGSLKGDIRLYDRIGRRA 463 (644)
T ss_pred ----------eeeeeec-cc-cccc---------------------cccceee-ecCCceEEEeecCCcEEeehhhhhhh
Confidence 1111100 00 0000 0011111 12247788999999999998743344
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271 715 RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 751 (835)
Q Consensus 715 i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~ 751 (835)
...+.+...+|..|..+.+|++|++.++..+.+.++.
T Consensus 464 KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 4556778889999999999999999999888888764
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.25 E-value=1.5 Score=53.85 Aligned_cols=224 Identities=11% Similarity=0.068 Sum_probs=113.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC--------eEEEEECC----------------CCCEEEEEECCCeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 622 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~--------V~sv~fsp----------------dg~~Latgs~Dg~I~ 622 (835)
+..|+.++.++.|.-.|..+++.+.++...... ...+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777777889999999999988776432211 11233321 344788888999999
Q ss_pred EEecCCCCceeEEeecCCCCeE-------------EEEEcC--CCCcEEEEEe----------CCCcEEEEECCCCeeee
Q 003271 623 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 677 (835)
Q Consensus 623 IWDl~t~~~~~~~~~~h~~~V~-------------sl~fsp--~g~~ll~sgs----------~Dg~I~iwDl~s~~~~~ 677 (835)
-.|.++++.+.. +. ..+.|. .+.-.| .++.++ .|+ .+|.|+-+|.++|+.+.
T Consensus 274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999999886432 21 111110 011111 123334 443 26889999999999988
Q ss_pred EeecCceEEE-EecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271 678 VFKSGATQMR-FQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 678 ~~~~~i~~l~-fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~ 754 (835)
.+........ ..+.+.....++.+. ....+|.+.+....-. +... ..+....+...... .+.|.-.|.++++
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~----pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQT----PDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCcc----ccccCCccccCcccccceEEEEeCCCCc
Confidence 7763211100 011222221121111 3334555544432211 1111 01100000000001 3456666666662
Q ss_pred CcceEEEeec--CC-------CceEEEEEeC-CC---CEEEEEEcCCeEEEEEcCCCcEE
Q 003271 755 KGECIHELSC--TG-------NKFHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 755 ~~~~i~~l~~--~~-------~~V~sv~fsp-dg---~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
..-.+.. |. ....-+.+.. +| +.++.++.+|.++++|.++++.+
T Consensus 426 ---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 426 ---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred ---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 2222211 11 1111122222 45 37889999999999999999977
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.0052 Score=62.49 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=80.7
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEe---ecCce-E
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF---KSGAT-Q 685 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~---~~~i~-~ 685 (835)
.|..-+.||.|+-+++...+...+....|...-.. +....-+++|+.+|.|++|...-.-. ...+ ...+. .
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceee----cccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34445678888888877544323322222222111 12223456788899999998873211 1111 11121 2
Q ss_pred EEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEE--e-CCeEEEEEcCCC
Q 003271 686 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGSG 753 (835)
Q Consensus 686 l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~I~sl~fspdg~~Lasg--s-Dg~I~IwDl~t~ 753 (835)
+..-.++.+.++++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|+.. + |..++.|++...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2223334577888899999999999888777776676 555555555555666555 4 666777766543
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.20 E-value=0.72 Score=50.25 Aligned_cols=201 Identities=14% Similarity=0.158 Sum_probs=95.5
Q ss_pred CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (835)
Q Consensus 541 ~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg 619 (835)
.+.++..+..-..-.+....+....++..++ ++..|.|+.= .+.++. ......-.+.+..+..++||+++++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 3445555432222223344444444443333 3444544332 222322 222344557789999999999999887766
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCeeeeE--e-----ecCceEEEEecC
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGSCAGV--F-----KSGATQMRFQPR 691 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD-l~s~~~~~~--~-----~~~i~~l~fsp~ 691 (835)
...-||--..... .........|..+.|.|++. +.+ ....|.|++=+ ....+.-.. . .-.+..++|.++
T Consensus 167 ~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 167 FYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEEecCCCccce-EEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 6677876543332 22223467899999999966 433 33688888877 222222111 1 123678899987
Q ss_pred CCEEEEEEcCCcEEEEECCCCeEEEE---EcCCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003271 692 LGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGEYLASVSDELVRVW 748 (835)
Q Consensus 692 ~~~ll~~s~dg~I~IwDl~t~~~i~~---l~~h~~~I~sl~fspdg~~LasgsDg~I~Iw 748 (835)
+. +.+++..|.+.+ ....++.-.. ...-...++.|.|.++.+-++.|.+|.|.-|
T Consensus 244 ~~-~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NE-IWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S--EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CC-EEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 55 444555554443 3333332222 2234557889999888888888889987665
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.13 E-value=0.56 Score=48.18 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=88.2
Q ss_pred CCeEEEEECCCCCEEEEEECC---------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003271 598 QWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~D---------g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iw 668 (835)
....+-..+|+|++++-.-.| |.++.|-.... +..+...-.--..++|+.+.+.+.++-+.+-+|.-|
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 456667788999985433222 44555544321 222222233446788998877777777888888778
Q ss_pred E--CCCCee-----eeEeec-------CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271 669 S--INNGSC-----AGVFKS-------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733 (835)
Q Consensus 669 D--l~s~~~-----~~~~~~-------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd 733 (835)
| ..+|.. +..++. ....+++..+|+.++++-..++|..+|..+++.+..+.-....|+|+||--.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 7 555432 222221 1234556667777777778899999999999999999888999999999643
No 407
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.11 E-value=3.3 Score=46.60 Aligned_cols=193 Identities=11% Similarity=0.080 Sum_probs=105.1
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC-
Q 003271 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS- 640 (835)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h--~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~- 640 (835)
.-|+ .++++..||.|.-.|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++++|..++.. +..+....
T Consensus 66 ~~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~ 142 (370)
T COG1520 66 DGDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGS 142 (370)
T ss_pred eeCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCC
Confidence 3355 4445577888888898888866433222 12233333333665 77788899899999877765 33333333
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-E--EE--EecCCCEEEEEEc--CCcEEEEECCCCe
Q 003271 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-Q--MR--FQPRLGRILAAAI--ENYISILDVETQV 713 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-~--l~--fsp~~~~ll~~s~--dg~I~IwDl~t~~ 713 (835)
-.+..-.+..+ ..++.++.++.+...|..+++....+..... . +. .....+.++.+.. ++.+.-+|.+++.
T Consensus 143 ~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 11112222223 2344444689999999998888666443211 1 11 1123455666666 6678888888887
Q ss_pred EEEEEcCC----CCCe--E-EE---EEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec
Q 003271 714 CRLKLQGH----KNQV--H-SV---CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 764 (835)
Q Consensus 714 ~i~~l~~h----~~~I--~-sl---~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~ 764 (835)
.....+.+ ...+ . .+ ...-++..++...++.+...|..++ +.+-.+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEec
Confidence 77664311 1111 0 00 1111233333333777888888887 44444443
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.07 E-value=1.8 Score=46.41 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=114.3
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcC-------CCeEEEEecc-----CCCCeEEEEECCCCC------------EEE
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 613 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-------t~~~i~~l~~-----h~~~V~sv~fspdg~------------~La 613 (835)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999888888788999999986 1233444432 234677888875322 367
Q ss_pred EEECCCeEEEEecCCCCc----eeEEee-cCCCCe-EEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeee--eEeecC-
Q 003271 614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCA--GVFKSG- 682 (835)
Q Consensus 614 tgs~Dg~I~IWDl~t~~~----~~~~~~-~h~~~V-~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~~~~- 682 (835)
.+++||+|.-|...-... ....+. .....| ..+++.. .+..++++--..++|.+||-.=.+.. ..+..+
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 788999999998532211 112221 112333 3455543 34555555556789999986533221 111111
Q ss_pred ------------------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcC------CCCE
Q 003271 683 ------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 736 (835)
Q Consensus 683 ------------------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fsp------dg~~ 736 (835)
++...-.++...-+.+..-|.|.+||.. +..+.++. +.-..-+.|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0111111121222222334689999986 45555553 2233445666644 4566
Q ss_pred EEEEe-CCeEEEEEcCCCCCcceEEEee
Q 003271 737 LASVS-DELVRVWSIGSGSKGECIHELS 763 (835)
Q Consensus 737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~ 763 (835)
|+.-- ||+|.+||..++ ..+..+.
T Consensus 264 LVGNFGDG~InaFD~~sG---~~~g~L~ 288 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG---AQLGQLL 288 (336)
T ss_pred EEeecCCceeEEecCCCC---ceeeeec
Confidence 66544 999999999887 4444443
No 409
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.02 E-value=2.5 Score=44.57 Aligned_cols=248 Identities=11% Similarity=-0.000 Sum_probs=153.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe-
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF- 636 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~- 636 (835)
-..++-.+||..-+++...+.|--.|..+++....--+....-..|..-||+...++-+.. -|.-.|-++.+.....+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567888999888888888888888999998876665666667788889998877664433 45555555444211111
Q ss_pred -ecCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEE
Q 003271 637 -TGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 637 -~~h~~~V~sl~fsp~g~~ll~sgs~---------Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
...........|.+.|. +-+++.. .+.|++|+...+ .....+|..|+|...++.-.++.|-.
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccceEE
Confidence 22335677888999876 5445541 123444443322 33677889999998888888888888
Q ss_pred EECCCCeEEEEE--cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 707 LDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 707 wDl~t~~~i~~l--~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
.|..++...... .........+--+|.|+.-++.. .+.+..||-.... -.-..+.+....-.++.+...++.-++
T Consensus 215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred cccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEee
Confidence 888766322211 11123344555667788777766 7788888876542 122234444555666666666665554
Q ss_pred EEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271 784 IGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 816 (835)
Q Consensus 784 gs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~s 816 (835)
-...+.|.-||-++.....+......+..+.+.
T Consensus 293 ea~agai~rfdpeta~ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 293 EADAGAIGRFDPETARFTVLPIPRPNSGNIQLD 325 (353)
T ss_pred ccccCceeecCcccceEEEecCCCCCCCceecc
Confidence 455567777777766655444333333334433
No 410
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.01 E-value=0.26 Score=45.07 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=63.6
Q ss_pred eEEEE---EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271 643 VMSLD---FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 717 (835)
Q Consensus 643 V~sl~---fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~ 717 (835)
|++++ |..+|..-|+.|+.|..|++|+-. +.+..+. ..+..++-... ..++.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 44444 445666788899999999999876 3444444 44666665555 778999999999999863 33444
Q ss_pred EcCCCCCeEEEEEcC-C--C-CEEEEEe-CCeEE
Q 003271 718 LQGHKNQVHSVCWNT-S--G-EYLASVS-DELVR 746 (835)
Q Consensus 718 l~~h~~~I~sl~fsp-d--g-~~Lasgs-Dg~I~ 746 (835)
++. +..+.++++.. + | .-|++|- +|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 443 34466665543 2 2 2344444 88764
No 411
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=1.5 Score=49.14 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=85.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE----EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
..++|.++.||+|.+.||+--.|++|.+++....+. ..+.+..+..|...+|+.+ .-+|..+..| |-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 456899999999999999999999999998743222 2333445567999999866 5566665555 888888776
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCe
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGS 674 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~ 674 (835)
+..++....|+..|.-..|+++...++.+.+ ..+.+.=+-++++.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 6667888889999999999998765554444 34444445454443
No 412
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.95 E-value=4.1 Score=46.31 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=81.6
Q ss_pred EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcc--eEEEe
Q 003271 685 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHEL 762 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~--~i~~l 762 (835)
.+...+++..++++.....++-||--...-...-......+.++.|.+++.+++++.+|.+.+ ....+.... .+...
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA 321 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec
Confidence 344556655444444333223333321110111122355788999999999998888776544 333332111 22222
Q ss_pred ec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 763 SC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 763 ~~--~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l----~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.. ....+..+.|.+++. +++++..|.|.+.. ..++.-.. ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus 322 ~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 322 DIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred ccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 22 224588899987766 66777777666653 44544322 233456889999777665655 567887665
No 413
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.92 E-value=2.1 Score=47.93 Aligned_cols=185 Identities=15% Similarity=0.173 Sum_probs=112.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC----CCCE--EEEEEC-C---CeEEEEecCCCCceeEE
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSSA-D---RTVRVWDTENPDYSLRT 635 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp----dg~~--Latgs~-D---g~I~IWDl~t~~~~~~~ 635 (835)
...+|+...+++-+.+||+.. +.+..+. .+.+..|.... +++. |+.++. + .+|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 445777788888999999864 5555553 23333333211 3332 444443 2 47999988743323333
Q ss_pred eec-------CCCCeEEEEEc--C-CCCcEEEEEeCCCcEEEEECC---CC----eeeeEee--cCceEEEEecCCCEEE
Q 003271 636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFK--SGATQMRFQPRLGRIL 696 (835)
Q Consensus 636 ~~~-------h~~~V~sl~fs--p-~g~~ll~sgs~Dg~I~iwDl~---s~----~~~~~~~--~~i~~l~fsp~~~~ll 696 (835)
+.. .-..++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|. +.+..+......+.|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12346777764 3 456677788889998888774 23 3466665 3477888898999999
Q ss_pred EEEcCCcEEEEECCC-----CeEEEEEcC--CCCCeEEEEEc--CCC-CEEEEEe--CCeEEEEEcCCC
Q 003271 697 AAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWN--TSG-EYLASVS--DELVRVWSIGSG 753 (835)
Q Consensus 697 ~~s~dg~I~IwDl~t-----~~~i~~l~~--h~~~I~sl~fs--pdg-~~Lasgs--Dg~I~IwDl~t~ 753 (835)
++-.+-.|.-|+.+. ++.+....+ ....|..|++- .++ .||++++ +++..||+....
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999999999999872 233333322 34577777774 333 4677776 889999998764
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.92 E-value=1.2 Score=47.43 Aligned_cols=158 Identities=12% Similarity=0.159 Sum_probs=98.3
Q ss_pred eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003271 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (835)
Q Consensus 593 l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~ 671 (835)
+.+-...|.++.|+|+.+.|++......-.||=..++.. ++++. ..-.....|.|..++. ++++--.+..+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEc
Confidence 345555699999999999998887777666665555554 44332 1223455677776643 55566677888888776
Q ss_pred CCeeeeEe-------------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE---EEEEcCC-------CCCeEEE
Q 003271 672 NGSCAGVF-------------KSGATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGH-------KNQVHSV 728 (835)
Q Consensus 672 s~~~~~~~-------------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h-------~~~I~sl 728 (835)
....+..+ ..+...++|+|.+..++++-+-+-+.||.+..... +.....+ -..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 55322211 23466799999999999999888888877653221 1111111 2346778
Q ss_pred EEcCCCC-EEEEEe-CCeEEEEEcCC
Q 003271 729 CWNTSGE-YLASVS-DELVRVWSIGS 752 (835)
Q Consensus 729 ~fspdg~-~Lasgs-Dg~I~IwDl~t 752 (835)
.|++... +|+.+. ++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 8886544 444444 55666666554
No 415
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.13 Score=62.42 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=71.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeE
Q 003271 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~-~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~ 644 (835)
.+..++.|+..|.|-..|.... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888988899988887542 11122223457899999999999999999999999999998664 677776666655
Q ss_pred EEEE---cCCCCcEEEEEeCCCcEEEEEC
Q 003271 645 SLDF---HPSKEDLLCSCDNNSEIRYWSI 670 (835)
Q Consensus 645 sl~f---sp~g~~ll~sgs~Dg~I~iwDl 670 (835)
.+-+ ..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 5443 33433 5667776665 4543
No 416
>PHA03098 kelch-like protein; Provisional
Probab=95.76 E-value=0.31 Score=57.77 Aligned_cols=157 Identities=10% Similarity=0.055 Sum_probs=75.6
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeeeeEe--ecC-ceEEEEecCCCEEEEEEcC------CcEEEEECCCCeEEEEE
Q 003271 653 EDLLCSCDNN-----SEIRYWSINNGSCAGVF--KSG-ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKL 718 (835)
Q Consensus 653 ~~ll~sgs~D-----g~I~iwDl~s~~~~~~~--~~~-i~~l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i~~l 718 (835)
+.+++.|+.+ ..+..||..+.+....- ..+ ........++..++.|+.+ +.+..||..+.+-...-
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 4566677654 35778888776543221 111 1111122344555555532 45888998865433211
Q ss_pred cCC-CCCeEEEEEcCCCCEEEEEe-CC--------eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-
Q 003271 719 QGH-KNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY- 787 (835)
Q Consensus 719 ~~h-~~~I~sl~fspdg~~Lasgs-Dg--------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d- 787 (835)
... ...-.+++. .++.+++.|+ ++ .+.+||..+..- ..+..+.........+.+ ++..+++|+.+
T Consensus 423 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 498 (534)
T PHA03098 423 PLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKY 498 (534)
T ss_pred CCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence 100 111112222 3455555554 21 388888877521 111111111111222222 56666666554
Q ss_pred ----CeEEEEEcCCCcEEEeccCCCCeeEE
Q 003271 788 ----ETLELWNMTENKTLTLSAHDKLVSSL 813 (835)
Q Consensus 788 ----g~I~IwDl~~~~~~~l~~h~~~V~~l 813 (835)
+.|.+||..+.....+......+..+
T Consensus 499 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 499 EYYINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred CcccceeEEEeCCCCEEEecCCCcccccce
Confidence 47899999888776554443333333
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.092 Score=64.03 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=93.2
Q ss_pred CeEEEEECCCCCEEEE--EECCCeEEEEecCCCCcee----E------EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 599 WITDVRFSPSLSRLAT--SSADRTVRVWDTENPDYSL----R------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 599 ~V~sv~fspdg~~Lat--gs~Dg~I~IWDl~t~~~~~----~------~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
.|..+...+|+...++ .+.+-.|.+||+++-.... . ........+.++.|.|.-....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555555667555443 3445589999987532211 1 11122345678889987666667788899999
Q ss_pred EEECCCCee-eeE--eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCCCEEEE
Q 003271 667 YWSINNGSC-AGV--FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 739 (835)
Q Consensus 667 iwDl~s~~~-~~~--~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~fspdg~~Las 739 (835)
+..+..... +.. +....++++|+|.|..+++|-..|++.-|...-. ....+.+ ....|.||+|...-.++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988764322 222 3345889999999999999999999998876432 2222221 2468999999888888776
Q ss_pred Ee
Q 003271 740 VS 741 (835)
Q Consensus 740 gs 741 (835)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 418
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.67 E-value=4.3 Score=50.34 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=100.6
Q ss_pred cCCCCeEEEEEC---C----CCCEEEEEECCCeEEEEecC------CCC--------ceeEEeec---CCCCeEEEEEcC
Q 003271 595 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP 650 (835)
Q Consensus 595 ~h~~~V~sv~fs---p----dg~~Latgs~Dg~I~IWDl~------t~~--------~~~~~~~~---h~~~V~sl~fsp 650 (835)
....+|..|+|. . ..++|++= ....+.|+... ... .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 45566777611 111 11222221 234677888888
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003271 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 730 (835)
Q Consensus 651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f 730 (835)
....-|+..+..|...||++....... .. ..-+.....|.| ++|... ......++|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCcc----------cCcceeeEe
Confidence 777788888888999999982211110 00 111111122333 233221 145567899
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 731 NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 731 spdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
.++...|+.++...+.++|+.+......+ ........|..+.-++.....+..-....|..+++..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 99988999999889999999887432222 2233456788888888733222222335676777766
No 419
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.64 E-value=2 Score=45.33 Aligned_cols=211 Identities=10% Similarity=0.047 Sum_probs=132.6
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 003271 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~ 678 (835)
.-..|+-.+||...+++...+.|--.|-.+++. ...-.+....-..|..-|++...|+-. ..-|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEe
Confidence 345677888999999988888888888888774 344445556677788889887555322 22566677766554321
Q ss_pred -e-----ecCceEEEEecCCCEEEEEEcC---------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C
Q 003271 679 -F-----KSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 742 (835)
Q Consensus 679 -~-----~~~i~~l~fsp~~~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D 742 (835)
+ ........|.+.|...+++... +.|++|+.. ....-+.||..|+|...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 1 1336678899998888887632 234444433 234456788899999887766 7
Q ss_pred CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCC
Q 003271 743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 820 (835)
Q Consensus 743 g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~ 820 (835)
+.|-..|..++.. +.+..-.........+.-+|.++.-++....+.+..||-...... .+.+....-.++.+...++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777766521 222222222334455666777877777777778888887665544 4444444455555555454
Q ss_pred EEE
Q 003271 821 MVA 823 (835)
Q Consensus 821 ~La 823 (835)
...
T Consensus 289 VW~ 291 (353)
T COG4257 289 VWL 291 (353)
T ss_pred EEe
Confidence 433
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.63 E-value=0.33 Score=55.94 Aligned_cols=172 Identities=12% Similarity=0.172 Sum_probs=105.3
Q ss_pred CCeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEeecCceEEEEecCC----CEEEEEEcCCcEEEEECCC---
Q 003271 641 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKSGATQMRFQPRL----GRILAAAIENYISILDVET--- 711 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs--~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~----~~ll~~s~dg~I~IwDl~t--- 711 (835)
.+|..++|. ||+.++.+.- .+|.+++=|.. .+..| .++..+.|.|-+ ..+++.-....|.||-+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGqF-EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQF-EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeecc-ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 368888887 4566665543 34444433322 12222 457788888863 4678888889999998752
Q ss_pred --CeEEEEEcC-C--CCC--eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 712 --QVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 712 --~~~i~~l~~-h--~~~--I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
.+.+..-.. . .-+ -..+.|+|...+|++-. .+.-.+++++.... .....+ ...+-|.|.+|.+||..|++
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEE
Confidence 222221111 1 111 23578999999998877 44445667665432 222233 45778999999999998888
Q ss_pred EEcCC-eEEEEEcCCCcEE-----EeccCCCCeeEEEEeCCC
Q 003271 784 IGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTVN 819 (835)
Q Consensus 784 gs~dg-~I~IwDl~~~~~~-----~l~~h~~~V~~la~spdg 819 (835)
+-... .-+|||-...... .+..-.+.|.+|.-.-|.
T Consensus 173 AvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ds 214 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDS 214 (671)
T ss_pred EeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccc
Confidence 77665 7889986544322 344556677777654433
No 421
>PHA03098 kelch-like protein; Provisional
Probab=95.62 E-value=0.44 Score=56.44 Aligned_cols=183 Identities=9% Similarity=0.007 Sum_probs=87.9
Q ss_pred CCCEEEEEeCCC------eEEEEEcCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCce
Q 003271 566 DGKLLATGGHDK------KAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 632 (835)
Q Consensus 566 dg~~Lasgs~Dg------~I~VWd~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~~ 632 (835)
++.+++.||.++ .+..||..+.+....- .........+.+ ++.+++.|+.+ ..+.+||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556677776542 5778888775543211 111112222222 56777888765 35778888776532
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEcC--
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAIE-- 701 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~d-- 701 (835)
...-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-. .+ ....+...++..+++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 11100111111122222 24566666632 468889988765443221 11 1111222344445555432
Q ss_pred ------CcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003271 702 ------NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 753 (835)
Q Consensus 702 ------g~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~ 753 (835)
..+.+||..+.+-...-. .....-.+++. -++++++.|+ + +.|.+||..+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 238889988754332111 01111112222 2566666665 2 36777887664
No 422
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.47 E-value=0.028 Score=57.36 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=65.7
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-eccCC-CC
Q 003271 734 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHD-KL 809 (835)
Q Consensus 734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~-V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l~~h~-~~ 809 (835)
+.-+++|+ +|.|++|...-.. .....+...... .+.+.-..++.+.++++.++.|+.|++.-++.+. ...|. ..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 34466666 9999999886321 111111111122 2223334455688899999999999999999884 44555 56
Q ss_pred eeEEEEeCCCCEEEEE--ECCCcEEEeC
Q 003271 810 VSSLAASTVNGMVASA--SHDKCVKIWK 835 (835)
Q Consensus 810 V~~la~spdg~~LaSg--s~DG~V~IWd 835 (835)
+..+..+..+++|+.+ |.|..++.|+
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcc
Confidence 6667777777888888 8888888886
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.36 E-value=6.3 Score=44.35 Aligned_cols=140 Identities=12% Similarity=0.146 Sum_probs=78.5
Q ss_pred CCEEEEEEeCCCCEEEEEe-----------CCC-eEEEEEcCC--Ce--EEEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271 556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs-----------~Dg-~I~VWd~~t--~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg 619 (835)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....++|.+++ + ++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCe
Confidence 3467899999999877642 223 777776432 32 233443334456889999888 4 4444554
Q ss_pred eEEEEecCCC-----C--ceeEEeec----CCCCeEEEEEcCCCCcEEEEEeC------------------CCcEEEEEC
Q 003271 620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 670 (835)
Q Consensus 620 ~I~IWDl~t~-----~--~~~~~~~~----h~~~V~sl~fsp~g~~ll~sgs~------------------Dg~I~iwDl 670 (835)
..++.|.+.. + ..+..+.. +......+.|.|+|..++..++. .|.|..++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3344455321 1 11111222 12347789999998755544421 144666666
Q ss_pred CCCeeeeEeecC---ceEEEEecCCCEEEEE
Q 003271 671 NNGSCAGVFKSG---ATQMRFQPRLGRILAA 698 (835)
Q Consensus 671 ~s~~~~~~~~~~---i~~l~fsp~~~~ll~~ 698 (835)
..++.. .+..+ ...++|++++..+++-
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEc
Confidence 654432 23322 4578999987766543
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.30 E-value=3.6 Score=46.86 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=47.0
Q ss_pred ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEE--EEcCC----------------CCEEEEEe--C
Q 003271 683 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV--CWNTS----------------GEYLASVS--D 742 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl--~fspd----------------g~~Lasgs--D 742 (835)
+.+++.+|.+.+.++...-|.|.++|+.++..++.++|-.+.=..- ..... ..+|+.-. -
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 6678899997766666556999999999998888777643321110 00111 12333333 7
Q ss_pred CeEEEEEcCCC
Q 003271 743 ELVRVWSIGSG 753 (835)
Q Consensus 743 g~I~IwDl~t~ 753 (835)
|.|.||+++++
T Consensus 390 g~lEvW~~~~g 400 (415)
T PF14655_consen 390 GILEVWSMRQG 400 (415)
T ss_pred CeEEEEecCCC
Confidence 89999999887
No 425
>PLN02153 epithiospecifier protein
Probab=95.30 E-value=1.4 Score=48.85 Aligned_cols=173 Identities=8% Similarity=-0.017 Sum_probs=80.5
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeeeeEee-------cC-ceEEEEecCCCEEEEEEcC-----------CcEEEEE
Q 003271 653 EDLLCSCDNN-----SEIRYWSINNGSCAGVFK-------SG-ATQMRFQPRLGRILAAAIE-----------NYISILD 708 (835)
Q Consensus 653 ~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~-------~~-i~~l~fsp~~~~ll~~s~d-----------g~I~IwD 708 (835)
..+++.|+.+ ..+.+||+.+.+....-. .. ....+...++..++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4466666643 357889988765432211 11 1112223344555555543 2477888
Q ss_pred CCCCeEEEEEcCC-----CCCeEEEEEcCCCCEEEEEe-C-------------CeEEEEEcCCCCCcceEEEee-cCCC-
Q 003271 709 VETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS-CTGN- 767 (835)
Q Consensus 709 l~t~~~i~~l~~h-----~~~I~sl~fspdg~~Lasgs-D-------------g~I~IwDl~t~~~~~~i~~l~-~~~~- 767 (835)
.++.+-.. +... ...-.+++. -++++++.++ + +.|.+||+.+..- ..+.... ....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCc
Confidence 87654322 1111 111112222 2455544433 2 3588888877521 1111110 0111
Q ss_pred ceEEEEEeCCCCEEEEEEcC--------------CeEEEEEcCCCcEEEeccC------CCC--eeEEEEeCCCCEEEEE
Q 003271 768 KFHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAH------DKL--VSSLAASTVNGMVASA 825 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~l~~h------~~~--V~~la~spdg~~LaSg 825 (835)
...+++ .-++..+++|+.. ..|+.||..+.....+... ... ..++.+..++++++.|
T Consensus 243 ~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g 321 (341)
T PLN02153 243 SVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321 (341)
T ss_pred ceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence 112222 2345666666641 2688899887776544311 111 1233344445677777
Q ss_pred ECCC
Q 003271 826 SHDK 829 (835)
Q Consensus 826 s~DG 829 (835)
+.++
T Consensus 322 G~~~ 325 (341)
T PLN02153 322 GKLP 325 (341)
T ss_pred CcCC
Confidence 7643
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=95.28 E-value=2 Score=47.71 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=85.4
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 003271 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~ 675 (835)
...+.++.+.+++.+++++ ..|.+..- .+.+.... .........++++.+.+++. +++.+ ..|.+++=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence 4578999999988766655 45544432 22221112 22233446789999999876 44444 457665333444433
Q ss_pred eeEee-------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 003271 676 AGVFK-------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 745 (835)
Q Consensus 676 ~~~~~-------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~I~sl~fspdg~~LasgsDg~I 745 (835)
-.... ..+..+.+.+++. +++++.+|.|.. ....++.-... ..-...+..+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 22111 2356778888655 555666675553 33333322222 222346788888888888888889988
Q ss_pred EEEEc
Q 003271 746 RVWSI 750 (835)
Q Consensus 746 ~IwDl 750 (835)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.21 E-value=0.0083 Score=70.85 Aligned_cols=171 Identities=11% Similarity=0.075 Sum_probs=97.5
Q ss_pred EecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC--CCeEE-----EEeccCCCCeEEEEECC---CCCEEEEEECC
Q 003271 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 618 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~--t~~~i-----~~l~~h~~~V~sv~fsp---dg~~Latgs~D 618 (835)
.+++-.+.|-.+.|-. +...++ -.-|.+.||+++ .|++. +........+.-|.|+| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3456677777777744 212222 223678899875 34332 22223334455566665 56677788888
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAA 698 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~ 698 (835)
++|++.+++... ...+.+|...+..++|...|-..+.+ ++|||..++++
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~-----------------------------lSpDGtv~a~a 253 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLAS-----------------------------LSPDGTVFAWA 253 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhhee-----------------------------eCCCCcEEEEe
Confidence 999998887643 35566688888888877665433433 34555555555
Q ss_pred EcCCcEEEE-----ECCCCeEEEEEcCCC-CCeEEEEEcCC---------CCEEEEEe--CCeEEEEEcCCC
Q 003271 699 AIENYISIL-----DVETQVCRLKLQGHK-NQVHSVCWNTS---------GEYLASVS--DELVRVWSIGSG 753 (835)
Q Consensus 699 s~dg~I~Iw-----Dl~t~~~i~~l~~h~-~~I~sl~fspd---------g~~Lasgs--Dg~I~IwDl~t~ 753 (835)
+.||.+.+| +....+|.+..+.|. .+-.|..|+.. -.++++++ +..+++|.....
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 555554444 334445555666666 33333333221 12455555 558888876554
No 428
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.069 Score=64.83 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=67.7
Q ss_pred CCEEEEEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-
Q 003271 692 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 768 (835)
Q Consensus 692 ~~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~- 768 (835)
+..+++++..|.|..+|+...-. ...-..-.++|++++|+.+|.+++.|- +|.|.+||+..+ +.++.+..+..+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAPV 175 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCcc
Confidence 45677788888888888876421 122222457899999999999999998 999999999988 455555555544
Q ss_pred --eEEEEEeCCCCEEEEEEcCCe
Q 003271 769 --FHSCVFHPTFPSLLVIGCYET 789 (835)
Q Consensus 769 --V~sv~fspdg~~L~sgs~dg~ 789 (835)
|..+.+..++..++++...|.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc
Confidence 444455566666777777775
No 429
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.06 E-value=4.1 Score=43.35 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=86.2
Q ss_pred CeEEEEECCCCCEEEEEE---CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCe
Q 003271 599 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 674 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs---~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD-l~s~~ 674 (835)
.+.+.++++++..++... ....++++...... ...+. ...+..-.|++++. +.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999999877665 23355555544322 22222 23678888999954 555555555666663 33332
Q ss_pred eee-Ee-----ecCceEEEEecCCCEEEEEEc---CCcEEEEECC---CC------eEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 675 CAG-VF-----KSGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 675 ~~~-~~-----~~~i~~l~fsp~~~~ll~~s~---dg~I~IwDl~---t~------~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
... .. ...|..++++|+|..++.... ++.|.+--+. .+ ..+.........+..+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 211 11 126899999999999888773 4667766543 22 111122233568899999999998
Q ss_pred EEEEe
Q 003271 737 LASVS 741 (835)
Q Consensus 737 Lasgs 741 (835)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.80 E-value=5.5 Score=48.71 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=51.5
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~ 677 (835)
-.|..|.++++|++|+..+..| |.|-.+.........+.+....|.|=.+.-+ ..++ ....
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~~~---------------- 145 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TSNS---------------- 145 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cCCC----------------
Confidence 3688899999999999988866 4554443211001122222333333333222 2122 1110
Q ss_pred EeecCceEEEEecC---CCEEEEEEcCCcEEEEECCC
Q 003271 678 VFKSGATQMRFQPR---LGRILAAAIENYISILDVET 711 (835)
Q Consensus 678 ~~~~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t 711 (835)
...+..+.|+|. +.+|++-+.|+.+++||+..
T Consensus 146 --~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 146 --SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123456677776 46777888888888888764
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.69 E-value=0.85 Score=51.34 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=60.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEE-EcCCCC----CcceE-EEeecC----CCceEEEEEeCCCCEEEEEEcC----
Q 003271 722 KNQVHSVCWNTSGEYLASVSDELVRVW-SIGSGS----KGECI-HELSCT----GNKFHSCVFHPTFPSLLVIGCY---- 787 (835)
Q Consensus 722 ~~~I~sl~fspdg~~LasgsDg~I~Iw-Dl~t~~----~~~~i-~~l~~~----~~~V~sv~fspdg~~L~sgs~d---- 787 (835)
......+++.++| +++ +....|..| |..... ..+.+ ..+... ......++|.|+|.+.++.+..
T Consensus 71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 3456788998888 444 443344444 543221 11222 223221 3447789999999866654421
Q ss_pred ---------------CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271 788 ---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 788 ---------------g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D 828 (835)
+.|.-+|..+++...+...-.....++|+++|.++++-..+
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 35666666666554433333446789999999887765433
No 432
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.57 E-value=1.2 Score=53.10 Aligned_cols=126 Identities=11% Similarity=0.119 Sum_probs=82.8
Q ss_pred ceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEEC--CCCCEEEEEECCC
Q 003271 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADR 619 (835)
Q Consensus 543 ~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fs--pdg~~Latgs~Dg 619 (835)
..+.....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+..+
T Consensus 17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 3444555555555666667666666665555556689999999877553332 356789999995 5788999999999
Q ss_pred eEEEEecC-----CCC---ceeEE--eecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003271 620 TVRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (835)
Q Consensus 620 ~I~IWDl~-----t~~---~~~~~--~~~h~-~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~ 671 (835)
.|.+|.-. ... ..++. +..|+ .+|.+..|.++|. +++++ ++.+.|+|-.
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 99998532 111 11221 23333 5799999999975 43333 4578888754
No 433
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.56 E-value=3 Score=51.36 Aligned_cols=177 Identities=11% Similarity=0.129 Sum_probs=98.4
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEeecCc-----------eEEEEe----------------cCCCEEEEEEcCCcEEEE
Q 003271 655 LLCSCDNNSEIRYWSINNGSCAGVFKSGA-----------TQMRFQ----------------PRLGRILAAAIENYISIL 707 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i-----------~~l~fs----------------p~~~~ll~~s~dg~I~Iw 707 (835)
.++.|+.++.|.-.|..+++.+..+.... ..+.+. ..++.+++++.|+.|.-+
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 34455556777777777777665554211 111111 234688999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeE-------------EEEEcC---CCCEEEEEe----------CCeEEEEEcCCCCCcceEEE
Q 003271 708 DVETQVCRLKLQGHKNQVH-------------SVCWNT---SGEYLASVS----------DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 708 Dl~t~~~i~~l~~h~~~I~-------------sl~fsp---dg~~Lasgs----------Dg~I~IwDl~t~~~~~~i~~ 761 (835)
|.++++.+..+.. .+.|. .+.-.| ++..++.++ +|.|+-||.++++ .+-.
T Consensus 276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk---l~W~ 351 (764)
T TIGR03074 276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA---LVWA 351 (764)
T ss_pred ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc---EeeE
Confidence 9999998877642 22110 111111 344444322 4789999999984 3333
Q ss_pred eec------------------CCCceEEEEEeCCCCEEEEEEc------------------CCeEEEEEcCCCcEE-Eec
Q 003271 762 LSC------------------TGNKFHSCVFHPTFPSLLVIGC------------------YETLELWNMTENKTL-TLS 804 (835)
Q Consensus 762 l~~------------------~~~~V~sv~fspdg~~L~sgs~------------------dg~I~IwDl~~~~~~-~l~ 804 (835)
+.. ..+.-...++++....++.... .+.|.-.|.++++.. .+.
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 221 0011123455555555554321 246777788888877 222
Q ss_pred --cCCC-------CeeEEEEeC-CCC---EEEEEECCCcEEEeC
Q 003271 805 --AHDK-------LVSSLAAST-VNG---MVASASHDKCVKIWK 835 (835)
Q Consensus 805 --~h~~-------~V~~la~sp-dg~---~LaSgs~DG~V~IWd 835 (835)
.|+- ...-+.+.. +|+ .|+.++.+|.+++.|
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlD 475 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLD 475 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence 2311 111122222 553 788899999988875
No 434
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.55 E-value=8.8 Score=41.97 Aligned_cols=231 Identities=14% Similarity=0.011 Sum_probs=113.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCC--CeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCc-----------
Q 003271 566 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY----------- 631 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t--~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~----------- 631 (835)
++++|+.|+.+|...+ ++.. .+..+.+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 4468999998885544 4554 3444444 566899999998877666654 334599999842221
Q ss_pred ---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEe---e----cCceEEEEecC--CCEE
Q 003271 632 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF---K----SGATQMRFQPR--LGRI 695 (835)
Q Consensus 632 ---~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~---~----~~i~~l~fsp~--~~~l 695 (835)
.......|......+.+......+++++.....|.++..... ...+.+ . .....+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 001122343333333333222223334444566666544322 112211 0 11222222322 4567
Q ss_pred EEEEcCCcEEEEECCC--CeEEE-----EEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCcceEEEeecCCC
Q 003271 696 LAAAIENYISILDVET--QVCRL-----KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGN 767 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t--~~~i~-----~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t-~~~~~~i~~l~~~~~ 767 (835)
++|+..+...++++.. ..... ..........++..-+++.+|+ +-|....+.|... .........+ ..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l~w---~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPILHW---EF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCccccceEEEc---CC
Confidence 7777653444444432 11000 0111110233344444555554 4455455555543 1111111122 33
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccC
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 806 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h 806 (835)
.+.++++. .++|++... ..|.|+++.+++.+....+
T Consensus 245 ~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 45566776 356776654 4599999999988754443
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=8 Score=41.35 Aligned_cols=226 Identities=12% Similarity=0.041 Sum_probs=123.3
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
-.++.. .|++..++..|.-+.+.|+.+. .+...+.......+.++.+ |++-+.+..|+-+.|-|+.++..++.
T Consensus 131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE
Confidence 344444 4778888886667778887643 3445555555555677775 66788888999999999998765443
Q ss_pred EeecCCC-CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec----CceEE-EEecCCCEEEEEEcCCcEEEEE
Q 003271 635 TFTGHST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----GATQM-RFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 635 ~~~~h~~-~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----~i~~l-~fsp~~~~ll~~s~dg~I~IwD 708 (835)
.-.-..+ .+.++..+++.. +++ ..+.-+.+-|....+....+.. .+.++ .+.-.+++.+++..+..+-+.|
T Consensus 207 i~~~n~g~g~~sv~vsdnr~-y~v--vy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~id 283 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRA-YLV--VYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIID 283 (370)
T ss_pred EEEEecCCceEEEEecCCee-EEE--EcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEe
Confidence 3222223 678888776632 332 2245677778777664444431 11121 3344456677777777777777
Q ss_pred CCCCeEE---EEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 709 VETQVCR---LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 709 l~t~~~i---~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
+.+.... ..+......-..+.. .+.++.........+.+....+ ......+....+.++..+-+.+.+.+..
T Consensus 284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~~q~~y~~d 358 (370)
T COG5276 284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPS---MMDKRPGRPTIGQSCDVSVDTQIIYSTD 358 (370)
T ss_pred ccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChh---hcccccCcceEeeecceEEEeeEEEEee
Confidence 7643211 111111111222222 2334443332244444444321 1111112222334444444555778888
Q ss_pred cCCeEEEEEc
Q 003271 786 CYETLELWNM 795 (835)
Q Consensus 786 ~dg~I~IwDl 795 (835)
.++.+.||+.
T Consensus 359 ~~~gl~i~~~ 368 (370)
T COG5276 359 YNGGLSIIEY 368 (370)
T ss_pred cCCCEEEEEe
Confidence 8888888875
No 436
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.45 E-value=8.5 Score=41.79 Aligned_cols=163 Identities=10% Similarity=0.091 Sum_probs=94.0
Q ss_pred cEEEEECCCCeeeeEee---------cCceEEEEecCC-----CEEEEEEc-CCcEEEEECCCCeEEEEEcCCC------
Q 003271 664 EIRYWSINNGSCAGVFK---------SGATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------ 722 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~~-----~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~------ 722 (835)
.|.+||+.+.+.++.+. +....+++.... .+++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67788888888777664 225567776633 34444444 3689999999987765554321
Q ss_pred -------------CCeEEEEEcC---CCCEEEEEeCCeEEEEEcCC-----CCCc------ceEEEeecCCCceEEEEEe
Q 003271 723 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 723 -------------~~I~sl~fsp---dg~~LasgsDg~I~IwDl~t-----~~~~------~~i~~l~~~~~~V~sv~fs 775 (835)
..+..++.+| ++++|+...=...++|.+.+ .... ..+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2355666655 66777776622233444332 1110 1222222223456778899
Q ss_pred CCCCEEEEEEcCCeEEEEEcCC-----Cc-EEEeccC-CCCeeEEEEeC--CCCEEEEEE
Q 003271 776 PTFPSLLVIGCYETLELWNMTE-----NK-TLTLSAH-DKLVSSLAAST--VNGMVASAS 826 (835)
Q Consensus 776 pdg~~L~sgs~dg~I~IwDl~~-----~~-~~~l~~h-~~~V~~la~sp--dg~~LaSgs 826 (835)
++|..+++--..+.|..|+..+ .. .+..... -..+.++.+.+ +|.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 9998777777888999999886 21 2222222 35788999998 777666554
No 437
>PRK10350 hypothetical protein; Provisional
Probab=94.44 E-value=0.15 Score=46.65 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=16.1
Q ss_pred ccccchhhhhh-hHHHHHHHHHHHHHHHHHh
Q 003271 68 NEKHSESAASY-IESQVIKAREQQQQQQQQH 97 (835)
Q Consensus 68 ~~~~s~~~~~y-iq~qq~q~~~qqqqqqq~~ 97 (835)
+..++.....| +.+++..+.+.|.+|++++
T Consensus 21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~qQq 51 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQQK 51 (145)
T ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 34455556678 6666655555444444333
No 438
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=94.41 E-value=14 Score=43.55 Aligned_cols=245 Identities=12% Similarity=0.106 Sum_probs=120.1
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCe---EEEEeccC-CCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271 564 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~---~i~~l~~h-~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~ 638 (835)
..++..++.+..+|.+....+.... .+..+ +. .....++.+..++ .+|+.|+.-|.=.++.+......+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4567788899999999888775433 12222 22 4456677776554 47888887555444444433322222222
Q ss_pred CCCCeEEEEEcCC---CC-------cEEEEEe--CCCcEEEEECCCCe---eeeEee-cCceEEEEecC----CCEEEEE
Q 003271 639 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNGS---CAGVFK-SGATQMRFQPR----LGRILAA 698 (835)
Q Consensus 639 h~~~V~sl~fsp~---g~-------~ll~sgs--~Dg~I~iwDl~s~~---~~~~~~-~~i~~l~fsp~----~~~ll~~ 698 (835)
.-++|.++++.+. +. .++++++ .+|.+++..---+- ...... .++..+-.-+. +.+++..
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 4478888888532 12 4554443 56778776432111 111111 11333222221 3444444
Q ss_pred EcCCcEEEEECC---CCeEEEEEc--C---CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec-CCCce
Q 003271 699 AIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNKF 769 (835)
Q Consensus 699 s~dg~I~IwDl~---t~~~i~~l~--~---h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~-~~~~V 769 (835)
. ...-.++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... ........ .+..|
T Consensus 378 ~-~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 378 F-PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII 451 (504)
T ss_dssp E-SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred c-CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence 4 4444555553 233332221 1 12223333333 55566666667899987665 44444433 33445
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec-----cCCCCeeEEEEeC
Q 003271 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 817 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-----~h~~~V~~la~sp 817 (835)
.+++.. +.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 452 ~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 452 VAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 444443 356888888889999998877764 211 2567888888766
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.40 E-value=2.8 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=21.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVL 581 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (835)
.-.|..|.++++|++||..|..|.+.+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 346889999999999999887664444
No 440
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=1.4 Score=44.58 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=97.8
Q ss_pred CCCEEEEEEC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceE
Q 003271 608 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQ 685 (835)
Q Consensus 608 dg~~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~ 685 (835)
++.++.+.+. ...|++||+.+++........ ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+.-.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4556665554 347999999988754332222 1222221122224455556667899999999999988877655444
Q ss_pred EEEecCCCEEEEEEcCCcEEEEECCCCeEEE----EEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceE
Q 003271 686 MRFQPRLGRILAAAIENYISILDVETQVCRL----KLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 759 (835)
Q Consensus 686 l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~----~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i 759 (835)
-....++..++.+.....++.-|.++..... ++.+ .-..+..+.|- +|.+.+-.- +..|...|..++ +.+
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG---rV~ 209 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG---RVV 209 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC---cEE
Confidence 4455666777777777777777776543322 2222 11223334442 454444333 445555555555 222
Q ss_pred EE------------eecCCCceEEEEEeCCCCEEEEEE
Q 003271 760 HE------------LSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 760 ~~------------l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
.. ...+.+..+.+++.|+...++..+
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22 123345678899999885555544
No 441
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.14 E-value=0.14 Score=39.43 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~ 588 (835)
...|.+++|+|...+||.|..||.|.||.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 442
>PHA02790 Kelch-like protein; Provisional
Probab=94.08 E-value=1.8 Score=50.71 Aligned_cols=177 Identities=7% Similarity=-0.002 Sum_probs=82.7
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEECC--CeEEEEecCCCCceeEEe
Q 003271 566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 566 dg~~Lasgs~Dg-----~I~VWd~~t~~~i~--~l~~h~~~V~sv~fspdg~~Latgs~D--g~I~IWDl~t~~~~~~~~ 636 (835)
++.++++||.++ .+..||..+.+-.. .+.........+. -++.+.+.|+.+ ..+..||..++.. ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 355667776543 56778877654332 2211111122222 367777777764 3578888765543 121
Q ss_pred ecCCCCe--EEEEEcCCCCcEEEEEeCCC---cEEEEECCCCeeeeEee--cCc-eEEEEecCCCEEEEEEcCCcEEEEE
Q 003271 637 TGHSTTV--MSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFK--SGA-TQMRFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 637 ~~h~~~V--~sl~fsp~g~~ll~sgs~Dg---~I~iwDl~s~~~~~~~~--~~i-~~l~fsp~~~~ll~~s~dg~I~IwD 708 (835)
..-..+. .+++.. ++.+.+.|+.++ .+..||.++.+....-. .+. ...+..- ++.|++.+ |.+.+||
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~-~~~IYv~G--G~~e~yd 421 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF-GRRLFLVG--RNAEFYC 421 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE-CCEEEEEC--CceEEec
Confidence 1111111 122222 245767776543 47788887765443211 111 1111122 34444443 4577888
Q ss_pred CCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003271 709 VETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 753 (835)
Q Consensus 709 l~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~ 753 (835)
.++.+-.. .+....... +++. -+|++.+.|+ + ..|.+||..++
T Consensus 422 p~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 87654332 221111112 2222 2455555555 3 24566665544
No 443
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.07 E-value=13 Score=41.85 Aligned_cols=185 Identities=6% Similarity=-0.032 Sum_probs=97.8
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-EE--
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-QM-- 686 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-~l-- 686 (835)
.++++..||.|.-.|.+++.......... ...+.+-.+..+|+ ++.++.++.++.+|.++++.+..+..... .+
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 45555788888888888776422111111 11222222333554 55777788999999998988877765541 11
Q ss_pred EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC---CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEE
Q 003271 687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~ 761 (835)
........++..+.++.++..|..+++.+....... ..+..-....++..++... ++.+.-+|..++. .+..
T Consensus 148 ~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~---~~w~ 224 (370)
T COG1520 148 PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT---LKWS 224 (370)
T ss_pred CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc---Eeee
Confidence 111223455555578999999999988877654322 1111111122333333332 3356666666652 2222
Q ss_pred ee----cCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 762 LS----CTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 762 l~----~~~~------~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.. .... .+..-...-++ .++.++.++.+...|..+++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 10 0000 00000111112 2466777777888888888877
No 444
>PLN02193 nitrile-specifier protein
Probab=94.02 E-value=16 Score=42.72 Aligned_cols=169 Identities=8% Similarity=-0.023 Sum_probs=81.5
Q ss_pred CcEEEEEeCC-------CcEEEEECCCCeeeeEee---cC----ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCe
Q 003271 653 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---SG----ATQMRFQPRLGRILAAAIE-----NYISILDVETQV 713 (835)
Q Consensus 653 ~~ll~sgs~D-------g~I~iwDl~s~~~~~~~~---~~----i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~ 713 (835)
+.+++.|+.+ ..+.+||+.+.+-...-. .+ .......-++..++.|+.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666643 347888988765442111 01 0111122233445555543 468899998764
Q ss_pred EEEEEcC----CCCCeEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCcceEEEeec------CCCceEEEEEeCC
Q 003271 714 CRLKLQG----HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHPT 777 (835)
Q Consensus 714 ~i~~l~~----h~~~I~sl~fspdg~~Lasgs-Dg-----~I~IwDl~t~~~~~~i~~l~~------~~~~V~sv~fspd 777 (835)
-...-.. ....-.+++. -++++++.|+ ++ .+.+||+.+.. ...+.. .... ..++. -+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~----W~~~~~~~~~~~~R~~-~~~~~-~~ 328 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK----WFHCSTPGDSFSIRGG-AGLEV-VQ 328 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE----EEeCCCCCCCCCCCCC-cEEEE-EC
Confidence 3321110 1111122322 2455555554 32 46788877642 111111 1111 12222 25
Q ss_pred CCEEEEEEcC----CeEEEEEcCCCcEEEeccC----CCCeeEEEEeCCCCEEEEEECC
Q 003271 778 FPSLLVIGCY----ETLELWNMTENKTLTLSAH----DKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 778 g~~L~sgs~d----g~I~IwDl~~~~~~~l~~h----~~~V~~la~spdg~~LaSgs~D 828 (835)
++.+++++.+ ..|.+||+.+.+...+... .......+..-++++++.|+.+
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 6666666655 4699999998887654322 1111111223356777777753
No 445
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.00 E-value=3.4 Score=47.70 Aligned_cols=266 Identities=14% Similarity=0.022 Sum_probs=131.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
..+|..+.++-.|. |.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+++| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34688888888884 55676665 7778888888776554433 566666555454 566777776 7887776532211
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwD 708 (835)
....-....|..+.-+..|. +..|+..|..+.--.+.+-.+...+ +.+.++..+.+ +.+-+++.++.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEec
Confidence 11111223444444444443 3345545544322222221111111 12333444444 4455666666666544
Q ss_pred CCCCeEEEEEcCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEE
Q 003271 709 VETQVCRLKLQGHKN-QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 709 l~t~~~i~~l~~h~~-~I~sl~fsp---dg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L~s 783 (835)
.+ ......+....+ .+-.++..| +.......+-|.+.+-+-.++ ..+... ...+..|+.+++..++. +..
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG---~~v~sv~q~Rg~nit~~~~d~~g~-lWl 391 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTG---ELVRSVHQLRGMNITTTLEDSRGR-LWL 391 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCC---cEEEEeeeccccccchhhhccCCc-EEE
Confidence 32 111111111111 111111111 011111111223333333333 222221 11234566666666544 777
Q ss_pred EEcCCeEEEEEcCC-CcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 784 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 784 gs~dg~I~IwDl~~-~~~~~l~--~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
++..+-+..|+..+ +..+... ...++|..|.=.|+++ |..|+.+|.+++
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77776677777666 4444222 2356788888888888 677888887653
No 446
>PLN02153 epithiospecifier protein
Probab=93.91 E-value=11 Score=41.68 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=52.1
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCeEEEEec--c-CCC---CeEEEEECCCCCEEEEEECC-----CeEEEEecC
Q 003271 566 DGKLLATGGHD-------KKAVLWCTESFTVKSTLE--E-HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE 627 (835)
Q Consensus 566 dg~~Lasgs~D-------g~I~VWd~~t~~~i~~l~--~-h~~---~V~sv~fspdg~~Latgs~D-----g~I~IWDl~ 627 (835)
++++++.|+.+ ..+.+||+.+.+-..... . ... ....+.+ ++++++.|+.+ ..|.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45566666653 357888887754332111 0 010 1222333 45677777653 357888887
Q ss_pred CCCceeEEeecC-----C-CC-eEEEEEcCCCCcEEEEEeCC-----------CcEEEEECCCCeee
Q 003271 628 NPDYSLRTFTGH-----S-TT-VMSLDFHPSKEDLLCSCDNN-----------SEIRYWSINNGSCA 676 (835)
Q Consensus 628 t~~~~~~~~~~h-----~-~~-V~sl~fsp~g~~ll~sgs~D-----------g~I~iwDl~s~~~~ 676 (835)
+... ..+... . .. -.+++.. + +.+++.|+.+ ..|.+||+.+.+-.
T Consensus 110 t~~W--~~~~~~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 110 KNEW--TFLTKLDEEGGPEARTFHSMASD-E-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEE--EEeccCCCCCCCCCceeeEEEEE-C-CEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 6543 211110 1 11 1222222 2 3466666643 25778898876543
No 447
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.90 E-value=4 Score=41.86 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=40.8
Q ss_pred CEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---C---eEEEE
Q 003271 568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R---TVRVW 624 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g---~I~IW 624 (835)
+.|+.+...++|.+|++. ......++..- +.|..+.++..|++|+|--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 355444667889999987 45566666544 789999999999999997442 2 56665
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.80 E-value=6.4 Score=43.27 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=48.0
Q ss_pred CcEEEEEeCC-----CcEEEEECCCCeee---eEe---ecCce-EEEEecCCCEEEEEEc-----CCcEEEEECCCCeEE
Q 003271 653 EDLLCSCDNN-----SEIRYWSINNGSCA---GVF---KSGAT-QMRFQPRLGRILAAAI-----ENYISILDVETQVCR 715 (835)
Q Consensus 653 ~~ll~sgs~D-----g~I~iwDl~s~~~~---~~~---~~~i~-~l~fsp~~~~ll~~s~-----dg~I~IwDl~t~~~i 715 (835)
+.+++.|+.+ ..+..||+.+.+.. ..+ ..... ..+..-++..++.|+. ...+..||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 3466666644 35777787765531 111 11111 1112223444555553 246888998865432
Q ss_pred E--EEcCCCCCeEEEEEcCCCCEEEEEe-CC----eEEEEEcCCC
Q 003271 716 L--KLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 753 (835)
Q Consensus 716 ~--~l~~h~~~I~sl~fspdg~~Lasgs-Dg----~I~IwDl~t~ 753 (835)
. .+... ......+..-++++.+.|+ ++ .+.+||..+.
T Consensus 153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 22111 1112222233556666665 43 3568888775
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=9.8 Score=45.47 Aligned_cols=214 Identities=13% Similarity=0.089 Sum_probs=99.9
Q ss_pred CCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 555 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
.+...++..+|.... ++ +.--.|+||++ +|..+..+.-....+..+.|+.+. .|++...||+|+||++.......
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcc
Confidence 344445555553211 11 23346888886 455554444334478899999775 55666799999999987433211
Q ss_pred EEe--ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec------CceEEE-EecCCCEEEEEEcC--C
Q 003271 634 RTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS------GATQMR-FQPRLGRILAAAIE--N 702 (835)
Q Consensus 634 ~~~--~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~------~i~~l~-fsp~~~~ll~~s~d--g 702 (835)
... ......|..+.|..+| +++ -..+|.|.+-+-......+..+. ...+.. +.|.....+....+ -
T Consensus 119 ~svg~e~~~~~I~ec~~f~~G--Vav-lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v 195 (829)
T KOG2280|consen 119 NSVGFESQMSDIVECRFFHNG--VAV-LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV 195 (829)
T ss_pred cccccccccCceeEEEEecCc--eEE-EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence 001 1112234433333333 222 22244444333222212222211 112222 12211111111111 0
Q ss_pred cEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-CceEEEEEeCCC
Q 003271 703 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTF 778 (835)
Q Consensus 703 ~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg 778 (835)
...++-.+.. .....+....+.+..+..||+.++|+.-. +|.|.+-++... .++.++.+.. ...-.++|.-+.
T Consensus 196 ~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 196 GLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred hhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccCCCCCCchHhceeecCC
Confidence 0111111111 11122222345677889999999999888 899988887765 4444444221 122245555443
No 450
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=93.50 E-value=0.021 Score=60.69 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=0.0
Q ss_pred HhhhcccCCCCCC
Q 003271 122 QQQRRDSTQHLND 134 (835)
Q Consensus 122 q~q~~~~~~~~~~ 134 (835)
|+++..+.+++||
T Consensus 372 Q~qQ~qQq~qmng 384 (468)
T PF11498_consen 372 QQQQQQQQHQMNG 384 (468)
T ss_dssp -------------
T ss_pred HHHhhhhhhhccc
Confidence 4444455556776
No 451
>PHA02790 Kelch-like protein; Provisional
Probab=93.45 E-value=3.1 Score=48.66 Aligned_cols=142 Identities=8% Similarity=0.004 Sum_probs=67.9
Q ss_pred CcEEEEEeCC--CcEEEEECCCCeeeeE--eecCceE-EEEecCCCEEEEEEcC---CcEEEEECCCCeEEEE--EcCCC
Q 003271 653 EDLLCSCDNN--SEIRYWSINNGSCAGV--FKSGATQ-MRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 722 (835)
Q Consensus 653 ~~ll~sgs~D--g~I~iwDl~s~~~~~~--~~~~i~~-l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~--l~~h~ 722 (835)
+.+++.|+.+ ..+..||..+++.... +...... ....-++..+++|+.+ ..+..||.++.+-... +....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4566677653 4678888876544322 2211111 2223344555555544 3477888876543321 11011
Q ss_pred CCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCC
Q 003271 723 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 797 (835)
Q Consensus 723 ~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~ 797 (835)
.. .+++ .-++++.+.| |.+.+||..+.. ...+..+........ ++ .-+++..++||.+ ..|.+||..+
T Consensus 399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cc-ceEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 11 1222 2345555555 456788887652 122222221122222 22 2355666666643 3677888777
Q ss_pred CcEE
Q 003271 798 NKTL 801 (835)
Q Consensus 798 ~~~~ 801 (835)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6654
No 452
>PLN02193 nitrile-specifier protein
Probab=93.32 E-value=10 Score=44.31 Aligned_cols=190 Identities=6% Similarity=-0.024 Sum_probs=89.7
Q ss_pred CCCEEEEEECC-------CeEEEEecCCCCceeEEeec-CCC--Ce-EEEEEcCCCCcEEEEEeCC-----CcEEEEECC
Q 003271 608 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--TV-MSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 671 (835)
Q Consensus 608 dg~~Latgs~D-------g~I~IWDl~t~~~~~~~~~~-h~~--~V-~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~ 671 (835)
++.+++.|+.+ ..+.+||+.+.........+ ... .. .+++.. +..+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34566666643 24778888765432111111 111 01 112222 34566677654 468889998
Q ss_pred CCeeeeEeec-----C-ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEEEc-----CCCCCeEEEEEcCCCC
Q 003271 672 NGSCAGVFKS-----G-ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGE 735 (835)
Q Consensus 672 s~~~~~~~~~-----~-i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~l~-----~h~~~I~sl~fspdg~ 735 (835)
+.+....... + ....+..-++..++.|+.+ ..+..||+.+.+-...-. ..... .+++. -+++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~gk 330 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQGK 330 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECCc
Confidence 7665432211 1 1111222234455555543 346788887654322110 00111 12222 2456
Q ss_pred EEEEEe-C----CeEEEEEcCCCCCcceEEEee-cC-CCceEEEEEeCCCCEEEEEEcC--------------CeEEEEE
Q 003271 736 YLASVS-D----ELVRVWSIGSGSKGECIHELS-CT-GNKFHSCVFHPTFPSLLVIGCY--------------ETLELWN 794 (835)
Q Consensus 736 ~Lasgs-D----g~I~IwDl~t~~~~~~i~~l~-~~-~~~V~sv~fspdg~~L~sgs~d--------------g~I~IwD 794 (835)
+++.++ + ..|.+||+.+..- ..+.... .. .....+++ .-+++.+++|+.. ..+.+||
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 666555 4 4689999887521 1111110 01 11112222 2345566666642 2588999
Q ss_pred cCCCcEEEe
Q 003271 795 MTENKTLTL 803 (835)
Q Consensus 795 l~~~~~~~l 803 (835)
+.+.....+
T Consensus 409 ~~t~~W~~~ 417 (470)
T PLN02193 409 TETLQWERL 417 (470)
T ss_pred cCcCEEEEc
Confidence 988876644
No 453
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.21 E-value=0.02 Score=67.82 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=73.7
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEE-----------ECCCCCEEEEEECCCeEEEEec
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~-----------fspdg~~Latgs~Dg~I~IWDl 626 (835)
|..|-|.++.-++.++-.++.|++.+.++... ..+.+|...+++++ .+|||+.|++++.||.++.|-+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44444555677888888889998877654322 34455776666554 5899999999999999999876
Q ss_pred CCCC----ceeEEeecCC-CCeEEEEEcCCC---------CcEEEEEeCCCcEEEEECCCCeee
Q 003271 627 ENPD----YSLRTFTGHS-TTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINNGSCA 676 (835)
Q Consensus 627 ~t~~----~~~~~~~~h~-~~V~sl~fsp~g---------~~ll~sgs~Dg~I~iwDl~s~~~~ 676 (835)
--.. .+++..+.|+ .+-.|.-|+... ..+|-+...+..+++|.....+|.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 4211 1234455555 232333233221 123334455678999988877776
No 454
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.19 E-value=29 Score=43.20 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCCCCEEEEEEe---C----CCCEEEEEeCCCeEEEEEcC------C---------CeEEEEecc---CCCCeEEEEECC
Q 003271 553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLEE---HTQWITDVRFSP 607 (835)
Q Consensus 553 gH~~~V~sl~fS---p----dg~~Lasgs~Dg~I~VWd~~------t---------~~~i~~l~~---h~~~V~sv~fsp 607 (835)
.-..+|..|+|. . ..++|++= ....+.|+... . ..++..+.. ...+..+|+|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788889888 2 22355543 45667777611 1 123334432 233677899998
Q ss_pred -CCCEEEEEECCCeEEEEecCCCC----ceeEEeecCC----------CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 003271 608 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (835)
Q Consensus 608 -dg~~Latgs~Dg~I~IWDl~t~~----~~~~~~~~h~----------~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s 672 (835)
+...||+....|...||++.... ..+.....+. +....|.|.++.+.+|+ ++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-CN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-Ec-CCceEEEECCC
Confidence 45689999999999999992111 1111111111 22347788877665554 43 56899999988
Q ss_pred Ceeee-Eee----cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271 673 GSCAG-VFK----SGATQMRFQPRLGRILAAAIENYISILDVET 711 (835)
Q Consensus 673 ~~~~~-~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t 711 (835)
..... ... ..+..+.-++.....+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76533 221 2366677666633333333447788888876
No 455
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.74 Score=56.62 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=84.3
Q ss_pred ceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEE-----EEcC------CCCCeEEEEEcCCCC--EEEEEeCCeEEE
Q 003271 683 ATQMRFQPRLGRILAAAI--ENYISILDVETQVCRL-----KLQG------HKNQVHSVCWNTSGE--YLASVSDELVRV 747 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~-----~l~~------h~~~I~sl~fspdg~--~LasgsDg~I~I 747 (835)
+..+...+|....++... +-.|+.||+++..... -+.. ...-..++.|+|.-. .+++-.|+.|+|
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 334444555444444333 3378888987532211 1111 223455778887543 333334899998
Q ss_pred EEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec---c-CCCCeeEEEEeCCCCEEE
Q 003271 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS---A-HDKLVSSLAASTVNGMVA 823 (835)
Q Consensus 748 wDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~---~-h~~~V~~la~spdg~~La 823 (835)
..+.-.. ..+.. .......++++|+|.|+.+++|-..|++.-|...-.....+. . ....|.+|+|-....++|
T Consensus 183 ~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 183 KSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 8775431 11111 223567899999999999999999999988875443222221 1 147899999988777666
Q ss_pred EE
Q 003271 824 SA 825 (835)
Q Consensus 824 Sg 825 (835)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 54
No 456
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.93 E-value=2.7 Score=50.13 Aligned_cols=109 Identities=12% Similarity=0.190 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEEcC---
Q 003271 723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMT--- 796 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f--spdg~~L~sgs~dg~I~IwDl~--- 796 (835)
..+.-+.-+.-++..++.+ ...+.|||.+.+.. +.-..+ ...+.|..+.| .|++..+++.|....|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l-E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL-EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEE-EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3444455555555555554 44999999988731 111122 45678899988 5789999999999999998531
Q ss_pred --CC----c---EEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 797 --EN----K---TLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 797 --~~----~---~~~l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.. . .+.+..|+ .+|.+..|.++|.+++.++ +.+.|+|
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 1 12344555 6899999999997666554 3566654
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.90 E-value=20 Score=40.73 Aligned_cols=109 Identities=12% Similarity=0.008 Sum_probs=64.2
Q ss_pred cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe-----EEEEEcC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271 681 SGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 753 (835)
Q Consensus 681 ~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~-----~i~~l~~--h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~ 753 (835)
..+..+.+.+++..++++ ..|.+..- ...+. ....... ....+.++.|.+++..+++|..|.+.+.. ..+
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G 357 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGG 357 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCC
Confidence 346778888887666554 55555443 22232 1222211 22358899999999988888888766653 333
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
+..............++.+.|.++++ .++.+.+|.|.-|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 22222221223345678888877655 6777777776654
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.86 E-value=7.3 Score=42.82 Aligned_cols=108 Identities=8% Similarity=0.086 Sum_probs=53.4
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCeE---EEEeccCCCCe--EEEEECCCCCEEEEEEC-----CCeEEEEecCCCC
Q 003271 566 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 630 (835)
Q Consensus 566 dg~~Lasgs~D-----g~I~VWd~~t~~~---i~~l~~h~~~V--~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~~ 630 (835)
++.+++.|+.+ ..+..||+.+.+- ...+..-.... .+++. -++++++.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777754 3567777766543 12221111111 12222 25566677664 2468888988765
Q ss_pred ceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEECCCCeee
Q 003271 631 YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA 676 (835)
Q Consensus 631 ~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg----~I~iwDl~s~~~~ 676 (835)
..... +... ......+..-+ +.+++.|+.++ .+.+||+.+.+..
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence 42211 1111 11111211222 45777776553 3568898876543
No 459
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.62 E-value=14 Score=41.79 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=10.1
Q ss_pred CcEEEEECCCCeee
Q 003271 663 SEIRYWSINNGSCA 676 (835)
Q Consensus 663 g~I~iwDl~s~~~~ 676 (835)
..|.+||..+.+..
T Consensus 189 ~~v~~YD~~t~~W~ 202 (376)
T PRK14131 189 KEVLSYDPSTNQWK 202 (376)
T ss_pred ceEEEEECCCCeee
Confidence 35888998876654
No 460
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.43 E-value=24 Score=40.35 Aligned_cols=147 Identities=12% Similarity=0.110 Sum_probs=79.7
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC----CC-CEEEEEeCCCeE
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP----DG-KLLATGGHDKKA 579 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp----dg-~~Lasgs~Dg~I 579 (835)
....+.+||.+|.+++|.......... .+-.-..-..+|..+..-. .. ..||+ -.-.++
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl 99 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKL 99 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEE
Confidence 346788899999999996633321100 0111112234566665432 22 23443 556788
Q ss_pred EEEEcCC--Ce-------EEEEeccCCC--CeEEEEECC----C-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe
Q 003271 580 VLWCTES--FT-------VKSTLEEHTQ--WITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (835)
Q Consensus 580 ~VWd~~t--~~-------~i~~l~~h~~--~V~sv~fsp----d-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V 643 (835)
.||.+.. +. .+..+..|.- ....+++-| . ..+|++-+.||.+.+|+-+.-. ...+....--.
T Consensus 100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llP 177 (418)
T PF14727_consen 100 SVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLP 177 (418)
T ss_pred EEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCC
Confidence 8887621 11 1122223322 223333322 2 3578889999999999977532 22222223333
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 003271 644 MSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (835)
Q Consensus 644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl 670 (835)
..++|.+..+ .|++++.+..|..|..
T Consensus 178 gPl~Y~~~tD-sfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 178 GPLCYCPRTD-SFVTASSSWTLECYKY 203 (418)
T ss_pred cCeEEeecCC-EEEEecCceeEEEecH
Confidence 4567777655 5557777778877764
No 461
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.23 E-value=0.42 Score=36.75 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 462
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=92.10 E-value=32 Score=41.02 Aligned_cols=198 Identities=13% Similarity=0.055 Sum_probs=110.9
Q ss_pred CeEEEEECCCCCEEEEEEC-----CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEE
Q 003271 599 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS 669 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg----~I~iwD 669 (835)
.+-.++.+||.+++|-+-. .-++++-|+.++......+. +....++|.++++.++++-..++ .|....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 4556788999888876533 34789999998875333333 34667899999998888876655 233333
Q ss_pred CCC----CeeeeEeecC--ceEEEEecCCCEEEEEEcC---CcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEE
Q 003271 670 INN----GSCAGVFKSG--ATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA 738 (835)
Q Consensus 670 l~s----~~~~~~~~~~--i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~La 738 (835)
+.+ .+.+..-+.. ...+.-+.+..+|+....+ +.+++.+...... ........+--..+.- .+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh--~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEH--GGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeee--cCcEEE
Confidence 333 1222222222 2233334455666665543 5677887775432 2222111111122221 233333
Q ss_pred -EEe-CC-eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEE
Q 003271 739 -SVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 801 (835)
Q Consensus 739 -sgs-Dg-~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~ 801 (835)
-.. +| ..+|+.............+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 333 55 566665444111233445556776666667777777788777665 8889998776654
No 463
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.62 E-value=27 Score=39.26 Aligned_cols=180 Identities=12% Similarity=0.173 Sum_probs=102.3
Q ss_pred CcEEEEEeCCCcEEEEECCCCeeeeEee-cCceEEE----EecCCCE--EEEEEc-C---CcEEEEECC--CCeEEEEEc
Q 003271 653 EDLLCSCDNNSEIRYWSINNGSCAGVFK-SGATQMR----FQPRLGR--ILAAAI-E---NYISILDVE--TQVCRLKLQ 719 (835)
Q Consensus 653 ~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~~i~~l~----fsp~~~~--ll~~s~-d---g~I~IwDl~--t~~~i~~l~ 719 (835)
+.+++....++-+.+||+. |+.+..+. +....+. |.-.+.. |++++. + ..|++|.+. ++. +..+.
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~ 145 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVT 145 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-C
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcC
Confidence 3477778888999999998 45555554 2233222 2223333 444443 2 468888665 343 33322
Q ss_pred C-------CCCCeEEEEEc--C-CCCEEEE-Ee-CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 720 G-------HKNQVHSVCWN--T-SGEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 720 ~-------h~~~I~sl~fs--p-dg~~Las-gs-Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
. ....++.+|+. + +|.+.+. .. +|.+..|.+..... .+.++++.. ...+-.|+......+|++
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEE
Confidence 1 12346777763 3 4655444 44 88888888863222 245666665 457999999999999999
Q ss_pred EEcCCeEEEEEcCCC-----cEEEe-c--cCCCCeeEEEEeC--CCC-EEEEE-ECCCcEEEeC
Q 003271 784 IGCYETLELWNMTEN-----KTLTL-S--AHDKLVSSLAAST--VNG-MVASA-SHDKCVKIWK 835 (835)
Q Consensus 784 gs~dg~I~IwDl~~~-----~~~~l-~--~h~~~V~~la~sp--dg~-~LaSg-s~DG~V~IWd 835 (835)
+-.+--|+-|+.+.. ..+.. . .....|-.|++-. +++ ||+.+ -.+++..|||
T Consensus 225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 225 GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 999999999988632 22222 1 2345678888753 333 44444 4566787775
No 464
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.48 E-value=26 Score=38.80 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=23.6
Q ss_pred eEEEEEcCCCcEEEeccCCCCe-eEEEEeCCCCEEEEEECCC
Q 003271 789 TLELWNMTENKTLTLSAHDKLV-SSLAASTVNGMVASASHDK 829 (835)
Q Consensus 789 ~I~IwDl~~~~~~~l~~h~~~V-~~la~spdg~~LaSgs~DG 829 (835)
.+.+||.++.+...+....... ...+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 5778998877654333222211 2223445788888888653
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.41 E-value=0.024 Score=63.32 Aligned_cols=139 Identities=16% Similarity=0.292 Sum_probs=97.4
Q ss_pred eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEE
Q 003271 684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~ 761 (835)
....|.+.+..+++++.+..+..||-.... ..... .......++|+.++..++... .+.+++||+.+... ..
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----qq 111 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----QQ 111 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----HH
Confidence 345677777778888888888888865432 22222 344556788988887766655 88999999987521 11
Q ss_pred eecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-CCCCeeEEEEeCCCCEEEEEECCC
Q 003271 762 LSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 762 l~~~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-h~~~V~~la~spdg~~LaSgs~DG 829 (835)
+... ...-.-..|++.++.++.+...+.+.||+..+.+.....+ |...+++++|.+.+ +++.++.|.
T Consensus 112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 1111 1112226899999999999999999999998887775555 99999999999876 455555454
No 466
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.38 E-value=36 Score=40.95 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=65.2
Q ss_pred eecCceEEEEecCCCEEEEEEcCCcEEEEECCCC--eEEEEEcC-CCCCeEEEEEcC------CCCEEEEEe--CC---e
Q 003271 679 FKSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQG-HKNQVHSVCWNT------SGEYLASVS--DE---L 744 (835)
Q Consensus 679 ~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~--~~i~~l~~-h~~~I~sl~fsp------dg~~Lasgs--Dg---~ 744 (835)
++..+..+.|..++..+++...+|.|.+||...+ +.+..+.. +...+..-+|-+ ...++++.+ ++ .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 4566888899999999999999999999999322 11112211 222121112222 223444333 22 7
Q ss_pred EEEEEcCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 745 VRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 745 I~IwDl~t~~~~~~i~~l~---~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
++++.+.... ..+.++. .+......+.|+-....|+.- .+++|.+|++..-+..
T Consensus 208 ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 208 YKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred EEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 8888882211 2223332 222333333343333334444 6779999999776654
No 467
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=91.36 E-value=50 Score=41.83 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=77.7
Q ss_pred CEEEEEEc---------CCcEEEEECCC-----Ce-----EEEEE--cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271 693 GRILAAAI---------ENYISILDVET-----QV-----CRLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 751 (835)
Q Consensus 693 ~~ll~~s~---------dg~I~IwDl~t-----~~-----~i~~l--~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~ 751 (835)
.++++|+. .|.++|||+-. ++ .++.+ +.-++.|..+|= -+| +|+++..-.|.||++.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEEEEec
Confidence 46666653 37899998742 21 11111 224567776653 344 4555666789999995
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-cEEEec---cCCCCeeEEEEeCCCC--EEEEE
Q 003271 752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-KTLTLS---AHDKLVSSLAASTVNG--MVASA 825 (835)
Q Consensus 752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~-~~~~l~---~h~~~V~~la~spdg~--~LaSg 825 (835)
.......+.-+ .-.+......--.++|++|.--..|.+.-..+. ..+.+. ...-.+.++.|--||. .++++
T Consensus 1125 r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs 1201 (1366)
T KOG1896|consen 1125 RDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS 1201 (1366)
T ss_pred cCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE
Confidence 44221222211 222333333334556777777777776655432 222222 2234577888877776 67888
Q ss_pred ECCCcEEEe
Q 003271 826 SHDKCVKIW 834 (835)
Q Consensus 826 s~DG~V~IW 834 (835)
..|++|++|
T Consensus 1202 Da~rNi~vy 1210 (1366)
T KOG1896|consen 1202 DADRNIHVY 1210 (1366)
T ss_pred cCCCcEEEE
Confidence 899999886
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.20 E-value=0.056 Score=60.49 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=104.4
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe
Q 003271 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (835)
Q Consensus 600 V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~ 679 (835)
.....|.+.+.-++.++.+..|..||-..... .-...++....++|+.+++.+++.+-..+.+++||+.+...-..-
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhccee---cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 34556778777788888898999998664322 122234556778899888888888888999999999864322111
Q ss_pred ecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003271 680 KSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 748 (835)
Q Consensus 680 ~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~Iw 748 (835)
.++ -.-+.|++....++.+...+.+.|+...+.+.+...-.|...+++++|.+.+..+..+.|..+.+-
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 111 222668888888888989999999999887766666558999999999988776655546544433
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.13 E-value=6.9 Score=40.17 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=78.2
Q ss_pred CEEEEEEcCCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CC---eEEEE-EcCCC---CCcceE
Q 003271 693 GRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DE---LVRVW-SIGSG---SKGECI 759 (835)
Q Consensus 693 ~~ll~~s~dg~I~IwDl~t--~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg---~I~Iw-Dl~t~---~~~~~i 759 (835)
+.++++.....|.+|++.. ......|. .-+.|..+.++..|+||++-- .. .+|+| +.+.. ....++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 6677778888999999983 35556665 447899999999999999976 22 55665 22211 110111
Q ss_pred ---------------------EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE-------EEe----ccC-
Q 003271 760 ---------------------HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-------LTL----SAH- 806 (835)
Q Consensus 760 ---------------------~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~-------~~l----~~h- 806 (835)
.++. ....+.+++..|-...|++|+.+ ++.||.+..... +.+ ..|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1111 12355666666654446666554 777877643332 111 112
Q ss_pred CC-CeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 807 DK-LVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 807 ~~-~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.+ .+..+++. +.++|..++ -.++|.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s~-~ev~Vl 211 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMSD-LEVLVL 211 (215)
T ss_pred cCceEEEEEEE--eeEEEEecC-CEEEEE
Confidence 11 24555654 567776654 455554
No 470
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.94 E-value=29 Score=38.39 Aligned_cols=64 Identities=6% Similarity=-0.021 Sum_probs=31.3
Q ss_pred CCCEEEEEeC-CCeEEEEEcCC----CeEEEEeccC-CCCeEEEEECCCCCEEEEEECC-----------CeEEEEecCC
Q 003271 566 DGKLLATGGH-DKKAVLWCTES----FTVKSTLEEH-TQWITDVRFSPSLSRLATSSAD-----------RTVRVWDTEN 628 (835)
Q Consensus 566 dg~~Lasgs~-Dg~I~VWd~~t----~~~i~~l~~h-~~~V~sv~fspdg~~Latgs~D-----------g~I~IWDl~t 628 (835)
++++.++|+. ...+.++|++. ...+..+... ......+. -++++.+.|+.+ ..+..||..+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 4555555554 24566777632 2222222211 11111222 256777777753 2477788876
Q ss_pred CCc
Q 003271 629 PDY 631 (835)
Q Consensus 629 ~~~ 631 (835)
...
T Consensus 95 ~~W 97 (346)
T TIGR03547 95 NSW 97 (346)
T ss_pred CEE
Confidence 553
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.86 E-value=6 Score=37.50 Aligned_cols=107 Identities=8% Similarity=0.090 Sum_probs=61.9
Q ss_pred cCCCEEEEEEcCCcEEEEECCCC--------eEEEEEcCCCCCeEEEEEcC-----CCCEEEEEeCCeEEEEEcCCCCCc
Q 003271 690 PRLGRILAAAIENYISILDVETQ--------VCRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGSGSKG 756 (835)
Q Consensus 690 p~~~~ll~~s~dg~I~IwDl~t~--------~~i~~l~~h~~~I~sl~fsp-----dg~~LasgsDg~I~IwDl~t~~~~ 756 (835)
.....|++++..++|.|++.... ..+..+. -...|++|+-.+ +...|+.|+...|..||+.....
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d- 85 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD- 85 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-
Confidence 33344555555566666654422 1122222 345666665432 45789999999999999988632
Q ss_pred ceEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 757 ECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 757 ~~i~~l~~~~~~V~sv~fs---pdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
+. ++.-...++++.+- ....-++..+.+..|.-||....+..
T Consensus 86 --~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 86 --LF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred --hh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 21 12223556666553 22334666666778888887766655
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=3.4 Score=46.39 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=68.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC--
Q 003271 721 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT-- 796 (835)
Q Consensus 721 h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~-- 796 (835)
..++|.++.|++|.+.|++-- |++|.+++...... ....++.......|..++|+.+ .-++.....| |.+|-+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 456999999999999999987 99999999843321 1223333444556888999877 4466666554 5555443
Q ss_pred CCcEEEeccCCCCeeEEEEeCCCCEEEEE
Q 003271 797 ENKTLTLSAHDKLVSSLAASTVNGMVASA 825 (835)
Q Consensus 797 ~~~~~~l~~h~~~V~~la~spdg~~LaSg 825 (835)
...+.....|...|.=..|.++.+.+.-+
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeee
Confidence 33333555677778778888877744433
No 473
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=6.2 Score=50.14 Aligned_cols=227 Identities=13% Similarity=0.100 Sum_probs=109.8
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC-CeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~-~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
.....++|+|.-.++|.++.+|.|++|-..-.+.+.....-.. .+..+.|-.......+...+..+.+|.......
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--- 112 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG--- 112 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence 3456789999999999999999999997654443322221111 122222222222333334455566666553221
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEE-EEecCCCEEEEEEcCCcEEEEEC
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQM-RFQPRLGRILAAAIENYISILDV 709 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l-~fsp~~~~ll~~s~dg~I~IwDl 709 (835)
..+...+++....+- -..+.+ ..+.+++||..-...... +....... ...+..-.+..--.+-.-.++-+
T Consensus 113 --~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 113 --VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred --eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 112233333332222 112344 778888888753221110 00100000 00000000000000101111111
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003271 710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 789 (835)
Q Consensus 710 ~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~ 789 (835)
.... ..+.-+..++.+..+......+..+..+.+.+|+.... .....+.... ..+.+++..++++-.||.
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs 257 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPNG-----QLESRDGSHFVSYHTDGS 257 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhccccc-----ccCccCCceEEEEEecCC
Confidence 1001 12223555666666666666666666777777765543 1222222111 122788899999999999
Q ss_pred EEEEEcCCCcE
Q 003271 790 LELWNMTENKT 800 (835)
Q Consensus 790 I~IwDl~~~~~ 800 (835)
+.+||...++.
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999988754
No 474
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.74 E-value=39 Score=39.76 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=108.2
Q ss_pred CCCCCEEEEEECCCeEEEEecCCCCc-eeEEeecC-CCCeEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCeeeeEee-
Q 003271 606 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK- 680 (835)
Q Consensus 606 spdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h-~~~V~sl~fsp~g~~ll~sgs~--Dg~I~iwDl~s~~~~~~~~- 680 (835)
..++..++.+..+|.+....+..... ......+. .....++++..++..+++.|+. |+.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34577889999999999888775431 12222222 4566788887776445556654 4555566644445555554
Q ss_pred -cCceEEEEecC----CC------EEEEEEc---CCcEEEEECCCCeE--EEEEcCC--CCCeEEEEEcC-CCCEEEEEe
Q 003271 681 -SGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGH--KNQVHSVCWNT-SGEYLASVS 741 (835)
Q Consensus 681 -~~i~~l~fsp~----~~------~ll~~s~---dg~I~IwDl~t~~~--i~~l~~h--~~~I~sl~fsp-dg~~Lasgs 741 (835)
+++..+++... .. .+++++. +|.++++.-.-+-. ....... ...++.+.... ++.||+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 56777776532 12 6677663 57788774322111 1111112 22333333222 256777777
Q ss_pred CCeEEEEEcCCCCCcceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-e-ccCCCCeeEEE
Q 003271 742 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSLA 814 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l-----~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l-~~h~~~V~~la 814 (835)
...-+|+.+........+..+ ......+.+..+. +..++=.... .|++.+....+... + ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 666667777421111222221 1112222222222 3334433333 58888887777663 2 23445566655
Q ss_pred EeCCCCEEEEEECCCcEEEe
Q 003271 815 ASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 815 ~spdg~~LaSgs~DG~V~IW 834 (835)
+. +.+++.+..++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 54 3455555556666554
No 475
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.71 E-value=5.8 Score=47.84 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=67.4
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCC-----------C------CcceEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEE
Q 003271 732 TSGEYLASVS-DELVRVWSIGSG-----------S------KGECIHELSCTGNKFHSCVFH--PTFPSLLVIGCYETLE 791 (835)
Q Consensus 732 pdg~~Lasgs-Dg~I~IwDl~t~-----------~------~~~~i~~l~~~~~~V~sv~fs--pdg~~L~sgs~dg~I~ 791 (835)
-+..+|++|. ||.|.+|.+.+- . ..++...+. ....++.++++ ...++||+++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence 3456666666 999999976321 0 011222222 34578999998 7788888888777776
Q ss_pred EEEcCC--CcEE--EeccCCCCeeEEEEeCCC---C---EEEEEECCCcEEEeC
Q 003271 792 LWNMTE--NKTL--TLSAHDKLVSSLAASTVN---G---MVASASHDKCVKIWK 835 (835)
Q Consensus 792 IwDl~~--~~~~--~l~~h~~~V~~la~spdg---~---~LaSgs~DG~V~IWd 835 (835)
||-... .+.. ....|...|-+|+|-++. . +|++++-.|.|.+|+
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 665433 2222 223467789999998754 2 788889999988874
No 476
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.68 E-value=1.5 Score=45.58 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=52.3
Q ss_pred eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE-------c-------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 003271 684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWS 749 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l-------~-------~h~~~I~sl~fspdg~~LasgsDg~I~IwD 749 (835)
..+.+...+.++++.+.+|.+++||+.+.+.+..- . .....|..+.++.+|.-|++-++|..+.|+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 34445566778888888888888888877665432 1 245678888999999999988889999998
Q ss_pred cCCC
Q 003271 750 IGSG 753 (835)
Q Consensus 750 l~t~ 753 (835)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7654
No 477
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=17 Score=37.12 Aligned_cols=169 Identities=9% Similarity=0.062 Sum_probs=87.3
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCC
Q 003271 566 DGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (835)
Q Consensus 566 dg~~Lasgs~--Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~ 642 (835)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++ +-.-.+|...+||.++-+. +..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-LGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-hcccc-cCCc
Confidence 4566666553 3479999999998876543322111111111112222 2233578888999887553 32222 2233
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----C---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----G---ATQMRFQPRLGRILAAAIENYISILDVETQVC 714 (835)
Q Consensus 643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~ 714 (835)
=+.++. +++.++ .++...++++-|.++......+.. + ...+.|. +|..++-.-.+..|...|..+++.
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 455543 344455 444455677777765544333221 1 2222222 222222233445666667777766
Q ss_pred EEEEc------------CCCCCeEEEEEcCCC-CEEEEE
Q 003271 715 RLKLQ------------GHKNQVHSVCWNTSG-EYLASV 740 (835)
Q Consensus 715 i~~l~------------~h~~~I~sl~fspdg-~~Lasg 740 (835)
+..+. .|..-...+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65443 244456788888887 444444
No 478
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.66 E-value=20 Score=40.45 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=20.9
Q ss_pred EEEEEcCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 003271 790 LELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 790 I~IwDl~~~~~~~l~~h~-~~V~~la~spdg~~LaSgs~D 828 (835)
+.+||.++.+...+..-. ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 568898877654322111 111222344467788888753
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.64 E-value=38 Score=39.18 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=39.2
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE--EEEec-----cCCCCeEEEEECCCC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL 609 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--i~~l~-----~h~~~V~sv~fspdg 609 (835)
..-..-+.|+|.|||++|++--..|.|++++..++.. +..+. ...+....|+|+|+-
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3445578999999998777765569999998655432 22221 125678999999874
No 480
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.32 E-value=33 Score=37.92 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=60.8
Q ss_pred ceEEEEecCCCEEEEEEcC------CcEEEEECCCCeEEEEEc---------------CCCCCeEEEEEcCCCCEEEEEe
Q 003271 683 ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQ---------------GHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~---------------~h~~~I~sl~fspdg~~Lasgs 741 (835)
...+++.+++.++++.-.+ ..|+.++.. ++.+..+. .....+.+|+++|+|..|+++.
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 4467786666655555556 678888876 54443331 1345688999999999666553
Q ss_pred ------CC--e-------EEEEEcCCCC----CcceEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003271 742 ------DE--L-------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 742 ------Dg--~-------I~IwDl~t~~----~~~~i~~l~~-----~~~~V~sv~fspdg~~L~s 783 (835)
|+ . ++|+.+.... .......+.. ....+..+.+.+++++|+.
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 22 2 5555554322 1122333332 4677899999999986654
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.30 E-value=6.5 Score=44.96 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=57.6
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 003271 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~ 678 (835)
.|..|..++.|..++.++.+|.+.++=...-. .-..+......|.|=.|.-+ ..++ +.+. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s~~eDgk~~v~CRt~~i~-~~~f-tss~--~-------------- 165 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNSEFEDGKSTVNCRTTPVA-ERFF-TSST--S-------------- 165 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccceecCCCceEEEEeeccc-ceee-ccCC--c--------------
Confidence 47778889999999999999965554322111 12233333334555444332 2222 1111 1
Q ss_pred eecCceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271 679 FKSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKL 718 (835)
Q Consensus 679 ~~~~i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l 718 (835)
-.+..++|+|+. ..++.-+.|+.|++||+...+.++..
T Consensus 166 --ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 166 --LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred --eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 123456677764 67888888889999988876665443
No 482
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.98 E-value=19 Score=41.23 Aligned_cols=30 Identities=13% Similarity=0.373 Sum_probs=21.6
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
.|..++..+..+.+++.+.++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 477777777778888888888888888864
No 483
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.90 E-value=32 Score=37.24 Aligned_cols=215 Identities=12% Similarity=0.066 Sum_probs=120.3
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEecC------CCCceeEEeec-----CCCCeEEEEEcCCCC-----------cEE
Q 003271 599 WITDVRFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTG-----HSTTVMSLDFHPSKE-----------DLL 656 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~------t~~~~~~~~~~-----h~~~V~sl~fsp~g~-----------~ll 656 (835)
.-+.|+|+|.+.+.++....+...+||.. .....+..+.. .....+.+.|+.... -.+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999998888888788999999987 11111222221 224567777764322 235
Q ss_pred EEEeCCCcEEEEECCCCee-----eeEee----cC-ceEEEEec--CCCEEEEEEc-CCcEEEEECCCCeEEE--EEcCC
Q 003271 657 CSCDNNSEIRYWSINNGSC-----AGVFK----SG-ATQMRFQP--RLGRILAAAI-ENYISILDVETQVCRL--KLQGH 721 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s~~~-----~~~~~----~~-i~~l~fsp--~~~~ll~~s~-dg~I~IwDl~t~~~i~--~l~~h 721 (835)
+.+++||+|.-|...-+.. ...+. +. ...+++.. .+++|+++.. .++|.|||-.-..... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6788999999998643222 11222 11 33444443 3566666554 6889999865332211 11100
Q ss_pred C----------------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--cCCCceEEEEEeC------
Q 003271 722 K----------------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHP------ 776 (835)
Q Consensus 722 ~----------------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~~~~~V~sv~fsp------ 776 (835)
. -.|+...-.++.+.=+.+. -|.|-+||+.- ..++.+. +.-...+.++..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0 0011111122222222222 46899999765 3555442 2234456666654
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC------CCeeEEEEeC
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAAST 817 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~------~~V~~la~sp 817 (835)
.+..|+---.||+|..||..+++.+ .+.... ..++.|+|..
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3555555556999999999988866 333322 3467888865
No 484
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.86 E-value=3.5 Score=46.88 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=88.0
Q ss_pred CCCEEEE-EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC--------CCEEEEEeCCeEEEEEcCCCCCcceEEE
Q 003271 691 RLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS--------GEYLASVSDELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 691 ~~~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd--------g~~LasgsDg~I~IwDl~t~~~~~~i~~ 761 (835)
+...|+. +.....++-.|++.|+.+....-|... -+.|.|+ ...|+..++..|.-.|.+-......+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3344433 334567888899999999888866654 4667764 3457777777777777665432112222
Q ss_pred ee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271 762 LS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 762 l~--~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~D 828 (835)
.. .......+..- ....+|++++..|.|++||--..... .+.+....|..|..+.+|++|++.|..
T Consensus 556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 11 11222333333 34458999999999999996554433 667778899999999999988777654
No 485
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.60 E-value=48 Score=38.77 Aligned_cols=141 Identities=12% Similarity=0.052 Sum_probs=72.1
Q ss_pred CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC---CCeEEEEEcCC
Q 003271 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPS 651 (835)
Q Consensus 575 ~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~---~~V~sl~fsp~ 651 (835)
..+.+.++|. .|.++..+.........+.+.++|.+++... ..++.+|+.... +..+.... ..-..+...|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v--~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV--IWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E--EEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE--EEeeecCCcccccccccEECCC
Confidence 4556667774 4455555433222222267788888887665 778888887432 22222111 11245667788
Q ss_pred CCcEEEEEe-------C-----CCcEEEEECCCCeeeeEee------------------------------cCceEEEEe
Q 003271 652 KEDLLCSCD-------N-----NSEIRYWSINNGSCAGVFK------------------------------SGATQMRFQ 689 (835)
Q Consensus 652 g~~ll~sgs-------~-----Dg~I~iwDl~s~~~~~~~~------------------------------~~i~~l~fs 689 (835)
|+.++++.. . .-.|..+| .+|+.+..+. .++.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 876555541 0 11344455 5555443321 236788999
Q ss_pred cCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCC
Q 003271 690 PRLGRILAAAIE-NYISILDVETQVCRLKLQGH 721 (835)
Q Consensus 690 p~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h 721 (835)
+.++.|++.+.. ..|..+|.++++....+..+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 977888888876 48999999999888877654
No 486
>PRK05560 DNA gyrase subunit A; Validated
Probab=89.42 E-value=55 Score=40.94 Aligned_cols=229 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred CCCCEEEEEECCCeEEEEecCCCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEE--EECCCCe---
Q 003271 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINNGS--- 674 (835)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i--wDl~s~~--- 674 (835)
++...+++-+.+|.|+.-.+.+.......-.+ ..+.+..+........+++..+....+++ +++....
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~ 575 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTA 575 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCC
Q ss_pred --------eeeEeecCceEEEEec---CCCEEEEEEcCCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 675 --------CAGVFKSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 675 --------~~~~~~~~i~~l~fsp---~~~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
....-...+..+.... +...++..+.+|.++-.++.. +.....+.....-+..+..+.+..+
T Consensus 576 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~l 655 (805)
T PRK05560 576 RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDI 655 (805)
T ss_pred CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEE
Q ss_pred EEEEeCCeEEEEEcCC------CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc----------E
Q 003271 737 LASVSDELVRVWSIGS------GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----------T 800 (835)
Q Consensus 737 LasgsDg~I~IwDl~t------~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~----------~ 800 (835)
++....|.+..+.+.. ...+..+..+.....-+..+.+.++..+++..+..|.++...+..-. .
T Consensus 656 ll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~ 735 (805)
T PRK05560 656 LLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVIT 735 (805)
T ss_pred EEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEe
Q ss_pred EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 801 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 801 ~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.+....+.+..+........++..+.+|.+..++
T Consensus 736 lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~ 770 (805)
T PRK05560 736 IKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTR 770 (805)
T ss_pred eeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEE
No 487
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=89.13 E-value=0.33 Score=59.21 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=3.0
Q ss_pred cccccc
Q 003271 280 QQQKSL 285 (835)
Q Consensus 280 ~~~~~~ 285 (835)
+|.+||
T Consensus 2018 ~q~~~~ 2023 (2131)
T KOG4369|consen 2018 AQQSFM 2023 (2131)
T ss_pred cCCCCC
Confidence 345555
No 488
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.05 E-value=12 Score=35.47 Aligned_cols=115 Identities=12% Similarity=0.094 Sum_probs=71.3
Q ss_pred EEEECCCCCEEEEEECCCeEEEEecCCCCc-------eeEEeecCCCCeEEEEEcC----CCCcEEEEEeCCCcEEEEEC
Q 003271 602 DVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSI 670 (835)
Q Consensus 602 sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-------~~~~~~~h~~~V~sl~fsp----~g~~ll~sgs~Dg~I~iwDl 670 (835)
.-+|......|+.++.-|.|.|++...... .+. +..-...|++|+--+ ++..+|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~-~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS-FLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCcee-EEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 445666666788888889999998764321 122 233456677776543 3355666666 678999999
Q ss_pred CCCeee--eEeecCceEEEEecC---CCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271 671 NNGSCA--GVFKSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKL 718 (835)
Q Consensus 671 ~s~~~~--~~~~~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~~i~~l 718 (835)
.....+ +.+..++.++.+-.- ...++..+.+..|.-||.+-.+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 876543 455566777665322 234555555567777777665555544
No 489
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.98 E-value=6 Score=45.08 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=88.7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCC-------CEEEEEEcCCcEEEEECCCC-eEEE--EEc
Q 003271 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRL-------GRILAAAIENYISILDVETQ-VCRL--KLQ 719 (835)
Q Consensus 651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~-------~~ll~~s~dg~I~IwDl~t~-~~i~--~l~ 719 (835)
+...++..|+....++--|++.|+.+..+..+ -..+.|.|.. ..-++|-.+..|.-.|.+-. ..+. .++
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK 557 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK 557 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence 44445556667778888999999998887744 2256677753 23556667777777776632 2222 111
Q ss_pred C--CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 720 G--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 720 ~--h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
. ......|..-. ..-||++++ .|.|++||--.. .....+.+.+..|..+..+.+|.+|++.+.. .|.+.|+.
T Consensus 558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hccccccccccccc-cCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 1 12223333322 334677777 899999996443 2333455667889999999999987776654 66676763
No 490
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.84 E-value=2.4 Score=44.09 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=47.4
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCCcEEE--------ec-------cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 774 FHPTFPSLLVIGCYETLELWNMTENKTLT--------LS-------AHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~IwDl~~~~~~~--------l~-------~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+...+.+|++.+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 45578899999999999999999988651 11 3556788999998888777655 57778775
No 491
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.36 E-value=13 Score=44.38 Aligned_cols=165 Identities=12% Similarity=0.167 Sum_probs=80.7
Q ss_pred CcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE---EEcCCCCCeEEEEEcCCCCE
Q 003271 663 SEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 663 g~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~---~l~~h~~~I~sl~fspdg~~ 736 (835)
-.|+||++. |..+..+ .+.+-.+.|+.+ ..|++...+|.+++|++-...... -+......|..+.|..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 356667665 3332221 234566677765 668888999999999986432221 11223344665656567766
Q ss_pred EEEEeCCeEEEEEcCCCCCcceEEEeec---CCCceEEEE-EeCCCC-E-EEEEEcCCeEEEEEcC--CCcEEEeccCCC
Q 003271 737 LASVSDELVRVWSIGSGSKGECIHELSC---TGNKFHSCV-FHPTFP-S-LLVIGCYETLELWNMT--ENKTLTLSAHDK 808 (835)
Q Consensus 737 LasgsDg~I~IwDl~t~~~~~~i~~l~~---~~~~V~sv~-fspdg~-~-L~sgs~dg~I~IwDl~--~~~~~~l~~h~~ 808 (835)
+.+.++..+.+.++... .+.+... ......+-. +.|... . ++-....-...++-.. ......+.....
T Consensus 142 vlt~~g~v~~i~~~~~~----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEP----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred EEecCCcEEEEcCCCcc----hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 65555555555555442 1111111 111111111 112111 1 1111100011112222 222223333345
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 809 LVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 809 ~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.+..+.+||+.++|+--..+|.|.+
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEE
Confidence 6778888988888888888887765
No 492
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.27 E-value=67 Score=38.72 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=88.5
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee--EEeecCC------CCeEEEEEcCCCCcEEEEEe-CC--CcE
Q 003271 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHS------TTVMSLDFHPSKEDLLCSCD-NN--SEI 665 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~--~~~~~h~------~~V~sl~fsp~g~~ll~sgs-~D--g~I 665 (835)
.+.|..|.|..+++.+++...+|.|.+||........ ..-..+. ..|.........+.+++.+. .+ -.+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5679999999999999999999999999993322111 1111111 12222221112233444443 12 356
Q ss_pred EEEEC--CCCeeeeEe----e-cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-----CC-CCeEEEEEcC
Q 003271 666 RYWSI--NNGSCAGVF----K-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-----HK-NQVHSVCWNT 732 (835)
Q Consensus 666 ~iwDl--~s~~~~~~~----~-~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h~-~~I~sl~fsp 732 (835)
+++.+ ....+...- . .......|....+.++.- .++.|.+|++...+...++.- .. ..+.++. .|
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-PP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-cC
Confidence 77777 322222211 1 112333444445666655 778999999988766655432 11 2344443 34
Q ss_pred CCCEEEEEeCCeEEEEEcCCC
Q 003271 733 SGEYLASVSDELVRVWSIGSG 753 (835)
Q Consensus 733 dg~~LasgsDg~I~IwDl~t~ 753 (835)
..+.++.+.++.|++.|+.-.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhh
Confidence 555666677889999998754
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.15 E-value=5 Score=42.29 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=72.9
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEe---ecCCCceEEEEEeC
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHP 776 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l---~~~~~~V~sv~fsp 776 (835)
-.+||+.+++.............+-.+.+||++|.+|+ +| .+++|+...........+. -......-++..-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 34677777654432222222333345778999999988 44 6888886541110111111 12234445566678
Q ss_pred CCCEEEEEEcCC-eEEEEEcCC--CcEEEe--cc------CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 777 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--SA------HDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 777 dg~~L~sgs~dg-~I~IwDl~~--~~~~~l--~~------h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
||+.|++|+... +..+|.-.. .....+ .. ....---+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999999886 566666532 122211 11 111122456679999999988776554
No 494
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.97 E-value=83 Score=39.45 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=85.6
Q ss_pred EEEEECCCCeeeeEeecC-------ceEEEEecCCCE-EE-EEEc-----------CCcEEEEECCC-CeEEEEEc--CC
Q 003271 665 IRYWSINNGSCAGVFKSG-------ATQMRFQPRLGR-IL-AAAI-----------ENYISILDVET-QVCRLKLQ--GH 721 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~~-------i~~l~fsp~~~~-ll-~~s~-----------dg~I~IwDl~t-~~~i~~l~--~h 721 (835)
|+++|..+++.+..+... +..+.|+..... ++ ++.. +|.++.|++-. ++.+.-+. .-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 566666666555444322 334445544433 22 3221 34466666543 23221111 12
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEEcCCCc
Q 003271 722 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTENK 799 (835)
Q Consensus 722 ~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~--IwDl~~~~ 799 (835)
.+.|.++ .|...++++|-...+++||+...+.. ...++......|..+.+ .+..|++|.....|. .|+-.++.
T Consensus 935 ~~~v~Ai--~~f~~~~LagvG~~l~~YdlG~K~lL-Rk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 935 PGPVGAI--CPFQGRVLAGVGRFLRLYDLGKKKLL-RKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CccceEE--eccCCEEEEecccEEEEeeCChHHHH-hhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 3344444 46666888888899999999775221 11112223445666665 445688887766544 45555566
Q ss_pred EEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 800 TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 800 ~~~l~~--h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.+.+.. ....|+++.+- |...+|.+..=|.+.+
T Consensus 1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 654432 23456666654 4445666666666554
No 495
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=4.6 Score=50.92 Aligned_cols=137 Identities=10% Similarity=0.132 Sum_probs=79.8
Q ss_pred EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE--------cCCC-CEEEEEeCCeEEEEEcCCCCCc----c--eEEEe
Q 003271 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCW--------NTSG-EYLASVSDELVRVWSIGSGSKG----E--CIHEL 762 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f--------spdg-~~LasgsDg~I~IwDl~t~~~~----~--~i~~l 762 (835)
.+.|+.+.+|+.+++.....+.+....|..|.. -|.= ..|+.++--.|.++-+.-.... . ....+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 345677777777776555556555555555533 1221 2344444445555544322110 1 11233
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EEcCCC-------c--------------EEEec-cCCCCeeEEEEeCC
Q 003271 763 SCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTEN-------K--------------TLTLS-AHDKLVSSLAASTV 818 (835)
Q Consensus 763 ~~~~~~V~sv~fspdg~~L~sgs~dg~I~I--wDl~~~-------~--------------~~~l~-~h~~~V~~la~spd 818 (835)
...+..|+++....+|+ |+.+|.||.|+= |...++ + ...+. .+.++|..|++...
T Consensus 175 ~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 34466788888888887 555555664432 222211 0 11233 56779999999888
Q ss_pred CCEEEEEECCCcEEEeC
Q 003271 819 NGMVASASHDKCVKIWK 835 (835)
Q Consensus 819 g~~LaSgs~DG~V~IWd 835 (835)
..++.+-+..|+|.+||
T Consensus 254 R~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYD 270 (1311)
T ss_pred cceeeeeccCceEEEEE
Confidence 88999999999999996
No 496
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=87.55 E-value=75 Score=38.50 Aligned_cols=260 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred CEEEEEEeCCCCEEEEEeCC---------CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe--EEEEe
Q 003271 557 KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--VRVWD 625 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~D---------g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~--I~IWD 625 (835)
.+....+++++..++..... ..+.+.|... .....+...+..+.|+|++..++..+.++. ..+|-
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l 89 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYL 89 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEE
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEE---------EEe-----------------CCCcEEEEECC-CCeeeeE
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC---------SCD-----------------NNSEIRYWSIN-NGSCAGV 678 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~---------sgs-----------------~Dg~I~iwDl~-s~~~~~~ 678 (835)
+... . .+..+...|....|++.+..+++ .+. ....+.+.|.. .......
T Consensus 90 ~~~~-g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~ 165 (620)
T COG1506 90 VDVG-G---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGL 165 (620)
T ss_pred EecC-C---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCcccccccC
Q ss_pred eecCceEEEEecCCCEEEEEEcCCc-------EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---C-C----
Q 003271 679 FKSGATQMRFQPRLGRILAAAIENY-------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---D-E---- 743 (835)
Q Consensus 679 ~~~~i~~l~fsp~~~~ll~~s~dg~-------I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---D-g---- 743 (835)
....+....+++++..++....+.. ..++.. ....+..+......+..+.|.++|+.++..+ + +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~ 244 (620)
T COG1506 166 GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEG 244 (620)
T ss_pred CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCcccc
Q ss_pred -eEEEEEcCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcC--CeEEEEEcCCCcEEEeccCCCCeeEEEEeCC
Q 003271 744 -LVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCY--ETLELWNMTENKTLTLSAHDKLVSSLAASTV 818 (835)
Q Consensus 744 -~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv~fspdg~~L~sgs~d--g~I~IwDl~~~~~~~l~~h~~~V~~la~spd 818 (835)
.+.+++...+ +....+.... .....+.+.-++..++....+ +...++.+................-..|+.+
T Consensus 245 ~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~ 321 (620)
T COG1506 245 DFILLLDGELG---EVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVD 321 (620)
T ss_pred ceEEEEecccc---ccceeeccCCcccCcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeC
Q ss_pred CCEEEEEECC
Q 003271 819 NGMVASASHD 828 (835)
Q Consensus 819 g~~LaSgs~D 828 (835)
++.++..-..
T Consensus 322 ~~~~~~~~s~ 331 (620)
T COG1506 322 GRKLALAYSS 331 (620)
T ss_pred CCEEEEEecC
No 497
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.54 E-value=28 Score=38.40 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=60.7
Q ss_pred CeEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCcceE---EEe---------ecCCCceEEEEEeCCCCEEEEE
Q 003271 724 QVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECI---HEL---------SCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-D------g~I~IwDl~t~~~~~~i---~~l---------~~~~~~V~sv~fspdg~~L~sg 784 (835)
...+|++.++|.++++.- + ..|+.++.. +.....+ ..+ ......+-.++++|+|..|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 344677777888777766 6 678888765 3221111 011 1234568899999999977776
Q ss_pred EcCC-------e-------EEE--EEcCC-CcE---E--Eecc-----CCCCeeEEEEeCCCCEEEE
Q 003271 785 GCYE-------T-------LEL--WNMTE-NKT---L--TLSA-----HDKLVSSLAASTVNGMVAS 824 (835)
Q Consensus 785 s~dg-------~-------I~I--wDl~~-~~~---~--~l~~-----h~~~V~~la~spdg~~LaS 824 (835)
.... . ++| ||..+ +.. . .+.. ....|..+.+.+++++|+.
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5422 1 445 45544 211 1 2222 4567899999999987664
No 498
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=4.7 Score=50.90 Aligned_cols=202 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred eCCCeEEEEEcCCCeEEEEeccCCCCeEEEE--------ECCCCCEEEEEECCCeEEEEecC--CCCceeEEeecC----
Q 003271 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVR--------FSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGH---- 639 (835)
Q Consensus 574 s~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~--------fspdg~~Latgs~Dg~I~IWDl~--t~~~~~~~~~~h---- 639 (835)
+-|+.+.+|+.+++.....+.+-...|..|. |.|.=+++++.+.--.|.|+-+. +.......+..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Q ss_pred --CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271 640 --STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 717 (835)
Q Consensus 640 --~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~ 717 (835)
...|.|+....+|+ ++++|-++ .+|.+.-...-.-+......++.+..---.++.+ .+.+.
T Consensus 176 ~dg~~V~~I~~t~nGR-IF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---~~~~~---------- 238 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGR-IFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---LLSVP---------- 238 (1311)
T ss_pred cCCceEEEEEeccCCc-EEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhh---hhcCC----------
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC---------------------ceEEEEEe
Q 003271 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---------------------KFHSCVFH 775 (835)
Q Consensus 718 l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~---------------------~V~sv~fs 775 (835)
..+..+|..+..+..-.++.+-+ .++|.+||+.......+...-..+.. .|..+.-.
T Consensus 239 -~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~ 317 (1311)
T KOG1900|consen 239 -GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSAS 317 (1311)
T ss_pred -CCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcc
Q ss_pred CCCCEEEEEEcCCeEEEE
Q 003271 776 PTFPSLLVIGCYETLELW 793 (835)
Q Consensus 776 pdg~~L~sgs~dg~I~Iw 793 (835)
......+++-....|++|
T Consensus 318 es~~l~LvA~ts~GvRlY 335 (1311)
T KOG1900|consen 318 ESNDLHLVAITSTGVRLY 335 (1311)
T ss_pred cccceeEEEEecCCeEEE
No 499
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.98 E-value=23 Score=42.64 Aligned_cols=269 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec------CCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP------ASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~------gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (835)
...-|+.|.-|++.-.....+. ++..--++..+. .|-+.++.++|.-++--++....|.+
T Consensus 34 ~c~l~s~d~Giev~~~s~~~d~-----------s~l~~F~ip~f~dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~--- 99 (1243)
T COG5290 34 TCVLGSTDKGIEVAKESSIYDE-----------SGLKRFEIPFFPDKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPT--- 99 (1243)
T ss_pred EeecCCCCCCeeeeeeccccch-----------hheeEeccCCcchHhhhhhhhhhhheeeEEecCCcEEEEEcCCC---
Q ss_pred EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC----CCeEEEEEc--------
Q 003271 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS----TTVMSLDFH-------- 649 (835)
Q Consensus 582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~----~~V~sl~fs-------- 649 (835)
.....+..+..-...|...+|+.|...++....+..|.+++-.-.-.....+.... +.-..+.|-
T Consensus 100 ---p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrg 176 (1243)
T COG5290 100 ---PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRG 176 (1243)
T ss_pred ---cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccc
Q ss_pred ----------------CCCCcEEEEEeCCCcEEEE--ECCCCeeeeEeecC-----ceE------------------EEE
Q 003271 650 ----------------PSKEDLLCSCDNNSEIRYW--SINNGSCAGVFKSG-----ATQ------------------MRF 688 (835)
Q Consensus 650 ----------------p~g~~ll~sgs~Dg~I~iw--Dl~s~~~~~~~~~~-----i~~------------------l~f 688 (835)
..|+ +........+..| |..-...-+.-..+ +.+ +.|
T Consensus 177 k~~raqlrdptmp~~vD~G~--l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSW 254 (1243)
T COG5290 177 KGARAQLRDPTMPYMVDYGD--LFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSW 254 (1243)
T ss_pred cchhhhccCCCCcccccccc--eeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhcccc
Q ss_pred ecCCCEEEEEEcCCc-----EEEEECC---CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEE
Q 003271 689 QPRLGRILAAAIENY-----ISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 760 (835)
Q Consensus 689 sp~~~~ll~~s~dg~-----I~IwDl~---t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~ 760 (835)
-|.|..+++...||. |.++.-+ .|+.-.... ....+..++|+-....++.+..+.|.+|-..+- ....
T Consensus 255 kpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~-~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy---hWYL 330 (1243)
T COG5290 255 KPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVG-CDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY---HWYL 330 (1243)
T ss_pred ccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCC-chhhhhhhhhhHHHHHHHHhhcceEEEEEccce---EEEE
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 761 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 761 ~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
.....-..+.-+.|+|....-+.-...+.|...+.....
T Consensus 331 K~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~ 369 (1243)
T COG5290 331 KVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSEKK 369 (1243)
T ss_pred EEeecCCCcceeeeccccCcEEEEecCCeEEEEEeehhh
No 500
>PRK05560 DNA gyrase subunit A; Validated
Probab=86.90 E-value=94 Score=38.92 Aligned_cols=262 Identities=12% Similarity=0.074 Sum_probs=0.0
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec--------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~--------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
.+-++...+++-+.+|.|+.-++.+......-. .-.+.+..+........|+..+..|.+....+..-...-
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS 572 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Q ss_pred -----------EEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCC-------CeeeeEeecC--ceEEEEecCC
Q 003271 634 -----------RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKSG--ATQMRFQPRL 692 (835)
Q Consensus 634 -----------~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwDl~s-------~~~~~~~~~~--i~~l~fsp~~ 692 (835)
..+.....-|.++.+... ....++..+.+|.|+--++.. +.....++.+ +..+......
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~ 652 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD 652 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC
Q ss_pred CEEEEEEcCCcEEEEECC---------CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEc------CCCCCc
Q 003271 693 GRILAAAIENYISILDVE---------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI------GSGSKG 756 (835)
Q Consensus 693 ~~ll~~s~dg~I~IwDl~---------t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl------~t~~~~ 756 (835)
..+++.+..|.+..+.+. .|.....+.....-+..+.+.+++.+++..+ .|.++...+ +.+..+
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG 732 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG 732 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEE
Q 003271 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 825 (835)
Q Consensus 757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSg 825 (835)
.....+......+..+........+++.+.+|.+..++.. .+.........|..+.+..++..+...
T Consensus 733 ~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~--eI~~~gR~a~GVk~I~L~~~D~V~~~~ 799 (805)
T PRK05560 733 VITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS--EISITGRNTQGVRLIRLDEGDKVVSVA 799 (805)
T ss_pred EEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH--HCCccccCCCCeeeEecCCCCEEEEEE
Done!