Query 003271
Match_columns 835
No_of_seqs 1181 out of 3052
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 19:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 4E-42 1.4E-46 388.8 41.5 282 549-835 102-408 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 3.2E-41 1.1E-45 371.0 46.5 287 544-835 44-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 6.9E-41 2.4E-45 366.2 43.4 284 547-835 24-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 8.5E-40 2.9E-44 362.3 46.1 288 544-835 53-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 8.7E-41 3E-45 373.6 34.4 289 544-835 55-372 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 3.4E-39 1.2E-43 349.2 42.0 282 546-832 4-297 (304)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.5E-39 2.6E-43 353.0 43.3 290 545-835 5-332 (345)
8 1nr0_A Actin interacting prote 100.0 2.7E-39 9.3E-44 384.6 42.6 304 508-835 162-608 (611)
9 1nr0_A Actin interacting prote 100.0 1.3E-38 4.5E-43 378.7 46.9 332 497-835 62-564 (611)
10 3frx_A Guanine nucleotide-bind 100.0 3.2E-38 1.1E-42 344.2 44.7 286 542-835 4-314 (319)
11 4ery_A WD repeat-containing pr 100.0 3.2E-38 1.1E-42 341.2 43.9 286 545-835 13-309 (312)
12 1erj_A Transcriptional repress 100.0 3.4E-38 1.2E-42 354.2 43.1 280 553-835 62-386 (393)
13 2xzm_R RACK1; ribosome, transl 100.0 1.2E-37 4.2E-42 342.6 43.2 285 544-835 10-337 (343)
14 2ymu_A WD-40 repeat protein; u 100.0 2E-37 6.9E-42 362.9 47.0 306 500-835 268-577 (577)
15 4g56_B MGC81050 protein; prote 100.0 2.1E-38 7.2E-43 351.7 35.1 279 552-835 39-340 (357)
16 4gqb_B Methylosome protein 50; 100.0 3.5E-38 1.2E-42 348.7 36.7 277 553-835 28-328 (344)
17 2hes_X YDR267CP; beta-propelle 100.0 1.6E-37 5.5E-42 340.3 41.5 287 545-835 4-325 (330)
18 3zwl_B Eukaryotic translation 100.0 9E-37 3.1E-41 333.8 44.0 283 546-835 23-343 (369)
19 3ow8_A WD repeat-containing pr 100.0 7.4E-37 2.5E-41 334.2 43.1 270 505-796 47-320 (321)
20 1vyh_C Platelet-activating fac 100.0 2.3E-37 7.8E-42 349.8 38.4 266 507-796 121-410 (410)
21 4aow_A Guanine nucleotide-bind 100.0 3.5E-36 1.2E-40 326.6 46.0 285 544-835 27-334 (340)
22 1gxr_A ESG1, transducin-like e 100.0 1.7E-36 5.8E-41 327.8 42.6 278 551-835 47-334 (337)
23 2ymu_A WD-40 repeat protein; u 100.0 2.9E-36 1E-40 353.1 47.4 306 500-835 227-536 (577)
24 1r5m_A SIR4-interacting protei 100.0 9E-37 3.1E-41 340.5 39.9 308 507-835 58-422 (425)
25 2pm9_A Protein WEB1, protein t 100.0 5.1E-38 1.8E-42 351.4 27.8 309 507-835 26-411 (416)
26 1sq9_A Antiviral protein SKI8; 100.0 1.5E-36 5E-41 337.8 37.7 285 545-835 6-392 (397)
27 4gqb_B Methylosome protein 50; 100.0 7.7E-37 2.6E-41 338.0 35.1 242 553-800 80-334 (344)
28 2ynn_A Coatomer subunit beta'; 100.0 6.9E-36 2.4E-40 323.2 41.0 273 503-797 22-302 (304)
29 3vl1_A 26S proteasome regulato 100.0 3.1E-36 1.1E-40 338.1 37.9 310 501-835 63-416 (420)
30 1k8k_C P40, ARP2/3 complex 41 100.0 7E-36 2.4E-40 328.5 37.5 280 551-835 4-358 (372)
31 3dm0_A Maltose-binding peripla 100.0 2.3E-35 7.9E-40 355.6 43.4 283 546-835 373-690 (694)
32 3frx_A Guanine nucleotide-bind 100.0 7.5E-35 2.6E-39 317.5 43.1 273 506-798 30-318 (319)
33 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-34 3.8E-39 310.5 42.6 278 544-835 7-293 (313)
34 1got_B GT-beta; complex (GTP-b 100.0 4.7E-35 1.6E-39 321.8 40.5 263 507-794 68-340 (340)
35 3i2n_A WD repeat-containing pr 100.0 2.4E-35 8.3E-40 321.8 35.6 286 548-835 11-350 (357)
36 3ei3_B DNA damage-binding prot 100.0 5.1E-35 1.7E-39 325.1 37.1 284 544-835 62-379 (383)
37 3k26_A Polycomb protein EED; W 100.0 1.3E-35 4.5E-40 324.7 31.5 284 549-835 12-363 (366)
38 1r5m_A SIR4-interacting protei 100.0 1.5E-34 5.1E-39 322.5 38.1 276 552-835 42-358 (425)
39 4g56_B MGC81050 protein; prote 100.0 3.1E-35 1.1E-39 326.2 32.3 282 481-798 44-344 (357)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.7E-34 1.9E-38 314.0 42.0 279 506-801 28-339 (345)
41 2pbi_B Guanine nucleotide-bind 100.0 3.2E-34 1.1E-38 317.5 39.2 265 507-794 77-354 (354)
42 2xzm_R RACK1; ribosome, transl 100.0 6.9E-34 2.3E-38 312.7 40.8 277 505-798 38-341 (343)
43 4ery_A WD repeat-containing pr 100.0 2E-33 6.8E-38 303.5 41.9 268 505-796 34-311 (312)
44 3dwl_C Actin-related protein 2 100.0 7.9E-36 2.7E-40 330.2 22.3 283 550-835 6-376 (377)
45 3v7d_B Cell division control p 100.0 5.6E-33 1.9E-37 316.8 46.5 297 507-834 133-459 (464)
46 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-33 1.3E-37 317.3 44.4 294 506-835 129-439 (445)
47 3sfz_A APAF-1, apoptotic pepti 100.0 9.2E-34 3.1E-38 362.6 43.3 311 504-835 625-1031(1249)
48 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-33 6.3E-38 348.8 44.6 189 505-716 28-247 (902)
49 3v7d_B Cell division control p 100.0 2.8E-33 9.6E-38 319.3 42.3 280 546-835 112-418 (464)
50 3gre_A Serine/threonine-protei 100.0 1.4E-34 4.8E-39 327.4 31.2 283 546-835 53-437 (437)
51 1gxr_A ESG1, transducin-like e 100.0 7E-34 2.4E-38 307.2 35.0 276 554-835 8-293 (337)
52 3mkq_A Coatomer beta'-subunit; 100.0 3.1E-33 1.1E-37 341.1 44.8 307 506-835 25-383 (814)
53 2j04_B YDR362CP, TAU91; beta p 100.0 4.3E-35 1.5E-39 341.8 27.1 313 505-835 172-514 (524)
54 1erj_A Transcriptional repress 100.0 3.4E-33 1.2E-37 313.4 41.5 288 501-798 71-390 (393)
55 3mmy_A MRNA export factor; mRN 100.0 6.4E-34 2.2E-38 311.0 34.7 288 544-834 28-342 (368)
56 4aow_A Guanine nucleotide-bind 100.0 1.2E-32 4.2E-37 298.7 44.5 276 506-799 51-339 (340)
57 2hes_X YDR267CP; beta-propelle 100.0 2E-33 7E-38 307.6 38.6 271 508-797 26-328 (330)
58 2pm9_A Protein WEB1, protein t 100.0 5E-35 1.7E-39 327.1 26.0 276 557-835 14-334 (416)
59 1pgu_A Actin interacting prote 100.0 3.5E-33 1.2E-37 328.2 41.8 302 506-835 30-363 (615)
60 1pgu_A Actin interacting prote 100.0 4.3E-33 1.5E-37 327.4 41.9 299 508-835 175-611 (615)
61 3iz6_a 40S ribosomal protein R 100.0 2.3E-34 7.9E-39 321.5 29.2 270 507-799 79-377 (380)
62 4aez_A CDC20, WD repeat-contai 100.0 6.1E-33 2.1E-37 311.6 39.4 277 549-835 85-377 (401)
63 3dw8_B Serine/threonine-protei 100.0 1.3E-33 4.3E-38 319.2 32.5 276 553-834 26-442 (447)
64 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-33 7.3E-38 302.9 32.7 282 550-835 6-334 (351)
65 2pm7_B Protein transport prote 100.0 4.5E-33 1.5E-37 300.0 35.1 249 549-797 3-285 (297)
66 1yfq_A Cell cycle arrest prote 100.0 1.9E-33 6.4E-38 305.7 31.7 276 547-830 3-315 (342)
67 4e54_B DNA damage-binding prot 100.0 3.9E-34 1.3E-38 325.4 27.2 279 549-835 113-427 (435)
68 4gga_A P55CDC, cell division c 100.0 2.4E-32 8.2E-37 308.9 41.5 268 558-835 108-392 (420)
69 4h5i_A Guanine nucleotide-exch 100.0 2.9E-33 9.8E-38 311.5 32.6 277 556-835 15-340 (365)
70 3mkq_A Coatomer beta'-subunit; 100.0 6.2E-33 2.1E-37 338.5 38.3 284 546-835 4-299 (814)
71 4a11_B DNA excision repair pro 100.0 1.2E-32 4.3E-37 305.6 36.8 287 547-835 35-362 (408)
72 3dm0_A Maltose-binding peripla 100.0 2E-32 6.9E-37 329.9 41.6 273 506-797 395-693 (694)
73 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-32 4.9E-37 351.6 42.6 283 549-835 609-910 (1249)
74 3vl1_A 26S proteasome regulato 100.0 8.7E-34 3E-38 318.2 26.5 272 557-835 58-362 (420)
75 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-32 5.2E-37 311.8 36.2 270 547-835 125-411 (435)
76 4ggc_A P55CDC, cell division c 100.0 8.8E-32 3E-36 289.1 40.2 268 558-835 28-312 (318)
77 3zwl_B Eukaryotic translation 100.0 2.2E-31 7.6E-36 291.0 43.6 270 505-799 43-348 (369)
78 1sq9_A Antiviral protein SKI8; 100.0 2E-32 6.7E-37 304.5 33.8 274 507-799 27-397 (397)
79 1k8k_C P40, ARP2/3 complex 41 100.0 6.1E-32 2.1E-36 297.0 36.7 277 505-799 19-363 (372)
80 2oaj_A Protein SNI1; WD40 repe 100.0 4.1E-32 1.4E-36 336.7 39.1 329 497-835 101-658 (902)
81 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-31 5.9E-36 303.5 41.0 270 547-835 110-388 (445)
82 3bg1_A Protein SEC13 homolog; 100.0 8.7E-33 3E-37 300.7 28.9 247 550-796 8-292 (316)
83 4gga_A P55CDC, cell division c 100.0 4.6E-31 1.6E-35 298.3 42.8 270 507-801 117-399 (420)
84 4aez_A CDC20, WD repeat-contai 100.0 1.2E-31 4.2E-36 301.0 37.4 271 507-801 104-384 (401)
85 3k26_A Polycomb protein EED; W 100.0 7.3E-32 2.5E-36 294.9 34.3 285 481-796 20-365 (366)
86 2pm7_B Protein transport prote 100.0 7.5E-32 2.6E-36 290.5 33.7 245 591-835 3-282 (297)
87 3i2n_A WD repeat-containing pr 100.0 4.8E-32 1.7E-36 295.7 31.8 275 507-800 32-356 (357)
88 3jrp_A Fusion protein of prote 100.0 2.6E-31 8.8E-36 292.0 33.3 249 548-797 4-287 (379)
89 3odt_A Protein DOA1; ubiquitin 100.0 1E-30 3.5E-35 279.7 36.6 265 506-802 29-301 (313)
90 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-31 5.4E-36 299.7 30.4 276 557-835 36-339 (402)
91 3ei3_B DNA damage-binding prot 100.0 4.6E-31 1.6E-35 293.1 33.8 265 507-797 87-382 (383)
92 3bg1_A Protein SEC13 homolog; 100.0 5.7E-32 1.9E-36 294.3 24.0 244 592-835 8-290 (316)
93 4a11_B DNA excision repair pro 100.0 3.8E-30 1.3E-34 285.6 38.7 312 506-835 56-402 (408)
94 3dwl_C Actin-related protein 2 100.0 8.1E-32 2.8E-36 298.0 24.3 279 499-795 16-377 (377)
95 4e54_B DNA damage-binding prot 100.0 3.5E-31 1.2E-35 300.9 30.1 271 507-800 133-433 (435)
96 4ggc_A P55CDC, cell division c 100.0 9.2E-30 3.1E-34 273.3 39.1 268 507-799 37-317 (318)
97 3bws_A Protein LP49; two-domai 100.0 4.2E-30 1.4E-34 289.7 37.9 284 545-835 113-429 (433)
98 3jrp_A Fusion protein of prote 100.0 1.9E-30 6.4E-35 285.1 32.0 248 588-835 2-284 (379)
99 3vu4_A KMHSV2; beta-propeller 100.0 5E-30 1.7E-34 283.9 33.7 275 547-835 11-333 (355)
100 1p22_A F-BOX/WD-repeat protein 100.0 5E-30 1.7E-34 291.0 34.2 279 506-816 143-433 (435)
101 3dw8_B Serine/threonine-protei 100.0 9.2E-30 3.2E-34 287.5 32.5 286 481-796 30-445 (447)
102 3gre_A Serine/threonine-protei 100.0 8E-31 2.7E-35 296.5 23.6 262 562-835 34-356 (437)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.8E-29 1.6E-33 284.4 37.8 270 556-834 5-387 (450)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 5.9E-30 2E-34 286.9 27.9 275 507-801 48-346 (402)
105 2xyi_A Probable histone-bindin 100.0 2E-29 6.7E-34 286.3 32.2 243 591-835 122-407 (430)
106 4h5i_A Guanine nucleotide-exch 100.0 1.9E-29 6.6E-34 280.5 30.0 275 506-798 26-344 (365)
107 3lrv_A PRE-mRNA-splicing facto 100.0 2.9E-30 9.8E-35 283.5 22.5 263 562-834 43-329 (343)
108 1yfq_A Cell cycle arrest prote 100.0 7.3E-29 2.5E-33 269.5 33.1 260 507-794 24-321 (342)
109 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-30 5.3E-35 303.4 20.0 254 564-822 170-458 (524)
110 1l0q_A Surface layer protein; 100.0 1.7E-27 5.8E-32 264.6 41.8 273 507-807 3-286 (391)
111 3jro_A Fusion protein of prote 100.0 1.9E-29 6.4E-34 307.3 27.4 250 548-835 2-282 (753)
112 2xyi_A Probable histone-bindin 100.0 8.2E-29 2.8E-33 281.1 30.4 251 548-798 121-411 (430)
113 1l0q_A Surface layer protein; 100.0 1.3E-27 4.6E-32 265.4 39.0 260 568-835 3-272 (391)
114 2j04_A TAU60, YPL007P, hypothe 100.0 2.2E-29 7.5E-34 289.6 24.0 260 553-835 13-294 (588)
115 3mmy_A MRNA export factor; mRN 100.0 1.1E-27 3.9E-32 261.4 36.5 284 480-801 40-353 (368)
116 3f3f_A Nucleoporin SEH1; struc 100.0 4.5E-28 1.5E-32 261.2 32.7 278 506-801 23-341 (351)
117 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-29 1.2E-33 287.8 22.5 243 553-827 83-350 (588)
118 4gq1_A NUP37; propeller, trans 100.0 1.2E-28 4.1E-33 276.7 25.4 262 552-831 86-383 (393)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.6E-26 1.2E-30 260.6 38.3 244 550-796 97-390 (450)
120 1nir_A Nitrite reductase; hemo 100.0 1.5E-25 5.2E-30 262.6 39.1 307 506-835 149-511 (543)
121 3bws_A Protein LP49; two-domai 99.9 5.4E-25 1.8E-29 247.9 38.7 277 500-797 128-432 (433)
122 3vu4_A KMHSV2; beta-propeller 99.9 3.9E-26 1.3E-30 252.6 28.4 243 581-835 3-268 (355)
123 3jro_A Fusion protein of prote 99.9 1.5E-26 5.3E-31 281.6 24.0 233 505-754 20-287 (753)
124 3lrv_A PRE-mRNA-splicing facto 99.9 7.9E-26 2.7E-30 248.1 26.4 261 503-797 45-333 (343)
125 2w18_A PALB2, fancn, partner a 99.9 1.3E-24 4.3E-29 236.1 34.7 282 544-835 24-354 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-24 4.3E-29 246.1 31.3 263 549-820 111-410 (415)
127 4gq1_A NUP37; propeller, trans 99.9 1.7E-25 5.7E-30 251.1 22.4 233 504-751 99-388 (393)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 3E-24 1E-28 243.0 26.4 271 556-835 63-384 (415)
129 2w18_A PALB2, fancn, partner a 99.9 1.7E-23 6E-28 227.2 29.6 250 538-795 69-355 (356)
130 3vgz_A Uncharacterized protein 99.9 2.2E-22 7.4E-27 219.3 38.1 266 556-828 41-334 (353)
131 1nir_A Nitrite reductase; hemo 99.9 3.2E-23 1.1E-27 242.8 32.3 266 562-835 144-455 (543)
132 3u4y_A Uncharacterized protein 99.9 1.5E-22 5.1E-27 219.3 34.8 271 562-835 4-301 (331)
133 1ri6_A Putative isomerase YBHE 99.9 2.4E-22 8.1E-27 217.5 34.2 264 569-835 7-305 (343)
134 2ecf_A Dipeptidyl peptidase IV 99.9 6E-23 2E-27 248.3 30.9 273 555-835 36-410 (741)
135 2ecf_A Dipeptidyl peptidase IV 99.9 2.4E-22 8.1E-27 243.0 32.3 270 557-834 110-455 (741)
136 1ri6_A Putative isomerase YBHE 99.9 1.8E-21 6.1E-26 210.6 35.6 293 508-820 7-335 (343)
137 2ojh_A Uncharacterized protein 99.9 2E-22 6.7E-27 212.2 26.8 252 572-829 17-293 (297)
138 3u4y_A Uncharacterized protein 99.9 1.3E-21 4.6E-26 211.8 33.8 290 506-819 10-326 (331)
139 1pby_B Quinohemoprotein amine 99.9 1.1E-21 3.9E-26 211.6 31.9 260 568-835 2-307 (337)
140 3o4h_A Acylamino-acid-releasin 99.9 5.5E-22 1.9E-26 233.5 29.2 267 555-835 21-312 (582)
141 2ojh_A Uncharacterized protein 99.9 6.4E-22 2.2E-26 208.3 26.1 236 550-788 36-293 (297)
142 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-22 6E-27 243.3 22.4 273 557-835 18-390 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.9 3.4E-21 1.2E-25 231.8 32.5 272 555-835 81-432 (706)
144 1k32_A Tricorn protease; prote 99.9 3.9E-21 1.3E-25 242.3 33.7 276 548-835 92-458 (1045)
145 1pby_B Quinohemoprotein amine 99.9 5.9E-21 2E-25 206.0 27.8 266 507-801 2-314 (337)
146 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-21 1.1E-25 232.4 28.0 297 507-826 29-428 (723)
147 1k32_A Tricorn protease; prote 99.9 5.8E-21 2E-25 240.7 29.1 276 548-835 196-499 (1045)
148 3hfq_A Uncharacterized protein 99.9 6.1E-20 2.1E-24 200.7 33.6 257 576-834 15-313 (347)
149 3hfq_A Uncharacterized protein 99.9 1.4E-19 4.7E-24 197.9 33.0 248 553-802 37-324 (347)
150 1jmx_B Amine dehydrogenase; ox 99.9 5.9E-20 2E-24 199.4 28.2 268 560-835 4-322 (349)
151 3pe7_A Oligogalacturonate lyas 99.9 4.3E-20 1.5E-24 204.5 27.3 285 547-834 22-378 (388)
152 3scy_A Hypothetical bacterial 99.9 7.4E-19 2.5E-23 193.4 36.7 260 554-816 48-360 (361)
153 3vgz_A Uncharacterized protein 99.9 4.8E-19 1.6E-23 192.8 32.7 233 597-835 40-300 (353)
154 3scy_A Hypothetical bacterial 99.8 7.6E-19 2.6E-23 193.3 33.8 264 567-834 13-333 (361)
155 2z3z_A Dipeptidyl aminopeptida 99.8 1.2E-19 4.3E-24 218.1 30.0 241 551-799 116-437 (706)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-19 8.5E-24 204.0 27.4 238 555-795 36-331 (434)
157 1z68_A Fibroblast activation p 99.8 4.6E-20 1.6E-24 222.4 19.7 269 560-835 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.8E-18 1.7E-22 188.1 31.3 265 569-835 4-338 (365)
159 1z68_A Fibroblast activation p 99.8 4E-19 1.4E-23 214.2 23.1 302 507-835 28-440 (719)
160 1jmx_B Amine dehydrogenase; ox 99.8 5.4E-18 1.8E-22 183.9 28.9 272 502-802 7-330 (349)
161 3c5m_A Oligogalacturonate lyas 99.8 8.7E-19 3E-23 193.9 20.7 270 558-834 38-378 (396)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 6.5E-17 2.2E-21 179.0 33.1 244 554-799 38-343 (365)
163 3o4h_A Acylamino-acid-releasin 99.8 2.9E-18 9.9E-23 201.8 22.7 228 597-835 21-273 (582)
164 4a5s_A Dipeptidyl peptidase 4 99.8 6.4E-18 2.2E-22 205.1 25.3 263 556-827 17-382 (740)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 1.6E-17 5.3E-22 189.2 22.8 210 577-798 23-279 (434)
166 4a5s_A Dipeptidyl peptidase 4 99.8 1.8E-16 6.3E-21 192.3 32.7 293 507-827 29-435 (740)
167 2oiz_A Aromatic amine dehydrog 99.8 2.1E-16 7.3E-21 175.2 29.6 262 566-835 14-331 (361)
168 3azo_A Aminopeptidase; POP fam 99.8 8.7E-17 3E-21 191.7 27.5 279 550-834 18-363 (662)
169 2oiz_A Aromatic amine dehydrog 99.7 2.4E-16 8.2E-21 174.8 27.9 260 550-820 46-360 (361)
170 2gop_A Trilobed protease; beta 99.7 8.3E-16 2.8E-20 167.4 29.9 251 557-834 16-327 (347)
171 3fvz_A Peptidyl-glycine alpha- 99.7 1.1E-15 3.9E-20 166.7 29.8 238 555-797 23-322 (329)
172 2dg1_A DRP35, lactonase; beta 99.7 9.9E-16 3.4E-20 166.2 28.1 266 556-828 6-300 (333)
173 3pe7_A Oligogalacturonate lyas 99.7 4.9E-16 1.7E-20 171.8 25.8 243 549-797 74-384 (388)
174 1qks_A Cytochrome CD1 nitrite 99.7 1.7E-14 5.8E-19 169.2 39.9 306 507-835 168-535 (567)
175 1q7f_A NHL, brain tumor CG1071 99.7 1E-14 3.4E-19 154.8 33.3 235 553-798 27-281 (286)
176 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-14 3.8E-19 154.4 32.1 231 595-835 27-277 (286)
177 3fvz_A Peptidyl-glycine alpha- 99.7 4.5E-15 1.6E-19 161.9 28.6 232 597-835 23-319 (329)
178 2z2n_A Virginiamycin B lyase; 99.7 1.8E-13 6.1E-18 144.9 39.7 272 551-832 10-290 (299)
179 2dg1_A DRP35, lactonase; beta 99.7 5.2E-14 1.8E-18 152.5 34.9 243 547-796 36-315 (333)
180 3azo_A Aminopeptidase; POP fam 99.7 1.5E-15 5.2E-20 181.0 24.6 237 560-803 81-375 (662)
181 2xdw_A Prolyl endopeptidase; a 99.7 1.3E-14 4.5E-19 175.0 28.9 243 553-799 122-416 (710)
182 2gop_A Trilobed protease; beta 99.7 2.4E-14 8.3E-19 155.8 28.3 232 556-809 59-342 (347)
183 3e5z_A Putative gluconolactona 99.7 4.2E-14 1.4E-18 151.1 29.3 241 549-801 21-290 (296)
184 3dsm_A Uncharacterized protein 99.6 6.9E-14 2.4E-18 152.6 30.4 249 575-835 15-299 (328)
185 1qks_A Cytochrome CD1 nitrite 99.6 4.3E-13 1.5E-17 157.3 38.3 263 565-835 165-474 (567)
186 3c5m_A Oligogalacturonate lyas 99.6 1.4E-14 4.9E-19 159.8 23.8 235 559-802 84-389 (396)
187 3e5z_A Putative gluconolactona 99.6 1.1E-13 3.9E-18 147.7 29.1 236 589-833 19-282 (296)
188 2qc5_A Streptogramin B lactona 99.6 1.8E-12 6E-17 137.2 37.9 273 551-834 15-296 (300)
189 3sjl_D Methylamine dehydrogena 99.6 8.8E-14 3E-18 154.4 28.5 271 561-835 38-360 (386)
190 2mad_H Methylamine dehydrogena 99.6 1.3E-12 4.3E-17 145.6 37.2 266 563-835 28-347 (373)
191 1rwi_B Serine/threonine-protei 99.6 1.5E-13 5.2E-18 143.9 26.5 236 557-799 25-266 (270)
192 2bkl_A Prolyl endopeptidase; m 99.6 2.4E-14 8.4E-19 172.3 23.0 245 553-804 118-404 (695)
193 3dsm_A Uncharacterized protein 99.6 3.1E-13 1E-17 147.5 28.8 252 557-816 45-320 (328)
194 2xdw_A Prolyl endopeptidase; a 99.6 5.6E-13 1.9E-17 160.8 30.4 266 565-835 81-411 (710)
195 3no2_A Uncharacterized protein 99.6 1.2E-12 4E-17 139.6 29.4 239 566-814 4-272 (276)
196 1rwi_B Serine/threonine-protei 99.6 3.7E-13 1.3E-17 140.9 25.0 231 599-835 25-261 (270)
197 2z2n_A Virginiamycin B lyase; 99.5 3E-11 1E-15 127.5 37.7 237 553-799 54-297 (299)
198 2mad_H Methylamine dehydrogena 99.5 2.7E-11 9.1E-16 134.9 38.6 242 549-803 61-356 (373)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.7E-12 1.9E-16 134.7 31.7 237 552-797 14-299 (314)
200 3sjl_D Methylamine dehydrogena 99.5 4.1E-12 1.4E-16 141.0 29.2 260 548-818 72-384 (386)
201 2bkl_A Prolyl endopeptidase; m 99.5 7.5E-13 2.5E-17 159.3 25.3 266 564-835 76-394 (695)
202 3c75_H MADH, methylamine dehyd 99.5 1.9E-12 6.6E-17 145.9 26.8 266 565-835 82-399 (426)
203 1yr2_A Prolyl oligopeptidase; 99.5 1E-12 3.5E-17 159.3 26.2 243 554-803 161-447 (741)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 8E-12 2.7E-16 133.6 28.8 234 596-835 16-296 (314)
205 2qc5_A Streptogramin B lactona 99.5 2.7E-10 9.2E-15 120.3 35.9 234 553-796 59-299 (300)
206 1yr2_A Prolyl oligopeptidase; 99.4 7.6E-12 2.6E-16 151.7 25.8 266 564-835 115-438 (741)
207 3no2_A Uncharacterized protein 99.4 6.5E-11 2.2E-15 126.1 28.8 213 505-743 4-233 (276)
208 3hrp_A Uncharacterized protein 99.4 7E-11 2.4E-15 133.1 30.4 228 598-834 131-406 (409)
209 3c75_H MADH, methylamine dehyd 99.4 2.2E-11 7.6E-16 137.2 25.5 245 548-803 112-408 (426)
210 3g4e_A Regucalcin; six bladed 99.4 3.3E-10 1.1E-14 121.3 33.0 226 593-826 8-260 (297)
211 3g4e_A Regucalcin; six bladed 99.4 4.1E-10 1.4E-14 120.6 33.6 226 551-787 8-262 (297)
212 3iuj_A Prolyl endopeptidase; h 99.4 1.1E-11 3.7E-16 149.3 23.5 244 553-804 126-412 (693)
213 2qe8_A Uncharacterized protein 99.4 8.4E-12 2.9E-16 136.9 20.2 257 556-829 17-312 (343)
214 3hrp_A Uncharacterized protein 99.4 2.7E-10 9.3E-15 128.3 31.8 230 556-795 131-408 (409)
215 2ghs_A AGR_C_1268P; regucalcin 99.4 1.4E-09 4.9E-14 118.1 34.5 219 557-788 50-293 (326)
216 1mda_H Methylamine dehydrogena 99.3 2.3E-11 7.9E-16 134.8 19.7 256 546-817 57-366 (368)
217 1xip_A Nucleoporin NUP159; bet 99.3 2.2E-11 7.5E-16 135.5 18.9 172 557-741 39-232 (388)
218 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.6E-09 5.5E-14 119.5 33.6 253 566-835 102-375 (376)
219 3dr2_A Exported gluconolactona 99.3 2E-10 6.9E-15 123.4 25.5 232 591-833 38-302 (305)
220 3dr2_A Exported gluconolactona 99.3 2.6E-10 9.1E-15 122.5 26.2 232 550-794 39-303 (305)
221 2ghs_A AGR_C_1268P; regucalcin 99.3 1.9E-09 6.5E-14 117.2 32.6 219 599-827 50-291 (326)
222 1mda_H Methylamine dehydrogena 99.3 1.3E-10 4.6E-15 128.7 19.1 246 578-835 47-343 (368)
223 3hxj_A Pyrrolo-quinoline quino 99.2 2.1E-10 7.2E-15 123.4 19.4 256 557-834 61-320 (330)
224 1yiq_A Quinohemoprotein alcoho 99.2 7.1E-10 2.4E-14 133.2 25.6 264 567-835 70-502 (689)
225 2hz6_A Endoplasmic reticulum t 99.2 1.2E-13 4.1E-18 153.6 -7.5 223 566-799 8-238 (369)
226 1kb0_A Quinohemoprotein alcoho 99.2 2.4E-09 8.3E-14 128.3 28.5 261 567-835 77-504 (677)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 6.4E-09 2.2E-13 114.7 28.7 252 567-835 53-334 (376)
228 1kb0_A Quinohemoprotein alcoho 99.2 3.9E-09 1.3E-13 126.5 28.4 252 566-824 127-536 (677)
229 1yiq_A Quinohemoprotein alcoho 99.2 5.7E-09 2E-13 125.3 29.7 253 567-825 121-536 (689)
230 3iuj_A Prolyl endopeptidase; h 99.2 9.7E-10 3.3E-14 132.2 22.8 234 595-835 126-402 (693)
231 1npe_A Nidogen, entactin; glyc 99.1 6.8E-08 2.3E-12 101.3 32.8 245 568-820 2-263 (267)
232 1xip_A Nucleoporin NUP159; bet 99.1 6.1E-10 2.1E-14 123.9 17.3 168 642-826 39-232 (388)
233 2ece_A 462AA long hypothetical 99.1 2.5E-08 8.4E-13 111.6 28.3 221 562-785 88-399 (462)
234 3hxj_A Pyrrolo-quinoline quino 99.0 1.6E-09 5.4E-14 116.5 15.3 254 561-835 25-281 (330)
235 1fwx_A Nitrous oxide reductase 99.0 8.8E-09 3E-13 119.0 22.0 255 570-827 18-407 (595)
236 2qe8_A Uncharacterized protein 99.0 4.8E-09 1.6E-13 114.8 18.9 218 598-835 17-275 (343)
237 2ece_A 462AA long hypothetical 99.0 7.6E-08 2.6E-12 107.7 28.5 217 607-826 93-399 (462)
238 1kv9_A Type II quinohemoprotei 99.0 4E-08 1.4E-12 117.6 27.4 262 567-835 66-485 (668)
239 2hz6_A Endoplasmic reticulum t 99.0 3.8E-10 1.3E-14 125.2 7.4 199 608-820 8-216 (369)
240 2iwa_A Glutamine cyclotransfer 99.0 1.3E-07 4.3E-12 99.6 26.2 204 587-798 9-238 (266)
241 1fwx_A Nitrous oxide reductase 98.9 3.4E-08 1.1E-12 114.1 21.7 231 566-800 100-434 (595)
242 1npe_A Nidogen, entactin; glyc 98.9 7.8E-07 2.7E-11 93.1 30.1 221 610-835 2-235 (267)
243 2ad6_A Methanol dehydrogenase 98.9 2.3E-07 7.7E-12 108.9 27.8 261 567-835 62-491 (571)
244 4a2l_A BT_4663, two-component 98.9 3.4E-06 1.2E-10 102.8 38.7 263 555-834 262-567 (795)
245 4a2l_A BT_4663, two-component 98.9 3.4E-06 1.2E-10 102.7 37.4 264 555-834 214-522 (795)
246 1w6s_A Methanol dehydrogenase 98.8 4.5E-07 1.5E-11 106.7 26.9 263 567-835 62-500 (599)
247 3nol_A Glutamine cyclotransfer 98.8 3.4E-07 1.2E-11 95.5 22.6 192 588-787 32-245 (262)
248 2fp8_A Strictosidine synthase; 98.8 2.6E-06 8.8E-11 91.8 30.0 233 556-799 19-315 (322)
249 3v9f_A Two-component system se 98.8 7.4E-06 2.5E-10 99.5 36.4 272 555-835 257-565 (781)
250 2p4o_A Hypothetical protein; p 98.8 3.7E-06 1.3E-10 90.1 29.7 231 586-827 21-277 (306)
251 2fp8_A Strictosidine synthase; 98.8 2.9E-06 9.9E-11 91.4 28.5 230 598-835 19-310 (322)
252 2iwa_A Glutamine cyclotransfer 98.8 1.8E-06 6.1E-11 90.9 25.5 201 544-753 8-238 (266)
253 3nok_A Glutaminyl cyclase; bet 98.7 8.8E-07 3E-11 92.4 22.1 191 588-787 44-255 (268)
254 2p4o_A Hypothetical protein; p 98.7 1.3E-05 4.5E-10 85.7 32.0 236 544-788 21-279 (306)
255 3mbr_X Glutamine cyclotransfer 98.7 2E-06 6.9E-11 88.9 23.9 191 588-787 10-224 (243)
256 1flg_A Protein (quinoprotein e 98.7 6.9E-06 2.3E-10 96.5 31.7 262 568-835 69-513 (582)
257 1k3i_A Galactose oxidase precu 98.7 2.3E-07 8E-12 110.7 19.3 263 560-827 190-530 (656)
258 1kv9_A Type II quinohemoprotei 98.7 1.4E-06 4.7E-11 104.2 25.9 253 567-826 117-520 (668)
259 3v9f_A Two-component system se 98.7 1.9E-05 6.6E-10 95.9 34.7 268 555-835 210-521 (781)
260 1ijq_A LDL receptor, low-densi 98.7 7.2E-05 2.5E-09 80.6 35.2 226 569-799 3-240 (316)
261 3v64_C Agrin; beta propeller, 98.7 2.3E-05 8E-10 85.8 31.7 235 556-799 34-277 (349)
262 2ad6_A Methanol dehydrogenase 98.7 4.8E-06 1.7E-10 97.6 27.8 252 567-824 115-523 (571)
263 3nol_A Glutamine cyclotransfer 98.6 3.7E-06 1.3E-10 87.7 23.0 194 545-749 31-251 (262)
264 1w6s_A Methanol dehydrogenase 98.6 1.1E-05 3.9E-10 94.7 28.4 249 570-825 124-534 (599)
265 3v65_B Low-density lipoprotein 98.6 2.9E-05 9.9E-10 86.3 30.3 234 558-800 79-321 (386)
266 2xe4_A Oligopeptidase B; hydro 98.6 3.5E-06 1.2E-10 102.1 23.4 236 557-801 175-462 (751)
267 3v64_C Agrin; beta propeller, 98.5 8.1E-05 2.8E-09 81.5 31.6 227 600-834 36-271 (349)
268 1flg_A Protein (quinoprotein e 98.5 2.1E-05 7.3E-10 92.3 28.0 251 567-823 117-544 (582)
269 3tc9_A Hypothetical hydrolase; 98.5 2.2E-05 7.7E-10 88.6 26.9 231 599-834 138-426 (430)
270 3v65_B Low-density lipoprotein 98.5 8.4E-05 2.9E-09 82.5 30.9 226 601-834 80-314 (386)
271 1ijq_A LDL receptor, low-densi 98.5 0.00021 7.1E-09 77.0 33.2 217 611-834 3-234 (316)
272 3nok_A Glutaminyl cyclase; bet 98.5 1.1E-05 3.8E-10 84.1 20.8 175 642-826 56-253 (268)
273 3p5b_L Low density lipoprotein 98.5 0.0003 1E-08 78.4 34.4 227 569-800 85-323 (400)
274 3mbr_X Glutamine cyclotransfer 98.5 4.1E-05 1.4E-09 79.1 24.8 176 641-826 21-222 (243)
275 3sov_A LRP-6, low-density lipo 98.5 7.8E-05 2.7E-09 80.6 28.4 224 569-799 6-240 (318)
276 2xbg_A YCF48-like protein; pho 98.4 0.00021 7.1E-09 77.4 31.5 275 541-835 23-319 (327)
277 3tc9_A Hypothetical hydrolase; 98.4 0.00011 3.8E-09 82.8 28.8 233 557-796 138-429 (430)
278 3qqz_A Putative uncharacterize 98.4 0.00082 2.8E-08 70.1 32.9 200 549-750 20-251 (255)
279 3p5b_L Low density lipoprotein 98.3 0.00049 1.7E-08 76.7 32.1 217 611-834 85-316 (400)
280 4hw6_A Hypothetical protein, I 98.3 0.00015 5.2E-09 81.8 27.5 232 599-834 140-429 (433)
281 3sov_A LRP-6, low-density lipo 98.3 0.00037 1.3E-08 75.3 29.4 214 617-834 11-234 (318)
282 3m0c_C LDL receptor, low-densi 98.3 0.00052 1.8E-08 83.2 33.1 227 569-800 397-635 (791)
283 3qqz_A Putative uncharacterize 98.3 0.0002 6.8E-09 74.7 25.5 197 635-834 21-249 (255)
284 4hw6_A Hypothetical protein, I 98.3 0.00023 8E-09 80.3 27.9 232 557-796 140-432 (433)
285 3amr_A 3-phytase; beta-propell 98.3 0.0002 7E-09 77.6 25.9 183 566-751 39-262 (355)
286 2xe4_A Oligopeptidase B; hydro 98.2 7.7E-05 2.6E-09 90.3 24.5 190 642-834 175-394 (751)
287 1k3i_A Galactose oxidase precu 98.2 4.6E-05 1.6E-09 90.8 21.1 226 602-828 190-476 (656)
288 3kya_A Putative phosphatase; s 98.1 0.00087 3E-08 76.4 27.8 229 599-834 140-471 (496)
289 3m0c_C LDL receptor, low-densi 98.1 0.0021 7.3E-08 77.8 32.9 215 611-832 397-626 (791)
290 3kya_A Putative phosphatase; s 98.1 0.0012 4E-08 75.3 28.7 239 557-801 140-479 (496)
291 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0029 9.8E-08 74.8 32.1 218 611-834 8-233 (628)
292 2ism_A Putative oxidoreductase 98.0 0.0018 6.3E-08 70.7 26.2 225 555-785 30-333 (352)
293 3s94_A LRP-6, low-density lipo 98.0 0.01 3.5E-07 69.9 34.1 274 556-833 84-418 (619)
294 3s94_A LRP-6, low-density lipo 97.9 0.0022 7.7E-08 75.6 28.2 220 576-800 17-246 (619)
295 4a0p_A LRP6, LRP-6, low-densit 97.9 0.0089 3E-07 70.6 33.4 222 569-799 8-239 (628)
296 3a9g_A Putative uncharacterize 97.9 0.0067 2.3E-07 66.3 29.9 227 555-784 28-329 (354)
297 1n7d_A LDL receptor, low-densi 97.9 2.3E-05 7.9E-10 94.0 10.0 224 576-803 385-620 (699)
298 3ei3_A DNA damage-binding prot 97.9 0.057 2E-06 68.0 40.2 270 556-834 652-995 (1158)
299 3ott_A Two-component system se 97.8 0.037 1.3E-06 66.6 37.3 261 555-831 62-346 (758)
300 2xbg_A YCF48-like protein; pho 97.8 0.0027 9.2E-08 68.5 24.6 228 555-795 79-320 (327)
301 2p9w_A MAL S 1 allergenic prot 97.8 0.0068 2.3E-07 65.1 26.4 199 553-752 10-265 (334)
302 2xzh_A Clathrin heavy chain 1; 97.8 0.059 2E-06 57.5 34.2 246 576-831 48-325 (365)
303 2ism_A Putative oxidoreductase 97.8 0.0068 2.3E-07 66.2 26.8 222 598-826 31-333 (352)
304 3sre_A PON1, serum paraoxonase 97.8 0.0018 6E-08 70.9 21.4 192 600-795 52-296 (355)
305 2xzh_A Clathrin heavy chain 1; 97.7 0.072 2.5E-06 56.9 34.6 234 560-801 71-336 (365)
306 3ott_A Two-component system se 97.7 0.066 2.3E-06 64.3 37.1 266 555-834 145-444 (758)
307 2vpj_A Kelch-like protein 12; 97.7 0.0025 8.5E-08 67.3 21.6 229 566-803 14-284 (301)
308 1n7d_A LDL receptor, low-densi 97.7 0.00013 4.5E-09 87.4 12.1 211 618-834 385-610 (699)
309 3a9g_A Putative uncharacterize 97.7 0.018 6E-07 62.9 28.2 223 598-826 29-330 (354)
310 2p9w_A MAL S 1 allergenic prot 97.7 0.013 4.4E-07 63.0 25.8 206 593-801 8-269 (334)
311 3amr_A 3-phytase; beta-propell 97.7 0.007 2.4E-07 65.6 23.9 179 654-835 41-260 (355)
312 2g8s_A Glucose/sorbosone dehyd 97.6 0.011 3.8E-07 64.5 25.6 230 598-831 18-347 (353)
313 1bpo_A Protein (clathrin); cla 97.6 0.14 4.7E-06 56.8 36.1 246 576-831 47-324 (494)
314 3das_A Putative oxidoreductase 97.6 0.041 1.4E-06 59.8 29.3 231 592-826 26-326 (347)
315 3ei3_A DNA damage-binding prot 97.6 0.047 1.6E-06 68.8 33.6 271 555-835 553-910 (1158)
316 3ii7_A Kelch-like protein 7; p 97.5 0.012 4.2E-07 62.1 23.6 225 568-801 13-276 (306)
317 1bpo_A Protein (clathrin); cla 97.5 0.18 6.2E-06 55.8 35.5 234 560-801 70-335 (494)
318 2xn4_A Kelch-like protein 2; s 97.5 0.0058 2E-07 64.5 20.8 229 567-804 16-283 (302)
319 2g8s_A Glucose/sorbosone dehyd 97.5 0.014 4.8E-07 63.6 24.1 221 557-783 19-339 (353)
320 3sre_A PON1, serum paraoxonase 97.4 0.17 5.8E-06 55.1 30.8 201 549-751 43-297 (355)
321 3das_A Putative oxidoreductase 97.3 0.11 3.7E-06 56.4 28.2 236 548-785 24-326 (347)
322 4asc_A Kelch repeat and BTB do 97.3 0.026 9E-07 59.9 23.0 225 569-803 7-283 (315)
323 1zgk_A Kelch-like ECH-associat 97.3 0.0089 3.1E-07 63.4 18.8 228 565-803 23-293 (308)
324 2vpj_A Kelch-like protein 12; 97.3 0.0071 2.4E-07 63.7 17.7 214 608-829 14-264 (301)
325 4b8c_D Glucose-repressible alc 97.3 3.2E-05 1.1E-09 93.2 -0.8 14 804-817 706-719 (727)
326 3sbq_A Nitrous-oxide reductase 97.2 0.043 1.5E-06 62.4 23.6 255 570-826 73-453 (638)
327 3ii7_A Kelch-like protein 7; p 97.2 0.018 6.1E-07 60.8 19.7 210 610-828 13-257 (306)
328 2xn4_A Kelch-like protein 2; s 97.2 0.02 6.8E-07 60.3 19.7 217 610-835 17-273 (302)
329 3s25_A Hypothetical 7-bladed b 97.1 0.12 4E-06 55.1 24.6 214 565-803 23-261 (302)
330 2woz_A Kelch repeat and BTB do 97.1 0.068 2.3E-06 56.7 22.9 225 569-803 18-293 (318)
331 3s25_A Hypothetical 7-bladed b 97.1 0.094 3.2E-06 55.8 23.7 177 560-753 57-256 (302)
332 4b8c_D Glucose-repressible alc 97.0 0.00019 6.5E-09 86.5 2.0 9 576-584 487-495 (727)
333 4asc_A Kelch repeat and BTB do 96.9 0.071 2.4E-06 56.5 21.2 209 611-828 7-253 (315)
334 3pbp_A Nucleoporin NUP82; beta 96.9 0.037 1.3E-06 61.2 18.9 133 700-832 39-206 (452)
335 2uvk_A YJHT; unknown function, 96.9 0.023 7.9E-07 61.4 17.3 229 566-802 19-347 (357)
336 1cru_A Protein (soluble quinop 96.8 0.36 1.2E-05 54.4 27.2 102 598-699 27-162 (454)
337 2woz_A Kelch repeat and BTB do 96.8 0.11 3.8E-06 55.0 21.7 201 620-828 25-263 (318)
338 2be1_A Serine/threonine-protei 96.7 0.13 4.4E-06 55.7 21.3 190 610-802 11-236 (339)
339 1zgk_A Kelch-like ECH-associat 96.5 0.046 1.6E-06 57.8 16.1 211 608-829 24-273 (308)
340 1cru_A Protein (soluble quinop 96.4 0.99 3.4E-05 50.7 27.1 106 555-660 26-163 (454)
341 2uvk_A YJHT; unknown function, 96.4 0.2 7E-06 53.8 20.8 183 566-754 65-344 (357)
342 3iot_A Maltose-binding protein 96.4 0.0031 1.1E-07 71.2 6.1 13 53-65 337-349 (449)
343 2be1_A Serine/threonine-protei 96.3 0.096 3.3E-06 56.6 17.4 184 568-753 11-232 (339)
344 3b7f_A Glycosyl hydrolase, BNR 96.1 2.1 7.1E-05 46.7 27.8 254 555-816 54-391 (394)
345 1xi4_A Clathrin heavy chain; a 96.1 0.23 7.9E-06 62.5 20.9 216 576-801 47-293 (1630)
346 3b7f_A Glycosyl hydrolase, BNR 95.9 2.6 8.8E-05 45.9 27.0 257 568-833 23-367 (394)
347 1tl2_A L10, protein (tachylect 95.9 0.82 2.8E-05 46.1 20.1 171 653-831 4-203 (236)
348 1xi4_A Clathrin heavy chain; a 95.8 0.19 6.5E-06 63.3 18.3 233 561-801 71-335 (1630)
349 2zwa_A Leucine carboxyl methyl 95.8 0.3 1E-05 58.2 19.8 219 608-827 397-674 (695)
350 3pbp_A Nucleoporin NUP82; beta 95.8 0.66 2.2E-05 51.3 20.6 140 650-793 30-208 (452)
351 4hvt_A Ritya.17583.B, post-pro 95.7 0.74 2.5E-05 54.9 22.9 237 560-801 133-433 (711)
352 2zwa_A Leucine carboxyl methyl 95.4 0.47 1.6E-05 56.5 19.4 186 565-753 396-636 (695)
353 1tl2_A L10, protein (tachylect 95.2 1.7 5.7E-05 43.9 19.8 175 608-791 3-204 (236)
354 2wg3_C Hedgehog-interacting pr 95.0 6.1 0.00021 44.3 29.8 229 557-785 15-354 (463)
355 3iot_A Maltose-binding protein 94.4 0.012 4.1E-07 66.3 1.8 15 55-69 335-349 (449)
356 2wg3_C Hedgehog-interacting pr 93.8 10 0.00036 42.4 29.1 227 598-826 14-354 (463)
357 3sbq_A Nitrous-oxide reductase 93.8 2.8 9.5E-05 47.9 19.3 184 651-835 141-405 (638)
358 3qhy_B Beta-lactamase inhibito 93.3 1.9 6.6E-05 45.0 16.5 238 557-819 25-265 (282)
359 3qhy_B Beta-lactamase inhibito 93.2 1.6 5.5E-05 45.6 15.6 215 598-834 24-242 (282)
360 3uc1_A DNA gyrase subunit A; D 92.8 12 0.00039 40.0 23.1 262 567-829 3-321 (327)
361 3q6k_A 43.2 kDa salivary prote 90.6 22 0.00075 38.7 26.6 163 664-826 124-342 (381)
362 3kci_A Probable E3 ubiquitin-p 89.8 25 0.00085 38.0 28.8 229 599-834 54-341 (389)
363 1wp5_A Topoisomerase IV; broke 89.4 24 0.00083 37.4 22.3 231 565-797 3-277 (323)
364 3mvd_K Regulator of chromosome 89.1 29 0.00099 37.9 34.8 226 599-834 76-370 (423)
365 1sqj_A OXG-RCBH, oligoxylogluc 88.7 47 0.0016 39.7 26.6 145 555-701 14-190 (789)
366 4hvt_A Ritya.17583.B, post-pro 87.3 22 0.00075 42.1 19.8 220 602-826 133-415 (711)
367 1uuj_A Platelet-activating fac 87.2 0.64 2.2E-05 39.3 4.5 32 10-41 11-42 (88)
368 1zi0_A DNA gyrase subunit A; b 86.0 37 0.0012 35.6 21.9 222 607-832 1-271 (307)
369 1suu_A DNA gyrase subunit A; t 85.9 37 0.0013 35.6 27.4 229 564-795 5-281 (312)
370 3l6v_A GYRA, DNA gyrase subuni 84.2 50 0.0017 35.6 26.0 232 563-796 3-315 (370)
371 3kci_A Probable E3 ubiquitin-p 84.0 50 0.0017 35.5 29.3 232 558-797 55-345 (389)
372 2xtc_A F-box-like/WD repeat-co 83.1 0.82 2.8E-05 38.9 3.3 33 10-42 6-38 (90)
373 1zi0_A DNA gyrase subunit A; b 83.0 49 0.0017 34.6 25.9 231 565-797 1-277 (307)
374 3no0_A DNA gyrase subunit A; D 81.2 53 0.0018 33.8 22.2 195 598-797 24-246 (276)
375 1sqj_A OXG-RCBH, oligoxylogluc 80.1 1.1E+02 0.0036 36.6 27.8 142 597-741 14-188 (789)
376 2cn3_A Xyloglucanase, beta-1,4 79.8 1E+02 0.0035 36.3 25.4 103 557-660 24-151 (737)
377 3uc1_A DNA gyrase subunit A; D 79.7 66 0.0023 34.0 21.9 193 557-752 43-279 (327)
378 1suu_A DNA gyrase subunit A; t 79.5 65 0.0022 33.8 25.4 187 607-797 6-231 (312)
379 3l6v_A GYRA, DNA gyrase subuni 77.7 81 0.0028 34.0 23.2 224 605-831 3-309 (370)
380 3no0_A DNA gyrase subunit A; D 75.0 79 0.0027 32.4 20.5 192 556-751 24-245 (276)
381 3q6k_A 43.2 kDa salivary prote 73.4 1.1E+02 0.0036 33.2 23.8 162 578-740 124-341 (381)
382 2cn3_A Xyloglucanase, beta-1,4 72.9 1.5E+02 0.0052 34.8 24.9 99 599-699 24-151 (737)
383 2zux_A YESW protein; beta-prop 67.0 1.8E+02 0.0061 33.2 26.5 228 554-799 177-481 (591)
384 3f7f_A Nucleoporin NUP120; nuc 61.1 2.5E+02 0.0087 33.0 18.2 36 724-764 223-259 (729)
385 4gq2_M Nucleoporin NUP120; bet 58.8 69 0.0024 39.2 13.8 38 556-593 236-273 (950)
386 1wp5_A Topoisomerase IV; broke 57.5 1.9E+02 0.0065 30.3 23.8 222 607-832 3-271 (323)
387 4gq2_M Nucleoporin NUP120; bet 57.1 77 0.0026 38.8 13.8 35 767-801 236-270 (950)
388 1a12_A RCC1, regulator of chro 56.9 2.1E+02 0.0072 30.7 32.5 227 598-834 59-361 (413)
389 4d9s_A UVB-resistance protein 54.7 2.3E+02 0.0078 30.4 35.6 267 556-834 16-353 (406)
390 3mez_B Mannose-specific lectin 51.7 97 0.0033 27.0 10.0 26 726-752 59-84 (113)
391 3zwu_A Alkaline phosphatase PH 47.5 1.1E+02 0.0038 35.1 12.2 58 684-741 479-549 (592)
392 4h3o_A Lectin; cadmium, plant 47.3 1.1E+02 0.0038 26.3 9.5 25 727-752 54-78 (105)
393 3mvd_K Regulator of chromosome 46.3 3E+02 0.01 29.4 32.1 228 557-797 76-374 (423)
394 4a9v_A PHOX; hydrolase, beta-p 44.5 2.6E+02 0.009 31.9 14.4 60 723-785 476-549 (592)
395 3zwu_A Alkaline phosphatase PH 40.8 63 0.0022 37.2 8.7 58 558-615 478-548 (592)
396 3a0f_A Xyloglucanase; beta-pro 39.7 5.2E+02 0.018 30.3 25.3 145 596-743 19-203 (763)
397 3a0f_A Xyloglucanase; beta-pro 38.1 5.5E+02 0.019 30.1 31.5 147 554-702 19-203 (763)
398 3of7_A Regulator of chromosome 37.9 4.4E+02 0.015 28.8 27.9 191 598-796 148-404 (473)
399 3of7_A Regulator of chromosome 37.4 4.4E+02 0.015 28.8 27.5 147 641-795 148-339 (473)
400 1zvt_A Topoisomerase IV subuni 36.0 3.5E+02 0.012 27.2 13.1 138 695-834 5-159 (256)
401 4fhn_B Nucleoporin NUP120; pro 35.5 87 0.003 39.1 9.5 35 767-801 238-272 (1139)
402 4a9v_A PHOX; hydrolase, beta-p 33.9 1.3E+02 0.0045 34.4 9.7 61 556-616 476-549 (592)
403 4fhn_B Nucleoporin NUP120; pro 31.5 36 0.0012 42.6 5.1 39 556-594 238-276 (1139)
404 3mez_B Mannose-specific lectin 30.8 2.6E+02 0.0089 24.1 9.5 26 644-672 59-84 (113)
405 3f7f_A Nucleoporin NUP120; nuc 29.0 73 0.0025 37.5 6.7 38 556-595 222-259 (729)
406 2zux_A YESW protein; beta-prop 28.5 7E+02 0.024 28.4 19.4 38 764-801 361-404 (591)
407 4d9s_A UVB-resistance protein 23.7 6.7E+02 0.023 26.5 36.5 231 556-796 68-356 (406)
408 3dzw_A Agglutinin; lectin, man 22.0 3.7E+02 0.013 22.9 10.6 25 727-752 53-77 (109)
409 1b2p_A Protein (lectin); manno 21.4 4.1E+02 0.014 23.1 11.5 92 689-799 27-119 (119)
410 3mez_A Mannose-specific lectin 21.1 1.4E+02 0.0048 25.9 5.6 24 727-750 53-76 (111)
411 2d68_A FOP, FGFR1OP; alpha hel 20.4 94 0.0032 25.8 3.9 32 10-41 19-50 (82)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-42 Score=388.80 Aligned_cols=282 Identities=26% Similarity=0.493 Sum_probs=265.3
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.. ++..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.++ +.++.+++++..+++++.|+.|+
T Consensus 182 ~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 65 4788899999999999999976 6779999999999999999998887643 88899999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCC--------------------CCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271 706 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 764 (835)
Q Consensus 706 IwDl~t~~~i~~l~~h~~~I~sl~fspd--------------------g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~ 764 (835)
+||++++++...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899999 999999999988 78889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|...|.+++|+|++.+|++++.|+.|+|||+.+++++ .+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988866 7789999999999999999999999999999997
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-41 Score=371.01 Aligned_cols=287 Identities=19% Similarity=0.371 Sum_probs=262.7
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
.......+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEE
Q 003271 624 WDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILA 697 (835)
Q Consensus 624 WDl~t~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~ 697 (835)
||+.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+. ..+.+++|+|++..+++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9998754 23567889999999999998753 6789999999999999999888776 34899999999999999
Q ss_pred EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--CCCceEEEEE
Q 003271 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVF 774 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--~~~~V~sv~f 774 (835)
++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999 999999999887 55555442 2347999999
Q ss_pred eCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 775 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 775 spdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999988877 7789999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.9e-41 Score=366.18 Aligned_cols=284 Identities=18% Similarity=0.328 Sum_probs=260.6
Q ss_pred EEEEecCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEECCCe
Q 003271 547 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~ 620 (835)
.++.+.+|.+.|++++|+++ +.+|++|+.|++|+||++.+.+. ...+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 45677899999999999985 67899999999999999987654 4578999999999999999999999999999
Q ss_pred EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEE
Q 003271 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILA 697 (835)
Q Consensus 621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~ 697 (835)
|+|||+.+++. +..+..|...+.+++|+|+++ +|++++.|+.|++||+++++....+.. .+.+++|+|++.+|++
T Consensus 104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp EEEEETTTTEE-EEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999998764 777888999999999999976 677999999999999999988777653 4889999999999999
Q ss_pred EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp 776 (835)
++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|+|||+++. .++..+.+|...|.+++|+|
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP 258 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999 999999999887 67888999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++.+|++++.|+.|+|||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999999999999999999887 6789999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.5e-40 Score=362.34 Aligned_cols=288 Identities=17% Similarity=0.283 Sum_probs=259.8
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
.......+.+|.+.|+|++|+||+++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC-----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEec--CCC
Q 003271 624 WDTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQP--RLG 693 (835)
Q Consensus 624 WDl~t~~-----~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp--~~~ 693 (835)
|++.... .....+..|...|.+++|+|++. .|++++.|++|++||+++++++..+.+ .+.+++|+| ++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9986432 23466778999999999999976 566999999999999999999888764 377888877 467
Q ss_pred EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC--CCceE
Q 003271 694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFH 770 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~--~~~V~ 770 (835)
.|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |++|++||++.. ..+..+..+ ...+.
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGAS 288 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCccccee
Confidence 999999999999999999999999999999999999999999999999 999999999886 455444432 34789
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 771 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+++|+|++.+|++++.|+.|+|||+.+++.+ .+.+|...|++++|+|++++|++|+.||+|+||+
T Consensus 289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999888876 7789999999999999999999999999999997
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.7e-41 Score=373.55 Aligned_cols=289 Identities=17% Similarity=0.341 Sum_probs=259.1
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
.+...+.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--------cCceEEEEe
Q 003271 624 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------SGATQMRFQ 689 (835)
Q Consensus 624 WDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--------~~i~~l~fs 689 (835)
||+.+.. .....+.+|...|.++.|.|++...|++|+.|++|++||+.+++.+..+. ..+.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9987532 12456789999999999999877788899999999999999998887662 347888887
Q ss_pred c-CCCEEEEEEcCCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC
Q 003271 690 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 766 (835)
Q Consensus 690 p-~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~ 766 (835)
+ ++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|++||++++ .++..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 7 77899999999999999998 4577888999999999999999999999999 999999999987 5666554432
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Ee----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 767 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 767 -------~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l----~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
..|.+++|+|++++|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||+|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988876 33 5799999999999999999999999999999
Q ss_pred C
Q 003271 835 K 835 (835)
Q Consensus 835 d 835 (835)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.4e-39 Score=349.16 Aligned_cols=282 Identities=18% Similarity=0.309 Sum_probs=252.2
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
...+++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++++|++|+.|++|+|||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEee---cCceEEEEec-CCCEEEEEEc
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK---SGATQMRFQP-RLGRILAAAI 700 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~---~~i~~l~fsp-~~~~ll~~s~ 700 (835)
+.+++. +..+.+|...|.+++|+|++. ++++|+.|+.|++||++++. ....+. ..+.+++|+| ++..+++++.
T Consensus 84 ~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcE-EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 998764 788899999999999999976 67799999999999998873 444444 4489999999 5688999999
Q ss_pred CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271 701 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp 776 (835)
|+.|++||+++......+. +|...+..++|++ ++.+|++++ |+.|++||++++ .++..+.+|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 4668899999986 778999999 999999999987 88999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEE
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 832 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~--~LaSgs~DG~V~ 832 (835)
++++|++++.|+.|+|||+.+++++ .+..|...+.+++|+|++. +|++|+.||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999887 6778899999999999885 688888776543
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-39 Score=353.05 Aligned_cols=290 Identities=26% Similarity=0.453 Sum_probs=249.1
Q ss_pred eEEEEEecCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE---EeccCCCCeEEEEECCCCCEEEEEECCCe
Q 003271 545 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 620 (835)
Q Consensus 545 ~~~i~~l~gH~~-~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~---~l~~h~~~V~sv~fspdg~~Latgs~Dg~ 620 (835)
+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788899988 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEecCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEee---cCceEEEEecCCC
Q 003271 621 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK---SGATQMRFQPRLG 693 (835)
Q Consensus 621 I~IWDl~t~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~---~~~~~~---~~i~~l~fsp~~~ 693 (835)
|+|||+..... ++..+.+|...|.+++|+|+++ +|++|+.|+.|++||+.++. ++..+. ..+.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987653 4678889999999999999976 77799999999999998764 333333 4589999999999
Q ss_pred EEEEEEcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------cce
Q 003271 694 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 758 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~------------~~~ 758 (835)
+|++++.|+.|++||++++. +...+.+|...|.+++|+|++.+|++++ |++|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998875 4578889999999999999999999999 99999999754321 123
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--------EE--EeccCCCCeeEEEEeCCC-CEEEEEE
Q 003271 759 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS 826 (835)
Q Consensus 759 i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--------~~--~l~~h~~~V~~la~spdg-~~LaSgs 826 (835)
+..+.+ |...|.+++|+|++..|++++.|+.|++|+..... .. ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 445554 78899999999999999999999999999987643 11 235899999999999998 4999999
Q ss_pred CCCcEEEeC
Q 003271 827 HDKCVKIWK 835 (835)
Q Consensus 827 ~DG~V~IWd 835 (835)
.||+|+||+
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-39 Score=384.57 Aligned_cols=304 Identities=21% Similarity=0.333 Sum_probs=259.2
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~ 587 (835)
.+++|+.|+.|++|.. .+......+.+|.+.|++++|+|||++||+|+.|++|+|||+.++
T Consensus 162 ~l~s~s~D~~v~lwd~-------------------~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEG-------------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp EEEEEETTSCEEEEET-------------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEEEC-------------------CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 6899999999999932 122446678899999999999999999999999999999999999
Q ss_pred eEEEEec-------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce----------------------------
Q 003271 588 TVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---------------------------- 632 (835)
Q Consensus 588 ~~i~~l~-------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~---------------------------- 632 (835)
+.+..+. +|.+.|.+++|+|++++|++++.|++|+|||+.+++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 9988884 79999999999999999999999999999999865421
Q ss_pred --------------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-------------------
Q 003271 633 --------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------------------- 679 (835)
Q Consensus 633 --------------~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------------------- 679 (835)
...+.+|...|.+++|+|+++ +|++++.|+.|++||+.++++...+
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 234457999999999999976 6779999999999999876442211
Q ss_pred ------------------------------------------------------------------ecCceEEEEecCCC
Q 003271 680 ------------------------------------------------------------------KSGATQMRFQPRLG 693 (835)
Q Consensus 680 ------------------------------------------------------------------~~~i~~l~fsp~~~ 693 (835)
...+.+++|+|++.
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 01245789999999
Q ss_pred EEEEEEcCCcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE--eecCCCc
Q 003271 694 RILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNK 768 (835)
Q Consensus 694 ~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~--l~~~~~~ 768 (835)
++++++.|+.|++||+.++.. +.. .+|...|.+++|+|+|++|++++ |++|++||+.+.. +++.. +..|...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAK 538 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccc
Confidence 999999999999999987653 233 56999999999999999999999 9999999998731 33332 3348999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--E-EEeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 769 FHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 769 V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--~-~~l~~h-~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|.+++|+|++++|++++.|++|+|||+.++. . ..+.+| ...|.+++|+|++. |++++.|++|++||
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 9999999999999999999999999998765 2 356689 89999999999998 99999999999996
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-38 Score=378.69 Aligned_cols=332 Identities=18% Similarity=0.282 Sum_probs=269.4
Q ss_pred ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCc------------------------------ccccccccCCCceeE
Q 003271 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD------------------------------RVGRSAEVGKGFTFT 546 (835)
Q Consensus 497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~------------------------------~~~~~~~~~~g~~~~ 546 (835)
+....+.+...++++|+.|++|++|.......... ..+.++.+..+ .
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~---~ 138 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---T 138 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---C
T ss_pred eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC---C
Confidence 34455666678999999999999997543211000 00011111111 1
Q ss_pred EEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 547 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
....+.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+.+|...|.+++|+|++++|++++.|++|+|||
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 2345789999999999999987 599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEee-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee------------------
Q 003271 626 TENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------ 680 (835)
Q Consensus 626 l~t~~~~~~~~~-------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------------------ 680 (835)
+.++.. +..+. +|...|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 219 ~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 219 GVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp TTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred CCCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 988764 45553 7999999999999976 67799999999999999887654331
Q ss_pred ----------------------------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE-c------------
Q 003271 681 ----------------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q------------ 719 (835)
Q Consensus 681 ----------------------------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l-~------------ 719 (835)
..+.+++|+|++.+|++++.|+.|++||+.++.+...+ .
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 23788999999999999999999999999876543221 0
Q ss_pred ---------------------------------------------------------------------CCCCCeEEEEE
Q 003271 720 ---------------------------------------------------------------------GHKNQVHSVCW 730 (835)
Q Consensus 720 ---------------------------------------------------------------------~h~~~I~sl~f 730 (835)
.|...+.+++|
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~ 456 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL 456 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence 02345778999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC-CcEEE---ecc
Q 003271 731 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSA 805 (835)
Q Consensus 731 spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~-~~~~~---l~~ 805 (835)
+|+|++|++++ |+.|++||+.+... ..+.. ..|...|.+++|+|++++|++++.|++|++||+.+ +++.. ...
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~ 534 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 534 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred eCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence 99999999999 99999999987521 22333 67899999999999999999999999999999987 55442 234
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 806 HDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 806 h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|...|.+++|+||+++||+|+.|++|+|||
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 999999999999999999999999999996
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.2e-38 Score=344.19 Aligned_cols=286 Identities=19% Similarity=0.349 Sum_probs=249.8
Q ss_pred CceeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003271 542 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (835)
Q Consensus 542 g~~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~i~~l~~h~~~V~sv~fspdg~~Latg 615 (835)
...+.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...|.+++|+|++++|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34566778899999999999999965 8999999999999999863 34577889999999999999999999999
Q ss_pred ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecC-
Q 003271 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPR- 691 (835)
Q Consensus 616 s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~- 691 (835)
+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. ++++|+.|+.|++||++. .++..+. ..+.+++|.|.
T Consensus 84 s~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~ 160 (319)
T 3frx_A 84 SWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNE 160 (319)
T ss_dssp ETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-
T ss_pred eCCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCC
Confidence 999999999999876 4788899999999999999976 777999999999999975 4444443 34788999885
Q ss_pred -----CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC
Q 003271 692 -----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 765 (835)
Q Consensus 692 -----~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~ 765 (835)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|+|||+.++ .++..+..
T Consensus 161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~- 236 (319)
T 3frx_A 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA- 236 (319)
T ss_dssp -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-
T ss_pred CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-
Confidence 34899999999999999999999999999999999999999999999999 999999999987 67777765
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-e--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 766 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 766 ~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l--------~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
...|.+++|+|++.+|++++. +.|++|++.....+. + ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 468999999999998877765 469999998877652 2 23567799999999999999999999999996
No 11
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.2e-38 Score=341.15 Aligned_cols=286 Identities=24% Similarity=0.459 Sum_probs=257.5
Q ss_pred eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW 624 (835)
+.....+.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|+||
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d 701 (835)
|+.+++ .+..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+. ..+.+++|+|++..+++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999876 4788899999999999999976 77799999999999999998887775 348899999999999999999
Q ss_pred CcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE---EEEEeC
Q 003271 702 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP 776 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~---sv~fsp 776 (835)
+.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||++++ +++..+..|...+. .....+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998887764 4667899999999999999999 999999999987 77777877765432 223346
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs--~DG~V~IWd 835 (835)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999887 7789999999999999999999997 699999995
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-38 Score=354.17 Aligned_cols=280 Identities=28% Similarity=0.458 Sum_probs=248.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC------------------CeEEEEECCCCCEEEE
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 614 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~------------------~V~sv~fspdg~~Lat 614 (835)
+|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 78999999999999888765542 4999999999999999
Q ss_pred EECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEec-C
Q 003271 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQP-R 691 (835)
Q Consensus 615 gs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp-~ 691 (835)
|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+. ..+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999865 4778899999999999999976 66799999999999999998877665 4588999999 8
Q ss_pred CCEEEEEEcCCcEEEEECCCCeEEEEE-------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------
Q 003271 692 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 755 (835)
Q Consensus 692 ~~~ll~~s~dg~I~IwDl~t~~~i~~l-------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-------- 755 (835)
+.++++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887776 57899999999999999999999 99999999976421
Q ss_pred -cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeC------CCCEEEEEEC
Q 003271 756 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 827 (835)
Q Consensus 756 -~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~sp------dg~~LaSgs~ 827 (835)
..+...+.+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+|++|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456678889999999999999999999999999999999999877 7789999999999986 6789999999
Q ss_pred CCcEEEeC
Q 003271 828 DKCVKIWK 835 (835)
Q Consensus 828 DG~V~IWd 835 (835)
||+|+|||
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-37 Score=342.61 Aligned_cols=285 Identities=19% Similarity=0.361 Sum_probs=242.5
Q ss_pred eeEEEEEecCCCCCEEEEEE-----eC-CCCEEEEEeCCCeEEEEEcCC-------CeEEEEeccCCCCeEEEEECCCCC
Q 003271 544 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 610 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~f-----Sp-dg~~Lasgs~Dg~I~VWd~~t-------~~~i~~l~~h~~~V~sv~fspdg~ 610 (835)
.+.....+.+|.+.|++++| ++ |+++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 44567789999999999999 76 999999999999999999874 356778899999999999999999
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-----eecCceE
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKSGATQ 685 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-----~~~~i~~ 685 (835)
+|++|+.|++|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+........ ....+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 99999999999999999876 4788899999999999999976 667899999999999984433222 2234889
Q ss_pred EEEecCC----------CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271 686 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 686 l~fsp~~----------~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~ 754 (835)
++|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++ |+.|++||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999987 6899999999999999 45677778889999999999999999999999 9999999995542
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE---Eec-----------cCCCCeeEEEEeCCCC
Q 003271 755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 820 (835)
Q Consensus 755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l~-----------~h~~~V~~la~spdg~ 820 (835)
.....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 --~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 --YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp --SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred --ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 223333 2456799999999998665 556888999999876532 222 6888999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 003271 821 MVASASHDKCVKIWK 835 (835)
Q Consensus 821 ~LaSgs~DG~V~IWd 835 (835)
+|++|+.||.|++|+
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-37 Score=362.95 Aligned_cols=306 Identities=27% Similarity=0.454 Sum_probs=268.9
Q ss_pred ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (835)
Q Consensus 500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (835)
..+......+++++.|+.+++|... + ..+..+.+|...|++++|+|++++|++++.|+.|
T Consensus 268 v~~~~d~~~l~~~~~d~~i~~w~~~-----------------~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 268 VAFRPDGQTIASASDDKTVKLWNRN-----------------G---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETT-----------------S---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEcCCCCEEEEEeCCCEEEEEeCC-----------------C---cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence 3445556789999999999999421 1 2345678999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg 659 (835)
++||... ..+..+.+|...|.+++|+|++++|++++.|+.|++||... . .+..+.+|...|.+++|+|+++ +|+++
T Consensus 328 ~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~-~~~~~~~~~~~v~~~~~s~dg~-~l~~~ 403 (577)
T 2ymu_A 328 KLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQ-TIASA 403 (577)
T ss_dssp EEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-C-EEEEEECCSSCEEEEEECTTSS-CEEEE
T ss_pred EEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-C-EEEEecCCCCCeEEEEECCCCC-EEEEE
Confidence 9999865 45667889999999999999999999999999999999653 3 4788889999999999999987 56688
Q ss_pred eCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 660 DNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
+.|+.|++||.. ++.+..+. ..+.+++|+|++..+++++.|+.|++||. +++.+..+.+|...|.+++|+|++++
T Consensus 404 ~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 404 SDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp ETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred eCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence 999999999964 55555554 45889999999999999999999999996 56778888899999999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEE
Q 003271 737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 815 (835)
Q Consensus 737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~ 815 (835)
|++++ |+.|++||.. + +++..+.+|...|++++|+|++++|++++.|+.|+|||.....+..+.+|.+.|++++|
T Consensus 482 las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~f 557 (577)
T 2ymu_A 482 IASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 557 (577)
T ss_dssp EEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEE
T ss_pred EEEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEE
Confidence 99999 9999999953 3 68888999999999999999999999999999999999755444588899999999999
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003271 816 STVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 816 spdg~~LaSgs~DG~V~IWd 835 (835)
+||+++|+|++.|++|+|||
T Consensus 558 s~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 558 SPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999998
No 15
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-38 Score=351.69 Aligned_cols=279 Identities=13% Similarity=0.158 Sum_probs=235.8
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEEcCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q 003271 552 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~~Lasgs~------Dg~I~VWd~~t~~~i----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I 621 (835)
..|...|++++|+|||++||+|+. |+.|++|+..++... ....+|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 788999998776543 33356889999999999975 5677899999
Q ss_pred EEEecCCCCce---eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCC-E
Q 003271 622 RVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLG-R 694 (835)
Q Consensus 622 ~IWDl~t~~~~---~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~-~ 694 (835)
+|||+.+++.. .....+|...|.+++|+|+++ +|++|+.|+.|++||+++++++..+.. .+.+++|++++. .
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 99999876532 134457999999999999976 677999999999999999999888764 488999999875 6
Q ss_pred EEEEEcCCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 695 ILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~i~~l--~~h~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
+++++.|+.|++||++++++...+ ..|...+.+++|+|+ +.+|++++ |+.|++||++++ .++..+..|...|.
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNIT 273 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEE
Confidence 888999999999999998776554 346778999999997 46788888 999999999987 77888999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003271 771 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 835 (835)
Q Consensus 771 sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~IWd 835 (835)
+++|+|++ ++|++++.|++|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99999987 578899999999999999999998889999999999998 789999999999999996
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=348.68 Aligned_cols=277 Identities=15% Similarity=0.220 Sum_probs=234.4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-----------eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I 621 (835)
.|...|.+++|+|||++|++++ |+++++||.... ........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5667799999999999999887 778888863210 1111122356789999999985 78899999999
Q ss_pred EEEecCCCCcee---EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCC-E
Q 003271 622 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLG-R 694 (835)
Q Consensus 622 ~IWDl~t~~~~~---~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~-~ 694 (835)
+|||+.+++... ....+|...|.+++|+|+++ +|++|+.|+.|++||+++++++..+.+ .+.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 33558999999999999976 677999999999999999999988764 489999999985 6
Q ss_pred EEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 695 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
+++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|+|||++++ +++..+.+|...|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998887764 35667999999985 57888888 999999999988 78889999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003271 771 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 835 (835)
Q Consensus 771 sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs~DG~V~IWd 835 (835)
+++|+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578999999999999999999999999999999999999986 678999999999995
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=340.27 Aligned_cols=287 Identities=21% Similarity=0.337 Sum_probs=235.9
Q ss_pred eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC--eEEEEe-cc-CCCCeEEEEECCCCCEEEEEECCCe
Q 003271 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 620 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~i~~l-~~-h~~~V~sv~fspdg~~Latgs~Dg~ 620 (835)
+..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .+ |...|.+++|+|++.+|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3467788999999999999988 9999999999999999874 555666 44 9999999999999999999999999
Q ss_pred EEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCceEEE
Q 003271 621 VRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGATQMR 687 (835)
Q Consensus 621 I~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i~~l~ 687 (835)
|+|||+.... ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. +++..+. ..+.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 9999986421 24567889999999999999976 7779999999999999432 4455544 4589999
Q ss_pred EecCCCEEEEEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCc-----c
Q 003271 688 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 757 (835)
Q Consensus 688 fsp~~~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspd--g~~Lasgs-Dg~I~IwDl~t~~~~-----~ 757 (835)
|+|++..|++++.|+.|++||+.++ +++..+.+|...|.+++|+|+ +.+|++++ |++|++||+...... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 77899988 999999999764211 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE--E--EeccCCC-CeeEEEEeC--CCCEEEEEECCC
Q 003271 758 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L--TLSAHDK-LVSSLAAST--VNGMVASASHDK 829 (835)
Q Consensus 758 ~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~--~--~l~~h~~-~V~~la~sp--dg~~LaSgs~DG 829 (835)
+...+.. |...|.+++|++++ +|++++.|+.|+|||..+++. . ....|.. .|.+++|+| ++.+|++|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 88899999999765 799999999999999988742 3 2357877 899999999 688999999999
Q ss_pred cEEEeC
Q 003271 830 CVKIWK 835 (835)
Q Consensus 830 ~V~IWd 835 (835)
+|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-37 Score=333.82 Aligned_cols=283 Identities=17% Similarity=0.249 Sum_probs=254.5
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
.....+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeee-----------Eee---c--Cce
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAG-----------VFK---S--GAT 684 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~-----------~~~---~--~i~ 684 (835)
+.+++. +..+. +...|.+++|+|++. ++++++.+ +.|++||+....... .+. . .+.
T Consensus 103 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 103 VSNGQC-VATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTTCCE-EEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCCCcE-EEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 998764 55555 889999999999987 55567777 999999997654221 111 1 688
Q ss_pred EEEEecCCCEEEEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe
Q 003271 685 QMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 762 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l 762 (835)
+++|+|++..+++++.|+.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~ 256 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKY 256 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeee
Confidence 999999999999999999999999999 788889999999999999999999999999 999999999987 566666
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 763 SCTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 763 ~~~~~~V~sv~fspdg~~L~sgs~dg--------------~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
. +...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.
T Consensus 257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 335 (369)
T 3zwl_B 257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335 (369)
T ss_dssp E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence 5 678899999999999999999988 8999999999887 67789999999999999999999999
Q ss_pred CCcEEEeC
Q 003271 828 DKCVKIWK 835 (835)
Q Consensus 828 DG~V~IWd 835 (835)
||.|+|||
T Consensus 336 dg~v~iw~ 343 (369)
T 3zwl_B 336 DGFIRLHH 343 (369)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEE
Confidence 99999996
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=334.20 Aligned_cols=270 Identities=20% Similarity=0.286 Sum_probs=246.7
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
...++++|+.|+.|++|.... ........+.+|...|.+++|++++.++++++.|++|+|||+
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~-----------------~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRD-----------------ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp --CEEEEEETTSCEEEEEEET-----------------TEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCCEEEEECCC-----------------CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 346899999999999994321 122345568899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
.+++.+..+..|...+.+++|+|++++|++++.|+.|++||+.++.. ...+..|...|.+++|+|+++ +|++|+.|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~ 187 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGI 187 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCe
Confidence 99999999999999999999999999999999999999999998764 667788899999999999986 6779999999
Q ss_pred EEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271 665 IRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs 741 (835)
|++||+++++.+..+.. .+.+++|+|++.+|++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|++++
T Consensus 188 i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 99999999999887764 489999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 742 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 742 -Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
|+.|+|||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus 268 ~D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 268 SDKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999987 8899999999999999999999999999999999999963
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-37 Score=349.76 Aligned_cols=266 Identities=24% Similarity=0.461 Sum_probs=243.7
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
.++++|+.|+.|++|..... .....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 68999999999999954332 12456789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|...|.++.|++++. ++++|+.|+.|+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVR 259 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999876 4788999999999999999976 778999999999
Q ss_pred EEECCCCeeeeEeec---CceEEEEecC--------------------CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271 667 YWSINNGSCAGVFKS---GATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 667 iwDl~s~~~~~~~~~---~i~~l~fsp~--------------------~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~ 723 (835)
+||+.++++...+.. .+.+++|+|+ +.++++++.|+.|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 999999988877653 4889999996 56899999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
.|.+++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+||+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999 999999999887 6788889999999999999999999999999999999863
No 21
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.5e-36 Score=326.61 Aligned_cols=285 Identities=19% Similarity=0.340 Sum_probs=246.1
Q ss_pred eeEEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCC-----eEEEEeccCCCCeEEEEECCCCCEEEEEEC
Q 003271 544 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~-----~~i~~l~~h~~~V~sv~fspdg~~Latgs~ 617 (835)
.+....+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+. .....+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 44556689999999999999997 689999999999999998754 356788999999999999999999999999
Q ss_pred CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEecCC-
Q 003271 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQPRL- 692 (835)
Q Consensus 618 Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fsp~~- 692 (835)
|+.|++|+...... ......+...+..+.+++++. ++++++.|+.+++||+......... ...+..++|++++
T Consensus 107 d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccce-eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 99999999997654 666777888899999999876 5668999999999999876554332 2447788888765
Q ss_pred -CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 693 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 693 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
..+++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++ |+.|++||+++. ..+..+.. ...|.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 5678889999999999999999999999999999999999999999999 999999999987 66666664 56899
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE----------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 771 SCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~----------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+++|+|++. +++++.|+.|+|||++++..+ ....|...|++++|+|++++|++|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999876 667778999999999987655 2346889999999999999999999999999997
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-36 Score=327.81 Aligned_cols=278 Identities=18% Similarity=0.253 Sum_probs=249.5
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE---EEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i---~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
..+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+ ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 348999999999999999999999 999999999876432 233 37999999999999999999999999999999
Q ss_pred cCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC
Q 003271 626 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 626 l~t~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d 701 (835)
+.++.. ....+..|...|.+++|+|+++ ++++++.|+.|++||+++++.+..+. ..+.+++|+|++..+++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 998763 3566788999999999999876 66788899999999999998887775 448899999999999999999
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~ 780 (835)
+.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+.+. . ...+..|...|.+++|+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---D-KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---C-EEEECCCSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---C-eEEEcCCccceeEEEECCCCCE
Confidence 999999999999888776 788999999999999999999 999999999886 2 3467788999999999999999
Q ss_pred EEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 781 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 781 L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|++||
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999887778999999999999999999999999999996
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-36 Score=353.08 Aligned_cols=306 Identities=26% Similarity=0.437 Sum_probs=270.2
Q ss_pred ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (835)
Q Consensus 500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (835)
..+.....++++++.|+.|++|... ...+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus 227 ~~~s~dg~~l~~~~~d~~i~~w~~~--------------------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 227 VAFSPDGQTIASASDDKTVKLWNRN--------------------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT--------------------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCC--------------------CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 3344455788999999999999321 12456778999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg 659 (835)
++||. +++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+... .+..+.+|...|.+++|+|++. +++++
T Consensus 287 ~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~ 362 (577)
T 2ymu_A 287 KLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASA 362 (577)
T ss_dssp EEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred EEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEE
Confidence 99996 46778889999999999999999999999999999999998754 3677889999999999999987 66789
Q ss_pred eCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 660 DNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
+.|+.|++||.. ++.+..+. ..+.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++
T Consensus 363 ~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~ 440 (577)
T 2ymu_A 363 SDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQT 440 (577)
T ss_dssp ETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred eCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCE
Confidence 999999999964 55555554 45889999999999999999999999996 56778888999999999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEE
Q 003271 737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 815 (835)
Q Consensus 737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~ 815 (835)
|++++ |+.|++||+.. ..+..+..|...|.+++|+|++++|++++.|+.|+|||........+.+|...|++++|
T Consensus 441 l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~ 516 (577)
T 2ymu_A 441 IASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 516 (577)
T ss_dssp EEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEE
T ss_pred EEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEE
Confidence 99999 99999999643 57788899999999999999999999999999999999755444588899999999999
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003271 816 STVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 816 spdg~~LaSgs~DG~V~IWd 835 (835)
+|++++||+++.||.|+|||
T Consensus 517 s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 517 SPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CTTSSCEEEEETTSEEEEEC
T ss_pred cCCCCEEEEEECcCEEEEEe
Confidence 99999999999999999997
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-37 Score=340.51 Aligned_cols=308 Identities=13% Similarity=0.173 Sum_probs=264.5
Q ss_pred c-EEEeccCCCCEEEeec----CCCCCCCcccccccccCCCceeEEEEE----------ecCCCCCEEEEEEeCCCCEEE
Q 003271 507 R-FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSPDGKLLA 571 (835)
Q Consensus 507 ~-~l~tGs~D~~i~~~ls----~~~~~~~~~~~~~~~~~~g~~~~~i~~----------l~gH~~~V~sl~fSpdg~~La 571 (835)
. ++++|+.|+.|++|.. ...... +.+..... ..+|.+.|++++|+|++++|+
T Consensus 58 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 58 ESILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp TTEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred CcEEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 5 9999999999999955 222100 01111222 223788999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC---------
Q 003271 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--------- 642 (835)
Q Consensus 572 sgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~--------- 642 (835)
+|+.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++.. +..+..+...
T Consensus 125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENH 202 (425)
T ss_dssp EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC------------
T ss_pred EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeeccc
Confidence 999999999999 67888899999999999999999999999999999999999998764 6666666666
Q ss_pred ------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271 643 ------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQV 713 (835)
Q Consensus 643 ------V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~ 713 (835)
|.+++|++++ .+++++.|+.|++||+.+++.+..+. ..+.+++|+|++..+++++.|+.|++||+++++
T Consensus 203 ~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 280 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN 280 (425)
T ss_dssp ---CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred cCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 9999999874 46788899999999999988776664 458999999999999999999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271 714 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 792 (835)
Q Consensus 714 ~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I 792 (835)
.+..+..|...|.+++|+|++ +|++++ |+.|++||++++ ..+..+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 281 SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 999999999999999999999 888888 999999999887 788888889999999999999999999999999999
Q ss_pred EEcCCCc--------------------EE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 793 WNMTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 793 wDl~~~~--------------------~~-~l~~h~~--~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
||+.+++ .+ .+..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred EECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 9998877 55 6778866 999999999999999999999999996
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-38 Score=351.38 Aligned_cols=309 Identities=17% Similarity=0.227 Sum_probs=264.9
Q ss_pred cEEEec----------cCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC
Q 003271 507 RFVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (835)
Q Consensus 507 ~~l~tG----------s~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D 576 (835)
.++++| +.|+.|++|........ ..+.. ..|...|++++|+|++++|++|+.|
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESS
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCCeEEEEccC
Confidence 488888 88999999954332110 01111 2588899999999999999999999
Q ss_pred CeEEEEEcCC----CeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCC------ce--eEEeecCCCCe
Q 003271 577 KKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTV 643 (835)
Q Consensus 577 g~I~VWd~~t----~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~------~~--~~~~~~h~~~V 643 (835)
|.|+|||+.+ .+.+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+.. .. ...+..|...|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999999987 4688899999999999999998 8999999999999999999875 22 22346799999
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCceEEEEecCC-CEEEEEEcCC---cEEEEECC
Q 003271 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGATQMRFQPRL-GRILAAAIEN---YISILDVE 710 (835)
Q Consensus 644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~~-~~ll~~s~dg---~I~IwDl~ 710 (835)
.+++|+|++..++++++.|+.|++||+++++.+..+. ..+.+++|+|++ ..+++++.|+ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 9999999977789999999999999999998887764 348899999997 5888888888 99999999
Q ss_pred CC-eEEEEEc-CCCCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEE
Q 003271 711 TQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIG 785 (835)
Q Consensus 711 t~-~~i~~l~-~h~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs 785 (835)
++ .++..+. +|...|.+++|+| ++.+|++++ |+.|++||++++ .++..+..|...|.+++|+|++ .+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 86 6677777 8999999999999 899999999 999999999987 7888899999999999999999 8999999
Q ss_pred cCCeEEEEEcCCCcEE-Ee-----------------------------------ccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271 786 CYETLELWNMTENKTL-TL-----------------------------------SAHDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 786 ~dg~I~IwDl~~~~~~-~l-----------------------------------~~h~~~V~~la~spdg~~LaSgs~DG 829 (835)
.|+.|+|||+.+.... .. ..|...|.+++|+|+|++|++++.||
T Consensus 326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 9999999999876532 10 01667888999999999999999999
Q ss_pred cEEEeC
Q 003271 830 CVKIWK 835 (835)
Q Consensus 830 ~V~IWd 835 (835)
.|+|||
T Consensus 406 ~v~~w~ 411 (416)
T 2pm9_A 406 GVSITN 411 (416)
T ss_dssp CBCCBC
T ss_pred eEEEEE
Confidence 999997
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.5e-36 Score=337.78 Aligned_cols=285 Identities=14% Similarity=0.155 Sum_probs=253.9
Q ss_pred eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe------EEEEeccCCCCeEEEEECCC----C---CE
Q 003271 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 611 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~------~i~~l~~h~~~V~sv~fspd----g---~~ 611 (835)
......+.+|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677889999999999998 799999999999999999887 77888899999999999999 9 99
Q ss_pred EEEEECCCeEEEEecCCCCc----eeEEeecC-----CCCeEEEEEc----CCCCcEEEEEeCCCcEEEEECCC------
Q 003271 612 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 672 (835)
Q Consensus 612 Latgs~Dg~I~IWDl~t~~~----~~~~~~~h-----~~~V~sl~fs----p~g~~ll~sgs~Dg~I~iwDl~s------ 672 (835)
|++++.|+.|++||+.++.. .+..+..| ...|.+++|+ |++..+|++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987653 15677778 5899999999 98775377999999999999998
Q ss_pred Ceeee-----Ee----------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC---C---CCCeEEEEEc
Q 003271 673 GSCAG-----VF----------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 731 (835)
Q Consensus 673 ~~~~~-----~~----------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h---~~~I~sl~fs 731 (835)
++.+. .+ ...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 65554 54 3458999999999 999999999999999999999999998 8 9999999999
Q ss_pred CCCCEEEEEe-C---CeEEEEEcCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 732 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 732 pdg~~Lasgs-D---g~I~IwDl~t~~~~~~i~~l~~-------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
|++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++.+|++++.|+.|+|||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999998 8 89999999987 67888887 899999999999999999999999999999
Q ss_pred cCCCcEE-Eec------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003271 795 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 835 (835)
Q Consensus 795 l~~~~~~-~l~------~h---------------~~~V~~la~spdg----------~~LaSgs~DG~V~IWd 835 (835)
+.+++.+ .+. .| ...|++++|+|++ ++|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999887 555 67 9999999999998 7999999999999996
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.7e-37 Score=337.95 Aligned_cols=242 Identities=17% Similarity=0.271 Sum_probs=210.5
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE----EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~----~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
.|...|.+++|++|+ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999986 78899999999999999876443 3458999999999999999999999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCC-CEEEEEEcCC
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRL-GRILAAAIEN 702 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~-~~ll~~s~dg 702 (835)
++ ++..+.+|...|.+++|++++..+|++|+.|+.|++||++++++...+. ..+.+++|+|++ ..+++++.|+
T Consensus 159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 76 4888999999999999999998899999999999999999998877654 237789999965 5677889999
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~ 780 (835)
.|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++ + +..+.+|...|++++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999886 3 4457889999999999999875
Q ss_pred -EEEEEcCCeEEEEEcCCCcE
Q 003271 781 -LLVIGCYETLELWNMTENKT 800 (835)
Q Consensus 781 -L~sgs~dg~I~IwDl~~~~~ 800 (835)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56889999999999987543
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.9e-36 Score=323.19 Aligned_cols=273 Identities=19% Similarity=0.300 Sum_probs=240.1
Q ss_pred cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (835)
Q Consensus 503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (835)
.+.+.++++|+.|+.|++|..... ..+..+.+|...|.+++|++++++|++|+.|++|+||
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 334479999999999999943221 3466788999999999999999999999999999999
Q ss_pred EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 583 d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
|+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|+|||+.++......+.+|...|.+++|+|.+..+|++|+.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987666778899999999999999766788999999
Q ss_pred CcEEEEECCCCeeeeEee----cCceEEEEec--CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 663 SEIRYWSINNGSCAGVFK----SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 663 g~I~iwDl~s~~~~~~~~----~~i~~l~fsp--~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
+.|++||+.+......+. ..+..+.|.| ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 999999998876655543 3467788876 6679999999999999999999999999999999999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEEcCC
Q 003271 737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTE 797 (835)
Q Consensus 737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl~~ 797 (835)
|++++ |+.|+|||+.+. +++..+..+...+.+++|+|++.. +++++.++.+.+|++.+
T Consensus 243 l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 99999 999999999987 788889999999999999998853 34555566788888764
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.1e-36 Score=338.11 Aligned_cols=310 Identities=15% Similarity=0.220 Sum_probs=258.9
Q ss_pred cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (835)
Q Consensus 501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (835)
.+.....++++|+.|+.+++|....... ...+..| ..+.+..|++++++|++|+.||.|+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIK 122 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCCCEEEEEECCCCEE
Confidence 3444457889999999999995433211 1112234 3455567899999999999999999
Q ss_pred EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
|||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.+++. +..+.+|...|.+++|+|++. +|++++
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 200 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSAS 200 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEE
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEc
Confidence 999999999999899999999999999999999999999999999998764 678889999999999999976 667999
Q ss_pred CCCcEEEEECCCCeeeeEeec---------------------------CceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271 661 NNSEIRYWSINNGSCAGVFKS---------------------------GATQMRFQPRLGRILAAAIENYISILDVETQV 713 (835)
Q Consensus 661 ~Dg~I~iwDl~s~~~~~~~~~---------------------------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~ 713 (835)
.|+.|++||+++++.+..+.. .+.+++|+|++..+++++.|+.|++||+++++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999999998877752 24445567889999999999999999999998
Q ss_pred EEEEEc-CCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003271 714 CRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 789 (835)
Q Consensus 714 ~i~~l~-~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~ 789 (835)
.+..+. .|...|.+++|+|++. +|++++ ||.|++||++++. ..+..+.. +...|.++.+ +++.+|++++.|+.
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTS 357 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCcc
Confidence 777765 4888999999999998 999988 9999999999873 23555655 5666777754 57789999999999
Q ss_pred EEEEEcCCC----------cEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003271 790 LELWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 835 (835)
Q Consensus 790 I~IwDl~~~----------~~~~l~~h~~~V~~la~spdg~---~LaSgs~DG~V~IWd 835 (835)
|++||+... ....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 999998763 2335678899999999999999 788888999999995
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7e-36 Score=328.46 Aligned_cols=280 Identities=15% Similarity=0.191 Sum_probs=246.8
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
+..|.++|++++|+|++++|++|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8889999999999999999999999999999999999987
Q ss_pred CCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEe----ecCceEEEEecCCCEEEEEEc
Q 003271 629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVF----KSGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 629 ~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~----~~~i~~l~fsp~~~~ll~~s~ 700 (835)
+... ...+..|...|.+++|+|++. ++++++.|+.|++||++.+.. ...+ ...+.+++|+|++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 234467899999999999976 677888999999999988762 2222 345899999999999999999
Q ss_pred CCcEEEEEC------------------CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271 701 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 701 dg~I~IwDl------------------~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~ 761 (835)
|+.|++||+ ..++.+..+.+|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999987 78888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC--CcE---------------------------------------
Q 003271 762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 800 (835)
Q Consensus 762 l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~--~~~--------------------------------------- 800 (835)
+..|...|.+++|+|++.+|+++ .|+.|++|++.+ ++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88999999999999999877766 999999999987 431
Q ss_pred EEe-ccCCCCeeEEEEe-CCC---CEEEEEECCCcEEEeC
Q 003271 801 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 835 (835)
Q Consensus 801 ~~l-~~h~~~V~~la~s-pdg---~~LaSgs~DG~V~IWd 835 (835)
..+ .+|...|++++|+ +++ .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 4899999999966 666 8999999999999996
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.3e-35 Score=355.64 Aligned_cols=283 Identities=21% Similarity=0.360 Sum_probs=243.9
Q ss_pred EEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg 619 (835)
.....+++|.+.|+||+|++++ ++|++|+.|++|+||++.+ +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4456788999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------ecCceEEEEecCC-
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------KSGATQMRFQPRL- 692 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~~~i~~l~fsp~~- 692 (835)
+|+|||+.++. ....+.+|...|.+++|+|++. +|++|+.|++|++||+......... ...+.+++|+|++
T Consensus 453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999865 4788899999999999999976 5669999999999998765443322 2348899999986
Q ss_pred -CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 693 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 693 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
..+++++.|+.|++||+++.++...+.+|...|.+++|+|++++|++++ |+.|+|||++++ .++..+.. ...|.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999987 66666554 56799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCc
Q 003271 771 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKC 830 (835)
Q Consensus 771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l~~h-------------------~~~V~~la~spdg~~LaSgs~DG~ 830 (835)
+++|+|++.+|+++ .++.|+|||+.++.++. +..+ ...|++++|+|++++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999866655 56679999999988762 2211 123789999999999999999999
Q ss_pred EEEeC
Q 003271 831 VKIWK 835 (835)
Q Consensus 831 V~IWd 835 (835)
|+|||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.5e-35 Score=317.46 Aligned_cols=273 Identities=17% Similarity=0.274 Sum_probs=238.7
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..++++|+.|+.|++|..... .......+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~--------------~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGD--------------DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEE--------------TTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccEEEEecCCccEEEecCCCC--------------CccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 479999999999999943221 111234577889999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC-----CcEEEEEe
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCD 660 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g-----~~ll~sgs 660 (835)
+++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||+.. .++..+.+|...|.++.|.|.. ..++++++
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999974 3477888999999999999863 33788999
Q ss_pred CCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEE
Q 003271 661 NNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 737 (835)
Q Consensus 661 ~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~L 737 (835)
.|+.|++||+++.+....+. ..+.+++|+|++.+|++++.|+.|++||+.+++++..+.. ...|.+++|+|++.+|
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 99999999999988877665 4589999999999999999999999999999999988874 5689999999999999
Q ss_pred EEEeCCeEEEEEcCCCCCcceEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271 738 ASVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 738 asgsDg~I~IwDl~t~~~~~~i~~l~--------~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~ 798 (835)
+++.++.+++|++... ..+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999888999999875 4444443 24567899999999999999999999999998654
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=310.53 Aligned_cols=278 Identities=15% Similarity=0.234 Sum_probs=246.8
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
.+.....+.+|.+.|++++| +++.+|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 44677889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEec-CCCEEEE
Q 003271 624 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQP-RLGRILA 697 (835)
Q Consensus 624 WDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp-~~~~ll~ 697 (835)
|++.... ..+..+.+|...|.+++|. + .++++++.|+.|++|| .++....+. ..+.++.|.+ +++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987653 3467788899999999994 3 3788999999999999 555555554 4588888888 8899999
Q ss_pred EEcCCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271 698 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 775 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs 775 (835)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 4566677776 899999999999999 66666 999999999987 7888888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 776 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 776 pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 6778999999999999998 66799999999996
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.7e-35 Score=321.79 Aligned_cols=263 Identities=24% Similarity=0.373 Sum_probs=235.5
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
.++++|+.|+.|++|..... ..+..+..|...|.+++|+|++++|++|+.|+.|++|++.+
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp SEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred CEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 68999999999999943222 24566788999999999999999999999999999999986
Q ss_pred C----eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 587 F----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 587 ~----~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
. .....+.+|.+.|.++.|++++ .|++++.|++|++||+.++. .+..+.+|...|.+++|+|++. ++++|+.|
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d 205 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTR-LFVSGACD 205 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred CCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCC-EEEEEeCC
Confidence 5 4667788999999999999876 48999999999999999876 4788889999999999999976 77899999
Q ss_pred CcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCCCEE
Q 003271 663 SEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYL 737 (835)
Q Consensus 663 g~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg~~L 737 (835)
+.|++||++++.++..+. ..+.+++|+|++..|++++.|+.|++||++++..+..+.. +...|.+++|+|+|.+|
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence 999999999998887776 3489999999999999999999999999999988777653 33579999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 738 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
++++ |+.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 286 ~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 286 LAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999 999999999887 67888999999999999999999999999999999997
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=321.80 Aligned_cols=286 Identities=15% Similarity=0.201 Sum_probs=240.9
Q ss_pred EEEecCCCCCEEEEEEeCCCCEE-EEEeC---CCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECCC---CCEEEEEECCC
Q 003271 548 FQLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADR 619 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~L-asgs~---Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fspd---g~~Latgs~Dg 619 (835)
...+.+|.+.|++++|+|++..| ++|+. |+.|+|||+.+++..... .+|...|.+++|+|+ +.+|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34557899999999999999655 55655 899999999998776443 379999999999998 69999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEE------cCCCCcEEEEEeCCCcEEEEECCCCe-eeeEeec-------CceE
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKS-------GATQ 685 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~f------sp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~~-------~i~~ 685 (835)
.|++||+.++...+..+.+|...|.+++| +|++. +|++++.|+.|++||+++++ .+..+.. .+.+
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~ 169 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT 169 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence 99999999887567888999999999966 56655 67799999999999999886 5555532 4667
Q ss_pred EE----EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC---CCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271 686 MR----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGE 757 (835)
Q Consensus 686 l~----fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp---dg~~Lasgs-Dg~I~IwDl~t~~~~~ 757 (835)
++ |++++..+++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++....
T Consensus 170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 248 (357)
T 3i2n_A 170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK 248 (357)
T ss_dssp EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence 77 678999999999999999999999987655 45889999999999 999999999 9999999998764333
Q ss_pred eEE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCCc--------------------EEEeccCCCCeeEEE
Q 003271 758 CIH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------------------TLTLSAHDKLVSSLA 814 (835)
Q Consensus 758 ~i~--~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~~--------------------~~~l~~h~~~V~~la 814 (835)
.+. .+..|...|.+++|+|+++ +|++++.|+.|++||+..+. ...+..|...|++++
T Consensus 249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE
Confidence 222 4458999999999999998 89999999999999997532 236778999999999
Q ss_pred EeCCCCEEE-EEECCCcEEEeC
Q 003271 815 ASTVNGMVA-SASHDKCVKIWK 835 (835)
Q Consensus 815 ~spdg~~La-Sgs~DG~V~IWd 835 (835)
|+|++++|+ +++.||.|+|||
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEE
T ss_pred EcCCCCeEEEEecCCCcEEEEE
Confidence 999999888 899999999996
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.1e-35 Score=325.08 Aligned_cols=284 Identities=16% Similarity=0.228 Sum_probs=235.8
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEec--cCCCCeEEEEECC-CCCEEEEEECCC
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADR 619 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~--~h~~~V~sv~fsp-dg~~Latgs~Dg 619 (835)
.+..+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345677889999999999999999 999999999999999999887776665 6999999999999 789999999999
Q ss_pred eEEEEecCCCCceeEEeec---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCC
Q 003271 620 TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLG 693 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~---h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~ 693 (835)
.|++||+.+. .+..+.. |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+. ..+.+++|+|++.
T Consensus 142 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 142 ATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp EEEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred EEEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence 9999999963 3445544 448899999999976 77799999999999994 56666554 4589999999998
Q ss_pred -EEEEEEcCCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCcceEEEee---
Q 003271 694 -RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS--- 763 (835)
Q Consensus 694 -~ll~~s~dg~I~IwDl~t----~~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--- 763 (835)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 899999999999999997 6677766 5999999999999 999999999 9999999999874332222111
Q ss_pred -cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003271 764 -CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 764 -~~~----------~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~--h~~~V~~la~spdg~~LaSgs~DG 829 (835)
.+. ..+..++|+|++.+ +++.|+.|+|||+.+++.+ .+.+ |...+.+++|+|++.+|++|+ ||
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 111 33444666666665 6678999999999999887 5554 567888889999999999997 99
Q ss_pred cEEEeC
Q 003271 830 CVKIWK 835 (835)
Q Consensus 830 ~V~IWd 835 (835)
.|+|||
T Consensus 374 ~i~iw~ 379 (383)
T 3ei3_B 374 NILIWN 379 (383)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 999996
No 37
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-35 Score=324.67 Aligned_cols=284 Identities=15% Similarity=0.286 Sum_probs=244.0
Q ss_pred EEecCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeEEEEecc-----CCCCeEEEEECCC----CCEEEEE
Q 003271 549 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 615 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-----h~~~V~sv~fspd----g~~Latg 615 (835)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 344589999999999984 45666777778999999998877666643 5678999999998 6799999
Q ss_pred ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------ecCceEEEEe
Q 003271 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------KSGATQMRFQ 689 (835)
Q Consensus 616 s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~~~i~~l~fs 689 (835)
+.||.|+|||+.+++. +..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ ...+.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 9999999999998764 77888999999999999944558889999999999999999888776 2458999999
Q ss_pred cCCCEEEEEEcCCcEEEEECCCCeEEEEE----------------------------cCCCCCeEEEEEcCCCCEEEEEe
Q 003271 690 PRLGRILAAAIENYISILDVETQVCRLKL----------------------------QGHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l----------------------------~~h~~~I~sl~fspdg~~Lasgs 741 (835)
|++..+++++.|+.|++||+++++....+ ..|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 99999999999999999999976544333 3389999999998 77899888
Q ss_pred -CCeEEEEEcCCCCC-----------cceEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEEcCCCcE-----EE
Q 003271 742 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 802 (835)
Q Consensus 742 -Dg~I~IwDl~t~~~-----------~~~i~~l~~~~~~V~sv~fspd--g~~L~sgs~dg~I~IwDl~~~~~-----~~ 802 (835)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987632 1347778889999999999999 99999999999999999998752 25
Q ss_pred eccC--CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 803 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 803 l~~h--~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=322.51 Aligned_cols=276 Identities=17% Similarity=0.263 Sum_probs=244.6
Q ss_pred cCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEc----CCCe------EEEEecc----------CCCCeEEEEECCCCC
Q 003271 552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS 610 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~----~t~~------~i~~l~~----------h~~~V~sv~fspdg~ 610 (835)
..|.+.|++++|+|+++ +||+|+.|+.|+||++ .+++ ....+.. |...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8887 4555544 688999999999999
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---C-----
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---G----- 682 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~----- 682 (835)
+|++++.||.|+|||. ++. .+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.. .
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGA-LLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEET-TSC-EEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEeC-CCC-eeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 9999999999999993 333 4788889999999999999976 666888999999999999988776652 2
Q ss_pred ----------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271 683 ----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 751 (835)
Q Consensus 683 ----------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~ 751 (835)
+.+++|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 778889987 6789999999999999999999889999999999999999999999999 9999999998
Q ss_pred CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271 752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 830 (835)
Q Consensus 752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~ 830 (835)
++ ..+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.
T Consensus 278 ~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 278 NG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 87 6677788899999999999999 9999999999999999999877 66789999999999999999999999999
Q ss_pred EEEeC
Q 003271 831 VKIWK 835 (835)
Q Consensus 831 V~IWd 835 (835)
|+|||
T Consensus 354 i~i~~ 358 (425)
T 1r5m_A 354 VNVYD 358 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.1e-35 Score=326.19 Aligned_cols=282 Identities=15% Similarity=0.253 Sum_probs=226.9
Q ss_pred CceEEEEecCCCCCccccCccccCCCcEEEeccC------CCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCC
Q 003271 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL------DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (835)
Q Consensus 481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~------D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH 554 (835)
....+.|++++ .+|++|+. |+.+++|......... .......+|
T Consensus 44 ~V~~v~fSpDG---------------~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------------~~~~~~~~~ 93 (357)
T 4g56_B 44 QIGAVRYRRDG---------------ALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------------SLCTAGVQT 93 (357)
T ss_dssp EEEEEEECSSS---------------CEEEEEECSSSSSCCEEEEEESSCC---CG---------------GGCSEEEEC
T ss_pred CEEEEEECCCC---------------CEEEEEcCCCCccccCeEEEEECCCCCcce---------------eEecccCCC
Confidence 46677888877 68888887 4556666332221110 111233478
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~ 630 (835)
...|++++|+|++. +++++.||+|+|||+.+++.. ....+|...|++++|+|++++|++|+.|+.|+|||+.++.
T Consensus 94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 88999999999985 456778999999999887654 2345799999999999999999999999999999999876
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCC-CEEEEEEcCCcE
Q 003271 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRL-GRILAAAIENYI 704 (835)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~-~~ll~~s~dg~I 704 (835)
.+..+.+|...|.+++|++++..++++++.|+.|++||+++++....+. ..+.+++|+|++ ..+++++.|+.|
T Consensus 173 -~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 173 -VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp -EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred -EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence 4788899999999999999988888999999999999999988765543 347899999985 567788999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC-CCCEE
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSL 781 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L 781 (835)
++||+++++++..+.+|...|++++|+|++ ++|++++ |++|+|||++++ +++.. .+|...|++++|+| ++.+|
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEE
T ss_pred eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEE
Confidence 999999999999999999999999999987 6788888 999999999887 55544 47899999999998 78999
Q ss_pred EEEEcCCeEEEEEcCCC
Q 003271 782 LVIGCYETLELWNMTEN 798 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~ 798 (835)
++++.|+.|++||+...
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 99999999999998654
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=314.04 Aligned_cols=279 Identities=21% Similarity=0.355 Sum_probs=229.6
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..++++|+.|+.|++|..... ..........+|.+.|.+++|+|++++|++|+.|++|+|||+.
T Consensus 28 g~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 378999999999999943211 1112233447899999999999999999999999999999988
Q ss_pred CC--eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271 586 SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (835)
Q Consensus 586 t~--~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~ 661 (835)
+. +.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+... ++..+.+|...|.+++|+|++. +|++++.
T Consensus 92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~ 170 (345)
T 3fm0_A 92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASY 170 (345)
T ss_dssp CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEET
T ss_pred CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeC
Confidence 76 46788999999999999999999999999999999999987643 3567788999999999999976 6779999
Q ss_pred CCcEEEEECCCCeee--eEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC---------------CeEEEEEcC-
Q 003271 662 NSEIRYWSINNGSCA--GVFK---SGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG- 720 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~--~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t---------------~~~i~~l~~- 720 (835)
|+.|++||++++... ..+. ..+.+++|+|++.+|++++.|+.|++||... ..++..+.+
T Consensus 171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (345)
T 3fm0_A 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250 (345)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence 999999999887533 3443 4589999999999999999999999999632 234555655
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-c-----eEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEE
Q 003271 721 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-E-----CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLEL 792 (835)
Q Consensus 721 h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~-~-----~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~I 792 (835)
|...|.+++|++++.+|++++ |+.|++|+....... . ......+|...|.+++|+|++. +|++++.|+.|++
T Consensus 251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 889999999999999999998 999999998765321 1 1223457899999999999984 8999999999999
Q ss_pred EEcCCCcEE
Q 003271 793 WNMTENKTL 801 (835)
Q Consensus 793 wDl~~~~~~ 801 (835)
|++.+++..
T Consensus 331 W~~~~~~~~ 339 (345)
T 3fm0_A 331 WKYQRPEGL 339 (345)
T ss_dssp EEECC----
T ss_pred EEecCCCCc
Confidence 999887754
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.2e-34 Score=317.54 Aligned_cols=265 Identities=22% Similarity=0.354 Sum_probs=234.8
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
.++++|+.|+.|++|..... .....+..|...|.+++|+|+|.+|++|+.|+.|++|++..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 68999999999999943221 23455678899999999999999999999999999999864
Q ss_pred C------eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC-CcEEEEE
Q 003271 587 F------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSC 659 (835)
Q Consensus 587 ~------~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sg 659 (835)
. .....+..|...|.+++|+|++..|++++.|++|++||+.+++ .+..+.+|...|.+++|+|+. ..+|++|
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 3 2345667899999999999999999999999999999999876 478889999999999999853 3588899
Q ss_pred eCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC--CCCeEEEEEcCCC
Q 003271 660 DNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSG 734 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h--~~~I~sl~fspdg 734 (835)
+.||.|++||+++++++..+.. .+.+++|+|++..|++++.|+.|++||++....+..+..+ ...+.+++|+|++
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 9999999999999998887753 4899999999999999999999999999998887776543 3578999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 735 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 735 ~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
.+|++++ |+.|+|||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.|+||+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999 999999999887 67888899999999999999999999999999999996
No 42
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=6.9e-34 Score=312.69 Aligned_cols=277 Identities=15% Similarity=0.226 Sum_probs=229.6
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
...++++|+.|++|++|........ +........+.+|...|++++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------------~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------------GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------------SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------------cccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 4579999999999999955432111 1123456778999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe---ecCCCCeEEEEEcCCCC--------
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-------- 653 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~---~~h~~~V~sl~fsp~g~-------- 653 (835)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.... .... ..|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 9999999999999999999999999999999999999999998432 2222 26889999999999863
Q ss_pred -cEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEE
Q 003271 654 -DLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV 728 (835)
Q Consensus 654 -~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl 728 (835)
.++++++.|+.|++||. .......+. ..+.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus 184 ~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence 47889999999999995 455555544 4589999999999999999999999999954 33334443 55679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 729 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 729 ~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-----------~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
+|+|++.+|+++.|+.|++||+.+.... .+..+. +|...|.+++|+|++++|++|+.||.|++|++.+
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKA-PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSC-SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCC-ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 9999999998888999999999876432 222332 5778899999999999999999999999999865
Q ss_pred C
Q 003271 798 N 798 (835)
Q Consensus 798 ~ 798 (835)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-33 Score=303.52 Aligned_cols=268 Identities=24% Similarity=0.417 Sum_probs=237.7
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
...++++|+.|+.|++|...+. .....+.+|...|.+++|+|++++|++|+.|+.|+|||+
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 3478999999999999943222 234567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++. ++++++.|+.
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~ 172 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGL 172 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999876 4778889999999999999976 6779999999
Q ss_pred EEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEE---EEEcCCCCEE
Q 003271 665 IRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYL 737 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~s---l~fspdg~~L 737 (835)
|++||+++++.+..+. ..+..++|+|++.++++++.|+.|++||+++++++..+.+|...+.+ ....+++.+|
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 9999999998877653 34788999999999999999999999999999999999888765433 2334678899
Q ss_pred EEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEEcC
Q 003271 738 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 796 (835)
Q Consensus 738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs--~dg~I~IwDl~ 796 (835)
++++ |+.|++||+.++ ..+..+.+|...|.+++|+|++..|++++ .|+.|++|+.+
T Consensus 253 ~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9998 999999999887 78889999999999999999999999987 58999999864
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-36 Score=330.21 Aligned_cols=283 Identities=15% Similarity=0.191 Sum_probs=228.2
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34457789999999999999999999999999999988 7788899999999999999999999999999999999999
Q ss_pred CCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEee----cCceEEEEecCCCEEEEE
Q 003271 628 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK----SGATQMRFQPRLGRILAA 698 (835)
Q Consensus 628 t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~----~~i~~l~fsp~~~~ll~~ 698 (835)
++. .....+..|...|.+++|+|+++ +|++++.|+.|++||+++++. ...+. ..+.+++|+|++.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 865 23567778999999999999976 666888999999999998763 44443 458999999999999999
Q ss_pred EcCCcEEEEECC------------------CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ce
Q 003271 699 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 758 (835)
Q Consensus 699 s~dg~I~IwDl~------------------t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~-~~ 758 (835)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 8999999999999999999999 999999999987421 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc---------------------------------------
Q 003271 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------------------------------- 799 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--------------------------------------- 799 (835)
+..+..|...|.+++|+|++.+|++++.++.+ +|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988877655555 77664211
Q ss_pred EE--------------EeccCCCCeeEEEEeCCC-C---EEEEEECCCcEEEeC
Q 003271 800 TL--------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 835 (835)
Q Consensus 800 ~~--------------~l~~h~~~V~~la~spdg-~---~LaSgs~DG~V~IWd 835 (835)
.. ....|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 011399999999976643 3 699999999999997
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.6e-33 Score=316.77 Aligned_cols=297 Identities=17% Similarity=0.261 Sum_probs=256.6
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
.++++|+.|+.|++|..... ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.+
T Consensus 133 ~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~ 192 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK 192 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence 58999999999999943222 3567788999999999999988 999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEC--CCCCEEEEEECCCeEEEEecCCCCce----------------------eEEeecCCCC
Q 003271 587 FTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTT 642 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fs--pdg~~Latgs~Dg~I~IWDl~t~~~~----------------------~~~~~~h~~~ 642 (835)
++.+..+.+|...|.+++|+ +++.+|++++.|+.|++||+.+.... +..+.+|...
T Consensus 193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 99999999999999999998 57889999999999999999876532 4567789999
Q ss_pred eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc
Q 003271 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 719 (835)
Q Consensus 643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~ 719 (835)
|.++..+ +. ++++++.|+.|++||+.+++++..+. ..+.+++|+|++..+++++.|+.|++||+++++++..+.
T Consensus 273 v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 273 VRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 9988544 33 77899999999999999999988776 348899999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271 720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~ 798 (835)
+|...|.+++|+ +.+|++++ |+.|++||+.+. ...... .+...+..++|++++.+|++++ |+.|++||+.++
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC---ceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 999999999997 57888888 999999999986 333333 3567788889999999888888 899999999999
Q ss_pred cEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 799 KTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 799 ~~~~--l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
+.+. ...|...|.+++|+ ...++++++.||.+.+|
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 9884 57889999999998 44566667778766655
No 46
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.8e-33 Score=317.27 Aligned_cols=294 Identities=20% Similarity=0.365 Sum_probs=259.5
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++|+ +.+|++|+.||.|++||+.
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 368999999999999944322 3456778999999999998 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
+++.+..+.+|...|.+++|+ +..|++|+.||.|++||+.+++ .+..+.+|...|.+++| ++. ++++++.||.|
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i 261 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMV 261 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEE
Confidence 999999999999999999995 5689999999999999999876 47788899999999999 333 67789999999
Q ss_pred EEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 666 RYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
++||+++++++..+.. .+.++.| ++..+++++.|+.|++||+++++++..+.+|...+.++.++ +.+|++++
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 9999999998888763 3677777 78899999999999999999999999999999999988874 66888888
Q ss_pred CCeEEEEEcCCCCCcceEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-e-----ccCCCCeeE
Q 003271 742 DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-----SAHDKLVSS 812 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l~~---~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l-----~~h~~~V~~ 812 (835)
|+.|++||++++ .++..+.. |...|.+++|+ +.+|++++.||.|++||+.+++.+. + ..|.+.|++
T Consensus 338 dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 338 DSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp TSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred CCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 999999999887 67777765 78889999995 5799999999999999999998873 3 378899999
Q ss_pred EEEeCCCCEEEEEECCCc----EEEeC
Q 003271 813 LAASTVNGMVASASHDKC----VKIWK 835 (835)
Q Consensus 813 la~spdg~~LaSgs~DG~----V~IWd 835 (835)
++|+|++.+|++|+.||+ |.|||
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999999999999998 99996
No 47
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.2e-34 Score=362.64 Aligned_cols=311 Identities=21% Similarity=0.376 Sum_probs=270.2
Q ss_pred CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (835)
Q Consensus 504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (835)
....++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++||+|+.|+.|+|||
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34479999999999999944322 34667789999999999999999999999999999999
Q ss_pred cCCCeEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271 584 TESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (835)
Q Consensus 584 ~~t~~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~ 661 (835)
+.+++.+..+.+|...|.+++|+| ++.++++|+.|+.|++||+.++. ++..+.+|...|.+++|+|++. ++++++.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~ 763 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSA 763 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEES
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEEC
Confidence 999999999999999999999999 56689999999999999999876 4788889999999999999976 7779999
Q ss_pred CCcEEEEECCCCeeeeEe----------------------------------------------------------ecCc
Q 003271 662 NSEIRYWSINNGSCAGVF----------------------------------------------------------KSGA 683 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~~~~----------------------------------------------------------~~~i 683 (835)
||.|++||+.+++....+ ...+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 999999999876543322 1236
Q ss_pred eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc------
Q 003271 684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ 756 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~------ 756 (835)
.+++|+|++..+++++.++.|++||+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+....
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 7889999999999999999999999999999999999999999999999999999999 999999997532000
Q ss_pred --------------------ceEEE--------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC
Q 003271 757 --------------------ECIHE--------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD 807 (835)
Q Consensus 757 --------------------~~i~~--------l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~ 807 (835)
..+.. ...+...+.+++|+|++.++++++.+|.|++||+.+++.. .+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 00000 1123467899999999999999999999999999998877 677899
Q ss_pred CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 808 KLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 808 ~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..|++++|+|++++|++++.||.|++||
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 9999999999999999999999999996
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=348.82 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=159.9
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
...++++|+.|+.|++|..... ... ....|...|.+++|+| |++|++++.|++|+|||+
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~-------------------~~~-~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQV-------------------EVV-IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTC-------------------EEE-EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-------------------EEE-EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence 3479999999999999932111 111 2235788999999999 889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee----------EEeecCCCCeEEEEEcCCCCc
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKED 654 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~----------~~~~~h~~~V~sl~fsp~g~~ 654 (835)
.+++.+..+. |...|++++|+|++.+|++|+.||.|++||+.++.... ..+.+|...|.+++|+|++..
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 9999998885 77899999999999999999999999999999765321 234678899999999998666
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEee---------------------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271 655 LLCSCDNNSEIRYWSINNGSCAGVFK---------------------SGATQMRFQPRLGRILAAAIENYISILDVETQV 713 (835)
Q Consensus 655 ll~sgs~Dg~I~iwDl~s~~~~~~~~---------------------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~ 713 (835)
++++|+.|+.| +||+++++++..+. ..+.+++|+|++.+|++++.|+.|++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 88899999999 99999999887765 338999999999999999999999999998766
Q ss_pred EEE
Q 003271 714 CRL 716 (835)
Q Consensus 714 ~i~ 716 (835)
++.
T Consensus 245 ~~~ 247 (902)
T 2oaj_A 245 MIM 247 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 49
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.8e-33 Score=319.28 Aligned_cols=280 Identities=19% Similarity=0.312 Sum_probs=247.7
Q ss_pred EEEEEecCCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271 546 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (835)
Q Consensus 546 ~~i~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW 624 (835)
.....+.+|.+.| .|+.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4556788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCeee-----------------------eEee
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCA-----------------------GVFK 680 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwDl~s~~~~-----------------------~~~~ 680 (835)
|+.++. .+..+.+|...|.+++|++. +..++++|+.|+.|++||+.++... ..+.
T Consensus 189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 999876 47888899999999999952 2458889999999999999877533 2222
Q ss_pred cC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce
Q 003271 681 SG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 758 (835)
Q Consensus 681 ~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~ 758 (835)
++ ....++++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++ .+
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~ 344 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL 344 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EE
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cE
Confidence 22 33445678899999999999999999999999999999999999999999999999999 999999999987 78
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+..+..|...|.++.|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++|+ ||.|+|||
T Consensus 345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 89999999999999997 5789999999999999999988776667888899999999999999998 89999996
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=327.42 Aligned_cols=283 Identities=14% Similarity=0.240 Sum_probs=235.2
Q ss_pred EEEEEe-cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC---Ce---EEEEeccCCCCeEEEEECCCCCEEEEEEC
Q 003271 546 TEFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (835)
Q Consensus 546 ~~i~~l-~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t---~~---~i~~l~~h~~~V~sv~fspdg~~Latgs~ 617 (835)
..+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 345666 89999999999999 999999999999999999876 33 23333 59999999999999999999999
Q ss_pred CCeEEEEecC---CCCceeEEeec------------CCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee
Q 003271 618 DRTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (835)
Q Consensus 618 Dg~I~IWDl~---t~~~~~~~~~~------------h~~~V~sl~--fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~ 680 (835)
||.|+|||+. ++.. ...+.. +...+.++. +++++ .++++++.|+.|++||+++++++..+.
T Consensus 132 dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999995 3332 222221 455666666 44665 478899999999999999999888776
Q ss_pred c-----CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcC----CCCEEEEEe-CCeEEEEE
Q 003271 681 S-----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWS 749 (835)
Q Consensus 681 ~-----~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fsp----dg~~Lasgs-Dg~I~IwD 749 (835)
. .+.+++|+|++..+++++.|+.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|+|||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 4 48999999999999999999999999999999999886 7888999996654 677999998 99999999
Q ss_pred cCCCCCcceEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E
Q 003271 750 IGSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T 802 (835)
Q Consensus 750 l~t~~~~~~i~~l~~--------------------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~ 802 (835)
++++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 9987 55555543 44568889999 7789999999999999999887744 2
Q ss_pred ecc-------------------------------------CCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 003271 803 LSA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 835 (835)
Q Consensus 803 l~~-------------------------------------h~~~V~~la~spd--g~~LaSgs~DG~V~IWd 835 (835)
+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 322 8999999999998 77999999999999996
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7e-34 Score=307.25 Aligned_cols=276 Identities=17% Similarity=0.247 Sum_probs=242.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 631 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-- 631 (835)
|.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888887777665555555558999999999999999999998 99999999987643
Q ss_pred eeEEee--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEee---cCceEEEEecCCCEEEEEEcCCcE
Q 003271 632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK---SGATQMRFQPRLGRILAAAIENYI 704 (835)
Q Consensus 632 ~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~--~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I 704 (835)
.+..+. .|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+. ..+.+++|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 223333 7899999999999976 66788899999999999877 344443 348899999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.+|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999999 999999999987 5555553 6788999999999999999
Q ss_pred EEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 784 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 784 gs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999989999999999999999999999999999999996
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.1e-33 Score=341.14 Aligned_cols=307 Identities=20% Similarity=0.300 Sum_probs=268.8
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++|++|+.||.|+|||+.
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 378999999999999943221 3466778999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
+++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++......+.+|...|.+++|+|++..++++++.||.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999987666788899999999999999445588899999999
Q ss_pred EEEECCCCeeeeEee----cCceEEEEec--CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 003271 666 RYWSINNGSCAGVFK----SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 739 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~----~~i~~l~fsp--~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las 739 (835)
++||+.++.....+. ..+..++|+| ++..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 999998887766554 4588999999 8999999999999999999999999999999999999999999999999
Q ss_pred Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEEcCCCc----------EE------
Q 003271 740 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TL------ 801 (835)
Q Consensus 740 gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl~~~~----------~~------ 801 (835)
++ ||.|++||+.++ ..+..+..+...+.+++|+|++.. +++++.++.+.+|++.... .+
T Consensus 246 ~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKN 322 (814)
T ss_dssp EETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTT
T ss_pred EeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECccc
Confidence 99 999999999987 788888889999999999999874 3666667788899875432 11
Q ss_pred ----------------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 802 ----------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 802 ----------------------------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+..+...+.+++|+|+|++|++++ ||.+.||+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 323 AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp SCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred ccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 1123455688999999999999888 88999985
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=341.82 Aligned_cols=313 Identities=9% Similarity=0.041 Sum_probs=231.7
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC------CCEEEEEeCCCe
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKK 578 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd------g~~Lasgs~Dg~ 578 (835)
...++++++.|+.|++|...... ........+.+|.+.|++++|+|+ +.+||+++.||+
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~---------------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTST---------------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT 236 (524)
T ss_dssp ----------CEEEEEEEEETTT---------------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred hhhhhccCCCCceEEEEEccCCC---------------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence 34567889999999999432221 011223456788999999999997 579999999999
Q ss_pred EEEEEcCCCeE-----------EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE-
Q 003271 579 AVLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL- 646 (835)
Q Consensus 579 I~VWd~~t~~~-----------i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl- 646 (835)
|+|||+.+++. ...+.+|...|++++|+++ ..|++|+.||+|++||+.++..+...+.+|...|.+|
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 99999976531 2467889999999999986 4899999999999999997765567788999999999
Q ss_pred -EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC
Q 003271 647 -DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 720 (835)
Q Consensus 647 -~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~ 720 (835)
.|++++..+|++|+.|++|++||+++++++..+.+ .+.+++|+|++..+++++.|+.|++||++++.++..+.+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 46777646899999999999999998876554432 367899999999999999999999999999988888889
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 721 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 721 h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l--~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
|...|.+|+|+|+|.+|++|+ |++|++||+..... ...... ..+...+.+++|+|++..+ ....+-.+..|+...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g 473 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVND 473 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-----
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCC
Confidence 999999999999999999999 99999999865311 110000 0112257799999999844 222222333333333
Q ss_pred CcEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003271 798 NKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 835 (835)
Q Consensus 798 ~~~~~l~~h~~~V~~la~spdg~---~LaSgs~DG~V~IWd 835 (835)
.....+.+|...|.+++|+|++. +||+|+.||.|+||+
T Consensus 474 ~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 474 VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 44457889999999999999964 999999999999995
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-33 Score=313.40 Aligned_cols=288 Identities=22% Similarity=0.354 Sum_probs=231.2
Q ss_pred cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccC---CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG---KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (835)
Q Consensus 501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~---~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg 577 (835)
.+.....++++|+ |+.+++|...++... ..+.... .............+...|++++|+|||++|++|+.|+
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDGSLV----ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTCCEE----EEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCCCEE----EEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 3344457888886 689999965443211 1100000 0000001111223455699999999999999999999
Q ss_pred eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 003271 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~ 657 (835)
.|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...|.+++|+|....+|+
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIA 223 (393)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEE
T ss_pred eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEE
Confidence 999999999999999999999999999999999999999999999999998764 34443 5678999999994455888
Q ss_pred EEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCC------------eEE
Q 003271 658 SCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCR 715 (835)
Q Consensus 658 sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~------------~~i 715 (835)
+|+.|+.|++||+++++.+..+. ..+.+++|+|++..|++++.|+.|++||+++. .+.
T Consensus 224 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~ 303 (393)
T 1erj_A 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303 (393)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE
T ss_pred EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcce
Confidence 99999999999999988776552 34889999999999999999999999999753 456
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC------CCCEEEEEEcCC
Q 003271 716 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYE 788 (835)
Q Consensus 716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp------dg~~L~sgs~dg 788 (835)
..+.+|...|.+++|++++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|+
T Consensus 304 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC 380 (393)
T ss_dssp EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred EEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence 67788999999999999999999999 999999999988 77888999999999999986 678999999999
Q ss_pred eEEEEEcCCC
Q 003271 789 TLELWNMTEN 798 (835)
Q Consensus 789 ~I~IwDl~~~ 798 (835)
+|+||++...
T Consensus 381 ~i~iW~~~~~ 390 (393)
T 1erj_A 381 KARIWKYKKI 390 (393)
T ss_dssp EEEEEEEEEC
T ss_pred cEEECccccc
Confidence 9999997643
No 55
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=311.04 Aligned_cols=288 Identities=17% Similarity=0.262 Sum_probs=243.9
Q ss_pred eeEEEEEecCCCCCEEEEEEeCC---CCEEEEEeCCCeEEEEEcCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271 544 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 618 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~VWd~~t-~~~i-~~l~~h~~~V~sv~fspdg~~Latgs~D 618 (835)
.+..+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 44567788999999999999999 69999999999999999987 5554 7888999999999999999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRIL 696 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~f--sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll 696 (835)
|.|++||+.++. ...+..|...|.+++| ++++. +|++++.|+.|++||+++++.+..+..+...+++......++
T Consensus 108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 3mmy_A 108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184 (368)
T ss_dssp SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence 999999999866 3446779999999999 77754 777999999999999999999888887766666666677999
Q ss_pred EEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCE----EEEEe-CCeEEEEEcCCCCCcceEEEeecCCC--
Q 003271 697 AAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN-- 767 (835)
Q Consensus 697 ~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~----Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~-- 767 (835)
+++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 99999999999999765443332 24456677777665543 77777 99999999988754355666666665
Q ss_pred ----------ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 768 ----------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 768 ----------~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.|.+++|+|++.+|++++.|+.|+|||+.+++++ .+..|...|.+++|+|++.+|++++.|+..+.|
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999887 677899999999999999999999998865443
No 56
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-32 Score=298.68 Aligned_cols=276 Identities=16% Similarity=0.253 Sum_probs=240.5
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..++++|+.|+.|++|...... .........+.+|...|.+++|+|++++|++|+.|+.|++|+..
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 4699999999999999544331 12234567789999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC-cEEEEEeCCCc
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSE 664 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~sgs~Dg~ 664 (835)
..........+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++. .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 99999898899999999999999999999999999999999876655566778999999999998754 46789999999
Q ss_pred EEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271 665 IRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs 741 (835)
|++||+++++.+..+. ..+.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC
Confidence 9999999999888775 4589999999999999999999999999999999988874 56899999999999888878
Q ss_pred CCeEEEEEcCCCCCcceEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 742 DELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~---------l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
|+.|+|||+++. ..+.. ...|...|++++|+|++++|++++.|+.|+|||+.+|+
T Consensus 276 d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999876 33333 34678899999999999999999999999999998875
No 57
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=307.62 Aligned_cols=271 Identities=23% Similarity=0.417 Sum_probs=214.6
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEe-cC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l-~g-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
++++|+.|+.|++|....+ .+..+..+ .+ |.+.|.+++|+|++++|++|+.|++|+|||+.
T Consensus 26 ~las~~~D~~i~lw~~~~~-----------------~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYD-----------------DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSS-----------------CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCC-----------------CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 8999999999999944321 11223344 34 99999999999999999999999999999984
Q ss_pred -------CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC---ceeEEeecCCCCeEEEEEcCCCCcE
Q 003271 586 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 586 -------t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~sl~fsp~g~~l 655 (835)
+.+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.... .++..+.+|...|.+++|+|++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence 346678889999999999999999999999999999999995332 34677889999999999999976 7
Q ss_pred EEEEeCCCcEEEEECCCC--eeeeEee---cCceEEEEecC--CCEEEEEEcCCcEEEEECCCC--------eEEEEEcC
Q 003271 656 LCSCDNNSEIRYWSINNG--SCAGVFK---SGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG 720 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~--~~~~~~~---~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~--------~~i~~l~~ 720 (835)
|++|+.|+.|++||+.++ +++..+. ..+.+++|+|+ +..+++++.|+.|++||++.+ .+...+.+
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 789999999999999876 5566655 44889999998 668999999999999999754 44555555
Q ss_pred -CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEEc
Q 003271 721 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 721 -h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~-~V~sv~fsp--dg~~L~sgs~dg~I~IwDl 795 (835)
|...|.+++|++++ +|++++ |+.|+|||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 89999999999776 566666 99999999876521112223456776 899999999 6889999999999999998
Q ss_pred CC
Q 003271 796 TE 797 (835)
Q Consensus 796 ~~ 797 (835)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
No 58
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-35 Score=327.11 Aligned_cols=276 Identities=20% Similarity=0.309 Sum_probs=242.9
Q ss_pred CEEEEEEeCCCC-EEEEE----------eCCCeEEEEEcCCCe---EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271 557 KVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (835)
Q Consensus 557 ~V~sl~fSpdg~-~Lasg----------s~Dg~I~VWd~~t~~---~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~ 622 (835)
.|.+++|+|+++ +|++| +.|+.|+|||+.+++ .+..+ .|...|.+++|+|++.+|++++.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 588999999987 99999 889999999998875 33334 5889999999999999999999999999
Q ss_pred EEecCC---CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------eeeE------eecCceEEE
Q 003271 623 VWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGV------FKSGATQMR 687 (835)
Q Consensus 623 IWDl~t---~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~------~~~~------~~~~i~~l~ 687 (835)
|||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ .... ....+.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999987 3335788889999999999999966688899999999999999876 3222 235589999
Q ss_pred EecC-CCEEEEEEcCCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCC-CEEEEEe-CC---eEEEEEcCCCCC
Q 003271 688 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGSK 755 (835)
Q Consensus 688 fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h------~~~I~sl~fspdg-~~Lasgs-Dg---~I~IwDl~t~~~ 755 (835)
|+|+ +..+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++ |+ .|++||+++..
T Consensus 173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~- 251 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN- 251 (416)
T ss_dssp ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-
T ss_pred eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-
Confidence 9999 688999999999999999999999988876 7899999999997 6888888 77 99999998863
Q ss_pred cceEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcE
Q 003271 756 GECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCV 831 (835)
Q Consensus 756 ~~~i~~l~-~~~~~V~sv~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg-~~LaSgs~DG~V 831 (835)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.|
T Consensus 252 -~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 252 -TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp -SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred -CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence 3455666 7899999999999 9999999999999999999999877 677999999999999999 899999999999
Q ss_pred EEeC
Q 003271 832 KIWK 835 (835)
Q Consensus 832 ~IWd 835 (835)
+|||
T Consensus 331 ~iw~ 334 (416)
T 2pm9_A 331 EVQT 334 (416)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.5e-33 Score=328.22 Aligned_cols=302 Identities=18% Similarity=0.286 Sum_probs=261.8
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCC-EEEEEEeC--CCCEEEEEeCCCeEEEE
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLW 582 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~-V~sl~fSp--dg~~Lasgs~Dg~I~VW 582 (835)
.+++++++ ++.+.+|...... ........+.+|.+. |++++|+| ++++|++|+.||.|+||
T Consensus 30 g~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 30 TNAIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp TTEEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCEEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 36788887 7899999543221 011346678899999 99999999 99999999999999999
Q ss_pred EcCCC--------eEEEEeccCCCCeEEEEECCCCCEEEEEECC----CeEEEEecCCCCceeEEeecCCCCeEEEEEcC
Q 003271 583 CTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650 (835)
Q Consensus 583 d~~t~--------~~i~~l~~h~~~V~sv~fspdg~~Latgs~D----g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp 650 (835)
|+.++ +.+..+..|...|.+++|+|++++|++++.| +.|++||. +. .+..+.+|...|.+++|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECC
Confidence 99754 7778888999999999999999999999988 78999983 33 4788889999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEee---c---CceEEEEecC-CCEEEEEEcCCcEEEEECCCCeEEEEE-c---
Q 003271 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFK---S---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q--- 719 (835)
Q Consensus 651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~---~i~~l~fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l-~--- 719 (835)
++..++++++.|+.|++||+.+++.+..+. . .+.+++|+|+ +..+++++.|+.|++||+++++.+..+ .
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence 988788999999999999999999888775 3 5889999999 999999999999999999999999998 6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~----~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
.|...|.+++|+ ++.+|++++ |+.|++||++++ ..+..+..+ ...+.++.|. ++.++++++.++.|++||
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence 899999999999 999999999 999999999987 677777665 3667888886 889999999999999999
Q ss_pred cCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 795 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 795 l~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+.+++.+ .+.+|...|.+++| |+ |++++.||.|++||
T Consensus 326 ~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 326 LGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp TTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred CCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence 9987776 67788889999988 77 77788888888875
No 60
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.3e-33 Score=327.40 Aligned_cols=299 Identities=16% Similarity=0.213 Sum_probs=252.5
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCC---CEEEEEEeCC-CCEEEEEeCCCeEEEEE
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWC 583 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sl~fSpd-g~~Lasgs~Dg~I~VWd 583 (835)
++++|+.|+.|++|... ....+..+.+|.+ .|++++|+|+ +++|++++.|+.|++||
T Consensus 175 ~l~~~~~d~~v~vwd~~-------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGP-------------------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EEEEEETTTEEEEEETT-------------------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EEEEEeCCCcEEEEeCC-------------------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 78999999999999421 2345667889999 9999999999 99999999999999999
Q ss_pred cCCCeEEEEe-c---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC----CCCeEEEEEcCCCCcE
Q 003271 584 TESFTVKSTL-E---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLDFHPSKEDL 655 (835)
Q Consensus 584 ~~t~~~i~~l-~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h----~~~V~sl~fsp~g~~l 655 (835)
+.+++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++. +..+..+ ...+.++.|. ++ .+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~ 311 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GN-GR 311 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ET-TE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CC-Ce
Confidence 9999999999 6 899999999999 999999999999999999998664 5666655 4678888886 44 46
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEeecC-----------------------------------------------------
Q 003271 656 LCSCDNNSEIRYWSINNGSCAGVFKSG----------------------------------------------------- 682 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~~~~~~~~~~----------------------------------------------------- 682 (835)
+++++.|+.|++||+.+++.+..+..+
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 391 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 391 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence 778888999999998876554433211
Q ss_pred ---------------------------------------------------------ceEEEEecCCCEEEEEEc-CCcE
Q 003271 683 ---------------------------------------------------------ATQMRFQPRLGRILAAAI-ENYI 704 (835)
Q Consensus 683 ---------------------------------------------------------i~~l~fsp~~~~ll~~s~-dg~I 704 (835)
+.+++|+ +..+++++. |+.|
T Consensus 392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i 469 (615)
T 1pgu_A 392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTI 469 (615)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCE
T ss_pred CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeE
Confidence 1122222 456666777 8888
Q ss_pred EEEECCCCeEE-EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeC-----
Q 003271 705 SILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP----- 776 (835)
Q Consensus 705 ~IwDl~t~~~i-~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fsp----- 776 (835)
++||+.++... ..+.+|...|.+++|+|++++|++++ |+.|++||+.++ +.+..+.. |...|.+++|+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGA 546 (615)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC---
T ss_pred EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccc
Confidence 88888876655 56677999999999999999999999 999999999987 77777777 999999999999
Q ss_pred -----CCCEEEEEEcCCeEEEEEcCCC-cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 777 -----TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 777 -----dg~~L~sgs~dg~I~IwDl~~~-~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++++|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999999999999999987 444 6789999999999999999 99999999999996
No 61
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.3e-34 Score=321.47 Aligned_cols=270 Identities=19% Similarity=0.344 Sum_probs=232.3
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
.++++|+.|+.|++|..... .....+.+|...|.+++|+|+|++|++|+.|+.|+|||+.+
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp SCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 68999999999999943221 34567789999999999999999999999999999999865
Q ss_pred Ce-------EEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEe-----ecCCCCeEEEEEcCCCC
Q 003271 587 FT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 587 ~~-------~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~-----~~h~~~V~sl~fsp~g~ 653 (835)
.. ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++.. +..+ .+|...|.+++|++.+.
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCC
Confidence 32 34567899999999999997 55799999999999999998764 4444 67899999999998656
Q ss_pred cEEEEEeCCCcEEEEECCC-CeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-------
Q 003271 654 DLLCSCDNNSEIRYWSINN-GSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------- 722 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s-~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------- 722 (835)
.+|++|+.|+.|++||++. .+.+..+. ..+.+++|+|++.+|++++.|+.|++||++++..+..+..+.
T Consensus 219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 298 (380)
T 3iz6_a 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL 298 (380)
T ss_dssp CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc
Confidence 7899999999999999984 45555554 459999999999999999999999999999999888876543
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l----~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
..|.+++|+|+|.+|++++ ||.|++||+.++ +.+..+ .+|...|.+++|+|++.+|++++.|+.|+||++..
T Consensus 299 ~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 299 PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 2489999999999999999 999999999887 555555 57899999999999999999999999999999876
Q ss_pred Cc
Q 003271 798 NK 799 (835)
Q Consensus 798 ~~ 799 (835)
.+
T Consensus 376 ~~ 377 (380)
T 3iz6_a 376 HR 377 (380)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-33 Score=311.61 Aligned_cols=277 Identities=19% Similarity=0.345 Sum_probs=239.3
Q ss_pred EEecCCCCCEE--EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 549 QLIPASTSKVE--SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 549 ~~l~gH~~~V~--sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
....+|.+.+. +++|+ +..+++++.|+.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|+|||
T Consensus 85 ~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp EECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 33456766644 45555 45678888999999999999998877765 889999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEee---cCceEEEEecCCCEEEEEEcC
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK---SGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d 701 (835)
+.+++. +..+.+|...|.+++|++ .++++++.||.|++||++. ...+..+. ..+.+++|+|++..+++++.|
T Consensus 163 ~~~~~~-~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 163 VESQTK-LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp TTTCCE-EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CcCCeE-EEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 998764 788889999999999953 4888999999999999984 44455544 458999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
+.|++||++++..+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...|.+++|+|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~ 314 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPH 314 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSS
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCC
Confidence 999999999999999999999999999999976 5666654 899999999987 5666665 5678999999999
Q ss_pred CCEEEEEE--cCCeEEEEEcCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 778 FPSLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 778 g~~L~sgs--~dg~I~IwDl~~~~~~---~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+++|++++ .|+.|+|||+.++... .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99999965 7999999999987655 4678999999999999999999999999999996
No 63
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=319.19 Aligned_cols=276 Identities=18% Similarity=0.338 Sum_probs=229.7
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-----------EEEEeccCC------------CCeEEEEECCCC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 609 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~i~~l~~h~------------~~V~sv~fspdg 609 (835)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 578888998 889999999998
Q ss_pred --CEEEEEECCCeEEEEecCCCCce--------------------------------------e-EEeecCCCCeEEEEE
Q 003271 610 --SRLATSSADRTVRVWDTENPDYS--------------------------------------L-RTFTGHSTTVMSLDF 648 (835)
Q Consensus 610 --~~Latgs~Dg~I~IWDl~t~~~~--------------------------------------~-~~~~~h~~~V~sl~f 648 (835)
.+|++++.|++|+|||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753321 1 123679999999999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-CeeeeE----------eecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE--
Q 003271 649 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGV----------FKSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 714 (835)
Q Consensus 649 sp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~----------~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~-- 714 (835)
+|++. +|++| .|+.|++||+++ +..+.. ....+.+++|+|++ ..+++++.|+.|++||++++..
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99976 56677 799999999994 444442 23458999999998 8999999999999999999876
Q ss_pred --EEEEcCCCC------------CeEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCcceEEEeecCCCc-----------
Q 003271 715 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 768 (835)
Q Consensus 715 --i~~l~~h~~------------~I~sl~fspdg~~LasgsDg~I~IwDl~t-~~~~~~i~~l~~~~~~----------- 768 (835)
+..+..|.. .|.+++|+|++.+|++++++.|+|||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 678887776 89999999999999999999999999987 4 455555555421
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccC---------------------------------CCCee
Q 003271 769 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 811 (835)
Q Consensus 769 ----V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h---------------------------------~~~V~ 811 (835)
+..++|+|++.+|++++.|+.|+|||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765443 45688
Q ss_pred EEEEeCCCCEEEEEECCCcEEEe
Q 003271 812 SLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 812 ~la~spdg~~LaSgs~DG~V~IW 834 (835)
+++|+|++.+||+++.++ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998876 6666
No 64
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.1e-33 Score=302.92 Aligned_cols=282 Identities=18% Similarity=0.223 Sum_probs=216.9
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----eEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEE
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRV 623 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~I 623 (835)
.+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 46799999999999999999999999999999999876 57788889999999999999 6999999999999999
Q ss_pred EecCCCC--------ceeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEee-------------
Q 003271 624 WDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------- 680 (835)
Q Consensus 624 WDl~t~~--------~~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------------- 680 (835)
||+.++. ..+..+..|...|.+++|+|+ +. ++++++.|+.|++||+++++.+..+.
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9998764 346778889999999999998 65 67789999999999998876543322
Q ss_pred ---cCceEEEEecC---CCEEEEEEcCCcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCC----CEEEEEe-CCeEEE
Q 003271 681 ---SGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRV 747 (835)
Q Consensus 681 ---~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg----~~Lasgs-Dg~I~I 747 (835)
..+.+++|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|.+++|+|++ .+|++++ |+.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 34789999997 89999999999998888887765 67788899999999999998 7899998 999999
Q ss_pred EEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEE
Q 003271 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV 822 (835)
Q Consensus 748 wDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~----dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~L 822 (835)
||++.+. ...........+....+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++|
T Consensus 245 wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 321 (351)
T 3f3f_A 245 FKITEKL---SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL 321 (351)
T ss_dssp EEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred EeCCCCc---CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence 9998763 22222223333333444444443333333 335556655555555 677899999999999999999
Q ss_pred EEEECCCcEEEeC
Q 003271 823 ASASHDKCVKIWK 835 (835)
Q Consensus 823 aSgs~DG~V~IWd 835 (835)
++|+.||.|+|||
T Consensus 322 ~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 322 SSAGDDGKVRLWK 334 (351)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEecCCCcEEEEe
Confidence 9999999999996
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.5e-33 Score=300.05 Aligned_cols=249 Identities=19% Similarity=0.292 Sum_probs=211.2
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC--CeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEE
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 624 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t--~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IW 624 (835)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +.+|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 4677899999999999999864 8999999999999999
Q ss_pred ecCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCee--eeEe---ecCceEEEEecC------
Q 003271 625 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF---KSGATQMRFQPR------ 691 (835)
Q Consensus 625 Dl~t~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~--~~~~---~~~i~~l~fsp~------ 691 (835)
|+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ ...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 2356678899999999999972 34788999999999999987632 2222 345889999997
Q ss_pred -------CCEEEEEEcCCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCc
Q 003271 692 -------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKG 756 (835)
Q Consensus 692 -------~~~ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~ 756 (835)
+..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 4689999999999999998765 667888999999999999985 8899998 999999999875321
Q ss_pred ceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 757 ECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 757 ~~i~~l--~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
.....+ ..+...|.+++|+|++++|++++.|+.|+||+...
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 222233 45678899999999999999999999999999763
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-33 Score=305.74 Aligned_cols=276 Identities=14% Similarity=0.141 Sum_probs=238.0
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe---EEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEE
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR 622 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~ 622 (835)
.+....+|.+.|++++|+|++++|++++.|+.|+||++.+++ ....+..|...|.+++|+|+++ +|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 345567899999999999999999999999999999998876 3445568999999999999999 999999999999
Q ss_pred EEec-CCCCceeEEeec--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEe--ecCceEEEE
Q 003271 623 VWDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVF--KSGATQMRF 688 (835)
Q Consensus 623 IWDl-~t~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s---------~~~~~~~--~~~i~~l~f 688 (835)
+||+ .++. ...+.+ |...|.+++|+| + .++++++.|+.|++||+++ ++++..+ ...+.+++|
T Consensus 83 ~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 83 KVDLIGSPS--FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EECSSSSSS--EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEeccCCc--eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 9999 7764 477788 999999999999 4 4777999999999999987 6555444 355889999
Q ss_pred ecCCCEEEEEEcCCcEEEEECCC-Ce--EEEEEcCCCCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCC---CcceEE
Q 003271 689 QPRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIH 760 (835)
Q Consensus 689 sp~~~~ll~~s~dg~I~IwDl~t-~~--~i~~l~~h~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~---~~~~i~ 760 (835)
++++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|++|++.... ....+.
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 9876 99999999999999998 43 3445556889999999999 999999999 9999999998751 014555
Q ss_pred EeecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCC
Q 003271 761 ELSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 761 ~l~~~~~---------~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-~~~V~~la~spdg~~LaSgs~DG 829 (835)
.+..|.. .|.+++|+|++++|++++.|+.|++||+.+++.+ .+..| ...|.+++ +++.+|++++.||
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 6666654 9999999999999999999999999999999877 67777 99999999 9999999999999
Q ss_pred c
Q 003271 830 C 830 (835)
Q Consensus 830 ~ 830 (835)
.
T Consensus 315 ~ 315 (342)
T 1yfq_A 315 T 315 (342)
T ss_dssp H
T ss_pred c
Confidence 8
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.9e-34 Score=325.36 Aligned_cols=279 Identities=20% Similarity=0.283 Sum_probs=223.2
Q ss_pred EEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEE
Q 003271 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IW 624 (835)
....+|...|+||+|+| ++.+||+|+.||.|+|||+.+++ ....+.+|.+.|++|+|+| ++.+|++|+.||+|+||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 56799999999999999998765 4455678999999999998 68999999999999999
Q ss_pred ecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCC-EEEE
Q 003271 625 DTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLG-RILA 697 (835)
Q Consensus 625 Dl~t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~-~ll~ 697 (835)
|+++.. ...+. .+...+.+++|+|++. +|++|+.||.|++||++.. .+..+ ...+.+++|+|++. .+++
T Consensus 193 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 193 DFKGNI--LRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp ETTSCE--EEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred eccCCc--eeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEE
Confidence 998653 23332 2344678999999976 7779999999999999754 34333 35589999999986 5778
Q ss_pred EEcCCcEEEEECCCCeEEE---EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC------
Q 003271 698 AAIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------ 767 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~---~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~------ 767 (835)
++.|+.|++||+++.+... ...+|...|++++|+|+|.+|++++ |+.|+|||+.++ .+...+..|..
T Consensus 269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSS
T ss_pred ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccc
Confidence 8899999999998765433 3356899999999999999999999 999999999987 44444443332
Q ss_pred ceEEEEEeCCCCEEEEEEc------------CCeEEEEEcCCCcEE-Ee-ccCCCCeeEE-EEeCCCCEEEEEECCCcEE
Q 003271 768 KFHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVK 832 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~------------dg~I~IwDl~~~~~~-~l-~~h~~~V~~l-a~spdg~~LaSgs~DG~V~ 832 (835)
.+..+.|+|++..++++.. ++.|++||..+++++ .+ ..|...|.++ +|+|+|.+|++|+ |+.|+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~ 424 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHIL 424 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEE
Confidence 2345677777777766643 247999999999987 33 4788889887 6999999999876 78999
Q ss_pred EeC
Q 003271 833 IWK 835 (835)
Q Consensus 833 IWd 835 (835)
|||
T Consensus 425 iW~ 427 (435)
T 4e54_B 425 IWS 427 (435)
T ss_dssp ECC
T ss_pred EEE
Confidence 997
No 68
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.4e-32 Score=308.91 Aligned_cols=268 Identities=22% Similarity=0.409 Sum_probs=231.5
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
+.+|+||+++ +||+|. |++|+|||+.+++++..+ .+|...|++|+|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 5679999764 787775 899999999999887765 4678899999999999999999999999999999876 4788
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET 711 (835)
Q Consensus 636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t 711 (835)
+.+|...|.++++++ .++++|+.|+.+++||...... +..+. ..+..+.+++++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 4888999999999999986543 34443 4488899999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCeEEEEEcCCC-CEEEEE--e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 712 QV----CRLKLQGHKNQVHSVCWNTSG-EYLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 712 ~~----~i~~l~~h~~~I~sl~fspdg-~~Lasg--s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
++ .+.....|...|.+++|+|++ .+++++ + |++|++||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 345677799999999999976 455543 3 899999999988 66666664 467899999999999988
Q ss_pred EE--cCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 784 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 784 gs--~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++ .|+.|+|||+.+++++ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 5789999999999887 7889999999999999999999999999999997
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-33 Score=311.49 Aligned_cols=277 Identities=13% Similarity=0.100 Sum_probs=224.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCC-------eEEEEEcCCCe----------EEEEeccCCCCeEEEEECCCCCEEEEEE--
Q 003271 556 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFT----------VKSTLEEHTQWITDVRFSPSLSRLATSS-- 616 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg-------~I~VWd~~t~~----------~i~~l~~h~~~V~sv~fspdg~~Latgs-- 616 (835)
-+|+|++|+||+++||+|+.|. +|+||++.... ....+..|...|.+++++ +..+++|+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999998643 59999987542 123567888999998875 44666654
Q ss_pred ---------CCCeEEEEecCCCCceeEEe--------ecCCCCeEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCeeeeE
Q 003271 617 ---------ADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 678 (835)
Q Consensus 617 ---------~Dg~I~IWDl~t~~~~~~~~--------~~h~~~V~sl~fsp~g~~ll-~sgs~Dg~I~iwDl~s~~~~~~ 678 (835)
.|+.|++|++......+... ..+...+.+++|+|||+.++ ++++.|++|++||+++++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 47789999987665433221 23445689999999998764 4566899999999999998877
Q ss_pred ee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 003271 679 FK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 749 (835)
Q Consensus 679 ~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~--l~~h~~~I~sl~fspdg~~Lasgs-Dg----~I~IwD 749 (835)
+. ..+.+++|+|++.++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 75 4489999999999888877 55677777777765543 345888999999999999999988 65 688899
Q ss_pred cCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E-eccCCCCeeEEEEeCCCCEEEEEE
Q 003271 750 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 750 l~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~-l~~h~~~V~~la~spdg~~LaSgs 826 (835)
+..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ . +.+|...|++|+|+|||++||||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788999999999999999999999999999999999987 3 468999999999999999999999
Q ss_pred CCCcEEEeC
Q 003271 827 HDKCVKIWK 835 (835)
Q Consensus 827 ~DG~V~IWd 835 (835)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.2e-33 Score=338.47 Aligned_cols=284 Identities=17% Similarity=0.307 Sum_probs=253.7
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEee---cCceEEEEec-CCCEEEEEEc
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK---SGATQMRFQP-RLGRILAAAI 700 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~---~~i~~l~fsp-~~~~ll~~s~ 700 (835)
+.+++. +..+.+|...|.+++|+|++. ++++++.||.|++||+.++ .....+. ..+.+++|+| ++..+++++.
T Consensus 84 ~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcE-EEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 998764 778889999999999999987 5668999999999999887 5555554 4589999999 7889999999
Q ss_pred CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271 701 ENYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~-~~I~sl~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp 776 (835)
|+.|++||+.++.....+..+. ..+.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 9999999999887777666554 8899999999 999999999 999999999887 78888889999999999999
Q ss_pred CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEEEeC
Q 003271 777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 835 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~--~LaSgs~DG~V~IWd 835 (835)
++++|++++.||.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 9999999999999999999998877 6778889999999999987 455555 55666663
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=305.64 Aligned_cols=287 Identities=20% Similarity=0.363 Sum_probs=235.1
Q ss_pred EEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeEEEEe-------------ccCCCCeEEEEECC-CCCE
Q 003271 547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSR 611 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~i~~l-------------~~h~~~V~sv~fsp-dg~~ 611 (835)
....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+ .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3556788999999999999 9999999999999999999876544333 25999999999999 7889
Q ss_pred EEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCeeeeEee---cCceEE
Q 003271 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQM 686 (835)
Q Consensus 612 Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~--~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l 686 (835)
|++++.||.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++.+..+. ..+.++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999998663 44443 778899999998643 378899999999999999988877765 458999
Q ss_pred EEecCCC-EEEEEEcCCcEEEEECCCCe-EEEEE---------------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEE
Q 003271 687 RFQPRLG-RILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVW 748 (835)
Q Consensus 687 ~fsp~~~-~ll~~s~dg~I~IwDl~t~~-~i~~l---------------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~Iw 748 (835)
+|+|++. .+++++.|+.|++||+++.. ++..+ ..|...|.+++|+|++.+|++++ |+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999998 48899999999999998764 44444 46888999999999999999999 9999999
Q ss_pred EcCCCCCcceEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003271 749 SIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 825 (835)
Q Consensus 749 Dl~t~~~~~~i~~--l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSg 825 (835)
|+.++........ .......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++.+|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 9998743211111 0111122222233344566888889999999999999887 677899999999999999999999
Q ss_pred ECCCcEEEeC
Q 003271 826 SHDKCVKIWK 835 (835)
Q Consensus 826 s~DG~V~IWd 835 (835)
+.||.|+|||
T Consensus 353 ~~dg~i~iw~ 362 (408)
T 4a11_B 353 SRDCNILAWV 362 (408)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9999999996
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2e-32 Score=329.93 Aligned_cols=273 Identities=16% Similarity=0.271 Sum_probs=232.8
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..++++|+.|+.|++|....... ........+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~--------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDK--------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTT--------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCCCc--------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 46899999999999995443211 1112356788999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE---eecCCCCeEEEEEcCCCC-cEEEEEeC
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN 661 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~---~~~h~~~V~sl~fsp~g~-~ll~sgs~ 661 (835)
+++.+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ... ..+|...|.+++|+|++. .++++|+.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999999865322 222 246888999999999863 57889999
Q ss_pred CCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271 662 NSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La 738 (835)
|+.|++||++++++...+.+ .+.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 99999999999988877654 48999999999999999999999999999999888776 456899999999999999
Q ss_pred EEeCCeEEEEEcCCCCCcceEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 739 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 739 sgsDg~I~IwDl~t~~~~~~i~~l~~~-------------------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
+++++.|+|||++++ .++..+..+ ...+.+++|+|++++|++++.||.|+|||+..
T Consensus 619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 988999999999987 555544322 12378899999999999999999999999853
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-32 Score=351.60 Aligned_cols=283 Identities=21% Similarity=0.359 Sum_probs=258.4
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
..+.+|.+.|++++|+|||++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYI 704 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I 704 (835)
++ .+..+.+|...|.+++|+|++ ..++++|+.|+.|++||+.+++++..+. ..+.+++|+|++..+++++.||.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 76 478889999999999999963 4578899999999999999999887765 448999999999999999999999
Q ss_pred EEEECCCCeEEEEEcC-------------CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-cCCCceE
Q 003271 705 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKFH 770 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~-------------h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-~~~~~V~ 770 (835)
++||+.++.....+.. +...+.+++|+|+|.++++++++.|.+||+.++ ..+..+. +|...|.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence 9999999887766542 233788999999999999999999999999987 4454444 7889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 771 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999877 7789999999999999999999999999999996
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.7e-34 Score=318.18 Aligned_cols=272 Identities=16% Similarity=0.207 Sum_probs=232.3
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
.+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|+|||+.++. ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 3457999999999999999999999999987776666656 455566789999999999999999999999765 46677
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQV 713 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~ 713 (835)
.+|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+. ..+.+++|+|++..|++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 77799999999999999998887766 448999999999999999999999999999999
Q ss_pred EEEEEcC---CCCCeEEEE---------------------EcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe-ecCCC
Q 003271 714 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN 767 (835)
Q Consensus 714 ~i~~l~~---h~~~I~sl~---------------------fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l-~~~~~ 767 (835)
.+..+.. |...|.+++ |+|++++|++++ |+.|++||++++ ..+..+ ..|..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 444455544 578999999999 999999999987 444444 45788
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCCcE--EEecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 768 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 768 ~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~~~--~~l~~-h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.|.+++|+|++. +|++++.|+.|++||+.+++. ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 999999999999 999999999999999998754 35554 7778888865 5788999999999999996
No 75
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.5e-32 Score=311.79 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=240.5
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
.+....+|...|+|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+
T Consensus 125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 34445678888999888 7889999999999999999999999999999999999999 7889999999999999999
Q ss_pred CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEee---cCceEEEEecCCCEEEEEEc
Q 003271 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK---SGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~---~~i~~l~fsp~~~~ll~~s~ 700 (835)
.+++. +..+.+|...|.+++|+++ ++++|+.||.|++||+.++... ..+. ..+.++.| +++.+++++.
T Consensus 201 ~~~~~-~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEM-LNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCE-EEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcE-EEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 98764 7888899999999999743 7889999999999999987654 3332 34677777 6789999999
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271 701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~ 779 (835)
|+.|++||+++++.+..+.+|...|.++.| ++.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.
T Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~ 347 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNK 347 (435)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSS
T ss_pred CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCC
Confidence 999999999999999999999999999999 467899888 999999999987 788899999999999999 788
Q ss_pred EEEEEEcCCeEEEEEcCCCc---------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 780 SLLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 780 ~L~sgs~dg~I~IwDl~~~~---------~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|++++.||.|++||+.++. ++ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 99999999999999997654 44 78899999999999 688999999999999997
No 76
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.8e-32 Score=289.07 Aligned_cols=268 Identities=22% Similarity=0.395 Sum_probs=227.4
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
+.+|+||+++ +||+|. |++|+|||+.+++++..+ .+|...|++++|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 5789999986 777765 999999999999988766 4678889999999999999999999999999999876 4788
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET 711 (835)
Q Consensus 636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t 711 (835)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. ..+..+.+.+++..+++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998887764 3888999999999999987643 33333 4488899999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCeEEEEEcCCCCEE-E--EEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 712 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 712 ~~----~i~~l~~h~~~I~sl~fspdg~~L-a--sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
++ .......+...|.++.+++++..+ + +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 334556688899999999976533 3 333 789999999876 333 33456778999999999999888
Q ss_pred EE--cCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 784 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 784 gs--~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++ .|+.|+|||+.+++++ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999988 7889999999999999999999999999999997
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=290.95 Aligned_cols=270 Identities=14% Similarity=0.164 Sum_probs=239.3
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++|++++.||.|++||+
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3468999999999999943322 345677899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCc----------eeEEeecCCC--CeEEEE
Q 003271 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLD 647 (835)
Q Consensus 585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~----------~~~~~~~h~~--~V~sl~ 647 (835)
.+++.+..+. |...|.+++|+|++.+|++++.+ +.|++||+..... ....+..|.. .|.+++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 9999998887 88999999999999999999999 9999999986542 2344555666 899999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271 648 FHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 648 fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~ 723 (835)
|+|++. ++++++.||.|++||+++ .+.+..+. ..+.+++|+|++.+|++++.|+.|++||+++++.+..+. +..
T Consensus 183 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 183 WSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp ECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred EcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 999976 667889999999999998 67776665 458999999999999999999999999999999988887 788
Q ss_pred CeEEEEEcCCCCEEEEEe-CC--------------eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271 724 QVHSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-Dg--------------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg 788 (835)
.+.+++|+|++.++++++ ++ .|++||+.++ ..+..+..|...|.+++|+|++++|++++.|+
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999998 66 8999999888 78888899999999999999999999999999
Q ss_pred eEEEEEcCCCc
Q 003271 789 TLELWNMTENK 799 (835)
Q Consensus 789 ~I~IwDl~~~~ 799 (835)
.|+||++..+.
T Consensus 338 ~v~iw~~~~~~ 348 (369)
T 3zwl_B 338 FIRLHHFEKSY 348 (369)
T ss_dssp EEEEEEECHHH
T ss_pred eEEEEECcccc
Confidence 99999997654
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2e-32 Score=304.45 Aligned_cols=274 Identities=17% Similarity=0.147 Sum_probs=238.1
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC----C---CEEEEEeCCCeE
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 579 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd----g---~~Lasgs~Dg~I 579 (835)
.++++|+.|+.|++|........ ..+..+..+.+|...|++++|+|+ + ++|++++.|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 68999999999999955443211 112345667799999999999999 9 999999999999
Q ss_pred EEEEcCCCeE-----EEEeccC-----CCCeEEEEEC----CCCCE-EEEEECCCeEEEEecCC------CCceeE----
Q 003271 580 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 634 (835)
Q Consensus 580 ~VWd~~t~~~-----i~~l~~h-----~~~V~sv~fs----pdg~~-Latgs~Dg~I~IWDl~t------~~~~~~---- 634 (835)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999988876 7888888 5899999999 99999 99999999999999987 443 33
Q ss_pred -Ee-------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEE
Q 003271 635 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILA 697 (835)
Q Consensus 635 -~~-------~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~ 697 (835)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. .+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 45 4488999999999997 788999999999999999988877654 4889999999999999
Q ss_pred EEcC---CcEEEEECCCCeEEEEEcC-------------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEE
Q 003271 698 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 760 (835)
Q Consensus 698 ~s~d---g~I~IwDl~t~~~i~~l~~-------------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~ 760 (835)
++.| +.|++||+++++.+..+.+ |...|.+++|+|++.+|++++ |+.|+|||++++ .++.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~ 327 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT 327 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence 9999 9999999999999999998 999999999999999999999 999999999987 7788
Q ss_pred Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEEcCCCc
Q 003271 761 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 761 ~l~------~~---------------~~~V~sv~fspdg----------~~L~sgs~dg~I~IwDl~~~~ 799 (835)
.+. .| ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 888 77 8999999999998 799999999999999998764
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.1e-32 Score=296.99 Aligned_cols=277 Identities=17% Similarity=0.224 Sum_probs=233.8
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (835)
...++++|+.|+.|++|.... ..+..+..+.+|...|++++|+|++++|++++.|+.|++||+
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSG-----------------NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEET-----------------TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCC-----------------CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 347899999999999993322 124467788899999999999999999999999999999999
Q ss_pred CCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271 585 ESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 585 ~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~sg 659 (835)
.+++.... +..|...|.+++|+|++++|++++.|+.|++||+..... .......|...|.+++|+|++. +++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEE
Confidence 98875544 467999999999999999999999999999999998763 2344467899999999999876 67789
Q ss_pred eCCCcEEEEECC------------------CCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271 660 DNNSEIRYWSIN------------------NGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718 (835)
Q Consensus 660 s~Dg~I~iwDl~------------------s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l 718 (835)
+.|+.|++||++ .++++..+. ..+.+++|+|++..+++++.|+.|++||+++++++..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 999999999954 566666664 45899999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCC--CC-----------------------------CcceE------EE
Q 003271 719 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HE 761 (835)
Q Consensus 719 ~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t--~~-----------------------------~~~~i------~~ 761 (835)
..|...|.+++|+|++.+|+++.|+.|++|++.+ +. ..... ..
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 9999999999999999999988899999999987 31 00110 22
Q ss_pred e-ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEEcCCCc
Q 003271 762 L-SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 762 l-~~~~~~V~sv~fs-pdg---~~L~sgs~dg~I~IwDl~~~~ 799 (835)
+ .+|...|.+++|+ +++ .+|++++.||.|++||+.+++
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 3 4789999999966 666 899999999999999986643
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=336.72 Aligned_cols=329 Identities=11% Similarity=0.044 Sum_probs=245.8
Q ss_pred ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC-CCEEEEEeC
Q 003271 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGH 575 (835)
Q Consensus 497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~ 575 (835)
+....+.....++++|+.|+.|++|...........+...+.. ...+.+|.+.|++++|+|+ +.+|++|+.
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~--------~~~~~~h~~~V~sl~~sp~~~~~l~~g~~ 172 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS--------SFFPAARLSPIVSIQWNPRDIGTVLISYE 172 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH--------HTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc--------ccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence 3345556677899999999999999554331000000000000 0234789999999999996 578999999
Q ss_pred CCeEEEEEcCCCeEEEEeccC------------------CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE-Ee
Q 003271 576 DKKAVLWCTESFTVKSTLEEH------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF 636 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h------------------~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~-~~ 636 (835)
|+.| |||+.+++.+..+..| ...|++++|+|++.+|++++.||+|+|||+.+++.... .+
T Consensus 173 dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l 251 (902)
T 2oaj_A 173 YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTV 251 (902)
T ss_dssp SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence 9999 9999999999888766 57799999999999999999999999999988764221 12
Q ss_pred ---ec-------------CCCCeEEEEEc----CCCCcEEEEEeCC----------------------------------
Q 003271 637 ---TG-------------HSTTVMSLDFH----PSKEDLLCSCDNN---------------------------------- 662 (835)
Q Consensus 637 ---~~-------------h~~~V~sl~fs----p~g~~ll~sgs~D---------------------------------- 662 (835)
.. |...|.+++|+ |++..++++|+.|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~ 331 (902)
T 2oaj_A 252 FETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP 331 (902)
T ss_dssp SCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred cccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCc
Confidence 11 34578899995 3333455555333
Q ss_pred ------------------------------------------CcEEEEECCCCeeeeE----------------------
Q 003271 663 ------------------------------------------SEIRYWSINNGSCAGV---------------------- 678 (835)
Q Consensus 663 ------------------------------------------g~I~iwDl~s~~~~~~---------------------- 678 (835)
+.|++||+.++.....
T Consensus 332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~ 411 (902)
T 2oaj_A 332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS 411 (902)
T ss_dssp SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred cceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEE
Confidence 4445555443321110
Q ss_pred -------------------ee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE----EE--Ec-----CCCCCe
Q 003271 679 -------------------FK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LK--LQ-----GHKNQV 725 (835)
Q Consensus 679 -------------------~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i----~~--l~-----~h~~~I 725 (835)
+. ..+..++|+|++..+++++.|+.|++||+.++... .. +. +|...|
T Consensus 412 ~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V 491 (902)
T 2oaj_A 412 VPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAV 491 (902)
T ss_dssp EEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCE
T ss_pred cCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCce
Confidence 00 01223456788899999999999999999876321 11 22 788999
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------------------------------------cceEEEe
Q 003271 726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------------------------------------GECIHEL 762 (835)
Q Consensus 726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~------------------------------------------~~~i~~l 762 (835)
.+|+|+|++++|++++ |++|+|||+.+++. ..++..+
T Consensus 492 ~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 571 (902)
T 2oaj_A 492 DKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV 571 (902)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE
T ss_pred eEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE
Confidence 9999999999999999 99999999986521 1246778
Q ss_pred ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE------e-ccCCCCeeEEEEe-----CCC---CEEEEEEC
Q 003271 763 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDKLVSSLAAS-----TVN---GMVASASH 827 (835)
Q Consensus 763 ~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~------l-~~h~~~V~~la~s-----pdg---~~LaSgs~ 827 (835)
.+|...|++++|+|+| +|++|+.|++|+|||+++..++. + .+|.+.|++|+|+ ||| .+|++|+.
T Consensus 572 ~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~ 650 (902)
T 2oaj_A 572 HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTD 650 (902)
T ss_dssp CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEec
Confidence 8899999999999999 99999999999999998887652 2 2789999999999 885 79999999
Q ss_pred CCcEEEeC
Q 003271 828 DKCVKIWK 835 (835)
Q Consensus 828 DG~V~IWd 835 (835)
|++|++||
T Consensus 651 D~tv~~wd 658 (902)
T 2oaj_A 651 MGEVITYK 658 (902)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEE
Confidence 99999996
No 81
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-31 Score=303.53 Aligned_cols=270 Identities=26% Similarity=0.473 Sum_probs=240.3
Q ss_pred EEEEecCCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 547 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 547 ~i~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
....+.+|.+.| .|+ ++++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 456688999875 554 4568899999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCC
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIEN 702 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg 702 (835)
+.+++ .+..+.+|...|.++.|++ ..+++|+.||.|++||+.+++++..+.. .+.++.+ ++..+++++.|+
T Consensus 186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 99876 4788889999999999974 3688999999999999999998877764 3677777 788999999999
Q ss_pred cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271 703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
.|++||+++++++..+.+|...|.+++| ++.+|++++ |+.|++||++++ .++..+..|...+.++.++ +.+|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 788999998 999999999988 7888888999999888875 5689
Q ss_pred EEEEcCCeEEEEEcCCCcEE-Eecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 782 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~~~~-~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++++.|+.|++||+.+++.+ .+.. |...|.+++|+ +.+|++|+.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998877 4444 88999999995 68999999999999996
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.7e-33 Score=300.75 Aligned_cols=247 Identities=21% Similarity=0.275 Sum_probs=204.7
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWD 625 (835)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++.+|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456999999999999999999999999999999998775 4678899999999999986 489999999999999999
Q ss_pred cCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEe---ecCceEEEEecC------
Q 003271 626 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF---KSGATQMRFQPR------ 691 (835)
Q Consensus 626 l~t~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~---~~~---~~~i~~l~fsp~------ 691 (835)
+.++. .....+.+|...|.+++|+|++ ..+|++|+.|+.|++||++.+... ..+ ...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 2456778899999999999983 357889999999999999875321 222 244788899987
Q ss_pred -----------CCEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC----CEEEEEe-CCeEEEEEcCC
Q 003271 692 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS 752 (835)
Q Consensus 692 -----------~~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspdg----~~Lasgs-Dg~I~IwDl~t 752 (835)
+.+|++++.|+.|++||++.. .++..+.+|...|.+++|+|++ .+|++++ |++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 368999999999999999854 5677888999999999999986 8899999 99999999986
Q ss_pred CCCc-ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 753 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 753 ~~~~-~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
.... .....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3211 1223345678899999999999999999999999999975
No 83
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.6e-31 Score=298.34 Aligned_cols=270 Identities=18% Similarity=0.304 Sum_probs=231.7
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
++|++| .|++|++|....+ ....+..+.+|.+.|+||+|+|||++||+|+.||.|+|||+.+
T Consensus 117 n~lAvg-ld~tV~lWd~~tg-----------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 117 NVLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp SEEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 477777 5999999944332 1223344568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||.......+..+.+|...+.++.|+|++. ++++++.|+.|+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~ 255 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 255 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence 99999999999999999885 679999999999999999988777888999999999999999976 677999999999
Q ss_pred EEECCCCeee----eE---eecCceEEEEecCCCEEE-EE--EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 667 YWSINNGSCA----GV---FKSGATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 667 iwDl~s~~~~----~~---~~~~i~~l~fsp~~~~ll-~~--s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
+||..+++.. .. ....+.+++|+|.+..++ ++ +.|+.|++||+.++.+...+.. ...+.++.|++++..
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKE 334 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCe
Confidence 9999876532 22 235588999999876554 33 3689999999999999988874 467889999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 737 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 737 Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
+++++ |+.|+|||+.++ .++.++.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus 335 lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 88764 889999999988 789999999999999999999999999999999999999776544
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=300.95 Aligned_cols=271 Identities=18% Similarity=0.250 Sum_probs=230.8
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
..+++++.|+.|++|....+ . ....+. .|...|++++|+|++++|++|+.||.|+|||+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~----------------~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSG----------------S---VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TSEEEEEETTEEEEEETTTC----------------C---EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEECCCeEEEeeCCCC----------------c---EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 44677889999999954332 1 122222 389999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
+++.+..+.+|...|.+++| ++.+|++++.||.|++||+......+..+.+|...|.+++|+|++. +|++|+.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence 99999999999999999999 5679999999999999999976667888999999999999999865 77799999999
Q ss_pred EEEECCCCeeeeEee---cCceEEEEecCCCEEEEEE---cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 003271 666 RYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 739 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s---~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las 739 (835)
++||+++++.+..+. ..+.+++|+|++..+++.+ .|+.|++||+.+++++..+. +...|.+++|+|++.+|++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 999999988877664 4589999999876666544 59999999999999998886 6788999999999999998
Q ss_pred E--e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 740 V--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 740 g--s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
+ + |+.|+|||+.++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 4 3 99999999988522 344457789999999999999999999999999999999998876
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.3e-32 Score=294.90 Aligned_cols=285 Identities=16% Similarity=0.231 Sum_probs=234.4
Q ss_pred CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEe--cCCCCCE
Q 003271 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTSKV 558 (835)
Q Consensus 481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l--~gH~~~V 558 (835)
....+.|+++. .+.+..+++++.++.|++|..... .....+..+ ..|...|
T Consensus 20 ~v~~i~~~p~~-----------~~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~v 72 (366)
T 3k26_A 20 PLFGVQFNWHS-----------KEGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADENF 72 (366)
T ss_dssp CEEEEEECTTC-----------CTTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCCE
T ss_pred ceEEEEEeccc-----------CCCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCcE
Confidence 45566666642 123445566666779999944322 112222222 2488999
Q ss_pred EEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCcee
Q 003271 559 ESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 559 ~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
++++|+|+ +.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|+|||+.+++. +
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~ 151 (366)
T 3k26_A 73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-V 151 (366)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-E
T ss_pred EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-E
Confidence 99999999 67999999999999999999999999999999999999999 899999999999999999998764 5
Q ss_pred EEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-------------------------------e
Q 003271 634 RTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-------------------------------F 679 (835)
Q Consensus 634 ~~~---~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-------------------------------~ 679 (835)
..+ ..|...|.+++|+|++. ++++++.|+.|++||+++++.... .
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 152 AIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 555 68999999999999876 667889999999999998754432 3
Q ss_pred ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe--------------EEEEEcCCCCCeEEEEEcCC--CCEEEEEe-C
Q 003271 680 KSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRLKLQGHKNQVHSVCWNTS--GEYLASVS-D 742 (835)
Q Consensus 680 ~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--------------~i~~l~~h~~~I~sl~fspd--g~~Lasgs-D 742 (835)
...+.+++|+ ++.+++++.|+.|++||+.+.. .+..+..|...|.+++|+|+ +.+|++++ |
T Consensus 231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d 308 (366)
T 3k26_A 231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV 308 (366)
T ss_dssp SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence 3458899998 6799999999999999998763 47788889999999999999 99999999 9
Q ss_pred CeEEEEEcCCCCCcc-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 743 ELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 743 g~I~IwDl~t~~~~~-~i~~l~~~--~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
|.|++||+.++.... .+..+..| ...|.+++|+|++++|++++.|+.|+|||+.
T Consensus 309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999875433 55567777 7899999999999999999999999999985
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=7.5e-32 Score=290.49 Aligned_cols=245 Identities=20% Similarity=0.363 Sum_probs=208.6
Q ss_pred EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEE
Q 003271 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 668 (835)
Q Consensus 591 ~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iw 668 (835)
..+.+|.+.|++++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4577899999999999999999999999999999997532 346888999999999999864 24588899999999999
Q ss_pred ECCCCe--eeeEe---ecCceEEEEecC--CCEEEEEEcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC------
Q 003271 669 SINNGS--CAGVF---KSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 733 (835)
Q Consensus 669 Dl~s~~--~~~~~---~~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspd------ 733 (835)
|+++++ .+..+ ...+.+++|+|+ +..|++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 33333 345899999997 7899999999999999998753 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEEcCCCc--
Q 003271 734 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 799 (835)
Q Consensus 734 -------g~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg---~~L~sgs~dg~I~IwDl~~~~-- 799 (835)
+++|++++ |+.|+|||++++.. ...+..+.+|...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 57899998 99999999987632 12566788999999999999985 789999999999999998743
Q ss_pred -E-EEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 800 -T-LTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 800 -~-~~l--~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
. ..+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1 223 46889999999999999999999999999995
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=295.65 Aligned_cols=275 Identities=16% Similarity=0.275 Sum_probs=227.1
Q ss_pred cEEEeccC---CCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC---CCEEEEEeCCCeEE
Q 003271 507 RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAV 580 (835)
Q Consensus 507 ~~l~tGs~---D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~ 580 (835)
.++++|+. |+.|++|...... ... ....+|...|++++|+|+ +.+|++|+.||.|+
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGD-----------------LKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSS-----------------EEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred eEEEecCccCCCcEEEEEeCCCCc-----------------ccc-eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 57788887 8999999443221 111 122378999999999998 69999999999999
Q ss_pred EEEcCCCe-EEEEeccCCCCeEEEEE------CCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCC----CeEEEE--
Q 003271 581 LWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD-- 647 (835)
Q Consensus 581 VWd~~t~~-~i~~l~~h~~~V~sv~f------spdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~----~V~sl~-- 647 (835)
+||+.+++ .+..+.+|...|.+++| +|++++|++++.|+.|++||+.++...+..+..|.. .|.+++
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 99999888 88889999999999955 688999999999999999999987755677765554 899998
Q ss_pred --EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEec---CCCEEEEEEcCCcEEEEECCCCeEEEEE--
Q 003271 648 --FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL-- 718 (835)
Q Consensus 648 --fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp---~~~~ll~~s~dg~I~IwDl~t~~~i~~l-- 718 (835)
|+|++. ++++++.|+.|++||+++++..... ...+.+++|+| ++..+++++.|+.|++||+++++.+..+
T Consensus 174 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 174 NAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred eccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 667765 7778999999999999998876544 35699999999 8999999999999999999876544333
Q ss_pred ---cCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCc----------------ceEEEeecCCCceEEEEEeCC
Q 003271 719 ---QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 719 ---~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~----------------~~i~~l~~~~~~V~sv~fspd 777 (835)
.+|...|.+++|+|++. +|++++ |+.|++||++..... ..+..+..|...|.+++|+|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 38999999999999998 788888 999999999875432 467788899999999999999
Q ss_pred CCEEE-EEEcCCeEEEEEcCCCcE
Q 003271 778 FPSLL-VIGCYETLELWNMTENKT 800 (835)
Q Consensus 778 g~~L~-sgs~dg~I~IwDl~~~~~ 800 (835)
+++|+ +++.|+.|+|||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 99998 799999999999987653
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-31 Score=291.99 Aligned_cols=249 Identities=21% Similarity=0.320 Sum_probs=215.5
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEE
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~I 623 (835)
+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +.+|++++.||.|+|
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 66778889999999999999987 999999999999999
Q ss_pred EecCCCCc-eeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeee--Ee---ecCceEEEEec-----
Q 003271 624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAG--VF---KSGATQMRFQP----- 690 (835)
Q Consensus 624 WDl~t~~~-~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~---~~~i~~l~fsp----- 690 (835)
||+.++.. .+..+..|...|.+++|+|+ +. ++++++.|+.|++||+++..... .+ ...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99998752 46777889999999999998 54 77799999999999998874332 22 24589999999
Q ss_pred --------CCCEEEEEEcCCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003271 691 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 691 --------~~~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~I~sl~fspd---g~~Lasgs-Dg~I~IwDl~t~~ 754 (835)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|+|||++++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899999999999999999865 355678889999999999999 89999999 9999999999864
Q ss_pred CcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 755 KGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 755 ~~~~i~~l--~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
.......+ ..+...|.+++|+|++.+|++++.|+.|++||+..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 32233333 33788999999999999999999999999999873
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=279.72 Aligned_cols=265 Identities=16% Similarity=0.209 Sum_probs=228.3
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
+.++++|+.|+.|++|.... ......+..|...|.+++|+|++++|++|+.|+.|++|++.
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 89 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDD-------------------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF 89 (313)
T ss_dssp TTEEEEEETTSEEEEEEESS-------------------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCCcEEEEECCC-------------------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence 46899999999999994322 13456677899999999999999999999999999999986
Q ss_pred CC---eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 586 SF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 586 t~---~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
.. +.+..+.+|...|.+++| ++.+|++++.|+.|++|| . ......+..|...|.+++|+|....++++++.|
T Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 164 (313)
T 3odt_A 90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASAD 164 (313)
T ss_dssp CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence 53 667788899999999999 577999999999999999 2 335778888999999999998445578899999
Q ss_pred CcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271 663 SEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738 (835)
Q Consensus 663 g~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La 738 (835)
+.|++||. .+....+. ..+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++. |+
T Consensus 165 ~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~ 240 (313)
T 3odt_A 165 KTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV 240 (313)
T ss_dssp SCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred CCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence 99999994 34444433 4589999999977 99999999999999999999999999999999999999995 55
Q ss_pred EEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE
Q 003271 739 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 802 (835)
Q Consensus 739 sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 802 (835)
+++ |+.|++||+.++ ..+..+..|...|.+++|+|++. +++++.|+.|++||+.+++...
T Consensus 241 ~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 241 SCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 666 999999999988 78888889999999999999998 7789999999999999887653
No 90
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-31 Score=299.70 Aligned_cols=276 Identities=14% Similarity=0.231 Sum_probs=233.2
Q ss_pred CEEEEEEeCCCCEE-EEEeCCCeEEEEEcCCCe----EEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCC
Q 003271 557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD 630 (835)
Q Consensus 557 ~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~t~~----~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~ 630 (835)
....++++|+...+ ++++.||.|+||++.... .+..+.+|.+.|++++|+| ++.+|++|+.||.|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 45568899886544 457889999999996643 2345778999999999999 89999999999999999999864
Q ss_pred ------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--e---cCceEEEEecCCCEEEEEE
Q 003271 631 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K---SGATQMRFQPRLGRILAAA 699 (835)
Q Consensus 631 ------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~---~~i~~l~fsp~~~~ll~~s 699 (835)
..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+ . ..+.+++|+|++..|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 3467888999999999999998778999999999999999999988777 3 4589999999999999999
Q ss_pred cCCcEEEEECCCCeEEEEE-cCCCCC-eEEEEEcCCCCEEEEE---e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 700 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 700 ~dg~I~IwDl~t~~~i~~l-~~h~~~-I~sl~fspdg~~Lasg---s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEE
Confidence 9999999999999999988 678776 8999999999999998 5 89999999988743222222 24667899999
Q ss_pred EeCCCCEEEEEE-cCCeEEEEEcCCCc--EEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 774 FHPTFPSLLVIG-CYETLELWNMTENK--TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 774 fspdg~~L~sgs-~dg~I~IwDl~~~~--~~~l--~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|+|++.+|++++ .|+.|++||+.+++ ...+ ..|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997665 69999999999887 3333 346699999999999988775 567899995
No 91
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.6e-31 Score=293.15 Aligned_cols=265 Identities=15% Similarity=0.165 Sum_probs=217.1
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~ 585 (835)
.++++|+.|+.|++|...... ......+.+|.+.|.+++|+| ++.+|++++.|+.|++||+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 689999999999999543221 112223357999999999999 78999999999999999998
Q ss_pred CCeEEEEecc---CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 586 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 586 t~~~i~~l~~---h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
+ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||+. + ..+..+..|...|.+++|+|++..++++|+.|
T Consensus 150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 6 44555543 44889999999999999999999999999995 3 35788889999999999999988788999999
Q ss_pred CcEEEEECCC----CeeeeEee--cCceEEEEec-CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-------------
Q 003271 663 SEIRYWSINN----GSCAGVFK--SGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK------------- 722 (835)
Q Consensus 663 g~I~iwDl~s----~~~~~~~~--~~i~~l~fsp-~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------------- 722 (835)
+.|++||+++ +.++..+. ..+.+++|+| ++..|++++.|+.|++||+++++....+.+|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999999987 55555543 5599999999 99999999999999999999876655555432
Q ss_pred ----CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 723 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 723 ----~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
..+..++|+|++++ +++ |+.|+|||+.++ +++..+.. +...+..++|+|++++|++++ |+.|+|||+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 23444666666666 444 999999999988 67777776 456777889999999999997 899999998
Q ss_pred CC
Q 003271 796 TE 797 (835)
Q Consensus 796 ~~ 797 (835)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.7e-32 Score=294.29 Aligned_cols=244 Identities=19% Similarity=0.328 Sum_probs=202.8
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEE
Q 003271 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 669 (835)
Q Consensus 592 ~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwD 669 (835)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|+++ ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 45778899999999999863 234788999999999999
Q ss_pred CCCCe--eeeEee---cCceEEEEecC--CCEEEEEEcCCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCC------
Q 003271 670 INNGS--CAGVFK---SGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 733 (835)
Q Consensus 670 l~s~~--~~~~~~---~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~fspd------ 733 (835)
+++++ ....+. ..+.+++|+|+ +..|++++.|+.|++||++... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 344433 45899999998 6789999999999999998753 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEEcCC
Q 003271 734 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 734 -----------g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg----~~L~sgs~dg~I~IwDl~~ 797 (835)
+.+|++++ |+.|++||++......++..+.+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46888888 9999999997653334677788999999999999986 7899999999999999876
Q ss_pred C---c--EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 798 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 798 ~---~--~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
. . ...+..|...|.+++|+|++.+||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 2 1 124567899999999999999999999999999996
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.8e-30 Score=285.57 Aligned_cols=312 Identities=15% Similarity=0.264 Sum_probs=224.8
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEE-----EecCCCCCEEEEEEeC-CCCEEEEEeCCCeE
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~-----~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I 579 (835)
..++++|+.|+.|++|.......... ....... ...+|...|++++|+| ++.+|++++.||.|
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSY-----------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSC-----------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccce-----------EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 37899999999999996554422211 0111111 1246999999999999 78899999999999
Q ss_pred EEEEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEE
Q 003271 580 VLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll 656 (835)
++||+.+++.+..+. +...+.++.|++. +.+|++++.|+.|++||+.++.. +..+..|...|.+++|+|++..++
T Consensus 125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEE
T ss_pred EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999988886 7788999999985 45999999999999999998764 778888999999999999998889
Q ss_pred EEEeCCCcEEEEECCCCe-eeeE------------------eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271 657 CSCDNNSEIRYWSINNGS-CAGV------------------FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 717 (835)
Q Consensus 657 ~sgs~Dg~I~iwDl~s~~-~~~~------------------~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~ 717 (835)
++++.||.|++||++++. ++.. ....+.+++|+|++.++++++.|+.|++||+++++....
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence 999999999999998765 2222 234588999999999999999999999999998876544
Q ss_pred EcCCC------CCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271 718 LQGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 791 (835)
Q Consensus 718 l~~h~------~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~ 791 (835)
+..+. .....+.....+.+++++.++.|++||+.++ ..+..+.+|...|.+++|+|++.+|++++.||.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 43221 1222233344556666666999999999988 78889999999999999999999999999999999
Q ss_pred EEEcCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003271 792 LWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 835 (835)
Q Consensus 792 IwDl~~~~~~~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~IWd 835 (835)
+||+.+++.+......... ..+.+ ....+.+++.|+.|++|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 360 AWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEEECC---------------------------------------
T ss_pred EEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 9999998876432222222 22233 334566778899999995
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-32 Score=297.95 Aligned_cols=279 Identities=14% Similarity=0.169 Sum_probs=217.0
Q ss_pred CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003271 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (835)
Q Consensus 499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~ 578 (835)
...+.....++++|+.|+.|++|..... .+..+..+.+|.+.|++++|+|++++|++++.|+.
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~ 78 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN 78 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence 3334445579999999999999943211 22455677899999999999999999999999999
Q ss_pred EEEEEcCCCe---EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeec-CCCCeEEEEEcCCC
Q 003271 579 AVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSK 652 (835)
Q Consensus 579 I~VWd~~t~~---~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~-h~~~V~sl~fsp~g 652 (835)
|+|||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+.++.. ....+.. |...|.+++|+|++
T Consensus 79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 9999999877 6777889999999999999999999999999999999998653 3566666 99999999999997
Q ss_pred CcEEEEEeCCCcEEEEECCC------------------CeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCC
Q 003271 653 EDLLCSCDNNSEIRYWSINN------------------GSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQ 712 (835)
Q Consensus 653 ~~ll~sgs~Dg~I~iwDl~s------------------~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~ 712 (835)
. +|++++.|+.|++||+.. ++++..+ ...+.+++|+|++.+|++++.|+.|++||++++
T Consensus 159 ~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 159 V-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp S-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred C-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 6 777999999999999853 3344333 234899999999999999999999999999988
Q ss_pred eE----EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC---------------------------c-----
Q 003271 713 VC----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------G----- 756 (835)
Q Consensus 713 ~~----i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~---------------------------~----- 756 (835)
+. +..+.+|...|.+++|+|++++|++++++.+.+|+...... .
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (377)
T 3dwl_C 238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSF 317 (377)
T ss_dssp TSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------
T ss_pred CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccc
Confidence 76 77888899999999999999999999966666887752210 0
Q ss_pred ----ceEEE-------------eecCCCceEEEEEeCCCC----EEEEEEcCCeEEEEEc
Q 003271 757 ----ECIHE-------------LSCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM 795 (835)
Q Consensus 757 ----~~i~~-------------l~~~~~~V~sv~fspdg~----~L~sgs~dg~I~IwDl 795 (835)
..+.. ...|...|.++.+.+... .|++++.||.|+|||+
T Consensus 318 ~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 318 TALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00000 112888999999766543 5999999999999985
No 95
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.5e-31 Score=300.92 Aligned_cols=271 Identities=15% Similarity=0.208 Sum_probs=217.2
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~ 585 (835)
.+|++|+.|+.|++|...... ...+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||++
T Consensus 133 ~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 133 STVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp TCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 689999999999999443221 122344678999999999998 78999999999999999998
Q ss_pred CCeEEEEecc--CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271 586 SFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (835)
Q Consensus 586 t~~~i~~l~~--h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg 663 (835)
+......... +...+.+++|+|++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..++++|+.|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~ 273 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence 7665444433 3446789999999999999999999999999753 36778899999999999999998999999999
Q ss_pred cEEEEECCCCeeeeEe------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC------CeEEEEEc
Q 003271 664 EIRYWSINNGSCAGVF------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCWN 731 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~------~I~sl~fs 731 (835)
.|++||+++.+....+ ...+.+++|+|++.+|++++.|+.|+|||+.++.+...+..|.. .+..+.|+
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 9999999887654332 34588999999999999999999999999999888777766543 23345677
Q ss_pred CCCCEEEEEe-------------CCeEEEEEcCCCCCcceEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 732 TSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 732 pdg~~Lasgs-------------Dg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv-~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
+++.+++++. ++.|++||..++ ..+..+ ..|...|.++ +|+|++.+|++++ |+.|+|||++
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 7777776654 247999999988 566655 4677778877 6999999887765 8899999999
Q ss_pred CCcE
Q 003271 797 ENKT 800 (835)
Q Consensus 797 ~~~~ 800 (835)
+++.
T Consensus 430 ~gk~ 433 (435)
T 4e54_B 430 EART 433 (435)
T ss_dssp ----
T ss_pred cCee
Confidence 8765
No 96
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.2e-30 Score=273.29 Aligned_cols=268 Identities=18% Similarity=0.300 Sum_probs=226.6
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (835)
++|++| .|++|++|....+ .......+.+|...|++++|+|++++||+|+.||+|+|||+++
T Consensus 37 ~~lAvg-~D~tV~iWd~~tg-----------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp SEEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 367776 5999999944322 1122334568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
++.+..+.+|...+.++.+ ++..|++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|+
T Consensus 99 ~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 175 (318)
T ss_dssp TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence 9999999999999887766 4569999999999999999988877888999999999999999976 677999999999
Q ss_pred EEECCCCeeee-------EeecCceEEEEecCCCEEE---EEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 667 YWSINNGSCAG-------VFKSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 667 iwDl~s~~~~~-------~~~~~i~~l~fsp~~~~ll---~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
+||+++++... .....+..+.+++.+..++ +++.++.|++||........... +...+..++|++++..
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence 99998765321 1234588899999876554 33457899999999988776665 6778999999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 737 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 737 Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
+++++ |+.|+|||++++ +++.++.+|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 87754 889999999988 7889999999999999999999999999999999999987653
No 97
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=4.2e-30 Score=289.66 Aligned_cols=284 Identities=10% Similarity=0.066 Sum_probs=241.8
Q ss_pred eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-----EeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADR 619 (835)
Q Consensus 545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-----~l~~h~~~V~sv~fspdg~~Latgs~Dg 619 (835)
+..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+. .+.+|...|.+++|++++.++++++.|+
T Consensus 113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 34455555554 46699999988888888889999999999999887 3457889999999999999999999999
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEE
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILA 697 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~ 697 (835)
.|++||+.+++. +..+..|...+.+++|+|+++.++++++.|+.|++||+++++.+..+.. .+..++|+|+++.+++
T Consensus 192 ~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 192 AVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEE
Confidence 999999998664 6777789999999999999988888888899999999999988877653 3788999999999999
Q ss_pred EEc--------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271 698 AAI--------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 698 ~s~--------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg-s-Dg~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
++. |+.|++||+.+++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++ +.+..+. +..
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~ 345 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFD 345 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSS
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCC
Confidence 884 7899999999998777664 56689999999999866554 5 999999999876 5555554 677
Q ss_pred ceEEEEEeCCCCEEEEEEc---------------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcE
Q 003271 768 KFHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCV 831 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~---------------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~-DG~V 831 (835)
.+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i 425 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQI 425 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeE
Confidence 8999999999999998887 46999999999998865555678999999999999988875 9999
Q ss_pred EEeC
Q 003271 832 KIWK 835 (835)
Q Consensus 832 ~IWd 835 (835)
+||+
T Consensus 426 ~v~~ 429 (433)
T 3bws_A 426 RVYR 429 (433)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-30 Score=285.10 Aligned_cols=248 Identities=20% Similarity=0.367 Sum_probs=212.5
Q ss_pred eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcE
Q 003271 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 665 (835)
Q Consensus 588 ~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I 665 (835)
+.+..+.+|.+.|++++|+|++++|++|+.||.|+|||+.... ..+..+.+|...|.+++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998433 2456788999999999998762 3478899999999
Q ss_pred EEEECCCCe--eeeEee---cCceEEEEecC--CCEEEEEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcC----
Q 003271 666 RYWSINNGS--CAGVFK---SGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 732 (835)
Q Consensus 666 ~iwDl~s~~--~~~~~~---~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fsp---- 732 (835)
++||+.+++ .+..+. ..+.+++|+|+ +..+++++.|+.|++||+++. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999986 444443 45999999999 899999999999999999987 34556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEEcCCCCCc-ceEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEEcCCC
Q 003271 733 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 733 ---------dg~~Lasgs-Dg~I~IwDl~t~~~~-~~i~~l~~~~~~V~sv~fspd---g~~L~sgs~dg~I~IwDl~~~ 798 (835)
++.+|++++ |+.|++||++++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|+|||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999999 999999999876432 355678889999999999999 899999999999999999987
Q ss_pred c----EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 799 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 799 ~----~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
. .. ....|...|++++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 4 22 2334889999999999999999999999999996
No 99
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5e-30 Score=283.90 Aligned_cols=275 Identities=14% Similarity=0.157 Sum_probs=217.0
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEe
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWD 625 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWD 625 (835)
.+..+.+|.+.|+|++|+|||++|++|+.|+ ++|||+++++.+..... ..+..++|.++++.+ ++++.|++|+|||
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 3445688999999999999999999998764 78999998877765433 258888999988877 5677789999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeecCceEEEEecCCCEEEE--EEcCC
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKSGATQMRFQPRLGRILA--AAIEN 702 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~~i~~l~fsp~~~~ll~--~s~dg 702 (835)
+.+++. +..+. |...|.++.|+++. ++ ++. |+.|++||+.++ +.+..+......+++++ ..+++ ++.+|
T Consensus 88 ~~~~~~-~~~~~-~~~~v~~v~~~~~~--~~-~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g 159 (355)
T 3vu4_A 88 DVKKQD-VSRIK-VDAPVKDLFLSREF--IV-VSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLG 159 (355)
T ss_dssp TTTTEE-EEEEE-CSSCEEEEEECSSE--EE-EEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTT
T ss_pred CCCCcE-EEEEE-CCCceEEEEEcCCE--EE-EEE-cCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCc
Confidence 998764 55554 67799999999762 33 333 789999999988 76666655555566777 56666 46789
Q ss_pred cEEEEECCCCe----------------EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCe-EEEEEcCCCCCcceEEEee-
Q 003271 703 YISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS- 763 (835)
Q Consensus 703 ~I~IwDl~t~~----------------~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~-I~IwDl~t~~~~~~i~~l~- 763 (835)
.|++||++++. ++..+.+|...|.+++|+|+|.+|++++ |++ |+|||++++ .++..+.
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~ 236 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRR 236 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEEC
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEc
Confidence 99999999865 2677889999999999999999999999 998 999999988 7888887
Q ss_pred c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE---Ee--------------------c-cCCCCeeEEEEeCC
Q 003271 764 C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAASTV 818 (835)
Q Consensus 764 ~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l--------------------~-~h~~~V~~la~spd 818 (835)
+ |...|.+++|+|++.+|++++.|+.|+|||+...... .+ . .+......++|+++
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 4 8999999999999999999999999999999765321 11 0 11223477999999
Q ss_pred CCEEEEEECCCcEEEeC
Q 003271 819 NGMVASASHDKCVKIWK 835 (835)
Q Consensus 819 g~~LaSgs~DG~V~IWd 835 (835)
+++|++++.||.+++|+
T Consensus 317 ~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEE
Confidence 99999999999999985
No 100
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5e-30 Score=291.03 Aligned_cols=279 Identities=18% Similarity=0.370 Sum_probs=225.2
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (835)
+.++++|+.|+.|++|.... ...+..+.+|.+.|++++| ++++|++|+.||.|+|||+.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~-------------------~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNT-------------------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSEEEEEESSSCEEEEESSS-------------------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCEEEEEeCCCeEEEEeCCC-------------------CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 47899999999999994322 2345678899999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce--eEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg 663 (835)
+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.++... ...+.+|...|.+++|. + .++++|+.||
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEEEEEETTS
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEEEEEeCCC
Confidence 9999999999999999999974 59999999999999999986642 26778899999999994 3 4788999999
Q ss_pred cEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271 664 EIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg 740 (835)
.|++||+++++++..+..+ +.++.+ ++..+++++.|+.|++||+++++++..+.+|...|.+++| ++.+|+++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 9999999999998887643 666767 4689999999999999999999999999999999999998 78899999
Q ss_pred e-CCeEEEEEcCCCCC------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEE
Q 003271 741 S-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 813 (835)
Q Consensus 741 s-Dg~I~IwDl~t~~~------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~l 813 (835)
+ ||.|++||+.++.. ..++..+..|...|.+++| ++.+|++++.||.|++||+.+............+.++
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 430 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTY 430 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccce
Confidence 9 99999999976531 1278889999999999999 7788999999999999999887766444444455555
Q ss_pred EEe
Q 003271 814 AAS 816 (835)
Q Consensus 814 a~s 816 (835)
.|.
T Consensus 431 ~~~ 433 (435)
T 1p22_A 431 TYI 433 (435)
T ss_dssp ---
T ss_pred eee
Confidence 554
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.2e-30 Score=287.49 Aligned_cols=286 Identities=15% Similarity=0.271 Sum_probs=227.4
Q ss_pred CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-----
Q 003271 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST----- 555 (835)
Q Consensus 481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~----- 555 (835)
....+.|++++ .++++|+.|+.|++|........ .......+.....+.+|.
T Consensus 30 ~V~~v~~s~~g---------------~~la~g~~dg~v~iw~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~~~~ 86 (447)
T 3dw8_B 30 IISTVEFNHSG---------------ELLATGDKGGRVVIFQQEQENKI--------QSHSRGEYNVYSTFQSHEPEFDY 86 (447)
T ss_dssp SEEEEEECSSS---------------SEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEG
T ss_pred cEEEEEECCCC---------------CEEEEEcCCCeEEEEEecCCCCC--------CcccccceeEecccccccccccc
Confidence 45566666654 78999999999999965543211 011223455677888998
Q ss_pred -------CCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCCCeEE------------------------------------
Q 003271 556 -------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK------------------------------------ 590 (835)
Q Consensus 556 -------~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~i------------------------------------ 590 (835)
+.|++++|+|++ .+|++++.|+.|+|||+.++...
T Consensus 87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
T 3dw8_B 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA 166 (447)
T ss_dssp GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence 889999999998 79999999999999998764432
Q ss_pred ---EE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE-------EeecCCCCeEEEEEcCCCCcEEEEE
Q 003271 591 ---ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 591 ---~~-l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~-------~~~~h~~~V~sl~fsp~g~~ll~sg 659 (835)
.. ..+|...|++++|+|++++|++| .|+.|+|||+.+....+. .+.+|...|.+++|+|++..+|++|
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~ 245 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS 245 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence 12 36899999999999999999998 899999999985443343 3568999999999999985688899
Q ss_pred eCCCcEEEEECCCCee----eeEeec---------------CceEEEEecCCCEEEEEEcCCcEEEEECCC-CeEEEEEc
Q 003271 660 DNNSEIRYWSINNGSC----AGVFKS---------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQ 719 (835)
Q Consensus 660 s~Dg~I~iwDl~s~~~----~~~~~~---------------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i~~l~ 719 (835)
+.||.|++||+++++. +..+.. .+.+++|+|++.+|++++. +.|++||+++ ++++..+.
T Consensus 246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~ 324 (447)
T 3dw8_B 246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ 324 (447)
T ss_dssp ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence 9999999999998876 455543 6889999999999999988 9999999997 78888888
Q ss_pred CCCCC---------------eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--------------------
Q 003271 720 GHKNQ---------------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------- 763 (835)
Q Consensus 720 ~h~~~---------------I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-------------------- 763 (835)
+|... +..++|+|++.+|++++ |+.|+|||+.++. .+ .+.
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~ 400 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR---DI-TLEASRENNKPRTVLKPRKVCAS 400 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC---EE-EEECCSTTCCTTCBCCCCCEECS
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc---ce-eeeecccccccccccCCcccccc
Confidence 77532 33499999999999999 9999999998873 22 211
Q ss_pred -------------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 764 -------------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 764 -------------~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
.....|..++|+|++.+|++++.++ +++|..+
T Consensus 401 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 401 GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2235688999999999888887765 8888643
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-31 Score=296.54 Aligned_cols=262 Identities=15% Similarity=0.212 Sum_probs=216.8
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCC---CCce-eEE
Q 003271 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT 635 (835)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t---~~~~-~~~ 635 (835)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +... ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677787777654 487 456888888 89999999999999 999999999999999999876 3311 122
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEee---------------cCceEEE--EecCCCEE
Q 003271 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK---------------SGATQMR--FQPRLGRI 695 (835)
Q Consensus 636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---s~~~~~~~~---------------~~i~~l~--fsp~~~~l 695 (835)
...|...|.+++|+|++. +|++++.||.|++||+. +++....+. ..+.++. +++++..+
T Consensus 107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 225999999999999866 77799999999999995 554444332 1133444 55778999
Q ss_pred EEEEcCCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-cCCCceEE
Q 003271 696 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS 771 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-~~~~~V~s 771 (835)
++++.|+.|++||+++++++..+.+ |...|.+++|+|++.+|++++ |+.|++||++++ .++..+. .|...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 889999999999999999999 999999999987 7777775 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEEcCCCcEE-Eecc--------------------------CCCCeeEEEEeCCCC
Q 003271 772 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG 820 (835)
Q Consensus 772 v~fsp----dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~--------------------------h~~~V~~la~spdg~ 820 (835)
++|+| ++.+|++++.|+.|+|||+.+++++ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96664 5779999999999999999998866 3322 66779999999 788
Q ss_pred EEEEEECCCcEEEeC
Q 003271 821 MVASASHDKCVKIWK 835 (835)
Q Consensus 821 ~LaSgs~DG~V~IWd 835 (835)
+|++|+.||.|++||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999996
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-29 Score=284.42 Aligned_cols=270 Identities=16% Similarity=0.183 Sum_probs=221.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe---EEEEecc-------------------------------------
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 595 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~i~~l~~------------------------------------- 595 (835)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977666 47899999999888 5555543
Q ss_pred -----------------CCCCeEEEEECCCCCEE-EEEECCCeEEEEecC--CCCceeEEee--cCCCCeEEEEEcCCCC
Q 003271 596 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 653 (835)
Q Consensus 596 -----------------h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~--t~~~~~~~~~--~h~~~V~sl~fsp~g~ 653 (835)
|.+.|++++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 889999999999998 6553 55554 6778999999999976
Q ss_pred cEEEEEeCCCcEEEEECCCCeeee----E---eecCceEEEEecC---CCEEEEEEcCCcEEEEECCCCeEEEE-EcCCC
Q 003271 654 DLLCSCDNNSEIRYWSINNGSCAG----V---FKSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 722 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s~~~~~----~---~~~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~~i~~-l~~h~ 722 (835)
+|++++.+|.|++|++.+++... . ....+.+++|+|+ +.+|++++.|+.|++||++++.++.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 66688889999999998876543 3 3356899999999 88999999999999999999888777 55899
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-------------------------cCCCceEEEEEeC
Q 003271 723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 776 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-------------------------~~~~~V~sv~fsp 776 (835)
..|.+++|+ ++.+|++++ |+.|+|||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999988 5555554 2345789999999
Q ss_pred CCCEEEEEE-cCCeEEEEEc--CCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEe
Q 003271 777 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 834 (835)
Q Consensus 777 dg~~L~sgs-~dg~I~IwDl--~~~---~~~-~l~~h~~~V~~la~spdg~~LaSgs~-------DG~V~IW 834 (835)
++++|++++ .++.|+||++ .++ +.+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 444 45566 889999999954 5555433 4557777
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=5.9e-30 Score=286.93 Aligned_cols=275 Identities=16% Similarity=0.197 Sum_probs=223.8
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~ 585 (835)
.++++|+.|+.|.+|...... .....+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred EEEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 355568899999999542221 00112345679999999999999 99999999999999999999
Q ss_pred CC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEe--ecCCCCeEEEEEcCCCCcE
Q 003271 586 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 586 t~-------~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~--~~h~~~V~sl~fsp~g~~l 655 (835)
++ +.+..+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+++. +..+ ..|...|.+++|+|++. +
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGA-L 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSS-C
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCC-E
Confidence 87 5678888999999999999998 6999999999999999998764 6666 78999999999999876 5
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEe-ec----CceEEEEecCCCEEEEE---EcCCcEEEEECCCCeE-EEEE-cCCCCCe
Q 003271 656 LCSCDNNSEIRYWSINNGSCAGVF-KS----GATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQV 725 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~~~~~~~-~~----~i~~l~fsp~~~~ll~~---s~dg~I~IwDl~t~~~-i~~l-~~h~~~I 725 (835)
|++++.|+.|++||+++++.+..+ .. .+..+.|+|++..++++ +.|+.|++||+++... +... ..|...|
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 668889999999999999988877 32 27889999998888888 5899999999998643 2222 2477889
Q ss_pred EEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 726 HSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 726 ~sl~fspdg~~Las-gs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+. +...|.+++|+|++.++++ .++.+++|++.++.+.
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999999999865 54 99999999998742 22333333 5689999999999987654 5679999999887654
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2e-29 Score=286.26 Aligned_cols=243 Identities=19% Similarity=0.326 Sum_probs=208.8
Q ss_pred EEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCC---------CceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 591 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 591 ~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~---------~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
.....|.+.|++++|+|+ +.+|++++.||.|+|||+.+. ...+..+.+|...|.+++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 444579999999999997 789999999999999999862 2346788899999999999999887888999
Q ss_pred CCCcEEEEECCCCee-------eeEe---ecCceEEEEec-CCCEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeE
Q 003271 661 NNSEIRYWSINNGSC-------AGVF---KSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 726 (835)
Q Consensus 661 ~Dg~I~iwDl~s~~~-------~~~~---~~~i~~l~fsp-~~~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~ 726 (835)
.||.|++||+..+.. ...+ ...+.+++|+| ++..|++++.|+.|++||+++. ..+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 2222 34589999999 6678889999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCC------
Q 003271 727 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 797 (835)
Q Consensus 727 sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~------ 797 (835)
+++|+|++. +|++++ |+.|++||+++.. ..+..+..|...|.+++|+|+++ +|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677888 9999999999743 56778888999999999999995 688999999999999987
Q ss_pred --------CcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003271 798 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 835 (835)
Q Consensus 798 --------~~~~-~l~~h~~~V~~la~spdg~-~LaSgs~DG~V~IWd 835 (835)
..++ ...+|...|++++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2333 6778999999999999999 999999999999996
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=1.9e-29 Score=280.55 Aligned_cols=275 Identities=12% Similarity=0.137 Sum_probs=209.3
Q ss_pred CcEEEeccCCC-------CEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe----
Q 003271 506 DRFVDDGSLDD-------NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG---- 574 (835)
Q Consensus 506 ~~~l~tGs~D~-------~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs---- 574 (835)
..+|++|+.|. .|++|.......... ..........+.+|.+.|.|++++ +..+++|.
T Consensus 26 g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~---------~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~ 94 (365)
T 4h5i_A 26 DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK---------EQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS 94 (365)
T ss_dssp TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH---------HHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred CcEEEEECCCccccCCCCEEEEEEEcCCCccee---------eeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence 37888887544 488995433321100 011112234578999999998876 45676654
Q ss_pred -------CCCeEEEEEcCCCeE----EEEe-----ccCCCCeEEEEECCCCCEEEEEE--CCCeEEEEecCCCCceeEEe
Q 003271 575 -------HDKKAVLWCTESFTV----KSTL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 575 -------~Dg~I~VWd~~t~~~----i~~l-----~~h~~~V~sv~fspdg~~Latgs--~Dg~I~IWDl~t~~~~~~~~ 636 (835)
.|+.|++|++.+... .... ..+...+.+|+|+|||++|++++ .|++|+|||+.+... +..+
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~ 173 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEI 173 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEe
Confidence 477899998765421 1221 23456799999999999987655 689999999998764 4444
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCC----cEEEE
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIEN----YISIL 707 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg----~I~Iw 707 (835)
.|...|.+++|+|++. ++++++ ++.+++|+..++..+.... ..+.+++|+|++..+++++.++ .+++|
T Consensus 174 -~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp -ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred -CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 4778899999999987 566776 5567777777776654322 3388999999999999999887 58889
Q ss_pred ECCCCeE----EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEE
Q 003271 708 DVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 708 Dl~t~~~----i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L 781 (835)
|+..... ...+.+|...|++++|+|+|++|++|+ |++|+|||+.++ +++..+ .+|...|++++|+|++++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEE
Confidence 9876643 346778999999999999999999999 999999999987 777774 7899999999999999999
Q ss_pred EEEEcCCeEEEEEcCCC
Q 003271 782 LVIGCYETLELWNMTEN 798 (835)
Q Consensus 782 ~sgs~dg~I~IwDl~~~ 798 (835)
++++.|++|+|||+..+
T Consensus 328 aS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEeCCCeEEEEEcCCC
Confidence 99999999999999654
No 107
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-30 Score=283.54 Aligned_cols=263 Identities=9% Similarity=0.024 Sum_probs=210.8
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---------CCCce
Q 003271 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 632 (835)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---------t~~~~ 632 (835)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344578899999999999999999999888876 567888899988 9999999999999765 33322
Q ss_pred eEEeecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271 633 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
......|...|.+++|+| +++ ++++++.||.|++||+++++++.... ..+.+++|+|++..+++|+.|+.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233446778999999999 865 77799999999999999998876553 34889999999999999999999999
Q ss_pred EECCCCeEE-EEEcC-CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCce--EEEEEeCCCCEEE
Q 003271 707 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 782 (835)
Q Consensus 707 wDl~t~~~i-~~l~~-h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V--~sv~fspdg~~L~ 782 (835)
||+++++.+ ..+.. |...|.+++|+|++.+|++++|+.|++||+++......+..+..+...+ .+++|+|++++|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999874433333322233333 4699999999999
Q ss_pred EEEc-CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeC---CCCEEEEEECCCcEEEe
Q 003271 783 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 834 (835)
Q Consensus 783 sgs~-dg~I~IwDl~~~~~~-~l~~h~~~V~~la~sp---dg~~LaSgs~DG~V~IW 834 (835)
+++. ++.|+||++...... .. ..+..++|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999999665432 22 5567778887 77788888888888775
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.3e-29 Score=269.46 Aligned_cols=260 Identities=13% Similarity=0.129 Sum_probs=220.4
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEc-
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT- 584 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~- 584 (835)
.++++|+.|+.|++|..... ........+.+|...|++++|+|+++ +|++|+.||.|++||+
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp TEEEEEETTSEEEEEEEETT----------------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CEEEEEcCCCeEEEEEeCCC----------------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 68899999999999944322 11122344558999999999999999 9999999999999999
Q ss_pred CCCeEEEEecc--CCCCeEEEEECCCCCEEEEEECCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCC
Q 003271 585 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 585 ~t~~~i~~l~~--h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
.+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+.+ ... +..+. |...|.+++|++++
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE-
T ss_pred cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc-
Confidence 87765 67778 999999999999 99999999999999999986 442 34444 88999999999885
Q ss_pred cEEEEEeCCCcEEEEECCC-Ceee-e----EeecCceEEEEec-CCCEEEEEEcCCcEEEEECCCC------eEEEEEcC
Q 003271 654 DLLCSCDNNSEIRYWSINN-GSCA-G----VFKSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQG 720 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s-~~~~-~----~~~~~i~~l~fsp-~~~~ll~~s~dg~I~IwDl~t~------~~i~~l~~ 720 (835)
+++++.|+.|++||+++ +... . .....+.+++|+| ++..+++++.||.|++||++.. +....+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 77889999999999998 5432 1 1234589999999 9999999999999999999876 77777877
Q ss_pred CCC---------CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcCCe
Q 003271 721 HKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET 789 (835)
Q Consensus 721 h~~---------~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~dg~ 789 (835)
|.. .|.+++|+|++.+|++++ ||.|++||+.++ ..+..+..| ...|.+++ |++.+|++++.|+.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 765 999999999999999999 999999999987 788889888 99999999 99999999999998
Q ss_pred -EEEEE
Q 003271 790 -LELWN 794 (835)
Q Consensus 790 -I~IwD 794 (835)
.+.|.
T Consensus 316 ~~~~~~ 321 (342)
T 1yfq_A 316 FKTNAA 321 (342)
T ss_dssp HHHCSS
T ss_pred cccccc
Confidence 44444
No 109
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=303.39 Aligned_cols=254 Identities=9% Similarity=0.056 Sum_probs=197.4
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCeE----EEEeccCCCCeEEEEECCC------CCEEEEEECCCeEEEEecCCCCc--
Q 003271 564 SPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 631 (835)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~----i~~l~~h~~~V~sv~fspd------g~~Latgs~Dg~I~IWDl~t~~~-- 631 (835)
+|++++|++++.|++|+|||+.+++. ...+.+|.+.|.+|+|+|+ +.+||+++.||+|+|||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 34444555567889999999987653 2456678899999999996 57999999999999999986542
Q ss_pred --------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee---cCceEE--EEecCC-CEEE
Q 003271 632 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK---SGATQM--RFQPRL-GRIL 696 (835)
Q Consensus 632 --------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~---~~i~~l--~fsp~~-~~ll 696 (835)
+...+.+|...|.+++|++++ .|++|+.||+|++||++++.. ...+. ..|.++ +|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 124678899999999999863 688999999999999987643 33343 458888 567777 7899
Q ss_pred EEEcCCcEEEEECCCCeEEEEEcCCCC--CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 697 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 697 ~~s~dg~I~IwDl~t~~~i~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
+++.|+.|+|||+++++++..+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+.+|...|++|+
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998877666666653 588999999999999888 889999999987 66777888999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCCcEEEec-----cCCCCeeEEEEeCCCCEE
Q 003271 774 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 822 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-----~h~~~V~~la~spdg~~L 822 (835)
|+|++++|++|+.|++|+|||+......... .+...|.+++|+|++..+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999998764221111 112257899999999855
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.7e-27 Score=264.58 Aligned_cols=273 Identities=14% Similarity=0.157 Sum_probs=223.0
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEcC
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~ 585 (835)
.++++++.|+.|++|..... ..+..+.+|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 47788999999999943222 2344555665 48999999999977 667789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~ 664 (835)
+++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.+++. +..+. +...+.+++|+|+++.++++++.++.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCE
Confidence 999998887665 899999999999886555 679999999998764 44554 34578999999999888789999999
Q ss_pred EEEEECCCCeeeeEee--cCceEEEEecCCCEEE-EEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271 665 IRYWSINNGSCAGVFK--SGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs 741 (835)
|++||+.+++.+..+. ..+..++|+|+++.++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEe
Confidence 9999999999887776 3478899999999885 45567999999999998887776 566899999999999888775
Q ss_pred ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEEcCCCcEE-EeccCC
Q 003271 742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD 807 (835)
Q Consensus 742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~-sgs~dg~I~IwDl~~~~~~-~l~~h~ 807 (835)
++.|++||+.++ ..+..+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++++ .+..|.
T Consensus 219 ~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp ECSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred cCcCCCcEEEEECCCC---eEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 689999999887 666666654 4578999999999885 5567899999999999877 444443
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=307.34 Aligned_cols=250 Identities=20% Similarity=0.305 Sum_probs=211.4
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEE
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~I 623 (835)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998 56778889999999999999988 999999999999999
Q ss_pred EecCCCCc-eeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc
Q 003271 624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 624 WDl~t~~~-~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~ 700 (835)
||+.++.. ....+.+|...|.+++|+|+ +. ++++|+.||.|++||++++....
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~----------------------- 137 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS----------------------- 137 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC-----------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc-----------------------
Confidence 99998652 46777889999999999998 54 77788999999999998653211
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-------------CCCEEEEEe-CCeEEEEEcCCCCCc-ceEEEeecC
Q 003271 701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNT-------------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCT 765 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-------------dg~~Lasgs-Dg~I~IwDl~t~~~~-~~i~~l~~~ 765 (835)
...+.+|...|.+++|+| ++.+|++++ ||.|++||++++... .++..+..|
T Consensus 138 --------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 138 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp --------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred --------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 112345778888888888 588899988 999999999886432 456678889
Q ss_pred CCceEEEEEeCC---CCEEEEEEcCCeEEEEEcCCCc------EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 766 GNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK------TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 766 ~~~V~sv~fspd---g~~L~sgs~dg~I~IwDl~~~~------~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
...|.+++|+|+ +.+|++++.|+.|++||+.++. ......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 999999999999 8999999999999999998873 224456889999999999999999999999999996
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=8.2e-29 Score=281.14 Aligned_cols=251 Identities=19% Similarity=0.371 Sum_probs=217.3
Q ss_pred EEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCC----------CeEEEEeccCCCCeEEEEECCCCC-EEEEE
Q 003271 548 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATS 615 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t----------~~~i~~l~~h~~~V~sv~fspdg~-~Latg 615 (835)
.....+|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3455689999999999997 67999999999999999986 677788899999999999999988 99999
Q ss_pred ECCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEee---cCc
Q 003271 616 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK---SGA 683 (835)
Q Consensus 616 s~Dg~I~IWDl~t~~~------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~~~~~---~~i 683 (835)
+.||.|+|||+.+... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++ +.+..+. ..+
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 9999999999987432 135677899999999999977789999999999999999976 3444443 558
Q ss_pred eEEEEecCCC-EEEEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC----
Q 003271 684 TQMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK---- 755 (835)
Q Consensus 684 ~~l~fsp~~~-~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~---- 755 (835)
.+++|+|++. .+++++.|+.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 9999999987 688899999999999998 567888888999999999999985 677777 99999999987321
Q ss_pred -------cceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCC
Q 003271 756 -------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 756 -------~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~ 798 (835)
...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus 361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256778888999999999999999 8999999999999998754
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.3e-27 Score=265.43 Aligned_cols=260 Identities=12% Similarity=0.124 Sum_probs=219.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl 646 (835)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 467888999999999999999999988775 48999999999977 5666899999999988764 55555444 89999
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEE-EEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~ 723 (835)
+|+|+++.++++++.++.|++||+.+++.+..+.. .+..++|+|+++.++ +++.++.|++||+.+++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 99999998888888889999999999998877663 478899999999884 5566899999999999998888754 5
Q ss_pred CeEEEEEcCCCCEEE-EEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEEcCCC
Q 003271 724 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 798 (835)
Q Consensus 724 ~I~sl~fspdg~~La-sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs---~dg~I~IwDl~~~ 798 (835)
.+.+++|+|++++|+ +++ ++.|++||++++ .++..+. +...+.+++|+|++++|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 455 889999999887 5555554 456789999999999999998 6889999999999
Q ss_pred cEEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003271 799 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 835 (835)
Q Consensus 799 ~~~~l~~h~~~V~~la~spdg~~L-aSgs~DG~V~IWd 835 (835)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887444444568999999999877 6778899999996
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=289.60 Aligned_cols=260 Identities=9% Similarity=0.077 Sum_probs=210.7
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~ 632 (835)
.-...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+|+|+|+| .++.+.+|+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 3456799999999999999999999999 766554 447999999999999998 45555555543221
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-c------CceEEEEecCCCEEEEEEcCCcEE
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-S------GATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~------~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
... ..|...|.+++|+|+|. .+++++.||.|++||... ++..+. . .+.+++|+|+|.+|++++.||.|+
T Consensus 79 ~~~-~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LLN-SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SST-TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Eee-cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 112 24578999999999987 666899999999999654 444333 2 388999999999999999999999
Q ss_pred EEECCCCe-------EEEEE----cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEe-ecCCCceEEEE
Q 003271 706 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 773 (835)
Q Consensus 706 IwDl~t~~-------~i~~l----~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~ 773 (835)
|||+.++. .+..+ .+|...|.+++|+|+| +++++.|+.|++||+..+.......++ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999875 35665 6688899999999999 444444999999999887432234566 47788999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 003271 774 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~--spdg~~LaSgs~DG~V~IWd 835 (835)
|+ +..|++++ ++.|++||+.+++.. ...+|...|.+++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 699999999999985 44489999999999 999999999999999 9984
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.1e-27 Score=261.37 Aligned_cols=284 Identities=17% Similarity=0.244 Sum_probs=227.9
Q ss_pred CCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEE
Q 003271 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (835)
Q Consensus 480 ~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~ 559 (835)
.....+.|+++.. ...++++|+.|+.|++|..... + ......+.+|.+.|+
T Consensus 40 ~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~---------------~--~~~~~~~~~h~~~v~ 90 (368)
T 3mmy_A 40 DSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDS---------------G--QTIPKAQQMHTGPVL 90 (368)
T ss_dssp SCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTT---------------S--CEEEEEEEECSSCEE
T ss_pred CceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCC---------------C--ceeEEEeccccCCEE
Confidence 3566667766521 1268999999999999954331 1 122356778999999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEE--CCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~f--spdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~ 637 (835)
+++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++.+|++++.||.|++||+.+++. +..+.
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~ 168 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQ 168 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEE
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEe
Confidence 99999999999999999999999999998776 4579999999999 89999999999999999999998764 56666
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----ecCceEEEEecCCCE----EEEEEcCCcEEEEE
Q 003271 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KSGATQMRFQPRLGR----ILAAAIENYISILD 708 (835)
Q Consensus 638 ~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----~~~i~~l~fsp~~~~----ll~~s~dg~I~IwD 708 (835)
.+ ..+.++.+.+. .+++++.++.+++|+++........ .....++.+.++... +++++.|+.|++||
T Consensus 169 ~~-~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 169 LP-ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp CS-SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred cC-CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 55 46777777754 5667888999999999876543322 133566666665544 99999999999999
Q ss_pred CCCC---eEEEEEcCCCC------------CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 709 VETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 709 l~t~---~~i~~l~~h~~------------~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
++.. ..+..+..|.. .|.+++|+|++.+|++++ ||.|++||+.++ .++..+..|...|.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISAC 321 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEEEE
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCceEE
Confidence 9987 55667777765 799999999999999999 999999999987 7888999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEE---EEEcCCCcEE
Q 003271 773 VFHPTFPSLLVIGCYETLE---LWNMTENKTL 801 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~---IwDl~~~~~~ 801 (835)
+|+|++.+|++++.|+..+ +|+.+....+
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EECCCCCeEEEEecccccccccccCCCcccee
Confidence 9999999999999988444 4444444444
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=4.5e-28 Score=261.16 Aligned_cols=278 Identities=19% Similarity=0.215 Sum_probs=204.4
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd 583 (835)
..++++|+.|+.|++|..... ...+.....+.+|...|++++|+| |+.+|++|+.||.|+|||
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKD---------------TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSS---------------SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred CCEEEEeeCCCeEEEEECCCC---------------CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 368999999999999954332 122345677889999999999999 699999999999999999
Q ss_pred cCCC---------eEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCceeEE------------eecCC
Q 003271 584 TESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRT------------FTGHS 640 (835)
Q Consensus 584 ~~t~---------~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~~~~~------------~~~h~ 640 (835)
+.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.++...... ...|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 9887 678888999999999999999 999999999999999999876532110 12678
Q ss_pred CCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCee--eeEee---cCceEEEEecCC----CEEEEEEcCCcEEEEEC
Q 003271 641 TTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK---SGATQMRFQPRL----GRILAAAIENYISILDV 709 (835)
Q Consensus 641 ~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~--~~~~~---~~i~~l~fsp~~----~~ll~~s~dg~I~IwDl 709 (835)
..|.+++|+|+ ...++++++.++.+.+|+...++. +..+. ..+.+++|+|++ ..|++++.|+.|++||+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 89999999997 345788899999998888887765 33333 458999999998 78999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271 710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 710 ~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg 784 (835)
+.+........+...+....+.+...++..+. ...+.+|+... ...+..+.+|...|++++|+|++++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EECC---------------------------------------CCSEE---EEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc---ccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 98766555544444455555555555555544 22444444333 37788889999999999999999999999
Q ss_pred EcCCeEEEEEcCCCcEE
Q 003271 785 GCYETLELWNMTENKTL 801 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~~ 801 (835)
+.|+.|+|||+.+++.+
T Consensus 325 ~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ETTSCEEEEEECTTSCE
T ss_pred cCCCcEEEEecCcCcch
Confidence 99999999999887543
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-29 Score=287.77 Aligned_cols=243 Identities=10% Similarity=0.108 Sum_probs=203.4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC-----CeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~-----~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
.|...|++|+|||||.+||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++|++|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688999999999999999999999999999655 667777 665 49999999999999999999999999999
Q ss_pred CCCc------eeEEe----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEee----cCceEEEEec
Q 003271 628 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK----SGATQMRFQP 690 (835)
Q Consensus 628 t~~~------~~~~~----~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~----~~i~~l~fsp 690 (835)
++.. .+..+ .+|...|.+++|+|++ +++++.|+.|++||+..++.. ..+. ..+.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8753 34565 6678899999999997 567788999999999887742 3332 348999999
Q ss_pred CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE--cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 691 ~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f--spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
+..+++++ ++.|++||+.++.......+|...|..+.| +|++..|+++. ||+ ++|.+.
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57777776 799999999998885544479999999999 99999999999 899 999975
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
.+.++|++..+++. |++|++|+...+... ...+...|.+++|+|||.++|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~-~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFN-NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCcee-eeccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866664 899999998766533 3344677999999999999999874
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.2e-28 Score=276.66 Aligned_cols=262 Identities=15% Similarity=0.134 Sum_probs=177.3
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-----EeccCCCCeEEEEECC--------CCCEEEEEECC
Q 003271 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSAD 618 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-----~l~~h~~~V~sv~fsp--------dg~~Latgs~D 618 (835)
..|...+....+++++.+|++|+.|++|+|||+.++.... .+.+|.+.|.+|+|+| |+++|++|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455556666667778899999999999999999886543 3578999999999997 78999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAA 698 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~ 698 (835)
++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|+.|++||+++++.......... ......+.
T Consensus 166 ~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~-----~~~~~~~s- 238 (393)
T 4gq1_A 166 CTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL-----VKNPWLLT- 238 (393)
T ss_dssp SEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------------CSCCCSEE-
T ss_pred CeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC-----cccceEEe-
Confidence 9999999987654 5666778899999999999888899999999999999998876544321100 00000111
Q ss_pred EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE------
Q 003271 699 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH------ 770 (835)
Q Consensus 699 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs-pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~------ 770 (835)
++...........+|...+.++.|+ +++..|++++ |+.+++||+..+. ....+..+...+.
T Consensus 239 --------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~---~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 239 --------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN---DYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp --------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSC
T ss_pred --------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC---CCceEeeecCccccEEEcc
Confidence 1111111222345688899999986 7999999999 9999999998763 2222222222222
Q ss_pred ------------EEEEeC--CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 771 ------------SCVFHP--TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 771 ------------sv~fsp--dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
.+.|+| ++.++++++.|+.|+|||+.++... ....|...|.+++|+|||++||++++||.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 223333 2335566777999999999988766 667899999999999999999999988753
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.6e-26 Score=260.59 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=201.8
Q ss_pred EecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEcC--CCeEEEEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271 550 LIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~--t~~~i~~l~--~h~~~V~sv~fspdg~~Latgs~Dg~I~IW 624 (835)
...+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++++|+|++.+|++++.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 345788899999999999996 889999999999999 888887776 577899999999999999999999999999
Q ss_pred ecCCCCc---eeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEecCCCEE
Q 003271 625 DTENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQPRLGRI 695 (835)
Q Consensus 625 Dl~t~~~---~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fsp~~~~l 695 (835)
++.+... ....+.+|...|.+++|+|+ +..+|++|+.|+.|++||+.+++++..+ ...+.+++|+ ++.+|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 9987653 22367789999999999998 2347789999999999999998877663 2458999999 99999
Q ss_pred EEEEcCCcEEEEECCCCeEEEEEcC-------------------------CCCCeEEEEEcCCCCEEEEEe--CCeEEEE
Q 003271 696 LAAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVW 748 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~~~i~~l~~-------------------------h~~~I~sl~fspdg~~Lasgs--Dg~I~Iw 748 (835)
++++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ |+.|+||
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999998887752 345799999999999999887 8899999
Q ss_pred Ec--CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEEcC
Q 003271 749 SI--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 796 (835)
Q Consensus 749 Dl--~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-------dg~I~IwDl~ 796 (835)
++ ..+.....+..+..+ ..|.+++|+|++ .+++++. +..|.+|.+.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 99 444444566777777 889999999954 4444433 3457777654
No 120
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.5e-25 Score=262.61 Aligned_cols=307 Identities=10% Similarity=0.064 Sum_probs=246.3
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc-
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT- 584 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~- 584 (835)
..++++++.|+.|.+|..... ..+..+..+.. +.+++|+|||++|++++.|+.|++||+
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECc
Confidence 367888899999999933221 23445553323 899999999999999999999999999
Q ss_pred -CCCeEEEEeccCCCCeEEEEECC----CCCEEEEEEC-CCeEEEEecCCCCceeEEeec----------CC-CCeEEEE
Q 003271 585 -ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLD 647 (835)
Q Consensus 585 -~t~~~i~~l~~h~~~V~sv~fsp----dg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~----------h~-~~V~sl~ 647 (835)
.+++++.++. +...+..++|+| |+++|++++. +++|.|||..+.+. +..+.. |. ..+.++.
T Consensus 209 ~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 209 AKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp SSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred CCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEE
Confidence 8999998887 455689999999 9999999885 89999999988764 454443 22 3789999
Q ss_pred EcCCCCcEEEEEeCCCcEEEEECCCCeeee--Eee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcC--
Q 003271 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-- 720 (835)
Q Consensus 648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~-- 720 (835)
++|++..++++...++.|.+||+.+.+.+. .+. .....+.|+|+++++++++. ++.|.+||+.+++++..+..
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 999999899999999999999998866543 333 33778999999999887775 78999999999999888764
Q ss_pred --CCCCeEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEEEE------
Q 003271 721 --HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG------ 785 (835)
Q Consensus 721 --h~~~I~sl~fspd-g~~Lasgs--Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg~~L~sgs------ 785 (835)
|......+ ++|+ +.+++++. |++|.|||+.+... .+++.++..+...+..++++|++++|++++
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 55444444 4676 66677764 78999999988321 478999999998899999999999999987
Q ss_pred -cCCeEEEEEcCCCcEE-Ee---------ccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 003271 786 -CYETLELWNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 835 (835)
Q Consensus 786 -~dg~I~IwDl~~~~~~-~l---------~~h~~~V~~la~spdg~~LaSgs-----~DG~V~IWd 835 (835)
.+++|.|||+.+++.. .. ..+...+..++|+++|+.|+++. .|+.|.|||
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 2679999999988765 32 35678899999999999888663 379999997
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.4e-25 Score=247.87 Aligned_cols=277 Identities=10% Similarity=0.115 Sum_probs=224.2
Q ss_pred ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (835)
Q Consensus 500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (835)
..+.....++++++.|+.|++|........ .......+.+|.+.|.+++|+++++++++++.|+.|
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v 193 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV 193 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence 334445578888888999999954332100 000111346899999999999999999999999999
Q ss_pred EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s 658 (835)
++||+++++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++. +..+.. ...+.+++|+|+++.++++
T Consensus 194 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 194 HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEE
Confidence 9999999999999999999999999999999886555 799999999987653 455544 4569999999998866655
Q ss_pred Ee-------CCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEE-EcCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 003271 659 CD-------NNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSV 728 (835)
Q Consensus 659 gs-------~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~-s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl 728 (835)
+. .|+.|++||+.+++.+..+ ...+..++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.++
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~ 350 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTI 350 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeE
Confidence 43 5889999999999887666 4568889999999876555 678999999999998888776 77889999
Q ss_pred EEcCCCCEEEEEe-C---------------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEE
Q 003271 729 CWNTSGEYLASVS-D---------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLE 791 (835)
Q Consensus 729 ~fspdg~~Lasgs-D---------------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~ 791 (835)
+|+|++++|++++ + |.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. ++.|+
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 9999999888877 2 49999999887 66666665 567899999999999998886 99999
Q ss_pred EEEcCC
Q 003271 792 LWNMTE 797 (835)
Q Consensus 792 IwDl~~ 797 (835)
+|+++.
T Consensus 427 v~~~~~ 432 (433)
T 3bws_A 427 VYRRDG 432 (433)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 999864
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=3.9e-26 Score=252.58 Aligned_cols=243 Identities=9% Similarity=0.026 Sum_probs=183.2
Q ss_pred EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
||++.+...+..+..|...|++++|+||+++|++|+.|+ ++|||+.+... .... +...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMSQ--EMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence 567777777777889999999999999999999998775 78999987543 2222 2235888889988887778888
Q ss_pred CCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEE
Q 003271 661 NNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 737 (835)
Q Consensus 661 ~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~L 737 (835)
.|+.|++||+.+++++..+. ..+.+++++++ .++ .+.++.|++||+.+. +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~-~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIV-VSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEE-EEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEE-EEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 89999999999999887765 44778888765 333 345899999999987 55554443 444566666 666
Q ss_pred EEE--e-CCeEEEEEcCCCCCc------------c-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEEcCCCcE
Q 003271 738 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 800 (835)
Q Consensus 738 asg--s-Dg~I~IwDl~t~~~~------------~-~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~-I~IwDl~~~~~ 800 (835)
+++ + ||.|++||+.++... . ++..+.+|...|.+++|+|++.+|++++.|++ |+|||+.++++
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 999999999875310 1 26788899999999999999999999999998 99999999988
Q ss_pred E-Eec-c-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 801 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 801 ~-~l~-~-h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+ .+. + |...|.+++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 454 4 999999999999999999999999999996
No 123
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-26 Score=281.60 Aligned_cols=233 Identities=17% Similarity=0.263 Sum_probs=198.1
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEE
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLW 582 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd--g~~Lasgs~Dg~I~VW 582 (835)
...++++|+.|+.|++|... ......+..+.+|.+.|++++|+++ +.+|++|+.||.|++|
T Consensus 20 dg~~latg~~dg~I~vwd~~-----------------~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVE-----------------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEE-----------------TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCcEEEEecC-----------------CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 34689999999999999432 1234567788999999999999988 9999999999999999
Q ss_pred EcCCCe--EEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCc-eeEEeecCCCCeEEEEEcCC------
Q 003271 583 CTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS------ 651 (835)
Q Consensus 583 d~~t~~--~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl~fsp~------ 651 (835)
|+.+++ .+..+.+|...|++++|+|+ +.+|++|+.||.|++||+.+... ....+.+|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999987 77888899999999999999 99999999999999999987632 34567789999999999994
Q ss_pred ------CCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCceEEEEecC---CCEEEEEEcCCcEEEEECCCCe--
Q 003271 652 ------KEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGATQMRFQPR---LGRILAAAIENYISILDVETQV-- 713 (835)
Q Consensus 652 ------g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~-- 713 (835)
+..++++|+.||.|++||++++ .+...+. ..+.+++|+|+ +..+++++.||.|++||++++.
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 2347779999999999999877 3334433 45899999999 8999999999999999999863
Q ss_pred ---EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271 714 ---CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 714 ---~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~ 754 (835)
.......|...|++++|+|+|.+|++++ ||.|++||+....
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 3333445888999999999999999998 9999999998654
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.9e-26 Score=248.10 Aligned_cols=261 Identities=11% Similarity=0.081 Sum_probs=198.8
Q ss_pred cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (835)
Q Consensus 503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (835)
...+.++++|+.|+.|++|....+. ....+. ...|.++.|+|+ +++++.|++|++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~----------------~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSK----------------TITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSS----------------CEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCc----------------EEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 3445789999999999999553331 111111 345778888888 9999999999999
Q ss_pred EcC---------CCeEEEEec-cCCCCeEEEEECC--CCCEEEEEECCCeEEEEecCCCCceeEEe-ecCCCCeEEEEEc
Q 003271 583 CTE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFH 649 (835)
Q Consensus 583 d~~---------t~~~i~~l~-~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~~~~~~~~-~~h~~~V~sl~fs 649 (835)
+.. +++.+..+. .|.+.|.+++|+| ++.+|++++.||+|++||+.++.. +... ..|...|.+++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEEC
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEEC
Confidence 665 555444443 6778999999999 999999999999999999998775 4444 4566689999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeee-eEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC---C
Q 003271 650 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H 721 (835)
Q Consensus 650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h 721 (835)
|++. +|++|+.||.|++||+++++.+ ..+. ..+.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |
T Consensus 180 pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 180 KDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp TTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence 9976 7889999999999999998876 5554 4599999999999999999 55999999998866544432 3
Q ss_pred CCCe--EEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEE
Q 003271 722 KNQV--HSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWN 794 (835)
Q Consensus 722 ~~~I--~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp---dg~~L~sgs~dg~I~IwD 794 (835)
...+ .+++|+|+|++|++++ |+.|+||++..... .. .. ..+..+.|.+ +...+++++.|+.+.++-
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~--~~-~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK--NW-TK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC--SE-EE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc--ce-Ee----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 3334 3699999999999976 88999999976532 11 11 4567788888 888999999999888875
Q ss_pred cCC
Q 003271 795 MTE 797 (835)
Q Consensus 795 l~~ 797 (835)
...
T Consensus 331 ~~~ 333 (343)
T 3lrv_A 331 KTN 333 (343)
T ss_dssp ECS
T ss_pred ecC
Confidence 443
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=1.3e-24 Score=236.14 Aligned_cols=282 Identities=12% Similarity=0.113 Sum_probs=196.1
Q ss_pred eeEEEEEecCCCCC----EEEEEEeCCCC---EEEEEeCCCeEEEEEcCCC---eEEEEeccCCCCeEEEEECCCCC-EE
Q 003271 544 TFTEFQLIPASTSK----VESCHFSPDGK---LLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLS-RL 612 (835)
Q Consensus 544 ~~~~i~~l~gH~~~----V~sl~fSpdg~---~Lasgs~Dg~I~VWd~~t~---~~i~~l~~h~~~V~sv~fspdg~-~L 612 (835)
.+..+..++...+. |.++-|-.-|- .+++++ ...|++|+..++ +.++++..|+.+|..|.|.||.. ++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 34455555554443 45555544332 466676 479999999988 89999999999999999999643 33
Q ss_pred EEEECCC---eEEEEecCCC--C-ceeEEeecCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEEC-CCCeeeeEee---
Q 003271 613 ATSSADR---TVRVWDTENP--D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSI-NNGSCAGVFK--- 680 (835)
Q Consensus 613 atgs~Dg---~I~IWDl~t~--~-~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs--~Dg~I~iwDl-~s~~~~~~~~--- 680 (835)
.++-..- .|+..-+... . .......+|...|..+ ++ ..++.+++ .|+.|++|++ .+++.+..+.
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 3332211 1211111111 0 1122223444445444 44 44665643 6999999999 4476655443
Q ss_pred cCceEEEEec---CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC---CCeEEEEEcCCCCEE------------EEEe-
Q 003271 681 SGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS- 741 (835)
Q Consensus 681 ~~i~~l~fsp---~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~I~sl~fspdg~~L------------asgs- 741 (835)
..+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 4588889999 77999999999999999999999999998654 367788999999887 4456
Q ss_pred CCeEEEEEcCCCCCcceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCee-EEE
Q 003271 742 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SLA 814 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l-----~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~-~la 814 (835)
|++|++||..++ +++..+ .+|...+.+..++ +..+++++.|++|+|||+.+++++ ++.+|...+. .++
T Consensus 259 D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 259 VFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp CEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 889999999887 555443 2455555544444 778999999999999999999988 6677877655 689
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 003271 815 ASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 815 ~spdg~~LaSgs~DG~V~IWd 835 (835)
|+|||++|++|+.|++|+|||
T Consensus 334 fSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEec
Confidence 999999999999999999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.3e-24 Score=246.10 Aligned_cols=263 Identities=13% Similarity=0.082 Sum_probs=213.3
Q ss_pred EEecCCCCCEEEEEEeC--------------CCCEEEEEeCC------CeEEEEEcCCCeEEEEeccCCCCeEEEEECCC
Q 003271 549 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSp--------------dg~~Lasgs~D------g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd 608 (835)
..+.+|...|.++++++ .+..|++++.+ +.|++||++. .....+..|...|.+++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 45677888888777764 25566666554 7999999975 445677789999999999999
Q ss_pred CCEEEEEECCC---eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEee--c
Q 003271 609 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFK--S 681 (835)
Q Consensus 609 g~~Latgs~Dg---~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~--I~iwDl~s~~~~~~~~--~ 681 (835)
+++|++++.|+ .|++||+.+++. ..+..|...+.+++|+|+++.++++++.++. |++||+.+++...... .
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 99999999885 999999998763 4567788899999999999988878876665 9999999887643332 3
Q ss_pred CceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCC
Q 003271 682 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGS 754 (835)
Q Consensus 682 ~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---g~I~IwDl~t~~ 754 (835)
.+..++|+|++..|++++.+ + .|++||+.+++.. .+..+...+.+++|+|+|++|++++ + ..|++||+.++
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~- 345 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG- 345 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC-
Confidence 47889999999999988864 4 6888899887643 4555777899999999999999887 4 48999999886
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC
Q 003271 755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNG 820 (835)
Q Consensus 755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~ 820 (835)
.. ..+..+. .+.+++|+|++++|++++.++ .|++||+..+....+..|.+.|.+++|+|...
T Consensus 346 --~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 346 --GV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp --CE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred --CE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 33 3444444 899999999999999998877 89999999888889999999999999999654
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.7e-25 Score=251.09 Aligned_cols=233 Identities=12% Similarity=0.118 Sum_probs=176.8
Q ss_pred CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--------CCCEEEEEeC
Q 003271 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGGH 575 (835)
Q Consensus 504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--------dg~~Lasgs~ 575 (835)
....++++|+.|++|++|..... .......+..+.+|.+.|++++|+| |+++||+|+.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~--------------~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNE--------------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETT--------------EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred CCCCEEEEEeCCCcEEEEECCCC--------------ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34468999999999999944322 1112234556789999999999998 8899999999
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCcee---------------------
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL--------------------- 633 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~--------------------- 633 (835)
|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999988888888899999999999986 489999999999999998765311
Q ss_pred ---EEeecCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---------------------ceEEEE
Q 003271 634 ---RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---------------------ATQMRF 688 (835)
Q Consensus 634 ---~~~~~h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---------------------i~~l~f 688 (835)
....+|...|.++.|+ +++. .+++++.|+.|++||+..+.....+... .....+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp C------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 1224678889999997 5655 6779999999999999876654333211 112233
Q ss_pred ec-CCCEE-EEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271 689 QP-RLGRI-LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 751 (835)
Q Consensus 689 sp-~~~~l-l~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~ 751 (835)
++ .++.+ ++++.|+.|++||+.++..+..+..|...|.+++|+|||++|++++++.+.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 33 34444 45567899999999999888888889999999999999999999998878888764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3e-24 Score=242.98 Aligned_cols=271 Identities=15% Similarity=0.169 Sum_probs=216.1
Q ss_pred CCEEEEEEeCCCC-EEEEEe----CCC----eEEEEEc--CCCeEE--EEeccCCCCeEEEEECC--------------C
Q 003271 556 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S 608 (835)
Q Consensus 556 ~~V~sl~fSpdg~-~Lasgs----~Dg----~I~VWd~--~t~~~i--~~l~~h~~~V~sv~fsp--------------d 608 (835)
..|...+|++.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888888775 566776 467 8999999 888877 55888988888877764 2
Q ss_pred CCEEEEEECC------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEe
Q 003271 609 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF 679 (835)
Q Consensus 609 g~~Latgs~D------g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~~~~~~~ 679 (835)
+..++.++.+ +.|++||++... .+.+..|...|.+++|+|+++.++ +++.+ ..|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5566666554 799999998533 577788999999999999988555 55555 49999999998876443
Q ss_pred --ecCceEEEEecCCCEEEE-EEcCC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEc
Q 003271 680 --KSGATQMRFQPRLGRILA-AAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI 750 (835)
Q Consensus 680 --~~~i~~l~fsp~~~~ll~-~s~dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl 750 (835)
...+.+++|+|++..|++ ++.++ .|++||+.+++. ..+..|...+.+++|+|||++|++++ ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 245789999999998884 44454 499999998876 56677888999999999999998887 34 7888898
Q ss_pred CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 751 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.++++..+..|. .+.+++|+|+|++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 8762 23455567788999999999999988875 48999999999988777765 8999999999999998887
Q ss_pred CC---cEEEeC
Q 003271 828 DK---CVKIWK 835 (835)
Q Consensus 828 DG---~V~IWd 835 (835)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 77 688885
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.7e-23 Score=227.21 Aligned_cols=250 Identities=10% Similarity=0.053 Sum_probs=178.1
Q ss_pred ccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe-CC---CeEEEEEcCCC----eEEEEeccCCCCeEEEEECCCC
Q 003271 538 EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HD---KKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSL 609 (835)
Q Consensus 538 ~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs-~D---g~I~VWd~~t~----~~i~~l~~h~~~V~sv~fspdg 609 (835)
...++..++.++++..|..+|..+.+.||..-|++.. .. +.|+..-+... .......+|...|.++ +++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g 145 (356)
T 2w18_A 69 KALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKR 145 (356)
T ss_dssp EESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTT
T ss_pred ccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCC
Confidence 4445566778888888888888888888654332221 11 11111111111 1111113344445444 455
Q ss_pred CEEEEEE--CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEeec----
Q 003271 610 SRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---- 681 (835)
Q Consensus 610 ~~Latgs--~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---- 681 (835)
+++.+++ .|+.|++|++......+..+..|...+..++|++ ....+|++++.|++|+|||++++++++++.+
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~ 225 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY 225 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc
Confidence 5555543 5899999999654445677788999999999988 2245888999999999999999999998864
Q ss_pred --CceEEEEecCCCEE------------EEEEcCCcEEEEECCCCeEEEEE-----cCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 682 --GATQMRFQPRLGRI------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 682 --~i~~l~fsp~~~~l------------l~~s~dg~I~IwDl~t~~~i~~l-----~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
.+.+++|+|++..+ ++++.|++|++||..+++.+..+ .+|...+.+.+++ +.++++++
T Consensus 226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~ 303 (356)
T 2w18_A 226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT 303 (356)
T ss_dssp -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET
T ss_pred eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC
Confidence 25577899998876 44677899999999999887765 3676666555554 88899998
Q ss_pred CCeEEEEEcCCCCCcceEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 742 DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~-sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
|++|+|||+.++ +++.++.+|...+. +++|+|++++|++|+.|++|+|||+
T Consensus 304 DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999998 88999988877655 5899999999999999999999996
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.2e-22 Score=219.29 Aligned_cols=266 Identities=10% Similarity=0.032 Sum_probs=215.2
Q ss_pred CCEEEEEEeCCCCEEEEEeC-------CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecC
Q 003271 556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 627 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~-------Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~ 627 (835)
..+..++|+|++++|++++. ++.|.+||..+++.+..+... ..+.+++|+|++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888774 568999999999988888643 457889999999966555 457999999999
Q ss_pred CCCceeEEeecCCC---------CeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCE
Q 003271 628 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGR 694 (835)
Q Consensus 628 t~~~~~~~~~~h~~---------~V~sl~fsp~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ 694 (835)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ..+..++|+|+++.
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8774 444444332 278899999998777666 458899999999999888776 23788999999999
Q ss_pred EEEEEcCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271 695 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 768 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~ 768 (835)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++++|++++ ++.|.+||+.++ +.+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877664 556788999999999887776 589999999887 5555555433
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271 769 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 769 V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D 828 (835)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+.+..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999887777 5789999999999988555556688999999999977666654
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=3.2e-23 Score=242.84 Aligned_cols=266 Identities=9% Similarity=0.063 Sum_probs=214.0
Q ss_pred EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec--CCCCceeEEeecC
Q 003271 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 639 (835)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl--~t~~~~~~~~~~h 639 (835)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.+ ++..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence 3788999999999999999999999999999974433 899999999999999999999999999 6654 355555 4
Q ss_pred CCCeEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------------CceEEEEecCCCEEEEEE-c
Q 003271 640 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------------GATQMRFQPRLGRILAAA-I 700 (835)
Q Consensus 640 ~~~V~sl~fsp----~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------------~i~~l~fsp~~~~ll~~s-~ 700 (835)
...+..++|+| +++.+++++..++.|.+||..+++++..+.. .+..+.+++++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 56689999999 9987776666799999999999998877653 356789999887766655 5
Q ss_pred CCcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec----CCCceEEE
Q 003271 701 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 772 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~----~~~~V~sv 772 (835)
++.|.+||+.+.+.+. .+. +...+.++.|+|+|++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 6999999998764332 343 667788999999999877665 889999999988 66666654 44333333
Q ss_pred EEeCCCCEEEEEE--cCCeEEEEEcCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEE-------CCCcEEEeC
Q 003271 773 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 835 (835)
Q Consensus 773 ~fspdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~l~~h~~~V~~la~spdg~~LaSgs-------~DG~V~IWd 835 (835)
++|++..+++++ .+++|.|||+.+ .+++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578744444444 478999999988 7777 7778888899999999999999987 377999997
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.5e-22 Score=219.34 Aligned_cols=271 Identities=7% Similarity=0.134 Sum_probs=203.1
Q ss_pred EEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecC
Q 003271 562 HFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH 639 (835)
Q Consensus 562 ~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h 639 (835)
.|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.+++.....+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45565555 6777889999999999999988887777777 9999999997777666 8899999999877535566666
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEc-CCc-EEEEECCCC
Q 003271 640 STTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAI-ENY-ISILDVETQ 712 (835)
Q Consensus 640 ~~~V~sl~fsp~g~~ll~sgs~D-g--~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~-dg~-I~IwDl~t~ 712 (835)
..++.+++|+|+++.++ ++..+ + .|++||+.+++.+..+.. ....++|+|+++++++++. ++. |.+|++...
T Consensus 83 ~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~ 161 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD 161 (331)
T ss_dssp SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence 66666699999988666 44444 3 899999999998877764 3688999999987776655 478 999998753
Q ss_pred eEE----EEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271 713 VCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786 (835)
Q Consensus 713 ~~i----~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~ 786 (835)
..+ .........+.+++|+|+|++|+++. ++.|++||+.++.....+..+.. ...+..++|+|++++|++++.
T Consensus 162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECS
T ss_pred CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEc
Confidence 222 12223456689999999999776655 78999999988743222555554 466788999999998877765
Q ss_pred -CCeEEEEEcCCCcEE---EeccC----CCC---eeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271 787 -YETLELWNMTENKTL---TLSAH----DKL---VSSLAASTVNGMVASAS-HDKCVKIWK 835 (835)
Q Consensus 787 -dg~I~IwDl~~~~~~---~l~~h----~~~---V~~la~spdg~~LaSgs-~DG~V~IWd 835 (835)
++.|.+||+.+++.. .+..+ ... +..++|+||+++|++++ .++.|.|||
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 668999999998873 11111 222 35589999999886655 466999996
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.4e-22 Score=217.53 Aligned_cols=264 Identities=9% Similarity=0.140 Sum_probs=194.1
Q ss_pred EEEEEeCCCeEEEEEcC-CC--eEEEEeccCCCCeEEEEECCCCCEEEEEECC-CeEEEEecC--CCCce-eEEeecCCC
Q 003271 569 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST 641 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~-t~--~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-g~I~IWDl~--t~~~~-~~~~~~h~~ 641 (835)
++++++.|+.|++|+++ ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++... +..+..+ .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence 34455789999999995 33 334443 477789999999999999998887 999999998 44432 2334433 3
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCC-CeE
Q 003271 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK--SGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 714 (835)
Q Consensus 642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t-~~~ 714 (835)
.+.+++|+|+++.+++++..++.|++||+. ..+.+..+. ..+..++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 789999999998777777778999999994 333444443 3478899999999999888 789999999987 644
Q ss_pred EE----EEcC-CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CcceEEEee---cC---CCceEEEEEeCCCCE
Q 003271 715 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS 780 (835)
Q Consensus 715 i~----~l~~-h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~-~~~~i~~l~---~~---~~~V~sv~fspdg~~ 780 (835)
.. .+.. ....+.+++|+|++++|++++ ++.|.+||+.... ....+..+. .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2222 345788999999999776655 8899999996421 112222222 11 235678999999998
Q ss_pred EEEEE-cCCeEEEEEcC--CCc--EE-EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271 781 LLVIG-CYETLELWNMT--ENK--TL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 835 (835)
Q Consensus 781 L~sgs-~dg~I~IwDl~--~~~--~~-~l~~h~~~V~~la~spdg~~LaSgs-~DG~V~IWd 835 (835)
|+++. .++.|.+||+. ++. .+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 333 33 333343 489999999999888887 689999993
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=6e-23 Score=248.30 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=213.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CC-----eEEEEEcCCCeEEEEeccCCC------------------------CeEEEE
Q 003271 555 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 604 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~-Dg-----~I~VWd~~t~~~i~~l~~h~~------------------------~V~sv~ 604 (835)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777765433 388999
Q ss_pred ECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC
Q 003271 605 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682 (835)
Q Consensus 605 fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~ 682 (835)
|+|||++|++++. +.|++||+.++. . ...+..|...+.+++|+|+|+.+++ ++ ++.|++||+.+++.......+
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCC
Confidence 9999999999986 899999999862 2 4556778888999999999986554 44 569999999988776544322
Q ss_pred -------------------ceEEEEecCCCEEEEEEcCC---------------------------------cEEEEECC
Q 003271 683 -------------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVE 710 (835)
Q Consensus 683 -------------------i~~l~fsp~~~~ll~~s~dg---------------------------------~I~IwDl~ 710 (835)
+..++|+|++++|++++.|+ .|++||+.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 36799999999999988765 78999998
Q ss_pred C-CeEEEEEc--CCCCCeEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCcceEEEeecCCC----ceEEEEEeCC
Q 003271 711 T-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPT 777 (835)
Q Consensus 711 t-~~~i~~l~--~h~~~I~sl~fspdg~~Lasgs------Dg~I~IwDl~t~~~~~~i~~l~~~~~----~V~sv~fspd 777 (835)
+ ++...... .|...+.+++| |||++|+++. +..|++||+.++ .+...+..+.. .+..++|+|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---QQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC---CEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC---ceEEEEEcCCCCcCCcCCceEECCC
Confidence 8 77655443 37778999999 9999998765 348999999987 34444433332 3468899999
Q ss_pred CCEEEEEEcCCeEEEEEcC-CCcEEEeccCCCCeeEE-EEeCCCCEEEE-EECCC--cEEEeC
Q 003271 778 FPSLLVIGCYETLELWNMT-ENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 835 (835)
Q Consensus 778 g~~L~sgs~dg~I~IwDl~-~~~~~~l~~h~~~V~~l-a~spdg~~LaS-gs~DG--~V~IWd 835 (835)
|+++++++.++.+.||.+. ++....+..|...|..+ .|+|+++.|+. ++.|+ .++||+
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 9988888888866666554 23355777888888887 59999987754 44555 888884
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=2.4e-22 Score=243.05 Aligned_cols=270 Identities=11% Similarity=0.068 Sum_probs=203.7
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4789999999999999986 999999999872 3445677888999999999999999987 46899999987653 33
Q ss_pred EeecCCCC----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------cEE
Q 003271 635 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 666 (835)
Q Consensus 635 ~~~~h~~~----------------V~sl~fsp~g~~ll~sgs~Dg--------------------------------~I~ 666 (835)
....+... +.++.|+|+|+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987765544321 789
Q ss_pred EEECCC-CeeeeEee-----cCceEEEEecCCCEEEEEEc-----CCcEEEEECCCCeEEEEEcCCCC----CeEEEEEc
Q 003271 667 YWSINN-GSCAGVFK-----SGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 731 (835)
Q Consensus 667 iwDl~s-~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~-----dg~I~IwDl~t~~~i~~l~~h~~----~I~sl~fs 731 (835)
+||+.+ ++...... ..+..++| |++..|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77654432 23778999 99999998775 46799999999988776665443 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEEcCC-Cc-EEEec
Q 003271 732 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS 804 (835)
Q Consensus 732 pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv-~fspdg~~L~sgs~dg---~I~IwDl~~-~~-~~~l~ 804 (835)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +. ...+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888877 8888888776321 3 66777777788887 5999999887666544 889998753 44 33444
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECC----CcEEEe
Q 003271 805 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 834 (835)
Q Consensus 805 ~h~~~V~~la~spdg~~LaSgs~D----G~V~IW 834 (835)
. ...+..++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 4 6778899999999988766543 345555
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.8e-21 Score=210.60 Aligned_cols=293 Identities=12% Similarity=0.096 Sum_probs=205.4
Q ss_pred EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC-CeEEEEEcC-
Q 003271 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 585 (835)
Q Consensus 508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~- 585 (835)
++++++.|+.|.+|..... + ....+.. ..|...+.+++|+|+|++|++++.+ +.|.+|+++
T Consensus 7 l~~~~~~~~~v~~~~~~~~---------------~-~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHE---------------G-ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTT---------------S-CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCC---------------C-cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 4455577899999944221 0 1122222 2466789999999999999988876 999999997
Q ss_pred -CCe--EEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271 586 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (835)
Q Consensus 586 -t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sg 659 (835)
+++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.++. .....+. ....+.+++|+|+++.+++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence 544 445555444 7899999999998877765 8899999995222 1223333 345689999999998777666
Q ss_pred eCCCcEEEEECCC-Ceeee----Eee----cCceEEEEecCCCEEEEEE-cCCcEEEEECCC--CeE--EEEEcC---C-
Q 003271 660 DNNSEIRYWSINN-GSCAG----VFK----SGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQG---H- 721 (835)
Q Consensus 660 s~Dg~I~iwDl~s-~~~~~----~~~----~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~~---h- 721 (835)
..++.|++||+.+ ++... .+. ..+..++|+|++.++++++ .++.|.+||+.. ++. ...+.. .
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 5899999999987 65432 122 2467799999999887776 679999999953 322 222221 1
Q ss_pred --CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEc
Q 003271 722 --KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNM 795 (835)
Q Consensus 722 --~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl 795 (835)
...+.+++|+|+|++|+++. ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|++
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 24577899999999887554 889999999842 12244555554444 88999999999999888 5789999954
Q ss_pred --CCCcEE--EeccCCCCeeEEEEeCCCC
Q 003271 796 --TENKTL--TLSAHDKLVSSLAASTVNG 820 (835)
Q Consensus 796 --~~~~~~--~l~~h~~~V~~la~spdg~ 820 (835)
.+++.. ..........+++|.++.+
T Consensus 307 d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 307 VGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp ETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred cCCCceeeEccccccCCCCeeEEEEcccC
Confidence 466543 2222235677888887654
No 137
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=2e-22 Score=212.21 Aligned_cols=252 Identities=11% Similarity=0.079 Sum_probs=193.5
Q ss_pred EEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-CCceeEEeecC-CCCeEEEEEc
Q 003271 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH 649 (835)
Q Consensus 572 sgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-~~~~~~~~~~h-~~~V~sl~fs 649 (835)
.++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...|.+++|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence 34678999999999988764 446889999999999999999987 78999999998 654 4444444 4678999999
Q ss_pred CCCCcEEEEEe-CC--CcEEEEECCCCeeeeEe-ecCceEEEEecCCCEEE-EEEcCCcEEEEECC--CCeEEEEEcCCC
Q 003271 650 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVF-KSGATQMRFQPRLGRIL-AAAIENYISILDVE--TQVCRLKLQGHK 722 (835)
Q Consensus 650 p~g~~ll~sgs-~D--g~I~iwDl~s~~~~~~~-~~~i~~l~fsp~~~~ll-~~s~dg~I~IwDl~--t~~~i~~l~~h~ 722 (835)
|+++.+++++. .+ ..|.+|++.++...... ...+..++|+|++..++ ++..++.+.||+++ ++. ...+..+.
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 172 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGE 172 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCC
Confidence 99886654442 22 45555565555432222 13477889999999887 66788988888853 443 45566688
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------Ce
Q 003271 723 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------ET 789 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----------g~ 789 (835)
..+.+++|+|++++|++++ ++.++||++.... ..+..+..+...+..++|+|++++|++++.+ ..
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 8999999999999887665 7889999886321 4556677777889999999999999988876 46
Q ss_pred EEEEEcCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271 790 LELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 790 I~IwDl~~~~~~---~l~~h~~~V~~la~spdg~~LaSgs~DG 829 (835)
|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999988754 3447888999999999999988887664
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.3e-21 Score=211.81 Aligned_cols=290 Identities=11% Similarity=0.086 Sum_probs=210.7
Q ss_pred CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEc
Q 003271 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 584 (835)
Q Consensus 506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~ 584 (835)
..++++.+.++.|.+|..... .....+..+...+ +++|+|||++|++++. ++.|.+||+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred CEEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 456778888899999943222 1223334455667 9999999997766665 899999999
Q ss_pred CCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCC---eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271 585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 585 ~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg---~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
.+++. ...+..+..++.+++|+|++++|+++..++ .|.+||+.+++. +..+. +...+.+++|+|+++.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEE
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEec
Confidence 99887 777777777766699999999999655553 899999998664 44444 3456799999999988888888
Q ss_pred CCCc-EEEEECCCCeeee-----Eee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeE---EEEEcCCCCCeEEE
Q 003271 661 NNSE-IRYWSINNGSCAG-----VFK--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQGHKNQVHSV 728 (835)
Q Consensus 661 ~Dg~-I~iwDl~s~~~~~-----~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~---i~~l~~h~~~I~sl 728 (835)
.++. |.+|++.....+. .+. .....++|+|+++++++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTI 226 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCE
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceE
Confidence 7788 9999997643321 111 3477899999999877776 478999999998877 766663 4667899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCC
Q 003271 729 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTEN 798 (835)
Q Consensus 729 ~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~----~~---~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~ 798 (835)
+|+|+|++|+++. ++.|.+||+.++.. ..+..+..+ .. ....++|+|++++|++++.+ +.|.+||+.+.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999999887765 67899999988632 113333322 11 22458999999999877765 59999999887
Q ss_pred cEEEeccCCCCeeEEEEeCCC
Q 003271 799 KTLTLSAHDKLVSSLAASTVN 819 (835)
Q Consensus 799 ~~~~l~~h~~~V~~la~spdg 819 (835)
........+..-....++|+.
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC-
T ss_pred cccceecccccCCeEEECCcc
Confidence 765555544433333444443
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.1e-21 Score=211.56 Aligned_cols=260 Identities=11% Similarity=0.069 Sum_probs=203.5
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccCCC--CeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEee-cC----
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 639 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~--~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~-~h---- 639 (835)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++. +..+. .+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999999888763332 488999999998765 455578999999998764 33333 22
Q ss_pred CCCeEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCCcEEE
Q 003271 640 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENYISI 706 (835)
Q Consensus 640 ~~~V~sl~fsp~g~~ll~sgs-----------~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~I 706 (835)
...+.+++|+|+++.++++.. .++.|++||+.+++.+..+.. .+..++|+|++++++++ ++.|++
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 226778999999886665531 479999999999988776653 47789999999988887 789999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC-----------------------eEEEEEcCCCCCcceEEE
Q 003271 707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 707 wDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg-----------------------~I~IwDl~t~~~~~~i~~ 761 (835)
||+.+++.+..+..+.. ...+.|+|++.+|+... ++ .|.+||+.+++.. ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999988877765431 11337899988776554 22 4689999887421 344
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 762 l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+..+...+..++|+|++++|+++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 55566778899999999999888 6899999999998875555556789999999999999999999999996
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=5.5e-22 Score=233.55 Aligned_cols=267 Identities=9% Similarity=0.049 Sum_probs=208.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEEC---CCeEEEEecCC-
Q 003271 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA---DRTVRVWDTEN- 628 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t- 628 (835)
..+|++++|+|||++||+++. ||++.||++++++... +..|. ..|.+++|+|| +++++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 456999999999999999887 9999999997776654 44454 68999999999 78887775 45566665543
Q ss_pred -CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcC----Cc
Q 003271 629 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE----NY 703 (835)
Q Consensus 629 -~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~d----g~ 703 (835)
..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.+++.......+...++|+|+|..+++++.+ ..
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeE
Confidence 22222 33322 2355678999987766666666667799999998777666556899999999999988877 77
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC--eEEEEEcCCCCCcceEEEeecCCCceEEEE-------
Q 003271 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV------- 773 (835)
Q Consensus 704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~------- 773 (835)
|++||+.+++.. .+..|...+.+++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccce
Confidence 999999988765 5677888899999999999999766 77 8999999887 444 5666666666666
Q ss_pred -EeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc---EEEeC
Q 003271 774 -FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 835 (835)
Q Consensus 774 -fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~---V~IWd 835 (835)
|+|+|..+++++.++.++||++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888999999999999 66554 345778999999 9999998887754 66654
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=6.4e-22 Score=208.26 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=183.9
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeccC-CCCeEEEEECCCCCEEEEEE--CCCeEEEEe
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWD 625 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h-~~~V~sv~fspdg~~Latgs--~Dg~I~IWD 625 (835)
.+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++|+|++++|++++ .++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 3456788999999999999999987 78999999999 8877766666 36789999999999999999 345556665
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEe--ecCceEEEEecCCCEEEEEEc-
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVF--KSGATQMRFQPRLGRILAAAI- 700 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl--~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~- 700 (835)
++........+..+ ..+.+++|+|+++.+++++..++.+++|++ .+++..... ...+.+++|+|++..+++++.
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 115 LPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp EETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred EECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 54222224444444 348999999999988878888999999985 444433222 245789999999998888774
Q ss_pred CCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C-----------CeEEEEEcCCCCCcceEEEeecCCC
Q 003271 701 ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 701 dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D-----------g~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
++.+.+|++. .+..+..+..|...+.+++|+|+|++|++++ + +.|++||+.++.. ..+..+..+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCc
Confidence 8889999886 4556667777888899999999999998877 4 4699999987632 34555667788
Q ss_pred ceEEEEEeCCCCEEEEEEcCC
Q 003271 768 KFHSCVFHPTFPSLLVIGCYE 788 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg 788 (835)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 899999999999999888764
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=1.8e-22 Score=243.31 Aligned_cols=273 Identities=14% Similarity=0.152 Sum_probs=205.2
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEECC---------CeEEEE
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 624 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~---~V~sv~fspdg~~Latgs~D---------g~I~IW 624 (835)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 7899999999999988888877765 49999999999999999874 788999
Q ss_pred ecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---c-----------------
Q 003271 625 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---A----------------- 683 (835)
Q Consensus 625 Dl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i----------------- 683 (835)
|+.++... +.....|...+.+++|+|+|+.++++. ++.|++||+.+++.......+ +
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99987641 112223445588999999998666544 479999999988776554321 2
Q ss_pred -eEEEEecCCCEEEEEEcCC----------------------------------cEEEEECCCCeEEEEEcCC------C
Q 003271 684 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 722 (835)
Q Consensus 684 -~~l~fsp~~~~ll~~s~dg----------------------------------~I~IwDl~t~~~i~~l~~h------~ 722 (835)
..++|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 6799999999999988653 7999999988765556544 5
Q ss_pred CCeEEEEEcCCCCEEEEEe-C----CeEEEEEcCCCCCcceEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 003271 723 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 788 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs-D----g~I~IwDl~t~~~~~~i~~l~~-~~~~V----~sv~fspdg~~L~sg--s~dg-- 788 (835)
..+.+++|+|||++|++.. . ..|++||+.++ .+...+.. +...+ ..++|+|+|+.|++. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC---cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999987765 2 47999999887 34333322 22333 378999999987764 4555
Q ss_pred ----eEEEEE-cCCCc---EEEeccCCCCeeE-EEEeCCCCEEEEEECC---CcEEEeC
Q 003271 789 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 835 (835)
Q Consensus 789 ----~I~IwD-l~~~~---~~~l~~h~~~V~~-la~spdg~~LaSgs~D---G~V~IWd 835 (835)
.|++|| ..++. ...+..+...+.. ++|+||++.|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577788 45555 4455444445554 6999999998776655 7888884
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=3.4e-21 Score=231.76 Aligned_cols=272 Identities=12% Similarity=0.091 Sum_probs=206.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-----C
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P 629 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-----~ 629 (835)
...|.+++|+|| ++++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 457999999999 6666554 59999999999876544 4567789999999999999985 689999999997 6
Q ss_pred CceeEEeecCCCC--------------eEEEEEcCCCCcEEEEEe--------------------------------CCC
Q 003271 630 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS 663 (835)
Q Consensus 630 ~~~~~~~~~h~~~--------------V~sl~fsp~g~~ll~sgs--------------------------------~Dg 663 (835)
.. ......+... +.++.|+|+|+.+++++. .+.
T Consensus 157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 53 3333333332 489999999986665541 346
Q ss_pred cEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCC-----cEEEEECCCC-eEEEEEcC-CCC---CeEEE
Q 003271 664 EIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSV 728 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~-~~i~~l~~-h~~---~I~sl 728 (835)
.|++||+.+++...... ..+..++|+|+++.|++++.++ .|++||+.++ ........ +.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 89999999988655442 2367899999999999988775 8999999998 44333322 222 24678
Q ss_pred EEcC--CCCEEEEEe-CCeEEEEEcC-CCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEEcCCC
Q 003271 729 CWNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTEN 798 (835)
Q Consensus 729 ~fsp--dg~~Lasgs-Dg~I~IwDl~-t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~dg-----~I~IwDl~~~ 798 (835)
+|+| +|++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.++
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 9999 999998888 8888899886 33 566677777777876 79999999888776653 6778888887
Q ss_pred cEEEeccCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003271 799 KTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 835 (835)
Q Consensus 799 ~~~~l~~h~~~V~~la~spdg~~LaSgs~D----G~V~IWd 835 (835)
+...+ .|...+.+++|+||+++|+.++.+ +.|++||
T Consensus 393 ~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 393 KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 75444 477789999999999988876544 4599985
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=3.9e-21 Score=242.26 Aligned_cols=276 Identities=9% Similarity=0.078 Sum_probs=217.1
Q ss_pred EEEecCCCCCE-------EEEEEeCCCCEEEEEeCC------CeEEEEEcCCCeEE------------------------
Q 003271 548 FQLIPASTSKV-------ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVK------------------------ 590 (835)
Q Consensus 548 i~~l~gH~~~V-------~sl~fSpdg~~Lasgs~D------g~I~VWd~~t~~~i------------------------ 590 (835)
...+..|...+ .+++|+|||+++++++.+ ..|++|++.+++..
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 45667788878 999999999977777754 35788887655432
Q ss_pred -------------------------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271 591 -------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (835)
Q Consensus 591 -------------------------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s 645 (835)
..+.+|...+.++.|+++ .++++++.|+.+.||.+.........+..|. .+.+
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 123457778888999888 6777888889999998764333355566555 4677
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------------CceEEEEe-cCCCEEEEEEcCCcEEEEECC
Q 003271 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------------GATQMRFQ-PRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------------~i~~l~fs-p~~~~ll~~s~dg~I~IwDl~ 710 (835)
++|+|+|+.++++ .++.|++||+...... .+.. .+..++|+ |++..+++++ ++.|++|++.
T Consensus 250 ~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 250 RHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 8999999866654 4899999999544333 4433 58899999 9999888887 7899999999
Q ss_pred CCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe-CCeEE-EEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 711 TQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVR-VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 711 t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs-Dg~I~-IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
.+.... +..|.. .+.+++|+ +|+.|+.++ ++.|. +||+.++ . ...+..+...+..++|+|++++|++++.+
T Consensus 326 ~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~---~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~ 399 (1045)
T 1k32_A 326 GTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG---K-AEKFEENLGNVFAMGVDRNGKFAVVANDR 399 (1045)
T ss_dssp SSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC---C-EEECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred CCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC---C-ceEecCCccceeeeEECCCCCEEEEECCC
Confidence 877554 566777 89999999 999999888 66788 8898775 2 23444677889999999999999999999
Q ss_pred CeEEEEEcCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCC----------cEEEeC
Q 003271 788 ETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK----------CVKIWK 835 (835)
Q Consensus 788 g~I~IwDl~~~~~~~l~-~h~~~V~~la~spdg~~LaSgs~DG----------~V~IWd 835 (835)
+.|++||+.+++...+. .|...|.+++|+|||++|++++.++ .|++||
T Consensus 400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 99999999999887554 8999999999999999998887654 899996
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=5.9e-21 Score=205.96 Aligned_cols=266 Identities=11% Similarity=0.086 Sum_probs=202.8
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCC-CEEEEEEeCCCCEEE-EEeCCCeEEEEE
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC 583 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~-~V~sl~fSpdg~~La-sgs~Dg~I~VWd 583 (835)
.++++++.++.|.+|..... ..+..+. ++.. .+.+++|+|||++|+ ++..++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 47888999999999943221 1222232 2222 478899999998764 555678999999
Q ss_pred cCCCeEEEEeccC-----CCCeEEEEECCCCCEEEEEE------------CCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271 584 TESFTVKSTLEEH-----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (835)
Q Consensus 584 ~~t~~~i~~l~~h-----~~~V~sv~fspdg~~Latgs------------~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl 646 (835)
+.+++.+..+... ...+.+++|+|++++|++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence 9999988776532 22678899999999999886 579999999987653 444443 4568889
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc--eEEEEecCCCEEEEEEcCC----------------------
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA--TQMRFQPRLGRILAAAIEN---------------------- 702 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i--~~l~fsp~~~~ll~~s~dg---------------------- 702 (835)
+|+|+++.++++ ++.|++||+.+++.+..+..+. ..+.|+|++..+++.+..+
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999999876655 6899999999999887766432 4557888887665554332
Q ss_pred --cEEEEECCCCeEE-EEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271 703 --YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779 (835)
Q Consensus 703 --~I~IwDl~t~~~i-~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~ 779 (835)
.|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSC
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCC
Confidence 4789999988764 3344566788899999999999888 799999999887 55555543 45678999999999
Q ss_pred EEEEEEcCCeEEEEEcCCCcEE
Q 003271 780 SLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 780 ~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
+|++++.++.|++||+.+++.+
T Consensus 293 ~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEcCCCcEEEEECcCCcEE
Confidence 9999988999999999999877
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.1e-21 Score=232.42 Aligned_cols=297 Identities=12% Similarity=0.088 Sum_probs=206.3
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCC---CEEEEEEeCCCCEEEEEeCC-------
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD------- 576 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sl~fSpdg~~Lasgs~D------- 576 (835)
.++++ +.|+.|++|....+ .....+.+|.. .|.+++|||||++|++++.+
T Consensus 29 ~~~~~-~~dg~i~~~d~~~g-------------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 29 EFIYR-EQKGTVRLWNVETN-------------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CBCCC-CSSSCEEEBCGGGC-------------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cEEEE-eCCCCEEEEECCCC-------------------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 35554 57788888833222 12334455554 49999999999999999864
Q ss_pred --CeEEEEEcCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe--------
Q 003271 577 --KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-------- 643 (835)
Q Consensus 577 --g~I~VWd~~t~~~i~~l~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V-------- 643 (835)
+.|++||+.+++. ..+. .|...+.+++|+|||++|++++. +.|++||+.++.. ......+...+
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence 7888999998876 3333 45556899999999999999986 7899999998764 44444333333
Q ss_pred ----------EEEEEcCCCCcEEEEEeCC---------------------------------CcEEEEECCCCeeeeEee
Q 003271 644 ----------MSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK 680 (835)
Q Consensus 644 ----------~sl~fsp~g~~ll~sgs~D---------------------------------g~I~iwDl~s~~~~~~~~ 680 (835)
.+++|+|+|+.++++...+ ..|++||+.++++...+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 7899999998766554322 279999999887544443
Q ss_pred ---------cCceEEEEecCCCEEEEEEcC----CcEEEEECCCCeEEEEEcC-CCCCe----EEEEEcCCCCEEEEE-e
Q 003271 681 ---------SGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S 741 (835)
Q Consensus 681 ---------~~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~~i~~l~~-h~~~I----~sl~fspdg~~Lasg-s 741 (835)
..+..++|+|++..+++.... ..|++||+.++++...+.. +...+ .+++|+|||+.|+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 236779999999887666543 5799999999887766543 33443 378999999977754 3
Q ss_pred --CC------eEEEEEcCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEEcCCC---cEEEecc-
Q 003271 742 --DE------LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA- 805 (835)
Q Consensus 742 --Dg------~I~IwDl~t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~d---g~I~IwDl~~~---~~~~l~~- 805 (835)
++ .|++||+..+....+...+..+...+.. ++|+|+++.|++.+.+ +.++||++... +...+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 405 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD 405 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence 66 4666663232210013334333344544 6999999999877766 68899988643 2223433
Q ss_pred --CCCCeeEEEEeCCCCEEEEEE
Q 003271 806 --HDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 806 --h~~~V~~la~spdg~~LaSgs 826 (835)
|...+..++|+||+++|+..+
T Consensus 406 ~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 406 LVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSSSCCCCEEEECTTSSEEEEEC
T ss_pred ccCCCCeEEEEECCCCCEEEEEc
Confidence 677899999999999877654
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=5.8e-21 Score=240.68 Aligned_cols=276 Identities=8% Similarity=-0.002 Sum_probs=223.5
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
...+.+|.+.|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+.+++|+|||++|+++. ++.|++||+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecC
Confidence 4455899999999999998 6777888889999998653 34445565565 467789999999998884 899999999
Q ss_pred CCCCceeEEeec-----------CCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeEee--c-CceEEEEecC
Q 003271 627 ENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--S-GATQMRFQPR 691 (835)
Q Consensus 627 ~t~~~~~~~~~~-----------h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~-~i~~l~fsp~ 691 (835)
.... +..+.. |...|.+++|+ |+|+.+++++ ++.|++|++..++...... . .+..++|+ +
T Consensus 273 ~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 273 DTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred CceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence 5432 334443 34468999999 9988666544 8899999998876544221 2 46778899 9
Q ss_pred CCEEEEEEcCCcEE-EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCce
Q 003271 692 LGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 769 (835)
Q Consensus 692 ~~~ll~~s~dg~I~-IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V 769 (835)
+..+++++.++.+. +||+.+++.... .+|...+.+++|+|||++|++++ ++.|++||+.++ .....+..|...+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v 423 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCC
T ss_pred CCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCc
Confidence 88999988888898 999988765543 37888999999999999999988 889999999887 5555555788889
Q ss_pred EEEEEeCCCCEEEEEEcCC----------eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 770 HSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg----------~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..++|+|+|++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|++++.++...+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999998887654 89999999998778889999999999999999999999888877774
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=6.1e-20 Score=200.75 Aligned_cols=257 Identities=11% Similarity=0.106 Sum_probs=181.5
Q ss_pred CCeEEEEEc--CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCc-eeEEeecCCCCeEEEEE
Q 003271 576 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF 648 (835)
Q Consensus 576 Dg~I~VWd~--~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl~f 648 (835)
++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|++||+.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777755 4565543 3334556788899999999 555554 68999999976553 23344556778899999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCC-Ce--eeeEeec------------CceEEEEecCCCEEEEEE-cCCcEEEEECC-C
Q 003271 649 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKS------------GATQMRFQPRLGRILAAA-IENYISILDVE-T 711 (835)
Q Consensus 649 sp~g~~ll~sgs~Dg~I~iwDl~s-~~--~~~~~~~------------~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~-t 711 (835)
+|+++.+++++..++.|.+|++.. +. .+..+.. .+..++|+|+++ ++++. .++.|.+||+. +
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCC
Confidence 999987776666889999999963 32 2333322 256799999999 55554 57889999998 5
Q ss_pred CeEE--EEEcC-CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CcceEEEeecCC------CceEEEEEeCCCC
Q 003271 712 QVCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTG------NKFHSCVFHPTFP 779 (835)
Q Consensus 712 ~~~i--~~l~~-h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~-~~~~i~~l~~~~------~~V~sv~fspdg~ 779 (835)
++.. ..+.. ....+..++|+|+|++|++++ ++.|.+|++.... ....+..+.... ..+..++|+|+|+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 5433 22222 334678899999999777765 7899999987521 112233333322 4588999999999
Q ss_pred EEEEEE-cCCeEEEEEcCCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 003271 780 SLLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 834 (835)
Q Consensus 780 ~L~sgs-~dg~I~IwDl~~~---~~~-~l~~h~~~V~~la~spdg~~LaSgs~D-G~V~IW 834 (835)
+|++++ .++.|.+|++... +.+ .+..+...+.+++|+||+++|++++.+ +.|.+|
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 886554 5789999999732 233 445566778999999999988888764 899999
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.86 E-value=1.4e-19 Score=197.93 Aligned_cols=248 Identities=14% Similarity=0.156 Sum_probs=182.3
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEec
Q 003271 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 626 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl 626 (835)
.+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446678899999999 555543 6899999998766 4455556778899999999999999888 6799999999
Q ss_pred CCCCc--eeEEeec---------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeE--ee----cCceEEEE
Q 003271 627 ENPDY--SLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK----SGATQMRF 688 (835)
Q Consensus 627 ~t~~~--~~~~~~~---------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~~~--~~----~~i~~l~f 688 (835)
..... .+..+.. +...+.+++|+|+++ +++++..++.|++||+. +++.... +. .....++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 64322 1222221 123488999999998 88888888999999998 5543321 11 24667999
Q ss_pred ecCCCEEEEEE-cCCcEEEEECCC--CeE--EEEEcCCC------CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003271 689 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 755 (835)
Q Consensus 689 sp~~~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~~h~------~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~ 755 (835)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 468999999874 443 22333222 4588999999999885544 88999999974323
Q ss_pred cceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--EcCCCcEEE
Q 003271 756 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTLT 802 (835)
Q Consensus 756 ~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~Iw--Dl~~~~~~~ 802 (835)
...+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 35566666667778999999999999998875 799999 555677653
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=5.9e-20 Score=199.36 Aligned_cols=268 Identities=9% Similarity=0.043 Sum_probs=191.7
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEE-EECCCeEEEEecCCCCceeEEee
Q 003271 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFT 637 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Lat-gs~Dg~I~IWDl~t~~~~~~~~~ 637 (835)
++++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|+++++++ +..++.|.+||+.+++. ...+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678889999999999999999999999988886543 25789999999986654 45689999999998764 33333
Q ss_pred -cC-----CCCeEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCee---eeEee--cCceEEEEecCCCEE
Q 003271 638 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGSC---AGVFK--SGATQMRFQPRLGRI 695 (835)
Q Consensus 638 -~h-----~~~V~sl~fsp~g~~ll~sgs~-----------Dg~I~iwDl~s~~~---~~~~~--~~i~~l~fsp~~~~l 695 (835)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++. +..+. ..+.+++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2337889999999866655533 48999999988443 33333 3477889999998 6
Q ss_pred EEEEcCCcEEEEECCCCeEEEEEcCCCC------------------------CeEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003271 696 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 749 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t~~~i~~l~~h~~------------------------~I~sl~fspdg~~Lasgs--Dg~I~IwD 749 (835)
+++ ++.|.+||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 44599999999988877653320 234566665543221111 11222355
Q ss_pred cCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271 750 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 750 l~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D 828 (835)
..++. ..+..+..+...+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|++++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 55442 12223334566788999999 99998888 889999999999987555455668899999999988888889
Q ss_pred CcEEEeC
Q 003271 829 KCVKIWK 835 (835)
Q Consensus 829 G~V~IWd 835 (835)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=4.3e-20 Score=204.51 Aligned_cols=285 Identities=12% Similarity=0.075 Sum_probs=204.4
Q ss_pred EEEEecCCCCCEEE-----EEEeCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271 547 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (835)
Q Consensus 547 ~i~~l~gH~~~V~s-----l~fSpdg~~Lasgs~-Dg--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D 618 (835)
++..+..|...+.. .+|+|||++|++++. ++ .|.+||+.+++......++...+.+++|+||++.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 45556677766666 889999999998887 66 48889999998887777777766678899999999999999
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEE--EcCCCCcEEEEE---------------------eCCCcEEEEECCCCee
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC 675 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~--fsp~g~~ll~sg---------------------s~Dg~I~iwDl~s~~~ 675 (835)
+.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999998764 444455555554444 488887554321 2346899999999876
Q ss_pred eeEeec--CceEEEEec-CCCEEEEEEcC------CcEEEEECCCCeEEEEEcCCC--CCeEEEEEcCCCCEEEEEe--C
Q 003271 676 AGVFKS--GATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--D 742 (835)
Q Consensus 676 ~~~~~~--~i~~l~fsp-~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~--~~I~sl~fspdg~~Lasgs--D 742 (835)
...... .+..+.|+| +++.|+.+..+ ..|.++|+..+... .+..+. ..+..++|+|||+.|+..+ +
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 555443 378899999 99888887764 37888888765543 333333 3577899999999776654 3
Q ss_pred C----eEEEEEcCCCCCcceEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEEcCCCcEEEeccC
Q 003271 743 E----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAH 806 (835)
Q Consensus 743 g----~I~IwDl~t~~~~~~i~~l~~~~~~---V~sv~fspdg~~L~sg---------s~dg~I~IwDl~~~~~~~l~~h 806 (835)
+ .|++||+.++.. ..+..+..+... ...++|+|+|+.|++. ..+..|++||+.+++...+..|
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 3 399999988742 233333221000 1113799999988865 3455899999999988777777
Q ss_pred CC-----------CeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 003271 807 DK-----------LVSSLAASTVNGMVASAS-HDKCVKIW 834 (835)
Q Consensus 807 ~~-----------~V~~la~spdg~~LaSgs-~DG~V~IW 834 (835)
.. .+.+++|+|||+.|+.++ .+|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 688899999999777665 57777776
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=7.4e-19 Score=193.40 Aligned_cols=260 Identities=12% Similarity=0.093 Sum_probs=188.4
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCC----CeEEEEEcCC--CeE--EEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEE
Q 003271 554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 624 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~D----g~I~VWd~~t--~~~--i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IW 624 (835)
|...+..++|+|||++|++++.+ +.|.+|+++. ++. +..+..+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999999876 7999998765 443 3444445667788888 888887777 57899999
Q ss_pred ecCCCCcee---EE--eec--------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee------e------eE-
Q 003271 625 DTENPDYSL---RT--FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------A------GV- 678 (835)
Q Consensus 625 Dl~t~~~~~---~~--~~~--------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~------~------~~- 678 (835)
++....... .. ..+ +...+.+++|+|+++.+++++..++.|++|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543211 11 111 1234588999999998888877789999999875431 1 11
Q ss_pred -ee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeE--EEEEc---CCCCCeEEEEEcCCCCEEEEEe-C--CeEE
Q 003271 679 -FK--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASVS-D--ELVR 746 (835)
Q Consensus 679 -~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~--i~~l~---~h~~~I~sl~fspdg~~Lasgs-D--g~I~ 746 (835)
.. .....++|+|+++++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|||++|+++. + +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 11 3367899999999988888 589999999987754 22232 2345678999999999987766 5 6899
Q ss_pred EEEcCCC-CCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--EcCCCcEEEec--cCCCCeeEEEEe
Q 003271 747 VWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVSSLAAS 816 (835)
Q Consensus 747 IwDl~t~-~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~~l~--~h~~~V~~la~s 816 (835)
+|++... .....+..+.. ...+..++|+|++++|++++ .++.|.+| |..++++..+. .+...+.||+|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9999632 12234555554 56788999999999999988 56789996 55577766443 344678899886
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=4.8e-19 Score=192.76 Aligned_cols=233 Identities=9% Similarity=0.085 Sum_probs=189.5
Q ss_pred CCCeEEEEECCCCCEEEEEEC-------CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271 597 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~-------Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD 669 (835)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+.+++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456889999999999888874 56899999998764 444443 345788999999998888888889999999
Q ss_pred CCCCeeeeEeecC------------ceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271 670 INNGSCAGVFKSG------------ATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 735 (835)
Q Consensus 670 l~s~~~~~~~~~~------------i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~ 735 (835)
+.+++.+..+..+ ...++|+|+++.+++++. ++.|.+||+.+++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9999988777642 477999999999888873 68899999999999988876666788999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCcceEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEeccCCCC
Q 003271 736 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 809 (835)
Q Consensus 736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~----~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~ 809 (835)
+|++++ ++.|.+||+.++ +.+..+.. +...+..++|+|++++|++++.+ +.|.+||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 899999999887 55555543 45568889999999988888765 799999999998874333222
Q ss_pred eeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271 810 VSSLAASTVNGMVASAS-HDKCVKIWK 835 (835)
Q Consensus 810 V~~la~spdg~~LaSgs-~DG~V~IWd 835 (835)
..+++|+|++++++.++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999665555 689999996
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=7.6e-19 Score=193.30 Aligned_cols=264 Identities=9% Similarity=0.074 Sum_probs=187.7
Q ss_pred CCEEEEEe----CCCeEEEEEc--CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC----CeEEEEecCCC--Cc-ee
Q 003271 567 GKLLATGG----HDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-SL 633 (835)
Q Consensus 567 g~~Lasgs----~Dg~I~VWd~--~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D----g~I~IWDl~t~--~~-~~ 633 (835)
..++++|+ .++.|.+|++ ++++.......+...+..++|+|++++|++++.+ +.|.+|++... .. .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34556664 3568999866 4555443222267778889999999999999886 79999998764 21 12
Q ss_pred EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------e-----------cCceEEEEecCCCEEE
Q 003271 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------K-----------SGATQMRFQPRLGRIL 696 (835)
Q Consensus 634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~-----------~~i~~l~fsp~~~~ll 696 (835)
.....+...+..+++ +++.++++...++.|.+|++.....+..+ . .++.+++|+|++++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 333445567788888 67777777767899999999754332211 1 1236799999999888
Q ss_pred EEEc-CCcEEEEECCCCe-------E------EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEE
Q 003271 697 AAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 760 (835)
Q Consensus 697 ~~s~-dg~I~IwDl~t~~-------~------i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~ 760 (835)
+++. ++.|.+|++.... . ......+...+.+++|+|+|++|+++. ++.|.+||+.++.. ..+.
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~ 249 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQ 249 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeE
Confidence 7775 7899999887533 1 122233556788999999999887776 78999999986521 2233
Q ss_pred Eee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEEcC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CCC
Q 003271 761 ELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDK 829 (835)
Q Consensus 761 ~l~---~~~~~V~sv~fspdg~~L~sgs~d--g~I~IwDl~--~~~~~---~l~~h~~~V~~la~spdg~~LaSgs-~DG 829 (835)
.+. .+...+..++|+|++++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+|||++|++++ .++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 332 233557899999999999887765 799999996 45532 2323 56789999999999888887 678
Q ss_pred cEEEe
Q 003271 830 CVKIW 834 (835)
Q Consensus 830 ~V~IW 834 (835)
.|.+|
T Consensus 329 ~v~v~ 333 (361)
T 3scy_A 329 VIQIF 333 (361)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 89996
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.2e-19 Score=218.06 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=182.9
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-----CeEEEEeccCCCC--------------eEEEEECCCCCE
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLSR 611 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----~~~i~~l~~h~~~--------------V~sv~fspdg~~ 611 (835)
+..|...+.+++|||||++|+++ .|+.|++||+.+ ++.......+... +.+++|+|||++
T Consensus 116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~ 194 (706)
T 2z3z_A 116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC 194 (706)
T ss_dssp EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence 44567778999999999999985 689999999998 7766555444443 489999999999
Q ss_pred EEEEE---------------------------------CCCeEEEEecCCCCceeEEe--ecCCCCeEEEEEcCCCCcEE
Q 003271 612 LATSS---------------------------------ADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLL 656 (835)
Q Consensus 612 Latgs---------------------------------~Dg~I~IWDl~t~~~~~~~~--~~h~~~V~sl~fsp~g~~ll 656 (835)
|++++ .+..|++||+.++.. .... ..|...+.+++|+|+++.++
T Consensus 195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCCCEEE
Confidence 99998 447899999987653 2222 24667899999999998666
Q ss_pred EEEeCCC-----cEEEEECCCC-eeeeEee--cC-----ceEEEEec--CCCEEEEEEcCCcEEEEECC-CCeEEEEEcC
Q 003271 657 CSCDNNS-----EIRYWSINNG-SCAGVFK--SG-----ATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQG 720 (835)
Q Consensus 657 ~sgs~Dg-----~I~iwDl~s~-~~~~~~~--~~-----i~~l~fsp--~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~ 720 (835)
+++ .++ .|++||+.++ ....... .. +..++|+| ++.+++++..++.+.||++. ++..+..+..
T Consensus 274 ~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 274 VAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 544 344 8999999998 4333322 11 35689999 98888888888888888876 5677777877
Q ss_pred CCCCeEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----Ce
Q 003271 721 HKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ET 789 (835)
Q Consensus 721 h~~~I~s-l~fspdg~~Lasgs--Dg----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d----g~ 789 (835)
+...+.+ ++|+|+|+.|+.++ ++ .|+.||+.++. ...+. +...+.+++|+|++++|++++.+ +.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 8778877 79999999887666 44 67777776652 22333 56678999999999988877554 46
Q ss_pred EEEEEcCCCc
Q 003271 790 LELWNMTENK 799 (835)
Q Consensus 790 I~IwDl~~~~ 799 (835)
|++||+.+++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 9999998887
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2.5e-19 Score=204.02 Aligned_cols=238 Identities=10% Similarity=0.090 Sum_probs=176.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-----------eEE-----EEeccCCCCeEEEEECCCCCEEE----E
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 614 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~i-----~~l~~h~~~V~sv~fspdg~~La----t 614 (835)
...+.++++++++.+|++++.|+ |+||+.... ... ..+ .|...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999887 888875311 111 112 3567899999999999999 7
Q ss_pred EECCCeEEEEecCCC-----Cc-----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---c
Q 003271 615 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---S 681 (835)
Q Consensus 615 gs~Dg~I~IWDl~t~-----~~-----~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~ 681 (835)
++.|+.|+|||+.+. .. .+..+.+|...|.+++|+|+...+|++++.||.|++||++++..+.... .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998754 11 2455677999999999999866789999999999999999886654433 4
Q ss_pred CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC-------CCCeEEEEEcCCCCEEEEEe--CC------eEE
Q 003271 682 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-------KNQVHSVCWNTSGEYLASVS--DE------LVR 746 (835)
Q Consensus 682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-------~~~I~sl~fspdg~~Lasgs--Dg------~I~ 746 (835)
.+.+++|+|++.+|++++.|+.|++||++ +.....+..| ...|.+++|++++.++++.+ +| .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 69999999999999999999999999998 5555555433 23799999999998887655 53 399
Q ss_pred EEEcCCCCC--cceEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEc
Q 003271 747 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 795 (835)
Q Consensus 747 IwDl~t~~~--~~~i~~l~-------~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl 795 (835)
+|+++.... ...+..+. ........+.+.++.+.+++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986532 12222221 1222334455557778777776643 4666554
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=222.44 Aligned_cols=269 Identities=12% Similarity=0.074 Sum_probs=199.4
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEEC---------CCeEEEEecC
Q 003271 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 627 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~---~V~sv~fspdg~~Latgs~---------Dg~I~IWDl~ 627 (835)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. |+.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 4699999999999998877766544 4899999999999999876 7899999999
Q ss_pred CCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---------------------ceE
Q 003271 628 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---------------------ATQ 685 (835)
Q Consensus 628 t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---------------------i~~ 685 (835)
+++... ..+ ...+.+++|+|+|+.++++ . ++.|++||+.++++......+ ...
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 865310 222 2568899999999876654 3 789999999888765433211 147
Q ss_pred EEEecCCCEEEEEEcCC----------------------------------cEEEEECCCCeEE---E-----EEcCCCC
Q 003271 686 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN 723 (835)
Q Consensus 686 l~fsp~~~~ll~~s~dg----------------------------------~I~IwDl~t~~~i---~-----~l~~h~~ 723 (835)
++|+|+|+.|++++.|. .|++||+.+++.. . .+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 1 1335788
Q ss_pred CeEEEEEcCCCCEEEEEe-C----CeEEEEE----cCCCCCcceEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 003271 724 QVHSVCWNTSGEYLASVS-D----ELVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 786 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-D----g~I~IwD----l~t~~~~~~i~-~l~~~~~~V~-----sv~fspdg~~L~sg--s~ 786 (835)
.+.+++|+||++++++.. . ..|.+|| +.++.....+. ....+...+. .+.|+|+|+.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 2 2588899 76653222221 0134555555 78999999976653 34
Q ss_pred CC--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-----CcEEEeC
Q 003271 787 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 835 (835)
Q Consensus 787 dg--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D-----G~V~IWd 835 (835)
++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888899888877777777778888888 88877766655 7788883
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=4.8e-18 Score=188.06 Aligned_cols=265 Identities=11% Similarity=0.064 Sum_probs=184.8
Q ss_pred EEEEEeCC--CeEEEEEc--CCCeEEE--Eec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecC-CCCceeEEeec-C
Q 003271 569 LLATGGHD--KKAVLWCT--ESFTVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 639 (835)
Q Consensus 569 ~Lasgs~D--g~I~VWd~--~t~~~i~--~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~-t~~~~~~~~~~-h 639 (835)
+|++|+.. +.|.+|++ ++++... ... .+...+..++|+|++++|++++.+ .|.+|++. +++. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45566653 56877764 5665432 221 234568899999999999999888 99999997 5543 222211 1
Q ss_pred CCCeEEEEEcCCCCc-EEEEEe-------------CCCcEEEEECC-CCeeeeEee-------cCceEEEEecCCCEEEE
Q 003271 640 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-------SGATQMRFQPRLGRILA 697 (835)
Q Consensus 640 ~~~V~sl~fsp~g~~-ll~sgs-------------~Dg~I~iwDl~-s~~~~~~~~-------~~i~~l~fsp~~~~ll~ 697 (835)
.+.+.+++|+|+++. ++++++ .++.+.+|++. .++....+. ..+..++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123567899999885 344543 68999999997 465543332 34788999999999888
Q ss_pred EEc-CCcEEEEECC-CCeEE--EEEc--CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC--CCCcceEEEee---c
Q 003271 698 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELS---C 764 (835)
Q Consensus 698 ~s~-dg~I~IwDl~-t~~~i--~~l~--~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t--~~~~~~i~~l~---~ 764 (835)
+.. ++.|++||+. +++.. ..+. .|...+..++|+|+|++|+++. ++.|.+|++.. +........+. .
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 775 5799999998 66543 3333 2466799999999999988876 67999998763 32100011222 1
Q ss_pred ----CCC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEEcC-CCcEEE----eccCCCCeeEEEEeC---CC
Q 003271 765 ----TGN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 819 (835)
Q Consensus 765 ----~~~------~V~sv~-fspdg~~L~sgs~dg------~I~IwDl~-~~~~~~----l~~h~~~V~~la~sp---dg 819 (835)
+.. .+..++ |+|+|++|+++..+. .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 111 588999 999999998876533 89999996 566543 233556678899999 89
Q ss_pred CEEEEEECC-CcEEEeC
Q 003271 820 GMVASASHD-KCVKIWK 835 (835)
Q Consensus 820 ~~LaSgs~D-G~V~IWd 835 (835)
++|++++.+ +.|.||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999998864 8999995
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=4e-19 Score=214.21 Aligned_cols=302 Identities=11% Similarity=0.049 Sum_probs=202.9
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCC---CEEEEEEeCCCCEEEEEeC--------
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH-------- 575 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sl~fSpdg~~Lasgs~-------- 575 (835)
.+++.+ .|++|.+|....+. ....+.+|.. .|.+++|||||++|++++.
T Consensus 28 ~~~~~~-~d~~i~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s 87 (719)
T 1z68_A 28 EYLHQS-ADNNIVLYNIETGQ-------------------SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYS 87 (719)
T ss_dssp EEEEEC-TTSCEEEEESSSCC-------------------EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSC
T ss_pred eEEEEc-CCCCEEEEEcCCCc-------------------EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEee
Confidence 455555 48899999443321 1223333332 4889999999999998876
Q ss_pred -CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe-----------
Q 003271 576 -DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV----------- 643 (835)
Q Consensus 576 -Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V----------- 643 (835)
++.|++||+.+++.+... .....+.+++|+|||+.|+++. |+.|++||+.++........++...|
T Consensus 88 ~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~e 165 (719)
T 1z68_A 88 YTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEE 165 (719)
T ss_dssp EEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHH
T ss_pred cceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeee
Confidence 789999999998773111 1135688999999999999986 78999999987764222223333322
Q ss_pred ------EEEEEcCCCCcEEEEEeCCC---------------------------------cEEEEECCCCeee---eE---
Q 003271 644 ------MSLDFHPSKEDLLCSCDNNS---------------------------------EIRYWSINNGSCA---GV--- 678 (835)
Q Consensus 644 ------~sl~fsp~g~~ll~sgs~Dg---------------------------------~I~iwDl~s~~~~---~~--- 678 (835)
.+++|+|||+.++++...++ .|++||+.+++.. ..
T Consensus 166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 48999999986665543322 7889999987653 11
Q ss_pred -----eecCceEEEEecCCCEEEEEEcC----CcEEEEE----CCCCeEEEEE----cCCCCCeE-----EEEEcCCCCE
Q 003271 679 -----FKSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL----QGHKNQVH-----SVCWNTSGEY 736 (835)
Q Consensus 679 -----~~~~i~~l~fsp~~~~ll~~s~d----g~I~IwD----l~t~~~i~~l----~~h~~~I~-----sl~fspdg~~ 736 (835)
....+..++|+|++..+++.... ..|.+|| +.++++...+ .+|...+. ++.|+|||+.
T Consensus 246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 11236789999996555554332 2488999 8777665444 35677676 8899999986
Q ss_pred EEE--Ee-CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCC--C--cEEE
Q 003271 737 LAS--VS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE--N--KTLT 802 (835)
Q Consensus 737 Las--gs-Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~--~--~~~~ 802 (835)
|+. .. ++ .|++||+.++ . ...+..+...+..+.++ ++..|+..+.+ +.+++|.+.. + +...
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~---~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 400 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVE---N-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKC 400 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCST---T-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEE
T ss_pred EEEEEEccCCceEEEEEECCCC---c-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCcee
Confidence 554 33 55 6777777665 2 34555556667788777 88888888776 6777887653 4 2333
Q ss_pred ec----cCCCCeeEEEEeCCCCEEEE-EECC--CcEEEeC
Q 003271 803 LS----AHDKLVSSLAASTVNGMVAS-ASHD--KCVKIWK 835 (835)
Q Consensus 803 l~----~h~~~V~~la~spdg~~LaS-gs~D--G~V~IWd 835 (835)
+. +|...+..+.|++++++|+. ++.+ ..+.+||
T Consensus 401 l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 401 VTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp SSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred ccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 33 26677889999999986664 3333 3466664
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=5.4e-18 Score=183.88 Aligned_cols=272 Identities=11% Similarity=0.075 Sum_probs=187.9
Q ss_pred ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEE-EEeCCCeE
Q 003271 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKA 579 (835)
Q Consensus 502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~La-sgs~Dg~I 579 (835)
+.....++++++.++.|.+|..... ..+..+..+. ..+.+++|+|||++++ ++..++.|
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 3455678889999999999943222 1222333222 2577899999998665 45578999
Q ss_pred EEEEcCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEECC------------CeEEEEecCCCCc--eeEEeecC
Q 003271 580 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGH 639 (835)
Q Consensus 580 ~VWd~~t~~~i~~l~~h~------~~V~sv~fspdg~~Latgs~D------------g~I~IWDl~t~~~--~~~~~~~h 639 (835)
.+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.+++. .+..+. +
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M 146 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence 999999999887775332 337899999999999998865 8999999987432 123333 3
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc---------------------------eEEEEecCC
Q 003271 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---------------------------TQMRFQPRL 692 (835)
Q Consensus 640 ~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i---------------------------~~l~fsp~~ 692 (835)
...+.+++|+|+++ +++ + ++.|++||+.+++.+..+.... ..+++++++
T Consensus 147 ~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 147 PRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred CCcccceeECCCCc-EEE-c--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 44688999999998 655 4 3349999999998877665321 223444332
Q ss_pred CEEEEEE-cCCcEEEEECCCCeEE-EEEcCCCCCeEEEEEcC-CCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCce
Q 003271 693 GRILAAA-IENYISILDVETQVCR-LKLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 769 (835)
Q Consensus 693 ~~ll~~s-~dg~I~IwDl~t~~~i-~~l~~h~~~I~sl~fsp-dg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V 769 (835)
....... ....+..+|..+++.. ..+..+...+.+++|+| ++++|+++ ++.|++||+.++ +.+..+.. ...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~ 297 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTY 297 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCC
T ss_pred cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCc
Confidence 1110000 0112223555554322 22233566789999999 99999988 899999999887 55555543 3457
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE
Q 003271 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 802 (835)
Q Consensus 770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 802 (835)
..++|+|++++|++++.++.|++||+.+++.+.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 789999999999998888999999999988773
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=8.7e-19 Score=193.87 Aligned_cols=270 Identities=12% Similarity=0.030 Sum_probs=187.8
Q ss_pred EEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 558 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
+.+++|+|||++|+.+..+ ..|.+||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.++.. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 6788999999998877543 4788999998876554443333334488999999999999999999999987653 33
Q ss_pred EeecCCCCeEE-------------------EEEcCCCCcEEEEE----eCCCcEEEEECCCCeeeeEee--cCceEEEEe
Q 003271 635 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFK--SGATQMRFQ 689 (835)
Q Consensus 635 ~~~~h~~~V~s-------------------l~fsp~g~~ll~sg----s~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fs 689 (835)
.+..+...... +.|+|+++.+++.. ..+..|++||+.+++...... ..+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34577776554432 456789999999887655543 347788999
Q ss_pred c-CCCEEEEEEcC------CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCC
Q 003271 690 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK 755 (835)
Q Consensus 690 p-~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h-~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~ 755 (835)
| ++..|+.++.+ ..|.+||+..++........ ...+..++|+|+|++|+.++ + +.|++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 77777776654 36889998766543322211 23578899999999877665 3 3499999987632
Q ss_pred cceEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEEcCCCcEEEeccCCC----------
Q 003271 756 GECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK---------- 808 (835)
Q Consensus 756 ~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs----------------~dg~I~IwDl~~~~~~~l~~h~~---------- 808 (835)
..+..+. ... +.|+| ++++|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 233 89999 999887765 23689999999887666665554
Q ss_pred -CeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 003271 809 -LVSSLAASTVNGMVASASH-DKCVKIW 834 (835)
Q Consensus 809 -~V~~la~spdg~~LaSgs~-DG~V~IW 834 (835)
.+..++|+|||+.|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2667899999998877764 5666665
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=6.5e-17 Score=178.97 Aligned_cols=244 Identities=12% Similarity=0.106 Sum_probs=173.8
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC-CCeEEEEeccC-CCCeEEEEECCCCCE--EEEEE-------------
Q 003271 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS------------- 616 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h-~~~V~sv~fspdg~~--Latgs------------- 616 (835)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999887 99999997 77765433211 123567899999994 45553
Q ss_pred CCCeEEEEecCCCCceeEEee----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeee--eEee-----cCce
Q 003271 617 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCA--GVFK-----SGAT 684 (835)
Q Consensus 617 ~Dg~I~IWDl~t~~~~~~~~~----~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~--~~~~-----~~i~ 684 (835)
.++.+.+|++.........+. .+...+.+++|+|+|+.++++...++.|++||+. +++.. ..+. ....
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974322222222 2556799999999998766555457899999998 67643 2232 2377
Q ss_pred EEEEecCCCEEEEEEc-CCcEEEEECC--CCeEEE---EEc-------CCCC------CeEEEE-EcCCCCEEEEEe--C
Q 003271 685 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCRL---KLQ-------GHKN------QVHSVC-WNTSGEYLASVS--D 742 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~-dg~I~IwDl~--t~~~i~---~l~-------~h~~------~I~sl~-fspdg~~Lasgs--D 742 (835)
.++|+|+++++++++. ++.|.+|++. +++... .+. +|.. .+.+++ |+|||++|+++. +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 8999999999988876 6889999765 455421 222 1122 488999 999999888765 3
Q ss_pred C-----eEEEEEcC-CCCCcceEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEEcCCCc
Q 003271 743 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 799 (835)
Q Consensus 743 g-----~I~IwDl~-t~~~~~~i~-~l~~~~~~V~sv~fsp---dg~~L~sgs~d-g~I~IwDl~~~~ 799 (835)
+ .|.+|++. ++. ...+. ....+...+..++|+| ++++|++++.+ +.|.||+++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 89999996 332 11111 2333455567889999 89999999875 799999987763
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=2.9e-18 Score=201.76 Aligned_cols=228 Identities=10% Similarity=0.061 Sum_probs=176.3
Q ss_pred CCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEeC---CCcEEEEECC
Q 003271 597 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN 671 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~sgs~---Dg~I~iwDl~ 671 (835)
..+|++++|+|||++||+++. ||+++||++.++. ...+..|. ..|.++.|+|+ .++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 9999999996543 44555555 68999999998 57777664 4445555443
Q ss_pred C---CeeeeEe-ecCceEEEEecCCCE-EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---
Q 003271 672 N---GSCAGVF-KSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D--- 742 (835)
Q Consensus 672 s---~~~~~~~-~~~i~~l~fsp~~~~-ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D--- 742 (835)
. +...... .......+|+|+++. +++...++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 2 2222111 123556789999865 4455566677799999987765554333 7899999999999777 5
Q ss_pred -CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEEEeccCCCCeeEEE-----
Q 003271 743 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA----- 814 (835)
Q Consensus 743 -g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l~~h~~~V~~la----- 814 (835)
..|++||+.++. ...+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 174 ~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3o4h_A 174 RVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAIT 249 (582)
T ss_dssp EEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEE
T ss_pred CeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcccc
Confidence 689999998873 235667788899999999999999888888 89999999998886667877787777
Q ss_pred ---EeCCCCEEEEEECCCcEEEeC
Q 003271 815 ---ASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 815 ---~spdg~~LaSgs~DG~V~IWd 835 (835)
|+|||.++++++.||.++||+
T Consensus 250 ~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 250 WLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEECTTSCEEEEEEETTEEEEEE
T ss_pred ceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=6.4e-18 Score=205.11 Aligned_cols=263 Identities=13% Similarity=0.077 Sum_probs=192.8
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-----eEEEEECCCCCEEEEEECC---------CeE
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 621 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-----V~sv~fspdg~~Latgs~D---------g~I 621 (835)
....++.|+|||++|+++ |+.|++||+.+++....+.+|... ..++.|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999998886 899999999999988888777643 2447899999999998876 566
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-------------------
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG------------------- 682 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~------------------- 682 (835)
.+||+.+++ ...+..|...+..++|+|||+.++++ .++.|++||+.+++.......+
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999876 34566778889999999999877654 3789999999887755432111
Q ss_pred --ceEEEEecCCCEEEEEEcCC------------------------------------cEEEEECCC---C---eEEEEE
Q 003271 683 --ATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---Q---VCRLKL 718 (835)
Q Consensus 683 --i~~l~fsp~~~~ll~~s~dg------------------------------------~I~IwDl~t---~---~~i~~l 718 (835)
...+.|+|||+.|+.++.|. .|++||+.+ + +.. .+
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l 249 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QI 249 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EE
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Ee
Confidence 13488999999999876432 488899988 7 333 33
Q ss_pred c------CCCCCeEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCC------cceEEEeecCCCceE-----EEEEeC
Q 003271 719 Q------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKFH-----SCVFHP 776 (835)
Q Consensus 719 ~------~h~~~I~sl~fspdg~~Lasgs--D---g~I~IwDl~t~~~------~~~i~~l~~~~~~V~-----sv~fsp 776 (835)
. +|...+..++|+|||++++... + ..|++||+.++.. ...+. -..+...+. .++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECT
T ss_pred cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcC
Confidence 3 3777899999999999776654 2 2799999988741 11111 133444433 688999
Q ss_pred CCCEEE-EEEc-CC--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271 777 TFPSLL-VIGC-YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 777 dg~~L~-sgs~-dg--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~ 827 (835)
||+.|+ ..+. +| .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 999877 6654 33 799999999888877766667776653 44665554443
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=1.6e-17 Score=189.16 Aligned_cols=210 Identities=14% Similarity=0.157 Sum_probs=159.3
Q ss_pred CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC---------cee-----EEeecCCCC
Q 003271 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSL-----RTFTGHSTT 642 (835)
Q Consensus 577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~---------~~~-----~~~~~h~~~ 642 (835)
+.|++|+.... .+...+..+++++++.+|++++.|+ |+||+..... ..+ .....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 56888865321 2345688999999999999999998 8998753210 001 112235678
Q ss_pred eEEEEEcCCCCcEEE---EEeCCCcEEEEECCCC--------ee---eeEe---ecCceEEEEecC-CCEEEEEEcCCcE
Q 003271 643 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SC---AGVF---KSGATQMRFQPR-LGRILAAAIENYI 704 (835)
Q Consensus 643 V~sl~fsp~g~~ll~---sgs~Dg~I~iwDl~s~--------~~---~~~~---~~~i~~l~fsp~-~~~ll~~s~dg~I 704 (835)
|.+++|+|+++.+++ +++.|+.|++||+.+. +. +..+ ...+.+++|+|+ +..|++++.|+.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999886655 7888999999998654 22 2222 356999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-------CCceEEEEEeC
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 776 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-------~~~V~sv~fsp 776 (835)
++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ + .....+..+ ...|.++.|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778999999999999999999999 9999999998 3 233333332 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEEcCCC
Q 003271 777 TFPSLLVIG-CYE------TLELWNMTEN 798 (835)
Q Consensus 777 dg~~L~sgs-~dg------~I~IwDl~~~ 798 (835)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 888776544 332 4999999765
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1.8e-16 Score=192.28 Aligned_cols=293 Identities=14% Similarity=0.093 Sum_probs=196.2
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCC-----EEEEEEeCCCCEEEEEeCC-----
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD----- 576 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~-----V~sl~fSpdg~~Lasgs~D----- 576 (835)
.+++++ |+.|.+|....+. +...+.+|... ...++|||||++|++++.+
T Consensus 29 ~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 29 EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 577775 8899999543331 12334455432 3458899999999998876
Q ss_pred ----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe---------
Q 003271 577 ----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------- 643 (835)
Q Consensus 577 ----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V--------- 643 (835)
+.+.+||+.+++.. .+..|...+..++|+|||+.||.+. |+.|++||+.++.....+..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56679999998865 4667888999999999999999885 68999999987764322233333323
Q ss_pred --------EEEEEcCCCCcEEEEEeCCC-----------------------------------cEEEEECCC---C---e
Q 003271 644 --------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---G---S 674 (835)
Q Consensus 644 --------~sl~fsp~g~~ll~sgs~Dg-----------------------------------~I~iwDl~s---~---~ 674 (835)
..+.|+|||+.+++....++ .|++||+.+ + +
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999997766543222 588899988 7 3
Q ss_pred eeeEee--------cCceEEEEecCCCEEEEEEcC----CcEEEEECCCCe----EEE--EE--cCCCCCeE-----EEE
Q 003271 675 CAGVFK--------SGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVC 729 (835)
Q Consensus 675 ~~~~~~--------~~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~----~i~--~l--~~h~~~I~-----sl~ 729 (835)
...... ..+..++|+|++..++..... ..|.+||+.+++ +.. .+ ..|...|. .+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 322211 126788999998866665443 369999998876 221 11 34555554 789
Q ss_pred EcCCCCEEE-EEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEEcCC
Q 003271 730 WNTSGEYLA-SVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTE 797 (835)
Q Consensus 730 fspdg~~La-sgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-------g~I~IwDl~~ 797 (835)
|+|||+.|+ ..+ +| .|++||+.++ .+ ..+......+..+.. ++++.|+..+.. ..|+..++.+
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~---~~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKK---DC-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCS---SC-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCC---ce-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999999877 665 44 7888998765 22 234444555655543 446667666654 2566666666
Q ss_pred CcEE-Eecc----CCCCeeEEEEeCCCCEEEEEEC
Q 003271 798 NKTL-TLSA----HDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 798 ~~~~-~l~~----h~~~V~~la~spdg~~LaSgs~ 827 (835)
+... .+.. ....+..+.|+|++++++....
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 5543 3331 2467889999999997765543
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=2.1e-16 Score=175.18 Aligned_cols=262 Identities=8% Similarity=0.045 Sum_probs=189.0
Q ss_pred CCCEEEEEe------CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC----------CCeEEEEecCCC
Q 003271 566 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 629 (835)
Q Consensus 566 dg~~Lasgs------~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~ 629 (835)
+++++++.. .|+.|.+||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 555655543 3789999999999999888776655 8999999999999873 678999999876
Q ss_pred CceeEEeec------CCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-eecC-ceEEEEecCC-CEEEEEE
Q 003271 630 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKSG-ATQMRFQPRL-GRILAAA 699 (835)
Q Consensus 630 ~~~~~~~~~------h~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~-~~~~-i~~l~fsp~~-~~ll~~s 699 (835)
+. +..+.. +......++|+|+|++++++... ++.|.+||+.+++.+.. +..+ ...+.+.|++ ..+++.+
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence 64 444432 23456789999999977766654 68999999999988877 6543 2335677765 5778888
Q ss_pred cCCcEEEEECCC-CeEEEEE------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-----
Q 003271 700 IENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG----- 766 (835)
Q Consensus 700 ~dg~I~IwDl~t-~~~i~~l------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~----- 766 (835)
.||.+.+|++.. ++..... ..+..++ .+.+++++..++..+ ++.|.++|+..... ..+..+....
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKA 248 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccc
Confidence 999999999865 5544221 1122222 334457777777667 88999999976421 2222221100
Q ss_pred -----CceEEEEEeCCCCEEEEEEc-----------CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271 767 -----NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 767 -----~~V~sv~fspdg~~L~sgs~-----------dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG 829 (835)
.....++|+|++..++++.. .+.|.+||+.+++.+ .+..+. +.+|+|+|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 11123689999998888764 348999999999988 455555 999999999999998887 9
Q ss_pred cEEEeC
Q 003271 830 CVKIWK 835 (835)
Q Consensus 830 ~V~IWd 835 (835)
.|.|||
T Consensus 326 ~v~v~D 331 (361)
T 2oiz_A 326 NVNVYD 331 (361)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 999996
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.75 E-value=8.7e-17 Score=191.74 Aligned_cols=279 Identities=10% Similarity=0.050 Sum_probs=195.2
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEE--eCCCeEEEEEcCCCeEEEEeccCCCCeE---------EEEEC--CCCCE-EEEE
Q 003271 550 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 615 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasg--s~Dg~I~VWd~~t~~~i~~l~~h~~~V~---------sv~fs--pdg~~-Latg 615 (835)
.+.+|...|.+++|++++-++++. +.++...||....+.....+..|...+. .+.|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 355788899999999887666766 5588999998655555667777776666 66665 99998 7766
Q ss_pred EC-CCeEEEEecC--C-CCceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEECCC-----
Q 003271 616 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN----- 672 (835)
Q Consensus 616 s~-Dg~I~IWDl~--t-~~~~~~~~~~-----h~~~V~sl~fsp~g~~ll~sgs~D---------g~I~iwDl~s----- 672 (835)
+. +..|.+|++. . +. ...+.. |...+.+++|+|+|+.++++.... ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 54 5567777765 2 33 344544 667789999999998666554321 5899999988
Q ss_pred -CeeeeEe-e--cCceEEEEecCCCEEEEEEcCC--------cEEEEECC-CC---eEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 673 -GSCAGVF-K--SGATQMRFQPRLGRILAAAIEN--------YISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 673 -~~~~~~~-~--~~i~~l~fsp~~~~ll~~s~dg--------~I~IwDl~-t~---~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
++..... . ..+..++|+|+|++|++++.++ .|++||+. ++ +......+|...+..+.|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5544333 2 2366788999999999888653 79999999 56 444444556788999999999997
Q ss_pred EEEEe-CC--eEEEEEcCCCCCcceEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--EcCCCcEEEe
Q 003271 737 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 803 (835)
Q Consensus 737 Lasgs-Dg--~I~IwDl~t~~~~~~i~~l~~~~~~--------V~sv~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l 803 (835)
++++. ++ .|++||+.++ ........+... +..++|+|++.+++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 77776 77 6666666554 222222222111 467899999999988888 888888 7777777777
Q ss_pred ccCCCCeeEE-EEeCCCCEEEEEECCCcEEEe
Q 003271 804 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 804 ~~h~~~V~~l-a~spdg~~LaSgs~DG~V~IW 834 (835)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7888888877 554433344555666555554
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=2.4e-16 Score=174.80 Aligned_cols=260 Identities=10% Similarity=0.100 Sum_probs=191.9
Q ss_pred EecCCCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEEcCCCeEEEEeccC------CCCeEEEEECCCCCEEE
Q 003271 550 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA 613 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~i~~l~~h------~~~V~sv~fspdg~~La 613 (835)
.+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+.++... ......++|+|||++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44455444 8999999999998863 678999999999988877542 34567899999999999
Q ss_pred EEEC--CCeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEe------ec--
Q 003271 614 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF------KS-- 681 (835)
Q Consensus 614 tgs~--Dg~I~IWDl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~------~~-- 681 (835)
++.. ++.|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++..... ..
T Consensus 124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 9874 58999999998754 444 33 22 2234667888767778888999999999865 5544211 11
Q ss_pred CceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEcC------CC----CCeEEEEEcCCCCEEEEEe--------
Q 003271 682 GATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCWNTSGEYLASVS-------- 741 (835)
Q Consensus 682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~------h~----~~I~sl~fspdg~~Lasgs-------- 741 (835)
....+.+.+++..++..+.++.|+++|+.... .+..+.. +. .....++|++++..++++.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 11223346777788888888999999997543 2222211 01 1112378999988777653
Q ss_pred ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC--cEEEe-ccCCCCeeEEE
Q 003271 742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSLA 814 (835)
Q Consensus 742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~--~~~~l-~~h~~~V~~la 814 (835)
.+.|.+||+.+. +.+.++..+. +..++|+|++++|++++. +.|.+||..++ +++.. ..+......++
T Consensus 281 ~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp TTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 238999999988 7888887766 999999999999998887 99999999999 88854 57888899999
Q ss_pred EeCCCC
Q 003271 815 ASTVNG 820 (835)
Q Consensus 815 ~spdg~ 820 (835)
++|+|+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999985
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=8.3e-16 Score=167.44 Aligned_cols=251 Identities=11% Similarity=0.096 Sum_probs=176.7
Q ss_pred CEEEEEEeCCCCEEEEEe---------CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---C--eEE
Q 003271 557 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 622 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs---------~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g--~I~ 622 (835)
.|..++| ||++|+... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4667777 888877642 25689999999887543 3 568899999999999888754 3 477
Q ss_pred EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC--------------------------CCcEEEEECCCCeee
Q 003271 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 676 (835)
Q Consensus 623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~--------------------------Dg~I~iwDl~s~~~~ 676 (835)
+||+.+++. .. +..+.. +.++.|+|+++.+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~g~~-~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSS-KK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEE-EE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCce-EE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 788876542 33 333334 9999999999877766532 357999999988763
Q ss_pred eEee-cCceEEEEecCCCEEEEEEcCC---------cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---
Q 003271 677 GVFK-SGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D--- 742 (835)
Q Consensus 677 ~~~~-~~i~~l~fsp~~~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D--- 742 (835)
..+. ..+..+.|+|++ .++++..+. .|+++| +++... +..+ ..+.++ +|+|++|+.++ +
T Consensus 166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK-MFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE-EEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE-eccC-cceeeE--CCCCCEEEEEEccccC
Confidence 3222 278889999998 666665432 355555 555433 3334 455544 89999887776 3
Q ss_pred -----CeEEEEEcCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271 743 -----ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 816 (835)
Q Consensus 743 -----g~I~IwDl~t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~s 816 (835)
..|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred CccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence 2677777 33 333333344567776 8999 88 88888999999999 8777777666778889999999
Q ss_pred CCCCEEEEEECCCcE-EEe
Q 003271 817 TVNGMVASASHDKCV-KIW 834 (835)
Q Consensus 817 pdg~~LaSgs~DG~V-~IW 834 (835)
+ .++++++.++.. .||
T Consensus 311 ~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 311 E--IVVYLKETATRLRELF 327 (347)
T ss_dssp S--SEEEEEECSSSCCEEE
T ss_pred C--cEEEEEcCCCChHHhe
Confidence 9 677787777654 555
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.1e-15 Score=166.67 Aligned_cols=238 Identities=15% Similarity=0.116 Sum_probs=181.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCC------------------------CeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCC
Q 003271 555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 609 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~D------------------------g~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg 609 (835)
-+.|.+++++++|+++++...+ +.|.+||..+++.+..+. ++-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4569999999999999888777 479999999998887664 445678999999999
Q ss_pred CEEEEEECCCeEEEEecCCCCceeEEe---------ecCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEe
Q 003271 610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 679 (835)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~---------~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~ 679 (835)
+++++...++.|++||.......+..+ ..+......|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 234457899999994455777775 689999999 456666655
Q ss_pred e-------------cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEE---
Q 003271 680 K-------------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV--- 740 (835)
Q Consensus 680 ~-------------~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~Lasg--- 740 (835)
. .....++++|+++.++++. .++.|++||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 3 1267899999966665555 56899999999888888774 4567889999999 4333332
Q ss_pred ----e-CCeEEEEEcCCCCCcceEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 741 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 741 ----s-Dg~I~IwDl~t~~~~~~i~~l---~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
. +..|++||+.++ ..+..+ ..+...+..++++|+|..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 566665 35667799999999996666666678999999754
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=9.9e-16 Score=166.16 Aligned_cols=266 Identities=8% Similarity=0.033 Sum_probs=189.9
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347788999988887777888999999 4556667777778889999999999888888899999999987663 333
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEc------
Q 003271 636 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAI------ 700 (835)
Q Consensus 636 ~~~h~~~V~sl~fsp~g~~ll~sgs~D----g~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~------ 700 (835)
...+...+.+++|++++. ++++...+ +.|.+||..++.....+. ..+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999986 55565555 689999998876543332 23778999999876665443
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC-CCCcceE-----EEeecCCCceEEE
Q 003271 701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 772 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t-~~~~~~i-----~~l~~~~~~V~sv 772 (835)
.+.|..||..+++..... .+...+.+++|++++++|+.+. ++.|.+||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 256777777665544322 2334578999999998665554 78999999964 2211111 11111 2467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCC------CeeEEEEeCCCCEEEEEECC
Q 003271 773 VFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD 828 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~------~V~~la~spdg~~LaSgs~D 828 (835)
++++++..+++...++.|.+||........+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999977777778899999985433334433332 68999999998777655554
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=4.9e-16 Score=171.84 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=167.7
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEE--ECCCCCEEEEEE----------
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATSS---------- 616 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~--fspdg~~Latgs---------- 616 (835)
....+|...+.+++|+|||+.|++++.++.|++||+.+++....+..+...+.... +++++++++...
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 33445665666788999999999999999999999999988777766666665444 489999887532
Q ss_pred ------------CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC-CCCcEEEEEeC-----CCcEEEEECCCCeeeeE
Q 003271 617 ------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGV 678 (835)
Q Consensus 617 ------------~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp-~g~~ll~sgs~-----Dg~I~iwDl~s~~~~~~ 678 (835)
.+..|++||+.+++ ...+..+...+..+.|+| +++.++++... ...|+++|+..+.....
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred ccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 44789999999875 455556677899999999 88766655542 34788899876554333
Q ss_pred eec----CceEEEEecCCCEEEEEEcC-C----cEEEEECCCCeEEE--EEcCCCCC---eEEEEEcCCCCEEEEE----
Q 003271 679 FKS----GATQMRFQPRLGRILAAAIE-N----YISILDVETQVCRL--KLQGHKNQ---VHSVCWNTSGEYLASV---- 740 (835)
Q Consensus 679 ~~~----~i~~l~fsp~~~~ll~~s~d-g----~I~IwDl~t~~~i~--~l~~h~~~---I~sl~fspdg~~Lasg---- 740 (835)
... .+..++|+|+++.|+..+.+ + .|++||+.+++... .+.++... ...++|+|||+.|+..
T Consensus 232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 222 25577899999988665542 2 39999999886433 33321000 1123689999887753
Q ss_pred -----e-CCeEEEEEcCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CCe--EEEEEcCC
Q 003271 741 -----S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YET--LELWNMTE 797 (835)
Q Consensus 741 -----s-Dg~I~IwDl~t~~~~~~i~~l~~~~~-----------~V~sv~fspdg~~L~sgs~-dg~--I~IwDl~~ 797 (835)
. +..|++||+.++ . +..+..+.. .+..++|+|+|+.|++++. ++. |+++++.+
T Consensus 312 ~~~~~~~~~~i~~~d~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNG---T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp -----CCCCEEEEEETTTT---E-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccccCCCCEEEEEeccCC---c-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2 558999999886 2 334444444 5788899999998888775 454 44445543
No 174
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=1.7e-14 Score=169.18 Aligned_cols=306 Identities=10% Similarity=0.017 Sum_probs=219.6
Q ss_pred cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC-
Q 003271 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (835)
Q Consensus 507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~- 585 (835)
.++++...++.|.+++.... ..+..+... ..+.++.|+|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCC-------------------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 46666677788888833222 122233322 246789999999999999999999999996
Q ss_pred -CCeEEEEeccCCCCeEEEEEC----CCCCEEEEEEC-CCeEEEEecCCCCceeEEeec----------CCC-CeEEEEE
Q 003271 586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HST-TVMSLDF 648 (835)
Q Consensus 586 -t~~~i~~l~~h~~~V~sv~fs----pdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~----------h~~-~V~sl~f 648 (835)
+++.+..+.... ....++|+ |||++++++++ ++.|.|+|..+.+. +..+.. |.. .+..+.+
T Consensus 228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence 888888886544 46789999 69999888766 58999999888664 433321 222 6788999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeee--Eee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcC---
Q 003271 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG--- 720 (835)
Q Consensus 649 sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~--- 720 (835)
++++..+++....+|.|.++|....+... .+. .....+.|+|+++++++++. ++.|.++|+.+++.+..+.-
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 99888888888888999999998754332 222 23567889999999988875 68999999999988776643
Q ss_pred --CCCCeEEEEEcCCC-CEEEEEe--CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEEEEc-----
Q 003271 721 --HKNQVHSVCWNTSG-EYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC----- 786 (835)
Q Consensus 721 --h~~~I~sl~fspdg-~~Lasgs--Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~----- 786 (835)
|.+.-..+ ++|++ .+++++. ++.|.++|..+... .+.+.++......-..+.++|++++|++...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 33222222 57874 4445554 68999999987321 3567777765555456789999999999773
Q ss_pred --CCeEEEEEcCCC-----c-E-EEec--------cCCCCeeEEEEeCCCCEEEEEEC-----CCcEEEeC
Q 003271 787 --YETLELWNMTEN-----K-T-LTLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 835 (835)
Q Consensus 787 --dg~I~IwDl~~~-----~-~-~~l~--------~h~~~V~~la~spdg~~LaSgs~-----DG~V~IWd 835 (835)
.+.|.|||+.+. . . ..+. .....+..+.|+++|+.+..+.. ++.|.|+|
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 359999999876 2 1 1221 12457899999999997766543 68888875
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1e-14 Score=154.78 Aligned_cols=235 Identities=10% Similarity=0.143 Sum_probs=174.1
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec------cCCCCeEEEEE-CCCCCEEEEEEC-CCeEEEE
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 624 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~------~h~~~V~sv~f-spdg~~Latgs~-Dg~I~IW 624 (835)
+|-..+.+++++++++++++...++.|.+||.+ ++.+..+. +|...+.++++ .+++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 556679999999999988888889999999987 56666653 24467899999 467766666543 8899999
Q ss_pred ecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEE
Q 003271 625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAA 698 (835)
Q Consensus 625 Dl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~ 698 (835)
|. ++.. +..+. .+...+.++++++++. ++++...++.|++||.. ++.+..+. .....+++++++..+++.
T Consensus 106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 94 4443 44443 3446789999999986 77777778999999965 55555553 236789999997755555
Q ss_pred EcCCcEEEEECCCCeEEEEEcCC--CCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecCC--CceEEE
Q 003271 699 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC 772 (835)
Q Consensus 699 s~dg~I~IwDl~t~~~i~~l~~h--~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv 772 (835)
..++.|++||.. ++.+..+..+ ...+.+++++++|+++++.. ++ .|.+||.. + ..+..+..+. ..+..+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence 568999999985 4555566433 36789999999999888887 65 99999954 3 3455554433 347899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271 773 VFHPTFPSLLVIGCYETLELWNMTEN 798 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg~I~IwDl~~~ 798 (835)
+++|++..+++ +.++.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999975444 77899999998653
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.70 E-value=1.1e-14 Score=154.43 Aligned_cols=231 Identities=13% Similarity=0.126 Sum_probs=171.0
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee------cCCCCeEEEEEc-CCCCcEEEEEeC-CCcEE
Q 003271 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFH-PSKEDLLCSCDN-NSEIR 666 (835)
Q Consensus 595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~------~h~~~V~sl~fs-p~g~~ll~sgs~-Dg~I~ 666 (835)
++-..+.++++++++.++++...++.|.+||.. +.. +..+. ++...+.+++++ +++ .++++... ++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF-KFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE-EEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcE-EEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 332 44442 234578999995 554 46656543 88999
Q ss_pred EEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEE
Q 003271 667 YWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 667 iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~Lasg 740 (835)
+|| .+++.+..+. .....+++++++..+++...++.|.+||.. ++.+..+. .+...+.+++++++|+++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 5566666654 236789999998866665667899999965 45555553 345678999999999987777
Q ss_pred e-CCeEEEEEcCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEEEeccCC--CCeeEEE
Q 003271 741 S-DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLA 814 (835)
Q Consensus 741 s-Dg~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~l~~h~--~~V~~la 814 (835)
. ++.|++||... ..+..+... ...+..+++++++..+++...++ .|.+||........+..+. ..+.+++
T Consensus 182 ~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~ 257 (286)
T 1q7f_A 182 NRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA 257 (286)
T ss_dssp GGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE
T ss_pred CCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEE
Confidence 6 88999999743 345555433 36789999999998777776675 9999996544333444333 3478999
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 003271 815 ASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 815 ~spdg~~LaSgs~DG~V~IWd 835 (835)
++++|+++++ +.|++|+||+
T Consensus 258 ~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 258 LMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EETTTEEEEE-ETTTEEEEEE
T ss_pred ECCCCcEEEE-CCCCeEEEEE
Confidence 9999987777 6799999995
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=4.5e-15 Score=161.85 Aligned_cols=232 Identities=10% Similarity=0.076 Sum_probs=173.3
Q ss_pred CCCeEEEEECCCCCEEEEEECC------------------------CeEEEEecCCCCceeEEee-cCCCCeEEEEEcCC
Q 003271 597 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 651 (835)
Q Consensus 597 ~~~V~sv~fspdg~~Latgs~D------------------------g~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~ 651 (835)
-+.|.+|+++++|+++++...+ +.|.+||..+++. +..+. ++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 3568999999999999888777 4799999988775 33333 44567899999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCe-eeeEee------------cCceEEEEec-CCCEEEEEE-cCCcEEEEECCCCeEEE
Q 003271 652 KEDLLCSCDNNSEIRYWSINNGS-CAGVFK------------SGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 716 (835)
Q Consensus 652 g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~------------~~i~~l~fsp-~~~~ll~~s-~dg~I~IwDl~t~~~i~ 716 (835)
++ ++++...++.|++||..... .+..+. .....++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 77788888999999986542 344442 1367899999 555555554 489999999 5566666
Q ss_pred EEcCC----------CCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEee--cCCCceEEEEEeCCCCEEE
Q 003271 717 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 717 ~l~~h----------~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~~~~~V~sv~fspdg~~L~ 782 (835)
.+... -.....|+++++ +.++++.. ++.|++||..++ +.+..+. .+...+..++|+| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234889999998 66666555 889999999866 5566653 4556788999999 32222
Q ss_pred EE-------EcCCeEEEEEcCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 783 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 783 sg-------s~dg~I~IwDl~~~~~~~l----~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
+. ..+..|++||+.+++.+.. ..+...+.+|+++++|.++++...+++|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999998855 36777899999999998888888999999985
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=1.8e-13 Score=144.85 Aligned_cols=272 Identities=8% Similarity=-0.029 Sum_probs=193.6
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
+..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++++++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999988777668899999988 55443 223355779999999999888887778899999986 3
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-e---cCceEEEEecCCCEEEEEEcCCcEE
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K---SGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~---~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.............+.++++++++. ++++...++.|.+||. +++..... . ..+..+++++++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 321222223456789999999875 6666666889999999 55443322 1 2367889999886666555578999
Q ss_pred EEECCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 706 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 706 IwDl~t~~~i~~-l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
+||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++. ............+..+++++++..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--ITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--EEEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6655432 333456788999999999777665 789999998 542 111223334567899999999985444
Q ss_pred EEcCCeEEEEEcCCCcEEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 784 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 784 gs~dg~I~IwDl~~~~~~~l--~~h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
...++.|.+||. ++....+ ..+...+.++++ +++.++++...++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4554433 345678999999 8888777665444433
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=5.2e-14 Score=152.55 Aligned_cols=243 Identities=13% Similarity=0.122 Sum_probs=174.9
Q ss_pred EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC----CeEE
Q 003271 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVR 622 (835)
Q Consensus 547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D----g~I~ 622 (835)
.+..+..+...+.+++|+++|++++++..++.|.+||.++++....+..+...+.+++|+++++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 344566777788999999999988888889999999999887766554567789999999999888877666 6899
Q ss_pred EEecCCCCceeEEee--cCCCCeEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEee--cCceEEEEecCC
Q 003271 623 VWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFK--SGATQMRFQPRL 692 (835)
Q Consensus 623 IWDl~t~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~ 692 (835)
+||..++... ..+. .+...+.+++++|++. ++++... .+.|+.||..+++...... .....++|+|++
T Consensus 116 ~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 116 AATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp EECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred EEeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence 9999876542 2222 2446789999999986 5545442 3567777776555433222 346789999999
Q ss_pred CEEEEEE-cCCcEEEEECCC-CeEEE--------EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271 693 GRILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 693 ~~ll~~s-~dg~I~IwDl~t-~~~i~--------~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~ 761 (835)
+.++++. .++.|.+||+.+ +..+. .+.++ ..+..++++++|+++++.. ++.|.+||.. + ..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~ 268 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ 268 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence 8776665 468999999963 22111 11222 4678899999999888776 7899999984 3 34555
Q ss_pred eecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEEcC
Q 003271 762 LSCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 796 (835)
Q Consensus 762 l~~~~~------~V~sv~fspdg~~L~sgs~dg------~I~IwDl~ 796 (835)
+..+.. .+.+++|+|++..|++++.++ .|+.+++.
T Consensus 269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 544332 688999999988888777764 45555543
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=1.5e-15 Score=181.00 Aligned_cols=237 Identities=10% Similarity=0.068 Sum_probs=163.2
Q ss_pred EEEEe--CCCCE-EEEEeC-CCeEEEEEcC--C-CeEEEEecc-----CCCCeEEEEECCCCCEEEEEECC---------
Q 003271 560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--S-FTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------- 618 (835)
Q Consensus 560 sl~fS--pdg~~-Lasgs~-Dg~I~VWd~~--t-~~~i~~l~~-----h~~~V~sv~fspdg~~Latgs~D--------- 618 (835)
++.|+ |||++ |+.++. +..|++|++. . ++ ...+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 55565 99998 776654 5667777765 2 33 445555 67788999999999999998877
Q ss_pred -CeEEEEecCC------CCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEEECC-CC---eeeeEe
Q 003271 619 -RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVF 679 (835)
Q Consensus 619 -g~I~IWDl~t------~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~D-------g~I~iwDl~-s~---~~~~~~ 679 (835)
..|++||+.+ +. ...+. .+...+..++|+|||+.+++++... ..|++||+. ++ +.....
T Consensus 160 ~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 5899999987 33 34555 5667788899999998776555432 479999999 56 443333
Q ss_pred e---cCceEEEEecCCCEEEEEEcCC--cEEEEECCCCeEEEEEcCCCCC--------eEEEEEcCCCCEEEEEeCCeEE
Q 003271 680 K---SGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVR 746 (835)
Q Consensus 680 ~---~~i~~l~fsp~~~~ll~~s~dg--~I~IwDl~t~~~i~~l~~h~~~--------I~sl~fspdg~~LasgsDg~I~ 746 (835)
. ..+..+.|+|++..++++..++ .|++||+.+++.......+... +.+++|++++.+++++.++.++
T Consensus 238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (662)
T 3azo_A 238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAV 317 (662)
T ss_dssp EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCE
T ss_pred CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccE
Confidence 3 3477899999999666666677 6777787777655443333222 5678999999988887767777
Q ss_pred EE--EcCCCCCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcCC--eEEEEEcCCCcEEEe
Q 003271 747 VW--SIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 803 (835)
Q Consensus 747 Iw--Dl~t~~~~~~i~~l~~~~~~V~sv-~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l 803 (835)
|| |+.++ .+..+..+...+..+ +++.+.-.+++++.+. .|++||+.+++...+
T Consensus 318 l~~~d~~~~----~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 318 LGILDPESG----ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEETTTT----EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEEECCCC----cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 88 54443 356677777777766 4443332233334343 677778888876654
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=1.3e-14 Score=175.03 Aligned_cols=243 Identities=8% Similarity=-0.012 Sum_probs=175.4
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe-------
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 620 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg-----~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~------- 620 (835)
+|...+.+++|||||++||.+..++ .|++||+.+++.+.....+ ..+.+++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445688999999999998876543 8999999999887643222 23678999999999999988776
Q ss_pred ---------EEEEecCCCCce-eEEee--cCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEECCC------Ce-eee
Q 003271 621 ---------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG 677 (835)
Q Consensus 621 ---------I~IWDl~t~~~~-~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~----Dg~I~iwDl~s------~~-~~~ 677 (835)
|++|++.++... ...+. .|...+..+.|+|+|+.++++... +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999876532 22222 245568899999999987766642 57899999976 42 233
Q ss_pred EeecC--ceEEEEecCCCEEEEEEcC----CcEEEEECCCCe--EEEEEcCCCC--CeEEEEEcCCCCEEEEEe-CC--e
Q 003271 678 VFKSG--ATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L 744 (835)
Q Consensus 678 ~~~~~--i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~--~i~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg--~ 744 (835)
.+..+ .....|+++++.|++.+.. ..|.+||+.++. ....+..|.. .+..++|++++.++++.. ++ .
T Consensus 281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT 360 (710)
T ss_dssp EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence 33321 2233588999998887764 359999998764 1233334433 688899987777777777 77 5
Q ss_pred EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCc
Q 003271 745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 799 (835)
Q Consensus 745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~ 799 (835)
|++||+.++ ..+..+..+...+..+.++|++..|++...+ +.|++||+.+++
T Consensus 361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 667777665 4566677677788899999999877655433 589999998877
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=2.4e-14 Score=155.78 Aligned_cols=232 Identities=18% Similarity=0.207 Sum_probs=163.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCC---C--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC------------
Q 003271 556 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 618 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~D---g--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D------------ 618 (835)
..+.+++|||||++||.++.+ + .|.+|++.+++.......+ . +.+++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999887754 3 4888899888776555433 3 9999999999998888642
Q ss_pred ---------------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC---------cEEEEECCCCe
Q 003271 619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---------EIRYWSINNGS 674 (835)
Q Consensus 619 ---------------g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg---------~I~iwDl~s~~ 674 (835)
..|++||+.++.. +..+.. . .+..+.|+|++ +++++..+. .|+++| +++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~ 209 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK 209 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence 5799999987653 233443 3 78899999998 666665432 455555 555
Q ss_pred eeeEeecCceEEEEecCCCEEEEEEcC--------CcEEEEECCCCeEEEEEcCCCCCeEE-EEEcCCCCEEEEEe-CCe
Q 003271 675 CAGVFKSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DEL 744 (835)
Q Consensus 675 ~~~~~~~~i~~l~fsp~~~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h~~~I~s-l~fspdg~~Lasgs-Dg~ 744 (835)
....... .....++|+++.|++++.+ ..|++|| +++.......+...+.. +.|+ ++ ++++++ ++.
T Consensus 210 ~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~ 284 (347)
T 2gop_A 210 EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS 284 (347)
T ss_dssp EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence 4433333 3334459999998887754 3688888 56655555556778886 9999 88 777777 889
Q ss_pred EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEEcCCCcEEEeccCCCC
Q 003271 745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL 809 (835)
Q Consensus 745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I-~IwDl~~~~~~~l~~h~~~ 809 (835)
++|| +.++ .. ..+..+...|.+++|+| ..+++++.++.. .||.+. ++...+..|...
T Consensus 285 ~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 285 VNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp EEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred EEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 9999 8743 33 33344577899999999 677777777654 677666 666666666554
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.66 E-value=4.2e-14 Score=151.05 Aligned_cols=241 Identities=10% Similarity=0.064 Sum_probs=176.9
Q ss_pred EEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34456677789999999998 7888888999999999887 55666677889999999999988777777899999997
Q ss_pred CCCceeEEeec----CCCCeEEEEEcCCCCcEEEE----Ee-------------CCCcEEEEECCCCeeeeEee--cCce
Q 003271 628 NPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFK--SGAT 684 (835)
Q Consensus 628 t~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s----gs-------------~Dg~I~iwDl~s~~~~~~~~--~~i~ 684 (835)
++... ..... ....+.+++++|+|. ++++ +. ..+.|..++.. ++...... ....
T Consensus 99 ~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 GGEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp TCCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred CCcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 76632 22111 123467899999986 5555 22 13467777765 44333222 2357
Q ss_pred EEEEecCCCEEEEEEcCCcEEEEECC-CCeE---EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEE
Q 003271 685 QMRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 760 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~---i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~ 760 (835)
.++|+|+++.+++.+.++.|++||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + ..+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 89999999988555567899999997 4544 23333355667789999999987777 8899999986 3 5666
Q ss_pred EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 761 ELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 761 ~l~~~~~~V~sv~f-spdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.+..+.. +.+++| .|+++.|++++.+ .|..++..+.++.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6666666 899999 5899989998875 5666677666543
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=6.9e-14 Score=152.63 Aligned_cols=249 Identities=10% Similarity=0.006 Sum_probs=186.3
Q ss_pred CCCeEEEEEcCCCeEEEEec------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEE
Q 003271 575 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (835)
Q Consensus 575 ~Dg~I~VWd~~t~~~i~~l~------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~f 648 (835)
.++.|.+||.++++....+. .......++.+. +++++++...++.|.+||..+++. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998876542 122456778874 345555666679999999998774 45454 3467889999
Q ss_pred cCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------CceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEE
Q 003271 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKL 718 (835)
Q Consensus 649 sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l 718 (835)
++++ .++++...++.|.+||+.+++....+.. ....+++ +++.++++.. ++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 5666665799999999999988776652 3456677 5677777763 789999999999888877
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEe-C----------CeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003271 719 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 786 (835)
Q Consensus 719 ~~h~~~I~sl~fspdg~~Lasgs-D----------g~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~ 786 (835)
.. ......++++++|++++++. + +.|.+||..++ +....+... ......++|+|++++|+++..
T Consensus 169 ~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 64 33457889999999777766 4 68999999887 555455432 347899999999999988765
Q ss_pred CCeEEEEEcCCCcEEE--e-ccCCCCeeEEEEeC-CCCEEEEE----ECCCcEEEeC
Q 003271 787 YETLELWNMTENKTLT--L-SAHDKLVSSLAAST-VNGMVASA----SHDKCVKIWK 835 (835)
Q Consensus 787 dg~I~IwDl~~~~~~~--l-~~h~~~V~~la~sp-dg~~LaSg----s~DG~V~IWd 835 (835)
.|++||..+++... + ..+.....+++++| ++.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 1 12246789999999 55566665 5688999986
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=4.3e-13 Score=157.32 Aligned_cols=263 Identities=11% Similarity=0.062 Sum_probs=193.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC--CCCceeEEeecCCCC
Q 003271 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 642 (835)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~--t~~~~~~~~~~h~~~ 642 (835)
+.+.++++...++.|.+||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~-G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKI-GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEEC-CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEec-CCC
Confidence 34456777778999999999999999888643 357799999999999999999999999995 5543 444443 334
Q ss_pred eEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------------CceEEEEecCCCEEEEEEc-CCc
Q 003271 643 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------------GATQMRFQPRLGRILAAAI-ENY 703 (835)
Q Consensus 643 V~sl~fs----p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------------~i~~l~fsp~~~~ll~~s~-dg~ 703 (835)
...++|+ |+|+++++++..++.|.++|..+.+.+..+.. .+..+.+++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 69999998888899999999999988876652 2456777887776666554 589
Q ss_pred EEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec-----CCCceEEEEE
Q 003271 704 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 774 (835)
Q Consensus 704 I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~-----~~~~V~sv~f 774 (835)
|.++|..+... +..+ .......++.|+|+|++|+++. ++.|.++|+.++ +.+..+.. |.+.... .+
T Consensus 322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 2223 2455678899999999988777 789999999987 44444433 2221222 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEEcCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEeC
Q 003271 775 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 835 (835)
Q Consensus 775 spdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~l~~h~~~V~~la~spdg~~LaSgs~-------DG~V~IWd 835 (835)
+|++..+++.+ .++.|.+||..+ .+.+ .+......-..|.++|++++|..... ..+|.|||
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866566555 457999999987 5555 44433333355778999998887663 34788775
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.64 E-value=1.4e-14 Score=159.84 Aligned_cols=235 Identities=10% Similarity=0.056 Sum_probs=162.9
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEE-------------------EEECCCCCEEEEE----
Q 003271 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS---- 615 (835)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~s-------------------v~fspdg~~Latg---- 615 (835)
.++.|+|||++|+.++.++.|++||+.+++....+..+.....+ +.|+|+++.++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 34789999999999999999999999988876666545443333 4567888776654
Q ss_pred -ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC-CCCcEEEEEeCC-----CcEEEEECCCCeeeeEeec----Cce
Q 003271 616 -SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKS----GAT 684 (835)
Q Consensus 616 -s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp-~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~~----~i~ 684 (835)
..+..|++||+.+++. ..+..+...+..+.|+| ++..++++.... ..|++||+..++....... .+.
T Consensus 164 ~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT 241 (396)
T ss_dssp TCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred CCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence 3567899999988663 33345677899999999 666555544322 4699999876654333221 256
Q ss_pred EEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CCCEEEEEe-----------------
Q 003271 685 QMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS----------------- 741 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs----------------- 741 (835)
.++|+|++..|++++.+ +.|++||+.+++....... . .+. +.|+| +|++|++++
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~ 318 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN 318 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence 68999999988877654 3499999998865443321 1 233 89999 999888753
Q ss_pred CCeEEEEEcCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEcC-C--eEEEEEcCCCcEEE
Q 003271 742 DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGCY-E--TLELWNMTENKTLT 802 (835)
Q Consensus 742 Dg~I~IwDl~t~~~~~~i~~l~~~~~-----------~V~sv~fspdg~~L~sgs~d-g--~I~IwDl~~~~~~~ 802 (835)
+..|++||+.++.. ..+..+.. .+..++|+|+++.|++++.+ + .|+++|+.++....
T Consensus 319 ~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 319 DPFLYVLNTKAKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL 389 (396)
T ss_dssp CCEEEEEETTTTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred CCcEEEEecccCce----EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence 36899999987632 22333332 25667899999998888764 4 56666776666543
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=1.1e-13 Score=147.68 Aligned_cols=236 Identities=9% Similarity=0.073 Sum_probs=170.1
Q ss_pred EEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271 589 VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (835)
Q Consensus 589 ~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i 667 (835)
.+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.++++++++. ++++...++.|.+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLER 94 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEE
Confidence 3445555667788999999998 7788888999999999875 455666778899999999986 6666666789999
Q ss_pred EECCCCeeeeEee-------cCceEEEEecCCCEEEEE----Ec-------------CCcEEEEECCCCeEEEEEcCCCC
Q 003271 668 WSINNGSCAGVFK-------SGATQMRFQPRLGRILAA----AI-------------ENYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 668 wDl~s~~~~~~~~-------~~i~~l~fsp~~~~ll~~----s~-------------dg~I~IwDl~t~~~i~~l~~h~~ 723 (835)
||..+++...... ..+..++++++|..+++. +. .+.|..+|.. ++.. .+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC
Confidence 9998887544322 125679999998877763 21 3467777765 4433 3445667
Q ss_pred CeEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 724 QVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~-t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
....++|+|++++|++.+ ++.|++||+. ++........+..+...+..++++++|..++ ++ ++.|.+||.......
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~~~ 250 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDELG 250 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCEEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCEEE
Confidence 789999999999985555 7899999997 3311011222233455677899999998544 44 889999998743333
Q ss_pred EeccCCCCeeEEEE-eCCCCEEEEEECCCcEEE
Q 003271 802 TLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 833 (835)
Q Consensus 802 ~l~~h~~~V~~la~-spdg~~LaSgs~DG~V~I 833 (835)
.+..+.. +.+++| .++++.|++++.++.+++
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 5666666 999999 588888888888765544
No 188
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.63 E-value=1.8e-12 Score=137.20 Aligned_cols=273 Identities=8% Similarity=-0.016 Sum_probs=192.8
Q ss_pred ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
+......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34456789999999999988877778999999988 55543 233344679999999999888777668899999988 5
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-ee---cCceEEEEecCCCEEEEEEcCCcEE
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK---SGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-~~---~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
.............+.++++.+++. ++++...++.|..||.. ++.... +. .....+++.+++..+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222232446789999999875 66666667899999988 554422 22 3367889999988554444468899
Q ss_pred EEECCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271 706 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783 (835)
Q Consensus 706 IwDl~t~~~i~-~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s 783 (835)
+||. +++... ....+...+.+++++++|.++++.. .+.|.+||. ++. .....+......+.++++++++..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9998 554433 2223456789999999998777766 678999998 331 122223334567899999999985444
Q ss_pred EEcCCeEEEEEcCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 784 IGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 784 gs~dg~I~IwDl~~~~~~~--l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
...++.|.+||. ++.... +......+.+++++++|.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 445689999998 455443 333456789999999998766654 4 55554
No 189
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=8.8e-14 Score=154.36 Aligned_cols=271 Identities=10% Similarity=0.064 Sum_probs=194.2
Q ss_pred EEEeCCCCEEEEEeC-----CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEe
Q 003271 561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 625 (835)
Q Consensus 561 l~fSpdg~~Lasgs~-----Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWD 625 (835)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||+++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445689988888765 679999999999999998765555 4 99999999988876 367899999
Q ss_pred cCCCCceeEEee-cC------CCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEE
Q 003271 626 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILA 697 (835)
Q Consensus 626 l~t~~~~~~~~~-~h------~~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~ 697 (835)
..+.+. +..+. +. ......+.|+|+|++++++.. .++.|.++|+.+++.+..+..+-....+......+++
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 194 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence 998775 44332 21 124667999999998887764 3789999999999999888755433344444567788
Q ss_pred EEcCCcEEEEECCC-CeEEEEEcCC----CCCeE-EEEEc-CCCCEEEEEeCCeEEEEEcCCCCCcceEEEee---c---
Q 003271 698 AAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C--- 764 (835)
Q Consensus 698 ~s~dg~I~IwDl~t-~~~i~~l~~h----~~~I~-sl~fs-pdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~---~--- 764 (835)
.+.||.+.++++.+ ++.......+ ...+. ...|. ++|++++...+|.|+++|+.+... ..+..+. .
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~ 273 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAER 273 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccccc
Confidence 89999999999986 5543322111 12222 23554 688777766689999999976531 1222221 0
Q ss_pred ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CC
Q 003271 765 ----TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HD 828 (835)
Q Consensus 765 ----~~~~V~sv~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~D 828 (835)
....+..+++++++..+++... .+.|.++|+.+++++....-...++.|+|++|++ +|+++. .+
T Consensus 274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence 1123335777999999998764 2479999999999985544455789999999997 666654 58
Q ss_pred CcEEEeC
Q 003271 829 KCVKIWK 835 (835)
Q Consensus 829 G~V~IWd 835 (835)
+.|.|+|
T Consensus 354 ~~VsViD 360 (386)
T 3sjl_D 354 KTLYIHD 360 (386)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 8999886
No 190
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.62 E-value=1.3e-12 Score=145.60 Aligned_cols=266 Identities=10% Similarity=0.009 Sum_probs=185.2
Q ss_pred EeCCCCEEEEEeC--CC---eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEecC
Q 003271 563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 627 (835)
Q Consensus 563 fSpdg~~Lasgs~--Dg---~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWDl~ 627 (835)
..++++++++... .. .|.+||..+++.+.++.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777766653 22 8899999999999888755444 999999999999886 36789999998
Q ss_pred CCCceeEEeecC-------CCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-eecCceEEEEecCC-CEEEE
Q 003271 628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKSGATQMRFQPRL-GRILA 697 (835)
Q Consensus 628 t~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~-~~~~i~~l~fsp~~-~~ll~ 697 (835)
+.+. +..+... ......+.|+|+|++++++... ++.|.++| .+++.+.. +..+.. +.+.+.+ ..+++
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~~~~~~~~~~~~~ 182 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-YHIHPGAPSTFYL 182 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-EEEEeCCCceEEE
Confidence 7664 3333211 1235589999999988776644 68899999 99998877 665433 4555655 45566
Q ss_pred EEcCCcEEEEECCCCeEEEEEc-----CCCCCe-EEEEEcCCCCEEEE-EeCCeEEEEEcCCCCCcceEEEeec------
Q 003271 698 AAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSC------ 764 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~-----~h~~~I-~sl~fspdg~~Las-gsDg~I~IwDl~t~~~~~~i~~l~~------ 764 (835)
.+.||.+.++|. +++.+.... ....++ ....+.+++..++. ..++.|.+.|+..... ..+..+..
T Consensus 183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRK 260 (373)
T ss_pred EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCccc
Confidence 777899999999 776663321 111221 23455666544443 3478999999975421 22222211
Q ss_pred ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CC
Q 003271 765 ----TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HD 828 (835)
Q Consensus 765 ----~~~~V~sv~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~D 828 (835)
.......+.++|+++.++++.. .+.|.++|+.+++.+..........+++|+|||+ +++++. .+
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~ 340 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT 340 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC
Confidence 1122445789999998888764 3589999999999875445555789999999999 777777 58
Q ss_pred CcEEEeC
Q 003271 829 KCVKIWK 835 (835)
Q Consensus 829 G~V~IWd 835 (835)
+.|.|||
T Consensus 341 ~~V~ViD 347 (373)
T 2mad_H 341 EVLHIYD 347 (373)
T ss_pred CeEEEEE
Confidence 9999986
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=1.5e-13 Score=143.86 Aligned_cols=236 Identities=8% Similarity=-0.040 Sum_probs=168.1
Q ss_pred CEEEEEEeCCCCEEE-EEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 557 ~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
...+++++++|++++ +...++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578999999999777 446789999999866554332233445788999999998666555 88999999876543 22
Q ss_pred ee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271 636 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET 711 (835)
Q Consensus 636 ~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t 711 (835)
+. .....+.++++++++. ++++...++.|.+|+..+........ .....+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999876 67677778899999876554332221 2467899999887555555578999999987
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003271 712 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 790 (835)
Q Consensus 712 ~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I 790 (835)
.........+...+.+++++++|.++++.. ++.|.+||.... ........+...+..+++++++..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST---TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS---CCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC---cceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777766 789999998664 2222222233578999999999877777778899
Q ss_pred EEEEcCCCc
Q 003271 791 ELWNMTENK 799 (835)
Q Consensus 791 ~IwDl~~~~ 799 (835)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=2.4e-14 Score=172.31 Aligned_cols=245 Identities=10% Similarity=0.011 Sum_probs=168.1
Q ss_pred CCCCCEEEEEEeCCCCEEEE-----EeCCCeEEEEEcCCCeEEEEeccCCCCe--EEEEECCCCCEEEEEECCCe-----
Q 003271 553 ASTSKVESCHFSPDGKLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 620 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Las-----gs~Dg~I~VWd~~t~~~i~~l~~h~~~V--~sv~fspdg~~Latgs~Dg~----- 620 (835)
+|...+.+++|||||++||. |+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 45667999999999999984 3345689999999987641 1122223 68999999999999998876
Q ss_pred --------EEEEecCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEee--cCce
Q 003271 621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFK--SGAT 684 (835)
Q Consensus 621 --------I~IWDl~t~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-g--~I~iwDl~s~~~~~~~~--~~i~ 684 (835)
|++|++.++.. .+.....|...+.++.|+|+|+.++++...+ + .|++||..+++...... ....
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987653 2222334556789999999998877666543 2 67777766554433332 2344
Q ss_pred EEEEecCCCEEEEEEc----CCcEEEEECCCCeE---EEEEcCC-CCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271 685 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 755 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~----dg~I~IwDl~t~~~---i~~l~~h-~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~ 755 (835)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++.. |+..+||.+...
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-- 350 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-- 350 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence 4445 6666 666554 47899999987642 3333333 4567888888 666777766 887777766521
Q ss_pred cceEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCcEEEec
Q 003271 756 GECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 804 (835)
Q Consensus 756 ~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l~ 804 (835)
...+..+..+ ...+..+.++|++..|++...+ +.|++||+.+++...+.
T Consensus 351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 1345555544 5567778899999877755443 58999999988765443
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=3.1e-13 Score=147.50 Aligned_cols=252 Identities=8% Similarity=-0.017 Sum_probs=179.4
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
....+++. +++++++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+.+. ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 45677775 34556666668999999999999998885 346788999988885444444899999999998764 3333
Q ss_pred ecCC-----CCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcC-------
Q 003271 637 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIE------- 701 (835)
Q Consensus 637 ~~h~-----~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~d------- 701 (835)
.... .....+++ ++..++++.. .++.|.+||+.+++.+..+.. ....++++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14566777 3455666654 488999999999998877763 35678899988765555444
Q ss_pred ---CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271 702 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777 (835)
Q Consensus 702 ---g~I~IwDl~t~~~i~~l~~h-~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd 777 (835)
+.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887766532 346899999999998887655 89999998764211 1111112467889999996
Q ss_pred CCEEEEEE-----cCCeEEEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271 778 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAAS 816 (835)
Q Consensus 778 g~~L~sgs-----~dg~I~IwDl~~~~~~~l~~h~~~V~~la~s 816 (835)
+..|+++. .++.|.+||.. ++.+....-......++|-
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~ 320 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK 320 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence 65566665 56799999998 7766433334455666653
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=5.6e-13 Score=160.79 Aligned_cols=266 Identities=8% Similarity=-0.018 Sum_probs=180.9
Q ss_pred CCCCEEEEEeCCC-----eEEEEEcCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEECCC-----eEEEEecCC
Q 003271 565 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 628 (835)
Q Consensus 565 pdg~~Lasgs~Dg-----~I~VWd~~t~~~i~~l------~~h~~~V~sv~fspdg~~Latgs~Dg-----~I~IWDl~t 628 (835)
|||++++....++ .|++.+...++....+ .+|...+..++|+|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888877654332 3455554444433222 23445688999999999998776543 899999998
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc----------------EEEEECCCCeee--eEeec-----CceE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKS-----GATQ 685 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~----------------I~iwDl~s~~~~--~~~~~-----~i~~ 685 (835)
++.....+.. ..+.+++|+||++.++++.. ++. |++|++.++... ..+.. ....
T Consensus 161 g~~~~~~~~~--~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLER--VKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEEE--ECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCcccccC--cccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 7643222222 23678999999987776554 433 999999887532 22221 2568
Q ss_pred EEEecCCCEEEEEEc-----CCcEEEEECCC------Ce-EEEEEcCCCCCeEEEEEcCCCCEEEEEe--C---CeEEEE
Q 003271 686 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--D---ELVRVW 748 (835)
Q Consensus 686 l~fsp~~~~ll~~s~-----dg~I~IwDl~t------~~-~i~~l~~h~~~I~sl~fspdg~~Lasgs--D---g~I~Iw 748 (835)
+.|+|++++|++++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ + ..|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 899999999998876 56899999986 42 34555556666655 4888998877666 2 269999
Q ss_pred EcCCCCCcceEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271 749 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 823 (835)
Q Consensus 749 Dl~t~~~~~~i~~l~~~~~--~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La 823 (835)
|+.++.. .....+..+.. .+..++|++++..+++...++ .|++||+.+++.+ .+..+.+.|..+++++++..|+
T Consensus 317 d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCc-ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 9987632 12334444433 678899997777777787787 5777888677654 6666778899999999987555
Q ss_pred EE-E---CCCcEEEeC
Q 003271 824 SA-S---HDKCVKIWK 835 (835)
Q Consensus 824 Sg-s---~DG~V~IWd 835 (835)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 3 246777775
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=1.2e-12 Score=139.62 Aligned_cols=239 Identities=10% Similarity=0.045 Sum_probs=177.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC-CCCe
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 643 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V 643 (835)
.+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+ +.++.|..||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 46789999999999999999999999998776 5789999999999888 45788999999 6664 5555544 3578
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILAAAIENYISILDVETQVC 714 (835)
Q Consensus 644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~ 714 (835)
.++.+.++|+.+++.++.++.|..+|. +++.+..+.. ....+++.++++++++...++.|.+||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998855543433778888886 6777666542 13456788999999888889999999998 999
Q ss_pred EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 003271 715 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 715 i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~------~~V~sv~fspdg~~L~sgs~d 787 (835)
+..+... ..+.++.+.++|.+++++. ++.|..||..++ +.+.++.... ..+..+...++|..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9888754 4566788889999999888 668999999887 5666665322 237888889999877665421
Q ss_pred --------CeEEEEEc-CCCcEE-EeccC--CCCeeEEE
Q 003271 788 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA 814 (835)
Q Consensus 788 --------g~I~IwDl-~~~~~~-~l~~h--~~~V~~la 814 (835)
+..+++++ .+++++ .+..+ -+.|.++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23456666 456655 33322 24455544
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.57 E-value=3.7e-13 Score=140.87 Aligned_cols=231 Identities=7% Similarity=-0.081 Sum_probs=164.2
Q ss_pred CeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271 599 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (835)
Q Consensus 599 ~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~ 677 (835)
...++++++++++++ +...++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 678999999998777 446788999999765442 111123335688999999877 665555 8899999987654432
Q ss_pred Ee-e--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271 678 VF-K--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 753 (835)
Q Consensus 678 ~~-~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~ 753 (835)
.. . .....+++++++..+++...++.|.+||..+.............+.+++++++|+++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1 3477899999887555555678999998766544333333345678899999999777766 789999998765
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-~h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
............+..+++++++..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus 182 ---~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 ---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp ---CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred ---ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 222222233367899999999965555556779999999776655433 3346789999999999888888999999
Q ss_pred EeC
Q 003271 833 IWK 835 (835)
Q Consensus 833 IWd 835 (835)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=3e-11 Score=127.55 Aligned_cols=237 Identities=10% Similarity=0.026 Sum_probs=166.5
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~ 631 (835)
.+...+.+++++++|.++++...++.|.+||.. ++. ...+......+.++++.+++.++++...++.|.+||. ++..
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 345679999999999988887778899999986 333 2223334567899999999988888777889999998 4443
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-ee---cCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK---SGATQMRFQPRLGRILAAAIENYISIL 707 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-~~---~~i~~l~fsp~~~~ll~~s~dg~I~Iw 707 (835)
.......+...+.++++++++. ++++...++.|.+||. +++.... .. ..+..+++++++..+++...++.|.+|
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 2222333456789999999875 6666666789999999 6655432 22 236688999987755554457899999
Q ss_pred ECCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 708 DVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 708 Dl~t~~~i~~-l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
|. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++. .....+..+...+.++++ +++. |++++
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~~~~~~~~~~~~~~~i~~-~~g~-l~v~~ 283 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI--IEEYPIQIKSAEPHGICF-DGET-IWFAM 283 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE--EEEEECSSSSCCEEEEEE-CSSC-EEEEE
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc--eEEEeCCCCCCccceEEe-cCCC-EEEEe
Confidence 99 6654332 333557799999999999777765 789999998 331 111223344567899999 8777 45555
Q ss_pred cCCeEEEEEcCCCc
Q 003271 786 CYETLELWNMTENK 799 (835)
Q Consensus 786 ~dg~I~IwDl~~~~ 799 (835)
..+.|..++..+++
T Consensus 284 ~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 284 ECDKIGKLTLIKDN 297 (299)
T ss_dssp TTTEEEEEEEC---
T ss_pred cCCcEEEEEcCccc
Confidence 56788888876654
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=2.7e-11 Score=134.86 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=172.6
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCCCCE
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSR 611 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspdg~~ 611 (835)
..++....+ .++|+|||++|+++. .++.|.+||..+++.+..+... ......++|+|||++
T Consensus 61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence 344443344 899999999998886 3678999999998888776432 123458999999999
Q ss_pred EEEEEC--CCeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cC-
Q 003271 612 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SG- 682 (835)
Q Consensus 612 Latgs~--Dg~I~IWDl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~- 682 (835)
|+++.. ++.|.++| .+++. +.. +. .. .|+.+.|++...+++.+.||.+.+||. +++...... ..
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCE-EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 999874 47899999 87764 444 32 11 235566777777778888999999999 877663322 11
Q ss_pred ---ceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEcC----------CCCCeEEEEEcCCCCEEEEEe------
Q 003271 683 ---ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS------ 741 (835)
Q Consensus 683 ---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~----------h~~~I~sl~fspdg~~Lasgs------ 741 (835)
.....+.++++.++..+.++.+.++|+.... .+..+.- .......+.+++++..+++..
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 1224566777776666688999999997552 2222211 122344578899988877754
Q ss_pred -----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEe
Q 003271 742 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 803 (835)
Q Consensus 742 -----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l 803 (835)
++.|.++|+.+. +.+.++.. ......++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus 292 ~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 247999999887 66666653 44689999999999 677776 488999999999998854
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.54 E-value=5.7e-12 Score=134.73 Aligned_cols=237 Identities=10% Similarity=0.098 Sum_probs=168.1
Q ss_pred cCCCCCEEEEEEeCCCCEEEE-------EeCCCeEEEEEcCCCeEEEEec----cCCCCeEEEEECCC-CCEEEEEECCC
Q 003271 552 PASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADR 619 (835)
Q Consensus 552 ~gH~~~V~sl~fSpdg~~Las-------gs~Dg~I~VWd~~t~~~i~~l~----~h~~~V~sv~fspd-g~~Latgs~Dg 619 (835)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +.++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence 344456789999999988887 5678999999988877653322 24567899999999 655554 4455
Q ss_pred eEEEEecCCCCceeEEe-ec-----CCCCeEEEEEcCCCCcEEEEEeCC---------------CcEEEEECCCCeeeeE
Q 003271 620 TVRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGV 678 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~-~~-----h~~~V~sl~fsp~g~~ll~sgs~D---------------g~I~iwDl~s~~~~~~ 678 (835)
.|.+||.. ++. ..+ .. ....+.++++++++. ++++...+ +.|..||.. ++....
T Consensus 93 ~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 93 GLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp EEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 79999988 543 222 11 124588999999986 55555444 578888876 554333
Q ss_pred ee--cCceEEEEe----cCCCEEEEEE-cCCcEEEEECC-CCe-----EEEEEcCCC-CCeEEEEEcCCCCEEEEEe-CC
Q 003271 679 FK--SGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DE 743 (835)
Q Consensus 679 ~~--~~i~~l~fs----p~~~~ll~~s-~dg~I~IwDl~-t~~-----~i~~l~~h~-~~I~sl~fspdg~~Lasgs-Dg 743 (835)
.. .....++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|.++++.. ++
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 22 346778999 9987777665 46899999986 443 223333343 5688999999999888876 88
Q ss_pred eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCC
Q 003271 744 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 797 (835)
Q Consensus 744 ~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~ 797 (835)
.|.+||..++ ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus 248 ~i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 248 HIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999998765 344455555678999999999997766654 57899999864
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=4.1e-12 Score=140.97 Aligned_cols=260 Identities=12% Similarity=0.131 Sum_probs=178.8
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccCC-------CCeEEEEECCCCC
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLS 610 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h~-------~~V~sv~fspdg~ 610 (835)
+..+..-..+ . ++++|||++|+++. .++.|.+||..+++.+.++.-.. .....++|+|||+
T Consensus 72 ~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 72 IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence 3444444444 4 99999999887765 36789999999999998875321 2456799999999
Q ss_pred EEEEEEC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEee-------
Q 003271 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK------- 680 (835)
Q Consensus 611 ~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~~------- 680 (835)
+|+++.. ++.|.|+|+.+.+. +..+... + |..+.|.+...+++.+.||.+.+.++.+ ++......
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred EEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence 9998874 68999999998764 4444321 1 2223455555666777799999999976 55422111
Q ss_pred cCc-eEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEc---------C-CCCCeEEEEEcCCCCEEEEEe-C----
Q 003271 681 SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS-D---- 742 (835)
Q Consensus 681 ~~i-~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~---------~-h~~~I~sl~fspdg~~Lasgs-D---- 742 (835)
..+ ....|.+.++.++..+.+|.|+++|+.+.. .+..+. + ....+..+++++++..++... +
T Consensus 225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 111 124555444566667778999999997653 322221 0 122334577789988888764 1
Q ss_pred ------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEEcCCCcEEEeccCCCCeeEEE
Q 003271 743 ------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLA 814 (835)
Q Consensus 743 ------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~-dg~I~IwDl~~~~~~~l~~h~~~V~~la 814 (835)
+.|.++|+.+. +.+..+.. ...++.|+++++++ .|+++.. ++.|.++|..+++.+......+..+.|.
T Consensus 305 ~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~ 380 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 380 (386)
T ss_dssp CTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred ccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence 47999999998 56666554 34788999999996 6777654 7899999999999986555556666777
Q ss_pred EeCC
Q 003271 815 ASTV 818 (835)
Q Consensus 815 ~spd 818 (835)
+++|
T Consensus 381 ~s~d 384 (386)
T 3sjl_D 381 TTAD 384 (386)
T ss_dssp EECC
T ss_pred ECCc
Confidence 7776
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=7.5e-13 Score=159.34 Aligned_cols=266 Identities=12% Similarity=-0.005 Sum_probs=171.1
Q ss_pred eCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEE-----ECCCeEEEEecC
Q 003271 564 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE 627 (835)
Q Consensus 564 Spdg~~Lasgs~Dg-----~I~VWd~~t~~~i~~l------~~h~~~V~sv~fspdg~~Latg-----s~Dg~I~IWDl~ 627 (835)
+++|++++....++ .|.+.+...++....+ .+|...+.+++|+|||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37888887766543 3444455455433333 2455579999999999999843 345689999999
Q ss_pred CCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc-------------EEEEECCCCee--eeEee-----cCceEE
Q 003271 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFK-----SGATQM 686 (835)
Q Consensus 628 t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~-------------I~iwDl~s~~~--~~~~~-----~~i~~l 686 (835)
+++.. ...+.. .....++|+|+|+.++++ +.|.. |++|++.++.. ...+. ..+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87742 111111 112689999999866654 44544 99999988762 22222 236788
Q ss_pred EEecCCCEEEEEEcCC----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcce
Q 003271 687 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 758 (835)
Q Consensus 687 ~fsp~~~~ll~~s~dg----~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~ 758 (835)
.|+|+|.+|++++.++ .|+++|..++.... +..+...+....| ++|.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998888766 67888776654433 3335555666667 5565444443 36899999977632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcC-CCc-EEEeccC-CCCeeEEEEeCCCCEEEEEE----CCCc
Q 003271 759 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMT-ENK-TLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 830 (835)
Q Consensus 759 i~~l~~~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~-~~~-~~~l~~h-~~~V~~la~spdg~~LaSgs----~DG~ 830 (835)
...+..+ ...+..++|+ ++..+++...++..+||.+. +++ ...+..+ .+.|..+++++++..|+... ..++
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223222 4567888888 66677778888876666543 344 3345444 67788899999987665332 3467
Q ss_pred EEEeC
Q 003271 831 VKIWK 835 (835)
Q Consensus 831 V~IWd 835 (835)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.52 E-value=1.9e-12 Score=145.87 Aligned_cols=266 Identities=8% Similarity=0.043 Sum_probs=188.0
Q ss_pred CCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEecCCC
Q 003271 565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 629 (835)
Q Consensus 565 pdg~~Lasgs~D-----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWDl~t~ 629 (835)
++++.+++.... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466666555442 69999999999999999765555 899999999988886 3678999999987
Q ss_pred CceeEEee-c------CCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEeecCceEEEEecCC-CEEEEEEc
Q 003271 630 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKSGATQMRFQPRL-GRILAAAI 700 (835)
Q Consensus 630 ~~~~~~~~-~------h~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~-~~ll~~s~ 700 (835)
+. +..+. + .......+.|+|++++++++... ++.|.++|+.+.+.+..+..+-. ....|++ ..+++.+.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence 75 44332 2 12345678999999987776643 68999999999999888875433 3344443 56677788
Q ss_pred CCcEEEEECCCCeEEEEE----cCCCCCe-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec----------
Q 003271 701 ENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC---------- 764 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l----~~h~~~I-~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~---------- 764 (835)
||.+.+.++.+++..... .....++ ..+.|.+++..++..+ .+.|.+.|+..... ..+..+..
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDW 316 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccccc
Confidence 899998898666554321 1111121 2356788888777777 88999999865421 11111110
Q ss_pred CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEE
Q 003271 765 TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVK 832 (835)
Q Consensus 765 ~~~~V~sv~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~ 832 (835)
.......++++|++..+++... ++.|.++|+.+.+.+....-.....+|+|++|++ +++++. .++.|.
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 0111223689999998888753 3479999999999884444444689999999999 888888 589999
Q ss_pred EeC
Q 003271 833 IWK 835 (835)
Q Consensus 833 IWd 835 (835)
|+|
T Consensus 397 VID 399 (426)
T 3c75_H 397 IYD 399 (426)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.51 E-value=1e-12 Score=159.34 Aligned_cols=243 Identities=12% Similarity=0.046 Sum_probs=165.5
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe--------
Q 003271 554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~D-----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~-------- 620 (835)
|...+.+++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999887654 46999999999876532 12222367899999 99988887654
Q ss_pred ------EEEEecCCCCce-eEEee--cCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEECCCC--eeeeEeec---C
Q 003271 621 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFKS---G 682 (835)
Q Consensus 621 ------I~IWDl~t~~~~-~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~----Dg~I~iwDl~s~--~~~~~~~~---~ 682 (835)
|++|++.++... ...+. .+...+..+.|+|+|+.+++++.. ...|++||+.++ ++...+.. .
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999776531 22232 233458899999999877766643 348999999876 31333322 2
Q ss_pred ceEEEEecCCCEEEEEEcC----CcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003271 683 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 754 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~-t~~ 754 (835)
.... ++++++.|++.+.+ +.|.+||+.++ .....+..+...+..++|+ ++.++++.. |+..+||.+. .+
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 3333 45889999888864 45999999874 3444444455567778887 555666666 8877666554 23
Q ss_pred CcceEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEEcCCCcEEEe
Q 003271 755 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 803 (835)
Q Consensus 755 ~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~----dg~I~IwDl~~~~~~~l 803 (835)
.....+.. ....+..+.++|++..|+.... .+.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34555554 3567888999999876664433 25899999998875544
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=8e-12 Score=133.55 Aligned_cols=234 Identities=8% Similarity=-0.013 Sum_probs=162.3
Q ss_pred CCCCeEEEEECCCCCEEEE-------EECCCeEEEEecCCCCceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271 596 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNS 663 (835)
Q Consensus 596 h~~~V~sv~fspdg~~Lat-------gs~Dg~I~IWDl~t~~~~~~~~~~-----h~~~V~sl~fsp~g~~ll~sgs~Dg 663 (835)
.-....+++|++++.++++ +..++.|.+||..+++. ..+.. +...+.++++++++..++++.. ..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 3345789999999988887 57788999999887664 22222 4467899999998333554443 44
Q ss_pred cEEEEECCCCeeeeE-ee-------cCceEEEEecCCCEEEEEEcC---------------CcEEEEECCCCeEEEEEcC
Q 003271 664 EIRYWSINNGSCAGV-FK-------SGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQG 720 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~-~~-------~~i~~l~fsp~~~~ll~~s~d---------------g~I~IwDl~t~~~i~~l~~ 720 (835)
.|.+||.. ++.... .. ..+..+++++++..+++...+ +.|..||.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 79999998 665433 21 236789999998766665544 568888876 5443332 2
Q ss_pred CCCCeEEEEEc----CCCCEEEEEe--CCeEEEEEcC-CCCC--cceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeE
Q 003271 721 HKNQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETL 790 (835)
Q Consensus 721 h~~~I~sl~fs----pdg~~Lasgs--Dg~I~IwDl~-t~~~--~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg~I 790 (835)
+......++|+ ++++.|+.+. ++.|.+||+. ++.. ...+..+..+. ..+..++++++|..+++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 34457889999 9997665554 7899999986 3311 01223333333 568889999999877777788899
Q ss_pred EEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003271 791 ELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 835 (835)
Q Consensus 791 ~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~L-aSgs~DG~V~IWd 835 (835)
.+||..+++.+ .+..+...+.+++|+++++.| ++...++.|..|+
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 99999866644 445566789999999999955 4555567787764
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.45 E-value=2.7e-10 Score=120.26 Aligned_cols=234 Identities=9% Similarity=-0.021 Sum_probs=164.1
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i-~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~ 631 (835)
.+...+.+++++++|.++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..||.. +..
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 445679999999999988877768899999988 5543 2333344678999999999888877768899999987 443
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-e---cCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K---SGATQMRFQPRLGRILAAAIENYISIL 707 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~---~~i~~l~fsp~~~~ll~~s~dg~I~Iw 707 (835)
....+......+.++++.++++ ++++...++.|..||. +++..... . ..+..+++++++..+++....+.|.+|
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 214 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence 2222333456789999999877 6666666789999998 55544321 1 236788899987655544456789999
Q ss_pred ECCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 708 DVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 708 Dl~t~~~i~-~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
|. ++.... .+..+...+.+++++++|+++++.. ++.|.+||.. +. .....+......+.++++.++|. |++++
T Consensus 215 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v~~ 289 (300)
T 2qc5_A 215 TT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT--IQEYQLQTENAEPHGITFGKDGS-VWFAL 289 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEEECCSTTCCCCCEEECTTSC-EEEEC
T ss_pred cC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc--EEEEECCccCCccceeEeCCCCC-EEEEc
Confidence 98 444333 2333556789999999999777665 7899999983 31 12222333456688899999988 44455
Q ss_pred cCCeEEEEEcC
Q 003271 786 CYETLELWNMT 796 (835)
Q Consensus 786 ~dg~I~IwDl~ 796 (835)
.. .|..+|.+
T Consensus 290 ~~-~i~~~~p~ 299 (300)
T 2qc5_A 290 KC-KIGKLNLN 299 (300)
T ss_dssp SS-EEEEEEEC
T ss_pred cC-ceEEeCCC
Confidence 44 77777753
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=7.6e-12 Score=151.71 Aligned_cols=266 Identities=12% Similarity=0.023 Sum_probs=168.7
Q ss_pred eCCCCEEEEEeCCCe---EEEE--EcC---CCeEEEEe------ccCCCCeEEEEECCCCCEEEEEECC-----CeEEEE
Q 003271 564 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW 624 (835)
Q Consensus 564 Spdg~~Lasgs~Dg~---I~VW--d~~---t~~~i~~l------~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IW 624 (835)
+|||++++....++. ..|| +.. .++....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998877664432 4445 443 33332221 2344468899999999999887654 469999
Q ss_pred ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-------------cEEEEECCCCee--eeEee--c---Cce
Q 003271 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFK--S---GAT 684 (835)
Q Consensus 625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-------------~I~iwDl~s~~~--~~~~~--~---~i~ 684 (835)
|+.+++. +.. ..+...+..++|+|+ +.++++...+. .|++|++.++.. ...+. . .+.
T Consensus 195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998774 222 112222457899999 77776654322 399999987652 22222 1 267
Q ss_pred EEEEecCCCEEEEEEcCC-----cEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C----CeEEEEEcCC
Q 003271 685 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS 752 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D----g~I~IwDl~t 752 (835)
.+.|+|+|.+|++.+.++ .|++||+.++ .+...+..+...+.... +++|..|+..+ + +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 889999999998888654 8999999877 31344555555555554 48888887776 2 3699999877
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--EcCCCcEEEecc-CCCCeeEEEEeCCCCEEE-EEE--
Q 003271 753 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS-- 826 (835)
Q Consensus 753 ~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l~~-h~~~V~~la~spdg~~La-Sgs-- 826 (835)
+. ......+..+...+..+.|+ ++..+++...++..+|| ++..+....+.. +...|..++++++++.|+ +.+
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12233334444556677887 55567777778865555 544443334443 467789999999987554 332
Q ss_pred -CCCcEEEeC
Q 003271 827 -HDKCVKIWK 835 (835)
Q Consensus 827 -~DG~V~IWd 835 (835)
..++|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 346787775
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=6.5e-11 Score=126.06 Aligned_cols=213 Identities=12% Similarity=0.042 Sum_probs=162.5
Q ss_pred CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWC 583 (835)
Q Consensus 505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (835)
.++++++++.|+.|.+|...++ +.+..+..+. ..+.+++++|+|++|+ +.++.|..||
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d 62 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT 62 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence 3578999999999999943222 1223334444 4688999999999988 3578899999
Q ss_pred cCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEee------cCCCCeEEEEEcCCCCcE
Q 003271 584 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 584 ~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~------~h~~~V~sl~fsp~g~~l 655 (835)
. +++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|.+ ++. +..+. .+......+++.++++ +
T Consensus 63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~ 138 (276)
T 3no2_A 63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGN-Y 138 (276)
T ss_dssp T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSC-E
T ss_pred C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCC-E
Confidence 9 899998887653 57889999999999999887 7778878763 443 33332 1222455667888876 6
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC------CCeEE
Q 003271 656 LCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHS 727 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------~~I~s 727 (835)
+++...++.|.+||.. ++.+..+.. ....+.+.++++.++++..++.|..+|..+++.+..+..+. ..+..
T Consensus 139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~ 217 (276)
T 3no2_A 139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ 217 (276)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence 6688889999999998 998888874 46677888998888888888899999999999999886432 23778
Q ss_pred EEEcCCCCEEEEEeCC
Q 003271 728 VCWNTSGEYLASVSDE 743 (835)
Q Consensus 728 l~fspdg~~LasgsDg 743 (835)
+...++|.++++..+|
T Consensus 218 ~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 218 LFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEECTTSCEEEEEECT
T ss_pred ceEcCCCCEEEEeccC
Confidence 8889999988887643
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=7e-11 Score=133.09 Aligned_cols=228 Identities=10% Similarity=0.030 Sum_probs=160.6
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCee
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 675 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~ 675 (835)
.....|+|+++++++++...++.|++||..++.. ...... ..... ++|+++++.++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 3578999999998777777789999999987553 233332 33334 99999987555 444444 899999876654
Q ss_pred eeEe-------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE----EcCCCCCe--EEEEEcCCCCEEEEEe-
Q 003271 676 AGVF-------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS- 741 (835)
Q Consensus 676 ~~~~-------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~----l~~h~~~I--~sl~fspdg~~Lasgs- 741 (835)
...+ ......++++|+++.|+++..++.|+.||..++..... ..++...- ..++|+|++..|+.+.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 3333 13467899999778888877778999999987764333 22222222 3899999644444444
Q ss_pred -CCeEEEEEcCCCCCcceEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEec
Q 003271 742 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 804 (835)
Q Consensus 742 -Dg~I~IwDl~t~~~~~~i~~l~~~---------------~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~ 804 (835)
++.|++|+.... +..+.++ -.....+++++++.++++-. .++.|++|++.++.+..+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 789999987543 2222222 24578999999999555555 5779999998888877665
Q ss_pred cC---------------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 805 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 805 ~h---------------~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
++ -.....|++++++.++++-..+++|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 55 2468899999998888888788888765
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=2.2e-11 Score=137.23 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=173.7
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCCCC
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 610 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspdg~ 610 (835)
+..+..-..+ .++++|||++|+++. .++.|.++|..+++.+.++.-. ......++|+||++
T Consensus 112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK 189 (426)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444433445 799999999888775 3678999999999998877532 23456789999999
Q ss_pred EEEEEEC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecC--
Q 003271 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSG-- 682 (835)
Q Consensus 611 ~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~-- 682 (835)
+|+++.. ++.|.++|+.+.+. +..+.... +....|++...+++.+.||.+.+.++.+++.... +...
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~ 264 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE 264 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred EEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence 9999875 57899999998774 44443211 1344565656777777889988888866655422 1111
Q ss_pred --ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE--EEcC----------CCCCeEEEEEcCCCCEEEEEe-------
Q 003271 683 --ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS------- 741 (835)
Q Consensus 683 --i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~--~l~~----------h~~~I~sl~fspdg~~Lasgs------- 741 (835)
...+.|.++++.++..+.++.|+++|+....... .+.- .......+++++++..+++..
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 1235678999988888888999999997654321 1110 011122368999988777653
Q ss_pred ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEe
Q 003271 742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 803 (835)
Q Consensus 742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l 803 (835)
++.|.++|+.+. +.+.++.. ......+.|+|+++ .++++. .++.|.|+|+.+++.+..
T Consensus 345 hk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 345 HKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 247999999998 56666653 23588999999999 888888 488999999999998844
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=3.3e-10 Score=121.32 Aligned_cols=226 Identities=10% Similarity=0.032 Sum_probs=154.2
Q ss_pred eccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003271 593 LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (835)
Q Consensus 593 l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~ 671 (835)
+..+.....+..|+++ +.++++...++.|+.||..++.. ..+ .....+.+++++++++ ++++ . +..|.+||..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~ 81 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK 81 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence 3445556678999996 44566666788999999987653 222 2456799999999988 5444 3 5689999998
Q ss_pred CCeeeeEee-------cCceEEEEecCCCEEEEEEcC-----------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271 672 NGSCAGVFK-------SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733 (835)
Q Consensus 672 s~~~~~~~~-------~~i~~l~fsp~~~~ll~~s~d-----------g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd 733 (835)
+++...... ..+..+++++++..+++...+ +.|+.+|.. ++... +..+......++|+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence 887544332 125678999998855544322 245555543 33322 2223445688999999
Q ss_pred CCEEEEEe--CCeEEEEEcC--CCCC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC
Q 003271 734 GEYLASVS--DELVRVWSIG--SGSK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806 (835)
Q Consensus 734 g~~Lasgs--Dg~I~IwDl~--t~~~--~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h 806 (835)
++.|+.+. ++.|.+||+. ++.. ...+..+......+..++++++|...++....+.|.+||..+++.+ .+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 99776655 7899999984 4321 1122333334467889999999986666666779999999988877 55556
Q ss_pred CCCeeEEEEe-CCCCEEEEEE
Q 003271 807 DKLVSSLAAS-TVNGMVASAS 826 (835)
Q Consensus 807 ~~~V~~la~s-pdg~~LaSgs 826 (835)
...+++++|. |+++.|+.++
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEE
T ss_pred CCCceEEEEeCCCCCEEEEEc
Confidence 6789999998 7877655444
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=4.1e-10 Score=120.55 Aligned_cols=226 Identities=12% Similarity=0.117 Sum_probs=157.9
Q ss_pred ecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 551 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 551 l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
+..+..-..+..|++++ .++++...++.|..||..+++.. .+ .+...+.+++|+++++++++ . ++.|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 44455567789999964 45666667899999999887653 33 24567999999999995554 4 567999999876
Q ss_pred CceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCeeeeEee--cCceEEEEecC
Q 003271 630 DYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGSCAGVFK--SGATQMRFQPR 691 (835)
Q Consensus 630 ~~~~~~~~~-----h~~~V~sl~fsp~g~~ll~sgs~-----------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~ 691 (835)
.. ..+.. ....+.+++++|+|+ ++++... .+.|+.++.. ++...... .....++|+|+
T Consensus 84 ~~--~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 84 SA--VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp EE--EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTT
T ss_pred cE--EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCC
Confidence 53 22221 123578899999987 4444321 1344444443 33322222 33578999999
Q ss_pred CCEEEEEEc-CCcEEEEEC--CCCeE-----EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe
Q 003271 692 LGRILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 762 (835)
Q Consensus 692 ~~~ll~~s~-dg~I~IwDl--~t~~~-----i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l 762 (835)
++.++++.. ++.|.+||+ .++.. ...+..+...+..++++++|++.++.. ++.|.+||..++ +.+..+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i 236 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTV 236 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEE
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEE
Confidence 998876665 688999987 45432 223333446788999999998888777 778999999877 677777
Q ss_pred ecCCCceEEEEEe-CCCCEEEEEEcC
Q 003271 763 SCTGNKFHSCVFH-PTFPSLLVIGCY 787 (835)
Q Consensus 763 ~~~~~~V~sv~fs-pdg~~L~sgs~d 787 (835)
..+...+++|+|. |+++.|++++..
T Consensus 237 ~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 237 KLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred ECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 7777789999998 898888887764
No 212
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.40 E-value=1.1e-11 Score=149.29 Aligned_cols=244 Identities=14% Similarity=0.051 Sum_probs=167.3
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-----CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe-------
Q 003271 553 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 620 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~------- 620 (835)
+|...|..++|||||++||.+. ....|+|||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3555688999999999988543 2357999999999865431 111113578899 9999999888743
Q ss_pred ------EEEEecCCCCce-eEEe--ec-CCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCe-eeeEeecC--ce
Q 003271 621 ------VRVWDTENPDYS-LRTF--TG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKSG--AT 684 (835)
Q Consensus 621 ------I~IWDl~t~~~~-~~~~--~~-h~~~V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~~-~~~~~~~~--i~ 684 (835)
|++|++.+.... ...+ .. |...+..+.|+|+++.++++.+.+ ..|+++|+.++. ....+... ..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 999999876531 2222 23 445678899999999887776533 589999997763 23333222 22
Q ss_pred EEEEecCCCEEEEEEcC----CcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCC
Q 003271 685 QMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGS 754 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~ 754 (835)
...++++++.|++.+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++||+..+
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 22277788887776653 5799999987643 234555666655 8889999888776 55 7889988743
Q ss_pred CcceEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCcEEEec
Q 003271 755 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 804 (835)
Q Consensus 755 ~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l~ 804 (835)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+.
T Consensus 361 ---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 3334432 33557777888888877776655 69999999888765443
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=8.4e-12 Score=136.85 Aligned_cols=257 Identities=9% Similarity=-0.013 Sum_probs=170.1
Q ss_pred CCEEEEEEeCCCCEEEEEe--CCCeEEEEEcCCCeEEEEe-------ccCCCCeEEEEECCCCCEEEEEEC-----CCeE
Q 003271 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 621 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t~~~i~~l-------~~h~~~V~sv~fspdg~~Latgs~-----Dg~I 621 (835)
..+..++++++|+++++.. .++.++||.+.+++.. .+ ..|-..+.+|+|+++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6799999999999988864 2343556655455543 22 134568999999999876665433 5789
Q ss_pred EEEecCCCCceeEEeec------CCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCeeeeEeecC--ce--EEEE
Q 003271 622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKSG--AT--QMRF 688 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~sgs---~Dg~I~iwDl~s~~~~~~~~~~--i~--~l~f 688 (835)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..+ .. ...+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987763 333332 2245689999987666766665 6889999999988876655331 10 1334
Q ss_pred ecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCC---CCC--cc---e
Q 003271 689 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGS---GSK--GE---C 758 (835)
Q Consensus 689 sp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t---~~~--~~---~ 758 (835)
.+++..+.+...++.+..|. ..+..|+|+|+|++|+.+. ++ .|..++... +.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 44555555555666654442 2467899999999888887 44 666665421 100 00 0
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003271 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~--h~~~V~~la~spdg~~LaSgs~DG 829 (835)
+. ..++......++++++|..+++...++.|.+||..+++...+.. +...+.+++|.+++.++++.+..+
T Consensus 241 ~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 241 IE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred eE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 11 11233456678999999877777778899999985666543332 245689999999998888876443
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=2.7e-10 Score=128.25 Aligned_cols=230 Identities=10% Similarity=0.037 Sum_probs=164.6
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--eEEEEecCCCCcee
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 633 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~~ 633 (835)
....+++|+++++++++...++.|++||.+++.......... ... ++|++++..|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 468899999999988887778999999999887776654433 334 99999999999988866 799998876543 2
Q ss_pred EEe----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----ee--cC-c-e-EEEEecCCCEEEEEEc
Q 003271 634 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FK--SG-A-T-QMRFQPRLGRILAAAI 700 (835)
Q Consensus 634 ~~~----~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~--~~-i-~-~l~fsp~~~~ll~~s~ 700 (835)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... .. .. . . .++|+|+++.++++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 233 224567889999996565665 66788999999987764332 11 11 2 2 8999997777776664
Q ss_pred -CCcEEEEECCCCeEEEEEcCCC---------------CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEe
Q 003271 701 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 762 (835)
Q Consensus 701 -dg~I~IwDl~t~~~i~~l~~h~---------------~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l 762 (835)
++.|+.||.... +..+.++. .....++++++|+++++-. ++.|++||+.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 578999998754 22332222 3578999999999777654 569999997665 2 3333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 763 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 763 ~~~---------------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
.++ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 333 245889999999765555556678888775
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=1.4e-09 Score=118.14 Aligned_cols=219 Identities=16% Similarity=0.096 Sum_probs=153.6
Q ss_pred CEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 557 ~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
-..+.+|++++. ++++...++.|.+||..+++... +. +...|.+++|+++++++++. .+ .|.+||..++.. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EE
Confidence 457789999754 56666678899999998876543 32 34679999999999877654 44 499999987663 22
Q ss_pred eecC-----CCCeEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEc-C
Q 003271 636 FTGH-----STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAI-E 701 (835)
Q Consensus 636 ~~~h-----~~~V~sl~fsp~g~~ll~sgs~------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~-d 701 (835)
+... ...+.+++++|+|. ++++... .+.|+.++ +++...... .....++|+++++.++++.. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 2211 23588999999987 4444332 25666666 455433222 23568999999988777654 5
Q ss_pred CcEEEEECC--CC-e-----EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 702 NYISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 702 g~I~IwDl~--t~-~-----~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
+.|.+||+. ++ . ....+......+..++++++|.++++.. ++.|.+||. ++ +.+..+..+...+.++
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCP 276 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEE
Confidence 889999986 55 2 2333333445678899999999887776 689999998 44 4556666666779999
Q ss_pred EEe-CCCCEEEEEEcCC
Q 003271 773 VFH-PTFPSLLVIGCYE 788 (835)
Q Consensus 773 ~fs-pdg~~L~sgs~dg 788 (835)
+|. +++..|++++..+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 8888887776554
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.34 E-value=2.3e-11 Score=134.78 Aligned_cols=256 Identities=10% Similarity=0.029 Sum_probs=173.6
Q ss_pred EEEEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCC
Q 003271 546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS 608 (835)
Q Consensus 546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspd 608 (835)
+.+..+..-..+ .+.|+||+++|+++. .++.|.+||+.+++.+.++..+ ......++|+||
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD 134 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence 334445444445 799999999988886 3688999999999999998643 124568999999
Q ss_pred CCEEEEEEC--CCeEEE--EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Ceeee--
Q 003271 609 LSRLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG-- 677 (835)
Q Consensus 609 g~~Latgs~--Dg~I~I--WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-----~~~~~-- 677 (835)
|++|+++.. +..|.+ +|+.+ +..+.. ... +.+.|+++..+++.+.|+.+.+.|+.+ ++...
T Consensus 135 Gk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 135 SACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred CCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 999999875 357888 88876 233321 111 223466666777777899999999987 44331
Q ss_pred --EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEcCC----------CCCeEEEEEcCCCCEEEEEe--
Q 003271 678 --VFKSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGH----------KNQVHSVCWNTSGEYLASVS-- 741 (835)
Q Consensus 678 --~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h----------~~~I~sl~fspdg~~Lasgs-- 741 (835)
.+..+..... .++++.++..+. +.|.+.|+.+.. .+..+.-. ......+.|+++++.++.+.
T Consensus 207 t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 207 TGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp CTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 1111111113 777787777777 999999997542 22222110 11122268999998877643
Q ss_pred C--------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE-EE-cCCeEEEEEcCCCcEEEeccCCCCee
Q 003271 742 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV-IG-CYETLELWNMTENKTLTLSAHDKLVS 811 (835)
Q Consensus 742 D--------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s-gs-~dg~I~IwDl~~~~~~~l~~h~~~V~ 811 (835)
. +.+.++|+.+. +.+..+... .....++|+|+++++++ .. .++.|.++|+.+++.+....-.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 36779999998 555555433 26889999999985544 44 48999999999999996655556667
Q ss_pred EEEEeC
Q 003271 812 SLAAST 817 (835)
Q Consensus 812 ~la~sp 817 (835)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=2.2e-11 Score=135.54 Aligned_cols=172 Identities=14% Similarity=0.128 Sum_probs=138.9
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-----------EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
.++.+++++...+|++|+.+ .++||++++.. ....+ .+.. |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 58999999999999999987 56669865332 11222 3566 999999 89999999 889999999
Q ss_pred cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEE
Q 003271 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYIS 705 (835)
Q Consensus 626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~ 705 (835)
+.+... ......|...|.++.+.+. . +++++.||.|.+||+.++.... +...+++++|+|+| ++++..||.++
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 987663 4556667788988887765 2 6678889999999999877654 56789999999998 78899999999
Q ss_pred EEECCCCeE--EEEE------c---CCCCCeEEEEEcCCCCEEEEEe
Q 003271 706 ILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 706 IwDl~t~~~--i~~l------~---~h~~~I~sl~fspdg~~Lasgs 741 (835)
+|+...... ...+ . +|...|.+|+|.+++.++++-.
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999988775 5556 3 3788999999999999998754
No 218
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=1.6e-09 Score=119.52 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=165.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe--
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V-- 643 (835)
++..|++++.++.|..+|.++++.+..+............. +..+++++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 34577888899999999999999887765443322222222 45788888999999999998875 33332221110
Q ss_pred ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-------E---EEEe--cCCCEEEEEEcCCcEEEEE
Q 003271 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-------Q---MRFQ--PRLGRILAAAIENYISILD 708 (835)
Q Consensus 644 ---~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-------~---l~fs--p~~~~ll~~s~dg~I~IwD 708 (835)
...... + . .++.+..++.|..+|..+++.+........ . +... ..++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 2 3 455677899999999999988776653210 0 0011 1357888888899999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003271 709 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 786 (835)
Q Consensus 709 l~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~ 786 (835)
.++++.+..... ....++... +..|+.++ ++.|..+|..++ +.+..... ....+..... .+..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 999998877652 334444443 44555555 889999999988 44444431 1222233333 2457999999
Q ss_pred CCeEEEEEcCCCcEE-EeccCCCCeeE-EEEeCCCCEEEEEECCCcEEEeC
Q 003271 787 YETLELWNMTENKTL-TLSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 787 dg~I~IwDl~~~~~~-~l~~h~~~V~~-la~spdg~~LaSgs~DG~V~IWd 835 (835)
+|.|++||..+++.+ ........+.. .... +..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 999999999999987 33332333332 2332 45788889999999885
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=2e-10 Score=123.38 Aligned_cols=232 Identities=6% Similarity=0.006 Sum_probs=157.3
Q ss_pred EEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271 591 STLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (835)
Q Consensus 591 ~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD 669 (835)
..+..+........|+++++ ++++...++.|..|+.. +. ...+..+...+..++++++|+ ++++...++.|.+|+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence 33444556678899999998 56666678899999984 43 445555667899999999987 555555567899999
Q ss_pred CCCCeeeeEee-------cCceEEEEecCCCEEEE----EEc-------------CCcEEEEECCCCeEEEEEcCCCCCe
Q 003271 670 INNGSCAGVFK-------SGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQV 725 (835)
Q Consensus 670 l~s~~~~~~~~-------~~i~~l~fsp~~~~ll~----~s~-------------dg~I~IwDl~t~~~i~~l~~h~~~I 725 (835)
.. ++...... ..+..+++++++..+++ +.. .+.|+.||..+++..... .....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 86 54332211 12567999999887765 221 256888888766544333 33467
Q ss_pred EEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 726 HSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 726 ~sl~fspdg~~Lasgs-D------g~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
..++|+|+++.|+.+. . +.|++|++.... ......+ ......+..++++++|+ |++++. +.|.+|+...
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCC
Confidence 8899999999877766 4 689999987642 1111111 11234456789999998 555554 4599999854
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
.....+..+. .+.+++|+++++.|+.++.++..++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4333444443 6899999999988888887765554
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=2.6e-10 Score=122.46 Aligned_cols=232 Identities=11% Similarity=0.119 Sum_probs=159.3
Q ss_pred EecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271 550 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (835)
Q Consensus 550 ~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t 628 (835)
.+..+.....+.+|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 3445556678999999998 5677777899999998 444 34455566789999999999876665566889999986
Q ss_pred CCceeEEeecC-----CCCeEEEEEcCCCCcEEEE----EeC-------------CCcEEEEECCCCeeeeEee-cCceE
Q 003271 629 PDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFK-SGATQ 685 (835)
Q Consensus 629 ~~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s----gs~-------------Dg~I~iwDl~s~~~~~~~~-~~i~~ 685 (835)
+.. ..+..+ ...+.+++++++|. ++++ |.. .+.|+.||..+++...... .....
T Consensus 116 g~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~g 192 (305)
T 3dr2_A 116 GQA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNG 192 (305)
T ss_dssp SCE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEE
T ss_pred CCE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcc
Confidence 442 222211 13467899999986 5554 221 3568888887665443322 23567
Q ss_pred EEEecCCCEEEEEEcC------CcEEEEECCCCeEE--EEE-cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc
Q 003271 686 MRFQPRLGRILAAAIE------NYISILDVETQVCR--LKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 756 (835)
Q Consensus 686 l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i--~~l-~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~ 756 (835)
++|+|+++.++++... +.|++||+...... ..+ .........++++++|++.++. .+.|.+|+.. +
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g--- 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G--- 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---
Confidence 8999999988888775 68999998765311 111 1123445678999999965554 4459999974 3
Q ss_pred ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 794 (835)
Q Consensus 757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD 794 (835)
+.+..+.... .+.+++|.++++.|++++.++ |+.++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 4555555444 588999999999899888764 44444
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=1.9e-09 Score=117.20 Aligned_cols=219 Identities=9% Similarity=0.005 Sum_probs=148.6
Q ss_pred CeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271 599 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (835)
Q Consensus 599 ~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~ 677 (835)
...+++|++++ .++++...++.|.+||..++.. ..+. ....+.+++|+++++ +++++ +..|++||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~--~~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS--DDGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE--TTEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE--CCCEEEEECCCCcEEE
Confidence 35678899974 4566666788999999987643 2332 346799999999976 44443 3459999998887543
Q ss_pred Eee-------cCceEEEEecCCCEEEEEEc------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C
Q 003271 678 VFK-------SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 742 (835)
Q Consensus 678 ~~~-------~~i~~l~fsp~~~~ll~~s~------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D 742 (835)
... ..+..+++++++..+++... .+.|+.+| +++.... ..+......++|+++++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL-FADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE-EEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe-eCCCcccCCeEEcCCCCEEEEEECCC
Confidence 322 12678899999886554432 25677777 4544332 22334577899999998776665 6
Q ss_pred CeEEEEEcC--CC-CC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEe
Q 003271 743 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 816 (835)
Q Consensus 743 g~I~IwDl~--t~-~~--~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~s 816 (835)
+.|.+||+. ++ .. ...+..+......+..++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence 799999986 43 21 12233333344567889999999866666667899999984 5544 555566679999998
Q ss_pred -CCCCEEEEEEC
Q 003271 817 -TVNGMVASASH 827 (835)
Q Consensus 817 -pdg~~LaSgs~ 827 (835)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655443
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=1.3e-10 Score=128.66 Aligned_cols=246 Identities=11% Similarity=0.007 Sum_probs=164.3
Q ss_pred eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEecCCCCceeEEeecC-------C
Q 003271 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 640 (835)
Q Consensus 578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWDl~t~~~~~~~~~~h-------~ 640 (835)
+|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8899999999999999766666 799999999999886 368999999999875 4554322 1
Q ss_pred CCeEEEEEcCCCCcEEEEEeC-CCcEEE--EECCCCeeeeEeecCceEEEEecCC-CEEEEEEcCCcEEEEECCC-----
Q 003271 641 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKSGATQMRFQPRL-GRILAAAIENYISILDVET----- 711 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs~-Dg~I~i--wDl~s~~~~~~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t----- 711 (835)
.....+.|+|+|++++++... +..|.+ +|+.+ +..+..+- ++.+.|++ ..+++.+.|+.+.+.|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 346689999999988876644 467888 99877 44443221 12233444 3455566788888899987
Q ss_pred CeEEEE----EcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecC-------C---CceEEEEEeCC
Q 003271 712 QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVFHPT 777 (835)
Q Consensus 712 ~~~i~~----l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~-------~---~~V~sv~fspd 777 (835)
++.... +.-...+. .+..++.++++.. +.|.+.|+.+... ..+..+... . .....++++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcCC
Confidence 432211 11112233 3333444455555 8999999865321 122222110 0 11122689999
Q ss_pred CCEEEEEEc---------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003271 778 FPSLLVIGC---------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 835 (835)
Q Consensus 778 g~~L~sgs~---------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~IWd 835 (835)
++.++++.. ++.+.+||+.+.+.+....-.....+|+|++|++ ++++.. .++.|.|+|
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 999988754 2466799999999885443344689999999998 566666 589999986
No 223
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.24 E-value=2.1e-10 Score=123.35 Aligned_cols=256 Identities=10% Similarity=0.007 Sum_probs=168.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
.+.++.+.++|. |++++.+ |..||. +++.+..+......+....+. +..|++++.++.|..+|.. +.. ...+
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF 132 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence 356777777775 4445444 888886 555443333222223333333 4567788889999999988 553 4444
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQV 713 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~ 713 (835)
..+...+.++...+++. ++.++.++.|..||.. ++....+.. .+..+.+..++. +++++ +.|..|| .+++
T Consensus 133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence 44555567777776665 4456678999999999 776655542 255566666655 44444 8899999 7777
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 714 ~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
.+..+......+.++...++|.+.+++.++.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence 7777766667788889988888777665888888874 33 3444444444444455665555 48888888899999
Q ss_pred EcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 794 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 794 Dl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
|. +++.+ ........+.++....++. |..++.+|.|++.
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 96 56554 4444456677888877776 5558889988874
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=7.1e-10 Score=133.22 Aligned_cols=264 Identities=11% Similarity=0.095 Sum_probs=175.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~----------V-~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.++.|+.+|..+++.+..+..+... + ..+.+ .+..|++++.|+.|..+|..+++.+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 457777888899999999999999887543221 1 11222 3568888999999999999998864433
Q ss_pred eec-CCCCeEEEEEcC--CCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC-------------------------
Q 003271 636 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG------------------------- 682 (835)
Q Consensus 636 ~~~-h~~~V~sl~fsp--~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~------------------------- 682 (835)
... +......+...| .+..+++.++ .++.|+.||.++++.+..+...
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 322 211111111111 1233444332 3689999999999988766420
Q ss_pred ---------ceEEEEecCCCEEEEEEcCC-------------------cEEEEECCCCeEEEEEcC--CC-------CCe
Q 003271 683 ---------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQV 725 (835)
Q Consensus 683 ---------i~~l~fsp~~~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~I 725 (835)
...++++++.+.+++++.++ .|..+|.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 02578899999999988775 399999999999988764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-----------------------------------
Q 003271 726 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 766 (835)
Q Consensus 726 ~sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~----------------------------------- 766 (835)
.......+|+ +|+.++ +|.|+++|..+++ .+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE---LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCC---EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2222223564 677777 9999999999984 332211100
Q ss_pred ----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEEcCC
Q 003271 767 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 797 (835)
Q Consensus 767 ----~~V~sv~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl~~ 797 (835)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 00122688998888877632 36799999999
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++.+-...+...+....+...+.+|++++.||.|+.||
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99884333334444446667788999999999999986
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.22 E-value=1.2e-13 Score=153.60 Aligned_cols=223 Identities=14% Similarity=0.045 Sum_probs=121.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCC-CeE
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 644 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~-~V~ 644 (835)
++..|++++.|+.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 567899999999999999999999988876 5566666667787888888999999999988764 233322211 110
Q ss_pred -EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271 645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 645 -sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~ 723 (835)
+..+. .+. .+++++.++.|+.||..+++.+..+..+. ...++|+++.+++++.++.|+.||.++++.+..+..+.
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 00111 222 45677789999999999999887765432 34566788899999999999999999988765554211
Q ss_pred CeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEEcCC
Q 003271 724 QVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNMTE 797 (835)
Q Consensus 724 ~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s--gs~dg~I~IwDl~~ 797 (835)
....++..+. ..+++++ |+.|+.||..++ +.+.........+....+++++...+. ...++.++.+|..+
T Consensus 161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~t 236 (369)
T 2hz6_A 161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMS 236 (369)
T ss_dssp -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHH
T ss_pred -ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhc
Confidence 1223333321 3344455 999999999988 555555433322333344555542110 01133556666655
Q ss_pred Cc
Q 003271 798 NK 799 (835)
Q Consensus 798 ~~ 799 (835)
++
T Consensus 237 G~ 238 (369)
T 2hz6_A 237 GE 238 (369)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=2.4e-09 Score=128.34 Aligned_cols=261 Identities=12% Similarity=0.075 Sum_probs=179.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-----------eEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-----------V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.++.|+.+|..+++.+.++...... ...+++ ++..|++++.|+.|..+|..+++.+ ..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~-W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV-WH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE-ee
Confidence 446777777899999999999999887543210 112333 4568888899999999999998863 33
Q ss_pred eecC-C----CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC----------------------
Q 003271 636 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG---------------------- 682 (835)
Q Consensus 636 ~~~h-~----~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~---------------------- 682 (835)
+..+ . ..+.+ ..+. +..+++.++ .++.|+.||..+++.+..+...
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 3332 1 11111 1111 233444333 2689999999999988766421
Q ss_pred -------------ceEEEEecCCCEEEEEEcCC-------------------cEEEEECCCCeEEEEEcC--CC------
Q 003271 683 -------------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 722 (835)
Q Consensus 683 -------------i~~l~fsp~~~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~------ 722 (835)
...++++++++.+++++.++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 02468899999999887654 499999999999988764 21
Q ss_pred -CCeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-----------Cce-----------------
Q 003271 723 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF----------------- 769 (835)
Q Consensus 723 -~~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-----------~~V----------------- 769 (835)
.....+....+| ..|+.++ +|.|+++|..++ +.+..+.... ..+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG---KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC---CEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233333477 5777777 999999999998 4444332111 111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEEcCCCc
Q 003271 770 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 799 (835)
Q Consensus 770 -------~sv~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~~~~ 799 (835)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 146889998888876542 689999999999
Q ss_pred EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 800 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 800 ~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+-...+...+....+..++.+++.++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555666666777888999999999999986
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.19 E-value=6.4e-09 Score=114.70 Aligned_cols=252 Identities=8% Similarity=0.044 Sum_probs=163.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccC---------CCCeEE-EEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h---------~~~V~s-v~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
+..|++++.++.|..||.++++.+..+... ...+.+ +.. ++..|++++.++.|..+|..+++.. ..+
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~-W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVA-WQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEE-EEE
Confidence 557788888999999999999988766542 122322 222 4567888899999999999988753 333
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc--------eEEEEecCCCEEEEEEcCCcEEEEE
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA--------TQMRFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i--------~~l~fsp~~~~ll~~s~dg~I~IwD 708 (835)
...........+. + . .++.++.++.|..+|..+++.+..+.... ....+. ++.+++++.++.|..+|
T Consensus 130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 3222222222222 2 3 55577789999999999999887665431 112222 56788888899999999
Q ss_pred CCCCeEEEEEcCCCCC----eEE---EEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271 709 VETQVCRLKLQGHKNQ----VHS---VCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778 (835)
Q Consensus 709 l~t~~~i~~l~~h~~~----I~s---l~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg 778 (835)
..+++.+......... +.. +...| .+..++.++ ++.|..+|..++ +.+.... ......+.. ++
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~ 277 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG 277 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence 9999988776532110 000 00111 234566666 899999999988 4444433 223444444 35
Q ss_pred CEEEEEEcCCeEEEEEcCCCcEEE-ec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 779 PSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 779 ~~L~sgs~dg~I~IwDl~~~~~~~-l~-~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..|++++.++.|..+|..+++.+. .. .....+....+. +..|+.++.+|.|++||
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 678999999999999999999873 32 122233333433 46788888888888875
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=3.9e-09 Score=126.54 Aligned_cols=252 Identities=10% Similarity=0.051 Sum_probs=168.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccC-C----CCeEE-EEECCCCCEEEEEEC------CCeEEEEecCCCCcee
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 633 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~----~~V~s-v~fspdg~~Latgs~------Dg~I~IWDl~t~~~~~ 633 (835)
++..|++++.|+.|..+|..+++.+..+..+ . ..+.+ ..+ .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3567888899999999999999999887654 1 11211 111 1345555543 7999999999988643
Q ss_pred EEeecCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------
Q 003271 634 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS------------------- 663 (835)
Q Consensus 634 ~~~~~h~-------------------------------~~V~sl~fsp~g~~ll~sgs~Dg------------------- 663 (835)
+...... .....+++++++..+ +.+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~v-y~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTM-YVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEE-EEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEE-EEECCCCccccCCCCCccCCCCeeeE
Confidence 3322111 111357788887644 4554443
Q ss_pred cEEEEECCCCeeeeEeecC------------ceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCC------
Q 003271 664 EIRYWSINNGSCAGVFKSG------------ATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHK------ 722 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~~~------------i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------ 722 (835)
.|..+|.++++.+..+... ...+....++ ..+++++.+|.|+++|.++++.+..+....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 5999999999988776531 1122233356 578888899999999999999887664221
Q ss_pred -----CCe------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 003271 723 -----NQV------------------------HSVCWNTSGEYLASVS-D------------------------------ 742 (835)
Q Consensus 723 -----~~I------------------------~sl~fspdg~~Lasgs-D------------------------------ 742 (835)
..+ ..++|+|++.++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 011 1467889888877653 2
Q ss_pred -------------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec-cCC
Q 003271 743 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 807 (835)
Q Consensus 743 -------------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-~h~ 807 (835)
+.|..||+.++ +.+-.+.. ...+....+...+..+++++.++.|++||..+++++ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999988 55555443 334455566777888999999999999999999988 333 333
Q ss_pred CCeeEEEEeCCCCEEEE
Q 003271 808 KLVSSLAASTVNGMVAS 824 (835)
Q Consensus 808 ~~V~~la~spdg~~LaS 824 (835)
....-+.|..+|+.++.
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 33345666778874443
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.18 E-value=5.7e-09 Score=125.32 Aligned_cols=253 Identities=11% Similarity=0.064 Sum_probs=164.2
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccC--CCCeEEEEECC---CCCEEEEEE------CCCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h--~~~V~sv~fsp---dg~~Latgs------~Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.|+.|+.+|.++++.+..+... ......+..+| ++ .+++++ .++.|+.||..+++...+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 457888889999999999999998776542 11111111122 44 444443 3789999999998864333
Q ss_pred eecC------------------------------CCCeEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 003271 636 FTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 666 (835)
Q Consensus 636 ~~~h------------------------------~~~V~sl~fsp~g~~ll~sgs~Dg-------------------~I~ 666 (835)
.... ......++++|++. +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 2110 01112577888765 555666565 399
Q ss_pred EEECCCCeeeeEeecC------------ceEEEEecCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCC-CC------
Q 003271 667 YWSINNGSCAGVFKSG------------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ------ 724 (835)
Q Consensus 667 iwDl~s~~~~~~~~~~------------i~~l~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~------ 724 (835)
.||.++++.+..+... .....+..++. .+++++.+|.++++|.++++.+....... ..
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 9999999998776531 11111222443 67788889999999999999875432111 00
Q ss_pred --------------------------------eEEEEEcCCCCEEEEEe-------------------------------
Q 003271 725 --------------------------------VHSVCWNTSGEYLASVS------------------------------- 741 (835)
Q Consensus 725 --------------------------------I~sl~fspdg~~Lasgs------------------------------- 741 (835)
-..++|+|+..++++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 11267888877777652
Q ss_pred ---------------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec-
Q 003271 742 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS- 804 (835)
Q Consensus 742 ---------------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~- 804 (835)
+|.|+.||+.++ +.+-.+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+.
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 267999999998 5555554433 2333456667788999999999999999999988 443
Q ss_pred cCCCCeeEEEEeCCCC-EEEEE
Q 003271 805 AHDKLVSSLAASTVNG-MVASA 825 (835)
Q Consensus 805 ~h~~~V~~la~spdg~-~LaSg 825 (835)
.+.....-+.|..+|+ ++++.
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEE
Confidence 2322234567778887 44443
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=9.7e-10 Score=132.21 Aligned_cols=234 Identities=12% Similarity=0.084 Sum_probs=156.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEE-----CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------
Q 003271 595 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 662 (835)
Q Consensus 595 ~h~~~V~sv~fspdg~~Latgs-----~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------- 662 (835)
+|...+..++|+|||++||.+. .+..|+|||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 4556788999999999888543 2357999999998743222221 113567899 988777665432
Q ss_pred -----CcEEEEECCCCee----eeEeec----CceEEEEecCCCEEEEEEcC----CcEEEEECCCCe-EEEEEcCCCCC
Q 003271 663 -----SEIRYWSINNGSC----AGVFKS----GATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ 724 (835)
Q Consensus 663 -----g~I~iwDl~s~~~----~~~~~~----~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~-~i~~l~~h~~~ 724 (835)
..|++|++.+... +..... ....+.|+|++.+|++.... +.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987642 322222 24678899999998776542 489999998763 34445556666
Q ss_pred eEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcC
Q 003271 725 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 796 (835)
Q Consensus 725 I~sl~fspdg~~Lasgs--D---g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~ 796 (835)
.... |+++|..|+..+ + +.|.++|+.++.. .....+..+...+. .|++++.+|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 6555 566666555544 3 4899999987632 12334555555554 8899999888777654 79999998
Q ss_pred CCcEEEec-cCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003271 797 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 835 (835)
Q Consensus 797 ~~~~~~l~-~h~~~V~~la~spdg~~LaSgs~D----G~V~IWd 835 (835)
++....+. .+.+.+..+.++++++.|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 76655443 345667788888888765554443 6677765
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.15 E-value=6.8e-08 Score=101.30 Aligned_cols=245 Identities=9% Similarity=0.005 Sum_probs=160.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCeE-----EEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCC
Q 003271 568 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 641 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~-----i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~ 641 (835)
.+|+.+.. +.|+.++++.... ...+......+.+++|++++..|+.+. .++.|.++++..... .........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555543 4788888875432 111222234578999999766655554 568999999986542 223322335
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEE
Q 003271 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 715 (835)
Q Consensus 642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i 715 (835)
....+++++++..++++....+.|.++++.......... .....++++|+++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 688999999877788777778899999987543222222 246789999988888877753 68888888643322
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003271 716 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 792 (835)
Q Consensus 716 ~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~I 792 (835)
............+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22222335678999999887777666 679999998753 2222222 23445566654 556777665 469999
Q ss_pred EEcCCCcEEEe-ccCC-CCeeEEEEeCCCC
Q 003271 793 WNMTENKTLTL-SAHD-KLVSSLAASTVNG 820 (835)
Q Consensus 793 wDl~~~~~~~l-~~h~-~~V~~la~spdg~ 820 (835)
+|..+++.+.. .... .....|++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 99999987743 3222 2578888888764
No 232
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.14 E-value=6.1e-10 Score=123.90 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=129.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------------eeeEeecCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------------CAGVFKSGATQMRFQPRLGRILAAAIENYISILD 708 (835)
Q Consensus 642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-------------~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwD 708 (835)
.+..+++++... ++++|+.+ .+++|++.... ....+.. +..++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999866 66677766 56669865332 2233445 899999 88888888 889999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271 709 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 709 l~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d 787 (835)
+.+.........|...+.++.+.+.. +++++ ||.|.+||+.++. ... +...|.+++|+|+| +++|..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98766555566677888888877653 55555 9999999998763 222 34589999999999 7889999
Q ss_pred CeEEEEEcCCCcE--E-Ee------c---cCCCCeeEEEEeCCCCEEEEEE
Q 003271 788 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 788 g~I~IwDl~~~~~--~-~l------~---~h~~~V~~la~spdg~~LaSgs 826 (835)
|+|++|+.....+ . ++ . +|...|.+|.|.+++.++++-+
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999888774 2 33 2 3788999999999998887643
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=2.5e-08 Score=111.64 Aligned_cols=221 Identities=12% Similarity=0.095 Sum_probs=154.4
Q ss_pred EEe--CCCCEEEE-EeCCCeEEEEEcCCC----eEEEEec------c-CCCCeEEEEECCCCCEEEEEECC------CeE
Q 003271 562 HFS--PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 621 (835)
Q Consensus 562 ~fS--pdg~~Las-gs~Dg~I~VWd~~t~----~~i~~l~------~-h~~~V~sv~fspdg~~Latgs~D------g~I 621 (835)
.++ .++++|++ +..++.|+|+|+.+. +.+++++ . ....-..+...|++ +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 78887665 556789999999765 7777773 1 11245667888999 77776655 789
Q ss_pred EEEecCCCCceeEEeecC--C-CCeEEEEEcCCCCcEEEEEe-------------------CCCcEEEEECCCCeeeeEe
Q 003271 622 RVWDTENPDYSLRTFTGH--S-TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 679 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h--~-~~V~sl~fsp~g~~ll~sgs-------------------~Dg~I~iwDl~s~~~~~~~ 679 (835)
.++|..+.+. +..+... . ..-+.+-|+|+++ ++++.. .+.+|.+||+.+++.+..+
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998774 5555422 1 2244578899987 444553 3689999999999888877
Q ss_pred ecC-----ceEEEE--ecCCCEEEEEEc------CCcEEEEECCCCeE--EEE--EcCC----------------CCCeE
Q 003271 680 KSG-----ATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH 726 (835)
Q Consensus 680 ~~~-----i~~l~f--sp~~~~ll~~s~------dg~I~IwDl~t~~~--i~~--l~~h----------------~~~I~ 726 (835)
..+ ...+.| +|++.++++++. ++.|.+|....+.. ... +... .....
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 653 344555 999999888875 46787766544321 111 1110 24567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003271 727 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 727 sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~--------------~V~sv~fspdg~~L~sgs 785 (835)
.|.+++||++|+++. .+.|.+||+......+.+..+...+. ....+.++|+|++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 78999999975444455655554321 368899999999999998
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=1.6e-09 Score=116.48 Aligned_cols=254 Identities=10% Similarity=0.052 Sum_probs=166.1
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC
Q 003271 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (835)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~ 640 (835)
..+..++ .|.+++.++.|..|| .+++.+..+..+...+.++.+.+++. |+.++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4454556 456677788999999 88888776665555667788877765 4445444 888886 3332 22222222
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 717 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~ 717 (835)
.......+. + . .++.++.++.|..+|.. ++....+... +..+...+++ .+++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEE
Confidence 222233333 3 3 45567778999999998 7666554422 4455565554 47778888999999999 877777
Q ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 718 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 718 l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
+......+.++.+.+++.+++++ +.|..|| .++ ..+.........+.++.+.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 76556677788888888866655 8899999 555 44555555556678888888875 77788888899998544
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
............+..+.+.+++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 3333444444445556665555 456677787777765
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=8.8e-09 Score=118.95 Aligned_cols=255 Identities=10% Similarity=0.025 Sum_probs=177.0
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEecc---------------------------------CC------CCeEEEEECC---
Q 003271 570 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP--- 607 (835)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~i~~l~~---------------------------------h~------~~V~sv~fsp--- 607 (835)
|.+|+..|.|+|+-+.+++.+..+.- +. +....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 67788899999998888887766521 11 2223355554
Q ss_pred --CCCEEEEEEC-CCeEEEEecCCCCceeEEee-cCCCCeEEEEE-c-CCCCcEEEEE-----------------eCCCc
Q 003271 608 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 664 (835)
Q Consensus 608 --dg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~f-s-p~g~~ll~sg-----------------s~Dg~ 664 (835)
||++|+++.. +..|.+.|+.+.+. ...+. .....+..+++ . |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888887766 45799999998764 44332 22345888888 4 8988887764 34568
Q ss_pred EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCC--------------------------------------cE
Q 003271 665 IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIEN--------------------------------------YI 704 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg--------------------------------------~I 704 (835)
|.++|..+.+.+..+. +....++++|+++++++.+.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999998887766 3456688999999999988553 47
Q ss_pred EEEECCC--CeE-EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CcceEEEeecCCCceEE
Q 003271 705 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 771 (835)
Q Consensus 705 ~IwDl~t--~~~-i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~--------~~~~i~~l~~~~~~V~s 771 (835)
.|.|.++ +.. +..+. -.....++.++|||+++++++ +++|.++|+.+.. ....+......+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7778776 433 33333 233567899999999999988 8899999998541 01122222334567889
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEEcCC----------CcEE-EeccCCCC-----eeEEEEeCCCCEEEEEEC
Q 003271 772 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKL-----VSSLAASTVNGMVASASH 827 (835)
Q Consensus 772 v~fspdg~~L~sgs-~dg~I~IwDl~~----------~~~~-~l~~h~~~-----V~~la~spdg~~LaSgs~ 827 (835)
++|+++| ++++.. -++.|.+||+.+ ...+ ++..|-.+ -.++.+++||++|++++.
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 665554 477999999976 4444 44444332 123356899999998864
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.04 E-value=4.8e-09 Score=114.78 Aligned_cols=218 Identities=9% Similarity=0.030 Sum_probs=149.5
Q ss_pred CCeEEEEECCCCCEEEEEEC--CCeEEEEecCCCCceeEEe-------ecCCCCeEEEEEcCCCCcEEEEEeC-----CC
Q 003271 598 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 663 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~--Dg~I~IWDl~t~~~~~~~~-------~~h~~~V~sl~fsp~g~~ll~sgs~-----Dg 663 (835)
..+..|+++++++++++... ++.++||.+.++. +..+ ..+-..+.++++++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999999888642 3436666665332 2322 12456799999999965 5444332 57
Q ss_pred cEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEEEE----cCCcEEEEECCCCeEEEEEcCCCCCeE-EEE
Q 003271 664 EIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 729 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~~s----~dg~I~IwDl~t~~~i~~l~~h~~~I~-sl~ 729 (835)
.|.+||+.+++.+..+.. ....++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 899999999987766542 247899998777776665 468999999998887776655432111 133
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcC---CCc-----
Q 003271 730 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 799 (835)
Q Consensus 730 fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~---~~~----- 799 (835)
+..+|..+.+.. ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666555 66665542 2357799999999999988776 66666642 111
Q ss_pred ---EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 800 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 800 ---~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999999888889999986
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=7.6e-08 Score=107.70 Aligned_cols=217 Identities=9% Similarity=-0.023 Sum_probs=146.9
Q ss_pred CCCCEEEEE-ECCCeEEEEecCCCCc---eeEEee------c-CCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEE
Q 003271 607 PSLSRLATS-SADRTVRVWDTENPDY---SLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWS 669 (835)
Q Consensus 607 pdg~~Latg-s~Dg~I~IWDl~t~~~---~~~~~~------~-h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwD 669 (835)
.+.++|++. ..+++|.|+|+.+... ..+++. . .......+.+.|+| +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 777777665 4578999999974411 223331 1 11245567788998 66666555 7899999
Q ss_pred CCCCeeeeEeecC------ceEEEEecCCCEEEEEE-------------------cCCcEEEEECCCCeEEEEEcCCC--
Q 003271 670 INNGSCAGVFKSG------ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQGHK-- 722 (835)
Q Consensus 670 l~s~~~~~~~~~~------i~~l~fsp~~~~ll~~s-------------------~dg~I~IwDl~t~~~i~~l~~h~-- 722 (835)
.++.+.+..+..+ ...+.|+|+++.+++.. .+..|.+||+.+++.+.++....
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888632 33478899999888774 36899999999988887776421
Q ss_pred CCeEEEEE--cCCCCEEEEEeC-------CeEEEEEcCCCCCcceEEEe--ec----------------CCCceEEEEEe
Q 003271 723 NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFHSCVFH 775 (835)
Q Consensus 723 ~~I~sl~f--spdg~~LasgsD-------g~I~IwDl~t~~~~~~i~~l--~~----------------~~~~V~sv~fs 775 (835)
.....+.| +|++++++++.. ++|.+|....+. ...+..+ .. .......+.++
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23445655 999998776543 478777665431 1222211 11 02457889999
Q ss_pred CCCCEEEEEEcC-CeEEEEEcCCC---cEEEeccCC---------------CCeeEEEEeCCCCEEEEEE
Q 003271 776 PTFPSLLVIGCY-ETLELWNMTEN---KTLTLSAHD---------------KLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 776 pdg~~L~sgs~d-g~I~IwDl~~~---~~~~l~~h~---------------~~V~~la~spdg~~LaSgs 826 (835)
+|+++|+++... +.|.+||+... +.+....-. +....++++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999998874 59999998632 333211111 1368899999999998887
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=4e-08 Score=117.55 Aligned_cols=262 Identities=12% Similarity=0.080 Sum_probs=170.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~----------V-~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.++.|+.+|..+++.+.++...... + ..+++ .+..|++++.|+.|..+|..+++.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 446777778899999999999999887543221 0 11222 3557888889999999999998864433
Q ss_pred eecCC---CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC------------------------
Q 003271 636 FTGHS---TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG------------------------ 682 (835)
Q Consensus 636 ~~~h~---~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~------------------------ 682 (835)
..... ..+.+ ..+. + ..+++.++ .+|.|+.||.++++.+..+...
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 32211 11111 1111 2 33443332 2589999999999988766421
Q ss_pred ----------ceEEEEecCCCEEEEEEcCC-------------------cEEEEECCCCeEEEEEcC--CC-------CC
Q 003271 683 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 724 (835)
Q Consensus 683 ----------i~~l~fsp~~~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~ 724 (835)
...+++++..+.+++++.++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 01368888889998887765 399999999999988764 22 22
Q ss_pred eEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC------------Cc--------------------
Q 003271 725 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 768 (835)
Q Consensus 725 I~sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~------------~~-------------------- 768 (835)
+....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 577777 9999999999984 332211110 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEEcCCCcEEEeccCCC
Q 003271 769 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 808 (835)
Q Consensus 769 ----V~sv~fspdg~~L~sgs------------------------------------~dg~I~IwDl~~~~~~~l~~h~~ 808 (835)
...++++|+...+++.. .++.|..||+.+++.+-...+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 01257788777666532 23789999999999883333334
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 809 LVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 809 ~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+....+...+.+|+.++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444445556788899999999999986
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.98 E-value=3.8e-10 Score=125.22 Aligned_cols=199 Identities=9% Similarity=-0.002 Sum_probs=110.2
Q ss_pred CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc----
Q 003271 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---- 683 (835)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i---- 683 (835)
++..|++++.|+.|+.||..+++. +..+.. ..+.+..+..++. ++++++.|+.|+.||..+++.+..+....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 567899999999999999999885 444443 4455555555554 56677889999999999988765554221
Q ss_pred -eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271 684 -TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 684 -~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~ 761 (835)
....+ ..++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++ |+.|+.||.++++. +..
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~---~W~ 155 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL---RWN 155 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC---CCE
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE---EEe
Confidence 11111 145678888899999999999999888776543 234556777788777 89999999998843 222
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeE-EEEeCCCC
Q 003271 762 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 820 (835)
Q Consensus 762 l~~~~~~V~sv~fspdg---~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~-la~spdg~ 820 (835)
+... .....++..+. ..+++++.++.|+.||..+++.+-......++.. ..++.++.
T Consensus 156 ~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 156 ATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred Eecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 2111 01222333332 5688899999999999999998744344455543 33444553
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=1.3e-07 Score=99.65 Aligned_cols=204 Identities=10% Similarity=0.023 Sum_probs=146.5
Q ss_pred CeEEEEeccCCC--CeEEEEECCCCCEEEEEEC--CCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeC
Q 003271 587 FTVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDN 661 (835)
Q Consensus 587 ~~~i~~l~~h~~--~V~sv~fspdg~~Latgs~--Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~ 661 (835)
.+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++. +..+. +.......+++. ++.++++...
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556663 443 4689999998654444443 57999999999875 44432 222233455655 5568778888
Q ss_pred CCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----CCeEEEEEcCCCC
Q 003271 662 NSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 735 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~fspdg~ 735 (835)
++.|.++|..+.+.+..+..+ .....++++++.++++..++.|.++|..+.+.+..+.-.. ..+..+.|. +|.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 999999999999999888755 4456677888888888878999999999988877765321 246678887 675
Q ss_pred EEEEEe-CCeEEEEEcCCCCCcceEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCC
Q 003271 736 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 798 (835)
Q Consensus 736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-------------~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~ 798 (835)
+++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.+++++. .++|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 555544 789999999998 555555432 135689999999987777764 568888887554
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=3.4e-08 Score=114.15 Aligned_cols=231 Identities=12% Similarity=0.122 Sum_probs=165.5
Q ss_pred CCCEEEEEeC-CCeEEEEEcCCCeEEEEeccC-CCCeEEEEE-C-CCCCEEEEEE------------------CCCeEEE
Q 003271 566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 623 (835)
Q Consensus 566 dg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~f-s-pdg~~Latgs------------------~Dg~I~I 623 (835)
||++|++... ++.|.+.|+++.++...+.-- ...+..+++ + |+++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888877765 457999999999988855322 245888898 5 8999999885 2468999
Q ss_pred EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------CcEE
Q 003271 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 666 (835)
Q Consensus 624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-------------------------------------g~I~ 666 (835)
+|.++.+.......+. ....++++|+|+.+++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999876433333322 356678999998888777443 2478
Q ss_pred EEECCC--Cee-eeEee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCe------------EEEEEcCCCCCeEEE
Q 003271 667 YWSINN--GSC-AGVFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 728 (835)
Q Consensus 667 iwDl~s--~~~-~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~------------~i~~l~~h~~~I~sl 728 (835)
+.|..+ ++. +..+. ....++.++|||+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 544 44454 34778999999999888775 6899999999653 344443 34567889
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCC-------CCcceEEEeecCCCceEE-----EEEeCCCCEEEEEEcCC--eE--
Q 003271 729 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFHS-----CVFHPTFPSLLVIGCYE--TL-- 790 (835)
Q Consensus 729 ~fspdg~~Lasgs--Dg~I~IwDl~t~-------~~~~~i~~l~~~~~~V~s-----v~fspdg~~L~sgs~dg--~I-- 790 (835)
+|+++| ++++.. |+.|.+||+... +....+..+..+..+-.. +.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666665 999999999762 112567777766553321 24589999999987632 44
Q ss_pred ---------EEEEcCCCcE
Q 003271 791 ---------ELWNMTENKT 800 (835)
Q Consensus 791 ---------~IwDl~~~~~ 800 (835)
.++|+.+++.
T Consensus 416 ~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCSSCCEEEEEEECSSSSC
T ss_pred CCCCCCCcceEEEcCCCcE
Confidence 8899976653
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=7.8e-07 Score=93.13 Aligned_cols=221 Identities=7% Similarity=0.012 Sum_probs=142.6
Q ss_pred CEEEEEECCCeEEEEecCCCCce----eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cC
Q 003271 610 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SG 682 (835)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~t~~~~----~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~ 682 (835)
.+|+.+.. +.|+.++++..... ...+......+.+++|++++..++++...++.|..+++........+. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 47888888764421 111221224578999999878788888788999999998665443333 24
Q ss_pred ceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCcc
Q 003271 683 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 757 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---g~I~IwDl~t~~~~~ 757 (835)
...++++++++.++++.. .+.|.++++..................++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 678999998888887765 57899999875433222322235678999999766655554 3 5888888764321 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 758 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 758 ~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+ ..........+++++++..|+++... +.|.++|+.......+.........|++. .+.++++....+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence 11 12233567899999998888777764 59999999866544333333445677765 344444444556777654
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.91 E-value=2.3e-07 Score=108.93 Aligned_cols=261 Identities=11% Similarity=0.104 Sum_probs=165.5
Q ss_pred CCEEEEEeC-CCeEEEEEc-CCCeEEEEeccCCC-Ce----------EEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271 567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (835)
Q Consensus 567 g~~Lasgs~-Dg~I~VWd~-~t~~~i~~l~~h~~-~V----------~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~ 633 (835)
+..|++++. ++.|..+|. .+++.+..+..... .+ ..+++ .+..|++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666666 899999999 89999877643221 00 11223 35678888899999999999988643
Q ss_pred EEeecC-C--CCeE-EEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEeecC--c-------------------
Q 003271 634 RTFTGH-S--TTVM-SLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKSG--A------------------- 683 (835)
Q Consensus 634 ~~~~~h-~--~~V~-sl~fsp~g~~ll~sgs~-----Dg~I~iwDl~s~~~~~~~~~~--i------------------- 683 (835)
+.-... . ..+. ...+. + ..+++.+.. ++.|+.+|..+++.+..+... .
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 322211 0 0111 11111 2 334443332 789999999999988766532 1
Q ss_pred --------------------eEEEEecCCCEEEEEEcC----------------CcEEEEECCCCeEEEEEcC--CC---
Q 003271 684 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--HK--- 722 (835)
Q Consensus 684 --------------------~~l~fsp~~~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~--h~--- 722 (835)
..+++.+..+.+++++.+ +.|..+|.++++.+..+.. |.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 135677777888877642 2599999999999888753 21
Q ss_pred -----CCeEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-------------Cce-----------
Q 003271 723 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF----------- 769 (835)
Q Consensus 723 -----~~I~sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-------------~~V----------- 769 (835)
.++. +....+|+ +++.++ +|.++++|..++ +.+..+.... .++
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG---NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC---CEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1221 22224674 566666 889999999988 4443332211 111
Q ss_pred ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEEcCC
Q 003271 770 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE 797 (835)
Q Consensus 770 ---------------~sv~fspdg~~L~sgs~-------------------------------------dg~I~IwDl~~ 797 (835)
..++++|+...|++... ++.|..||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 23578888877777642 46899999999
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
++.+-...+...+....+...+.+|+.++.||.|+.||
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 99873333333344433444566778889999999886
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.90 E-value=3.4e-06 Score=102.78 Aligned_cols=263 Identities=7% Similarity=0.050 Sum_probs=179.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-------h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
...|.++...++|.+.+ |+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 45699999999887554 4445 589999888766543321 235799999998876 5556677779999876
Q ss_pred CCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----------ecCceEEEEe
Q 003271 628 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----------KSGATQMRFQ 689 (835)
Q Consensus 628 t~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----------~~~i~~l~fs 689 (835)
+... ..+.. ....|.++...+++. +..|+.++-|..||..++...... ...+.+++..
T Consensus 339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d 414 (795)
T 4a2l_A 339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD 414 (795)
T ss_dssp GGSS--EEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred cccc--eEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence 5442 22211 235699999888765 345777778999998876554321 1236677777
Q ss_pred cCCCEEEEEEcCCcEEEEECCCCeEEEEEc----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec-
Q 003271 690 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC- 764 (835)
Q Consensus 690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~----~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~- 764 (835)
+++..|.+|+.++.|.+||..+++...... .....|.++...++|.+.+++. +-|.+||..++ .. ..+..
T Consensus 415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~-~~~~~~ 489 (795)
T 4a2l_A 415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SF-TTIEKE 489 (795)
T ss_dssp TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EE-EECCBC
T ss_pred CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eE-EEcccc
Confidence 776657788888889999998876544322 1345799999999998777665 55889998765 22 22221
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec-------cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 765 ------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 765 ------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-------~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
....|.++...+++. |.+++. +.|.+||..+++. .+. .....|.+|...++|.+.++.. +| |
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l 564 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-F 564 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-E
T ss_pred ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-c
Confidence 235788999988887 555555 6689999887766 332 1235689999988888666443 34 4
Q ss_pred EEe
Q 003271 832 KIW 834 (835)
Q Consensus 832 ~IW 834 (835)
..|
T Consensus 565 ~~~ 567 (795)
T 4a2l_A 565 YCF 567 (795)
T ss_dssp EEE
T ss_pred eeE
Confidence 444
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.87 E-value=3.4e-06 Score=102.72 Aligned_cols=264 Identities=8% Similarity=0.087 Sum_probs=176.7
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-------h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
...|.++...+++.+.+ |+.++-|.+||..+++....... ....|.++...+++.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 46799999888886544 55555599999888765543322 135699999998887554 4455 48899987
Q ss_pred CCCceeEEee--------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---------ecCceEEEEec
Q 003271 628 NPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---------KSGATQMRFQP 690 (835)
Q Consensus 628 t~~~~~~~~~--------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---------~~~i~~l~fsp 690 (835)
+... ..+. -....|.++...++|. +..|+.++-|.+|+..+....... ...+.++....
T Consensus 291 ~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 291 TDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 6542 2221 1235799999988876 445666778999987654332211 12366777777
Q ss_pred CCCEEEEEEcCCcEEEEECCCCeEEEEEcC--------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271 691 RLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 761 (835)
Q Consensus 691 ~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~--------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~ 761 (835)
++ .+.+|+.++.|..||..++........ ....|.+++..++|.+|..|+ ++-|.+||..++ .. ..
T Consensus 367 ~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~---~~-~~ 441 (795)
T 4a2l_A 367 DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG---QV-EN 441 (795)
T ss_dssp TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC---CE-EE
T ss_pred CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC---cE-EE
Confidence 64 466788888899999987765443211 245799999999999444455 678999998876 22 22
Q ss_pred ee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCC
Q 003271 762 LS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 762 l~-----~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-------h~~~V~~la~spdg~~LaSgs~DG 829 (835)
+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+... +|
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G 518 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG 518 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred eecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence 22 2345788999888887 555555 569999998877664432 235789999998888666543 44
Q ss_pred cEEEe
Q 003271 830 CVKIW 834 (835)
Q Consensus 830 ~V~IW 834 (835)
|.+|
T Consensus 519 -l~~~ 522 (795)
T 4a2l_A 519 -LSVF 522 (795)
T ss_dssp -EEEE
T ss_pred -eEEE
Confidence 5554
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.84 E-value=4.5e-07 Score=106.69 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=164.9
Q ss_pred CCEEEEEeC-CCeEEEEEc-CCCeEEEEeccCCCC-----------eEEEEECCCCCE----EEEEECCCeEEEEecCCC
Q 003271 567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 629 (835)
Q Consensus 567 g~~Lasgs~-Dg~I~VWd~-~t~~~i~~l~~h~~~-----------V~sv~fspdg~~----Latgs~Dg~I~IWDl~t~ 629 (835)
+..|++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666776 889999999 899998777543211 123455443334 888889999999999998
Q ss_pred CceeEEeecC-C--CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC--c---------------
Q 003271 630 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG--A--------------- 683 (835)
Q Consensus 630 ~~~~~~~~~h-~--~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~--i--------------- 683 (835)
+.+.+.-... . ..+.+ ..+. + ..+++.++ .++.|+.+|.++++.+..+... .
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8644332211 0 01111 1111 2 33443332 3799999999999988766532 1
Q ss_pred ------------------------eEEEEecCCCEEEEEEcC----------------CcEEEEECCCCeEEEEEcCCCC
Q 003271 684 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN 723 (835)
Q Consensus 684 ------------------------~~l~fsp~~~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~h~~ 723 (835)
...++.+..+.+++++.+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 134677788888888765 3799999999999888764221
Q ss_pred ----------CeEEEEEc-CCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-------------CCce------
Q 003271 724 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKF------ 769 (835)
Q Consensus 724 ----------~I~sl~fs-pdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-------------~~~V------ 769 (835)
++. +... .+| ..++.++ +|.|+++|..++ +.+...... ..++
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG---ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC---CEeecccccCCcccccccccCCCceeeccccC
Confidence 121 2222 567 4666676 999999999988 444333211 0111
Q ss_pred --------------------EEEEEeCCCCEEEEEE---------------------------------------cCCeE
Q 003271 770 --------------------HSCVFHPTFPSLLVIG---------------------------------------CYETL 790 (835)
Q Consensus 770 --------------------~sv~fspdg~~L~sgs---------------------------------------~dg~I 790 (835)
..++++|+...+++.. ..+.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 2356777666555532 24689
Q ss_pred EEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 791 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 791 ~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
..||+.+++.+-...+...+..-.+...+.+|+.++.||.|+.||
T Consensus 456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999999873322222222222334567788899999999876
No 247
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=3.4e-07 Score=95.47 Aligned_cols=192 Identities=12% Similarity=0.120 Sum_probs=137.8
Q ss_pred eEEEEeccCCC--CeEEEEECCCCCEEEEEECCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271 588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (835)
Q Consensus 588 ~~i~~l~~h~~--~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg 663 (835)
+.+.++ .|.. ....+.|+ ++.++.+.+.+| .|+++|+.+++. +..+.-. .......+.++++.+++....++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 455566 3443 45789998 666667777665 899999999885 3433322 23333222334567777777899
Q ss_pred cEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC--C---CCeEEEEEcCCCCEEE
Q 003271 664 EIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--K---NQVHSVCWNTSGEYLA 738 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h--~---~~I~sl~fspdg~~La 738 (835)
.+.+||..+.+.+..+..+.....++++++.++++..++.|.++|..+.+.+..+.-. . ..+..+.|. +|++++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 9999999999999998866555666678888888877889999999998888776532 1 345567776 676555
Q ss_pred EEe-CCeEEEEEcCCCCCcceEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003271 739 SVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 739 sgs-Dg~I~IwDl~t~~~~~~i~~l~~~------------~~~V~sv~fspdg~~L~sgs~d 787 (835)
... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++++..
T Consensus 187 n~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 187 NVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 554 889999999998 555555432 2456899999999988888865
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.82 E-value=2.6e-06 Score=91.85 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=146.3
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-c------------------CCCCeEEEEECCCCCEEEEEE
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSS 616 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~------------------h~~~V~sv~fspdg~~Latgs 616 (835)
....+++|++++++++++..++.|..|+..+++...... . ....+..+++.++...|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678999999878888889999999987765432211 0 013578899997333555565
Q ss_pred CCCeEEEEecCCCCceeEEeec-----CCCCeEEEEEcC-CCCcEEEEEeC-----------------CCcEEEEECCCC
Q 003271 617 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG 673 (835)
Q Consensus 617 ~Dg~I~IWDl~t~~~~~~~~~~-----h~~~V~sl~fsp-~g~~ll~sgs~-----------------Dg~I~iwDl~s~ 673 (835)
..+.|.++|..++.. ..+.. .......+++.+ +|. ++++... ++.|..||..++
T Consensus 99 ~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 556688888775432 22211 113478899999 875 5544322 367999998877
Q ss_pred eeeeEee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEeC-----
Q 003271 674 SCAGVFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD----- 742 (835)
Q Consensus 674 ~~~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspdg~~LasgsD----- 742 (835)
+...... .....++++++++.++++.. .+.|.+|++... ... .+..... ...++++++|+++++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 6543322 34667999999998777754 589999998742 211 1111223 788999999987776643
Q ss_pred ------CeEEEEEcCCCCCcceEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCc
Q 003271 743 ------ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK 799 (835)
Q Consensus 743 ------g~I~IwDl~t~~~~~~i~~l~~~~----~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~ 799 (835)
+.|.++|.. + +.+..+.... ..+..+++. ++ .|++++ ..+.|.++++....
T Consensus 254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence 467777753 3 4444444332 345666663 44 455554 56688888876443
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=7.4e-06 Score=99.55 Aligned_cols=272 Identities=8% Similarity=-0.061 Sum_probs=174.8
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec--------------cCCCCeEEEEECCCCCEEEEEECCCe
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 620 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~--------------~h~~~V~sv~fspdg~~Latgs~Dg~ 620 (835)
...|.++....+|. |..|+..+-|.++|..+........ .....|.++....++. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 5556665678899987765432211 1345799999988876 556666777
Q ss_pred EEEEecCCCCceeEEe--------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------ecCceEE
Q 003271 621 VRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------KSGATQM 686 (835)
Q Consensus 621 I~IWDl~t~~~~~~~~--------~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~~~i~~l 686 (835)
|..|+..+........ ......|.++...+++. + ..|+.++-|.+||..++...... ...+.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-L-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-E-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-E-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 8999887654311111 01235689998888765 3 35565667899998765433211 1236666
Q ss_pred EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-
Q 003271 687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 763 (835)
Q Consensus 687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~- 763 (835)
...+++ .|.+++.++.|..||..+++...... .....|.++...++|.+.++.. +-|.+||..++.. ..+....
T Consensus 413 ~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 666654 56667877889999998776543221 1346799999988887666554 6689999877532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc----CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 764 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 764 --~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~----h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.....|.++...+++. |.+++.++.|..||..+++...+.. ....|.+|...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1136788999888887 6666665568889988777665432 23568899988888766544 466546554
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.78 E-value=3.7e-06 Score=90.10 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=143.5
Q ss_pred CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-CC-
Q 003271 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NS- 663 (835)
Q Consensus 586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~-Dg- 663 (835)
..+.+..+... .....++|+++++++++-..++.|..||..... ...+ .....+.++++.++++ ++++... ++
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~ 95 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSI 95 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcc
Confidence 34455555433 567899999999877776678999999987532 2222 2345688999999987 5444432 22
Q ss_pred cEEEEECCCCeeeeEeecC----ceEEEEecCCCEEEEEE-cCCcEEEEECCCCeE-EEEEc---------CCCCCeEEE
Q 003271 664 EIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSV 728 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~-i~~l~---------~h~~~I~sl 728 (835)
.|..+|..+++........ ...+++.+ ++.++++. .++.|+++|...+.. +.... ..-.....+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 4777887777654333211 23344444 45555555 478999999876532 21111 111234555
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCC-CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE---
Q 003271 729 CWNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--- 802 (835)
Q Consensus 729 ~fspdg~~Lasgs--Dg~I~IwDl~t-~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~--- 802 (835)
++++.+|+.+. .+.|.+|++.. +.. .....+.. ......++++++|.++++....+.|.+||.. ++...
T Consensus 175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~ 249 (306)
T 2p4o_A 175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ 249 (306)
T ss_dssp --EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred --CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence 78888777766 77999999875 221 11111111 1345678999999865555557799999975 55532
Q ss_pred eccCCCCeeEEEEe---CCCCEEEEEEC
Q 003271 803 LSAHDKLVSSLAAS---TVNGMVASASH 827 (835)
Q Consensus 803 l~~h~~~V~~la~s---pdg~~LaSgs~ 827 (835)
+......+++++|. ++++.|+.++.
T Consensus 250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 250 AEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cccccCCceEEEEecccCCCCEEEEECC
Confidence 22233568999998 88776666554
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.77 E-value=2.9e-06 Score=91.42 Aligned_cols=230 Identities=9% Similarity=0.008 Sum_probs=144.2
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec--------------------CCCCeEEEEEcCCCCcEEE
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC 657 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~--------------------h~~~V~sl~fsp~g~~ll~ 657 (835)
....+++|.+++++++++..++.|..||..++.. ..+.. ....+..+++.+++..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3456788999998888888899999999876543 22211 1135788999973344554
Q ss_pred EEeCCCcEEEEECCCCeeeeEe--e-----cCceEEEEec-CCCEEEEEEc-----------------CCcEEEEECCCC
Q 003271 658 SCDNNSEIRYWSINNGSCAGVF--K-----SGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ 712 (835)
Q Consensus 658 sgs~Dg~I~iwDl~s~~~~~~~--~-----~~i~~l~fsp-~~~~ll~~s~-----------------dg~I~IwDl~t~ 712 (835)
++..+.|..+|..+++..... . .....+++.+ ++..+++-.. ++.|..||..++
T Consensus 97 -~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 -VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp -EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred -EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 444455888998765432111 1 1256789999 7765544322 267899998877
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 003271 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---- 786 (835)
Q Consensus 713 ~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~---- 786 (835)
+....... ......|+|++++++|+.+. .+.|.+|++....... ...+..... ...+++.++|.++++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 64433221 23346799999999776664 6899999987532111 111111223 788999999985555544
Q ss_pred ------CCeEEEEEcCCCcEE-EeccC----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 787 ------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 787 ------dg~I~IwDl~~~~~~-~l~~h----~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++...++.|.+++
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 3578888875 5544 33322 245777777 3566666665677777663
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=1.8e-06 Score=90.86 Aligned_cols=201 Identities=7% Similarity=0.046 Sum_probs=138.4
Q ss_pred eeEEEEEecCCCC--CEEEEEEeCCCCEEEEEeC--CCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEE-C
Q 003271 544 TFTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSS-A 617 (835)
Q Consensus 544 ~~~~i~~l~gH~~--~V~sl~fSpdg~~Lasgs~--Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs-~ 617 (835)
++..+..++ |.. ....+.|++|+.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. +..|+.+. .
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 344555553 443 3689999998755555443 5799999999999998875322 223355554 44555554 5
Q ss_pred CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--------ceEEEEe
Q 003271 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--------ATQMRFQ 689 (835)
Q Consensus 618 Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--------i~~l~fs 689 (835)
++.|.++|..+.+. +..+...... ...++++++.++++. .++.|.++|..+.+.+..+..+ ...+.|.
T Consensus 85 ~~~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp CSEEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 78999999998764 4445322112 233555777777665 5889999999998888776522 4466777
Q ss_pred cCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCC-------------CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003271 690 PRLGRILAAAI-ENYISILDVETQVCRLKLQGH-------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 753 (835)
Q Consensus 690 p~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h-------------~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~ 753 (835)
+ +.+++... ++.|.+.|..+++.+..+.-. ......|+|+|+++.|++++ .+.|.+.++...
T Consensus 161 -d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 -N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 4 46666664 689999999999998877531 13568999999987666665 778888887654
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.74 E-value=8.8e-07 Score=92.43 Aligned_cols=191 Identities=9% Similarity=0.047 Sum_probs=137.1
Q ss_pred eEEEEeccCC--CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (835)
Q Consensus 588 ~~i~~l~~h~--~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I 665 (835)
+.+.++ .|. .....+.|+ ++.++++.+.+|.|+++|+.+++..... ......-..+++. ++.+++....++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEE
Confidence 445555 343 345788887 4566777778889999999998864443 3222222345554 55677778789999
Q ss_pred EEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC--CC---CCeEEEEEcCCCCEEEEE
Q 003271 666 RYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~---~~I~sl~fspdg~~Lasg 740 (835)
.+||..+.+.+..+........+.++++.|+++..++.|.++|..+.+.+..+.- +. ..+..+.|. +|++++..
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 9999999999999886544455567788898888889999999999988877653 21 245677776 77655555
Q ss_pred e-CCeEEEEEcCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003271 741 S-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 741 s-Dg~I~IwDl~t~~~~~~i~~l~~-------------~~~~V~sv~fspdg~~L~sgs~d 787 (835)
. ++.|.+.|..++ +.+..+.. .....+.|+|+|+++.|++++..
T Consensus 198 w~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 198 WHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp TTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred CCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 4 789999999998 55555442 12467899999988877777654
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.73 E-value=1.3e-05 Score=85.72 Aligned_cols=236 Identities=9% Similarity=0.025 Sum_probs=146.6
Q ss_pred eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-C-eE
Q 003271 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TV 621 (835)
Q Consensus 544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-g-~I 621 (835)
..+.+..+..+ ....+++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++.... + .|
T Consensus 21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence 34455555543 45889999999997777768899999998764 333332 23568899999999866655433 2 46
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEe----------e--cCceEEEE
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF----------K--SGATQMRF 688 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~----------~--~~i~~l~f 688 (835)
..+|..+++.....-.........+++.+. ..++++...++.|+++|...++. +... . .....+
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 667766655321111112223445555544 44555555688999999876531 1100 0 012333
Q ss_pred ecCCCEEEEEEc-CCcEEEEECCC-CeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee
Q 003271 689 QPRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 763 (835)
Q Consensus 689 sp~~~~ll~~s~-dg~I~IwDl~t-~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~ 763 (835)
+++++.++++.. .+.|..||+.. +.. ...+. .......++++++|+++++.. .+.|.+||.. +. ...+..+.
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~ 251 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TTIIAQAE 251 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EEEEECGG
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EEEEeecc
Confidence 788888877765 57899999874 321 11111 113456789999998776666 7799999864 31 11122333
Q ss_pred cCCCceEEEEEe---CCCCEEEEEEcCC
Q 003271 764 CTGNKFHSCVFH---PTFPSLLVIGCYE 788 (835)
Q Consensus 764 ~~~~~V~sv~fs---pdg~~L~sgs~dg 788 (835)
.......+|+|. |++..|++++..+
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 334678999998 8988888887654
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.72 E-value=2e-06 Score=88.90 Aligned_cols=191 Identities=15% Similarity=0.129 Sum_probs=136.9
Q ss_pred eEEEEeccCC--CCeEEEEECCCCCEEEEEECC--CeEEEEecCCCCceeEEeecCCC-CeEEEEEcCCCCcEEEEEeCC
Q 003271 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 588 ~~i~~l~~h~--~~V~sv~fspdg~~Latgs~D--g~I~IWDl~t~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~sgs~D 662 (835)
+.+.++ .|. ..+..+.|+. +.++.+.+.+ ..|+++|+.+++. +....-... .-..+++. ++.++.....+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 455666 454 3567899986 4555565554 4899999999885 343332221 22334444 56677777889
Q ss_pred CcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----CCeEEEEEcCCCCEE
Q 003271 663 SEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYL 737 (835)
Q Consensus 663 g~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~fspdg~~L 737 (835)
+.+.+||..+.+.+..+..+.....+.++++.|+++..++.|.++|..+.+.+..+.-.. ..+..+.|. +|+++
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 999999999999999998665556667788888888888999999999998887765321 345667765 67666
Q ss_pred EEEe-CCeEEEEEcCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003271 738 ASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 787 (835)
Q Consensus 738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~-------------~~~~V~sv~fspdg~~L~sgs~d 787 (835)
+... ++.|.+.|..++ +.+..+.. .....+.++++|++..|++++..
T Consensus 164 anvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 5554 789999999998 55555442 12457899999998888888764
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=6.9e-06 Score=96.49 Aligned_cols=262 Identities=9% Similarity=0.014 Sum_probs=160.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCe---------EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V---------~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~ 638 (835)
..|++++.++.|..+|..+++.+..+....... ..+++ .+..|++++.|+.|..+|..+++...+.-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355555654559999999999987775432210 11222 3457888889999999999998864333221
Q ss_pred C-C--CCeE-E-EEEcC--CCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCc----------------------
Q 003271 639 H-S--TTVM-S-LDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGA---------------------- 683 (835)
Q Consensus 639 h-~--~~V~-s-l~fsp--~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i---------------------- 683 (835)
. . ..+. . +.... +++.+++++. .++.|+.+|..+++.+.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 0 0111 1 11111 2232444543 37899999999998876554210
Q ss_pred ----------------------eEEEEecCCCEEEEEEc--------------------C----CcEEEEECCCCeEEEE
Q 003271 684 ----------------------TQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 717 (835)
Q Consensus 684 ----------------------~~l~fsp~~~~ll~~s~--------------------d----g~I~IwDl~t~~~i~~ 717 (835)
..+++++..+.+++++. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 12466777788888774 2 5799999999999988
Q ss_pred EcC--CC--------CCeEEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-------------Cc-
Q 003271 718 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 768 (835)
Q Consensus 718 l~~--h~--------~~I~sl~fs-pdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-------------~~- 768 (835)
+.. |. .++. +... .+|+ +|+.++ +|.|+++|..++ +.+..+.... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG---KLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC---CEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC---CEecccccccCccccccccccCCCEe
Confidence 753 32 1121 2221 4674 677777 999999999988 3443332211 00
Q ss_pred -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 003271 769 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 785 (835)
Q Consensus 769 -------------------------------V~sv~fspdg~~L~sgs-------------------------------- 785 (835)
...++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01345666665565543
Q ss_pred -cCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 786 -CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 786 -~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
.++.|..||+.+++.+-...+...+..-.+...+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 25789999999999872222222333222233467888899999999886
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.72 E-value=2.3e-07 Score=110.68 Aligned_cols=263 Identities=9% Similarity=0.042 Sum_probs=154.6
Q ss_pred EEEEeC-CCCEEEEEeCCC-----------eEEEEEcCCCeE--EEEec-cCCCCeEEEEECCCCCEEEEEEC-CCeEEE
Q 003271 560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTV--KSTLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV 623 (835)
Q Consensus 560 sl~fSp-dg~~Lasgs~Dg-----------~I~VWd~~t~~~--i~~l~-~h~~~V~sv~fspdg~~Latgs~-Dg~I~I 623 (835)
++++.+ ++++++.|+.+. .+.+||..+.+. +..+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888889887643 588999887643 22222 23344456788889999999984 458999
Q ss_pred EecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEe-CC-----CcEEEEECCCCeeeeEe-----e--cCceEEEEe
Q 003271 624 WDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----K--SGATQMRFQ 689 (835)
Q Consensus 624 WDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~sgs-~D-----g~I~iwDl~s~~~~~~~-----~--~~i~~l~fs 689 (835)
||..+...... -..+. ..-.++++.++++ +++.|+ .+ ..+.+||..+.+....- . .......+.
T Consensus 270 yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 270 YDSSSDSWIPG-PDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEGGGTEEEEC-CCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred ecCcCCceeEC-CCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 99987653211 11111 1223455666766 565666 34 57999999887654321 0 000001122
Q ss_pred cCCCEEEEEEcC---------CcEEEEECCCCeEEEEEcCCC---------CCeEEEEEc-CCCCEEEEEe-CC------
Q 003271 690 PRLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWN-TSGEYLASVS-DE------ 743 (835)
Q Consensus 690 p~~~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~---------~~I~sl~fs-pdg~~Lasgs-Dg------ 743 (835)
.++..++.++.+ ..+..||..+.........+. ..-.++.|. .+++++++|+ ++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 334444555444 356788888765433222111 123445554 3677777766 32
Q ss_pred -----eEEEEEcCCCCCcceEEEe--ecCC-CceEEEEEeCCCCEEEEEEcC-----------CeEEEEEcCCCcEEEec
Q 003271 744 -----LVRVWSIGSGSKGECIHEL--SCTG-NKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLS 804 (835)
Q Consensus 744 -----~I~IwDl~t~~~~~~i~~l--~~~~-~~V~sv~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~~l~ 804 (835)
.|.+||..+. ...... .... ....+++..|+++.+++|+.+ ..+.+||..+.+...+.
T Consensus 428 ~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 504 (656)
T 1k3i_A 428 TTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN 504 (656)
T ss_dssp CCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred CCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence 6778887665 222221 1122 223455677899998888854 46899999888766433
Q ss_pred c---CCCCeeEEEEeCCCCEEEEEEC
Q 003271 805 A---HDKLVSSLAASTVNGMVASASH 827 (835)
Q Consensus 805 ~---h~~~V~~la~spdg~~LaSgs~ 827 (835)
. ......+..+.+++++++.|+.
T Consensus 505 ~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 505 PNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCccccccHhhcCCCcEEEecCCC
Confidence 2 1222334556689999999985
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=1.4e-06 Score=104.24 Aligned_cols=253 Identities=13% Similarity=0.135 Sum_probs=157.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEEC------CCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~s-v~fspdg~~Latgs~------Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.|+.|+.+|.++++.+..+.... ..+.+ ..+. ++ .+++++. +|.|+.||..+++.....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999987775421 11111 1111 33 4555433 589999999998864333
Q ss_pred eec--CC----------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 003271 636 FTG--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 666 (835)
Q Consensus 636 ~~~--h~----------------------------~~V~sl~fsp~g~~ll~sgs~Dg-------------------~I~ 666 (835)
... .. .....++++++.. +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 00 1112467888765 555565554 499
Q ss_pred EEECCCCeeeeEeecC------------ceEEEEecCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCC---------
Q 003271 667 YWSINNGSCAGVFKSG------------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK--------- 722 (835)
Q Consensus 667 iwDl~s~~~~~~~~~~------------i~~l~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--------- 722 (835)
.+|.++++.+..+... .....+..++. .+++++.+|.++++|.++++.+..+....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999998777532 11122233554 57888899999999999999885433211
Q ss_pred ---CCe------------------------EEEEEcCCCCEEEEE-----------------------------------
Q 003271 723 ---NQV------------------------HSVCWNTSGEYLASV----------------------------------- 740 (835)
Q Consensus 723 ---~~I------------------------~sl~fspdg~~Lasg----------------------------------- 740 (835)
.++ ..++++|+..+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 000 125677776655541
Q ss_pred -e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC-eeEEEEe
Q 003271 741 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAAS 816 (835)
Q Consensus 741 -s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~-V~~la~s 816 (835)
. +|.|+.||+.++ +.+-..... ..+....+...+..+++++.++.|++||.++++.+ .+...... -.-+.+.
T Consensus 434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 1 378999999988 554444432 23333445556778999999999999999999988 33322211 1234445
Q ss_pred CCCC-EEEEEE
Q 003271 817 TVNG-MVASAS 826 (835)
Q Consensus 817 pdg~-~LaSgs 826 (835)
.+|+ +++.++
T Consensus 510 ~~G~~yva~~~ 520 (668)
T 1kv9_A 510 LAGRQYVAIMA 520 (668)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 5676 444443
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=1.9e-05 Score=95.88 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=172.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~ 627 (835)
...|.++...++|.+.+ |+.+ -|.+||..+.+...... .....|.++....++. |..|+..+-|.++|..
T Consensus 210 ~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 35699999998887655 4444 69999988766543221 1245699999988775 5556664568889987
Q ss_pred CCCceeEEe-------------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------------ecC
Q 003271 628 NPDYSLRTF-------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------------KSG 682 (835)
Q Consensus 628 t~~~~~~~~-------------~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------------~~~ 682 (835)
+........ .-....|.++....+|. +..|+.++-|..|+..+....... ...
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV 364 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence 654311111 11345799999888875 445666778899998765433221 123
Q ss_pred ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE---cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceE
Q 003271 683 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 759 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i 759 (835)
+.+++...+ +.|.+|+.++.|.+||..++...... ......|.+++..++|.+.+...++-|.+||..++ . +
T Consensus 365 v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~ 439 (781)
T 3v9f_A 365 VSSVCDDGQ-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK---K-F 439 (781)
T ss_dssp EEEEEECTT-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC---E-E
T ss_pred eEEEEEcCC-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC---c-E
Confidence 666776665 45667787888999998765433211 12346799999988888777544677999988765 2 2
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-C-----CCCeeEEEEeCCCCEEEEEECCCc
Q 003271 760 HELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-H-----DKLVSSLAASTVNGMVASASHDKC 830 (835)
Q Consensus 760 ~~l~---~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-h-----~~~V~~la~spdg~~LaSgs~DG~ 830 (835)
..+. .....|.++...+++. |.+++. +.|.+||..+++...+.. . ...|.++...++|.+.+....+|
T Consensus 440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G- 516 (781)
T 3v9f_A 440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG- 516 (781)
T ss_dssp EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-
T ss_pred EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-
Confidence 2222 2346788888888776 666666 679999988876543321 1 36789999988887665443344
Q ss_pred EEEeC
Q 003271 831 VKIWK 835 (835)
Q Consensus 831 V~IWd 835 (835)
|..||
T Consensus 517 l~~~~ 521 (781)
T 3v9f_A 517 VGIYT 521 (781)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 44443
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.66 E-value=7.2e-05 Score=80.61 Aligned_cols=226 Identities=8% Similarity=-0.037 Sum_probs=146.0
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCC---CceeEEeecCCCCeE
Q 003271 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 644 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~---~~~~~~~~~h~~~V~ 644 (835)
+|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 444444 3568999998876655554 34567899999876555554 45689999998761 221222322234568
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEc
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 719 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~ 719 (835)
.+++++.+..++++-...+.|.++++........+. .....++++|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899988767787777778899999987544333333 236789999988888887764 688888886443332233
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcC
Q 003271 720 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 796 (835)
Q Consensus 720 ~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~ 796 (835)
..-.....|++++++..|+.+. .+.|.++|+.... ...+............+++.. ..|+.+. ..+.|..+|..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEEEEeCC
Confidence 3345678999999887777766 6799999987532 222322222234567777753 3555555 45689999976
Q ss_pred CCc
Q 003271 797 ENK 799 (835)
Q Consensus 797 ~~~ 799 (835)
+++
T Consensus 238 ~g~ 240 (316)
T 1ijq_A 238 TGS 240 (316)
T ss_dssp TCC
T ss_pred CCc
Confidence 655
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.66 E-value=2.3e-05 Score=85.82 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=153.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeE
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~ 634 (835)
+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|..+++..... ..
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~ 109 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE 109 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eE
Confidence 445666666644 454443 35688888877665555543 3457899999765555554 4578899999886543 22
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEEC
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDV 709 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl 709 (835)
...........+++.+.+..++++-...+.|.++++........+. .....++++|.++.++.+... +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 2332334567899998777788787778899999987554333332 236789999988888877653 67888888
Q ss_pred CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-
Q 003271 710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC- 786 (835)
Q Consensus 710 ~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~- 786 (835)
........+...-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+..
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~ 264 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWH 264 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CC-EEEEecCC
Confidence 75433322222345678999998877777766 6799999987542 122222334566778873 33 5555554
Q ss_pred CCeEEEEEcCCCc
Q 003271 787 YETLELWNMTENK 799 (835)
Q Consensus 787 dg~I~IwDl~~~~ 799 (835)
.+.|..+|..+++
T Consensus 265 ~~~V~~~~~~~G~ 277 (349)
T 3v64_C 265 TKSINSANKFTGK 277 (349)
T ss_dssp TTEEEEEETTTCC
T ss_pred CCeEEEEEccCCC
Confidence 5688888855554
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=4.8e-06 Score=97.61 Aligned_cols=252 Identities=9% Similarity=0.018 Sum_probs=152.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEEC------CCeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~s-v~fspdg~~Latgs~------Dg~I~IWDl~t~~~~~~~ 635 (835)
+..|++++.|+.|..+|..+++.+..+.... ..+.+ .... ++ .+++++. ++.|..+|..+++...+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 4578888889999999999999987664321 01211 1111 33 5555554 789999999998863332
Q ss_pred eecCCC-------------------------------------CeEEEEEcCCCCcEEEEEeC-----------C----C
Q 003271 636 FTGHST-------------------------------------TVMSLDFHPSKEDLLCSCDN-----------N----S 663 (835)
Q Consensus 636 ~~~h~~-------------------------------------~V~sl~fsp~g~~ll~sgs~-----------D----g 663 (835)
...... ....+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00235566665544433321 1 3
Q ss_pred cEEEEECCCCeeeeEeecC---------ceE-E--EEecCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCC------
Q 003271 664 EIRYWSINNGSCAGVFKSG---------ATQ-M--RFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 722 (835)
Q Consensus 664 ~I~iwDl~s~~~~~~~~~~---------i~~-l--~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------ 722 (835)
.|..+|.++++.+..+... ... + ....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 5999999999988776521 111 1 1223553 46677788999999999999887664221
Q ss_pred -------CCe--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 003271 723 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 741 (835)
Q Consensus 723 -------~~I--------------------------~sl~fspdg~~Lasgs---------------------------- 741 (835)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2356777776666543
Q ss_pred ----------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC-CC
Q 003271 742 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL 809 (835)
Q Consensus 742 ----------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~~ 809 (835)
++.|..||+.++ +.+-++... ..+....+...+..+++++.|+.|++||.++++++ .+.... ..
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 368889998887 444444322 22222333345667888999999999999999988 332221 11
Q ss_pred eeEEEEeCCCCEEEE
Q 003271 810 VSSLAASTVNGMVAS 824 (835)
Q Consensus 810 V~~la~spdg~~LaS 824 (835)
-.-+.+..+++.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 122345567774443
No 263
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=3.7e-06 Score=87.71 Aligned_cols=194 Identities=14% Similarity=0.172 Sum_probs=131.3
Q ss_pred eEEEEEecCCCCC--EEEEEEeCCCCEEEEEeCCC--eEEEEEcCCCeEEEEeccCCCC-eEEEEECCCCCEEEEEE-CC
Q 003271 545 FTEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSS-AD 618 (835)
Q Consensus 545 ~~~i~~l~gH~~~--V~sl~fSpdg~~Lasgs~Dg--~I~VWd~~t~~~i~~l~~h~~~-V~sv~fspdg~~Latgs-~D 618 (835)
+..+..+ .|... ...+.|+ ++.++.+++.+| .|+++|+++++.+..+...... -..+++ ++..|+... .+
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~ 106 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeC
Confidence 4445555 44433 4788998 677777777766 8999999999999887643322 123444 344555554 47
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--------ceEEEEec
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--------ATQMRFQP 690 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--------i~~l~fsp 690 (835)
+.+.+||..+.+. +..+.... .-..++ +++..++++- .++.|.++|..+.+.+..+... +..+.|.
T Consensus 107 ~~v~v~D~~t~~~-~~ti~~~~-eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 107 GLGFVWNIRNLRQ-VRSFNYDG-EGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp SEEEEEETTTCCE-EEEEECSS-CCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECccCcE-EEEEECCC-CceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 8999999998775 55554322 223343 5566666554 4788999999999888776531 2346665
Q ss_pred CCCEEEEEE-cCCcEEEEECCCCeEEEEEcCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 003271 691 RLGRILAAA-IENYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWS 749 (835)
Q Consensus 691 ~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h------------~~~I~sl~fspdg~~LasgsDg~I~IwD 749 (835)
+ +.+++.. .++.|.+.|.++++.+..+.-. ......|+|+|+++.|+..+..-=++|.
T Consensus 181 ~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e 251 (262)
T 3nol_A 181 D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE 251 (262)
T ss_dssp T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence 4 5677766 4789999999999998877531 2356899999998888777755334443
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.59 E-value=1.1e-05 Score=94.73 Aligned_cols=249 Identities=10% Similarity=0.003 Sum_probs=149.1
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEE------CCCeEEEEecCCCCceeEEeec
Q 003271 570 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~s-v~fspdg~~Latgs------~Dg~I~IWDl~t~~~~~~~~~~ 638 (835)
|++++.|+.|..+|..+++.+....... ..+.+ ..+. ++ .|++++ .++.|+.+|..+++...+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999987654322 01221 1111 34 455554 3899999999998864333222
Q ss_pred CCC------------------------------------Ce-EEEEEcCCCCcEEEEEeCC----------------CcE
Q 003271 639 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 665 (835)
Q Consensus 639 h~~------------------------------------~V-~sl~fsp~g~~ll~sgs~D----------------g~I 665 (835)
... .+ ..+++.+... +++.+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceE
Confidence 110 00 1345666655 44444433 489
Q ss_pred EEEECCCCeeeeEeecCc----------eEEEEe---cCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCC-------
Q 003271 666 RYWSINNGSCAGVFKSGA----------TQMRFQ---PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 722 (835)
Q Consensus 666 ~iwDl~s~~~~~~~~~~i----------~~l~fs---p~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------- 722 (835)
..+|.++++.+..+.... ..+.+. .++ ..++.++.+|.++++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999987765321 112222 455 356667789999999999999887654211
Q ss_pred ------CCe--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 003271 723 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 741 (835)
Q Consensus 723 ------~~I--------------------------~sl~fspdg~~Lasgs----------------------------- 741 (835)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1345666655554421
Q ss_pred -----------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC-C
Q 003271 742 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K 808 (835)
Q Consensus 742 -----------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~ 808 (835)
+|.|..||+.++ +.+-..... ..+..-.+...+..+++++.|+.|+.||.++++.+ .+.... .
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 257788888777 444333221 11211122335667888999999999999999988 333222 1
Q ss_pred CeeEEEEeCCCC-EEEEE
Q 003271 809 LVSSLAASTVNG-MVASA 825 (835)
Q Consensus 809 ~V~~la~spdg~-~LaSg 825 (835)
...-+.+..+|+ +|++.
T Consensus 517 ~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEE
Confidence 222355566777 44433
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.59 E-value=2.9e-05 Score=86.31 Aligned_cols=234 Identities=9% Similarity=-0.002 Sum_probs=152.0
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeEEe
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~~~ 636 (835)
..|.+..+. .+|+.+. ...|+.+++........+.. ...+..++|++....|+.+ ...+.|..+++..... ...+
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 345555553 3554443 46788889877665544443 3457899999765555544 4578899999886542 2223
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCC
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVET 711 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t 711 (835)
.........+++++.+..++++-...+.|.++++........+. .....++++|.++.++.+... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 32334567788988777788777778899999987544333333 236789999988888877654 6788888875
Q ss_pred CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCC
Q 003271 712 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 788 (835)
Q Consensus 712 ~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg 788 (835)
..........-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence 443333333445678999998777777666 6789999986532 222223334556778883 33 455554 456
Q ss_pred eEEEEEcCCCcE
Q 003271 789 TLELWNMTENKT 800 (835)
Q Consensus 789 ~I~IwDl~~~~~ 800 (835)
.|..+|..+++.
T Consensus 310 ~V~~~~~~~G~~ 321 (386)
T 3v65_B 310 SINSANKFTGKN 321 (386)
T ss_dssp EEEEEETTTCCS
T ss_pred eEEEEECCCCcc
Confidence 899998655543
No 266
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=3.5e-06 Score=102.15 Aligned_cols=236 Identities=10% Similarity=0.049 Sum_probs=134.0
Q ss_pred CEEEEEEe-CCCCEEEEEeC-CC----eEEEEEcCCC-eEEE-EeccCCCCeEEEEECCCCCEEEEEECC-----CeEEE
Q 003271 557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 623 (835)
Q Consensus 557 ~V~sl~fS-pdg~~Lasgs~-Dg----~I~VWd~~t~-~~i~-~l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~I 623 (835)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886543 22 5999999998 6321 111 123468899999888877765 36888
Q ss_pred EecCCCCce-eEEee-cCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEECCCC--ee-eeEeec----CceEEEEecCC
Q 003271 624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC-AGVFKS----GATQMRFQPRL 692 (835)
Q Consensus 624 WDl~t~~~~-~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~--Dg~I~iwDl~s~--~~-~~~~~~----~i~~l~fsp~~ 692 (835)
+++.++... ...+. ........+.|+|+++.++++... ...|+++|+.++ +. +..+.. ....+.|+ .+
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GT 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eC
Confidence 888775421 22332 233456788999999988877643 347888999875 22 022221 12233332 26
Q ss_pred CEEEEEEcC-----CcEEEEECCCCeEEEE-EcCCCC--CeEEEEEcCCCCEEEEE-e-CC--eEEEEEc-------CCC
Q 003271 693 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG 753 (835)
Q Consensus 693 ~~ll~~s~d-----g~I~IwDl~t~~~i~~-l~~h~~--~I~sl~fspdg~~Lasg-s-Dg--~I~IwDl-------~t~ 753 (835)
+.|+..+.. ..|..+|+.+...... +..+.. .+..+.+. +..|+.. . ++ .|.++|+ ..+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 766666543 2677788775211111 222333 34555554 4455444 4 77 4666665 222
Q ss_pred CCcceEEEeecCC-CceEEEEE----eCCCCE-EEEEEcC---CeEEEEEcCCCcEE
Q 003271 754 SKGECIHELSCTG-NKFHSCVF----HPTFPS-LLVIGCY---ETLELWNMTENKTL 801 (835)
Q Consensus 754 ~~~~~i~~l~~~~-~~V~sv~f----spdg~~-L~sgs~d---g~I~IwDl~~~~~~ 801 (835)
..+..+.... ..+..+.+ ++++.. +++.+.. ..|+.+|+.+++..
T Consensus 409 ---~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 ---TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp ---TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred ---ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1023332111 22333322 345544 4444443 37888888877654
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=8.1e-05 Score=81.50 Aligned_cols=227 Identities=9% Similarity=0.036 Sum_probs=147.1
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe
Q 003271 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (835)
Q Consensus 600 V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~ 679 (835)
.+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345454453 344433 345588888875442 3333334568899999887778877777889999999876544433
Q ss_pred e---cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCC
Q 003271 680 K---SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS 752 (835)
Q Consensus 680 ~---~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t 752 (835)
. .....+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+.+. . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 3 23567999988787777665 57899999886544434443445678999999776666655 4 7888888765
Q ss_pred CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271 753 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC 830 (835)
Q Consensus 753 ~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSgs~DG~ 830 (835)
.. ....+.........+++++++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.
T Consensus 192 ~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 192 SG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 42 111112234567899999988888887764 589999988654433 33334567788883 4444555444555
Q ss_pred EEEe
Q 003271 831 VKIW 834 (835)
Q Consensus 831 V~IW 834 (835)
|..+
T Consensus 268 V~~~ 271 (349)
T 3v64_C 268 INSA 271 (349)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.52 E-value=2.1e-05 Score=92.27 Aligned_cols=251 Identities=9% Similarity=0.001 Sum_probs=151.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC----CeE-E-EEECC--CCC-EEEEEE------CCCeEEEEecCCCCc
Q 003271 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-D-VRFSP--SLS-RLATSS------ADRTVRVWDTENPDY 631 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~----~V~-s-v~fsp--dg~-~Latgs------~Dg~I~IWDl~t~~~ 631 (835)
+..|++++.|+.|..+|.++++.+........ .+. . +.... +++ .|++++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45778888999999999999999877643221 111 1 11111 233 566654 378999999998875
Q ss_pred eeEEeecCCC-----------------------------------------CeEEEEEcCCCCcEEEEEe----------
Q 003271 632 SLRTFTGHST-----------------------------------------TVMSLDFHPSKEDLLCSCD---------- 660 (835)
Q Consensus 632 ~~~~~~~h~~-----------------------------------------~V~sl~fsp~g~~ll~sgs---------- 660 (835)
... ...... .-..++++|+...+++..+
T Consensus 197 ~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWM-RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEE-EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Eee-cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 332 221100 0013456666554444332
Q ss_pred --C-------C----CcEEEEECCCCeeeeEeecC----------ceEEEEe---cCCC---EEEEEEcCCcEEEEECCC
Q 003271 661 --N-------N----SEIRYWSINNGSCAGVFKSG----------ATQMRFQ---PRLG---RILAAAIENYISILDVET 711 (835)
Q Consensus 661 --~-------D----g~I~iwDl~s~~~~~~~~~~----------i~~l~fs---p~~~---~ll~~s~dg~I~IwDl~t 711 (835)
. | +.|..+|..+++.+..+... ...+.+. .+++ .+++++.+|.++++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 68999999999998776531 1122222 3553 677788999999999999
Q ss_pred CeEEEEEcCCC--CCe-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 003271 712 QVCRLKLQGHK--NQV-------------------------------------------HSVCWNTSGEYLASVS----- 741 (835)
Q Consensus 712 ~~~i~~l~~h~--~~I-------------------------------------------~sl~fspdg~~Lasgs----- 741 (835)
++.+..+.... ... ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 99887665321 000 1235565544444321
Q ss_pred -----------------------------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271 742 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 792 (835)
Q Consensus 742 -----------------------------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I 792 (835)
+|.|..||+.++ +.+-...... .+....+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 467889999888 4444433221 2222222234667888999999999
Q ss_pred EEcCCCcEE-EeccCCCCee--EEEEeCCCCEEE
Q 003271 793 WNMTENKTL-TLSAHDKLVS--SLAASTVNGMVA 823 (835)
Q Consensus 793 wDl~~~~~~-~l~~h~~~V~--~la~spdg~~La 823 (835)
||.++++.+ .+.. ...+. -+.|..+|+.++
T Consensus 512 ~D~~tG~~lW~~~~-~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 512 FDAKSGKELWKFQT-GSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEE
T ss_pred EECCCCCEEEEecC-CCCcccCceEEEECCEEEE
Confidence 999999988 3332 22232 266667887333
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=2.2e-05 Score=88.59 Aligned_cols=231 Identities=10% Similarity=0.087 Sum_probs=140.3
Q ss_pred CeEEEEECC-CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEECCCC
Q 003271 599 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 673 (835)
Q Consensus 599 ~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg----~I~iwDl~s~ 673 (835)
....|+|+| ++..|+++...+.|+++|+.... +..+.........|+|+++++.++++...++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 457889998 45566666665889999988654 3444445567889999999886776665333 34444433 2
Q ss_pred eee--eEe--ecCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe--CCeE
Q 003271 674 SCA--GVF--KSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 745 (835)
Q Consensus 674 ~~~--~~~--~~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs--Dg~I 745 (835)
... ..+ ......++++|+++.|+++. .++.|..||...+....... +.......++|+|+|++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 221 122 23467788999555566655 46889999998776522222 2234577899999999666665 7799
Q ss_pred EEEEcCCCCC-cceEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEEc-CCeEEEEEcCCCc
Q 003271 746 RVWSIGSGSK-GECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIGC-YETLELWNMTENK 799 (835)
Q Consensus 746 ~IwDl~t~~~-~~~i~~l~~~---------------~~~V~-sv~fs--------pdg~~L~sgs~-dg~I~IwDl~~~~ 799 (835)
.+++...... ...+..+.+. -.... .+++. +++. |+++.. .+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 9988764210 0011122111 11123 45553 2344 555544 56899998 4566
Q ss_pred EEEeccC---------C---------CCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003271 800 TLTLSAH---------D---------KLVSSLAASTV-NGMVASASHDKCVKIW 834 (835)
Q Consensus 800 ~~~l~~h---------~---------~~V~~la~spd-g~~LaSgs~DG~V~IW 834 (835)
...+.+. . .....|+++++ +.++++-....+|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 1 25789999995 5555555556677765
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=8.4e-05 Score=82.54 Aligned_cols=226 Identities=9% Similarity=0.041 Sum_probs=148.7
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee
Q 003271 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (835)
Q Consensus 601 ~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~ 680 (835)
.|.+..+. .+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus 80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSSC-CEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCcccc-ceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 34444443 344443 345688888876543 33333445688999998877788777778899999998765444433
Q ss_pred c---CceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCC
Q 003271 681 S---GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 753 (835)
Q Consensus 681 ~---~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~ 753 (835)
. ....+++++.++.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. . +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 2 3567899988787777665 57888888876544444444446678999999777766665 4 68888887654
Q ss_pred CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
. ..............++|+|++..|+++... +.|+.+|+...... .+.........|++. .+.++++-...+.|
T Consensus 236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 2 222222334567899999988888877664 58999998765443 233334567788883 44455555555666
Q ss_pred EEe
Q 003271 832 KIW 834 (835)
Q Consensus 832 ~IW 834 (835)
..+
T Consensus 312 ~~~ 314 (386)
T 3v65_B 312 NSA 314 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.50 E-value=0.00021 Score=76.97 Aligned_cols=217 Identities=9% Similarity=0.020 Sum_probs=140.8
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEee---cCc
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK---SGA 683 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s----~~~~~~~~---~~i 683 (835)
+|+.+. ...|+..|+.+... ...+ .....+..++|++.+..++++-..++.|..+++.. ......+. ...
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987654 2333 34456889999998777887877789999999876 22222232 235
Q ss_pred eEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceE
Q 003271 684 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 759 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i 759 (835)
..+++++.++.|+++.. .+.|.++|+........+.........++++|.+.+|+.+. . +.|..+++... ...
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---CeE
Confidence 78899987777777654 68899999986544444443445778999998766665555 3 68888887543 111
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 760 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 760 ~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~---~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
......-.....+++++++..|+.+... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1122234567899999988888887754 59999999865443322 223456788885 35555555555666654
No 272
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=1.1e-05 Score=84.14 Aligned_cols=175 Identities=7% Similarity=0.016 Sum_probs=122.0
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-ecCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEc
Q 003271 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ 719 (835)
Q Consensus 642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~ 719 (835)
....|.|+ ++.++++.+.+|.|+++|+.+++.+..+ ........+.+.++.|+... .++.+.+||..+.+.+.++.
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 45788887 3578888888999999999999887765 22233333455566666665 46899999999999999887
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeEEE
Q 003271 720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETLEL 792 (835)
Q Consensus 720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--~~---~~V~sv~fspdg~~L~sgs-~dg~I~I 792 (835)
.... -..++ +++..|+.+. ++.|.++|..+. +.+..+.. .. ..++.+.|. +|. |++.. .++.|.+
T Consensus 134 ~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~v 205 (268)
T 3nok_A 134 YSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLE 205 (268)
T ss_dssp CSSC-CCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEE
T ss_pred CCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEE
Confidence 4322 23444 5677777776 889999999887 44444433 22 234667776 664 66655 4679999
Q ss_pred EEcCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEE
Q 003271 793 WNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 793 wDl~~~~~~~l~~--------------h~~~V~~la~spdg~~LaSgs 826 (835)
.|..+++++.... -.+..+.|+|+|+++.|+..+
T Consensus 206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999873221 124678999999776444444
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.0003 Score=78.43 Aligned_cols=227 Identities=8% Similarity=-0.035 Sum_probs=149.5
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCC---ceeEEeecCCCCeE
Q 003271 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD---YSLRTFTGHSTTVM 644 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~ 644 (835)
+|+.+. ...|+..+++.......+. ....+..|+|++....|+.+. ..+.|+.+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555444 4789999988765554443 445688999998655555554 56889999987521 11233333445678
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEc
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 719 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~ 719 (835)
.|++.+.+..++++-...+.|.+.++........+.. ....++++|.++.|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 8999987677887877788999999986654444432 2678999998888888774 3689999987654443444
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271 720 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 796 (835)
Q Consensus 720 ~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~ 796 (835)
..-.....|++++++..|+.+. .+.|..+|+..... ..+............+++. +..|+.+.. .+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 3446788999998888777776 67999999875422 2222222223445667763 335555554 4589999866
Q ss_pred CCcE
Q 003271 797 ENKT 800 (835)
Q Consensus 797 ~~~~ 800 (835)
+++.
T Consensus 320 ~G~~ 323 (400)
T 3p5b_L 320 TGSD 323 (400)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6643
No 274
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.46 E-value=4.1e-05 Score=79.06 Aligned_cols=176 Identities=10% Similarity=0.067 Sum_probs=121.6
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEE
Q 003271 641 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 715 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i 715 (835)
.....+.|++ ..++.+.+.+| .|+.+|+.+++.+..+..+ .....+...++.++.... ++.+.+||..+.+.+
T Consensus 21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4466899986 45777777654 8999999999998877633 333444445677777664 689999999999999
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCC
Q 003271 716 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYE 788 (835)
Q Consensus 716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~--~---~~V~sv~fspdg~~L~sgs-~dg 788 (835)
.++...... ..++ +++..|+.+. ++.|.++|..+. +.+.++... . ..++.+.|. +|. |++.. .++
T Consensus 99 ~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~ 170 (243)
T 3mbr_X 99 ARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTS 170 (243)
T ss_dssp EEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTT
T ss_pred EEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCC
Confidence 988743322 3555 4566565555 889999999887 444444332 1 344566665 554 55555 567
Q ss_pred eEEEEEcCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEE
Q 003271 789 TLELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 789 ~I~IwDl~~~~~~~l~~--------------h~~~V~~la~spdg~~LaSgs 826 (835)
.|.+.|..+++++.... -.+..+.|+++|+++.|+..+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999873211 124678999999877665554
No 275
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.45 E-value=7.8e-05 Score=80.58 Aligned_cols=224 Identities=8% Similarity=0.007 Sum_probs=143.2
Q ss_pred EEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271 569 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s 645 (835)
+|+.+. ...|+.++++... ....+. ....+..++|++.... +++-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344433 4678899987653 222222 2235678999986444 4454557889999988653212222223345678
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEcC
Q 003271 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG 720 (835)
Q Consensus 646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~~ 720 (835)
+++.+.+..++++-...+.|.++++........+. .....++++|.++.++.+.. .+.|..+++........+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 99988777788777778899999987543332222 23678999998888888774 47899888874433323333
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCC
Q 003271 721 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 797 (835)
Q Consensus 721 h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~ 797 (835)
.-.....|+|++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++.+. ..+.|..++..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence 345678999999877777766 67999999875321 222 222345567777753 3455554 456899999866
Q ss_pred Cc
Q 003271 798 NK 799 (835)
Q Consensus 798 ~~ 799 (835)
++
T Consensus 239 G~ 240 (318)
T 3sov_A 239 GE 240 (318)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.44 E-value=0.00021 Score=77.38 Aligned_cols=275 Identities=8% Similarity=-0.012 Sum_probs=154.6
Q ss_pred CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec----cCCCCeEEEEECCCCCEEEEEE
Q 003271 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSS 616 (835)
Q Consensus 541 ~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~----~h~~~V~sv~fspdg~~Latgs 616 (835)
.+.++..+. + .....+.+|.|.+++..+++ +.+|.|. ...+.++.-..+. .....+.+|.|.+ +. ++.++
T Consensus 23 ~g~~W~~~~-~-~~~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g 96 (327)
T 2xbg_A 23 DYNPWEAIQ-L-PTTATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVG 96 (327)
T ss_dssp SSCCEEEEE-C-SCSSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEE
T ss_pred CCCCceEee-c-CCCCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEE
Confidence 345555544 2 33457999999888877774 4567653 3344333222221 2244688999976 34 44455
Q ss_pred CCCeEEEEecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEe
Q 003271 617 ADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQ 689 (835)
Q Consensus 617 ~Dg~I~IWDl~t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fs 689 (835)
.++.|.. ..+.++ ...... .+...+..|.+.+++. +++++ .++.|+. ....++.-... ...+..+.+.
T Consensus 97 ~~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~ 171 (327)
T 2xbg_A 97 EPPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS 171 (327)
T ss_dssp ETTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC
T ss_pred CCCeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEc
Confidence 6664443 222222 122222 2334577888776643 55444 3555432 22223322222 2346778888
Q ss_pred cCCCEEEEEEcCCcEEEE-EC--CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec--
Q 003271 690 PRLGRILAAAIENYISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-- 764 (835)
Q Consensus 690 p~~~~ll~~s~dg~I~Iw-Dl--~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~-- 764 (835)
+++..++ ++.++.++.- |- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+..
T Consensus 172 ~~~~~~~-~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~ 245 (327)
T 2xbg_A 172 PSGEYVA-VSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPL 245 (327)
T ss_dssp TTSCEEE-EETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTT
T ss_pred CCCcEEE-EECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCc
Confidence 8766554 4455555544 42 3444442 23556788999999998887777888877643222 21111211
Q ss_pred --CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-ec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 765 --TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 765 --~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l~---~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
....+..+++.+++. +++++.++.| ++..+.++.-. +. .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus 246 ~~~~~~~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 246 RRNSVGFLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSCCSCEEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred ccCCcceEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 223588899988776 4555567766 44555555432 32 234678899997554 466777889887654
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=0.00011 Score=82.85 Aligned_cols=233 Identities=10% Similarity=0.116 Sum_probs=142.3
Q ss_pred CEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCC
Q 003271 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (835)
Q Consensus 557 ~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~ 630 (835)
....++|+| ++..|+++...+.|+++|.+++....... .......|+|++++++|+++... ..+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45566666655889999998876554443 45568899999999977766652 134444433221
Q ss_pred ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEc-CCcEE
Q 003271 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAI-ENYIS 705 (835)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~-dg~I~ 705 (835)
.....+.. ......++++|++..++++-..++.|+.|+...+....... .....++|+|++++++++.. .+.|.
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 11122222 23467788999555677777678899999998776533322 23668999999997777664 57888
Q ss_pred EEECCC--CeE--EEEEcCC---------------CCCeE-EEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003271 706 ILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 756 (835)
Q Consensus 706 IwDl~t--~~~--i~~l~~h---------------~~~I~-sl~fs--------pdg~~Lasgs-Dg~I~IwDl~t~~~~ 756 (835)
.++... +.. +..+.+. -.... .++.. ++|.++++-. .+.|+.++. .+
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 887653 221 1111111 01122 45543 3455555544 678888873 33
Q ss_pred ceEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271 757 ECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 796 (835)
Q Consensus 757 ~~i~~l~~~------------------~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~ 796 (835)
.+..+.+. -.....+++++++..|+++.. .+.|+.++++
T Consensus 372 -~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 -RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22222221 125788999996555666654 4588888764
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.38 E-value=0.00082 Score=70.06 Aligned_cols=200 Identities=11% Similarity=0.072 Sum_probs=137.0
Q ss_pred EEecCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271 549 QLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl 626 (835)
+.+.+-.+.+..++|+|++.. +++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 577787788999999997664 5557788999999998 888877632 2246788999988877676656789999998
Q ss_pred CCCCc--eeEEee------cCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEEC-CCCeeeeEe----------ecCceEE
Q 003271 627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVF----------KSGATQM 686 (835)
Q Consensus 627 ~t~~~--~~~~~~------~h~~~V~sl~fsp~g~~ll~sgs~Dg-~I~iwDl-~s~~~~~~~----------~~~i~~l 686 (835)
..... .+.... ..+.....|+|+|.++.++++...+. .|+.|+- .....+... ......+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 112221 23455789999999887877666554 5666651 111112222 1247889
Q ss_pred EEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003271 687 RFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI 750 (835)
Q Consensus 687 ~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~---------~~I~sl~fspdg~~LasgsDg~I~IwDl 750 (835)
+++|..+.+++.+.+ ..|.++|... +.+..+.-.. .....|+|.++|++++++-.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 999998888887765 6788888764 4444433221 2568999999999666654667776653
No 279
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.34 E-value=0.00049 Score=76.73 Aligned_cols=217 Identities=9% Similarity=0.023 Sum_probs=143.4
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCc
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGA 683 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i 683 (835)
+|+.+. ...|+..++..... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. ...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444443 46799999887653 3333445678999999987778877777889999998752 2222232 235
Q ss_pred eEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceE
Q 003271 684 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 759 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i 759 (835)
..+++.+.++.|+.+.. .+.|.+++++.......+.........|+++|.+.+|+... .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 67899987777777765 57899999987655555544455688999999776666655 3688888886542 22
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 760 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 760 ~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
..+...-.....+++++++..|+.+... +.|..+|++......+.. .-....+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 2223334678999999988888888764 589999997665443322 23455677774 33455555555666554
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.32 E-value=0.00015 Score=81.84 Aligned_cols=232 Identities=13% Similarity=0.109 Sum_probs=139.2
Q ss_pred CeEEEEECCC--CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC---C-cEEEEECCC
Q 003271 599 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 672 (835)
Q Consensus 599 ~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D---g-~I~iwDl~s 672 (835)
....|+|+|+ ...|+.+...+.|+.+|..++. +..+........+|+|+++++ ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4568999984 4455555544889999987654 444444556689999999988 66555421 1 233333322
Q ss_pred Cee-eeEe--ecCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEE-c-CCCCCeEEEEEcCCCCEEEEEe--CCe
Q 003271 673 GSC-AGVF--KSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS--DEL 744 (835)
Q Consensus 673 ~~~-~~~~--~~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l-~-~h~~~I~sl~fspdg~~Lasgs--Dg~ 744 (835)
+.. ...+ ......++++++++.|+++. .++.|+.+|..++.....+ . +.......++|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 0111 13356788999555566555 4678999999877652222 2 1222345799999999666665 679
Q ss_pred EEEEEcCCCCC-cceEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 745 VRVWSIGSGSK-GECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 745 I~IwDl~t~~~-~~~i~~l~~~---------------~~~V~sv~f---------spdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
|+.+++..... ......+.+. -.....+++ .+++.++++-...+.|+.++. ++.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 99988763211 0111111111 123567888 566654444444569999985 555
Q ss_pred EEEeccC------------------CCCeeEEEEe-CCCCEEEEEECCCcEEEe
Q 003271 800 TLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 834 (835)
Q Consensus 800 ~~~l~~h------------------~~~V~~la~s-pdg~~LaSgs~DG~V~IW 834 (835)
+..+.+. -.....|+++ +++.++++-...++|+.+
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 5544322 1237789999 566666665566677765
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.31 E-value=0.00037 Score=75.26 Aligned_cols=214 Identities=9% Similarity=0.021 Sum_probs=138.8
Q ss_pred CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEee---cCceEEEEecCC
Q 003271 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK---SGATQMRFQPRL 692 (835)
Q Consensus 617 ~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~---~~i~~l~fsp~~ 692 (835)
....|+.++++...............+..++|++.+..++++-...+.|..+++...... ..+. .....+++.+.+
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 356799999987642122222222457789999877778877777889999999865321 1222 246679999877
Q ss_pred CEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271 693 GRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNK 768 (835)
Q Consensus 693 ~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~ 768 (835)
+.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. .+.|..+++.... ........-..
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~ 167 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYW 167 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCC
Confidence 77777664 57899999876543333434456678999998766666555 4688888876431 11112223456
Q ss_pred eEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEe-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 769 FHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 769 V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l-~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
...+++++++..|+.+... +.|+.+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 7899999988888887764 5899999976544433 22445567788753 3445554445556544
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.29 E-value=0.00052 Score=83.15 Aligned_cols=227 Identities=7% Similarity=-0.033 Sum_probs=148.3
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEecCCCC---ceeEEeecCCCCeE
Q 003271 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLRTFTGHSTTVM 644 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~ 644 (835)
+|+.+. ...|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4578888887665544443 345678999998555544 44556789999987531 11233332445677
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEc
Q 003271 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 719 (835)
Q Consensus 645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~ 719 (835)
.|++.+.++.|+++-...+.|.+.++........+.. ....|+++|.+++|+.+... +.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 8999988888888888889999999986544333332 36789999998888887753 679999987655544454
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcC
Q 003271 720 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT 796 (835)
Q Consensus 720 ~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~ 796 (835)
..-.....|++++.+..|+.+. .+.|.++++..... ..+......-.....|++. +.+|+++... +.|...|..
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence 4446788999998777777776 66899999865422 2222111122344566664 3467766654 588888876
Q ss_pred CCcE
Q 003271 797 ENKT 800 (835)
Q Consensus 797 ~~~~ 800 (835)
+++.
T Consensus 632 tG~~ 635 (791)
T 3m0c_C 632 TGSD 635 (791)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6643
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.29 E-value=0.0002 Score=74.73 Aligned_cols=197 Identities=11% Similarity=0.150 Sum_probs=128.9
Q ss_pred EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVE 710 (835)
Q Consensus 635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~ 710 (835)
.+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+. .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4445556799999999988888888889999999998 88877764 246778888776554544456789999876
Q ss_pred CCeE---EEEEc------CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-------cCCCceEEEE
Q 003271 711 TQVC---RLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 773 (835)
Q Consensus 711 t~~~---i~~l~------~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-------~~~~~V~sv~ 773 (835)
.... +.... ........|+|+|.+..|+++. .+...||.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 22221 1344568999999987777766 3344455443110001111111 1234578999
Q ss_pred EeCCCCEEEEEEcC-CeEEEEEcCCCcEE---Eecc-C------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 774 FHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 774 fspdg~~L~sgs~d-g~I~IwDl~~~~~~---~l~~-h------~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
++|....|++.+.. ..|.++|.... ++ .+.. . -.....|+|.++|+++++ +.-..+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99987777766665 48899997755 44 2321 1 125689999999986555 666655554
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.28 E-value=0.00023 Score=80.26 Aligned_cols=232 Identities=10% Similarity=0.056 Sum_probs=141.3
Q ss_pred CEEEEEEeCC--CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC-----eEEEEecCCC
Q 003271 557 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENP 629 (835)
Q Consensus 557 ~V~sl~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg-----~I~IWDl~t~ 629 (835)
...+++|+++ +..|+.+...+.|+.+|..++.....+. ......+|+|+++++ |+.+...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 4455555544899999998877665543 445688999999999 55444321 2333333322
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-Eeec----CceEEEEecCCCEEEEEEc-CCc
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKS----GATQMRFQPRLGRILAAAI-ENY 703 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~-~~~~----~i~~l~fsp~~~~ll~~s~-dg~ 703 (835)
......+. .......++++|++..++++-..++.|+.+|..++.... .+.. ....++|+|+++.|+++.. .+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11111222 234456788999545577666677899999998776622 2221 1346999999997777765 578
Q ss_pred EEEEECC--CCeE--EEEEcCC---------------CCCeEEEEE---------cCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271 704 ISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGS 754 (835)
Q Consensus 704 I~IwDl~--t~~~--i~~l~~h---------------~~~I~sl~f---------spdg~~Lasgs-Dg~I~IwDl~t~~ 754 (835)
|+.++.. ++.. ...+.+. -.....+++ .++|.++++-. .+.|++++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G- 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG- 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence 9998865 2211 1111111 123567888 67777666655 678999874 32
Q ss_pred CcceEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271 755 KGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 796 (835)
Q Consensus 755 ~~~~i~~l~~~------------------~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~ 796 (835)
.+.++.+. -.....++++|....|+++.. .+.|+.++++
T Consensus 375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22232221 123678889844334555554 4578887764
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.27 E-value=0.0002 Score=77.60 Aligned_cols=183 Identities=14% Similarity=0.200 Sum_probs=125.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC----CC---EEEEEEC---CCeEEEEecCCCCceeEE
Q 003271 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT 635 (835)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd----g~---~Latgs~---Dg~I~IWDl~t~~~~~~~ 635 (835)
...+++.....+-+.|||+ +++.+..+.. +.++.|...|+ ++ ++++... +++|++|+++.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3446666677789999999 8888888854 56777777663 22 2333333 579999988532222444
Q ss_pred eec------CC-CCeEEEEE--cCC-CCcEEEEEeCCCcEEEEECC-------CCeeeeEee--cCceEEEEecCCCEEE
Q 003271 636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFK--SGATQMRFQPRLGRIL 696 (835)
Q Consensus 636 ~~~------h~-~~V~sl~f--sp~-g~~ll~sgs~Dg~I~iwDl~-------s~~~~~~~~--~~i~~l~fsp~~~~ll 696 (835)
+.. .. ..+..+|+ ++. +..+++....+|.+..|++. +.+.++.+. +.+..+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 12 56777887 664 44567778888999999983 335566665 3477888899999999
Q ss_pred EEEcCCcEEEEECC-----CCeEEEEEc-C-CCCCeEEEEE--cCCCC-EEEEEe--CCeEEEEEcC
Q 003271 697 AAAIENYISILDVE-----TQVCRLKLQ-G-HKNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG 751 (835)
Q Consensus 697 ~~s~dg~I~IwDl~-----t~~~i~~l~-~-h~~~I~sl~f--spdg~-~Lasgs--Dg~I~IwDl~ 751 (835)
++-.+..|..||.+ +.+.+..+. + ....+..|++ .++++ ||++++ ++.+.|||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888888866 345565542 2 2246888887 45555 676666 7899999996
No 286
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=7.7e-05 Score=90.33 Aligned_cols=190 Identities=13% Similarity=0.107 Sum_probs=120.0
Q ss_pred CeEEEEEc-CCCCcEEEEEeCCC----cEEEEECCCC-eeee-EeecCceEEEEecCCCEEEEEEcC-----CcEEEEEC
Q 003271 642 TVMSLDFH-PSKEDLLCSCDNNS----EIRYWSINNG-SCAG-VFKSGATQMRFQPRLGRILAAAIE-----NYISILDV 709 (835)
Q Consensus 642 ~V~sl~fs-p~g~~ll~sgs~Dg----~I~iwDl~s~-~~~~-~~~~~i~~l~fsp~~~~ll~~s~d-----g~I~IwDl 709 (835)
.+....|+ |||+.++++.+.+| .|+++|+.++ +.+. .+......++|+|+++.|+....+ ..|+++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 46788999 99998887776554 4999999988 6332 233335678899999998888775 25888898
Q ss_pred CCCe--EEEEEc-CCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcce-EEEe-ecCCCceEEEEEeCCCCE
Q 003271 710 ETQV--CRLKLQ-GHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC-IHEL-SCTGNKFHSCVFHPTFPS 780 (835)
Q Consensus 710 ~t~~--~i~~l~-~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~-i~~l-~~~~~~V~sv~fspdg~~ 780 (835)
.++. ....+. ........+.|+|||++|+... ...|+++|+.++.. .. +..+ ........++.|+. +..
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~ 332 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSH 332 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCE
Confidence 8753 222332 2334567889999999988765 23788899887521 11 1222 22344556666554 444
Q ss_pred EEEEEc-C--C--eEEEEEcCC-CcEEE-eccCCC--CeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 781 LLVIGC-Y--E--TLELWNMTE-NKTLT-LSAHDK--LVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 781 L~sgs~-d--g--~I~IwDl~~-~~~~~-l~~h~~--~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
|+..+. + + .|.++|+.+ +.... +..|.. .+..+.+. .+.++++...||..+||
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 554443 3 2 788888875 33223 334433 44555554 33466677778876654
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=4.6e-05 Score=90.76 Aligned_cols=226 Identities=6% Similarity=-0.048 Sum_probs=129.5
Q ss_pred EEEECC-CCCEEEEEECCC-----------eEEEEecCCCCcee-EEe-ecCCCCeEEEEEcCCCCcEEEEEe-CCCcEE
Q 003271 602 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSL-RTF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR 666 (835)
Q Consensus 602 sv~fsp-dg~~Latgs~Dg-----------~I~IWDl~t~~~~~-~~~-~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I~ 666 (835)
++++.+ ++++++.|+.+. .+.+||..++.... ... ..+.....++++..++. +++.|+ .+..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence 566777 888888887643 68899998876422 122 12333344577777766 555665 556899
Q ss_pred EEECCCCeeeeEee--cC--ceEEEEecCCCEEEEEE-cC-----CcEEEEECCCCeEEEEE----cCCCCCeEEEEEcC
Q 003271 667 YWSINNGSCAGVFK--SG--ATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT 732 (835)
Q Consensus 667 iwDl~s~~~~~~~~--~~--i~~l~fsp~~~~ll~~s-~d-----g~I~IwDl~t~~~i~~l----~~h~~~I~sl~fsp 732 (835)
+||..+.+....-. .. ...+++.+++..+++|+ .+ ..+.+||..+.+-...- ......-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99998876543322 11 23455667888888887 34 56999999887644320 00000000011223
Q ss_pred CCCEEEEEe----------CCeEEEEEcCCCCCcceEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 003271 733 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------- 788 (835)
Q Consensus 733 dg~~Lasgs----------Dg~I~IwDl~t~~~~~~i~~l~~------~~~~V~sv~fsp-dg~~L~sgs~dg------- 788 (835)
++..++.++ ...+.+||..+............ ....-.++.|.. +++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 344333332 34678899887632111111111 011234445544 566666766432
Q ss_pred ----eEEEEEcCCCcEEEec---cCCCC-eeEEEEeCCCCEEEEEECC
Q 003271 789 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD 828 (835)
Q Consensus 789 ----~I~IwDl~~~~~~~l~---~h~~~-V~~la~spdg~~LaSgs~D 828 (835)
.|.+||..+.....+. -+... -.++++.+++++++.|+.+
T Consensus 429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998888776543 22222 2345667899999999865
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.00087 Score=76.41 Aligned_cols=229 Identities=12% Similarity=0.110 Sum_probs=138.4
Q ss_pred CeEEEEECC-CCCEEEEEEC-CCeEEEEecCCCCceeEEeecC----CCCeEEEEE-------cCCCCcEEEEEeCCC--
Q 003271 599 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 663 (835)
Q Consensus 599 ~V~sv~fsp-dg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h----~~~V~sl~f-------sp~g~~ll~sgs~Dg-- 663 (835)
....|+|+| +...|+.+.. .+.|++.|+.++. +..+... ......|+| +++++.++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 356899998 3445555544 4678888888755 3333221 235889999 999887776665542
Q ss_pred ----cEEEEECCC-Cee--------eeEeecCceEEEEecCCCEEEEEEc-CCcEEEEECC-------CCeE--------
Q 003271 664 ----EIRYWSINN-GSC--------AGVFKSGATQMRFQPRLGRILAAAI-ENYISILDVE-------TQVC-------- 714 (835)
Q Consensus 664 ----~I~iwDl~s-~~~--------~~~~~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~-------t~~~-------- 714 (835)
.|.+++... +.. +..+ .+...++++|+++.|+++.. ++.|+.+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 367776443 222 2222 34567889997777776665 5779999987 4442
Q ss_pred ------EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcce--EEEeecC---------------CCce
Q 003271 715 ------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---------------GNKF 769 (835)
Q Consensus 715 ------i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~--i~~l~~~---------------~~~V 769 (835)
+... +.......|+|+|+|++|+.+. ...|+.++...... .. ...+.+. -...
T Consensus 297 ~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 297 PNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred ccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCC
Confidence 2222 2344568999999999766665 67899877643211 10 0112111 0123
Q ss_pred E-EEEEe-------CCCCEEEEEE-cCCeEEEEEcCCCcEEEeccC------------------------CCCeeEEEEe
Q 003271 770 H-SCVFH-------PTFPSLLVIG-CYETLELWNMTENKTLTLSAH------------------------DKLVSSLAAS 816 (835)
Q Consensus 770 ~-sv~fs-------pdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h------------------------~~~V~~la~s 816 (835)
. .++.. .++. |+++. ....|+.++ .++.+.++.+. -.....|+++
T Consensus 375 ~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 44554 3454 55544 456999999 56666554332 1236789999
Q ss_pred CC-CCEEEEEECCCcEEEe
Q 003271 817 TV-NGMVASASHDKCVKIW 834 (835)
Q Consensus 817 pd-g~~LaSgs~DG~V~IW 834 (835)
++ +.++++=....+|+.+
T Consensus 453 ~~~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTTTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEE
Confidence 97 6665655566677765
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0021 Score=77.77 Aligned_cols=215 Identities=9% Similarity=0.029 Sum_probs=139.5
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCc
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGA 683 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i 683 (835)
+|+.+ ....|+..++..... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. ...
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34333 445688888876553 3333345678899999977778877777889999998753 2222333 336
Q ss_pred eEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceE
Q 003271 684 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 759 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i 759 (835)
..|++.+.++.|+++.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999998888887775 57899999986655444444455688999999866666655 3 67888888654 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 760 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 760 ~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
..+...-.....|++++.+..|+++... +.|..+++.......+.. .-....+|++..+ .++++-...+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEE
Confidence 2233334678999999888888888654 489999997765543322 2234556666432 3333333344444
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=0.0012 Score=75.34 Aligned_cols=239 Identities=14% Similarity=0.131 Sum_probs=144.9
Q ss_pred CEEEEEEeC-CCC-EEEEEeCCCeEEEEEcCCCeEEEEeccC---CCCeEEEEE-------CCCCCEEEEEECCC-----
Q 003271 557 KVESCHFSP-DGK-LLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 619 (835)
Q Consensus 557 ~V~sl~fSp-dg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h---~~~V~sv~f-------spdg~~Latgs~Dg----- 619 (835)
....|+|+| +.. ++++-...+.|++.|.+++.+...+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 357899998 344 4444444467999999887776655432 235889999 99999777776654
Q ss_pred --eEEEEecCC-CCce----eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-------CCee----------
Q 003271 620 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 675 (835)
Q Consensus 620 --~I~IWDl~t-~~~~----~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-------s~~~---------- 675 (835)
.|.+++... +... ...+... .....++++|++..++++...++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665443 1221 0222211 2346788999777788888888999999997 5543
Q ss_pred -eeE-ee----cCceEEEEecCCCEEEEEEc-CCcEEEEEC--CCCeEE--EEEcCC---C------------CCeE-EE
Q 003271 676 -AGV-FK----SGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVCR--LKLQGH---K------------NQVH-SV 728 (835)
Q Consensus 676 -~~~-~~----~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl--~t~~~i--~~l~~h---~------------~~I~-sl 728 (835)
... +. .....++|+|+++.++++.. ...|+.+|. .++... ..+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 111 21 22568999999997776665 467888654 333220 122111 1 1234 45
Q ss_pred EEc-------CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC------------------------CCceEEEEEeC
Q 003271 729 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP 776 (835)
Q Consensus 729 ~fs-------pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~------------------------~~~V~sv~fsp 776 (835)
+.. .++.++++-. ...|+.++. ++ .+.++.+. -.....|++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 4556555555 779999983 33 23333221 12367889988
Q ss_pred CCCEEEEEEc-CCeEEEEEcCCCcEE
Q 003271 777 TFPSLLVIGC-YETLELWNMTENKTL 801 (835)
Q Consensus 777 dg~~L~sgs~-dg~I~IwDl~~~~~~ 801 (835)
+...|+++.. ...|+.++++...+.
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 7334555554 458888888776554
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.06 E-value=0.0029 Score=74.77 Aligned_cols=218 Identities=10% Similarity=0.000 Sum_probs=145.1
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEE
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMR 687 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~ 687 (835)
+|+.+ ....|+..++++...........-..+..|+|++.+..++++-..++.|+.+++........+.. ....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 45679999998755322222223356889999998888888877889999999976544333432 367899
Q ss_pred EecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEee
Q 003271 688 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 763 (835)
Q Consensus 688 fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~ 763 (835)
+++.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+. .+.|...++..... . .+.
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~---~l~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-T---TLV 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E---EEE
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-E---EEE
Confidence 9988888877765 47899999876543333333445678999998655665555 45788888765421 2 222
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 764 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 764 ~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
........+++++++..|+.+... +.|..+|+.......+........+|++.. +.++++-...+.|...
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 345678999999988888888764 589999997755443333444566888765 4444444345556543
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.96 E-value=0.0018 Score=70.72 Aligned_cols=225 Identities=8% Similarity=0.062 Sum_probs=123.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE--EEEec---cCCCCeEEEEECCC---CCEEEEEEC-C-----Ce
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RT 620 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--i~~l~---~h~~~V~sv~fspd---g~~Latgs~-D-----g~ 620 (835)
-..-..++|.|||+++++ ..++.|++++ +++. +..+. ........|+|+|+ +..|+++.. + ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345779999999985554 5679999998 3432 22222 12356889999998 555555443 2 67
Q ss_pred EEEEecCCCCc-----eeEEee---cCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC------
Q 003271 621 VRVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------ 673 (835)
Q Consensus 621 I~IWDl~t~~~-----~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~-------------Dg~I~iwDl~s~------ 673 (835)
|..|+...... .+..+. ........|+|.|+|. ++++.+. .|.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 88888774321 111122 1112346899999985 5544332 256766766531
Q ss_pred ------eeeeEeec---CceEEEEecCCCEEEEEEcC-Cc--------EEEEECCC----------------CeEEEEEc
Q 003271 674 ------SCAGVFKS---GATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQ 719 (835)
Q Consensus 674 ------~~~~~~~~---~i~~l~fsp~~~~ll~~s~d-g~--------I~IwDl~t----------------~~~i~~l~ 719 (835)
.....+.. ....++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 11112221 14568899955556655543 22 33322111 01222222
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc---ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~---~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|+|..+++..
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234567777 4566555544 668888887654210 01122223346788999999997555443
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.95 E-value=0.01 Score=69.93 Aligned_cols=274 Identities=8% Similarity=-0.019 Sum_probs=160.1
Q ss_pred CCEEEEEEeCCCCEE-EEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEEEecCCCCce
Q 003271 556 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS 632 (835)
Q Consensus 556 ~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~--Dg~I~IWDl~t~~~~ 632 (835)
.....+++++.+..| ++-...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~- 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR- 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence 568899999965554 45556789999998765433333344455778999997666666654 35677677764332
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc-CCcEEEEE
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI-ENYISILD 708 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~-dg~I~IwD 708 (835)
.......-.....|++++++..++++-...+.|..+|+.......... .....+++..+ .++.+.. .+.|...|
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN 240 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence 222223345678999999878788777778899999997544332222 12345666543 6666554 57788888
Q ss_pred CCCCeEEEEEcC-----------CC---------------------------CCeEEEEE-----cCC--------CCEE
Q 003271 709 VETQVCRLKLQG-----------HK---------------------------NQVHSVCW-----NTS--------GEYL 737 (835)
Q Consensus 709 l~t~~~i~~l~~-----------h~---------------------------~~I~sl~f-----spd--------g~~L 737 (835)
..+++....+.. |. ....|.|- .+| ..+|
T Consensus 241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L 320 (619)
T 3s94_A 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL 320 (619)
T ss_dssp SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence 876543222110 00 01112110 011 1244
Q ss_pred EEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcEEEe-ccCCCCeeEEEE
Q 003271 738 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLAA 815 (835)
Q Consensus 738 asgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~l-~~h~~~V~~la~ 815 (835)
+.+..+.|+..++...........+ ..-..+..++|++.+..|+.+.. .+.|+.+++.......+ ...-..+..|++
T Consensus 321 l~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 321 LLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 4455566777777654321111111 12345788999997777777765 56899999887544433 233356788999
Q ss_pred eCCCC-EEEEEECCCcEEE
Q 003271 816 STVNG-MVASASHDKCVKI 833 (835)
Q Consensus 816 spdg~-~LaSgs~DG~V~I 833 (835)
...++ ++++-+..+.|.+
T Consensus 400 D~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp ETTTTEEEEEETTTTEEEE
T ss_pred ecccCcEEEEeCCCCcEEE
Confidence 87555 4444334455554
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.94 E-value=0.0022 Score=75.59 Aligned_cols=220 Identities=7% Similarity=-0.011 Sum_probs=136.6
Q ss_pred CCeEEEEEcCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271 576 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (835)
Q Consensus 576 Dg~I~VWd~~t~~-~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~ 653 (835)
...|++.++.... ....+...-..+..|+|++.+..|+.+.. .+.|..++++........+...-.....|++++.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 5678888887643 22222233456789999987666665554 678999988764321223333335788999999878
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEcCCCCCeEEE
Q 003271 654 DLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVHSV 728 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~~h~~~I~sl 728 (835)
.++++-...+.|.+.++........+. .....++++|.++.++.+... +.|...++............-.....|
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 788888888999999998654333332 236789999998888887753 577777776543333333345567899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcE
Q 003271 729 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 800 (835)
Q Consensus 729 ~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~ 800 (835)
++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 9999877777776 668988888654221111 111222345666554 5666654 45899999877653
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.94 E-value=0.0089 Score=70.57 Aligned_cols=222 Identities=7% Similarity=-0.022 Sum_probs=149.5
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271 569 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl 646 (835)
+|+.+ ....|+..++++......+. ..-..+..|+|++....|+.+ ..++.|..++++.... ...+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 45544 45789999998765443332 223467899999876555544 4578999999876442 22333222457789
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEcCC
Q 003271 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 721 (835)
Q Consensus 647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h 721 (835)
++.+.+..++++-...+.|.+.++........+. .....++++|..+.|+.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 9988878788887778899999997543322221 23678999998888888774 4678888887554333333 4
Q ss_pred CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCC
Q 003271 722 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 798 (835)
Q Consensus 722 ~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~ 798 (835)
-.....|++++++..|+.+. .+.|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56788999999888777776 67999999976532 22 233344566777765 35666665 568999997666
Q ss_pred c
Q 003271 799 K 799 (835)
Q Consensus 799 ~ 799 (835)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.93 E-value=0.0067 Score=66.33 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=126.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-EEEEec---cCCCCeEEEEECCC---CCEEEEEEC----C----C
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 619 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-~i~~l~---~h~~~V~sv~fspd---g~~Latgs~----D----g 619 (835)
-....+++|.|||++++ +..+|.|++++. +++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997554 566799999973 454 222221 12346889999997 455554433 3 5
Q ss_pred eEEEEecCCCC------c-eeEEeec-CCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC-----
Q 003271 620 TVRVWDTENPD------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG----- 673 (835)
Q Consensus 620 ~I~IWDl~t~~------~-~~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~-------------Dg~I~iwDl~s~----- 673 (835)
.|..|+..... . .+..+.. .......|.|.|+|. ++++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 67788876541 1 1111221 112346799999986 4444322 246666665432
Q ss_pred ----eeeeEee-cCceEEEEecCCCEEEEEEcCC----cEEEEECCC----------------CeEEEEEcCCCCCeEEE
Q 003271 674 ----SCAGVFK-SGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSV 728 (835)
Q Consensus 674 ----~~~~~~~-~~i~~l~fsp~~~~ll~~s~dg----~I~IwDl~t----------------~~~i~~l~~h~~~I~sl 728 (835)
..+.... .....++|+|+.+.|+++.... .|.+..... ..++..+.........+
T Consensus 185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 0111111 1256799999555566655432 244432211 01222331123457788
Q ss_pred EEc-------CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003271 729 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 729 ~fs-------pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-~~~~~V~sv~fspdg~~L~sg 784 (835)
+|. .+|.++++.. .+.|..+++...........+. .....+..+++.|+|..+++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 883 4676666555 6789888887532111122222 234678999999999644443
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.89 E-value=2.3e-05 Score=94.04 Aligned_cols=224 Identities=8% Similarity=-0.016 Sum_probs=136.5
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCC---CceeEEeecCCCCeEEEEEcCC
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 651 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~---~~~~~~~~~h~~~V~sl~fsp~ 651 (835)
.+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888887666544433 34567899998766666554 4578999998751 1111222112234567888876
Q ss_pred CCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEcCCCCCeE
Q 003271 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH 726 (835)
Q Consensus 652 g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~~h~~~I~ 726 (835)
+..|+++-...+.|.++++........+. .....++++|.+++|+++... +.|.++++........+...-....
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 66677776677899999988654443333 235678999987777776543 6788887764322222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEe
Q 003271 727 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL 803 (835)
Q Consensus 727 sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l 803 (835)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+++. ..+.|..+|..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 899998866666555 67899999865321 222111111233445566543 455554 456999999888876643
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.85 E-value=0.057 Score=68.04 Aligned_cols=270 Identities=9% Similarity=0.011 Sum_probs=149.3
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCc-e
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY-S 632 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~-~ 632 (835)
.+|.-..|...|..-+.+..+.-..+|... ++....--..........|+.. ..-++.. .++.++|..+++... .
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEE
T ss_pred CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCee
Confidence 345444454444433333334555555433 3333221111122234456442 2334433 355699988765332 2
Q ss_pred eEEeecCCCCeEEEEEcCCCCcEEEEEeC------------------------------------------------CCc
Q 003271 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE 664 (835)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~------------------------------------------------Dg~ 664 (835)
.+.+. -...+..++++|..+.+++.++. -+.
T Consensus 730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 22222 34567888888876654443321 124
Q ss_pred EEEEECCCCeeeeEeecC----ceEEE---EecC-CCEEEEEE----------cCCcEEEEECCCCeEEEEE-cCCCCCe
Q 003271 665 IRYWSINNGSCAGVFKSG----ATQMR---FQPR-LGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQV 725 (835)
Q Consensus 665 I~iwDl~s~~~~~~~~~~----i~~l~---fsp~-~~~ll~~s----------~dg~I~IwDl~t~~~i~~l-~~h~~~I 725 (835)
|+++|..+.+.+..+.-. +.+++ |..+ ..++++|+ ..|.|++|++...+..... ....+.|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 677777777766555422 33333 3222 36788777 2378999998754332221 1246788
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--EcCCCcEEEe
Q 003271 726 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 803 (835)
Q Consensus 726 ~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l 803 (835)
++++-. +| +|+++-...|++|++...+... ....... .|..+.....+.+|++|..-..|.++ +...++...+
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 888754 34 6666778899999997653211 1111111 13333333356789999988866664 5555655543
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 804 --SAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 804 --~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
..+...++++.|-.+ ..++.+..+|.|.+.
T Consensus 964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 345667888888755 467778999998875
No 299
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.84 E-value=0.037 Score=66.60 Aligned_cols=261 Identities=11% Similarity=0.083 Sum_probs=153.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~ 634 (835)
...|.++....+| .|..|+.+ -+.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+... .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred CceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence 3569998888777 56666655 4889998876543311112335777754 344 56666666 588889876542 2
Q ss_pred Eee-----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-e-------cCceEEEEecCCCEEEEEEcC
Q 003271 635 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-------SGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 635 ~~~-----~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~-------~~i~~l~fsp~~~~ll~~s~d 701 (835)
.+. .....|.++....++. +.+ ++. +-|..||..+++..... . ..+.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQ-IYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCC-EEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCC-EEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 221 1234688888877765 433 443 45788888776543211 1 12566777777777777774
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEe-----ecCCCceEEEEEeC
Q 003271 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 776 (835)
Q Consensus 702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l-----~~~~~~V~sv~fsp 776 (835)
+.|..||..+++...........|.+++...+|.+.++. ++-|.+++..+... ..+... .-....|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 568899988765432211123458888888888877655 55688888766421 111100 01234588888887
Q ss_pred CCCEEEEEEcCCeEEEEEcCCC-cEEEec-----cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 777 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 777 dg~~L~sgs~dg~I~IwDl~~~-~~~~l~-----~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
++. |.+|+..| |.++..... +..... .....|.++....+|.+.+. +.+|.+
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~ 346 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI 346 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence 776 66677666 555433221 111111 12346888887777765554 455533
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.84 E-value=0.0027 Score=68.51 Aligned_cols=228 Identities=11% Similarity=0.028 Sum_probs=128.5
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~ 631 (835)
...+.+|.|++ +..++ ++.++.|.. ..+.++.-..+. .+...+..|.+.+++..++++ .++.|.. ..+.+..
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688999986 44444 455665544 333333322222 234567888887776665554 5664422 1222322
Q ss_pred eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE-EEC--CCCeeeeE-eecCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGV-FKSGATQMRFQPRLGRILAAAIENYISIL 707 (835)
Q Consensus 632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i-wDl--~s~~~~~~-~~~~i~~l~fsp~~~~ll~~s~dg~I~Iw 707 (835)
-......+...+..+.+.+++. +++.+. +|.|+. +|- .+-+.+.. ....+..+.+.+++. +++++.+|.+++.
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s 230 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFS 230 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEeCCceEEEe
Confidence 1223334556789999999865 554554 455444 332 22222211 123466778888765 5566677887776
Q ss_pred ECCCCeEEEEEc-C---CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec---CCCceEEEEEeCCCCE
Q 003271 708 DVETQVCRLKLQ-G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPS 780 (835)
Q Consensus 708 Dl~t~~~i~~l~-~---h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~---~~~~V~sv~fspdg~~ 780 (835)
+...++.-..+. . +...+.++.+.+++.+++++.++.| ++....+. ....+.. ....+.++.|.+++ .
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~---tW~~~~~~~~~~~~~~~v~~~~~~-~ 305 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQ---TWQQDVDVKKVPSNFYKILFFSPD-Q 305 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTS---SCEECGGGTTSSSCCCEEEEEETT-E
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCc---ccEEcCccCCCCCCeEEEEEECCC-c
Confidence 433233222222 1 2235889999998888888888877 44455452 2233321 23567888887554 4
Q ss_pred EEEEEcCCeEEEEEc
Q 003271 781 LLVIGCYETLELWNM 795 (835)
Q Consensus 781 L~sgs~dg~I~IwDl 795 (835)
+++++.+|.|..++-
T Consensus 306 ~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 306 GFILGQKGILLRYVT 320 (327)
T ss_dssp EEEECSTTEEEEECC
T ss_pred eEEEcCCceEEEEcC
Confidence 778888888777653
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0068 Score=65.14 Aligned_cols=199 Identities=9% Similarity=0.090 Sum_probs=123.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCeEEEE-ecc----CC--CCeEEEEE---CCCCCEEEEEE-----
Q 003271 553 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS----- 616 (835)
Q Consensus 553 gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t~~~i~~-l~~----h~--~~V~sv~f---spdg~~Latgs----- 616 (835)
...---.|++|++....|..++ ..++|..||...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3333456789988555555555 789999999986544333 322 11 13679999 68877777544
Q ss_pred --------CCCeEEEEecC---CCCceeEE-eec-----------CCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEECCC
Q 003271 617 --------ADRTVRVWDTE---NPDYSLRT-FTG-----------HSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN 672 (835)
Q Consensus 617 --------~Dg~I~IWDl~---t~~~~~~~-~~~-----------h~~~V~sl~fsp~g~~ll~sgs~D-g~I~iwDl~s 672 (835)
.+..|..||+. +++..... +.. -......++..++|+ ..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCC
Confidence 26789999998 66542222 111 112478999999987 55577777 7887777764
Q ss_pred CeeeeEee--------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE--EEEE-cCC---CCCeEEE-EEcCCCCEE
Q 003271 673 GSCAGVFK--------SGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKL-QGH---KNQVHSV-CWNTSGEYL 737 (835)
Q Consensus 673 ~~~~~~~~--------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~--i~~l-~~h---~~~I~sl-~fspdg~~L 737 (835)
......+. .+.+.++++|++..|++....+.|..+|+.+... +..- .+. -.....+ ..-.+|+.|
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 42221111 2366899999999999988899999999985433 2111 021 1223443 333467775
Q ss_pred EEEe--CCeEEEEEcCC
Q 003271 738 ASVS--DELVRVWSIGS 752 (835)
Q Consensus 738 asgs--Dg~I~IwDl~t 752 (835)
+++. .+.+.+.+...
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 5554 55555555443
No 302
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.80 E-value=0.059 Score=57.53 Aligned_cols=246 Identities=9% Similarity=0.157 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l 655 (835)
+..|.|.|+.+...+.+..-. .-+.-.+|..+.||.-. ..++.|+|+++... ++.+.- ...|.-=.|-.+.. +
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~k-lks~~~-~e~VvfWkWis~~~-L 120 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V 120 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCEEEEEECSSSE-E
T ss_pred CCEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhh-hcceec-CCccEEEEecCCCe-E
Confidence 347888898875433221111 12344688888777765 67899999998654 444443 35677777776533 3
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEeec-------CceEEEEecCCCEEEEEEc-------CCcEEEEECCCCeEEEEEcC
Q 003271 656 LCSCDNNSEIRYWSINN-GSCAGVFKS-------GATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 720 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s-~~~~~~~~~-------~i~~l~fsp~~~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~ 720 (835)
.+.+ +..|+.|++.. ..+.+.+.. .+...+.+++.++++..+- .|.+.+|..+.+. ...+++
T Consensus 121 ~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 197 (365)
T 2xzh_A 121 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 197 (365)
T ss_dssp EEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred EEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeee
Confidence 3333 56899999975 344555542 2556677888888776553 3678899888653 345566
Q ss_pred CCCCeEEEEEcCC---CCEEEEEe----CCeEEEEEcCCC---CC--cc-eEEEee---cCCCceEEEEEeCCCCEEEEE
Q 003271 721 HKNQVHSVCWNTS---GEYLASVS----DELVRVWSIGSG---SK--GE-CIHELS---CTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 721 h~~~I~sl~fspd---g~~Lasgs----Dg~I~IwDl~t~---~~--~~-~i~~l~---~~~~~V~sv~fspdg~~L~sg 784 (835)
|......+.+..+ ..+++.+. .+.+.|.++... .. .+ .+..+. ...+-..++..++....++..
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 6544433322211 12344443 258999998553 11 11 111111 124456788899999999999
Q ss_pred EcCCeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 785 GCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
+..|.|++||++++.++. -.-....|..-+-+.+..-++.....|.|
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 999999999999999883 33334455554544444445555566654
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.78 E-value=0.0068 Score=66.15 Aligned_cols=222 Identities=12% Similarity=0.064 Sum_probs=122.7
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeEEe---ecCCCCeEEEEEcCC---CCcEEEEEeCC-----CcE
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 665 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~---~~h~~~V~sl~fsp~---g~~ll~sgs~D-----g~I 665 (835)
.....++|.|++++++ +..+|.|++++ ++.. .+..+ .........|+|+|+ +..++++.... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567999999998554 56679999998 3321 11111 122356889999998 55566555433 678
Q ss_pred EEEECCCCee------eeEee------cCceEEEEecCCCEEEEEEc-------------CCcEEEEECCCC--------
Q 003271 666 RYWSINNGSC------AGVFK------SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 712 (835)
Q Consensus 666 ~iwDl~s~~~------~~~~~------~~i~~l~fsp~~~~ll~~s~-------------dg~I~IwDl~t~-------- 712 (835)
..|+...+.. +..+. .....++|.|++..+++.+. .+.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888774321 11122 12457999999865554322 145666665430
Q ss_pred ------eEEEEEcCCCCCeEEEEEcC-CCCEEEEEe-CCeE------EEEEcCCCCC---------------cceEEEee
Q 003271 713 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 763 (835)
Q Consensus 713 ------~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs-Dg~I------~IwDl~t~~~---------------~~~i~~l~ 763 (835)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 01111 122 2356789999 677666544 2331 2333333220 1122233
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc-------EEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~-------~~~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
.+......++| .++..+++.-..+.|...+++... ...+..-...+.++++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22334567777 355544444445578888776432 122223346789999999998777664
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.76 E-value=0.0018 Score=70.90 Aligned_cols=192 Identities=9% Similarity=0.067 Sum_probs=109.6
Q ss_pred eEEEEECCCCCEEEEE------------ECCCeEEEEecCCCCceeE--Eeec-----CCCCeEEEEEcC--CCCc-EEE
Q 003271 600 ITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKED-LLC 657 (835)
Q Consensus 600 V~sv~fspdg~~Latg------------s~Dg~I~IWDl~t~~~~~~--~~~~-----h~~~V~sl~fsp--~g~~-ll~ 657 (835)
..+|...++|..++++ ..+|.|.++|..+...... .+.+ ..-....|.+.+ ++.. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4456666665444443 2689999999984322122 2222 223677788766 3443 444
Q ss_pred EEeC--CCcEEEEECCCC--ee--eeEeec----CceEEEEecCCCEEEEEEc-----------------CCcEEEEECC
Q 003271 658 SCDN--NSEIRYWSINNG--SC--AGVFKS----GATQMRFQPRLGRILAAAI-----------------ENYISILDVE 710 (835)
Q Consensus 658 sgs~--Dg~I~iwDl~s~--~~--~~~~~~----~i~~l~fsp~~~~ll~~s~-----------------dg~I~IwDl~ 710 (835)
+-.. +..|.+|++... .. +..+.+ ....+.+.++|..+++... .+.|+.+|..
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4333 457777776543 22 222322 2678889998775554331 2456666653
Q ss_pred CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcC
Q 003271 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCY 787 (835)
Q Consensus 711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs~d 787 (835)
+...... .-...+.++|+||+++|+.+. .+.|..|++...........+ ......-.+++.+ +|.+.+++..+
T Consensus 212 --~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 212 --DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp --CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred --eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 2222222 234568899999999888776 779999999743222222333 2356678899999 58866655544
Q ss_pred C-eEEEEEc
Q 003271 788 E-TLELWNM 795 (835)
Q Consensus 788 g-~I~IwDl 795 (835)
+ .|..|+-
T Consensus 288 g~~v~~~~P 296 (355)
T 3sre_A 288 GMRIFFYDA 296 (355)
T ss_dssp HHHHHSCCT
T ss_pred ceEEEEECC
Confidence 3 4444443
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.74 E-value=0.072 Score=56.87 Aligned_cols=234 Identities=13% Similarity=0.174 Sum_probs=156.2
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC
Q 003271 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h 639 (835)
+.-.+|..+.||.=. ...+.|||+++...++.+.- ...|.-=+|-.+. .|+..+ +..|+-|+++....+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 344578888777765 67899999999998888764 4567666776543 454443 4579999998766677777766
Q ss_pred C----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCceEEE-EecCC----CEEEE-EEc---
Q 003271 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGATQMR-FQPRL----GRILA-AAI--- 700 (835)
Q Consensus 640 ~----~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i~~l~-fsp~~----~~ll~-~s~--- 700 (835)
. ..|..-..+++.+.++++|- -.|.+.+|..+.+. ...+.++..+.. +-.++ ..+++ +..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 4 45777778888888887764 24678889887543 334444433332 32222 22333 222
Q ss_pred CCcEEEEECCCC---------eEEEEEcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271 701 ENYISILDVETQ---------VCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 701 dg~I~IwDl~t~---------~~i~~l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
.+.++|.++... +.+..+.. ..+-..++..++...+++..+ -|.|++||+.++ .++..-+....
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS~d 302 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 302 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccCCC
Confidence 268999988532 11111211 133455777788777787777 999999999999 78887777777
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.|...+.+....-+++....|.|.-..+++..++
T Consensus 303 ~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 303 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp CEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred ceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 7777776666566777778887777776665543
No 306
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.74 E-value=0.066 Score=64.34 Aligned_cols=266 Identities=8% Similarity=0.050 Sum_probs=154.1
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-cc----CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~----h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~ 629 (835)
...|.++....+|.+.+ |+. +-|..|+..+.+..... .. ....|.++....++..|..|+. +-|..+|..+.
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 34688998888887655 444 45888898776654221 11 1234888888777766655654 45888888765
Q ss_pred CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEE
Q 003271 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAA 699 (835)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s 699 (835)
.. ..........|.++....++. +. .|+. +-|.+++..+.+...... ..+.++....++. |-+|+
T Consensus 222 ~~-~~~~~l~~~~i~~i~~d~~g~-lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT 296 (758)
T 3ott_A 222 QI-KQTEAFHNNSIKSLALDGNGD-LL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGT 296 (758)
T ss_dssp EE-EEEEEEEEEEEEEEEECTTCC-EE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEE
T ss_pred eE-EeccCCCCCeEEEEEEcCCCC-EE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEe
Confidence 42 111111234588888877765 33 3443 458888887654432211 1256666666544 55566
Q ss_pred cCCcEEEEECCCCeEEEEEc-----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-------cCCC
Q 003271 700 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN 767 (835)
Q Consensus 700 ~dg~I~IwDl~t~~~i~~l~-----~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-------~~~~ 767 (835)
..| +.++.....-...... .....|.+++-..+|.+.+...+ -+..++..++... .+..+. ....
T Consensus 297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 373 (758)
T 3ott_A 297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERH-DAIWYRMGDKTYPLSHN 373 (758)
T ss_dssp SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCC-CCEEECTTCSSSCCSCS
T ss_pred CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccc-eeEEeccCCcCCCCCCC
Confidence 655 5555432211111111 12346899998888887776534 4666765543111 111111 1234
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec--c-----CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~--~-----h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.|.++.-..++. |.+|+ ++.|..||..+++...+. . ....|.++....++.+.+ |+..+-|.+|
T Consensus 374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 588888877776 55666 568999999888765332 1 234588888777765444 5655445554
No 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.73 E-value=0.0025 Score=67.34 Aligned_cols=229 Identities=10% Similarity=0.042 Sum_probs=117.1
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCC--
Q 003271 566 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 630 (835)
Q Consensus 566 dg~~Lasgs-~D-----g~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~-- 630 (835)
++.+++.|+ .+ ..+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 3688999887654322 1111111222222 56677777754 468999998766
Q ss_pred -ceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc
Q 003271 631 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI 700 (835)
Q Consensus 631 -~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~ 700 (835)
.... .+........++.+ + ..+++.|+.+ ..+.+||+.+.+....-. .. ....+...++..++.|+.
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 3211 11111111222222 3 4566677643 368899998876543322 11 111222225555566654
Q ss_pred C-----CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCc
Q 003271 701 E-----NYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNK 768 (835)
Q Consensus 701 d-----g~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~ 768 (835)
+ ..+.+||+.+.+-...-.. ....-.+++. -++++++.|+ + ..|.+||+.+..- ..+..+......
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCY 246 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCCBS
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcccc
Confidence 3 5689999987754432111 1111112222 2566666665 3 3689999987521 111111111111
Q ss_pred eEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEe
Q 003271 769 FHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 803 (835)
Q Consensus 769 V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l 803 (835)
...+.+ ++..++.|+.+ ..|.+||..+.+...+
T Consensus 247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 222222 56666666655 3688999988776533
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.69 E-value=0.00013 Score=87.42 Aligned_cols=211 Identities=9% Similarity=0.026 Sum_probs=129.3
Q ss_pred CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEee---cCceEEEEec
Q 003271 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK---SGATQMRFQP 690 (835)
Q Consensus 618 Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s----~~~~~~~~---~~i~~l~fsp 690 (835)
.+.|++.++.+... ..+......+..|+|++.+..|+++-...+.|+.+++.. ......+. .....+++.+
T Consensus 385 ~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 45688888876543 222223345778999988777777766778999999875 22222222 1245688887
Q ss_pred CCCEEEEEE-cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceEEEeecCC
Q 003271 691 RLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTG 766 (835)
Q Consensus 691 ~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i~~l~~~~ 766 (835)
.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... . ..+....
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~--~l~~~~l 539 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y--SLVTENI 539 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C--EESCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e--EEEeCCC
Confidence 666666654 457899999886654444433334567889998765555544 3 6788887754321 1 1112223
Q ss_pred CceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 767 NKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.....|+|+|++..|+++.. .+.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 45678999998777777765 4589999997654443332 2234456666553 455555555667665
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.68 E-value=0.018 Score=62.94 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=127.4
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe---ecCCCCeEEEEEcCC---CCcEEEEEeC---C----Cc
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----SE 664 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~---~~h~~~V~sl~fsp~---g~~ll~sgs~---D----g~ 664 (835)
.....++|.|+++ |+++..+|.|+++|.. +...+..+ .........|+|+|+ +..++++... + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578999999997 4555667999999743 32112211 122356889999997 5556655442 3 56
Q ss_pred EEEEECCCC--e-----ee-eEeec----CceEEEEecCCCEEEEEEc-------------CCcEEEEECCCC-------
Q 003271 665 IRYWSINNG--S-----CA-GVFKS----GATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------- 712 (835)
Q Consensus 665 I~iwDl~s~--~-----~~-~~~~~----~i~~l~fsp~~~~ll~~s~-------------dg~I~IwDl~t~------- 712 (835)
|..|+.... . .+ ..+.. ....++|.|++..+++.+. .+.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 888887654 1 11 11221 2457999999875555332 145666665432
Q ss_pred --eEEEEEcCCCCCeEEEEEcC-CCCEEEEEe--CC--eEEEEEcCCCCC---------------cceEEEeecCCCceE
Q 003271 713 --VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKFH 770 (835)
Q Consensus 713 --~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs--Dg--~I~IwDl~t~~~---------------~~~i~~l~~~~~~V~ 770 (835)
..+. ..++. ....++|++ +|.++++-. +. .|.+.. .+.. ...+..+........
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1121 12332 345799999 677666544 22 344432 2210 112233312234577
Q ss_pred EEEEe-------CCCCEEEEEEcCCeEEEEEcCCC-cEE---Eec-cCCCCeeEEEEeCCCCEEEEEE
Q 003271 771 SCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 771 sv~fs-------pdg~~L~sgs~dg~I~IwDl~~~-~~~---~l~-~h~~~V~~la~spdg~~LaSgs 826 (835)
.++|. .++.++++.-..+.|..+++... +.. .+. .....+.+|++.|||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 88883 45654544445568999888753 332 222 2245789999999998777664
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.67 E-value=0.013 Score=62.99 Aligned_cols=206 Identities=10% Similarity=0.061 Sum_probs=129.7
Q ss_pred eccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeec----CC--CCeEEEEE---cCCCCcEEEEEe--
Q 003271 593 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HS--TTVMSLDF---HPSKEDLLCSCD-- 660 (835)
Q Consensus 593 l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~----h~--~~V~sl~f---sp~g~~ll~sgs-- 660 (835)
+......-.+++|++....|+.++ ..++|..||...+......+.+ .. ..+..|.| .|++ .++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence 334444556889988655666665 7999999999855432222221 11 13579999 5874 4555443
Q ss_pred -----------CCCcEEEEECC---CCeeeeEee------c----------CceEEEEecCCCEEEEEEcC-CcEEEEEC
Q 003271 661 -----------NNSEIRYWSIN---NGSCAGVFK------S----------GATQMRFQPRLGRILAAAIE-NYISILDV 709 (835)
Q Consensus 661 -----------~Dg~I~iwDl~---s~~~~~~~~------~----------~i~~l~fsp~~~~ll~~s~d-g~I~IwDl 709 (835)
.+..|..||+. +++.+.... . ....+++.++|+.+++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 26789999999 777665443 1 36789999999999999998 88888888
Q ss_pred CCCeEEEEEcC-----CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--c---CCCceEEE-EEeCC
Q 003271 710 ETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--C---TGNKFHSC-VFHPT 777 (835)
Q Consensus 710 ~t~~~i~~l~~-----h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~---~~~~V~sv-~fspd 777 (835)
........+.. .....+.|++.|+|..|++.. ++.|..+|+...... .+. .. + .......+ ..-.+
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~-~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEP-VKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEE-CEESSCCCCCTTEEEEEEEEET
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eec-ccccCCcccccCcccccccccC
Confidence 75433322211 122367899999999888887 889999999853110 122 11 1 11223333 33446
Q ss_pred CCEEEEEE-cCCeEEEEEcCCCcEE
Q 003271 778 FPSLLVIG-CYETLELWNMTENKTL 801 (835)
Q Consensus 778 g~~L~sgs-~dg~I~IwDl~~~~~~ 801 (835)
|+.|+++. ..+.+.+.+.+..+..
T Consensus 245 G~vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp TEEEEEEEETTEEEEEECSSTTSEE
T ss_pred CEEEEEEcCCCCEEEEECCCCccee
Confidence 77655554 4556666666554433
No 311
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.66 E-value=0.007 Score=65.60 Aligned_cols=179 Identities=11% Similarity=0.182 Sum_probs=117.3
Q ss_pred cEEEEEeCCCcEEEEECCCCeeeeEee-cCceEEEEecC----CCE--EEE-EEc---CCcEEEEECC--CCeEEEEEcC
Q 003271 654 DLLCSCDNNSEIRYWSINNGSCAGVFK-SGATQMRFQPR----LGR--ILA-AAI---ENYISILDVE--TQVCRLKLQG 720 (835)
Q Consensus 654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~~i~~l~fsp~----~~~--ll~-~s~---dg~I~IwDl~--t~~~i~~l~~ 720 (835)
.++++....+-+.+||+ .++.+..+. +....+.+-|. +.. +++ ... ++.|.+|++. ++. +..+..
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence 35667777889999999 788888776 44566655552 222 333 333 4789999773 333 444421
Q ss_pred ------CC-CCeEEEEE--cCC-CC-EEEEEe-CCeEEEEEcCCC----CCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271 721 ------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 721 ------h~-~~I~sl~f--spd-g~-~Lasgs-Dg~I~IwDl~t~----~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg 784 (835)
.. ..+..+|+ ++. +. |+++.. +|.+..|++... ...+.++++.. ...+..|++.+....|+++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEe
Confidence 11 55667787 664 54 455555 899999998432 12345666664 4678899999999999999
Q ss_pred EcCCeEEEEEcC-----CCcEEEeccC---CCCeeEEEEe--CCCC-EEEEEE-CCCcEEEeC
Q 003271 785 GCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 835 (835)
Q Consensus 785 s~dg~I~IwDl~-----~~~~~~l~~h---~~~V~~la~s--pdg~-~LaSgs-~DG~V~IWd 835 (835)
-.+..|..|+.+ +++.+...+. ...+..|++- ++++ +|+++| .+.++.|||
T Consensus 198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 999888888865 3445543322 2468888884 4555 566555 566787775
No 312
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.64 E-value=0.011 Score=64.51 Aligned_cols=230 Identities=8% Similarity=0.062 Sum_probs=126.4
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeE----EeecCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 662 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~----~~~~h~~~V~sl~fsp~---g~~ll~sgs~-------D 662 (835)
...+.|+|.|++++|+++...|.|++++...... .+. .+.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 3467999999998455556789999998542110 011 11122345789999996 5556555433 2
Q ss_pred CcEEEEECCCC--e--eeeE-e---e------cCceEEEEecCCCEEEEEEcC--------------CcEEEEECCCC--
Q 003271 663 SEIRYWSINNG--S--CAGV-F---K------SGATQMRFQPRLGRILAAAIE--------------NYISILDVETQ-- 712 (835)
Q Consensus 663 g~I~iwDl~s~--~--~~~~-~---~------~~i~~l~fsp~~~~ll~~s~d--------------g~I~IwDl~t~-- 712 (835)
..|..|++... . .... + . .....++|.|++ .|+++..+ +.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35777776533 1 1111 1 1 114579999997 45555433 45777776532
Q ss_pred ------------eEEEEEcCCCCCeEEEEEcC-CCCEEEEEe--CCeEEEEEcCCCCC----------------------
Q 003271 713 ------------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK---------------------- 755 (835)
Q Consensus 713 ------------~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs--Dg~I~IwDl~t~~~---------------------- 755 (835)
..+.. .++ .....++|++ +|.++++-. ++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 122 3467899999 566555433 22222322222110
Q ss_pred ------cceEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEEcCCCcEE---Eec-cCCCCeeEEEEeCC
Q 003271 756 ------GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTV 818 (835)
Q Consensus 756 ------~~~i~~l~~~~~~V~sv~fsp-------dg~~L~sgs~dg~I~IwDl~~~~~~---~l~-~h~~~V~~la~spd 818 (835)
...+..+. +...+..++|.. ++.++++.-..+.|...+++.++.. .+. .....+..|++.||
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 01112222 223567777764 3555555445668888888766544 222 22357999999999
Q ss_pred CCEEEEEE-CCCcE
Q 003271 819 NGMVASAS-HDKCV 831 (835)
Q Consensus 819 g~~LaSgs-~DG~V 831 (835)
|.++++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98766543 35544
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.62 E-value=0.14 Score=56.78 Aligned_cols=246 Identities=9% Similarity=0.139 Sum_probs=152.5
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l 655 (835)
+..|.|.|+.+...+.+-.- ..-+.-.+|..+.||.-. ..++.|+|+++... +..+.- ...|.-=.|-.+.. +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~-~e~VvfWkWis~~~-l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCCCEEEEEETTE-E
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceec-CCCceEEEecCCCe-E
Confidence 34788889887543322111 112345788877777765 67999999998654 444443 34566666665532 3
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEeec-------CceEEEEecCCCEEEEEEc-------CCcEEEEECCCCeEEEEEcC
Q 003271 656 LCSCDNNSEIRYWSINN-GSCAGVFKS-------GATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 720 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s-~~~~~~~~~-------~i~~l~fsp~~~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~ 720 (835)
.+.+ +..|+.|++.. ..+++.|.- .+...+.+++.++++..+- .|.+.+|..+.+. ...+++
T Consensus 120 ~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred EEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 3333 67899999974 344555542 2566677888888776553 3678899888653 345666
Q ss_pred CCCCeEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCC-----CcceEEEee----cCCCceEEEEEeCCCCEEEEE
Q 003271 721 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS-----KGECIHELS----CTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 721 h~~~I~sl~fspdg---~~Lasgs----Dg~I~IwDl~t~~-----~~~~i~~l~----~~~~~V~sv~fspdg~~L~sg 784 (835)
|......+.+..+. .+++.+. .+.+.|.++.... ..+....+. ...+-..++..++....++..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 65544444332211 2344444 2699999996531 111111111 123456788899999999999
Q ss_pred EcCCeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 785 GCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
+..|.|++||++++.++. -.-....|..-+.+....-++.....|.|
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 999999999999999883 33344556555555555555555566654
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.61 E-value=0.041 Score=59.83 Aligned_cols=231 Identities=12% Similarity=0.104 Sum_probs=130.6
Q ss_pred EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce-eEEe----ecCCCCeEEEEEcCC---CCcEEEEE--eC
Q 003271 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN 661 (835)
Q Consensus 592 ~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~-~~~~----~~h~~~V~sl~fsp~---g~~ll~sg--s~ 661 (835)
.+...-...+.|+|.|++++|++--..|.|++++..++... +..+ .........|+|+|+ +..++++- ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 33333456789999999987777655899999986654421 1111 223456889999995 34444432 24
Q ss_pred CCcEEEEECCCC----------eee-eEee----cCceEEEEecCCCEEEEEEc-------------CCcEEEEECCCC-
Q 003271 662 NSEIRYWSINNG----------SCA-GVFK----SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ- 712 (835)
Q Consensus 662 Dg~I~iwDl~s~----------~~~-~~~~----~~i~~l~fsp~~~~ll~~s~-------------dg~I~IwDl~t~- 712 (835)
++.|.-|.+..+ +.+ ..+. .....+.|.|++..+++.+. .|.|.-++....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 556777766541 111 1122 12456999999876666432 255655665432
Q ss_pred --------eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------------cceEEEeecCCC
Q 003271 713 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN 767 (835)
Q Consensus 713 --------~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~---------------~~~i~~l~~~~~ 767 (835)
..+. -.+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+..
T Consensus 186 p~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 1122 22343 345789999988776654 44333333333211 112233332223
Q ss_pred ceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcE----E-EeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 768 KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~----~-~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
....++|.. +. ++.+.. .+.|..+.+..... . .+.+....+.+|++.|||.++++.+
T Consensus 264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 566777763 43 444444 44676667655432 2 2334457899999999998777654
No 315
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.59 E-value=0.047 Score=68.79 Aligned_cols=271 Identities=13% Similarity=0.102 Sum_probs=147.9
Q ss_pred CCCEEEEEEeCC------CCEEEEEeC-CCeEEEEEcCCCeEEEEeccC-CCCeEEEEEC--CCCCEEEEEECCCeEEEE
Q 003271 555 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATSSADRTVRVW 624 (835)
Q Consensus 555 ~~~V~sl~fSpd------g~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fs--pdg~~Latgs~Dg~I~IW 624 (835)
.+.|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....-. .....++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 468999997 999999999987766443211 1233444332 234578899999988777
Q ss_pred ecCC--CCcee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-cCceEE-EEecC--CCEEE
Q 003271 625 DTEN--PDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-SGATQM-RFQPR--LGRIL 696 (835)
Q Consensus 625 Dl~t--~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~~i~~l-~fsp~--~~~ll 696 (835)
.++. +...- ..+.+ ..++.-..+...+..-+++++ +....+|.-+..-....+. ..+..+ .|+.. .+-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence 6653 33211 12333 345554445444444444444 4444444433221111111 123233 34332 13344
Q ss_pred EEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C-------------------------------
Q 003271 697 AAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------------------------------- 742 (835)
Q Consensus 697 ~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D------------------------------- 742 (835)
+..++.++|..+.+. -.+.++. -...+..++++|..+.++.+. +
T Consensus 711 -~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 -LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp -EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred -EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 344566888876532 2233333 345677788877666544332 1
Q ss_pred ------------------CeEEEEEcCCCCCcceEEEeecC-CCceEEEE---EeCC-CCEEEEEE----------cCCe
Q 003271 743 ------------------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCV---FHPT-FPSLLVIG----------CYET 789 (835)
Q Consensus 743 ------------------g~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~---fspd-g~~L~sgs----------~dg~ 789 (835)
..|+++|-.+. +.+..+.-. ...+.+++ |..+ ..+|++|+ ..|.
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 13555555444 333333322 22334443 3222 46888887 2468
Q ss_pred EEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 790 LELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 790 I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
|++|++.++++. .....++.|++++-- +|++|++. ..+|+||+
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 999999765544 333557889998854 35444433 46788875
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.53 E-value=0.012 Score=62.08 Aligned_cols=225 Identities=8% Similarity=0.033 Sum_probs=116.0
Q ss_pred CEEEEEeC--CCeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECC----CeEEEEecCCCCceeEE-eec
Q 003271 568 KLLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTG 638 (835)
Q Consensus 568 ~~Lasgs~--Dg~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~D----g~I~IWDl~t~~~~~~~-~~~ 638 (835)
.+++.|+. ...+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||+.+....... +..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 35789999887654322 1111112222223 56677777754 57889998876532111 111
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc---------
Q 003271 639 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI--------- 700 (835)
Q Consensus 639 h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~--------- 700 (835)
.......+.+ + ..+++.|+.+ ..+.+||+.+.+....-. .+ ....+...++..++.|+.
T Consensus 91 ~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 91 PRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEE
T ss_pred cccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccc
Confidence 1111222222 3 4577677654 468999998876543321 11 111112234455555543
Q ss_pred CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271 701 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773 (835)
Q Consensus 701 dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~ 773 (835)
-..+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..|.+||+.+.. ...+..+.........+.
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEE
Confidence 34588999988754332111 11111222222 566666655 2 368999988752 111111111112223333
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEEcCCCcEE
Q 003271 774 FHPTFPSLLVIGCY-----ETLELWNMTENKTL 801 (835)
Q Consensus 774 fspdg~~L~sgs~d-----g~I~IwDl~~~~~~ 801 (835)
+ ++..+++|+.+ ..|.+||..+.+..
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 56667777754 47999999988765
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.52 E-value=0.18 Score=55.81 Aligned_cols=234 Identities=13% Similarity=0.179 Sum_probs=156.1
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC
Q 003271 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h 639 (835)
+.-.+|..+.||.=. ..++.|||+++...++.+.-.+ .|.-=+|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 345677777777655 6899999999999888876544 4555566543 3455443 5679999998766677777766
Q ss_pred C----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCceEEE-EecCC----CEEEEEE-c---
Q 003271 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGATQMR-FQPRL----GRILAAA-I--- 700 (835)
Q Consensus 640 ~----~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i~~l~-fsp~~----~~ll~~s-~--- 700 (835)
. ..|..-..+++.+.++++|- -.|.+.+|..+.+. ...+.++..+.. +-.++ ..+++-. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 4 45777778899888887764 24678889887543 333444433322 22222 1233333 2
Q ss_pred CCcEEEEECCCC--------eEEEE-EcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271 701 ENYISILDVETQ--------VCRLK-LQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 701 dg~I~IwDl~t~--------~~i~~-l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
.+.++|.++... +.... +.. -..-..++..++...+++..+ -|.|++||+.++ .++..-.....
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~~ 301 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE 301 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccCC
Confidence 278999998542 11111 111 133455778888877888777 999999999999 78887777777
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
.|...+.+....-+++....|.|.-..+++..++
T Consensus 302 ~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred ceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 7777777776667777788887777777665543
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.52 E-value=0.0058 Score=64.54 Aligned_cols=229 Identities=11% Similarity=0.025 Sum_probs=114.5
Q ss_pred CCEEEEEeCC----CeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCceeEE
Q 003271 567 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 635 (835)
Q Consensus 567 g~~Lasgs~D----g~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~~~~~ 635 (835)
+.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 4455566543 4588899887654332 1111111122222 56677777654 35888998876532111
Q ss_pred -eecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc------
Q 003271 636 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI------ 700 (835)
Q Consensus 636 -~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~------ 700 (835)
+.........+.+ + ..+++.|+.++ .+.+||+.+.+....-. .. ....+...++..+++|+.
T Consensus 94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 1111111222222 3 35666666543 58889998876543322 11 111112224455555543
Q ss_pred -CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271 701 -ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSC 772 (835)
Q Consensus 701 -dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv 772 (835)
...+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..+.+||+.+..- ..+..+........ +
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~-~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAG-V 247 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCE-E
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccccCe-E
Confidence 24588999987654332111 11111222222 566666665 3 3689999887521 11111111111112 2
Q ss_pred EEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEEec
Q 003271 773 VFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLS 804 (835)
Q Consensus 773 ~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~ 804 (835)
+. -++..+++|+.++ .|.+||..+.+...+.
T Consensus 248 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 248 CA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp EE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred EE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 22 2566666766553 5999999988776543
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.50 E-value=0.014 Score=63.65 Aligned_cols=221 Identities=12% Similarity=0.075 Sum_probs=122.2
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-------ccCCCCeEEEEECCC---CCEEEEEE-C-------C
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D 618 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-------~~h~~~V~sv~fspd---g~~Latgs-~-------D 618 (835)
....|+|.|||++|+++...|.|++++.+ +.....+ .........|+|+|+ +..|+++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 47899999999834455567999999853 3322111 112345789999996 44554443 2 2
Q ss_pred CeEEEEecCCCCce---eE-Eeec------CCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCCe-
Q 003271 619 RTVRVWDTENPDYS---LR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 674 (835)
Q Consensus 619 g~I~IWDl~t~~~~---~~-~~~~------h~~~V~sl~fsp~g~~ll~sgs~-------------Dg~I~iwDl~s~~- 674 (835)
..|..|++...... .. .+.. .......|.|.|+|. ++++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666766543110 11 1111 111245799999985 4444432 2467777765320
Q ss_pred -----------eeeEeec---CceEEEEecCCCEEEEEEcCC--cEEEEECCCC--------------------------
Q 003271 675 -----------CAGVFKS---GATQMRFQPRLGRILAAAIEN--YISILDVETQ-------------------------- 712 (835)
Q Consensus 675 -----------~~~~~~~---~i~~l~fsp~~~~ll~~s~dg--~I~IwDl~t~-------------------------- 712 (835)
....+.. ....++|++..+.|+++.... .-.|.-+..+
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1122221 256789999666777765532 1122111111
Q ss_pred -----eEEEEEcCCCCCeEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCcceEE--Ee-ecCCCceEEEEEeC
Q 003271 713 -----VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIH--EL-SCTGNKFHSCVFHP 776 (835)
Q Consensus 713 -----~~i~~l~~h~~~I~sl~fsp-------dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~--~l-~~~~~~V~sv~fsp 776 (835)
.++..+. +...+..+.|.. +|.++++.. .+.|...++..+ ..+. .+ ......+..+++.|
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD---KVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT---EEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC---eEeeeEEcccCCCCceeEEEECC
Confidence 1112222 234567778764 466666555 778888888754 2222 12 23345789999999
Q ss_pred CCCEEEE
Q 003271 777 TFPSLLV 783 (835)
Q Consensus 777 dg~~L~s 783 (835)
+|..+++
T Consensus 333 dG~lyv~ 339 (353)
T 2g8s_A 333 DGYLYVL 339 (353)
T ss_dssp TSCEEEE
T ss_pred CCcEEEE
Confidence 9984443
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.40 E-value=0.17 Score=55.11 Aligned_cols=201 Identities=14% Similarity=0.133 Sum_probs=119.4
Q ss_pred EEecCCCCCEEEEEEeCCCCEEEEEe------------CCCeEEEEEcCC--CeEE-EEecc-----CCCCeEEEEECC-
Q 003271 549 QLIPASTSKVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP- 607 (835)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdg~~Lasgs------------~Dg~I~VWd~~t--~~~i-~~l~~-----h~~~V~sv~fsp- 607 (835)
+.+++-......+++.++|..+++++ .+|.|.++|.++ .+.. ..+.+ ..-....|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 33444333456777888885555541 689999999873 2321 12222 223567777755
Q ss_pred -CCC-EEEEEEC---CCeEEEEecCCCCcee---EEeecC-CCCeEEEEEcCCCCcEEEEEe-----------------C
Q 003271 608 -SLS-RLATSSA---DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------N 661 (835)
Q Consensus 608 -dg~-~Latgs~---Dg~I~IWDl~t~~~~~---~~~~~h-~~~V~sl~fsp~g~~ll~sgs-----------------~ 661 (835)
++. +|+++.. +.+|.||+++...... ..+.+. -...+.+.+.++|. ++++.. .
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence 344 4544432 4688898887643322 223222 24578999999876 544543 1
Q ss_pred CCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc-CCcEEEEECCC-CeE--EEEEcCCCCCeEEEEEcC-CCCE
Q 003271 662 NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNT-SGEY 736 (835)
Q Consensus 662 Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t-~~~--i~~l~~h~~~I~sl~fsp-dg~~ 736 (835)
.|.|+.+|..+-+.+..--.....++|+|+++.++++.. .+.|+.||+.. +.. ...+ ........+++++ +|++
T Consensus 202 ~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 202 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp CEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred ccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence 255666666322221111134678999999999888875 58899999863 322 2233 2345678899999 5998
Q ss_pred EEEEe-CC-eEEEEEcC
Q 003271 737 LASVS-DE-LVRVWSIG 751 (835)
Q Consensus 737 Lasgs-Dg-~I~IwDl~ 751 (835)
.+++. ++ .|..|+..
T Consensus 281 wva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEESCHHHHHSCCTT
T ss_pred EEEecCCceEEEEECCC
Confidence 88776 43 55555543
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.33 E-value=0.11 Score=56.42 Aligned_cols=236 Identities=8% Similarity=0.059 Sum_probs=125.8
Q ss_pred EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEe----ccCCCCeEEEEECCC---CCEEEEE-E-
Q 003271 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS-S- 616 (835)
Q Consensus 548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l----~~h~~~V~sv~fspd---g~~Latg-s- 616 (835)
+..+...-..-+.|+|.|||++|++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|++. +
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3344444556889999999997777655899999987655532 222 123456889999995 3444433 2
Q ss_pred -CCCeEEEEecCCCC----------ceeEEee-cCCCCeEEEEEcCCCCcEEEEEe------------CCCcEEEEECCC
Q 003271 617 -ADRTVRVWDTENPD----------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINN 672 (835)
Q Consensus 617 -~Dg~I~IWDl~t~~----------~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs------------~Dg~I~iwDl~s 672 (835)
.++.|.-|.+.... ..+..+. ........|.|.|+|..++.+|+ ..|.|.-++...
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 35566667665421 1111121 11123457999999864443332 235666666542
Q ss_pred Ce-------eeeEeec---CceEEEEecCCCEEEEEEc--CCcEEEEECCCCe------------------EEEEEcCCC
Q 003271 673 GS-------CAGVFKS---GATQMRFQPRLGRILAAAI--ENYISILDVETQV------------------CRLKLQGHK 722 (835)
Q Consensus 673 ~~-------~~~~~~~---~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~------------------~i~~l~~h~ 722 (835)
.- ....+.. ....++|+|++. |+++.. ++.-.|.-+..+. ++..+..+.
T Consensus 184 ~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 20 0112222 256789999754 444443 2222222222111 122222222
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271 723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs 785 (835)
.....++|. +|..++..- .+.|....+..... .+....+......+..++..|||..+++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 345667775 455555444 55666666654321 112223334456788999999986544443
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.32 E-value=0.026 Score=59.90 Aligned_cols=225 Identities=7% Similarity=-0.010 Sum_probs=114.6
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEEC-----C------CeEEEEecCCCCceeEEe
Q 003271 569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~-----D------g~I~IWDl~t~~~~~~~~ 636 (835)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||..+... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence 344555 579999998876442 22212222333334457788888873 1 1277888877553 222
Q ss_pred ecCCCCe--EEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc-C-
Q 003271 637 TGHSTTV--MSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI-E- 701 (835)
Q Consensus 637 ~~h~~~V--~sl~fsp~g~~ll~sgs~D--------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~-d- 701 (835)
..-..+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. .+ ....+...++..++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence 1111111 122222 34566666632 468999998876433221 11 112222234455566665 2
Q ss_pred ----CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCcceEEEeecCCCceE
Q 003271 702 ----NYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 770 (835)
Q Consensus 702 ----g~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg-----~I~IwDl~t~~~~~~i~~l~~~~~~V~ 770 (835)
..+.+||..+.+-...-.. ....-.+++.. ++++++.|+ ++ .+.+||+.+.. ...+..+........
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSSLS 238 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBSCE
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCccccee
Confidence 4699999987643322111 11111222222 566666665 33 68889987751 111111111111122
Q ss_pred EEEEeCCCCEEEEEEcC--------------CeEEEEEcCCCcEEEe
Q 003271 771 SCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 803 (835)
Q Consensus 771 sv~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~l 803 (835)
.+.+ ++..+++|+.+ ..|.+||+.+.+...+
T Consensus 239 ~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 239 LVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2222 55666666653 2588999988876644
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.29 E-value=0.0089 Score=63.43 Aligned_cols=228 Identities=7% Similarity=0.022 Sum_probs=115.4
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEEC----C-----CeEEEEecCCC
Q 003271 565 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 629 (835)
Q Consensus 565 pdg~~Lasgs~D----g~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~----D-----g~I~IWDl~t~ 629 (835)
-++.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777632 4688999887654322 1111111122222 5667777665 2 35888998876
Q ss_pred CceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEee--cC--ceEEEEecCCCEEEEEE
Q 003271 630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFK--SG--ATQMRFQPRLGRILAAA 699 (835)
Q Consensus 630 ~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~--~~--i~~l~fsp~~~~ll~~s 699 (835)
..... .+.........+.+ + ..+++.|+.+ ..+.+||+.+.+....-. .. ...++. .++..++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeC
Confidence 53111 11111111222222 3 3466666533 468899998876443221 11 112222 2445555555
Q ss_pred cC-----CcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCC
Q 003271 700 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 766 (835)
Q Consensus 700 ~d-----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~ 766 (835)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+..- ..+..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCc
Confidence 43 4689999987654322 1111111222222 566666665 3 4699999887521 1111111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEe
Q 003271 767 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 803 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l 803 (835)
... +++.. ++..+++|+.+ ..|.+||+.+.+...+
T Consensus 254 ~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 254 SAL-GITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp BSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred cce-EEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 112 22222 55666666644 3788999988876543
No 324
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.27 E-value=0.0071 Score=63.74 Aligned_cols=214 Identities=12% Similarity=0.098 Sum_probs=105.5
Q ss_pred CCCEEEEEE-CC-----CeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCe-
Q 003271 608 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 674 (835)
Q Consensus 608 dg~~Latgs-~D-----g~I~IWDl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~- 674 (835)
++.+++.|+ .+ ..+.+||+.+....... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36888888875531111 1111111222222 2 4577777654 469999998766
Q ss_pred --eeeE--eecC-ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271 675 --CAGV--FKSG-ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS- 741 (835)
Q Consensus 675 --~~~~--~~~~-i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs- 741 (835)
.... +... ....+...++..+++|+.+ ..+.+||+.+.+-.. .+...... .+++. -++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~ 168 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVV-ASGVIYCLGGY 168 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEE-ETTEEEEECCB
T ss_pred CeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEE-ECCEEEEECCC
Confidence 3322 1111 1111222244555555543 468999998765333 22211111 22222 2566666665
Q ss_pred C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCC-Ce
Q 003271 742 D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK-LV 810 (835)
Q Consensus 742 D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~-~V 810 (835)
+ ..+.+||+.+..- ..+..+.........+.+ ++..+++|+.+ ..|.+||+.+.+...+..... ..
T Consensus 169 ~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp CSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 3 3689999887521 111111111111122222 55666666654 479999999888765432211 11
Q ss_pred eEEEEeCCCCEEEEEECCC
Q 003271 811 SSLAASTVNGMVASASHDK 829 (835)
Q Consensus 811 ~~la~spdg~~LaSgs~DG 829 (835)
...+..-++++++.|+.++
T Consensus 246 ~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 246 YVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp SCEEEEETTEEEEECCBCS
T ss_pred ceeEEEECCEEEEEcCcCC
Confidence 1112223677778887653
No 325
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.27 E-value=3.2e-05 Score=93.23 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=2.4
Q ss_pred ccCCCCeeEEEEeC
Q 003271 804 SAHDKLVSSLAAST 817 (835)
Q Consensus 804 ~~h~~~V~~la~sp 817 (835)
..|-..+..+.|.+
T Consensus 706 SDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 706 SDHIPLLARFEFMK 719 (727)
T ss_dssp SSBCC---------
T ss_pred CCceeEEEEEEEec
Confidence 34555555555544
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.22 E-value=0.043 Score=62.43 Aligned_cols=255 Identities=11% Similarity=0.069 Sum_probs=146.3
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEeccC-------------------------CCCeE--EEEEC---CCCCEEEEEEC-C
Q 003271 570 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWIT--DVRFS---PSLSRLATSSA-D 618 (835)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h-------------------------~~~V~--sv~fs---pdg~~Latgs~-D 618 (835)
|.+|+..|.|+|+-+.+++.+..+.-. .+... .+.+. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678899999999999999988877310 11111 22222 25778887764 5
Q ss_pred CeEEEEecCCCCceeEEeecCCCCeEEEEEc--CCCCcEEEEEe------CCCcEE------------EEECCCCeeeeE
Q 003271 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEIR------------YWSINNGSCAGV 678 (835)
Q Consensus 619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs--p~g~~ll~sgs------~Dg~I~------------iwDl~s~~~~~~ 678 (835)
..|...+++.-++...........+.++.|- |+..++++.+- .||... ..|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777788877554222233345678888886 56665554441 233211 112222222111
Q ss_pred e--ecCceEEEEecCCCEEEEEEcCC---------------cEEEEECC-------------------------C----C
Q 003271 679 F--KSGATQMRFQPRLGRILAAAIEN---------------YISILDVE-------------------------T----Q 712 (835)
Q Consensus 679 ~--~~~i~~l~fsp~~~~ll~~s~dg---------------~I~IwDl~-------------------------t----~ 712 (835)
+ .+....+...+++++.++.+.+. .+.++++. . +
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 1 12233445566777777766532 25555442 2 1
Q ss_pred eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC---------CCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 713 ~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~---------~~~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
..+..+..-....+.+.++|||+++++++ +.+|.|+|++.. ....++..-...+-...-.+|.++|. .
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-a 391 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-A 391 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-E
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-e
Confidence 11111111223445688999999999988 889999999842 11122333233466678889999994 4
Q ss_pred EEEE-cCCeEEEEEcCCC----------cEE-EeccCCCCeeEEEE------eCCCCEEEEEE
Q 003271 782 LVIG-CYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS 826 (835)
Q Consensus 782 ~sgs-~dg~I~IwDl~~~----------~~~-~l~~h~~~V~~la~------spdg~~LaSgs 826 (835)
++.- -|..|..|++... .++ ++.-|-. +-.+.- .+||++|++.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 4444 6889999998653 233 4444432 223322 57888888876
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.19 E-value=0.018 Score=60.84 Aligned_cols=210 Identities=10% Similarity=0.050 Sum_probs=106.0
Q ss_pred CEEEEEEC--CCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEee--
Q 003271 610 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK-- 680 (835)
Q Consensus 610 ~~Latgs~--Dg~I~IWDl~t~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~D----g~I~iwDl~s~~~~~~~~-- 680 (835)
.+++.|+. ...+.+||..+.+.... .+.........+.+ ++.+++.|+.+ ..+.+||+.+.+....-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 35688999887653211 11111111222222 24577777654 678999998876543322
Q ss_pred cC-ceEEEEecCCCEEEEEEcC------CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEe-C---------
Q 003271 681 SG-ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D--------- 742 (835)
Q Consensus 681 ~~-i~~l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h-~~~I~sl~fspdg~~Lasgs-D--------- 742 (835)
.. ....+...++..+++|+.+ ..+.+||..+.+-...-... ...-.+++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence 11 1112222245556666654 46899999887543321111 111112222 2556666554 2
Q ss_pred CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCC---CCeeEEE
Q 003271 743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSSLA 814 (835)
Q Consensus 743 g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~---~~V~~la 814 (835)
..+.+||+.+..- ..+..+...... .+++.. ++..+++|+.+ ..|.+||+.+.+...+.... ....++.
T Consensus 169 ~~~~~yd~~~~~W-~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 169 NSCEVYDPATETW-TELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCEEEEETTTTEE-EEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred ceEEEeCCCCCeE-EECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 3488999887521 111111111111 222222 55566666543 37899999988776543221 1122222
Q ss_pred EeCCCCEEEEEECC
Q 003271 815 ASTVNGMVASASHD 828 (835)
Q Consensus 815 ~spdg~~LaSgs~D 828 (835)
+ ++++++.|+.+
T Consensus 246 ~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 246 V--GSIVYVLAGFQ 257 (306)
T ss_dssp E--TTEEEEEECBC
T ss_pred E--CCEEEEEeCcC
Confidence 2 67788888855
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.15 E-value=0.02 Score=60.32 Aligned_cols=217 Identities=11% Similarity=0.064 Sum_probs=107.6
Q ss_pred CEEEEEECC----CeEEEEecCCCCceeEEeecCCCC--eEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeE
Q 003271 610 SRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGV 678 (835)
Q Consensus 610 ~~Latgs~D----g~I~IWDl~t~~~~~~~~~~h~~~--V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~ 678 (835)
.+++.|+.+ ..+.+||+.+... ..+.....+ -.+++.. ++.+++.|+.+ ..+.+||+.+.+....
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERW--HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcE--eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344455432 3578888876543 222111111 1122222 34577777654 3688999988765433
Q ss_pred ee--cC-ceEEEEecCCCEEEEEEcCC-----cEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C------
Q 003271 679 FK--SG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D------ 742 (835)
Q Consensus 679 ~~--~~-i~~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D------ 742 (835)
-. .. ....+...++..+++|+.++ .+.+||+.+.+-...-.. ....-.+++. -++++++.|+ +
T Consensus 93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEE
T ss_pred CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCcc
Confidence 22 11 11112223456666676553 588899887654332111 1111122222 2556666554 2
Q ss_pred -CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCCC--eeEEE
Q 003271 743 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLA 814 (835)
Q Consensus 743 -g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~~--V~~la 814 (835)
..+.+||+.+..- ..+..+.........+.+ ++..+++|+.+ ..+.+||+.+.+...+...... -.+++
T Consensus 172 ~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 172 LSTVECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp CCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccEEEEEeCCCCcE-EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 2588999877521 111111111111222222 55666666654 3799999998887654432211 11222
Q ss_pred EeCCCCEEEEEECCC-----cEEEeC
Q 003271 815 ASTVNGMVASASHDK-----CVKIWK 835 (835)
Q Consensus 815 ~spdg~~LaSgs~DG-----~V~IWd 835 (835)
. -++++++.|+.++ .|.+||
T Consensus 249 ~-~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 249 A-VNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp E-ETTEEEEECCBCSSSBCCCEEEEE
T ss_pred E-ECCEEEEECCcCCCcccccEEEEc
Confidence 2 3677888887654 355554
No 329
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.06 E-value=0.12 Score=55.06 Aligned_cols=214 Identities=4% Similarity=-0.083 Sum_probs=125.7
Q ss_pred CCCCEEEEEe--CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC--------------CeEEEEecCC
Q 003271 565 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN 628 (835)
Q Consensus 565 pdg~~Lasgs--~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D--------------g~I~IWDl~t 628 (835)
.++.+|+... .++.|+..+.+.... ..+... . +--|++++.+|+-+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSC-EEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCC-EEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 4566666654 256666666654332 233211 1 23456788888777543 3677777776
Q ss_pred CCceeEEeecCCCCeEEEEEcCCCCcEEEEE---eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc-CCcE
Q 003271 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI-ENYI 704 (835)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg---s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~-dg~I 704 (835)
... ..+... . +..|+++++.++++- ..+..|+..++............+ ..++++++.|+..+. ...|
T Consensus 98 ~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 98 HGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp CCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCE
T ss_pred Ccc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceE
Confidence 542 223221 1 235677778777665 345567777776544333333333 456888888887766 5789
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271 705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 781 (835)
Q Consensus 705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L 781 (835)
++.++..+.....+.+ ... ..+.|++.+|+-.. + ..|..-++..... ..+. ...+ ..|+|++..|
T Consensus 170 y~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g~~I 237 (302)
T 3s25_A 170 YRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYGSLI 237 (302)
T ss_dssp EEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEETTEE
T ss_pred EEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECCCEE
Confidence 9999887765544432 222 34568999888776 3 2566666665421 1222 1223 3478889888
Q ss_pred EEEEc--CCeEEEEEcCCCcEEEe
Q 003271 782 LVIGC--YETLELWNMTENKTLTL 803 (835)
Q Consensus 782 ~sgs~--dg~I~IwDl~~~~~~~l 803 (835)
+.++. .+.|..-+++......+
T Consensus 238 y~~~~~~~~~i~~~~~DG~~r~~l 261 (302)
T 3s25_A 238 FYQRGGDNPALCVVKNDGTGFKEL 261 (302)
T ss_dssp EEEECSSSCEEEEEETTSCCCEEE
T ss_pred EEEECCCCcEEEEEECCCCccEEe
Confidence 87643 35788888876554433
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.05 E-value=0.068 Score=56.69 Aligned_cols=225 Identities=8% Similarity=0.012 Sum_probs=110.9
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEEC----CC-------eEEEEecCCCCceeEEe
Q 003271 569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRTF 636 (835)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~----Dg-------~I~IWDl~t~~~~~~~~ 636 (835)
+++.|+. .+.+||..+.+-.. .+..............++.+++.|+. ++ .+.+||..+... ..+
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EEC
Confidence 3444443 48899988876543 22211122223334456778888873 12 277888876543 222
Q ss_pred ecCC--CCeEEEEEcCCCCcEEEEEeCC-------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc----
Q 003271 637 TGHS--TTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI---- 700 (835)
Q Consensus 637 ~~h~--~~V~sl~fsp~g~~ll~sgs~D-------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~---- 700 (835)
.... ..-.+++.. + +.+++.|+.+ ..+.+||+.+.+-...-. .. ....+...++..++.|+.
T Consensus 94 ~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 94 PPLPSARCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp SCBSSCBCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSS
T ss_pred CCCCccccccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCC
Confidence 1111 111122222 3 4566666643 358889998876543322 11 111122234455555553
Q ss_pred --CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271 701 --ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 771 (835)
Q Consensus 701 --dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~s 771 (835)
-..+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..+.+||+.+..- ..+..+....... +
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~-~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQERSSI-S 248 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSCCBSC-E
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCcccce-E
Confidence 24699999988754332111 11111222322 556666665 2 2578899877521 1121111111111 2
Q ss_pred EEEeCCCCEEEEEEcC--------------CeEEEEEcCCCcEEEe
Q 003271 772 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 803 (835)
Q Consensus 772 v~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~l 803 (835)
++. -++..+++|+.+ ..|.+||+.+.+...+
T Consensus 249 ~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 222 245566666543 3688999988876644
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.05 E-value=0.094 Score=55.81 Aligned_cols=177 Identities=7% Similarity=-0.003 Sum_probs=108.8
Q ss_pred EEEEeCCCCEEEEEeCC--------------CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE--CC--CeE
Q 003271 560 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--AD--RTV 621 (835)
Q Consensus 560 sl~fSpdg~~Lasgs~D--------------g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs--~D--g~I 621 (835)
+--|+++|.+|+.+... ..|+..+++..+...... . . +..|++++.+|+-.. .+ ..|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence 34567888888777543 467777777665333221 1 1 235677888888776 33 455
Q ss_pred EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcC
Q 003271 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE 701 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~d 701 (835)
...+++... ...+..+.. ..|+++++.++.+......|++.++..+.....+.+.. ...+.|++++|+....+
T Consensus 132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~-~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNC-YKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCE-EEEEEEETTEEEEEEGG
T ss_pred EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCc-cceeeecCCEEEEEEcC
Confidence 555565433 344444432 34567788787776657789999988776555554433 34567999999887765
Q ss_pred C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003271 702 N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG 753 (835)
Q Consensus 702 g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~ 753 (835)
+ .|..-++..... ..+. ...+ ..|+|++..|+.+. .+.|..-++...
T Consensus 205 ~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 205 RDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp GTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 3 677777765543 2332 2233 34778888888765 346666666543
No 332
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.99 E-value=0.00019 Score=86.50 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.4
Q ss_pred CCeEEEEEc
Q 003271 576 DKKAVLWCT 584 (835)
Q Consensus 576 Dg~I~VWd~ 584 (835)
+|...+|..
T Consensus 487 ~G~AI~y~~ 495 (727)
T 4b8c_D 487 DGCCIFFKR 495 (727)
T ss_dssp CCCEEEC--
T ss_pred ccEEEEEEc
Confidence 444445443
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.90 E-value=0.071 Score=56.46 Aligned_cols=209 Identities=11% Similarity=0.009 Sum_probs=103.9
Q ss_pred EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-----C------CcEEEEECCCCeeeeEe
Q 003271 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 679 (835)
Q Consensus 611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~-----D------g~I~iwDl~s~~~~~~~ 679 (835)
+++.|+ ..+.+||..+.+.....+..............++ .+++.|+. . ..+.+||+.+.+....-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344454 5699999998765332222111222222333344 46666663 1 13788999887653321
Q ss_pred e--cC--ceEEEEecCCCEEEEEEcC--------CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe--C--
Q 003271 680 K--SG--ATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS--D-- 742 (835)
Q Consensus 680 ~--~~--i~~l~fsp~~~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs--D-- 742 (835)
. .+ ...++. -++..++.|+.+ ..+.+||..+.+-...-.. ....-.+++. -++++++.|+ +
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 1 11 111222 244555555532 4689999988653321111 1111122222 3455666555 2
Q ss_pred ---CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEEeccCCC--CeeE
Q 003271 743 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVSS 812 (835)
Q Consensus 743 ---g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~~--~V~~ 812 (835)
..+.+||+.+..- ..+..+.........+.+ ++..+++|+.++ .+.+||+.+.+...+..... .-.+
T Consensus 162 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp CBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred cccceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 3789999887521 111111111111122222 566677777654 68999999987765542211 1112
Q ss_pred EEEeCCCCEEEEEECC
Q 003271 813 LAASTVNGMVASASHD 828 (835)
Q Consensus 813 la~spdg~~LaSgs~D 828 (835)
++. -++++++.|+.+
T Consensus 239 ~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEE-ETTEEEEEEEEE
T ss_pred EEE-ECCEEEEECCcc
Confidence 222 356777877764
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.89 E-value=0.037 Score=61.23 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=90.0
Q ss_pred cCCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC-c--------ceEEEeec--
Q 003271 700 IENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-G--------ECIHELSC-- 764 (835)
Q Consensus 700 ~dg~I~IwDl~t~~~i~~l~~h----~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~-~--------~~i~~l~~-- 764 (835)
.++.|+.-++......+.+... -..|..+..+|+|++||..++..|.|..+..+.. . ...+.+..
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 3467777776643323333221 2367889999999999999999999999984321 0 11223322
Q ss_pred ----CCCceEEEEEeCCC---CEEEEEEcCCeEEEEEcCCCc--EE---------EeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 765 ----TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 765 ----~~~~V~sv~fspdg---~~L~sgs~dg~I~IwDl~~~~--~~---------~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
....|..+.|||-+ ..|++-..|+.|++||+.... +. ........|.+++|..++-.|...+
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~ 198 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN 198 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence 24679999999964 689999999999999997622 11 1222336789999999776666544
Q ss_pred --CCCcEE
Q 003271 827 --HDKCVK 832 (835)
Q Consensus 827 --~DG~V~ 832 (835)
.+|.|+
T Consensus 199 ~t~~GDIY 206 (452)
T 3pbp_A 199 TTEGGDIF 206 (452)
T ss_dssp CTTSCEEE
T ss_pred cCCCCCEE
Confidence 777775
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.86 E-value=0.023 Score=61.42 Aligned_cols=229 Identities=9% Similarity=-0.061 Sum_probs=111.5
Q ss_pred CCCEEEEEeC-CCeEEEEEcCC--C--eEEEEec-cCCCCeEEEEECCCCCEEEEEEC-C---------CeEEEEecCCC
Q 003271 566 DGKLLATGGH-DKKAVLWCTES--F--TVKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 629 (835)
Q Consensus 566 dg~~Lasgs~-Dg~I~VWd~~t--~--~~i~~l~-~h~~~V~sv~fspdg~~Latgs~-D---------g~I~IWDl~t~ 629 (835)
++++++.|+. ...+.+||..+ . ..+..+. .....-.++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5666677664 35688999863 2 2222222 11112222333 5667777765 2 46889998876
Q ss_pred CceeEEeec-CCCCeEEEEEcCCCCcEEEEEeCC---------------------------------------CcEEEEE
Q 003271 630 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 669 (835)
Q Consensus 630 ~~~~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~D---------------------------------------g~I~iwD 669 (835)
......... ....-.+++. .+ ..+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 532111111 1111112222 23 4577777654 5799999
Q ss_pred CCCCeeeeEeecC----c-eEEEEecCCCEEEEEEc------CCcEEEEEC--CCCeEEE--EEcCCCCCeEEEEEcCCC
Q 003271 670 INNGSCAGVFKSG----A-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTSG 734 (835)
Q Consensus 670 l~s~~~~~~~~~~----i-~~l~fsp~~~~ll~~s~------dg~I~IwDl--~t~~~i~--~l~~h~~~I~sl~fspdg 734 (835)
+.+.+....-..+ . ..++. .++..+++|+. ...+.+||+ .+.+-.. .+........+.+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 9887654432211 1 22222 24445555543 346778887 4333221 111111111111222355
Q ss_pred CEEEEEe-C----------------------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---
Q 003271 735 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 788 (835)
Q Consensus 735 ~~Lasgs-D----------------------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg--- 788 (835)
++++.|+ + ..+.+||+.+.. ...+..+........+ +.-++..+++|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCC
Confidence 6666655 2 257899988753 2333333322222222 234667778888653
Q ss_pred ---eEEEEEcCCCcEEE
Q 003271 789 ---TLELWNMTENKTLT 802 (835)
Q Consensus 789 ---~I~IwDl~~~~~~~ 802 (835)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 57778999888774
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.82 E-value=0.36 Score=54.36 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=60.8
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce-eEEeec------CCCCeEEEEEcCC---CCcEEEEEeC------
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------ 661 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~-~~~~~~------h~~~V~sl~fsp~---g~~ll~sgs~------ 661 (835)
...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999987776544457888876544421 111211 2345779999996 5556655542
Q ss_pred ------CCcEEEEECCCC--e-----eee-Eee----cCceEEEEecCCCEEEEEE
Q 003271 662 ------NSEIRYWSINNG--S-----CAG-VFK----SGATQMRFQPRLGRILAAA 699 (835)
Q Consensus 662 ------Dg~I~iwDl~s~--~-----~~~-~~~----~~i~~l~fsp~~~~ll~~s 699 (835)
...|..|+.... . .+. .+. .....++|.|++..+++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235666665432 1 111 122 2257799999987666644
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.79 E-value=0.11 Score=55.01 Aligned_cols=201 Identities=11% Similarity=0.048 Sum_probs=99.1
Q ss_pred eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC----CC-------cEEEEECCCCeeeeEe--ecC--ce
Q 003271 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVF--KSG--AT 684 (835)
Q Consensus 620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~----Dg-------~I~iwDl~s~~~~~~~--~~~--i~ 684 (835)
.+.+||..+.+....................+ +.+++.|+. ++ .+.+||..+.+....- ... ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 48899998776533222211112222223334 446666662 11 2788998877654321 111 11
Q ss_pred EEEEecCCCEEEEEEcC-------CcEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCCCEEEEEe--C-----CeEEEE
Q 003271 685 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW 748 (835)
Q Consensus 685 ~l~fsp~~~~ll~~s~d-------g~I~IwDl~t~~~i~~l~~h~~~I--~sl~fspdg~~Lasgs--D-----g~I~Iw 748 (835)
.++. .++..+++|+.+ ..+.+||..+.+-...-. ...+. .+++. .++++++.|+ + ..+.+|
T Consensus 104 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 104 GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 2222 245566666654 358889998765433211 11111 12222 3566666654 2 258999
Q ss_pred EcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCCC--eeEEEEeCCCCE
Q 003271 749 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLAASTVNGM 821 (835)
Q Consensus 749 Dl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~~--V~~la~spdg~~ 821 (835)
|+.+.. ...+..+...... .+++.. ++..+++|+.+ ..+.+||+.+.+...+...... -.+++ .-++++
T Consensus 181 d~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i 256 (318)
T 2woz_A 181 NPKKGD-WKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL 256 (318)
T ss_dssp ETTTTE-EEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred cCCCCE-EEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence 988752 1111111111111 222222 55666666643 3688999998887654322111 11222 235677
Q ss_pred EEEEECC
Q 003271 822 VASASHD 828 (835)
Q Consensus 822 LaSgs~D 828 (835)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7777754
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.13 Score=55.65 Aligned_cols=190 Identities=6% Similarity=-0.023 Sum_probs=104.0
Q ss_pred CEEEEEECCCeEEEEecCCCCceeEEeecC-CCCeEEEEEc--CCCCcEEEEE-eCCCcEEEEECCCCeeeeEeecC---
Q 003271 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFH--PSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKSG--- 682 (835)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fs--p~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~~~--- 682 (835)
.++++++.||.|.-+|..+++. +..+... ..++....-. +.+..+++.. ..||.|+.++..+|.....+..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788899999999999998875 3333322 1222221100 1122344443 57999999999988655444321
Q ss_pred -ceEEEEe-----------cCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC--CC-----eEEEEEc-----CCCCEEE
Q 003271 683 -ATQMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 738 (835)
Q Consensus 683 -i~~l~fs-----------p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--~~-----I~sl~fs-----pdg~~La 738 (835)
...+... ..++.+++++.++.++..|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1112211 156889999999999999999999999886421 10 1111111 1234565
Q ss_pred EEe-CCeEEEEEcCCCCCcc-eEEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE
Q 003271 739 SVS-DELVRVWSIGSGSKGE-CIHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 802 (835)
Q Consensus 739 sgs-Dg~I~IwDl~t~~~~~-~i~~l~~~~~~--V-~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~ 802 (835)
.+. +..|.+.+ +++.... .+......... + ..-.++.++.+ ++++.||.|..+|..+++.+-
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555 66777766 3442111 01111110000 0 00000123554 557888888888888777653
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.50 E-value=0.046 Score=57.81 Aligned_cols=211 Identities=7% Similarity=-0.005 Sum_probs=104.9
Q ss_pred CCCEEEEEECC----CeEEEEecCCCCceeEEeecCCC--CeEEEEEcCCCCcEEEEEeC----C-----CcEEEEECCC
Q 003271 608 SLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINN 672 (835)
Q Consensus 608 dg~~Latgs~D----g~I~IWDl~t~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~sgs~----D-----g~I~iwDl~s 672 (835)
++.+++.|+.+ ..+.+||..+... ..+..... .-.+++.. + +.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW--LRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeE--eECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 45566666532 3578888876553 22211111 11122222 2 456666664 2 4688999988
Q ss_pred CeeeeEee--cC--ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEe
Q 003271 673 GSCAGVFK--SG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 673 ~~~~~~~~--~~--i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~fspdg~~Lasgs 741 (835)
.+....-. .. ...++. .++..+++|+.+ ..+.+||..+.+-... +........++.+ ++.+++.|+
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence 76443221 11 112222 244555555533 4688999987654332 1111111122222 566666665
Q ss_pred -C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCCC-
Q 003271 742 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL- 809 (835)
Q Consensus 742 -D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~~- 809 (835)
+ ..+.+||+.+..- ..+..+.........+.+ ++..+++|+.+ ..|.+||+.+.+...+......
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 3 3689999877521 111111111111222233 56666666654 4799999999887654322111
Q ss_pred -eeEEEEeCCCCEEEEEECCC
Q 003271 810 -VSSLAASTVNGMVASASHDK 829 (835)
Q Consensus 810 -V~~la~spdg~~LaSgs~DG 829 (835)
-.+++. -++++++.|+.++
T Consensus 254 ~~~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 254 SALGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp BSCEEEE-ETTEEEEECCBCS
T ss_pred cceEEEE-ECCEEEEEcCcCC
Confidence 112222 2577788887553
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.40 E-value=0.99 Score=50.73 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=62.9
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEecc------CCCCeEEEEECCC---CCEEEEEEC------
Q 003271 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------ 617 (835)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l~~------h~~~V~sv~fspd---g~~Latgs~------ 617 (835)
-...++|+|.|||+++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345789999999997776544457998886555432 33321 2456779999995 555554432
Q ss_pred -------CCeEEEEecCCCC-------ceeEEee-cCCCCeEEEEEcCCCCcEEEEEe
Q 003271 618 -------DRTVRVWDTENPD-------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 618 -------Dg~I~IWDl~t~~-------~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs 660 (835)
...|.-|++.... ..+..+. ........|+|.|+|..++.+|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 1111121 11234789999999875554443
No 341
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.40 E-value=0.2 Score=53.81 Aligned_cols=183 Identities=10% Similarity=-0.014 Sum_probs=90.1
Q ss_pred CCCEEEEEeC-C---------CeEEEEEcCCCeEEEEeccC-C--CCeEEEEECCCCCEEEEEECC--------------
Q 003271 566 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLEEH-T--QWITDVRFSPSLSRLATSSAD-------------- 618 (835)
Q Consensus 566 dg~~Lasgs~-D---------g~I~VWd~~t~~~i~~l~~h-~--~~V~sv~fspdg~~Latgs~D-------------- 618 (835)
++++++.|+. + ..+.+||..+.+-...-... . ....++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5667777765 2 46889998876543222111 1 1122222 467788888765
Q ss_pred -------------------------CeEEEEecCCCCceeEEeecCCCCe-EEEEEcCCCCcEEEEEeC------CCcEE
Q 003271 619 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 666 (835)
Q Consensus 619 -------------------------g~I~IWDl~t~~~~~~~~~~h~~~V-~sl~fsp~g~~ll~sgs~------Dg~I~ 666 (835)
..+.+||+.+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 4789999987654222111111111 233333 2446666653 34677
Q ss_pred EEEC--CCCeeeeE--eecC---ceEEEEecCCCEEEEEEcC----------------------CcEEEEECCCC--eEE
Q 003271 667 YWSI--NNGSCAGV--FKSG---ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 715 (835)
Q Consensus 667 iwDl--~s~~~~~~--~~~~---i~~l~fsp~~~~ll~~s~d----------------------g~I~IwDl~t~--~~i 715 (835)
+||+ .+.+.... +..+ ....+...++..+++|+.+ ..+.+||+.+. +.+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 8887 44443322 1111 1222333445556666532 25788998865 333
Q ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCC
Q 003271 716 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 754 (835)
Q Consensus 716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg------~I~IwDl~t~~ 754 (835)
..+........++. -++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 33332222222222 3566666666 32 46666887763
No 342
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.37 E-value=0.0031 Score=71.18 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=6.3
Q ss_pred hhhHHHHHHHhhh
Q 003271 53 FEWWSVFWDIFIA 65 (835)
Q Consensus 53 ~eww~~Fwdif~a 65 (835)
-+.|.++.+.+..
T Consensus 337 ~~~~~~~~~~~~~ 349 (449)
T 3iot_A 337 SAFWYAVRTAVIN 349 (449)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555554443
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.096 Score=56.63 Aligned_cols=184 Identities=8% Similarity=0.039 Sum_probs=102.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEeccC-CCCeEEEEEC--C-CCCEEEEE-ECCCeEEEEecCCCCceeEEeec---C
Q 003271 568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H 639 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fs--p-dg~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~---h 639 (835)
.++++++.||.|.-+|.++|+.+.+++.. ..++....-. + ++..++.. +.||.|..++..++......-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 37888999999999999999999888654 1222221100 1 22333333 57999999998876432111110 1
Q ss_pred CCCeEE---EEE-cC---CCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce----------EEEEe-----cCCCEEEE
Q 003271 640 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT----------QMRFQ-----PRLGRILA 697 (835)
Q Consensus 640 ~~~V~s---l~f-sp---~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~----------~l~fs-----p~~~~ll~ 697 (835)
..++.. ..+ .+ .....+++|+.+|.+...|+.+|+.+..+..... |.+.. ..++.++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 00 0134677899999999999999999988874421 11111 12467777
Q ss_pred EEcCCcEEEEECCCCeEEEEEc-----CCCCC--e-EEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271 698 AAIENYISILDVETQVCRLKLQ-----GHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSG 753 (835)
Q Consensus 698 ~s~dg~I~IwDl~t~~~i~~l~-----~h~~~--I-~sl~fspdg~~LasgsDg~I~IwDl~t~ 753 (835)
+..+..+.+.+ ++++ +..+. ..... + .+-..+.|+.++++..||.|..+|..++
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G 232 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFR 232 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTC
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCC
Confidence 77777777776 4443 22111 10000 0 0000112466666555888888888776
No 344
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.12 E-value=2.1 Score=46.66 Aligned_cols=254 Identities=6% Similarity=-0.045 Sum_probs=119.0
Q ss_pred CCCEEEEEEeC--CCCEEEEEeCCC----eEEEEEcCCCeEEEEecc--------------CCCCeEEEEECC-C-CCEE
Q 003271 555 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 612 (835)
Q Consensus 555 ~~~V~sl~fSp--dg~~Lasgs~Dg----~I~VWd~~t~~~i~~l~~--------------h~~~V~sv~fsp-d-g~~L 612 (835)
...|.+|+++| ++.++| ++..| .|...+ +.++....+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 35699999998 454444 44444 444332 22322222211 112578899987 2 4556
Q ss_pred EEEECCCeEEEEecCCCCceeEEeec-------------------CCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCC
Q 003271 613 ATSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 672 (835)
Q Consensus 613 atgs~Dg~I~IWDl~t~~~~~~~~~~-------------------h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s 672 (835)
+++...+.|...+ .+......+.. ....|.+|.++|.. ..+++ +..++.|...+- .
T Consensus 132 ~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v-g~~~ggl~~s~D-g 207 (394)
T 3b7f_A 132 YAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI-GMSSGGVFESTD-A 207 (394)
T ss_dssp EEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE-EEETBEEEEESS-T
T ss_pred EEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE-EECCCCEEEECC-C
Confidence 6665566554443 22221222211 12357899998843 33444 333444443322 1
Q ss_pred CeeeeEee----------------cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC--CC---CCeEEEEE
Q 003271 673 GSCAGVFK----------------SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW 730 (835)
Q Consensus 673 ~~~~~~~~----------------~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~---~~I~sl~f 730 (835)
++.-..+. ..+..+.+++.. +.++++.. +.|+..+-. ++.-..+.. .. ..+.++.+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 22111111 136778888863 66766654 445555432 222222221 11 34567888
Q ss_pred cCC--CCEEEEEe-----------CCeEEEEEcCCC-CCcceEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003271 731 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL 790 (835)
Q Consensus 731 spd--g~~Lasgs-----------Dg~I~IwDl~t~-~~~~~i~~-l~~~~~----~V~sv~fspdg-~~L~sgs~dg~I 790 (835)
+|. +.++++.. ++...||....+ .....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 753 44444431 233456655443 22122211 111000 11357787753 457777666665
Q ss_pred EEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271 791 ELWNMTENKTLTLSAHDKLVSSLAAS 816 (835)
Q Consensus 791 ~IwDl~~~~~~~l~~h~~~V~~la~s 816 (835)
++-+-.......+..+-..|.+|+|.
T Consensus 366 ~~S~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred EEECCCCCCceEcccCCCCeeEEEEe
Confidence 54332222233444444567777764
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.10 E-value=0.23 Score=62.54 Aligned_cols=216 Identities=10% Similarity=0.181 Sum_probs=129.1
Q ss_pred CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (835)
Q Consensus 576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l 655 (835)
...|.|.|+.++..+.+-. -..-+.-.+|..+.||.-. ..++.|+|+++... +..+.- ..+|.-=.|-.... +
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~-l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V 119 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCe-e
Confidence 3478888988765442211 1112344677777766654 67899999998654 333332 34566666765533 3
Q ss_pred EEEEeCCCcEEEEECCCC-eeeeEee-------cCceEEEEecCCCEEEEEEc-------CCcEEEEECCCCeEEEEEcC
Q 003271 656 LCSCDNNSEIRYWSINNG-SCAGVFK-------SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 720 (835)
Q Consensus 656 l~sgs~Dg~I~iwDl~s~-~~~~~~~-------~~i~~l~fsp~~~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~ 720 (835)
.+++ +..|+.|++... .+++.|. ..+...+.+++.++++..+- .|.+.+|.++.+. ...+.|
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg 196 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence 3233 568999999642 2333332 23566677888888776553 4778888887542 233455
Q ss_pred CCCCeEEEEEc--C-CCCEEEEEe----CCeEEEEEcCCC---CC--c-ceEEEee---cCCCceEEEEEeCCCCEEEEE
Q 003271 721 HKNQVHSVCWN--T-SGEYLASVS----DELVRVWSIGSG---SK--G-ECIHELS---CTGNKFHSCVFHPTFPSLLVI 784 (835)
Q Consensus 721 h~~~I~sl~fs--p-dg~~Lasgs----Dg~I~IwDl~t~---~~--~-~~i~~l~---~~~~~V~sv~fspdg~~L~sg 784 (835)
|......+... + ...+++.+. .+.+.|.++... .. . +.+..+. ....-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 55444333332 1 122333333 268999998653 10 0 1111111 123345677888888899999
Q ss_pred EcCCeEEEEEcCCCcEE
Q 003271 785 GCYETLELWNMTENKTL 801 (835)
Q Consensus 785 s~dg~I~IwDl~~~~~~ 801 (835)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999876
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.90 E-value=2.6 Score=45.90 Aligned_cols=257 Identities=8% Similarity=-0.024 Sum_probs=120.7
Q ss_pred CEEEEEeCCCeEEEEEcCC----CeEEEEeccCCCCeEEEEECC-CCCEEEEEECCC----eEEEEecCCCCceeEEeec
Q 003271 568 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFTG 638 (835)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t----~~~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg----~I~IWDl~t~~~~~~~~~~ 638 (835)
..|++|+..| +.+++... .+..... .....|.+|++.| +...|+++...| .|... ..+......+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 3667777766 55555432 2222211 2245699999998 333444444444 34333 222211222111
Q ss_pred --------------CCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEee----------------------c
Q 003271 639 --------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------S 681 (835)
Q Consensus 639 --------------h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------------------~ 681 (835)
....|.+|++.|.+ ...++.+...+.|...+-. ++.-..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCC
Confidence 11247789998732 2234444445555544322 22111111 1
Q ss_pred CceEEEEecC-CCEEEEEEcCCcEEEEECCC--CeEEEE-EcC-C--------CCCeEEEEEcCC-CCEEEEEeCCeEEE
Q 003271 682 GATQMRFQPR-LGRILAAAIENYISILDVET--QVCRLK-LQG-H--------KNQVHSVCWNTS-GEYLASVSDELVRV 747 (835)
Q Consensus 682 ~i~~l~fsp~-~~~ll~~s~dg~I~IwDl~t--~~~i~~-l~~-h--------~~~I~sl~fspd-g~~LasgsDg~I~I 747 (835)
.+..+.++|. .+.++++..++.|...+-.. .+.+.. ... + ...+.+|.+++. ...|+++.++.|..
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~ 257 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYR 257 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEE
Confidence 2567888874 45667776665555543221 121110 000 0 124889999886 35666666555555
Q ss_pred EEcCCCCCcceEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEEcCC-CcEE-Eec-cCC
Q 003271 748 WSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS-AHD 807 (835)
Q Consensus 748 wDl~t~~~~~~i~~l~~--~~---~~V~sv~fspd-g~~L~sgs~-----------dg~I~IwDl~~-~~~~-~l~-~h~ 807 (835)
.+-. + .....+.. .. ..+..++++|. ...|+++.. ++...||...+ ++.. .+. +-.
T Consensus 258 s~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 258 MDRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred eCCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 5422 2 22222211 11 33567788763 344555542 23345565444 3322 221 111
Q ss_pred --C-----CeeEEEEeCCC-CEEEEEECCCcEEE
Q 003271 808 --K-----LVSSLAASTVN-GMVASASHDKCVKI 833 (835)
Q Consensus 808 --~-----~V~~la~spdg-~~LaSgs~DG~V~I 833 (835)
. ....++++|.. ..|+.++.++.|.+
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 0 12357887743 44666666665543
No 347
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.86 E-value=0.82 Score=46.09 Aligned_cols=171 Identities=13% Similarity=0.027 Sum_probs=95.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCe------eeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE------EE
Q 003271 653 EDLLCSCDNNSEIRYWSINNGS------CAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 716 (835)
Q Consensus 653 ~~ll~sgs~Dg~I~iwDl~s~~------~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~------i~ 716 (835)
+.+|++...| +|+.=....+. ....+. ..+..++|+|++. |+++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3456666666 66655554433 111222 2478999999766 4444 778888877755111 11
Q ss_pred EEc-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcce----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271 717 KLQ-GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 791 (835)
Q Consensus 717 ~l~-~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~----i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~ 791 (835)
.+- .--....++.|.++|.+.++ +||.|+-++-.+.....- ...-.+.-..+..+.|.|+|... ++. ++.++
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~-dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH-GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE-TTEEE
T ss_pred EecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEE-EEe-CCcEE
Confidence 110 00111468899999998888 889888887544321111 11111122567999999999844 444 77765
Q ss_pred EEEcCCCcE-------EEec-cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 792 LWNMTENKT-------LTLS-AHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 792 IwDl~~~~~-------~~l~-~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
-........ ..+. ..-..-..+.|.+++.+++.. +|.+
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 443332210 1111 223344557788888766655 6654
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.80 E-value=0.19 Score=63.27 Aligned_cols=233 Identities=12% Similarity=0.165 Sum_probs=138.6
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC-
Q 003271 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 639 (835)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h- 639 (835)
.-.+|..+.||.=. ..++.|||+++...++.+.-. ..|.-=.|-.+. .|+..+ +..|+-|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34566666666554 679999999988877776543 456555665443 344333 4579999998655555555555
Q ss_pred ---CCCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCceE---EEE--ecCCCEEEEEEc----C
Q 003271 640 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGATQ---MRF--QPRLGRILAAAI----E 701 (835)
Q Consensus 640 ---~~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i~~---l~f--sp~~~~ll~~s~----d 701 (835)
...|..-..+++.+.++++|- -.|.+.+|.++.+.. ..+.++..+ +.+ .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888888887764 347888888875432 112222111 111 111122333222 2
Q ss_pred CcEEEEECCCC---eE------EEEEcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271 702 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 768 (835)
Q Consensus 702 g~I~IwDl~t~---~~------i~~l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~ 768 (835)
+.++|.++... .. +..+.. ...-..++..++.-.+++..+ -|.|.+||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 78888888543 11 111111 122234566677666666666 899999999998 566555555555
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 769 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 769 V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
|...+.+....-+++....|.|.-..+++..++
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 555555544444666667776666666655544
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.78 E-value=0.3 Score=58.19 Aligned_cols=219 Identities=5% Similarity=0.018 Sum_probs=109.6
Q ss_pred CCCEEEEEECC----CeEEEEecCCCCceeEEee------cCCCCeEEEEEcC-CCCcEEEEEeCC------CcEEEEEC
Q 003271 608 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWSI 670 (835)
Q Consensus 608 dg~~Latgs~D----g~I~IWDl~t~~~~~~~~~------~h~~~V~sl~fsp-~g~~ll~sgs~D------g~I~iwDl 670 (835)
++.+++.|+.+ ..+.+||..+......... .....-.+++..+ + ..+++.|+.+ ..+.+||+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeC
Confidence 34444444432 3477788776654222201 0111112333333 4 3466666643 35889999
Q ss_pred CCCeeeeEe--ecC--ceEEEEecCCCEEEEEEcCC--cEEEEECCCCeEEEEEc-----CCCCCeEEEEEcCC-CCEEE
Q 003271 671 NNGSCAGVF--KSG--ATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA 738 (835)
Q Consensus 671 ~s~~~~~~~--~~~--i~~l~fsp~~~~ll~~s~dg--~I~IwDl~t~~~i~~l~-----~h~~~I~sl~fspd-g~~La 738 (835)
.+.+....- ..+ ..+.+...++..++.|+.++ .+.+||..+..-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 886544332 111 22233324677777777654 79999998875433211 11122233555555 56666
Q ss_pred EEe---C-----CeEEEEEcCCCCC-----cceEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CeEEEEEcCC
Q 003271 739 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------ETLELWNMTE 797 (835)
Q Consensus 739 sgs---D-----g~I~IwDl~t~~~-----~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d--------g~I~IwDl~~ 797 (835)
.|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+.+ ..|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 665 2 3689999988741 11222211111122233334436666777642 4699999998
Q ss_pred CcEEEeccCCC--------Ce-eEEEEeCCCCEEEEEEC
Q 003271 798 NKTLTLSAHDK--------LV-SSLAASTVNGMVASASH 827 (835)
Q Consensus 798 ~~~~~l~~h~~--------~V-~~la~spdg~~LaSgs~ 827 (835)
.+.....-... .+ .+++...++++++.||.
T Consensus 636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 87763221100 00 23333455577777764
No 350
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.76 E-value=0.66 Score=51.34 Aligned_cols=140 Identities=11% Similarity=0.105 Sum_probs=89.2
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-------CceEEEEecCCCEEEEEEcCCcEEEEECCCCe---------
Q 003271 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-------GATQMRFQPRLGRILAAAIENYISILDVETQV--------- 713 (835)
Q Consensus 650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--------- 713 (835)
.++..+++.- ++.||.-++......+.++. .+..+..+|+|.+++.. .+..|.|..+..+.
T Consensus 30 ~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccc
Confidence 3444455443 56788777764433333322 47789999998877766 45688888877221
Q ss_pred ---EEEEEcC------CCCCeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceE--------EEeecCCCceEEE
Q 003271 714 ---CRLKLQG------HKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHSC 772 (835)
Q Consensus 714 ---~i~~l~~------h~~~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i--------~~l~~~~~~V~sv 772 (835)
..+.+.- ...+|..+.|+|-+ ..|++-. |+.|++||+..... +.. ..+......|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEEE
Confidence 1122221 25679999999953 4555555 99999999987322 122 1112233678999
Q ss_pred EEeCCCCEEEEEE--cCCeEEEE
Q 003271 773 VFHPTFPSLLVIG--CYETLELW 793 (835)
Q Consensus 773 ~fspdg~~L~sgs--~dg~I~Iw 793 (835)
+|..++-.|++.+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999988888866 67777644
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.74 E-value=0.74 Score=54.87 Aligned_cols=237 Identities=8% Similarity=-0.004 Sum_probs=122.7
Q ss_pred EEE-EeCCCCEEEEEe-----CCCeEEEEEcCCCeEEE-Eec-cCCC------CeEEEEECCCCCEEEEEE---------
Q 003271 560 SCH-FSPDGKLLATGG-----HDKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS--------- 616 (835)
Q Consensus 560 sl~-fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~i~-~l~-~h~~------~V~sv~fspdg~~Latgs--------- 616 (835)
.+. ++||+++++.+- .-..|+++|+.+++.+. .+. .-.. ....++|..+ ..++.+.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence 344 889999876642 22479999999998763 111 0000 1133477633 3444332
Q ss_pred --CCCeEEEEecCCCCc-eeEEeecCCCCe-EEEEEcCCCCc----EEEEEe---CCCcEEEEECCC--CeeeeEeecCc
Q 003271 617 --ADRTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCD---NNSEIRYWSINN--GSCAGVFKSGA 683 (835)
Q Consensus 617 --~Dg~I~IWDl~t~~~-~~~~~~~h~~~V-~sl~fsp~g~~----ll~sgs---~Dg~I~iwDl~s--~~~~~~~~~~i 683 (835)
....|+.|.+-+... ....+.+....+ .+...+.++.. ++++.+ ....+++.|... ++........-
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD 291 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence 125689998876532 234444433333 34455666663 455543 224567777653 33222222112
Q ss_pred eEEEEecCCCEEEEE----------EcCCcEEEEECCCCe--------EEEEEc-CCCCCeEEEEEcCCCCEEEEEe-CC
Q 003271 684 TQMRFQPRLGRILAA----------AIENYISILDVETQV--------CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DE 743 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~----------s~dg~I~IwDl~t~~--------~i~~l~-~h~~~I~sl~fspdg~~Lasgs-Dg 743 (835)
..+.....+..++.. ...+.|.++|+.++. ....+. .....+..+.|..+ .++++.. ++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~ 370 (711)
T 4hvt_A 292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV 370 (711)
T ss_dssp CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT
T ss_pred ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC
Confidence 222333443333321 235678889887631 111232 23446778888876 4444444 66
Q ss_pred --eEEEEEcCCCCCcceEEE-eecC-CCceEEEEEeCCCCEEEEE-EcC---CeEEEEEcCCCcEE
Q 003271 744 --LVRVWSIGSGSKGECIHE-LSCT-GNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 801 (835)
Q Consensus 744 --~I~IwDl~t~~~~~~i~~-l~~~-~~~V~sv~fspdg~~L~sg-s~d---g~I~IwDl~~~~~~ 801 (835)
.|.++|+.++.. .+.. +... ...+..+.+.+++..+++. ++. ..++.+|+. ++..
T Consensus 371 ~~~l~~~~~~~g~~--~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 371 VAKVVTFTLENEQW--TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEEEECEETTEE--CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEEEECCCCce--EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 577777765420 1122 2211 2456666666776554443 332 378888887 5443
No 352
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.36 E-value=0.47 Score=56.50 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=98.9
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCCeEEEEe-c------cCCCCeEEEEECC-CCCEEEEEECC------CeEEEEec
Q 003271 565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL-E------EHTQWITDVRFSP-SLSRLATSSAD------RTVRVWDT 626 (835)
Q Consensus 565 pdg~~Lasgs~D----g~I~VWd~~t~~~i~~l-~------~h~~~V~sv~fsp-dg~~Latgs~D------g~I~IWDl 626 (835)
.++.+++.||.+ ..+.+||..+.+-...- . .....-.+++... ++.+++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 46888998876543322 1 1111112333333 67777777754 35788998
Q ss_pred CCCCceeEEeecCC--CCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEee--------cCceEEEEecC-CC
Q 003271 627 ENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK--------SGATQMRFQPR-LG 693 (835)
Q Consensus 627 ~t~~~~~~~~~~h~--~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~--------~~i~~l~fsp~-~~ 693 (835)
.+... ....... ..-.+++...++ .+++.|+.++ .+.+||+.+.+....-. .....+.+... +.
T Consensus 476 ~t~~W--~~~~~~p~~R~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTREW--SMIKSLSHTRFRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTEE--EECCCCSBCCBSCEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCcE--EECCCCCCCcccceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 87543 2221111 111223332343 4666776544 79999998876543321 11233555655 44
Q ss_pred EEEEEEc--C-----CcEEEEECCCCe------EE--EEEcCCCCCeEEEEEcCCCCEEEEEe-C--------CeEEEEE
Q 003271 694 RILAAAI--E-----NYISILDVETQV------CR--LKLQGHKNQVHSVCWNTSGEYLASVS-D--------ELVRVWS 749 (835)
Q Consensus 694 ~ll~~s~--d-----g~I~IwDl~t~~------~i--~~l~~h~~~I~sl~fspdg~~Lasgs-D--------g~I~IwD 749 (835)
.++.|+. + +.+.+||+.+.. -. .........-.+++...++++++.|+ + ..|.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 5555654 2 458999998766 11 11111111112333334366666665 2 3589999
Q ss_pred cCCC
Q 003271 750 IGSG 753 (835)
Q Consensus 750 l~t~ 753 (835)
+.+.
T Consensus 633 ~~t~ 636 (695)
T 2zwa_A 633 PLSE 636 (695)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9876
No 353
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.25 E-value=1.7 Score=43.87 Aligned_cols=175 Identities=11% Similarity=-0.045 Sum_probs=96.4
Q ss_pred CCCEEEEEECCCeEEEEecCCCCc----eeEEeecC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee------
Q 003271 608 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------ 675 (835)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~t~~~----~~~~~~~h--~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~------ 675 (835)
...+|++...| +|++=....... ......+. =..+.+++|+|++. +.+. .+|.++-.+..+...
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 34567777777 655544443331 01111222 24678999999876 4444 578887777655221
Q ss_pred eeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE-------EEEEcCCCCCeEEEEEcCCCCEEEEEeCCe
Q 003271 676 AGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDEL 744 (835)
Q Consensus 676 ~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~-------i~~l~~h~~~I~sl~fspdg~~LasgsDg~ 744 (835)
...+. .....+.|.+++...++ .||.|+-++-.+... ...-..--..+..|.|.|+|.+.++. |+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 11121 11478889999777666 669988887643111 11111112467999999999999888 888
Q ss_pred EEEEEcCCCCCc---ceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271 745 VRVWSIGSGSKG---ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 791 (835)
Q Consensus 745 I~IwDl~t~~~~---~~i~~l~-~~~~~V~sv~fspdg~~L~sgs~dg~I~ 791 (835)
++-....+.... .....+. ..-....-+.|.+++...++. ++.|+
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 654333221100 0111111 222234446688888754444 66443
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.96 E-value=6.1 Score=44.35 Aligned_cols=229 Identities=10% Similarity=0.023 Sum_probs=114.0
Q ss_pred CEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCC---eEEEEecc---------CCCCeEEEEECCC----CCEEEEEEC--
Q 003271 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLEE---------HTQWITDVRFSPS----LSRLATSSA-- 617 (835)
Q Consensus 557 ~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~---~~i~~l~~---------h~~~V~sv~fspd----g~~Latgs~-- 617 (835)
.-+.|+|.|||. .|+++...|.|++++.+.. ..+..+.. .......|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 4555677899999975432 12222211 1356889999996 433333332
Q ss_pred C----------CeEEEEecCCC---------CceeEEee--cCCCCeEEEEEcCCCCcEEEEEeCC--------------
Q 003271 618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN-------------- 662 (835)
Q Consensus 618 D----------g~I~IWDl~t~---------~~~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~D-------------- 662 (835)
+ ..|.-|.+... ...+..+. ........|.|.|||..+|.+|+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 14444665421 01121121 1123467899999987555554321
Q ss_pred --CcEEEEECCCC------e-------------eeeEeec---CceEEEEecCC-----C-EEEEEEcCC----cEEEEE
Q 003271 663 --SEIRYWSINNG------S-------------CAGVFKS---GATQMRFQPRL-----G-RILAAAIEN----YISILD 708 (835)
Q Consensus 663 --g~I~iwDl~s~------~-------------~~~~~~~---~i~~l~fsp~~-----~-~ll~~s~dg----~I~IwD 708 (835)
|.|.-.|.... . ....+.. ....++|+|.. . +++++...+ .-.|..
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 33444555431 0 0111221 25568899873 2 344332212 123333
Q ss_pred CCCC------eEEEEEcCCC-CCeEEEEEcC-------CCCEEEEEeCCeEEEEEcCCCCCcceEEEe-e--------cC
Q 003271 709 VETQ------VCRLKLQGHK-NQVHSVCWNT-------SGEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT 765 (835)
Q Consensus 709 l~t~------~~i~~l~~h~-~~I~sl~fsp-------dg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~--------~~ 765 (835)
+..+ .++..+..|. ..+..+.|-. .|.+|++.-.+.|....+...........+ . ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 3222 2333343221 4677777743 234555443666665555443211111112 1 12
Q ss_pred CCceEEEEEeCCCCEEEEEE
Q 003271 766 GNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 766 ~~~V~sv~fspdg~~L~sgs 785 (835)
...+..+.+.|+|..+++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999998766665
No 355
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.35 E-value=0.012 Score=66.27 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=7.4
Q ss_pred hHHHHHHHhhhhccc
Q 003271 55 WWSVFWDIFIARTNE 69 (835)
Q Consensus 55 ww~~Fwdif~a~~~~ 69 (835)
.|..+|+++......
T Consensus 335 ~~~~~~~~~~~~~~~ 349 (449)
T 3iot_A 335 QMSAFWYAVRTAVIN 349 (449)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 345555555544443
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.84 E-value=10 Score=42.41 Aligned_cols=227 Identities=13% Similarity=0.075 Sum_probs=115.5
Q ss_pred CCeEEEEECCCCC-EEEEEECCCeEEEEecCCCC--ceeEEe----e-----cCCCCeEEEEEcCC---CCcEEEEEeC-
Q 003271 598 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTF----T-----GHSTTVMSLDFHPS---KEDLLCSCDN- 661 (835)
Q Consensus 598 ~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~--~~~~~~----~-----~h~~~V~sl~fsp~---g~~ll~sgs~- 661 (835)
..-+.|+|.|++. .|+++...|.|++++..... ..+..+ . ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999986 56666789999999754321 111111 1 11356789999996 2334444332
Q ss_pred -C----------CcEEEEECCCC----------eeeeEee-----cCceEEEEecCCCEEEEEEcCC-------------
Q 003271 662 -N----------SEIRYWSINNG----------SCAGVFK-----SGATQMRFQPRLGRILAAAIEN------------- 702 (835)
Q Consensus 662 -D----------g~I~iwDl~s~----------~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg------------- 702 (835)
+ ..|.-|.+..+ +.+..+. .....++|.|++..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555665421 2222222 2256799999987666655432
Q ss_pred ----cEEEEECCCC---------------------eEEEEEcCCCCCeEEEEEcCC-----CCE-EEEEeC-C----eEE
Q 003271 703 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR 746 (835)
Q Consensus 703 ----~I~IwDl~t~---------------------~~i~~l~~h~~~I~sl~fspd-----g~~-LasgsD-g----~I~ 746 (835)
.|.-+|.... ..+.. .+|.. ...++|+|. |.+ ++.+.. + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333333321 00111 12222 346889986 443 433321 2 233
Q ss_pred EEEcCCCCC---cceEEEeecCC-CceEEEEEeCCCC------EEEEEEcCCeEEEEEcCCCc----EEEec--------
Q 003271 747 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS-------- 804 (835)
Q Consensus 747 IwDl~t~~~---~~~i~~l~~~~-~~V~sv~fspdg~------~L~sgs~dg~I~IwDl~~~~----~~~l~-------- 804 (835)
|..+..+.. ...+..+..+. ..+..+.|-.... .++++...+.|....++... ...+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433321 12344444321 4667777753321 25666666777666665432 11221
Q ss_pred -cCCCCeeEEEEeCCCCEEEEEE
Q 003271 805 -AHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 805 -~h~~~V~~la~spdg~~LaSgs 826 (835)
.....+.++.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999887765
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.80 E-value=2.8 Score=47.88 Aligned_cols=184 Identities=15% Similarity=0.159 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCeeeeEeec----CceEEEEe--cCCCEEEEEEc-------CCcE------------E
Q 003271 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----GATQMRFQ--PRLGRILAAAI-------ENYI------------S 705 (835)
Q Consensus 651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----~i~~l~fs--p~~~~ll~~s~-------dg~I------------~ 705 (835)
||+++++---.+..|...+++..++-..+.. .+..++|. |+.+++++++. ||.. .
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~ 220 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN 220 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence 4666666555678899999999888777663 36677776 78888888875 2221 1
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---------------CeEEEEEcCC-------CCC--cc--e
Q 003271 706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---------------ELVRVWSIGS-------GSK--GE--C 758 (835)
Q Consensus 706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---------------g~I~IwDl~t-------~~~--~~--~ 758 (835)
..|..+.+....+.- ......+...++|.+.++.+ + ..|.++++.. ++. .. -
T Consensus 221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 123333322222211 12333445567777777665 2 1466666531 100 00 0
Q ss_pred EEEeec---------------CCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCC------CcE-------EEeccCCCC
Q 003271 759 IHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTE------NKT-------LTLSAHDKL 809 (835)
Q Consensus 759 i~~l~~---------------~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~------~~~-------~~l~~h~~~ 809 (835)
+..+.+ .......|.++|||+++++++.- .+|.|+|++. .++ .....-.-.
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG 379 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG 379 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence 111111 12345668899999999988874 4999999874 221 222234456
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271 810 VSSLAASTVNGMVASASHDKCVKIWK 835 (835)
Q Consensus 810 V~~la~spdg~~LaSgs~DG~V~IWd 835 (835)
....+|.++|....|.--|..|.-|+
T Consensus 380 PlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 380 PLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ccEEEECCCCceEeeeeecceEEEEe
Confidence 78899999996556666899999985
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.33 E-value=1.9 Score=44.97 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=119.0
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~ 636 (835)
.|..++....- .++. . ||.|+.|-......+..-......|..|+...+.. ++. . ||.|+.|-...... +-..
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 35555554332 2333 4 88888886543211111111233577777754432 333 4 89999997654322 1111
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FKSGATQMRFQPRLGRILAAAIENYISILDVETQV 713 (835)
Q Consensus 637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~---~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~ 713 (835)
..-...|..|+.-.. +.+ .-. ||.|+.|-....-.+.. ....+..++. ...+.++.. ||.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~--G~~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc--ccCEEEEEE-CCEEEEecCCCCC
Confidence 111346777776543 233 334 99999998765322111 1122333333 333444444 7888888665321
Q ss_pred EEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271 714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 793 (835)
Q Consensus 714 ~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw 793 (835)
.+..-......|..|+...+.. ++. .||.|+.|-.......- .-......|..++..... .++.. ++.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence 1100011134577776654433 344 79999999765432110 000112345566554433 33344 9999999
Q ss_pred EcCCCcEEEeccCCCCeeEEEEeCCC
Q 003271 794 NMTENKTLTLSAHDKLVSSLAASTVN 819 (835)
Q Consensus 794 Dl~~~~~~~l~~h~~~V~~la~spdg 819 (835)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7655433222 3357777665443
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.20 E-value=1.6 Score=45.60 Aligned_cols=215 Identities=11% Similarity=0.001 Sum_probs=111.5
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~ 677 (835)
..|..|+.... +.+.-. ||.|+.|-...... +.........|..|+.... +.++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776544 333335 89999997654322 1111112335777776533 33433 4 8999999876532211
Q ss_pred ---EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003271 678 ---VFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 754 (835)
Q Consensus 678 ---~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~ 754 (835)
.+...+..++.. ..+.++.. +|.|+.|-....-.+-.-......|..++......++ .. ||.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEecCCCCC
Confidence 112234444433 34555666 8999999765321110011123457777654433322 23 8999999765432
Q ss_pred CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271 755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 833 (835)
Q Consensus 755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I 833 (835)
... ........|..++.... +.++. .+|.|+.|-....-.+ .-......|..|+..... .++.. ||.|+.
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 111 00111245666665444 33333 6899999976543222 111122457777755433 33333 888888
Q ss_pred e
Q 003271 834 W 834 (835)
Q Consensus 834 W 834 (835)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 8
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=92.85 E-value=12 Score=39.99 Aligned_cols=262 Identities=7% Similarity=0.008 Sum_probs=136.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCC-------eEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEe---cCCCC-----
Q 003271 567 GKLLATGGHDKKAVLWCTESF-------TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD----- 630 (835)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~-------~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD---l~t~~----- 630 (835)
..++++.+.+|.|+--.+.+. +-+..+. ...+.+..+........|+.-+..|.++... +....
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 346778888888887654321 1111111 1234555555544555666667777666554 33221
Q ss_pred ceeEEe--ecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCe-------eeeEeec--CceEEEEecCCCEEEE
Q 003271 631 YSLRTF--TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGS-------CAGVFKS--GATQMRFQPRLGRILA 697 (835)
Q Consensus 631 ~~~~~~--~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~-------~~~~~~~--~i~~l~fsp~~~~ll~ 697 (835)
.++..+ ......|.++...++ .+.+++..+.+|.|+...+.... ....++. .+..+........++.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 111111 112345665544332 24577788999999998875422 1122222 2444445556678999
Q ss_pred EEcCCcEEEEECC--C---------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----cceEE-
Q 003271 698 AAIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIH- 760 (835)
Q Consensus 698 ~s~dg~I~IwDl~--t---------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~----~~~i~- 760 (835)
.+..|.+..+.+. . +.....+. ....|.++...+++.+|+..+ .|.++.-.+..-.. ..-+.
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 9999998888776 2 11112222 345677776666666777776 89988887653211 01122
Q ss_pred -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-------Eec--cCCCCeeEEEEeCC-CCEEEEEECCC
Q 003271 761 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK 829 (835)
Q Consensus 761 -~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------~l~--~h~~~V~~la~spd-g~~LaSgs~DG 829 (835)
.+......+..+....+...|+..+.+|.+..++...-... ... .....|.++...+. ...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 22222345666655555667888888888777776432211 111 22455666665543 34455555554
No 361
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.62 E-value=22 Score=38.68 Aligned_cols=163 Identities=10% Similarity=0.080 Sum_probs=95.9
Q ss_pred cEEEEECCCC--eeeeEeec---------CceEEEEe---cC----CCEEEEEEc-CCcEEEEECCCCeEEEEEcC----
Q 003271 664 EIRYWSINNG--SCAGVFKS---------GATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 720 (835)
Q Consensus 664 ~I~iwDl~s~--~~~~~~~~---------~i~~l~fs---p~----~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~---- 720 (835)
.|.+||+.+. +.++.+.- ....+++. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667888887 77766542 25667777 22 345555553 57899999998876654421
Q ss_pred C--------------CCCeEEEEEcCC----CCEEEEEeCCeEEEEEcC-----CCCCcceEEEeecCC--CceEEEEEe
Q 003271 721 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 775 (835)
Q Consensus 721 h--------------~~~I~sl~fspd----g~~LasgsDg~I~IwDl~-----t~~~~~~i~~l~~~~--~~V~sv~fs 775 (835)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-... ..-...++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 136788999998 788888772223444433 221112233332222 334456675
Q ss_pred -CCCCEEEEEEcCCeEEEEEcCC-C----cEE--EeccCCCCeeEEEEeCCCCEEEEEE
Q 003271 776 -PTFPSLLVIGCYETLELWNMTE-N----KTL--TLSAHDKLVSSLAASTVNGMVASAS 826 (835)
Q Consensus 776 -pdg~~L~sgs~dg~I~IwDl~~-~----~~~--~l~~h~~~V~~la~spdg~~LaSgs 826 (835)
.+|..+++--....|..|+..+ . ... .....-..+.++++..++.+.+.++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5665555555667999999876 1 112 2222233577888888887666654
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=89.81 E-value=25 Score=38.05 Aligned_cols=229 Identities=10% Similarity=0.079 Sum_probs=116.3
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEecCCCC--------c-e-eEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD--------Y-S-LRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--------~-~-~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i 667 (835)
.|..|+. ...+.+.-..||.|+.|-..... . . ...+.. ....+..++++.... ..+.-..||.|+.
T Consensus 54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~-h~~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK-HCLALSSEGEVYS 130 (389)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS-EEEEEETTSCEEE
T ss_pred ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC-eEEEEcCCCCEEE
Confidence 3445544 33456666789999999643211 0 0 111111 223344555554434 3445567999999
Q ss_pred EECCCCe-----------eeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCC----------e-EEEEEcC-CC
Q 003271 668 WSINNGS-----------CAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-HK 722 (835)
Q Consensus 668 wDl~s~~-----------~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~----------~-~i~~l~~-h~ 722 (835)
|-....- ....+. .....+.+.....+.++...+|.|+.|-.... . ....+.. ..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 9764311 011111 11233444555677788888999999965320 1 1111221 23
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCeEEEEEcCCCC------Ccc--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271 723 NQVHSVCWNTS-GEYLASVSDELVRVWSIGSGS------KGE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLEL 792 (835)
Q Consensus 723 ~~I~sl~fspd-g~~LasgsDg~I~IwDl~t~~------~~~--~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~I 792 (835)
..|..++.... ...++...|+.|+.|-..... ... ....+.. ....|..++.. ..+.++...+|.|+.
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~ 288 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYT 288 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEE
Confidence 45777766442 333444449999999754310 000 1111111 12245555553 335666688899999
Q ss_pred EEcCCC---------c---EEEeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 793 WNMTEN---------K---TLTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 793 wDl~~~---------~---~~~l~~h-~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
|-.... . +..+... ...|..|+.. ..+.+....||.|+.|
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 965321 1 1122211 2346566543 3345555788888887
No 363
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=89.42 E-value=24 Score=37.37 Aligned_cols=231 Identities=7% Similarity=0.035 Sum_probs=124.8
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCe----EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---CCC-----ce
Q 003271 565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-----YS 632 (835)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~----~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---t~~-----~~ 632 (835)
++..++++.+.+|.|+--.+.+.+ ....++.. +.+..+........|+..+..|.++-+... ... .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566788899999999877654221 11123333 345455444455677777788877666542 111 11
Q ss_pred eEE-e-ecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC--------eeeeEeec--CceEEEEecCCCEEEEE
Q 003271 633 LRT-F-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG--------SCAGVFKS--GATQMRFQPRLGRILAA 698 (835)
Q Consensus 633 ~~~-~-~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~--------~~~~~~~~--~i~~l~fsp~~~~ll~~ 698 (835)
+.. + ......|.++...++ ....++..+.+|.++...+... .....++. .+..+........++..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 101 1 112344655433332 1334667788999999887422 22222222 23334444456788899
Q ss_pred EcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCC---CC-cceEEE--
Q 003271 699 AIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSG---SK-GECIHE-- 761 (835)
Q Consensus 699 s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~---~~-~~~i~~-- 761 (835)
+.+|.+..|.... |.....+. ....|.++...+++. .|+..+ .|..+..++..- .. .+-+..
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 9999988887642 11222222 234566665444444 555555 888888877541 10 111222
Q ss_pred -eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 762 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 762 -l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
+......+..+....++..+++.+..|.+..+++..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 222333555444444455677888888776666644
No 364
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=89.13 E-value=29 Score=37.87 Aligned_cols=226 Identities=5% Similarity=-0.002 Sum_probs=117.8
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEecCCCC-----------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (835)
Q Consensus 599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-----------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i 667 (835)
.|..|+.. ..+.+.-..||.|+.|-..... ...-........|..|+... ...+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence 46666654 4466667789999999653211 00111111234566666543 23445567999999
Q ss_pred EEC--CC-Cee---------e-eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCC----------------------
Q 003271 668 WSI--NN-GSC---------A-GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ---------------------- 712 (835)
Q Consensus 668 wDl--~s-~~~---------~-~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~---------------------- 712 (835)
|-. .. +.+ . ..+......+.+.....+.++...+|.|+.|-....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~ 230 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDL 230 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccc
Confidence 986 32 211 0 011122233444445567778888999999953211
Q ss_pred -eEEEEEcCCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCCCC--------CcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271 713 -VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSLL 782 (835)
Q Consensus 713 -~~i~~l~~h~~~I~sl~fspdg~~Las-gsDg~I~IwDl~t~~--------~~~~i~~l~~~~~~V~sv~fspdg~~L~ 782 (835)
.+..........|..|+.... ..++. ..++.|+.|-..... ..............|..++. ...+.+
T Consensus 231 ~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~ 307 (423)
T 3mvd_K 231 LRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTV 307 (423)
T ss_dssp SSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEE
T ss_pred cCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEE
Confidence 111111122345666654432 22333 248888888754321 00111122222345655554 334567
Q ss_pred EEEcCCeEEEEEcCCC---------c----EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 783 VIGCYETLELWNMTEN---------K----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 783 sgs~dg~I~IwDl~~~---------~----~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
+...+|.|+.|-.... . +..+..-...|..|+... .+.+.-..||.|+.|
T Consensus 308 alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 308 ILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred EEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 7788899999965321 1 112222333677776653 334444688889888
No 365
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=88.69 E-value=47 Score=39.74 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=77.1
Q ss_pred CCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCC-CCEEEEEECCCe----E
Q 003271 555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 621 (835)
Q Consensus 555 ~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspd-g~~Latgs~Dg~----I 621 (835)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|++.|. ...++.+..+.. .
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999985 34566677677766654 334444444332 246999999984 344555443211 3
Q ss_pred EEEecCCCCceeEEeecC-------C--CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCc
Q 003271 622 RVWDTENPDYSLRTFTGH-------S--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGA 683 (835)
Q Consensus 622 ~IWDl~t~~~~~~~~~~h-------~--~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i 683 (835)
.||...++.......... . ..+..++++|.....++.+...+.|. .....++.-..+. ..+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455444433323222110 1 13567888886555665665344332 2222232211111 236
Q ss_pred eEEEEecCC-CEEEEEEcC
Q 003271 684 TQMRFQPRL-GRILAAAIE 701 (835)
Q Consensus 684 ~~l~fsp~~-~~ll~~s~d 701 (835)
..+.++|.. +.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 678888854 466676655
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=87.32 E-value=22 Score=42.12 Aligned_cols=220 Identities=10% Similarity=0.056 Sum_probs=110.9
Q ss_pred EEE-ECCCCCEEEEEEC-C----CeEEEEecCCCCceeEEee-cCCC------CeEEEEEcCCCCcEEEEEe--------
Q 003271 602 DVR-FSPSLSRLATSSA-D----RTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD-------- 660 (835)
Q Consensus 602 sv~-fspdg~~Latgs~-D----g~I~IWDl~t~~~~~~~~~-~h~~------~V~sl~fsp~g~~ll~sgs-------- 660 (835)
.+. ++|++++++.+-. . ..|+++|+.+++..-..+. ..+. ....++|..+ +.++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence 344 8889887766422 2 3799999998764221222 0000 1134477633 44554421
Q ss_pred --CCCcEEEEECCCCe--eeeEeecC----ceEEEEecCCCE----EEE-EEcC---CcEEEEECCC--CeEEEEEcCCC
Q 003271 661 --NNSEIRYWSINNGS--CAGVFKSG----ATQMRFQPRLGR----ILA-AAIE---NYISILDVET--QVCRLKLQGHK 722 (835)
Q Consensus 661 --~Dg~I~iwDl~s~~--~~~~~~~~----i~~l~fsp~~~~----ll~-~s~d---g~I~IwDl~t--~~~i~~l~~h~ 722 (835)
....|+.|.+-+.. -...+... ......+.++++ +++ .+.+ ..+++.|... ++.+ .+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence 12468888886542 22233322 223344556552 333 3322 4567777653 3322 222122
Q ss_pred CCeEEEEEcCCCCEEEEE-----------eCCeEEEEEcCCCCCc----ceEEE-e-ecCCCceEEEEEeCCCCEEEEEE
Q 003271 723 NQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasg-----------sDg~I~IwDl~t~~~~----~~i~~-l-~~~~~~V~sv~fspdg~~L~sgs 785 (835)
. . .+..+.++.+++.. ..+.|.++|+.+.... ..... + ......+..+.|..+ ..+++..
T Consensus 291 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 D-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp T-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred c-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 1 1 12334455555532 1567999998764210 11222 2 223445677888766 4556666
Q ss_pred cCC--eEEEEEcCCCc--EEE-ec-cCCCCeeEEEEeCCCC-EEEEEE
Q 003271 786 CYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 826 (835)
Q Consensus 786 ~dg--~I~IwDl~~~~--~~~-l~-~h~~~V~~la~spdg~-~LaSgs 826 (835)
.++ .|+++|+.++. ... +. ...+.|..+.+++++. ++++.+
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 666 67888877664 212 21 1134566666666665 444444
No 367
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=87.16 E-value=0.64 Score=39.35 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003271 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (835)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~ 41 (835)
+-||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 35899999999999999999999999988754
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=86.00 E-value=37 Score=35.61 Aligned_cols=222 Identities=10% Similarity=0.033 Sum_probs=114.2
Q ss_pred CCCCEEEEEECCCeEEEEecCCCCcee--------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC---
Q 003271 607 PSLSRLATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN--- 672 (835)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~t~~~~~--------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl---~s--- 672 (835)
|+..++++.+.+|.|+--.+.+-.... ..+. ..+.+..+........++ ..+..|.++.+.. ..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence 345678888999999887765422100 1122 223444443333334444 4455777665544 22
Q ss_pred ---Ceeee---EeecC--ceEEEEe---cCCCEEEEEEcCCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCC-
Q 003271 673 ---GSCAG---VFKSG--ATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS- 733 (835)
Q Consensus 673 ---~~~~~---~~~~~--i~~l~fs---p~~~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~fspd- 733 (835)
|..+. .+..+ +..+... .++.+++.++..|.++...+.. +.....+..+ ..+..+....+
T Consensus 79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence 22111 12222 3333221 3456799999999999887642 2222233334 45555444444
Q ss_pred CCEEEEEeCCeEEEEEcCCCCC------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--------
Q 003271 734 GEYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------- 799 (835)
Q Consensus 734 g~~LasgsDg~I~IwDl~t~~~------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~-------- 799 (835)
..+++..++|.+..++...-.. +.....+. ....|.++....++..|++.+..|.++-.++....
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 4445555589888887643210 11111232 34566666655566779999999988888773321
Q ss_pred EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 800 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 800 ~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
.. .+..-.+.+..+....+...|+..+.+|.+.
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 11 2222335555554444445555566666543
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=85.87 E-value=37 Score=35.62 Aligned_cols=229 Identities=9% Similarity=0.029 Sum_probs=123.9
Q ss_pred eCCCCEEEEEeCCCeEEEEEcCCCeE-------E--EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc---
Q 003271 564 SPDGKLLATGGHDKKAVLWCTESFTV-------K--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--- 631 (835)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~-------i--~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--- 631 (835)
-++..++++.+.+|.|+--.+...+. + ..++.. +.+..+........++..+..|.++-+....-..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 34667889999999999887654321 1 122322 3455555555556788888899877776542110
Q ss_pred -----e---eEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-------eeeeEee--cCceEEEEecCC
Q 003271 632 -----S---LRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFK--SGATQMRFQPRL 692 (835)
Q Consensus 632 -----~---~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~-------~~~~~~~--~~i~~l~fsp~~ 692 (835)
. ...+. ....|.++...++ ....++..+..|.++...+... .....+. ..+..+.....+
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 0 00112 2344555543321 2234556788999998887432 2222222 224444444456
Q ss_pred CEEEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC----Ccce
Q 003271 693 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS----KGEC 758 (835)
Q Consensus 693 ~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~----~~~~ 758 (835)
..++..+.+|.+..+.+.. |.....+. ....|.++....++..|++.+ .|.++.+++..-. ...-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 7899999999998887753 22222333 245566665555556566666 8899988875321 0111
Q ss_pred EEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 759 IHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 759 i~~l~---~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
+..+. .....+..+........++..+..|.+.-...
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 22222 22344444433344556677777775444444
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=84.18 E-value=50 Score=35.65 Aligned_cols=232 Identities=10% Similarity=0.042 Sum_probs=128.6
Q ss_pred EeCCCCEEEEEeCCCeEEEEEcCC---------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---CCC
Q 003271 563 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD 630 (835)
Q Consensus 563 fSpdg~~Lasgs~Dg~I~VWd~~t---------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---t~~ 630 (835)
+-++..++++.+.+|.|+--.+.+ +.....++. .+.+..+........|+..+..|.++-+... ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 456788999999999999865432 223344443 4566666666666777777888877666542 111
Q ss_pred -----ceeEEe--ecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCe-------eeeEee--cCceEEEEecCC
Q 003271 631 -----YSLRTF--TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGS-------CAGVFK--SGATQMRFQPRL 692 (835)
Q Consensus 631 -----~~~~~~--~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~-------~~~~~~--~~i~~l~fsp~~ 692 (835)
..+..+ ......|.++.... +....++.++..|.++...+.... ....++ ..+..+......
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 011110 12335566554432 123366688889999998864322 122222 223334444555
Q ss_pred CEEEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcC-------------------------------
Q 003271 693 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------- 732 (835)
Q Consensus 693 ~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fsp------------------------------- 732 (835)
..++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6788888889888886542 11111222 234455554433
Q ss_pred ----CCCEEEEEe-CCeEEEEEcCCCC----CcceEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 733 ----SGEYLASVS-DELVRVWSIGSGS----KGECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 733 ----dg~~Lasgs-Dg~I~IwDl~t~~----~~~~i~--~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
++.+|++.+ .|..+...+..-. ...-+. .+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 345677777 8888888775321 111122 222333456555555555667777877766655553
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.01 E-value=50 Score=35.54 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=119.7
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCC-----------CeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWD 625 (835)
|..++.. ....+.-..||.|+.|-... ......+.. ....+..++++....+.+.-..||.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4444443 33555556788888885321 111222222 223455677776667777778999999996
Q ss_pred cCCCC---------c-eeEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---------e--eeEee---
Q 003271 626 TENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------C--AGVFK--- 680 (835)
Q Consensus 626 l~t~~---------~-~~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~---------~--~~~~~--- 680 (835)
..... . ....+.. ....|..|+.-. ...+.-..+|.|+.|-....- . ...+.
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 43211 0 0111111 123566666543 234455679999999764310 0 01111
Q ss_pred -cCceEEEEecCCCEEEEEEcCCcEEEEECCC----------C-eEEEEEcC-CCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 003271 681 -SGATQMRFQPRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV 747 (835)
Q Consensus 681 -~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t----------~-~~i~~l~~-h~~~I~sl~fspdg~~LasgsDg~I~I 747 (835)
..+..++......+.++...+|.|+.|-... . .....+.. ....|..|+.... ..++...||.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEE
Confidence 1233444333336777788899999996432 0 11122221 2224666654322 2334444889999
Q ss_pred EEcCCC------CCcc--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 748 WSIGSG------SKGE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 748 wDl~t~------~~~~--~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
|-.... .... ....+.. ....|..++. ...+.++...+|.|+.|-...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 975431 0001 1111111 2234555554 334567778899999997653
No 372
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=83.05 E-value=0.82 Score=38.94 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 003271 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (835)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~ 42 (835)
.-+|-.||-||..+|+..+|-+|-+|.++...+
T Consensus 6 devN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 6 DEVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 357999999999999999999999999887543
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=82.97 E-value=49 Score=34.62 Aligned_cols=231 Identities=9% Similarity=0.066 Sum_probs=124.1
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEE---------EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---CCC--
Q 003271 565 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-- 630 (835)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~---------~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---t~~-- 630 (835)
|+..++++.+.+|.|+--.+.+.+... .++.+ +.+..+........|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 355678889999999887776543221 12222 344444444455677777788876666542 211
Q ss_pred ---ceeE-Ee-ecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCC-------CeeeeEee--cCceEEEEecCCCE
Q 003271 631 ---YSLR-TF-TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK--SGATQMRFQPRLGR 694 (835)
Q Consensus 631 ---~~~~-~~-~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s-------~~~~~~~~--~~i~~l~fsp~~~~ 694 (835)
..+. .+ ......|.++...+ +....++..+.+|.++...+.. +.....+. ..+..+........
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE 159 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence 1110 01 12334566654422 2233566788899999987642 21111222 22334444445678
Q ss_pred EEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---C---cce
Q 003271 695 ILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---K---GEC 758 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~---~---~~~ 758 (835)
++..+.+|.+..++... +.....+. ....|.++....++..|+..+ .|.++..++..-. . ...
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 88899999988887642 12222232 345666665555556666666 8888888774321 1 111
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
...+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus 239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 222333335555555544556677888888776666654
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.24 E-value=53 Score=33.81 Aligned_cols=195 Identities=10% Similarity=-0.010 Sum_probs=108.9
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEE---ecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG 673 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IW---Dl~t~~~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwDl~s~ 673 (835)
+.+..+.......+|+.-+.+|.++-- ++...... . +......|..+.. .+ .+..++..+.+|.|+...+...
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~-~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKV-S-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEEC-C-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccc-c-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345444444444456666677766543 33322110 0 1223456666644 32 3446778889999999887543
Q ss_pred e------eeeEeec--CceEEEEecCCCEEEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271 674 S------CAGVFKS--GATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY 736 (835)
Q Consensus 674 ~------~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~~ 736 (835)
. ....++. .+..+........++..+..|.++.+.... |.....+. ....|.++...+++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 2 2222322 244444455567899999999988887532 22222233 2355666655555556
Q ss_pred EEEEe-CCeEEEEEcCCCC----CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EEcCC
Q 003271 737 LASVS-DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 797 (835)
Q Consensus 737 Lasgs-Dg~I~IwDl~t~~----~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I--wDl~~ 797 (835)
++..+ .|.++...+..-. ..+-+..+ ...+.+..+........++..+.+|.+.. ++..+
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66666 8888888874321 11222223 23455655554445556888888887777 77643
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.08 E-value=1.1e+02 Score=36.60 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=71.5
Q ss_pred CCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecC-------CCCeEEEEEcCCCCcEEEEEeCCCc----
Q 003271 597 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 664 (835)
Q Consensus 597 ~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~sgs~Dg~---- 664 (835)
...|.+|+++|. ...++++...+.|...+ .+......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 45667777777655443 222223333322 2469999999864444444432211
Q ss_pred EEEE-ECCCCeeeeEeec------------CceEEEEecCC-CEEEEEEcCCcEEEEECC---CCeEEEEEc---CCCCC
Q 003271 665 IRYW-SINNGSCAGVFKS------------GATQMRFQPRL-GRILAAAIENYISILDVE---TQVCRLKLQ---GHKNQ 724 (835)
Q Consensus 665 I~iw-Dl~s~~~~~~~~~------------~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~---t~~~i~~l~---~h~~~ 724 (835)
-.|| ....++.-..... .+..++++|.. +.++++...+.|.. ... +.+.+.... .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2233 3333433222211 13468888764 44555543444332 222 223222111 11245
Q ss_pred eEEEEEcCC-CCEEEEEe
Q 003271 725 VHSVCWNTS-GEYLASVS 741 (835)
Q Consensus 725 I~sl~fspd-g~~Lasgs 741 (835)
+..|.++|. +..|+++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 788998874 34455444
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=79.80 E-value=1e+02 Score=36.31 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=57.2
Q ss_pred CEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECC-CCCEEEEEECC-------Ce
Q 003271 557 KVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------RT 620 (835)
Q Consensus 557 ~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fsp-dg~~Latgs~D-------g~ 620 (835)
.|.+|+++|.. ..|+++...+.|..++- .++.-..+..+ ...|.+|+++| +...|+++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999863 45556665666666653 33333333322 24599999998 33444444321 12
Q ss_pred EEEEecCCCCceeEEee-cCC--------CCeEEEEEcCCCCcEEEEEe
Q 003271 621 VRVWDTENPDYSLRTFT-GHS--------TTVMSLDFHPSKEDLLCSCD 660 (835)
Q Consensus 621 I~IWDl~t~~~~~~~~~-~h~--------~~V~sl~fsp~g~~ll~sgs 660 (835)
..||...++........ ... ..+.+|+++|....+++.+.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 55666554433222221 110 12467999987655565665
No 377
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.66 E-value=66 Score=33.99 Aligned_cols=193 Identities=11% Similarity=0.023 Sum_probs=103.1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEE---cCC------CeEEEE---eccCCCCeEEE-EECC--CCCEEEEEECCCeE
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTV 621 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd---~~t------~~~i~~---l~~h~~~V~sv-~fsp--dg~~Latgs~Dg~I 621 (835)
.+..+........|+.-+..|.++... +.. |..+.. +. ....|.++ .+.. +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444445566666677766554 322 233211 22 23445554 4432 57799999999999
Q ss_pred EEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC--CCee-------e--eEee--cC
Q 003271 622 RVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--NGSC-------A--GVFK--SG 682 (835)
Q Consensus 622 ~IWDl~t~~~------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~--s~~~-------~--~~~~--~~ 682 (835)
+...+..-.. ....+.. .+.+..+........++ ..+..|.+..+... .-.. + -.+. ..
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 9988764221 1112333 34555555544444444 56668888888776 3211 1 1122 22
Q ss_pred ceEEEEecCCCEEEEEEcCCcEEEEECCCC-------eEEE--EEcCCCCCeEEEEEc-CCCCEEEEEeCCeEEEEEcCC
Q 003271 683 ATQMRFQPRLGRILAAAIENYISILDVETQ-------VCRL--KLQGHKNQVHSVCWN-TSGEYLASVSDELVRVWSIGS 752 (835)
Q Consensus 683 i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-------~~i~--~l~~h~~~I~sl~fs-pdg~~LasgsDg~I~IwDl~t 752 (835)
+..+.....+..++.++..|.++...+..- .-+. .+......+..+... .+..+++...+|.+..++...
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 444555555678999999999888876421 1122 222213345444433 333444444488777777643
No 378
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=79.50 E-value=65 Score=33.76 Aligned_cols=187 Identities=12% Similarity=0.086 Sum_probs=104.6
Q ss_pred CCCCEEEEEECCCeEEEEecCCCCce------e--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---C--
Q 003271 607 PSLSRLATSSADRTVRVWDTENPDYS------L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G-- 673 (835)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~t~~~~------~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s---~-- 673 (835)
++..++++.+.+|.|+-..+..-... + ..+. ..+.+..+........ ++..+..|.++.+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~-ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDY-LFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCE-EEEEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCE-EEEEECCCeEEEEEHHHCCCCCc
Confidence 45678889999999998876543210 1 1122 2344444444444343 44556688877766532 1
Q ss_pred ----ee---eeEeec--CceEEEEec---CCCEEEEEEcCCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCCC
Q 003271 674 ----SC---AGVFKS--GATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 734 (835)
Q Consensus 674 ----~~---~~~~~~--~i~~l~fsp---~~~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~fspdg 734 (835)
.. ...+.. .+..+.... ...+++.++..|.++...+.. +.....+.. ...+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 001111 133332222 457889999999999887743 222223333 4556555554444
Q ss_pred CEEEEEe-CCeEEEEEcCCC----CC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 735 EYLASVS-DELVRVWSIGSG----SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 735 ~~Lasgs-Dg~I~IwDl~t~----~~--~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
..|+..+ +|.+..+....- .. +.....+. ....|..+....++..|++.+..|.++.+++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4444444 999988887541 11 11222233 245666766666667799999999999888754
No 379
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=77.75 E-value=81 Score=33.96 Aligned_cols=224 Identities=8% Similarity=0.014 Sum_probs=117.6
Q ss_pred ECCCCCEEEEEECCCeEEEEecCC-------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC--
Q 003271 605 FSPSLSRLATSSADRTVRVWDTEN-------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN-- 672 (835)
Q Consensus 605 fspdg~~Latgs~Dg~I~IWDl~t-------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl---~s-- 672 (835)
+-++..++++.+.+|.|+--.+.+ ++.....-....+.+..+........++ ..+..|.++.+.. ..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll-~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLL-TFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEE-EEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEE-EEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999999876532 1111112222345666665555544454 4455777666553 22
Q ss_pred ----Ceeee---Eeec--CceEEE-Ee--cCCCEEEEEEcCCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCC
Q 003271 673 ----GSCAG---VFKS--GATQMR-FQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS 733 (835)
Q Consensus 673 ----~~~~~---~~~~--~i~~l~-fs--p~~~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~fspd 733 (835)
|..+. .+.. .+..+. +. ..+.+++.++..|.++...+.. +.....+.. ...+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 22211 1221 233333 22 2356899999999999887642 222223333 344544444444
Q ss_pred CCEEEEEe-CCeEEEEEcCCCC------CcceEEEeecCCCceEEEEEeC------------------------------
Q 003271 734 GEYLASVS-DELVRVWSIGSGS------KGECIHELSCTGNKFHSCVFHP------------------------------ 776 (835)
Q Consensus 734 g~~Lasgs-Dg~I~IwDl~t~~------~~~~i~~l~~~~~~V~sv~fsp------------------------------ 776 (835)
...|+..+ +|.+..|+...-. .+.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 44444444 8888888764321 111111222 234455554443
Q ss_pred -----CCCEEEEEEcCCeEEEEEcCCCcE--------E--EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271 777 -----TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 831 (835)
Q Consensus 777 -----dg~~L~sgs~dg~I~IwDl~~~~~--------~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V 831 (835)
.+..|++.+..|..+...+..-.. . .+....+.+..+.+..+...|+..+..|.+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456899999999888887753221 1 222333455555444444455555666654
No 380
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.97 E-value=79 Score=32.44 Aligned_cols=192 Identities=10% Similarity=-0.005 Sum_probs=103.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEE---EcCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCC-
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 630 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VW---d~~t~~~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~- 630 (835)
+.|.++.......+|+.-+.+|.++-- ++........+. ....|..+.... +..+++.++.+|.|+...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 445555544445556666677776643 333222111133 345566664421 46789999999999999876531
Q ss_pred ----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---------eeeEee--cCceEEEEecCCCEE
Q 003271 631 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CAGVFK--SGATQMRFQPRLGRI 695 (835)
Q Consensus 631 ----~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~---------~~~~~~--~~i~~l~fsp~~~~l 695 (835)
.....+. ..+.+..+....... .++..+..|.++.++...-. ....+. ..+..+....++..+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~-~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDET-HILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSC-EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCC-EEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 1111222 234566665554444 44456678888888753311 111122 124444444556789
Q ss_pred EEEEcCCcEEEEECCC-------CeEEEEEcCCCCCeEEEEE-cCCCCEEEEEeCCeEEE--EEcC
Q 003271 696 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NTSGEYLASVSDELVRV--WSIG 751 (835)
Q Consensus 696 l~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~f-spdg~~LasgsDg~I~I--wDl~ 751 (835)
+..+..|.++...+.. ++-+..+ ...+.+..+.. ..+..+++...+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999988887642 1222223 23344444433 33334444444777766 7654
No 381
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=73.38 E-value=1.1e+02 Score=33.20 Aligned_cols=162 Identities=7% Similarity=0.067 Sum_probs=89.5
Q ss_pred eEEEEEcCCC--eEEEEecc------CCCCeEEEEEC---CC----CCEEEEEE-CCCeEEEEecCCCCceeEEee----
Q 003271 578 KAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT---- 637 (835)
Q Consensus 578 ~I~VWd~~t~--~~i~~l~~------h~~~V~sv~fs---pd----g~~Latgs-~Dg~I~IWDl~t~~~~~~~~~---- 637 (835)
+|.+||+.+. +.++++.- ....+.++++. ++ +.+++.+. ..+-|.|+|+.+++. .+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 6889999998 88877643 23457888887 22 34444444 467899999987653 22221
Q ss_pred ----------cC----CCCeEEEEEcCC----CCcEEEEEeCCCcEEEEEC---CCC---eeeeEee--c---CceEEEE
Q 003271 638 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWSI---NNG---SCAGVFK--S---GATQMRF 688 (835)
Q Consensus 638 ----------~h----~~~V~sl~fsp~----g~~ll~sgs~Dg~I~iwDl---~s~---~~~~~~~--~---~i~~l~f 688 (835)
+. ...|..|+++|+ ++.+++..-....++-... +.. ..+..+. + ....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 00 136788888887 5555555544334443331 111 1122221 1 1223556
Q ss_pred ecCCCEEEEEE-cCCcEEEEECCC-C----eEEEEEc-CCCCCeEEEEEcCCCCEEEEE
Q 003271 689 QPRLGRILAAA-IENYISILDVET-Q----VCRLKLQ-GHKNQVHSVCWNTSGEYLASV 740 (835)
Q Consensus 689 sp~~~~ll~~s-~dg~I~IwDl~t-~----~~i~~l~-~h~~~I~sl~fspdg~~Lasg 740 (835)
++..+.++.+. ..+.|..|+..+ . ....... ..-..+..+.+..+|.+.+..
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 54445555554 558899999876 1 1111111 122356677776666654444
No 382
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=72.94 E-value=1.5e+02 Score=34.81 Aligned_cols=99 Identities=10% Similarity=0.095 Sum_probs=52.3
Q ss_pred CeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecC-------CCCeEEEEEcCCC-CcEEEEEeC-C-----C
Q 003271 599 WITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSK-EDLLCSCDN-N-----S 663 (835)
Q Consensus 599 ~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-------~~~V~sl~fsp~g-~~ll~sgs~-D-----g 663 (835)
.|..|+++|. ...|+++...+.|..++- .......+..+ ...|.+|+++|.. +.++++.+. . +
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D--~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~ 101 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP--STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPN 101 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET--TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC--CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccC
Confidence 7999999986 345666665665555542 22223333222 2458999999854 344444331 0 1
Q ss_pred cEEEEEC-CCCeeeeEeec------------CceEEEEecCC-CEEEEEE
Q 003271 664 EIRYWSI-NNGSCAGVFKS------------GATQMRFQPRL-GRILAAA 699 (835)
Q Consensus 664 ~I~iwDl-~s~~~~~~~~~------------~i~~l~fsp~~-~~ll~~s 699 (835)
...||.. ..++.-..... .+..++++|.. +.++++.
T Consensus 102 ~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 102 MGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 2344443 33332222111 13578888865 5566655
No 383
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=67.00 E-value=1.8e+02 Score=33.19 Aligned_cols=228 Identities=10% Similarity=0.060 Sum_probs=117.6
Q ss_pred CCCCEEEEEEeCCCCE-EEEEeCCCe----------------------------EEEEEcCCCeEEEEeccC--CCC---
Q 003271 554 STSKVESCHFSPDGKL-LATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQW--- 599 (835)
Q Consensus 554 H~~~V~sl~fSpdg~~-Lasgs~Dg~----------------------------I~VWd~~t~~~i~~l~~h--~~~--- 599 (835)
|...+....|.-||+. |++.+.+|+ |.|+|-.+++.+.++.-. .+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 5667888888888863 677766665 788888888888765321 111
Q ss_pred ------------eEEEEECC-CCCEEEEEE---CCCeEEEEecCCCCcee-EEeecC-----------CCCeEEEEEcCC
Q 003271 600 ------------ITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYSL-RTFTGH-----------STTVMSLDFHPS 651 (835)
Q Consensus 600 ------------V~sv~fsp-dg~~Latgs---~Dg~I~IWDl~t~~~~~-~~~~~h-----------~~~V~sl~fsp~ 651 (835)
..++++.. +...++.+- ....|..||...++... ..+... ...+...++.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 22344321 122333332 12357888887664321 111111 023444556666
Q ss_pred CCcEEEEEe----CCCcEEEEECCCCeeeeEeecCceEEEEecCC--CEEEEEEcC----CcEEEEECCCCeEEEEEcCC
Q 003271 652 KEDLLCSCD----NNSEIRYWSINNGSCAGVFKSGATQMRFQPRL--GRILAAAIE----NYISILDVETQVCRLKLQGH 721 (835)
Q Consensus 652 g~~ll~sgs----~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~--~~ll~~s~d----g~I~IwDl~t~~~i~~l~~h 721 (835)
|+.-|+.|+ .||++ +|...-+. ........|.|+. -.++.+..+ ....+.|..+++.+......
T Consensus 337 G~dEIv~Gs~~iD~dG~~-L~st~~gH-----GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGKG-MYSTGLGH-----GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp SSCEEEETTEEECTTSCE-EEECSCCC-----CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCceEEEeeeEECCCCCE-eeeCCCCC-----CCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 666555543 34443 45443211 1113334467763 355555554 14667899999999887642
Q ss_pred --CCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEcC
Q 003271 722 --KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMT 796 (835)
Q Consensus 722 --~~~I~sl~fspdg--~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~ 796 (835)
.+......|.|+. --+.+ +. .+|+.... .+... .....-..+-|.-+. +.|+- .+.|.-|+..
T Consensus 411 ~d~Gr~~~~Didp~~pG~E~w~--~~--~l~~~~G~----~i~~~-~p~~~N~~i~WdGDl~relld---~~~i~k~~~~ 478 (591)
T 2zux_A 411 KDVGRGMAADIDPRYPGQEVWA--NG--SLYSAKGV----KIGSG-VPSSTNFGIWWDGDLLREQLD---SNRIDKWDYQ 478 (591)
T ss_dssp SCCCCEEEECCCTTSSSCEEEE--TT--EEECTTSC----BCSSC-CCSCCSEEECCSSSSSCEEEE---TTEEEEEETT
T ss_pred CCCCceeEEecCCCCCceEEEe--cC--ceECCCCC----EecCC-CCCCcceeEEECCCCcHhhhC---CceEEecccC
Confidence 3444444555542 22222 22 35554332 11111 011122346666665 33333 2378889987
Q ss_pred CCc
Q 003271 797 ENK 799 (835)
Q Consensus 797 ~~~ 799 (835)
.+.
T Consensus 479 ~~~ 481 (591)
T 2zux_A 479 NGV 481 (591)
T ss_dssp TTE
T ss_pred CCc
Confidence 775
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=61.10 E-value=2.5e+02 Score=32.96 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271 724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 764 (835)
Q Consensus 724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~ 764 (835)
.|.++.+ +..++++-+ |.++|+|++.++ .++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~---~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSF---TLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTT---EEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCC---ceEEeecc
Confidence 3555554 467888888 999999999998 66655443
No 385
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.82 E-value=69 Score=39.20 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=34.3
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l 593 (835)
..|.+++..++..+|++-+.|++++||++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 46788889999999999999999999999999998765
No 386
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=57.47 E-value=1.9e+02 Score=30.32 Aligned_cols=222 Identities=12% Similarity=0.129 Sum_probs=115.2
Q ss_pred CCCCEEEEEECCCeEEEEecCCC---CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---C------Ce
Q 003271 607 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N------GS 674 (835)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~t~---~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---s------~~ 674 (835)
|+..++++.+.+|.|+--.+..- ......+.. .+.+..+........++ ..+..|.++.+... . |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 55678889999999988765421 110112222 33444444444434444 45557776665542 1 22
Q ss_pred eee---Eeec--CceEEE-Eec--CCCEEEEEEcCCcEEEEECCC--------CeEEEEEcCCCCCeEEEEEcCCCC-EE
Q 003271 675 CAG---VFKS--GATQMR-FQP--RLGRILAAAIENYISILDVET--------QVCRLKLQGHKNQVHSVCWNTSGE-YL 737 (835)
Q Consensus 675 ~~~---~~~~--~i~~l~-fsp--~~~~ll~~s~dg~I~IwDl~t--------~~~i~~l~~h~~~I~sl~fspdg~-~L 737 (835)
.+. .+.. .+..+. +.. ++.+++.++..|.++...+.. +.....+... ..+..+....... ++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 1111 133332 322 256799999999999987742 2222233322 4555554444444 44
Q ss_pred EEEeCCeEEEEEcCCC----CCcceEE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCC-------c-EEE
Q 003271 738 ASVSDELVRVWSIGSG----SKGECIH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN-------K-TLT 802 (835)
Q Consensus 738 asgsDg~I~IwDl~t~----~~~~~i~--~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~-------~-~~~ 802 (835)
+...+|.+..|....- ....-+. .+. ....|.++...+++. .|++.+..|..+..++..- + ...
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 4444998888876432 1111122 222 245566665544455 7999999998888777542 1 111
Q ss_pred e---ccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271 803 L---SAHDKLVSSLAASTVNGMVASASHDKCVK 832 (835)
Q Consensus 803 l---~~h~~~V~~la~spdg~~LaSgs~DG~V~ 832 (835)
+ ......+..+....++..|+..+..|.+.
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEE
Confidence 1 12222455443333344555666666643
No 387
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.13 E-value=77 Score=38.76 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=31.3
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 767 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
..+.+++..++..++++.+.|++++||++.++.++
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 45677888889999999999999999999999887
No 388
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=56.91 E-value=2.1e+02 Score=30.70 Aligned_cols=227 Identities=10% Similarity=0.081 Sum_probs=115.7
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-----------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-----------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~ 666 (835)
..|..|+... .+.+.-..||.|+.|-..... ...-........|..|+.-. ...+.-..||.|+
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~---~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD---SHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECS---SEEEEEETTSCEE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCC---CeEEEEcCCCcEE
Confidence 5677776643 355556689999999654211 00001111234666666543 2444556799999
Q ss_pred EEEC--CCCee------------eeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCC--------------------
Q 003271 667 YWSI--NNGSC------------AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ-------------------- 712 (835)
Q Consensus 667 iwDl--~s~~~------------~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-------------------- 712 (835)
.|-. ...-. ...+......+.+.....+.++.+.+|.|+.|-....
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred EeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 9975 22111 1111112223334444567777788899999965421
Q ss_pred ---eEE-EEEcC----CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC------cce--EEEeecCC---CceEEEE
Q 003271 713 ---VCR-LKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------GEC--IHELSCTG---NKFHSCV 773 (835)
Q Consensus 713 ---~~i-~~l~~----h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~------~~~--i~~l~~~~---~~V~sv~ 773 (835)
.+. ..+.. ....|..|+.... ..++...+|.|+.|-...... ... ...+.... ..|..++
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia 292 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFS 292 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEe
Confidence 010 01100 1245666655432 234444588999997653210 011 11111111 2355555
Q ss_pred EeCCCCEEEEEEcCCeEEEEEcCC----------CcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 774 FHPTFPSLLVIGCYETLELWNMTE----------NKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 774 fspdg~~L~sgs~dg~I~IwDl~~----------~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
. ...+.++...+|.|+.|-... .... ........|..|+.. ..+.+.-..||.|+.|
T Consensus 293 ~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G--~~hs~alt~~G~v~~w 361 (413)
T 1a12_A 293 G--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACG--ASVGYAVTKDGRVFAW 361 (413)
T ss_dssp E--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred c--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEEC--cceEEEEeCCCCEEEe
Confidence 4 334566777889999996532 1111 222222356666653 3344555678888888
No 389
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=54.73 E-value=2.3e+02 Score=30.43 Aligned_cols=267 Identities=9% Similarity=0.056 Sum_probs=132.4
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-----------CeEEEEecc-CCCCeEEEEECCCCCEEEEEECC-CeEE
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 622 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~D-g~I~ 622 (835)
..|..|+.-. ...+.-..||.|+.|-... ......+.. ....|..|+...+ +.+.-..| +.|+
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 3466665543 3445556688888885322 111122222 2235777776533 44434455 4899
Q ss_pred EEecCCCC--------cee--EEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----------e-eEee
Q 003271 623 VWDTENPD--------YSL--RTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----------A-GVFK 680 (835)
Q Consensus 623 IWDl~t~~--------~~~--~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----------~-~~~~ 680 (835)
.|-..... ... ..+. .....|..|+.-. ...+.-..||.|+.|-....-. . ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99543210 001 1111 1223577776542 2344556799999998653211 0 1111
Q ss_pred --cCceEEEEecCCCEEEEEEcCCcEEEEECCCC----------eE-EEEEcC-CCCCeEEEEEcCCCCEEEEEeCCeEE
Q 003271 681 --SGATQMRFQPRLGRILAAAIENYISILDVETQ----------VC-RLKLQG-HKNQVHSVCWNTSGEYLASVSDELVR 746 (835)
Q Consensus 681 --~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~----------~~-i~~l~~-h~~~I~sl~fspdg~~LasgsDg~I~ 746 (835)
.......+.....+.++...+|.|+.|-.... .. ...+.. ....|..|+... ...++...+|.|+
T Consensus 169 ~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~-~ht~~l~~~G~v~ 247 (406)
T 4d9s_A 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW-RHTISVSYSGALY 247 (406)
T ss_dssp GGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS-SEEEEEETTCCEE
T ss_pred ccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC-CcEEEEcCCCCEE
Confidence 11233344455567778888999999964321 11 111211 224566665432 2233344488999
Q ss_pred EEEcCCCCC------cc--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc------------EEEec-
Q 003271 747 VWSIGSGSK------GE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK------------TLTLS- 804 (835)
Q Consensus 747 IwDl~t~~~------~~--~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~------------~~~l~- 804 (835)
.|-...... .. ....+.. ....|..++. ...+.++...+|.|+.|-....- ...+.
T Consensus 248 ~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 325 (406)
T 4d9s_A 248 TYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRF 325 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECC
T ss_pred EeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEec
Confidence 997543210 01 1111111 1233555544 34456677788999999654310 11111
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271 805 AHDKLVSSLAASTVNGMVASASHDKCVKIW 834 (835)
Q Consensus 805 ~h~~~V~~la~spdg~~LaSgs~DG~V~IW 834 (835)
.....|..|+.. ..+.+.-..||.|+.|
T Consensus 326 ~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 326 PDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp GGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred cCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 122346666543 3344555678888887
No 390
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=51.74 E-value=97 Score=26.98 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=16.6
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003271 726 HSVCWNTSGEYLASVSDELVRVWSIGS 752 (835)
Q Consensus 726 ~sl~fspdg~~LasgsDg~I~IwDl~t 752 (835)
..+.+..+|.+++...++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 35677778887776555544 677554
No 391
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.47 E-value=1.1e+02 Score=35.13 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=41.3
Q ss_pred eEEEEecCCCEEEEEEcC------------CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe
Q 003271 684 TQMRFQPRLGRILAAAIE------------NYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS 741 (835)
Q Consensus 684 ~~l~fsp~~~~ll~~s~d------------g~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs 741 (835)
-.|+|++.|+.+++-..+ +.+.+++..+++....+.+ ....++.++|+||++.|++.-
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 458899998855554322 2466777777877666655 456899999999998887653
No 392
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=47.28 E-value=1.1e+02 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=15.6
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003271 727 SVCWNTSGEYLASVSDELVRVWSIGS 752 (835)
Q Consensus 727 sl~fspdg~~LasgsDg~I~IwDl~t 752 (835)
.+.+..||.+++...++. .||...+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEeCCccEEEECCCcE-EEEEecC
Confidence 467778888776554544 3676544
No 393
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=46.35 E-value=3e+02 Score=29.44 Aligned_cols=228 Identities=7% Similarity=-0.065 Sum_probs=112.8
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-------------eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (835)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-------------~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I 623 (835)
.|..|+.. +...+.-..||.|+.|-.... .....+. ....|..|+... .+.+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~--~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGD--SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCc--CeEEEEeCCCeEEE
Confidence 46666554 445666677899999954221 0011111 234566666643 35555678999999
Q ss_pred Eec--CCCCc---------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----------------
Q 003271 624 WDT--ENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---------------- 676 (835)
Q Consensus 624 WDl--~t~~~---------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---------------- 676 (835)
|-. ..... ...........|..|+.-. ...+.-..+|.|+.|-....-.+
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~ 227 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGK 227 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC---CeEEEEecCCeEEEeeCCcCCccCCCccccccccccccc
Confidence 975 22110 0111112234566666543 23445567999999975432110
Q ss_pred ------eEee----cCceEEEEecCCCEEEEE-EcCCcEEEEECCC-----------CeEEEEEcCCCCCeEEEEEcCCC
Q 003271 677 ------GVFK----SGATQMRFQPRLGRILAA-AIENYISILDVET-----------QVCRLKLQGHKNQVHSVCWNTSG 734 (835)
Q Consensus 677 ------~~~~----~~i~~l~fsp~~~~ll~~-s~dg~I~IwDl~t-----------~~~i~~l~~h~~~I~sl~fspdg 734 (835)
..+. ..+..++.. ....++. ..++.|+.|-... .............|..|+... .
T Consensus 228 ~~~~~p~~v~~~~~~~v~~i~~g--~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~-~ 304 (423)
T 3mvd_K 228 RDLLRPTQLIITRAKPFEAIWAT--NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ-H 304 (423)
T ss_dssp TTTSSCEEECCTTCCCEEEEEEE--TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS-S
T ss_pred ccccCCeEEeecCCccEEEEEEC--CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc-C
Confidence 0000 112222222 2233333 4678888875331 111111111134566665432 2
Q ss_pred CEEEEEeCCeEEEEEcCCC------CCcc---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271 735 EYLASVSDELVRVWSIGSG------SKGE---CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797 (835)
Q Consensus 735 ~~LasgsDg~I~IwDl~t~------~~~~---~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~ 797 (835)
..++...||.|+.|-.... .... ....+......|..|+... .+.++...+|.|+.|=...
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEEECCT
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEECCCC
Confidence 3344444899999975421 1001 1122222223566666543 3456668899999997543
No 394
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.51 E-value=2.6e+02 Score=31.91 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCeEEEEEcCCCCEEEEEe-C------------CeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEE
Q 003271 723 NQVHSVCWNTSGEYLASVS-D------------ELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIG 785 (835)
Q Consensus 723 ~~I~sl~fspdg~~Lasgs-D------------g~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs 785 (835)
.....|+|+++|.+.++.. . +.|..++..++ +....+.. ....++.++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG---el~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG---EIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC---CEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC---eEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3466799999998777443 1 14666665555 33333332 346789999999999888865
No 395
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.81 E-value=63 Score=37.22 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=42.0
Q ss_pred EEEEEEeCCCCEEEEEeCC------------CeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEE
Q 003271 558 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATS 615 (835)
Q Consensus 558 V~sl~fSpdg~~Lasgs~D------------g~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latg 615 (835)
.--|+|+++|.++++-..+ ..+.+.+..+++....+.++. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999876664332 235666777788776665543 579999999999887765
No 396
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=39.73 E-value=5.2e+02 Score=30.29 Aligned_cols=145 Identities=10% Similarity=0.133 Sum_probs=69.8
Q ss_pred CCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeec------------CCCCeEEEEEcCCC-CcEEEEEeC
Q 003271 596 HTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG------------HSTTVMSLDFHPSK-EDLLCSCDN 661 (835)
Q Consensus 596 h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~------------h~~~V~sl~fsp~g-~~ll~sgs~ 661 (835)
-.+.|.+|+++|.. ..++++...|.|... ..+......+.. ....|.+|+++|.. +.+++..+.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S--~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRW--NAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEE--ETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEE--CCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45689999999965 566667666654433 333222222221 12458999999854 334443321
Q ss_pred ----CCcEEEE-ECCCCeeeeEeec----------Cc--eEEEEecCC-CEEEEEEcCCcEEEEECCCC---eEEEEEcC
Q 003271 662 ----NSEIRYW-SINNGSCAGVFKS----------GA--TQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQG 720 (835)
Q Consensus 662 ----Dg~I~iw-Dl~s~~~~~~~~~----------~i--~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~---~~i~~l~~ 720 (835)
.....|| ....++.-..... .. ..++++|.. +.++++..++.|.. ....+ +.+..+..
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 0112333 3333432222211 11 368888764 55555554443332 22222 22211111
Q ss_pred ---CCCCeEEEEEcCCC--CEEEEEeCC
Q 003271 721 ---HKNQVHSVCWNTSG--EYLASVSDE 743 (835)
Q Consensus 721 ---h~~~I~sl~fspdg--~~LasgsDg 743 (835)
....+..|+++|.. .++++..++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11347788888753 344444343
No 397
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=38.10 E-value=5.5e+02 Score=30.09 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=74.9
Q ss_pred CCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEecc------------CCCCeEEEEECCC-CCEEEEEECC-
Q 003271 554 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEE------------HTQWITDVRFSPS-LSRLATSSAD- 618 (835)
Q Consensus 554 H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~------------h~~~V~sv~fspd-g~~Latgs~D- 618 (835)
-.+.|.+|+++|.+ ..++++...+.|...+ +.++.-..+.. ....|.+|+++|. ...++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45679999999965 4566666666655543 33443333322 1245899999883 3444444321
Q ss_pred ----CeEEEEecCCCCceeEEeec-C------CC--CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---e--
Q 003271 619 ----RTVRVWDTENPDYSLRTFTG-H------ST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---K-- 680 (835)
Q Consensus 619 ----g~I~IWDl~t~~~~~~~~~~-h------~~--~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~-- 680 (835)
....||.-..+......... . .. ....|+++|.....++.+...+.|. .....++.-... .
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 12445544433322222211 0 11 1246888886544554555444333 222223221111 1
Q ss_pred ----cCceEEEEecCC-CEEEEEEcCC
Q 003271 681 ----SGATQMRFQPRL-GRILAAAIEN 702 (835)
Q Consensus 681 ----~~i~~l~fsp~~-~~ll~~s~dg 702 (835)
..+..++++|.. +.++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 235677888764 4577776665
No 398
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=37.91 E-value=4.4e+02 Score=28.83 Aligned_cols=191 Identities=10% Similarity=0.026 Sum_probs=94.6
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEecC---C-------CC--ce--eEEeec-CCCCeEEEEEcCCCCcEEEEEeCC
Q 003271 598 QWITDVRFSPSLSRLATSSADRTVRVWDTE---N-------PD--YS--LRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN 662 (835)
Q Consensus 598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---t-------~~--~~--~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~D 662 (835)
..|..|+... .+.+.-..||.|+.|-.. . .. .. ...+.. ....|..|+.-. ...+.-..+
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEETT
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEeCC
Confidence 4566666643 355555688999999751 0 00 00 011111 122477776543 244455679
Q ss_pred CcEEEEECCCCeeee-------------Eee-cCceEEEEecCCCEEEEEEcCCcEEEEECCCC------------eEE-
Q 003271 663 SEIRYWSINNGSCAG-------------VFK-SGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCR- 715 (835)
Q Consensus 663 g~I~iwDl~s~~~~~-------------~~~-~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~------------~~i- 715 (835)
|.|+.|-....-.+. ... .......+.....+.++...+|.|+.|-.... ..+
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~ 302 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVT 302 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceee
Confidence 999999765421110 000 00112233344566777778888988854310 111
Q ss_pred --EEEcC-CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC-c------------------ceE-EEeec-CCCceEE
Q 003271 716 --LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-G------------------ECI-HELSC-TGNKFHS 771 (835)
Q Consensus 716 --~~l~~-h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~-~------------------~~i-~~l~~-~~~~V~s 771 (835)
..+.. ....|..|+... ...++...+|.|+.|-...... . ..+ ..... ....|..
T Consensus 303 ~P~~v~~~~~~~i~~ia~G~-~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~ 381 (473)
T 3of7_A 303 KPKRLALPDNVVIRSIAAGE-HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKS 381 (473)
T ss_dssp EEEECCCCTTCCEEEEEECS-SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEE
T ss_pred ccccccccCCccEEEEEeCC-CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEE
Confidence 11111 224566665432 2233334488888887543210 0 000 01111 1114555
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 772 CVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 772 v~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
|+.. ..+.++...+|.|+.|-..
T Consensus 382 Ia~G--~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 382 VAAG--SHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEC--SSEEEEEETTSCEEEEECC
T ss_pred EEeC--CCeEEEEeCCCcEEEeeCC
Confidence 5543 3456677889999999754
No 399
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=37.38 E-value=4.4e+02 Score=28.76 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=74.2
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCee--------e----eEee--cCceEEEEecCCCEEEEEEcCCc
Q 003271 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSC--------A----GVFK--SGATQMRFQPRLGRILAAAIENY 703 (835)
Q Consensus 641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---s~~~--------~----~~~~--~~i~~l~fsp~~~~ll~~s~dg~ 703 (835)
..|..|+... ...+.-..+|.|+.|-.. .+.. . ..+. .....+.+.....+.++...+|.
T Consensus 148 ~~i~~va~G~---~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~ 224 (473)
T 3of7_A 148 HKVVQLAATD---NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM 224 (473)
T ss_dssp CCEEEEEECS---SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSC
T ss_pred CcEEEEEccC---CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCe
Confidence 4566666543 234455678999999852 1110 0 0111 11123444455567788888999
Q ss_pred EEEEECCCC-eE--------------EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC------c---ceE
Q 003271 704 ISILDVETQ-VC--------------RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G---ECI 759 (835)
Q Consensus 704 I~IwDl~t~-~~--------------i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~------~---~~i 759 (835)
|+.|-.... .. ...+ ....|..|+.. ....++...+|.|+.|-...... . ..+
T Consensus 225 v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G-~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~ 301 (473)
T 3of7_A 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG-ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301 (473)
T ss_dssp EEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC-SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEE
T ss_pred EEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC-CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCcee
Confidence 999965421 00 0011 11356666543 22334444488899997543210 0 011
Q ss_pred E---Eeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271 760 H---ELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 795 (835)
Q Consensus 760 ~---~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl 795 (835)
. .+.. ....|..|+.. ..+.++...+|.|+.|-.
T Consensus 302 ~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 302 TKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEE
T ss_pred eccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEEC
Confidence 1 1111 12345555543 335566677888888864
No 400
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=36.04 E-value=3.5e+02 Score=27.15 Aligned_cols=138 Identities=11% Similarity=0.032 Sum_probs=70.3
Q ss_pred EEEEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCC---CCC-cce---EEEeecCC
Q 003271 695 ILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS---GSK-GEC---IHELSCTG 766 (835)
Q Consensus 695 ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t---~~~-~~~---i~~l~~~~ 766 (835)
+++.+.+|.|+--....... ...+.....-+..+..+....+++..+.|.++-+.... ... ... ...+. .+
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~-~~ 83 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP-PG 83 (256)
T ss_dssp EEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-TT
T ss_pred EEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-CC
Confidence 44455556555444322110 00122222333333334455566666688766655432 110 111 11122 24
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-------cEE-EeccCCCCeeEEEEe-CCCCEEEEEECCCcEEEe
Q 003271 767 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------KTL-TLSAHDKLVSSLAAS-TVNGMVASASHDKCVKIW 834 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~-------~~~-~l~~h~~~V~~la~s-pdg~~LaSgs~DG~V~IW 834 (835)
..|..+....++.+|+.++..|.++...+..- ... .+.. .+.+..+... .++..|+..+.+|.+..+
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 56666644456677999999999999887432 111 3332 3455555554 345577788888876654
No 401
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.48 E-value=87 Score=39.14 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=29.9
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271 767 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 801 (835)
Q Consensus 767 ~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~ 801 (835)
..+.+++..++..++++.+.|++++||++.++.++
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 34556667788899999999999999999999877
No 402
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=33.89 E-value=1.3e+02 Score=34.43 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCEEEEEEeCCCCEEEEEeC------------CCeEEEEEcCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEE
Q 003271 556 SKVESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSS 616 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~------------Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fspdg~~Latgs 616 (835)
.....|+|+++|.+.++... ...|..++..++++...+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987774322 125777777778877666543 35689999999999887763
No 403
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.53 E-value=36 Score=42.62 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=33.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~ 594 (835)
..|.+++..++..+|++-+.|++++||++.++.++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 456677788888999999999999999999999987753
No 404
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=30.75 E-value=2.6e+02 Score=24.11 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=13.2
Q ss_pred EEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 003271 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (835)
Q Consensus 644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s 672 (835)
..+.+..+|+.++ . ..++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl-~-d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDI-T-DDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEE-E-CTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEE-E-CCCCCE-EEECCC
Confidence 3456666765333 2 224443 676654
No 405
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=28.97 E-value=73 Score=37.50 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc
Q 003271 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~ 595 (835)
..|.|+.+ +..+|++-+.|+++|+|++.++.++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666555 467999999999999999999998877643
No 406
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=28.53 E-value=7e+02 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=24.4
Q ss_pred cCCCceEEEEEeCCC--CEEEEEEcCC----eEEEEEcCCCcEE
Q 003271 764 CTGNKFHSCVFHPTF--PSLLVIGCYE----TLELWNMTENKTL 801 (835)
Q Consensus 764 ~~~~~V~sv~fspdg--~~L~sgs~dg----~I~IwDl~~~~~~ 801 (835)
+|...+....|.|+. -.++.+..++ ...+.|..+++++
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 567777777777764 3555555541 3556788888876
No 407
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=23.72 E-value=6.7e+02 Score=26.54 Aligned_cols=231 Identities=9% Similarity=0.094 Sum_probs=116.1
Q ss_pred CCEEEEEEeCCCCEEEEEeCC-CeEEEEEcCCC---------e--EEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271 556 SKVESCHFSPDGKLLATGGHD-KKAVLWCTESF---------T--VKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVR 622 (835)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~t~---------~--~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~ 622 (835)
..|..|+...+ +.+.-..| +.|+.|-.... . ....+.. ....|..|+.. ..+.+.-..||.|+
T Consensus 68 ~~i~~va~G~~--ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 68 HQIVSVTCGAD--HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQ 143 (406)
T ss_dssp SCEEEEEECSS--EEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCEEEEEeCcc--eEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEE
Confidence 35777776543 33333344 58999953211 1 1112222 22357777664 34566667899999
Q ss_pred EEecCCCCc----------eeEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----------e-eEee
Q 003271 623 VWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----------A-GVFK 680 (835)
Q Consensus 623 IWDl~t~~~----------~~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----------~-~~~~ 680 (835)
.|-...... ....+.. ....|..|+.-. ...+.-..+|.|+.|-....-. . ..+.
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~ 220 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT 220 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECC
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEec
Confidence 997543210 0111111 123566666543 2444556799999997543211 0 0111
Q ss_pred --cCceEEEEecCCCEEEEEEcCCcEEEEECCCC-----------eEEEEEcC-CCCCeEEEEEcCCCCEEEEEeCCeEE
Q 003271 681 --SGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVR 746 (835)
Q Consensus 681 --~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-----------~~i~~l~~-h~~~I~sl~fspdg~~LasgsDg~I~ 746 (835)
.......+.....+.++...+|.|+.|-.... .....+.. ....|..|+.. ....++...||.|+
T Consensus 221 ~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G-~~hs~alt~~G~v~ 299 (406)
T 4d9s_A 221 STGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG-WRHTMALTSDGKLY 299 (406)
T ss_dssp CSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSCEE
T ss_pred ccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec-CCEEEEEcCCCeEE
Confidence 11222334444566777788899999864321 11112221 22346666543 22334444488999
Q ss_pred EEEcCCCC------Ccc---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271 747 VWSIGSGS------KGE---CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796 (835)
Q Consensus 747 IwDl~t~~------~~~---~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~ 796 (835)
.|=..... ... ...........|..++. ...+.++...++.|+.|=..
T Consensus 300 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~--G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 300 GWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC--GWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp EEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe--CCCeEEEEeCCCCEEEecCC
Confidence 99754321 001 11111112234555554 33456777788999999754
No 408
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=22.00 E-value=3.7e+02 Score=22.87 Aligned_cols=25 Identities=8% Similarity=0.341 Sum_probs=15.0
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003271 727 SVCWNTSGEYLASVSDELVRVWSIGS 752 (835)
Q Consensus 727 sl~fspdg~~LasgsDg~I~IwDl~t 752 (835)
.+.+..+|.+++...++. .+|...+
T Consensus 53 ~l~l~~dGNLvl~~~~~~-~~W~S~t 77 (109)
T 3dzw_A 53 HLSMQSDGNLVVYSPRNN-PIWASNT 77 (109)
T ss_dssp EEEECTTSCEEEECTTSC-EEEECCC
T ss_pred EEEEeCCCCEEEECCCCC-EEEECCC
Confidence 466777787776544443 3775443
No 409
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=21.39 E-value=4.1e+02 Score=23.12 Aligned_cols=92 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred ecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCe-EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCC
Q 003271 689 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV-HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN 767 (835)
Q Consensus 689 sp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I-~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~ 767 (835)
++++.+.+.-..||.+.+|+- +..+..-....... ..+.+..+|.+++...++.+ +|...+. ...
T Consensus 27 S~~g~~~L~~~~dgnlvly~~--~~~vW~sn~~~~~~~~~l~l~~dGNLVl~d~~~~~-lW~S~~~-----------~~~ 92 (119)
T 1b2p_A 27 FGTHVYRFIMQTDCNLVLYDN--NNPIWATNTGGLGNGCRAVLQPDGVLVVITNENVT-VWQSPVA-----------GKA 92 (119)
T ss_dssp ETTEEEEEEECTTSCEEEEET--TEEEEECCCTTSCSSCEEEECTTSCEEEECTTCCE-EEECSCC-----------CCS
T ss_pred CCCCCEEEEEecCCCEEEEEC--CEEEEeCCCccCCCceEEEEccCCEEEEEeCCCcE-EEcCCCC-----------CCC
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799 (835)
Q Consensus 768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~ 799 (835)
....+.+.++|.+++... .+|...+.+
T Consensus 93 g~~~l~l~~~Gnlvl~~~-----~~W~Sg~~~ 119 (119)
T 1b2p_A 93 GHYVLVLQPDRNVVIYGD-----ALWATQTVR 119 (119)
T ss_dssp SCEEEEECTTSCEEEEES-----EEEECCCCC
T ss_pred CCEEEEEECCCcEEEECc-----cEeCCCCCC
No 410
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=21.05 E-value=1.4e+02 Score=25.85 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=13.6
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEc
Q 003271 727 SVCWNTSGEYLASVSDELVRVWSI 750 (835)
Q Consensus 727 sl~fspdg~~LasgsDg~I~IwDl 750 (835)
.+.+..+|.+++...++.+.+|..
T Consensus 53 ~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 53 TLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp EEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEcCCCcEEEEeCCCCEEEEEe
Confidence 456666777666544444446643
No 411
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=20.42 E-value=94 Score=25.80 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003271 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (835)
Q Consensus 10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~ 41 (835)
.+++..|-|||.=++|.=|..-|..|++.+..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~ 50 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQG 50 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCCC
Confidence 47899999999999999999999999999853
Done!